Citrus Sinensis ID: 013976

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430--
Protein Sequence
MSWRTSTTFRASRRFTSSSTASIKLIMAAAPSKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNSLVGSESEVLADASRLEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPFKIQKPTSAPKTEKPTSEPKAESSDIKESHESSSDKDVKDEL
Secondary Structure (PSIPRED)
cccccHHHHHHHHHcccccccEEEEEEcccccHHHHHHHHHHHHccccEEEccHHHHHHHHccccEEEEEEEccccccHHHHHHHHHccccccEEEEEccHHHHHHHcccccccccEEEEEccccccEEEcccccccHHHHHHHHHcccccEEEEEcccccccccccccEEEEEEEEEcccHHHHHHHHHHHHHHHcccEEEEEEEccccccccccHHccccccccccEEEEccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccEEEEEccccccccccccccEEEEEEccccHHHHHHHHHHHHHHHHHcccccEEEEEEEcccccccccccccccEEEEEEccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHcccccccEEEEEccccccHHHHHHHHHHHcccccEEcccHHHHHHHHccccEEEEEEEcccccHHHHHHHHHHHHHccccEcEcccHHHHHHcccccccccccEEEEEEcccccEEcccccccHHHHHHHHHHccccEEEEEccccHHHHHccccEEEEEEEcccccHHHHHHHHHHHHHHHHccccEEEEEcccHHHHHHHHHHcccccccccEEEEEcccccccccccccccHHHHHHHHHHHHccccccccccccccccccccEEEEEcccHHHHHccccccEEEEEEcccccHHHHHHHHHHHHHHHHcccccEEEEEEEccHHHHHHcccccccEEEEEcccccccccEEccccccHHHHHHHHHHccccccccccHHHHHHHccccccEEEEEcccccHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mswrtsttfrasrrftsssTASIKLIMAAAPSKDAIVTWIKKkigpgiynittlDEAERVLTSETKVVLGYLNSLvgsesevladasrleddvnfyqttnpdvakifhldskvnrpalvMVKKETEKISyfadgkfdkstiadfvfsnklplvtiftrenapsvfespikNQLLLFAvsndseklLPVFEEAAKSFKGKLIFVYVQMdnedvgkpvseyfgitgeapkvlaytgnddakkhildgeLTLDKIKTFGEdflegklkpffksdpipetndgdvkivvgNNFDEIVLDESKDVLLEIYapwcghcqafePTYNKLAKHLRGVDSIVIAKmdgttnehhraksdgfptilffpagnksfdpinvdVDRTVVALYKFLKknasipfkiqkptsapktekptsepkaessdikeshesssdkdvkdel
Flexible Loop (DISEMBL)
mswrtsttfrasrrftssstaSIKLIMaaapskdaIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNSLVGSESEVLADASRLEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKlkpffksdpipetndgdvkIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLkknasipfkiqkptsapktekptsepkaessdikeshesssdkdvkdel
Low Complexity Region (SEG)
MSWrtsttfrasrrftssstasIKLIMAAAPSKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNSLVGSESEVLADASRLEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPFKIQKPTSAPKTEKPTSEPKAessdikeshesssdkdvkdeL
Disordered region (IsUnstruct)
**********************IKLIMAAAPSKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNSLVGSESEVLADASRLEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPF*****************************************
Disordered Region (DISOPRED)
***RTSTTFRASRRFTSSSTASIKLIMAAAPSKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNSLVGSESEVLADASRLEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGED**********************VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLK*********************************************DEL
Disordered Region (DISEMBL)
***************TSSSTASIKLIMAAAPSKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNSLVGSESEVLADASRLEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPFKIQKP************************************
Disordered Region (DISPRO)
*****STTFRASRRFTSSSTASIKLIMAAAPSKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNSLVGSESEVLADASRLEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPFKIQKPTSAPKTEKPTSEPKAESSDIKESHESSSDKDV***L
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSWRTSTTFRASRRFTSSSTASIKLIMAAAPSKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNSLVGSESEVLADASRLEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPFKIQKPTSAPKTEKPTSEPKAESSDIKESHESSSDKDVKDEL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	432	2.2.26 [Sep-21-2011]
Q9FF55	597	Protein disulfide isomera	yes	no	0.925	0.670	0.690	1e-162
Q8VX13	579	Protein disulfide isomera	no	no	0.895	0.668	0.679	1e-158
Q67IX6	563	Protein disulfide isomera	yes	no	0.923	0.708	0.632	1e-151
Q5WA72	533	Protein disulfide isomera	no	no	0.819	0.664	0.355	1e-58
A3KPF5	537	Protein disulfide isomera	no	no	0.782	0.629	0.347	2e-58
P05307	510	Protein disulfide-isomera	yes	no	0.844	0.715	0.368	2e-56
Q66GQ3	534	Protein disulfide isomera	no	no	0.766	0.619	0.345	7e-56
Q2HWU2	510	Protein disulfide-isomera	N/A	no	0.840	0.711	0.369	9e-56
P04785	509	Protein disulfide-isomera	yes	no	0.844	0.717	0.365	1e-55
P07237	508	Protein disulfide-isomera	yes	no	0.844	0.718	0.363	1e-55

>sp|Q9FF55|PDI14_ARATH Protein disulfide isomerase-like 1-4 OS=Arabidopsis thaliana GN=PDIL1-4 PE=1 SV=1

 Score =  573 bits (1476), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 279/404 (69%), Positives = 331/404 (81%), Gaps = 4/404 (0%)

Query: 32  SKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNSLVGSESEVLADASRLED 91
           +K+ IVTW+KKKIGPG+YN+TTLD+AE+VLTS  KVVLGYLNSLVG E + L  AS+ ED
Sbjct: 195 TKETIVTWVKKKIGPGVYNLTTLDDAEKVLTSGNKVVLGYLNSLVGVEHDQLNAASKAED 254

Query: 92  DVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFADGKFDKSTIADFVFSNKLP 151
           DVNFYQT NPDVAK+FHLD +  RPALV+VKKE EKIS+F DG+F KS +  FV +NKL 
Sbjct: 255 DVNFYQTVNPDVAKMFHLDPESKRPALVLVKKEEEKISHF-DGEFVKSALVSFVSANKLA 313

Query: 152 LVTIFTRENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED 211
           LV++FTRE AP +FES IK QLLLF   N+SEK+L  F+EAAKSFKGKLIFV V +DNED
Sbjct: 314 LVSVFTRETAPEIFESAIKKQLLLFVTKNESEKVLTEFQEAAKSFKGKLIFVSVDLDNED 373

Query: 212 VGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSD 271
            GKPV+EYFG++G  PK++ YTGN+D KK+  DGE+  DKIK FGEDFL  KLKPF+KSD
Sbjct: 374 YGKPVAEYFGVSGNGPKLIGYTGNEDPKKYFFDGEIQSDKIKIFGEDFLNDKLKPFYKSD 433

Query: 272 PIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDS 331
           PIPE ND DVKIVVG+NFDEIVLD+SKDVLLE+YAPWCGHCQA EP YNKLAKHLR +DS
Sbjct: 434 PIPEKNDEDVKIVVGDNFDEIVLDDSKDVLLEVYAPWCGHCQALEPMYNKLAKHLRSIDS 493

Query: 332 IVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPF 391
           +VI KMDGTTNEH +AK++GFPTILFFPAGNK+ +PI VD DRTVVA YKFL+K+A+IPF
Sbjct: 494 LVITKMDGTTNEHPKAKAEGFPTILFFPAGNKTSEPITVDTDRTVVAFYKFLRKHATIPF 553

Query: 392 KIQKPTSAPKTEKPTSEPKAESSDIKESHES---SSDKDVKDEL 432
           K++KP S    +   S PK E+++ KES +S   SS  D KDEL
Sbjct: 554 KLEKPASTESPKTAESTPKVETTETKESPDSTTKSSQSDSKDEL 597

Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds.
Arabidopsis thaliana (taxid: 3702)
EC: 5EC: .EC: 3EC: .EC: 4EC: .EC: 1

>sp|Q8VX13|PDI13_ARATH Protein disulfide isomerase-like 1-3 OS=Arabidopsis thaliana GN=PDIL1-3 PE=2 SV=1

 Score =  556 bits (1434), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 269/396 (67%), Positives = 323/396 (81%), Gaps = 9/396 (2%)

Query: 32  SKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNSLVGSESEVLADASRLED 91
           +KD IVTW+KKK  P I+NITT +EAERVL++E K+V G+LNSLVGSESE LA ASRLED
Sbjct: 191 TKDGIVTWLKKKASPSIHNITTKEEAERVLSAEPKLVFGFLNSLVGSESEELAAASRLED 250

Query: 92  DVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFADGKFDKSTIADFVFSNKLP 151
           D++FYQT +PD+AK+F ++++V RPALV++KKE EK++ F DG F K+ IA+FV +NK+P
Sbjct: 251 DLSFYQTASPDIAKLFEIETQVKRPALVLLKKEEEKLARF-DGNFTKTAIAEFVSANKVP 309

Query: 152 LVTIFTRENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED 211
           LV  FTRE A  +FES +KNQL+LFA +N+SEK LP   E AKSFKGK +FVYVQMDNED
Sbjct: 310 LVINFTREGASLIFESSVKNQLILFAKANESEKHLPTLREVAKSFKGKFVFVYVQMDNED 369

Query: 212 VGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSD 271
            G+ VS +FG+TG APKVL YTGN+D +K ILDGELT++ IKT  EDFL  KLKPF+KSD
Sbjct: 370 YGEAVSGFFGVTGAAPKVLVYTGNEDMRKFILDGELTVNNIKTLAEDFLADKLKPFYKSD 429

Query: 272 PIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDS 331
           P+PE NDGDVK++VGNNFDEIVLDESKDVLLEIYAPWCGHCQ+FEP YNKL K+L+G+DS
Sbjct: 430 PLPENNDGDVKVIVGNNFDEIVLDESKDVLLEIYAPWCGHCQSFEPIYNKLGKYLKGIDS 489

Query: 332 IVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPF 391
           +V+AKMDGT+NEH RAK+DGFPTILFFP GNKSFDPI VDVDRTVV LYKFLKK+ASIPF
Sbjct: 490 LVVAKMDGTSNEHPRAKADGFPTILFFPGGNKSFDPIAVDVDRTVVELYKFLKKHASIPF 549

Query: 392 KIQKPTSAPKTEKPTSEPKAESSDIKESHESSSDKD 427
           K++KP         T EP   +    E  E  S KD
Sbjct: 550 KLEKPA--------TPEPVISTMKSDEKIEGDSSKD 577

Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|Q67IX6|PDI14_ORYSJ Protein disulfide isomerase-like 1-4 OS=Oryza sativa subsp. japonica GN=PDIL1-4 PE=2 SV=1

 Score =  534 bits (1375), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 256/405 (63%), Positives = 325/405 (80%), Gaps = 6/405 (1%)

Query: 29  AAPSKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNSLVGSESEVLADASR 88
            A +K+AIV+W+ KK+ PG+ NITT+DEAE++LT E K +L  L+SL G+ S+ +A ASR
Sbjct: 164 GARTKEAIVSWVNKKLAPGVQNITTVDEAEKILTGEDKAILAVLDSLSGAHSDEIAAASR 223

Query: 89  LEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFADGKFDKSTIADFVFSN 148
           LED +NFYQT+NPDVAK+FHLD    RP+LV++KK+ E+   F DG F  S IADFV +N
Sbjct: 224 LEDAINFYQTSNPDVAKLFHLDPAAKRPSLVLLKKQEEEKLTFYDGPFKASAIADFVSAN 283

Query: 149 KLPLVTIFTRENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMD 208
           KLPLV   T+E APS+F++PIK Q+LLF V+N+S K LP+F+EA+KSFKGKL+FV+V+ D
Sbjct: 284 KLPLVNTLTQETAPSIFDNPIKKQILLFVVANESSKFLPIFKEASKSFKGKLLFVFVERD 343

Query: 209 NEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLKPFF 268
           NE+VG+PV+ YFGITG+   VLAYTGN+DA+   LDGE++++ IK F EDFLE KL PF+
Sbjct: 344 NEEVGEPVANYFGITGQETTVLAYTGNEDARNFFLDGEISVENIKRFAEDFLEEKLTPFY 403

Query: 269 KSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRG 328
           KS+P+PE+N+GDVKIVVG N D+IVLDESKD LLEIYAPWCGHCQ  EPTYNKL KHLRG
Sbjct: 404 KSEPVPESNEGDVKIVVGKNLDQIVLDESKDALLEIYAPWCGHCQELEPTYNKLGKHLRG 463

Query: 329 VDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNAS 388
           +DS+VIAKMDGT NEH RAK DGFPTILF+PAG KSF+PI  + DRTVV +YKF+KK+AS
Sbjct: 464 IDSLVIAKMDGTANEHPRAKPDGFPTILFYPAGKKSFEPITFEGDRTVVEMYKFIKKHAS 523

Query: 389 IPFKIQKP-TSAPKTEKPTSEPKAESSDIKESHESSSDKDVKDEL 432
           IPFK+++P +SA KTEK  S     S++++   E SS  + KDEL
Sbjct: 524 IPFKLKRPDSSATKTEKDQS---TASTNLR--GERSSGTNFKDEL 563

Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds. May play a role in storage protein biogenesis.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|Q5WA72|PDI15_ORYSJ Protein disulfide isomerase-like 1-5 OS=Oryza sativa subsp. japonica GN=PDIL1-5 PE=2 SV=1

 Score =  227 bits (579), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 128/360 (35%), Positives = 199/360 (55%), Gaps = 6/360 (1%)

Query: 32  SKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNSLVGSESEVLADASRLED 91
           +KDAIVTW++KK G     I + D AE  L  +    +G   +  G+E E    A+  E+
Sbjct: 162 TKDAIVTWVRKKTGAPASRIQSKDSAEEFLKKDQTFAVGLFKNFEGAEYEEFVKAATSEN 221

Query: 92  DVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFADGKFDKSTIADFVFSNKLP 151
           +V F +T + +VAKI           L +VK E EK   F +G F++  I  FV  NK P
Sbjct: 222 EVQFVETNDRNVAKILFPGIASEEQFLGLVKSEPEKFEKF-NGAFEEKEIIQFVELNKFP 280

Query: 152 LVTIFTRENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED 211
           L+T+FT  N+  V+ SPIK Q+  FA + D E L  + +E A+ FK K++ +YV    E 
Sbjct: 281 LITVFTDLNSGKVYGSPIKLQVFTFAEAYDFEDLESMIQEVARGFKTKIMLIYVDTAEEK 340

Query: 212 VGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSD 271
           + KP    +G+  E P V A+       K++++ E+    ++ F    LEG L P+F+S+
Sbjct: 341 LAKPFLTLYGLEPEKPTVTAF-DTSKGTKYLMEAEINAKNLQDFCLSLLEGTLPPYFRSE 399

Query: 272 PIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLR--GV 329
           P+PE   G ++ VVG  FD  VL+  ++V LE++APWC  C+A      KLAKH    G 
Sbjct: 400 PVPE-EKGPIEKVVGRTFDSSVLESPQNVFLEVHAPWCVDCEAISKNVEKLAKHFNDLGQ 458

Query: 330 DSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASI 389
            ++  A++D + NEH + + + +PT+L +PA +KS +PI +     +  + KF+K+   I
Sbjct: 459 TNLKFARIDASVNEHPKLQINNYPTLLLYPAQDKS-NPIKLSKKSNLKDMAKFVKEKLQI 517

Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds. May play a role in storage protein biogenesis.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|A3KPF5|PDI15_ARATH Protein disulfide isomerase-like 1-5 OS=Arabidopsis thaliana GN=PDIL1-5 PE=2 SV=1

 Score =  227 bits (578), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 118/340 (34%), Positives = 192/340 (56%), Gaps = 2/340 (0%)

Query: 25  LIMAAAPSKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNSLVGSESEVLA 84
           L      S + IV W++KK G  I  + T+DEA R L      VLG      GSE     
Sbjct: 164 LTYNGGSSAEDIVIWVQKKTGAPIITLNTVDEAPRFLDKYHTFVLGLFEKFEGSEHNEFV 223

Query: 85  DASRLEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFADGKFDKSTIADF 144
            A++ +D++ F +T + DVAK+   D K N   + +VK E E+ + + DG +    I +F
Sbjct: 224 KAAKSDDEIQFIETRDSDVAKLLFPDLKSNNVFIGLVKPEAERYTVY-DGSYKMEKILEF 282

Query: 145 VFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVY 204
           + SNK PL T  T  N   V+ SP+K Q++LF+ ++D +KL    E+ A+ FK KL+F+Y
Sbjct: 283 LGSNKFPLFTKLTETNTVWVYSSPVKLQVMLFSKADDFQKLAQPLEDIARKFKSKLMFIY 342

Query: 205 VQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKL 264
           V + NE++  P    FGI      V+A   N+   K++L+ + + + I+ F      G +
Sbjct: 343 VDITNENLAMPFLILFGIEAGNKTVVAAFDNNLNSKYLLESDPSPNSIEEFCSGLAHGTV 402

Query: 265 KPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAK 324
             +++S+P+P+  +  +  VVG  FD +VL+  ++VLLE++ PWC +C+A      KLAK
Sbjct: 403 SRYYRSEPVPDNENASIVTVVGKTFDGLVLNSRENVLLEVHTPWCVNCEALSKQIEKLAK 462

Query: 325 HLRGVDSIVIAKMDGTTNEHHRAK-SDGFPTILFFPAGNK 363
           H +G +++V A++D + NEH + +  D +P IL + +G K
Sbjct: 463 HFKGFENLVFARIDASANEHTKLQVDDKYPIILLYKSGEK 502

Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|P05307|PDIA1_BOVIN Protein disulfide-isomerase OS=Bos taurus GN=P4HB PE=1 SV=1

 Score =  220 bits (560), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 140/380 (36%), Positives = 211/380 (55%), Gaps = 15/380 (3%)

Query: 15  FTSSSTASIKLIMAAAPSKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNS 74
           F +  TAS K   A   + D IV W+KK+ GP    ++    AE ++ S    V+G+   
Sbjct: 107 FKNGDTASPKEYTAGREADD-IVNWLKKRTGPAASTLSDGAAAEALVESSEVAVIGFFKD 165

Query: 75  LVGSESEVLADASRLEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFADG 134
           +    ++    A+ + DD+ F  T+N DV   + LD    +  +V+ KK  E  + F +G
Sbjct: 166 MESDSAKQFFLAAEVIDDIPFGITSNSDVFSKYQLD----KDGVVLFKKFDEGRNNF-EG 220

Query: 135 KFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLF---AVSNDSEKLLPVFEE 191
           +  K  + DF+  N+LPLV  FT + AP +F   IK  +LLF   +VS D E  L  F++
Sbjct: 221 EVTKEKLLDFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVS-DYEGKLSNFKK 279

Query: 192 AAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGE-APKVLAYTGNDDAKKHILDG-ELTL 249
           AA+SFKGK++F+++  D+ D  + + E+FG+  E  P V   T  ++  K+  +  ELT 
Sbjct: 280 AAESFKGKILFIFIDSDHTD-NQRILEFFGLKKEECPAVRLITLEEEMTKYKPESDELTA 338

Query: 250 DKIKTFGEDFLEGKLKPFFKSDPIPETNDGD-VKIVVGNNFDEIVLDESKDVLLEIYAPW 308
           +KI  F   FLEGK+KP   S  +P+  D   VK++VG NF+E+  DE K+V +E YAPW
Sbjct: 339 EKITEFCHRFLEGKIKPHLMSQELPDDWDKQPVKVLVGKNFEEVAFDEKKNVFVEFYAPW 398

Query: 309 CGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPI 368
           CGHC+   P ++KL +  +  ++IVIAKMD T NE    K   FPT+ FFPA       I
Sbjct: 399 CGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANEVEAVKVHSFPTLKFFPASADR-TVI 457

Query: 369 NVDVDRTVVALYKFLKKNAS 388
           + + +RT+    KFL+    
Sbjct: 458 DYNGERTLDGFKKFLESGGQ 477

This multifunctional protein catalyzes the formation, breakage and rearrangement of disulfide bonds. At the cell surface, seems to act as a reductase that cleaves disulfide bonds of proteins attached to the cell. May therefore cause structural modifications of exofacial proteins. Inside the cell, seems to form/rearrange disulfide bonds of nascent proteins. At high concentrations, functions as a chaperone that inhibits aggregation of misfolded proteins. At low concentrations, facilitates aggregation (anti-chaperone activity). May be involved with other chaperones in the structural modification of the TG precursor in hormone biogenesis. Also acts a structural subunit of various enzymes such as prolyl 4-hydroxylase and microsomal triacylglycerol transfer protein MTTP.

Bos taurus (taxid: 9913)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|Q66GQ3|PDI16_ARATH Protein disulfide isomerase-like 1-6 OS=Arabidopsis thaliana GN=PDIL1-6 PE=1 SV=1

 Score =  218 bits (555), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 115/333 (34%), Positives = 187/333 (56%), Gaps = 2/333 (0%)

Query: 32  SKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLG-YLNSLVGSESEVLADASRLE 90
           S + IV W++KK G     + T+DEA   L      +LG +  S   S  +    A+ L+
Sbjct: 169 SSEEIVIWVQKKTGASTIKLDTVDEASGFLKKHHTFILGLFEKSEDSSGHDEFVKAASLD 228

Query: 91  DDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFADGKFDKSTIADFVFSNKL 150
           +++ F +T++ DVAK+   + K N   + +VK E EK + + DG      I +F+ SNK 
Sbjct: 229 NEIQFVETSSIDVAKLLFPNLKTNNVFVGLVKTEAEKYTSY-DGPCQAEKIVEFLNSNKF 287

Query: 151 PLVTIFTRENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNE 210
           PLVT  T  N   V+ SP+K Q+++F+ ++D E L    E+ A+ FK KL+ +Y+ + NE
Sbjct: 288 PLVTKLTESNTVRVYSSPVKLQVMVFSKTDDFESLAQPLEDIARKFKSKLMLIYIDISNE 347

Query: 211 DVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKS 270
           ++  P    FGI      V+A   N+   K++L+ + +   I+ F      G +  ++KS
Sbjct: 348 NLAMPFLTLFGIEDAKKTVVAAFDNNLNSKYLLESDPSPSNIEEFCFGLAHGTVSAYYKS 407

Query: 271 DPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVD 330
            PIP+  +  V  VVG  FDE+VL  S++VLLE++ PWC +C+A      KL++H +G +
Sbjct: 408 QPIPDNQNASVVAVVGRTFDEVVLRSSENVLLEVHTPWCINCEALSKQVEKLSQHFKGFE 467

Query: 331 SIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNK 363
           ++V A++D + NEH +   D +PTIL +  G K
Sbjct: 468 NLVFARIDASANEHPKLTVDDYPTILLYKTGEK 500

Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|Q2HWU2|PDIA1_MACFU Protein disulfide-isomerase OS=Macaca fuscata fuscata GN=P4HB PE=2 SV=1

 Score =  218 bits (554), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 141/382 (36%), Positives = 210/382 (54%), Gaps = 19/382 (4%)

Query: 15  FTSSSTASIKLIMAAAPSKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNS 74
           F +  TAS K   A   + D IV W+KK+ GP    +     AE ++ S    V+G+   
Sbjct: 107 FRNGDTASPKEYTAGREADD-IVNWLKKRTGPAATTLPDGAAAESLVESSEVAVIGFFKD 165

Query: 75  LVGSESEVLADASRLEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFADG 134
           +    ++    A+   DD+ F  T+N DV   + LD    +  +V+ KK  E  + F +G
Sbjct: 166 VESDSAKQFLQAAEAIDDIPFGITSNSDVFSKYQLD----KDGVVLFKKFDEGRNNF-EG 220

Query: 135 KFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLF---AVSNDSEKLLPVFEE 191
           +  K  + DF+  N+LPLV  FT + AP +F   IK  +LLF   +VS D +  L  F+ 
Sbjct: 221 EVTKENLLDFIKYNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVS-DYDGKLSNFKT 279

Query: 192 AAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGE-APKVLAYTGNDDAKKHILDG-ELTL 249
           AA+SFKGK++F+++  D+ D  + + E+FG+  E  P V   T  ++  K+  +  ELT 
Sbjct: 280 AAESFKGKILFIFIDSDHTD-NQRILEFFGLKKEECPAVRLITLEEEMTKYKPESDELTA 338

Query: 250 DKIKTFGEDFLEGKLKPFFKSDPIPETNDGD-VKIVVGNNFDEIVLDESKDVLLEIYAPW 308
           ++I  F   FLEGK+KP   S  +PE  D   VK++VG NF+E+  DE+K+V +E YAPW
Sbjct: 339 ERITEFCHRFLEGKIKPHLMSQELPEDWDKQPVKVLVGKNFEEVAFDENKNVFVEFYAPW 398

Query: 309 CGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPI 368
           CGHC+   P ++KL +  +  ++IVIAKMD T NE    K   FPT+ FFPA   S D  
Sbjct: 399 CGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANEVEAIKVHSFPTLKFFPA---SVDRT 455

Query: 369 NVDV--DRTVVALYKFLKKNAS 388
            +D   +RT+    KFL+    
Sbjct: 456 VIDYNGERTLDGFKKFLESGGQ 477

This multifunctional protein catalyzes the formation, breakage and rearrangement of disulfide bonds. At the cell surface, seems to act as a reductase that cleaves disulfide bonds of proteins attached to the cell. May therefore cause structural modifications of exofacial proteins. Inside the cell, seems to form/rearrange disulfide bonds of nascent proteins. At high concentrations, functions as a chaperone that inhibits aggregation of misfolded proteins. At low concentrations, facilitates aggregation (anti-chaperone activity). May be involved with other chaperones in the structural modification of the TG precursor in hormone biogenesis. Also acts a structural subunit of various enzymes such as prolyl 4-hydroxylase and microsomal triacylglycerol transfer protein MTTP.

Macaca fuscata fuscata (taxid: 9543)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|P04785|PDIA1_RAT Protein disulfide-isomerase OS=Rattus norvegicus GN=P4hb PE=1 SV=2

 Score =  218 bits (554), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 139/380 (36%), Positives = 208/380 (54%), Gaps = 15/380 (3%)

Query: 15  FTSSSTASIKLIMAAAPSKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNS 74
           F +  TAS K   A   + D IV W+KK+ GP    ++    AE ++ S    V+G+   
Sbjct: 107 FKNGDTASPKEYTAGREADD-IVNWLKKRTGPAATTLSDTAAAESLVDSSEVTVIGFFKD 165

Query: 75  LVGSESEVLADASRLEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFADG 134
                ++    A+   DD+ F  T+N DV   + LD    +  +V+ KK  E  + F +G
Sbjct: 166 AGSDSAKQFLLAAEAVDDIPFGITSNSDVFSKYQLD----KDGVVLFKKFDEGRNNF-EG 220

Query: 135 KFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLF---AVSNDSEKLLPVFEE 191
           +  K  + DF+  N+LPLV  FT + AP +F   IK  +LLF   +VS D +  L  F++
Sbjct: 221 EITKEKLLDFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVS-DYDGKLSNFKK 279

Query: 192 AAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGE-APKVLAYTGNDDAKKHILDG-ELTL 249
           AA+ FKGK++F+++  D+ D  + + E+FG+  E  P V   T  ++  K+  +  ELT 
Sbjct: 280 AAEGFKGKILFIFIDSDHTD-NQRILEFFGLKKEECPAVRLITLEEEMTKYKPESDELTA 338

Query: 250 DKIKTFGEDFLEGKLKPFFKSDPIPETNDGD-VKIVVGNNFDEIVLDESKDVLLEIYAPW 308
           +KI  F   FLEGK+KP   S  +PE  D   VK++VG NF+E+  DE K+V +E YAPW
Sbjct: 339 EKITQFCHHFLEGKIKPHLMSQELPEDWDKQPVKVLVGKNFEEVAFDEKKNVFVEFYAPW 398

Query: 309 CGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPI 368
           CGHC+   P ++KL +  +  ++IVIAKMD T NE    K   FPT+ FFPA       I
Sbjct: 399 CGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANEVEAVKVHSFPTLKFFPASADR-TVI 457

Query: 369 NVDVDRTVVALYKFLKKNAS 388
           + + +RT+    KFL+    
Sbjct: 458 DYNGERTLDGFKKFLESGGQ 477

This multifunctional protein catalyzes the formation, breakage and rearrangement of disulfide bonds. At the cell surface, seems to act as a reductase that cleaves disulfide bonds of proteins attached to the cell. May therefore cause structural modifications of exofacial proteins. Inside the cell, seems to form/rearrange disulfide bonds of nascent proteins. At high concentrations, functions as a chaperone that inhibits aggregation of misfolded proteins. At low concentrations, facilitates aggregation (anti-chaperone activity). May be involved with other chaperones in the structural modification of the TG precursor in hormone biogenesis. Also acts a structural subunit of various enzymes such as prolyl 4-hydroxylase and microsomal triacylglycerol transfer protein MTTP.

Rattus norvegicus (taxid: 10116)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|P07237|PDIA1_HUMAN Protein disulfide-isomerase OS=Homo sapiens GN=P4HB PE=1 SV=3

 Score =  217 bits (553), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 138/380 (36%), Positives = 208/380 (54%), Gaps = 15/380 (3%)

Query: 15  FTSSSTASIKLIMAAAPSKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNS 74
           F +  TAS K   A   + D IV W+KK+ GP    +     AE ++ S    V+G+   
Sbjct: 105 FRNGDTASPKEYTAGREADD-IVNWLKKRTGPAATTLPDGAAAESLVESSEVAVIGFFKD 163

Query: 75  LVGSESEVLADASRLEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFADG 134
           +    ++    A+   DD+ F  T+N DV   + LD    +  +V+ KK  E  + F +G
Sbjct: 164 VESDSAKQFLQAAEAIDDIPFGITSNSDVFSKYQLD----KDGVVLFKKFDEGRNNF-EG 218

Query: 135 KFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLF---AVSNDSEKLLPVFEE 191
           +  K  + DF+  N+LPLV  FT + AP +F   IK  +LLF   +VS D +  L  F+ 
Sbjct: 219 EVTKENLLDFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVS-DYDGKLSNFKT 277

Query: 192 AAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGE-APKVLAYTGNDDAKKHILDGE-LTL 249
           AA+SFKGK++F+++  D+ D  + + E+FG+  E  P V   T  ++  K+  + E LT 
Sbjct: 278 AAESFKGKILFIFIDSDHTD-NQRILEFFGLKKEECPAVRLITLEEEMTKYKPESEELTA 336

Query: 250 DKIKTFGEDFLEGKLKPFFKSDPIPETNDGD-VKIVVGNNFDEIVLDESKDVLLEIYAPW 308
           ++I  F   FLEGK+KP   S  +PE  D   VK++VG NF+++  DE K+V +E YAPW
Sbjct: 337 ERITEFCHRFLEGKIKPHLMSQELPEDWDKQPVKVLVGKNFEDVAFDEKKNVFVEFYAPW 396

Query: 309 CGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPI 368
           CGHC+   P ++KL +  +  ++IVIAKMD T NE    K   FPT+ FFPA       I
Sbjct: 397 CGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANEVEAVKVHSFPTLKFFPASADR-TVI 455

Query: 369 NVDVDRTVVALYKFLKKNAS 388
           + + +RT+    KFL+    
Sbjct: 456 DYNGERTLDGFKKFLESGGQ 475

This multifunctional protein catalyzes the formation, breakage and rearrangement of disulfide bonds. At the cell surface, seems to act as a reductase that cleaves disulfide bonds of proteins attached to the cell. May therefore cause structural modifications of exofacial proteins. Inside the cell, seems to form/rearrange disulfide bonds of nascent proteins. At high concentrations, functions as a chaperone that inhibits aggregation of misfolded proteins. At low concentrations, facilitates aggregation (anti-chaperone activity). May be involved with other chaperones in the structural modification of the TG precursor in hormone biogenesis. Also acts a structural subunit of various enzymes such as prolyl 4-hydroxylase and microsomal triacylglycerol transfer protein MTTP.

Homo sapiens (taxid: 9606)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	432
224104643	583	predicted protein [Populus trichocarpa]	0.902	0.668	0.790	0.0
255578860	575	protein disulfide isomerase, putative [R	0.905	0.68	0.786	0.0
356550175	558	PREDICTED: protein disulfide isomerase-l	0.900	0.697	0.791	0.0
118485031	461	unknown [Populus trichocarpa]	0.902	0.845	0.788	0.0
351722913	551	protein disulfide isomerase-like protein	0.898	0.704	0.790	0.0
357453901	564	Protein disulfide isomerase L-2 [Medicag	0.914	0.700	0.760	1e-176
449462091	583	PREDICTED: protein disulfide isomerase-l	0.912	0.675	0.760	1e-176
225435313	577	PREDICTED: protein disulfide isomerase-l	0.905	0.677	0.765	1e-176
297746254	462	unnamed protein product [Vitis vinifera]	0.905	0.846	0.765	1e-175
356542509	579	PREDICTED: protein disulfide isomerase-l	0.905	0.675	0.748	1e-170

>gi|224104643|ref|XP_002313512.1| predicted protein [Populus trichocarpa] gi|222849920|gb|EEE87467.1| predicted protein [Populus trichocarpa]

 Score =  645 bits (1665), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/401 (79%), Positives = 357/401 (89%), Gaps = 11/401 (2%)

Query: 32  SKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNSLVGSESEVLADASRLED 91
           +KD IVTWIKKKIGPGIYNITT+D+AER+LTSETK+VLG+LNSLVG ESE LA ASRLED
Sbjct: 194 NKDGIVTWIKKKIGPGIYNITTVDDAERLLTSETKLVLGFLNSLVGPESEELAAASRLED 253

Query: 92  DVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFADGKFDKSTIADFVFSNKLP 151
           +V+FYQT NPDVAK+FHLD +  RPALVM+KKE EK+S F DG F KS IA+FVF+NKLP
Sbjct: 254 EVSFYQTVNPDVAKLFHLDPQAKRPALVMLKKEAEKLSVF-DGNFSKSEIAEFVFANKLP 312

Query: 152 LVTIFTRENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED 211
           LVTIFTRE+AP +FES IK QLLLFA+SNDSEK++P+F+EAA+ FKGKLIFVYV+MDNED
Sbjct: 313 LVTIFTRESAPLIFESTIKKQLLLFAISNDSEKVVPIFQEAARLFKGKLIFVYVEMDNED 372

Query: 212 VGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSD 271
           VGKPVSEYFGI+G APKVLAYTGNDDAKK + DG++TLDKIK FGEDF+E KLKPFFKSD
Sbjct: 373 VGKPVSEYFGISGTAPKVLAYTGNDDAKKFVFDGDVTLDKIKAFGEDFIEDKLKPFFKSD 432

Query: 272 PIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDS 331
           P+PE+NDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQ+ EPTYNKLA HLRG++S
Sbjct: 433 PVPESNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQSLEPTYNKLATHLRGIES 492

Query: 332 IVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPF 391
           IVIAKMDGTTNEH RAKSDGFPT+LFFPAGNKSFDPI VD DRTVVA YKF+KK+ASIPF
Sbjct: 493 IVIAKMDGTTNEHPRAKSDGFPTLLFFPAGNKSFDPITVDTDRTVVAFYKFIKKHASIPF 552

Query: 392 KIQKPTSAPKTEKPTSEPKAESSDIKESHESSSDKDVKDEL 432
           K+QKP SA          KAESSD K+  ESS+ +DVKDEL
Sbjct: 553 KLQKPASA---------SKAESSDAKDGIESST-RDVKDEL 583

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578860|ref|XP_002530284.1| protein disulfide isomerase, putative [Ricinus communis] gi|223530182|gb|EEF32091.1| protein disulfide isomerase, putative [Ricinus communis]

 Score =  644 bits (1660), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/402 (78%), Positives = 357/402 (88%), Gaps = 11/402 (2%)

Query: 32  SKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNSLVGSESEVLADASRLED 91
           +K+AIVTWIKKKIGPGIYN+TTLD+AERVLTSE+KVVLGYLNSLVG ESE +A ASRLED
Sbjct: 184 TKEAIVTWIKKKIGPGIYNLTTLDDAERVLTSESKVVLGYLNSLVGPESEEVAAASRLED 243

Query: 92  DVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFADGKFDKSTIADFVFSNKLP 151
           DVNFYQT NPDVAK+FHLD +V RPALVMVK+E EK+SYF DG F KS IADFVF+NKLP
Sbjct: 244 DVNFYQTVNPDVAKLFHLDPEVKRPALVMVKREAEKLSYF-DGNFSKSEIADFVFANKLP 302

Query: 152 LVTIFTRENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED 211
           LVT FTRE+APS+FESPIK QLLLFA SN+SEK+LPVF++AAK FKGKLIFVYV++DNE+
Sbjct: 303 LVTTFTRESAPSIFESPIKKQLLLFATSNNSEKVLPVFQDAAKLFKGKLIFVYVELDNEE 362

Query: 212 VGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSD 271
           VGKPV++YFGI G+A ++L YTGNDD KK + D E+T+DKIK FGEDFLE KLKPFFKSD
Sbjct: 363 VGKPVADYFGIVGDASQLLGYTGNDDGKKFVFDAEITMDKIKAFGEDFLEDKLKPFFKSD 422

Query: 272 PIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDS 331
           PIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQA EPT+NKLAKHLRG++S
Sbjct: 423 PIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQALEPTFNKLAKHLRGIES 482

Query: 332 IVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPF 391
           +VIAKMDGTTNEH RAKSDGFPT+LFFPAGNKSFDPI VD DRTVVA YKF+KK+ASIPF
Sbjct: 483 LVIAKMDGTTNEHPRAKSDGFPTLLFFPAGNKSFDPITVDTDRTVVAFYKFIKKHASIPF 542

Query: 392 KIQKPTSAPKTEKPTSEPKAESSDIKESHES-SSDKDVKDEL 432
           K+QKP S PK+         ESS+ K S ++ SS +DVKDEL
Sbjct: 543 KLQKPDSTPKS---------ESSEAKGSPQTESSTEDVKDEL 575

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550175|ref|XP_003543464.1| PREDICTED: protein disulfide isomerase-like 1-4-like isoform 1 [Glycine max]

 Score =  644 bits (1660), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/402 (79%), Positives = 356/402 (88%), Gaps = 13/402 (3%)

Query: 32  SKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNSLVGSESEVLADASRLED 91
           +KDAIVTWI+KKIGPGIYN+TT++EA+R+LT+ETKVVLG+LNSLVG ESE LA ASRLED
Sbjct: 169 TKDAIVTWIRKKIGPGIYNLTTVEEAQRILTNETKVVLGFLNSLVGPESEELAAASRLED 228

Query: 92  DVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFADGKFDKSTIADFVFSNKLP 151
           DVNFYQT NPDVAK+FH+D  V RPAL+++KKE EK+++F DGKF+KS IADFVFSNKLP
Sbjct: 229 DVNFYQTVNPDVAKLFHIDQDVKRPALILIKKEEEKLNHF-DGKFEKSAIADFVFSNKLP 287

Query: 152 LVTIFTRENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED 211
           LVTIFTRE+APSVFE+PIK QLLLFA SNDSE L+P F+EAAKSFKGKLIFVYV+MDNED
Sbjct: 288 LVTIFTRESAPSVFENPIKKQLLLFATSNDSETLVPAFKEAAKSFKGKLIFVYVEMDNED 347

Query: 212 VGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSD 271
           VGKPVSEYFGI+G APKVL YTGNDD KK +LDGE+T DKIK FGEDF+E KLKPF+KSD
Sbjct: 348 VGKPVSEYFGISGNAPKVLGYTGNDDGKKFVLDGEVTTDKIKAFGEDFVEDKLKPFYKSD 407

Query: 272 PIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDS 331
           P+PE+NDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQ+ EP YNKLAKHLR +DS
Sbjct: 408 PVPESNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQSLEPIYNKLAKHLRNIDS 467

Query: 332 IVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPF 391
           +VIAKMDGTTNEH RAK DGFPT+LFFPAGNKSFDPI VD DRTVVA YKFLKK+ASIPF
Sbjct: 468 LVIAKMDGTTNEHPRAKPDGFPTLLFFPAGNKSFDPITVDTDRTVVAFYKFLKKHASIPF 527

Query: 392 KIQKPTSAPKTEKPTSEPKAE-SSDIKESHESSSDKDVKDEL 432
           K+QKPTS       TSE  ++ SSD KES  S    DVKDEL
Sbjct: 528 KLQKPTS-------TSESDSKGSSDAKESQSS----DVKDEL 558

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118485031|gb|ABK94380.1| unknown [Populus trichocarpa]

 Score =  643 bits (1659), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/401 (78%), Positives = 356/401 (88%), Gaps = 11/401 (2%)

Query: 32  SKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNSLVGSESEVLADASRLED 91
           +KD IVTWIKKKIGPGIYNITT+D+AER+LTSETK+VLG+LNSLVG ESE LA ASRLED
Sbjct: 72  NKDGIVTWIKKKIGPGIYNITTVDDAERLLTSETKLVLGFLNSLVGPESEELAAASRLED 131

Query: 92  DVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFADGKFDKSTIADFVFSNKLP 151
           +V+FYQT NPDVAK+FHLD +  RPALVM+KKE EK+S F DG F KS IA+FVF+NKLP
Sbjct: 132 EVSFYQTVNPDVAKLFHLDPQAKRPALVMLKKEAEKLSVF-DGNFSKSEIAEFVFANKLP 190

Query: 152 LVTIFTRENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED 211
           LVTIFTRE+AP +FES IK QLLLFA+SNDSEK++P+F+EAA+ FKGKLIFVYV+M NED
Sbjct: 191 LVTIFTRESAPLIFESTIKKQLLLFAISNDSEKVVPIFQEAARLFKGKLIFVYVEMGNED 250

Query: 212 VGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSD 271
           VGKPVSEYFGI+G APKVLAYTGNDDAKK + DG++TLDKIK FGEDF+E KLKPFFKSD
Sbjct: 251 VGKPVSEYFGISGTAPKVLAYTGNDDAKKFVFDGDVTLDKIKAFGEDFIEDKLKPFFKSD 310

Query: 272 PIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDS 331
           P+PE+NDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQ+ EPTYNKLA HLRG++S
Sbjct: 311 PVPESNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQSLEPTYNKLATHLRGIES 370

Query: 332 IVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPF 391
           IVIAKMDGTTNEH RAKSDGFPT+LFFPAGNKSFDPI VD DRTVVA YKF+KK+ASIPF
Sbjct: 371 IVIAKMDGTTNEHPRAKSDGFPTLLFFPAGNKSFDPITVDTDRTVVAFYKFIKKHASIPF 430

Query: 392 KIQKPTSAPKTEKPTSEPKAESSDIKESHESSSDKDVKDEL 432
           K+QKP SA          KAESSD K+  ESS+ +DVKDEL
Sbjct: 431 KLQKPASA---------SKAESSDAKDGIESST-RDVKDEL 461

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722913|ref|NP_001238028.1| protein disulfide isomerase-like protein precursor [Glycine max] gi|50789207|dbj|BAD34455.1| protein disulfide isomerase-like protein [Glycine max] gi|171854982|dbj|BAG16715.1| protein disulfide isomerase L-2 [Glycine max]

 Score =  639 bits (1648), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/401 (79%), Positives = 356/401 (88%), Gaps = 13/401 (3%)

Query: 32  SKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNSLVGSESEVLADASRLED 91
           +KDAI+TWIKKKIGPGIYN+TT+++A+R+LT+ETKVVLG+LNSLVG ESE LA ASRLED
Sbjct: 164 TKDAIMTWIKKKIGPGIYNLTTVEDAQRILTNETKVVLGFLNSLVGPESEELAAASRLED 223

Query: 92  DVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFADGKFDKSTIADFVFSNKLP 151
           DVNFYQT +PDVAK+FH+D  V RPAL++VKKE EK+++F DGKF+KS IADFVFSNKLP
Sbjct: 224 DVNFYQTVDPDVAKLFHIDPDVKRPALILVKKEEEKLNHF-DGKFEKSEIADFVFSNKLP 282

Query: 152 LVTIFTRENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED 211
           LVTIFTRE+APSVFE+PIK QLLLFA SNDSEKL+P F+EAAKSFKGKLIFVYV+MDNED
Sbjct: 283 LVTIFTRESAPSVFENPIKKQLLLFATSNDSEKLIPAFKEAAKSFKGKLIFVYVEMDNED 342

Query: 212 VGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSD 271
           VGKPVSEYFGI+G APKVL YTGNDD KK +LDGE+T DKIK FG+DFLE KLKPF+KSD
Sbjct: 343 VGKPVSEYFGISGNAPKVLGYTGNDDGKKFVLDGEVTADKIKAFGDDFLEDKLKPFYKSD 402

Query: 272 PIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDS 331
           P+PE+NDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQA EP Y+KLAKHLR ++S
Sbjct: 403 PVPESNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQALEPIYDKLAKHLRNIES 462

Query: 332 IVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPF 391
           +VIAKMDGTTNEH RAK DGFPT+LFFPAGNKSFDPI VD DRTVVA YKFLKK+ASIPF
Sbjct: 463 LVIAKMDGTTNEHPRAKPDGFPTLLFFPAGNKSFDPITVDTDRTVVAFYKFLKKHASIPF 522

Query: 392 KIQKPTSAPKTEKPTSEPKAESSDIKESHESSSDKDVKDEL 432
           K+QKPTS       TS+ K  SSD KES  S    DVKDEL
Sbjct: 523 KLQKPTS-------TSDAKG-SSDAKESQSS----DVKDEL 551

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357453901|ref|XP_003597231.1| Protein disulfide isomerase L-2 [Medicago truncatula] gi|355486279|gb|AES67482.1| Protein disulfide isomerase L-2 [Medicago truncatula]

 Score =  624 bits (1610), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 305/401 (76%), Positives = 351/401 (87%), Gaps = 6/401 (1%)

Query: 32  SKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNSLVGSESEVLADASRLED 91
           +K+AIVTWIKKK GPGI+NIT+LDEA+ +L+SETKVVLG+LNSLVG ESE LA ASRLED
Sbjct: 170 TKEAIVTWIKKKTGPGIHNITSLDEAKTILSSETKVVLGFLNSLVGPESEELAAASRLED 229

Query: 92  DVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFADGKFDKSTIADFVFSNKLP 151
           DVNFYQT +P+VAK+F++D+   RPAL++VKKE E++++F DGKFDKS I DFV SNK+P
Sbjct: 230 DVNFYQTVDPEVAKLFNIDTNAKRPALILVKKEEEQLNHF-DGKFDKSAIVDFVSSNKIP 288

Query: 152 LVTIFTRENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED 211
           LVT+FTRENAP++FE+PIK Q+LLF  SNDSEKLLPVF+EA+KSFKGKLIFV V+ DNED
Sbjct: 289 LVTVFTRENAPTIFENPIKKQVLLFVTSNDSEKLLPVFQEASKSFKGKLIFVLVETDNED 348

Query: 212 VGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSD 271
           VGKPVS+YFGI+G AP+VLAYTGNDD +K + +GE+T DKIK FGEDFLE KLKPFFKSD
Sbjct: 349 VGKPVSDYFGISGTAPQVLAYTGNDDGRKFVFEGEVTGDKIKAFGEDFLEDKLKPFFKSD 408

Query: 272 PIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDS 331
           PIPE+NDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQ  EP YNKLAKHLR +DS
Sbjct: 409 PIPESNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQHLEPIYNKLAKHLRSIDS 468

Query: 332 IVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPF 391
           +VIAKMDGT NEH RAKSDGFPT+LFFPAGNKSFDPI V+ DRTVVA YKFLK++ASIPF
Sbjct: 469 LVIAKMDGTQNEHPRAKSDGFPTLLFFPAGNKSFDPITVETDRTVVAFYKFLKQHASIPF 528

Query: 392 KIQKPTSAPKTEKPTSEPKAESSDIKESHESSSDKDVKDEL 432
           K+QKP S P   KP S    ESSD KE+   SS+ DVKDEL
Sbjct: 529 KLQKPASTP---KPESTDAKESSDAKENQ--SSNSDVKDEL 564

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462091|ref|XP_004148775.1| PREDICTED: protein disulfide isomerase-like 1-4-like [Cucumis sativus] gi|449519484|ref|XP_004166765.1| PREDICTED: protein disulfide isomerase-like 1-4-like [Cucumis sativus]

 Score =  624 bits (1609), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 305/401 (76%), Positives = 356/401 (88%), Gaps = 7/401 (1%)

Query: 32  SKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNSLVGSESEVLADASRLED 91
           +KDAIV+WIKKK GPGIYNIT++++AER+LTSE+KV +GYLNSLVGSES+ LA ASRLED
Sbjct: 190 TKDAIVSWIKKKTGPGIYNITSVEDAERILTSESKVAVGYLNSLVGSESDELAAASRLED 249

Query: 92  DVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFADGKFDKSTIADFVFSNKLP 151
           DVNFYQT +P+VAK+FH+++   RPALV++KKE EK+S F DG+F KS I +FVF+NKLP
Sbjct: 250 DVNFYQTVDPEVAKLFHIEASAKRPALVLLKKEAEKLSRF-DGEFSKSAIVEFVFANKLP 308

Query: 152 LVTIFTRENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED 211
           LVT+FT+ENAP +FES IK QL+LFA+SND+EKL+P+FEEAAKSFKGKLIFVYV++DNE+
Sbjct: 309 LVTMFTKENAPLIFESSIKKQLILFAISNDTEKLIPIFEEAAKSFKGKLIFVYVEIDNEE 368

Query: 212 VGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSD 271
           VGKPVSEYFG+ G  P+VL YTGN+D+KK +LD E+TL+ IK F E+FLE KLKPF+KSD
Sbjct: 369 VGKPVSEYFGVNGNGPEVLGYTGNEDSKKFVLDKEVTLENIKAFAENFLEDKLKPFYKSD 428

Query: 272 PIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDS 331
           PIPETNDGDVKIVVG+NFDEIVLDESKDVLLEIYAPWCGHCQA EPTYNKLAKHL GVDS
Sbjct: 429 PIPETNDGDVKIVVGDNFDEIVLDESKDVLLEIYAPWCGHCQALEPTYNKLAKHLHGVDS 488

Query: 332 IVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPF 391
           +VIAKMDGTTNEH RAKSDGFPTILFFPAGNKSFDPI VD DRTVVA YKFLKKNASIPF
Sbjct: 489 LVIAKMDGTTNEHPRAKSDGFPTILFFPAGNKSFDPITVDTDRTVVAFYKFLKKNASIPF 548

Query: 392 KIQKPTSAPKTEKPTSEPKAESSDIKESHESSSDKDVKDEL 432
           K+QKP S+PK E  +SE K+ S D KES +S+   D+KDEL
Sbjct: 549 KLQKPVSSPKAE--SSEGKS-SDDAKESPKST---DLKDEL 583

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435313|ref|XP_002285136.1| PREDICTED: protein disulfide isomerase-like 1-4 isoform 1 [Vitis vinifera]

 Score =  623 bits (1607), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 307/401 (76%), Positives = 355/401 (88%), Gaps = 10/401 (2%)

Query: 32  SKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNSLVGSESEVLADASRLED 91
           +KDAI+TWIKKKIGPG+YNITT+++ ER+LTSE KVVLG+L+SLVG ESE L+  S+LED
Sbjct: 187 TKDAIITWIKKKIGPGVYNITTIEDGERILTSENKVVLGFLDSLVGPESEELSAGSKLED 246

Query: 92  DVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFADGKFDKSTIADFVFSNKLP 151
           DVNFYQT NPDVAK+FH+D KV RPALV++KKE EK+S+F +G F KS IA+FVF+NKLP
Sbjct: 247 DVNFYQTVNPDVAKLFHIDPKVKRPALVLLKKEAEKLSHF-NGNFTKSAIAEFVFANKLP 305

Query: 152 LVTIFTRENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED 211
           LVT FTR++AP +FESPIK QLLLFA +NDSEK++P F+EAAKSFKGK+IFVYV+MDNE+
Sbjct: 306 LVTTFTRDSAPLIFESPIKKQLLLFATANDSEKVVPAFQEAAKSFKGKIIFVYVEMDNEE 365

Query: 212 VGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSD 271
           +G+PVS+YFG+TG+APKVLAYTGNDDA+K ILDGE+TLDK+K FGEDFLE K+KPFFKSD
Sbjct: 366 IGRPVSDYFGVTGDAPKVLAYTGNDDARKFILDGEVTLDKVKAFGEDFLEDKVKPFFKSD 425

Query: 272 PIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDS 331
           PIPE+ND DVKIVVG+NFDEIVLDESKDVLLEIYAPWCGHCQA EPTYNKLAKHL G++S
Sbjct: 426 PIPESNDEDVKIVVGDNFDEIVLDESKDVLLEIYAPWCGHCQALEPTYNKLAKHLHGIES 485

Query: 332 IVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPF 391
           +VIAKMDGTTNEHHRAKSDGFPT+LFFPAGNKS DPI VD DRTVVALYKFLK +ASIPF
Sbjct: 486 LVIAKMDGTTNEHHRAKSDGFPTLLFFPAGNKSSDPITVDTDRTVVALYKFLKTHASIPF 545

Query: 392 KIQKPTSAPKTEKPTSEPKAESSDIKESHESSSDKDVKDEL 432
           K+QKP SA          K E SD KES ESSS  D+KDEL
Sbjct: 546 KLQKPASA---------SKPEGSDAKESDESSSPSDLKDEL 577

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297746254|emb|CBI16310.3| unnamed protein product [Vitis vinifera]

 Score =  622 bits (1603), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 307/401 (76%), Positives = 355/401 (88%), Gaps = 10/401 (2%)

Query: 32  SKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNSLVGSESEVLADASRLED 91
           +KDAI+TWIKKKIGPG+YNITT+++ ER+LTSE KVVLG+L+SLVG ESE L+  S+LED
Sbjct: 72  TKDAIITWIKKKIGPGVYNITTIEDGERILTSENKVVLGFLDSLVGPESEELSAGSKLED 131

Query: 92  DVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFADGKFDKSTIADFVFSNKLP 151
           DVNFYQT NPDVAK+FH+D KV RPALV++KKE EK+S+F +G F KS IA+FVF+NKLP
Sbjct: 132 DVNFYQTVNPDVAKLFHIDPKVKRPALVLLKKEAEKLSHF-NGNFTKSAIAEFVFANKLP 190

Query: 152 LVTIFTRENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED 211
           LVT FTR++AP +FESPIK QLLLFA +NDSEK++P F+EAAKSFKGK+IFVYV+MDNE+
Sbjct: 191 LVTTFTRDSAPLIFESPIKKQLLLFATANDSEKVVPAFQEAAKSFKGKIIFVYVEMDNEE 250

Query: 212 VGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSD 271
           +G+PVS+YFG+TG+APKVLAYTGNDDA+K ILDGE+TLDK+K FGEDFLE K+KPFFKSD
Sbjct: 251 IGRPVSDYFGVTGDAPKVLAYTGNDDARKFILDGEVTLDKVKAFGEDFLEDKVKPFFKSD 310

Query: 272 PIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDS 331
           PIPE+ND DVKIVVG+NFDEIVLDESKDVLLEIYAPWCGHCQA EPTYNKLAKHL G++S
Sbjct: 311 PIPESNDEDVKIVVGDNFDEIVLDESKDVLLEIYAPWCGHCQALEPTYNKLAKHLHGIES 370

Query: 332 IVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPF 391
           +VIAKMDGTTNEHHRAKSDGFPT+LFFPAGNKS DPI VD DRTVVALYKFLK +ASIPF
Sbjct: 371 LVIAKMDGTTNEHHRAKSDGFPTLLFFPAGNKSSDPITVDTDRTVVALYKFLKTHASIPF 430

Query: 392 KIQKPTSAPKTEKPTSEPKAESSDIKESHESSSDKDVKDEL 432
           K+QKP SA          K E SD KES ESSS  D+KDEL
Sbjct: 431 KLQKPASA---------SKPEGSDAKESDESSSPSDLKDEL 462

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356542509|ref|XP_003539709.1| PREDICTED: protein disulfide isomerase-like 1-4-like isoform 1 [Glycine max]

 Score =  605 bits (1559), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 300/401 (74%), Positives = 345/401 (86%), Gaps = 10/401 (2%)

Query: 32  SKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNSLVGSESEVLADASRLED 91
           +KDAIVTWIKKKIGPG+ NITT+D+AER+LT+E+KVVLG LNSLVG+ES+ LA AS+LED
Sbjct: 189 TKDAIVTWIKKKIGPGVSNITTVDDAERILTAESKVVLGLLNSLVGTESDELAAASKLED 248

Query: 92  DVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFADGKFDKSTIADFVFSNKLP 151
           DVNFYQT   DVAK+FH+D  V RPAL+++KKE EK+++F DG+F K+ IADFV SNKLP
Sbjct: 249 DVNFYQTVVADVAKLFHIDPSVKRPALILLKKEEEKLNHF-DGQFVKAEIADFVTSNKLP 307

Query: 152 LVTIFTRENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED 211
           LVTIFTRE+AP +FES IK QLLLF  SND+EK +PVF+EAAK FKGKLIFV+V++DNED
Sbjct: 308 LVTIFTRESAPVIFESQIKKQLLLFVTSNDTEKFVPVFKEAAKKFKGKLIFVHVELDNED 367

Query: 212 VGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSD 271
           VGKPV++YFGITG  PKVLAYTGNDD +K +LD ELT+D I  FG DFLE KLKPF KSD
Sbjct: 368 VGKPVADYFGITGNGPKVLAYTGNDDGRKFLLDEELTVDTITAFGNDFLEEKLKPFLKSD 427

Query: 272 PIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDS 331
           P+PE+NDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQA EPTYNKLAKHLR ++S
Sbjct: 428 PVPESNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQALEPTYNKLAKHLRNIES 487

Query: 332 IVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPF 391
           IVIAKMDGTTNEH RAKSDGFPT+LFFPAGNKS DPI VDVD TV A YKFL+K+ASIPF
Sbjct: 488 IVIAKMDGTTNEHPRAKSDGFPTLLFFPAGNKSSDPIPVDVDHTVKAFYKFLRKHASIPF 547

Query: 392 KIQKPTSAPKTEKPTSEPKAESSDIKESHESSSDKDVKDEL 432
           ++QKPTS  KT        +ESS +KES  SS+  DVKDEL
Sbjct: 548 QLQKPTSTAKT-------GSESSYVKESQSSST--DVKDEL 579

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	432
TAIR|locus:2175811	597	PDIL1-4 "PDI-like 1-4" [Arabid	0.870	0.629	0.708	6.4e-147
TAIR|locus:2082712	579	PDIL1-3 "PDI-like 1-3" [Arabid	0.875	0.652	0.697	1.1e-144
UNIPROTKB|P09102	515	P4HB "Protein disulfide-isomer	0.807	0.677	0.373	1.9e-58
UNIPROTKB|F1N9H3	393	P4HB "Protein disulfide-isomer	0.807	0.888	0.373	1.9e-58
TAIR|locus:2018134	537	PDIL1-5 "PDI-like 1-5" [Arabid	0.826	0.664	0.333	1.1e-57
UNIPROTKB|P05307	510	P4HB "Protein disulfide-isomer	0.807	0.684	0.368	5.9e-57
UNIPROTKB|A6H7J6	510	P4HB "Prolyl 4-hydroxylase, be	0.807	0.684	0.368	7.5e-57
RGD|3244	509	P4hb "prolyl 4-hydroxylase, be	0.805	0.683	0.372	9.6e-57
UNIPROTKB|P07237	508	P4HB "Protein disulfide-isomer	0.807	0.687	0.362	3.3e-56
MGI|MGI:97464	509	P4hb "prolyl 4-hydroxylase, be	0.807	0.685	0.360	8.6e-56

TAIR|locus:2175811 PDIL1-4 "PDI-like 1-4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1435 (510.2 bits), Expect = 6.4e-147, P = 6.4e-147
 Identities = 270/381 (70%), Positives = 319/381 (83%)

Query:    32 SKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNSLVGSESEVLADASRLED 91
             +K+ IVTW+KKKIGPG+YN+TTLD+AE+VLTS  KVVLGYLNSLVG E + L  AS+ ED
Sbjct:   195 TKETIVTWVKKKIGPGVYNLTTLDDAEKVLTSGNKVVLGYLNSLVGVEHDQLNAASKAED 254

Query:    92 DVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFADGKFDKSTIADFVFSNKLP 151
             DVNFYQT NPDVAK+FHLD +  RPALV+VKKE EKIS+F DG+F KS +  FV +NKL 
Sbjct:   255 DVNFYQTVNPDVAKMFHLDPESKRPALVLVKKEEEKISHF-DGEFVKSALVSFVSANKLA 313

Query:   152 LVTIFTRENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED 211
             LV++FTRE AP +FES IK QLLLF   N+SEK+L  F+EAAKSFKGKLIFV V +DNED
Sbjct:   314 LVSVFTRETAPEIFESAIKKQLLLFVTKNESEKVLTEFQEAAKSFKGKLIFVSVDLDNED 373

Query:   212 VGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSD 271
              GKPV+EYFG++G  PK++ YTGN+D KK+  DGE+  DKIK FGEDFL  KLKPF+KSD
Sbjct:   374 YGKPVAEYFGVSGNGPKLIGYTGNEDPKKYFFDGEIQSDKIKIFGEDFLNDKLKPFYKSD 433

Query:   272 PIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDS 331
             PIPE ND DVKIVVG+NFDEIVLD+SKDVLLE+YAPWCGHCQA EP YNKLAKHLR +DS
Sbjct:   434 PIPEKNDEDVKIVVGDNFDEIVLDDSKDVLLEVYAPWCGHCQALEPMYNKLAKHLRSIDS 493

Query:   332 IVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPF 391
             +VI KMDGTTNEH +AK++GFPTILFFPAGNK+ +PI VD DRTVVA YKFL+K+A+IPF
Sbjct:   494 LVITKMDGTTNEHPKAKAEGFPTILFFPAGNKTSEPITVDTDRTVVAFYKFLRKHATIPF 553

Query:   392 KIQKP--TSAPKTEKPTSEPK 410
             K++KP  T +PKT + T  PK
Sbjct:   554 KLEKPASTESPKTAEST--PK 572

GO:0005576 "extracellular region" evidence=ISM

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0003756 "protein disulfide isomerase activity" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

TAIR|locus:2082712 PDIL1-3 "PDI-like 1-3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1414 (502.8 bits), Expect = 1.1e-144, P = 1.1e-144
 Identities = 265/380 (69%), Positives = 319/380 (83%)

Query:    32 SKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNSLVGSESEVLADASRLED 91
             +KD IVTW+KKK  P I+NITT +EAERVL++E K+V G+LNSLVGSESE LA ASRLED
Sbjct:   191 TKDGIVTWLKKKASPSIHNITTKEEAERVLSAEPKLVFGFLNSLVGSESEELAAASRLED 250

Query:    92 DVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFADGKFDKSTIADFVFSNKLP 151
             D++FYQT +PD+AK+F ++++V RPALV++KKE EK++ F DG F K+ IA+FV +NK+P
Sbjct:   251 DLSFYQTASPDIAKLFEIETQVKRPALVLLKKEEEKLARF-DGNFTKTAIAEFVSANKVP 309

Query:   152 LVTIFTRENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED 211
             LV  FTRE A  +FES +KNQL+LFA +N+SEK LP   E AKSFKGK +FVYVQMDNED
Sbjct:   310 LVINFTREGASLIFESSVKNQLILFAKANESEKHLPTLREVAKSFKGKFVFVYVQMDNED 369

Query:   212 VGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSD 271
              G+ VS +FG+TG APKVL YTGN+D +K ILDGELT++ IKT  EDFL  KLKPF+KSD
Sbjct:   370 YGEAVSGFFGVTGAAPKVLVYTGNEDMRKFILDGELTVNNIKTLAEDFLADKLKPFYKSD 429

Query:   272 PIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDS 331
             P+PE NDGDVK++VGNNFDEIVLDESKDVLLEIYAPWCGHCQ+FEP YNKL K+L+G+DS
Sbjct:   430 PLPENNDGDVKVIVGNNFDEIVLDESKDVLLEIYAPWCGHCQSFEPIYNKLGKYLKGIDS 489

Query:   332 IVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPF 391
             +V+AKMDGT+NEH RAK+DGFPTILFFP GNKSFDPI VDVDRTVV LYKFLKK+ASIPF
Sbjct:   490 LVVAKMDGTSNEHPRAKADGFPTILFFPGGNKSFDPIAVDVDRTVVELYKFLKKHASIPF 549

Query:   392 KIQKP-TSAPKTEKPTSEPK 410
             K++KP T  P      S+ K
Sbjct:   550 KLEKPATPEPVISTMKSDEK 569

GO:0005783 "endoplasmic reticulum" evidence=IEA;IDA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0003756 "protein disulfide isomerase activity" evidence=ISS

GO:0034976 "response to endoplasmic reticulum stress" evidence=IEP;RCA

GO:0006457 "protein folding" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009749 "response to glucose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

UNIPROTKB|P09102 P4HB "Protein disulfide-isomerase" [Gallus gallus (taxid:9031)]

 Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
 Identities = 135/361 (37%), Positives = 206/361 (57%)

Query:    29 AAPSKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNSLVGSESEVLADASR 88
             A    D IV+W+KK+ GP    +T    AE ++ S   VV+G+   +    ++    A+ 
Sbjct:   123 AGREADDIVSWLKKRTGPAATTLTDAAAAETLVDSSEVVVIGFFKDVTSDAAKEFLLAAE 182

Query:    89 LEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFADGKFDKSTIADFVFSN 148
               DD+ F  +++ DV   + L    ++  +V+ KK  E  + F +G   K  + +F+ SN
Sbjct:   183 SVDDIPFGISSSADVFSKYQL----SQDGVVLFKKFDEGRNNF-EGDLTKDNLLNFIKSN 237

Query:   149 KLPLVTIFTRENAPSVFESPIKNQLLLFAVSN--DSEKLLPVFEEAAKSFKGKLIFVYVQ 206
             +LPLV  FT + AP +F   IK  +LLF   +  D E  L  F+ AA +FKGK++F+++ 
Sbjct:   238 QLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYEGKLDNFKTAAGNFKGKILFIFID 297

Query:   207 MDNEDVGKPVSEYFGITGE-APKVLAYTGNDDAKKHILDGE-LTLDKIKTFGEDFLEGKL 264
              D+ D  + + E+FG+  E  P V   T  ++  K+  + + LT DKIK F   FLEGK+
Sbjct:   298 SDHSD-NQRILEFFGLKKEECPAVRLITLEEEMTKYKPESDDLTADKIKEFCNKFLEGKI 356

Query:   265 KPFFKSDPIPETNDGD-VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLA 323
             KP   S  +PE  D   VK++VG NF+E+  DE+K+V +E YAPWCGHC+   P ++KL 
Sbjct:   357 KPHLMSQDLPEDWDKQPVKVLVGKNFEEVAFDENKNVFVEFYAPWCGHCKQLAPIWDKLG 416

Query:   324 KHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFL 383
             +  R  ++IVIAKMD T NE    K   FPT+ FFPAG+   + I+ + +RT+    KFL
Sbjct:   417 ETYRDHENIVIAKMDSTANEVEAVKIHSFPTLKFFPAGSGR-NVIDYNGERTLEGFKKFL 475

Query:   384 K 384
             +
Sbjct:   476 E 476

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0003756 "protein disulfide isomerase activity" evidence=IEA

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0004656 "procollagen-proline 4-dioxygenase activity" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=IEA

UNIPROTKB|F1N9H3 P4HB "Protein disulfide-isomerase" [Gallus gallus (taxid:9031)]

 Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
 Identities = 135/361 (37%), Positives = 206/361 (57%)

Query:    29 AAPSKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNSLVGSESEVLADASR 88
             A    D IV+W+KK+ GP    +T    AE ++ S   VV+G+   +    ++    A+ 
Sbjct:     1 AGREADDIVSWLKKRTGPAATTLTDAAAAETLVDSSEVVVIGFFKDVTSDAAKEFLLAAE 60

Query:    89 LEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFADGKFDKSTIADFVFSN 148
               DD+ F  +++ DV   + L    ++  +V+ KK  E  + F +G   K  + +F+ SN
Sbjct:    61 SVDDIPFGISSSADVFSKYQL----SQDGVVLFKKFDEGRNNF-EGDLTKDNLLNFIKSN 115

Query:   149 KLPLVTIFTRENAPSVFESPIKNQLLLFAVSN--DSEKLLPVFEEAAKSFKGKLIFVYVQ 206
             +LPLV  FT + AP +F   IK  +LLF   +  D E  L  F+ AA +FKGK++F+++ 
Sbjct:   116 QLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYEGKLDNFKTAAGNFKGKILFIFID 175

Query:   207 MDNEDVGKPVSEYFGITGE-APKVLAYTGNDDAKKHILDGE-LTLDKIKTFGEDFLEGKL 264
              D+ D  + + E+FG+  E  P V   T  ++  K+  + + LT DKIK F   FLEGK+
Sbjct:   176 SDHSD-NQRILEFFGLKKEECPAVRLITLEEEMTKYKPESDDLTADKIKEFCNKFLEGKI 234

Query:   265 KPFFKSDPIPETNDGD-VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLA 323
             KP   S  +PE  D   VK++VG NF+E+  DE+K+V +E YAPWCGHC+   P ++KL 
Sbjct:   235 KPHLMSQDLPEDWDKQPVKVLVGKNFEEVAFDENKNVFVEFYAPWCGHCKQLAPIWDKLG 294

Query:   324 KHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFL 383
             +  R  ++IVIAKMD T NE    K   FPT+ FFPAG+   + I+ + +RT+    KFL
Sbjct:   295 ETYRDHENIVIAKMDSTANEVEAVKIHSFPTLKFFPAGSGR-NVIDYNGERTLEGFKKFL 353

Query:   384 K 384
             +
Sbjct:   354 E 354

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0004656 "procollagen-proline 4-dioxygenase activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=IEA

TAIR|locus:2018134 PDIL1-5 "PDI-like 1-5" [Arabidopsis thaliana (taxid:3702)]

 Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
 Identities = 120/360 (33%), Positives = 200/360 (55%)

Query:    32 SKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNSLVGSESEVLADASRLED 91
             S + IV W++KK G  I  + T+DEA R L      VLG      GSE      A++ +D
Sbjct:   171 SAEDIVIWVQKKTGAPIITLNTVDEAPRFLDKYHTFVLGLFEKFEGSEHNEFVKAAKSDD 230

Query:    92 DVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFADGKFDKSTIADFVFSNKLP 151
             ++ F +T + DVAK+   D K N   + +VK E E+ + + DG +    I +F+ SNK P
Sbjct:   231 EIQFIETRDSDVAKLLFPDLKSNNVFIGLVKPEAERYTVY-DGSYKMEKILEFLGSNKFP 289

Query:   152 LVTIFTRENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED 211
             L T  T  N   V+ SP+K Q++LF+ ++D +KL    E+ A+ FK KL+F+YV + NE+
Sbjct:   290 LFTKLTETNTVWVYSSPVKLQVMLFSKADDFQKLAQPLEDIARKFKSKLMFIYVDITNEN 349

Query:   212 VGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSD 271
             +  P    FGI      V+A   N+   K++L+ + + + I+ F      G +  +++S+
Sbjct:   350 LAMPFLILFGIEAGNKTVVAAFDNNLNSKYLLESDPSPNSIEEFCSGLAHGTVSRYYRSE 409

Query:   272 PIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDS 331
             P+P+  +  +  VVG  FD +VL+  ++VLLE++ PWC +C+A      KLAKH +G ++
Sbjct:   410 PVPDNENASIVTVVGKTFDGLVLNSRENVLLEVHTPWCVNCEALSKQIEKLAKHFKGFEN 469

Query:   332 IVIAKMDGTTNEHHRAK-SDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIP 390
             +V A++D + NEH + +  D +P IL + +G K   P+ +    +   +  F+ +    P
Sbjct:   470 LVFARIDASANEHTKLQVDDKYPIILLYKSGEKE-KPLKLSTKLSAKDIAVFINEELLKP 528

GO:0009507 "chloroplast" evidence=ISM

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0003756 "protein disulfide isomerase activity" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0000280 "nuclear division" evidence=RCA

GO:0007000 "nucleolus organization" evidence=RCA

UNIPROTKB|P05307 P4HB "Protein disulfide-isomerase" [Bos taurus (taxid:9913)]

 Score = 586 (211.3 bits), Expect = 5.9e-57, P = 5.9e-57
 Identities = 133/361 (36%), Positives = 203/361 (56%)

Query:    29 AAPSKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNSLVGSESEVLADASR 88
             A    D IV W+KK+ GP    ++    AE ++ S    V+G+   +    ++    A+ 
Sbjct:   120 AGREADDIVNWLKKRTGPAASTLSDGAAAEALVESSEVAVIGFFKDMESDSAKQFFLAAE 179

Query:    89 LEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFADGKFDKSTIADFVFSN 148
             + DD+ F  T+N DV   + LD    +  +V+ KK  E  + F +G+  K  + DF+  N
Sbjct:   180 VIDDIPFGITSNSDVFSKYQLD----KDGVVLFKKFDEGRNNF-EGEVTKEKLLDFIKHN 234

Query:   149 KLPLVTIFTRENAPSVFESPIKNQLLLFAVSN--DSEKLLPVFEEAAKSFKGKLIFVYVQ 206
             +LPLV  FT + AP +F   IK  +LLF   +  D E  L  F++AA+SFKGK++F+++ 
Sbjct:   235 QLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYEGKLSNFKKAAESFKGKILFIFID 294

Query:   207 MDNEDVGKPVSEYFGITGE-APKVLAYTGNDDAKKHILDG-ELTLDKIKTFGEDFLEGKL 264
              D+ D  + + E+FG+  E  P V   T  ++  K+  +  ELT +KI  F   FLEGK+
Sbjct:   295 SDHTD-NQRILEFFGLKKEECPAVRLITLEEEMTKYKPESDELTAEKITEFCHRFLEGKI 353

Query:   265 KPFFKSDPIPETNDGD-VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLA 323
             KP   S  +P+  D   VK++VG NF+E+  DE K+V +E YAPWCGHC+   P ++KL 
Sbjct:   354 KPHLMSQELPDDWDKQPVKVLVGKNFEEVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLG 413

Query:   324 KHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFL 383
             +  +  ++IVIAKMD T NE    K   FPT+ FFPA +     I+ + +RT+    KFL
Sbjct:   414 ETYKDHENIVIAKMDSTANEVEAVKVHSFPTLKFFPA-SADRTVIDYNGERTLDGFKKFL 472

Query:   384 K 384
             +
Sbjct:   473 E 473

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=ISS

GO:0004656 "procollagen-proline 4-dioxygenase activity" evidence=ISS

GO:0042470 "melanosome" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA

GO:0003756 "protein disulfide isomerase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

UNIPROTKB|A6H7J6 P4HB "Prolyl 4-hydroxylase, beta subunit" [Bos taurus (taxid:9913)]

 Score = 585 (211.0 bits), Expect = 7.5e-57, P = 7.5e-57
 Identities = 133/361 (36%), Positives = 202/361 (55%)

Query:    29 AAPSKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNSLVGSESEVLADASR 88
             A    D IV W+KK+ GP    ++    AE ++ S    V+G+   +    ++    A+ 
Sbjct:   120 AGREADDIVNWLKKRTGPAASTLSDGAAAEALVESSEVAVIGFFKDMESDSAKQFLLAAE 179

Query:    89 LEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFADGKFDKSTIADFVFSN 148
               DD+ F  T+N DV   + LD    +  +V+ KK  E  + F +G+  K  + DF+  N
Sbjct:   180 AIDDIPFGITSNSDVFSKYQLD----KDGVVLFKKFDEGRNNF-EGEVTKEKLLDFIKHN 234

Query:   149 KLPLVTIFTRENAPSVFESPIKNQLLLFAVSN--DSEKLLPVFEEAAKSFKGKLIFVYVQ 206
             +LPLV  FT + AP +F   IK  +LLF   +  D E  L  F++AA+SFKGK++F+++ 
Sbjct:   235 QLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYEGKLSNFKKAAESFKGKILFIFID 294

Query:   207 MDNEDVGKPVSEYFGITGE-APKVLAYTGNDDAKKHILDG-ELTLDKIKTFGEDFLEGKL 264
              D+ D  + + E+FG+  E  P V   T  ++  K+  +  ELT +KI  F   FLEGK+
Sbjct:   295 SDHTD-NQRILEFFGLKKEECPAVRLITLEEEMTKYKPESDELTAEKITEFCHRFLEGKI 353

Query:   265 KPFFKSDPIPETNDGD-VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLA 323
             KP   S  +P+  D   VK++VG NF+E+  DE K+V +E YAPWCGHC+   P ++KL 
Sbjct:   354 KPHLMSQELPDDWDKQPVKVLVGKNFEEVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLG 413

Query:   324 KHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFL 383
             +  +  ++IVIAKMD T NE    K   FPT+ FFPA +     I+ + +RT+    KFL
Sbjct:   414 ETYKDHENIVIAKMDSTANEVEAVKVHSFPTLKFFPA-SADRTVIDYNGERTLDGFKKFL 472

Query:   384 K 384
             +
Sbjct:   473 E 473

GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0004656 "procollagen-proline 4-dioxygenase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

RGD|3244 P4hb "prolyl 4-hydroxylase, beta polypeptide" [Rattus norvegicus (taxid:10116)]

 Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
 Identities = 135/362 (37%), Positives = 203/362 (56%)

Query:    29 AAPSKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNSLVGSES-EVLADAS 87
             A    D IV W+KK+ GP    ++    AE ++ S    V+G+     GS+S +    A+
Sbjct:   120 AGREADDIVNWLKKRTGPAATTLSDTAAAESLVDSSEVTVIGFFKD-AGSDSAKQFLLAA 178

Query:    88 RLEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFADGKFDKSTIADFVFS 147
                DD+ F  T+N DV   + LD    +  +V+ KK  E  + F +G+  K  + DF+  
Sbjct:   179 EAVDDIPFGITSNSDVFSKYQLD----KDGVVLFKKFDEGRNNF-EGEITKEKLLDFIKH 233

Query:   148 NKLPLVTIFTRENAPSVFESPIKNQLLLFAVSN--DSEKLLPVFEEAAKSFKGKLIFVYV 205
             N+LPLV  FT + AP +F   IK  +LLF   +  D +  L  F++AA+ FKGK++F+++
Sbjct:   234 NQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKKAAEGFKGKILFIFI 293

Query:   206 QMDNEDVGKPVSEYFGITGE-APKVLAYTGNDDAKKHILDG-ELTLDKIKTFGEDFLEGK 263
               D+ D  + + E+FG+  E  P V   T  ++  K+  +  ELT +KI  F   FLEGK
Sbjct:   294 DSDHTD-NQRILEFFGLKKEECPAVRLITLEEEMTKYKPESDELTAEKITQFCHHFLEGK 352

Query:   264 LKPFFKSDPIPETNDGD-VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKL 322
             +KP   S  +PE  D   VK++VG NF+E+  DE K+V +E YAPWCGHC+   P ++KL
Sbjct:   353 IKPHLMSQELPEDWDKQPVKVLVGKNFEEVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKL 412

Query:   323 AKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKF 382
              +  +  ++IVIAKMD T NE    K   FPT+ FFPA +     I+ + +RT+    KF
Sbjct:   413 GETYKDHENIVIAKMDSTANEVEAVKVHSFPTLKFFPA-SADRTVIDYNGERTLDGFKKF 471

Query:   383 LK 384
             L+
Sbjct:   472 LE 473

GO:0003756 "protein disulfide isomerase activity" evidence=IMP

GO:0004656 "procollagen-proline 4-dioxygenase activity" evidence=IEA;ISO

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IEA;ISO

GO:0005886 "plasma membrane" evidence=IEA

GO:0006457 "protein folding" evidence=IMP

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0009986 "cell surface" evidence=IEA;ISO

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=IEA;ISO

GO:0042470 "melanosome" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IPI

UNIPROTKB|P07237 P4HB "Protein disulfide-isomerase" [Homo sapiens (taxid:9606)]

 Score = 579 (208.9 bits), Expect = 3.3e-56, P = 3.3e-56
 Identities = 131/361 (36%), Positives = 200/361 (55%)

Query:    29 AAPSKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNSLVGSESEVLADASR 88
             A    D IV W+KK+ GP    +     AE ++ S    V+G+   +    ++    A+ 
Sbjct:   118 AGREADDIVNWLKKRTGPAATTLPDGAAAESLVESSEVAVIGFFKDVESDSAKQFLQAAE 177

Query:    89 LEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFADGKFDKSTIADFVFSN 148
               DD+ F  T+N DV   + LD    +  +V+ KK  E  + F +G+  K  + DF+  N
Sbjct:   178 AIDDIPFGITSNSDVFSKYQLD----KDGVVLFKKFDEGRNNF-EGEVTKENLLDFIKHN 232

Query:   149 KLPLVTIFTRENAPSVFESPIKNQLLLFAVSN--DSEKLLPVFEEAAKSFKGKLIFVYVQ 206
             +LPLV  FT + AP +F   IK  +LLF   +  D +  L  F+ AA+SFKGK++F+++ 
Sbjct:   233 QLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFIFID 292

Query:   207 MDNEDVGKPVSEYFGITGE-APKVLAYTGNDDAKKHILDGE-LTLDKIKTFGEDFLEGKL 264
              D+ D  + + E+FG+  E  P V   T  ++  K+  + E LT ++I  F   FLEGK+
Sbjct:   293 SDHTD-NQRILEFFGLKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEGKI 351

Query:   265 KPFFKSDPIPETNDGD-VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLA 323
             KP   S  +PE  D   VK++VG NF+++  DE K+V +E YAPWCGHC+   P ++KL 
Sbjct:   352 KPHLMSQELPEDWDKQPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLG 411

Query:   324 KHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFL 383
             +  +  ++IVIAKMD T NE    K   FPT+ FFPA +     I+ + +RT+    KFL
Sbjct:   412 ETYKDHENIVIAKMDSTANEVEAVKVHSFPTLKFFPA-SADRTVIDYNGERTLDGFKKFL 470

Query:   384 K 384
             +
Sbjct:   471 E 471

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0003756 "protein disulfide isomerase activity" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0042470 "melanosome" evidence=IEA

GO:0009986 "cell surface" evidence=IDA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IDA

GO:0005576 "extracellular region" evidence=NAS

GO:0004656 "procollagen-proline 4-dioxygenase activity" evidence=IDA

GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=IDA

GO:0005788 "endoplasmic reticulum lumen" evidence=TAS

GO:0006629 "lipid metabolic process" evidence=TAS

GO:0030198 "extracellular matrix organization" evidence=TAS

GO:0042157 "lipoprotein metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0006457 "protein folding" evidence=TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

MGI|MGI:97464 P4hb "prolyl 4-hydroxylase, beta polypeptide" [Mus musculus (taxid:10090)]

 Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
 Identities = 130/361 (36%), Positives = 199/361 (55%)

Query:    29 AAPSKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNSLVGSESEVLADASR 88
             A    D IV W+KK+ GP    ++    AE ++ S    V+G+   +    ++    A+ 
Sbjct:   120 AGREADDIVNWLKKRTGPAATTLSDTAAAESLVDSSEVTVIGFFKDVESDSAKQFLLAAE 179

Query:    89 LEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFADGKFDKSTIADFVFSN 148
               DD+ F  T+N  V   + LD    +  +V+ KK  E  + F +G+  K  + DF+  N
Sbjct:   180 AIDDIPFGITSNSGVFSKYQLD----KDGVVLFKKFDEGRNNF-EGEITKEKLLDFIKHN 234

Query:   149 KLPLVTIFTRENAPSVFESPIKNQLLLFAVSN--DSEKLLPVFEEAAKSFKGKLIFVYVQ 206
             +LPLV  FT + AP +F   IK  +LLF   +  D +  L  F+ AA+ FKGK++F+++ 
Sbjct:   235 QLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSSFKRAAEGFKGKILFIFID 294

Query:   207 MDNEDVGKPVSEYFGITGE-APKVLAYTGNDDAKKHILDG-ELTLDKIKTFGEDFLEGKL 264
              D+ D  + + E+FG+  E  P V   T  ++  K+  +  ELT +KI  F   FLEGK+
Sbjct:   295 SDHTD-NQRILEFFGLKKEECPAVRLITLEEEMTKYKPESDELTAEKITEFCHRFLEGKI 353

Query:   265 KPFFKSDPIPETNDGD-VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLA 323
             KP   S  +PE  D   VK++VG NF+E+  DE K+V +E YAPWCGHC+   P ++KL 
Sbjct:   354 KPHLMSQEVPEDWDKQPVKVLVGANFEEVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLG 413

Query:   324 KHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFL 383
             +  +  ++I+IAKMD T NE    K   FPT+ FFPA +     I+ + +RT+    KFL
Sbjct:   414 ETYKDHENIIIAKMDSTANEVEAVKVHSFPTLKFFPA-SADRTVIDYNGERTLDGFKKFL 472

Query:   384 K 384
             +
Sbjct:   473 E 473

GO:0003756 "protein disulfide isomerase activity" evidence=ISO

GO:0004656 "procollagen-proline 4-dioxygenase activity" evidence=ISO

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=ISO

GO:0005886 "plasma membrane" evidence=IEA

GO:0006457 "protein folding" evidence=ISO

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0009986 "cell surface" evidence=ISO

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=ISO

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=IEA;ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q67IX6	PDI14_ORYSJ	5, ., 3, ., 4, ., 1	0.6320	0.9236	0.7087	yes	no
Q9FF55	PDI14_ARATH	5, ., 3, ., 4, ., 1	0.6905	0.9259	0.6700	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.3.4.1	0.914
3rd Layer	5.3.4	0.921

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_IX4753 SubName- Full=Putative uncharacterized protein; (584 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	432
TIGR01130	462	TIGR01130, ER_PDI_fam, protein disulfide isomerase	1e-114
PTZ00102	477	PTZ00102, PTZ00102, disulphide isomerase; Provisio	2e-53
cd02995	104	cd02995, PDI_a_PDI_a'_C, PDIa family, C-terminal T	1e-48
cd02961	101	cd02961, PDI_a_family, Protein Disulfide Isomerase	4e-29
TIGR01126	102	TIGR01126, pdi_dom, protein disulfide-isomerase do	5e-28
cd02998	105	cd02998, PDI_a_ERp38, PDIa family, endoplasmic ret	4e-27
pfam00085	104	pfam00085, Thioredoxin, Thioredoxin	2e-24
pfam13848	183	pfam13848, Thioredoxin_6, Thioredoxin-like domain	3e-22
cd03001	103	cd03001, PDI_a_P5, PDIa family, P5 subfamily; comp	3e-18
cd03002	109	cd03002, PDI_a_MPD1_like, PDI family, MPD1-like su	2e-15
cd03005	102	cd03005, PDI_a_ERp46, PDIa family, endoplasmic ret	1e-14
cd02982	103	cd02982, PDI_b'_family, Protein Disulfide Isomeras	7e-14
cd03004	104	cd03004, PDI_a_ERdj5_C, PDIa family, C-terminal ER	2e-13
cd02993	109	cd02993, PDI_a_APS_reductase, PDIa family, 5'-Aden	3e-13
cd02992	114	cd02992, PDI_a_QSOX, PDIa family, Quiescin-sulfhyd	3e-13
cd02997	104	cd02997, PDI_a_PDIR, PDIa family, PDIR subfamily;	7e-13
PTZ00102	477	PTZ00102, PTZ00102, disulphide isomerase; Provisio	3e-12
TIGR01130	462	TIGR01130, ER_PDI_fam, protein disulfide isomerase	5e-12
cd02981	97	cd02981, PDI_b_family, Protein Disulfide Isomerase	9e-12
TIGR01068	101	TIGR01068, thioredoxin, thioredoxin	1e-10
cd02947	93	cd02947, TRX_family, TRX family; composed of two g	5e-10
cd03000	104	cd03000, PDI_a_TMX3, PDIa family, TMX3 subfamily;	6e-10
PLN02309	457	PLN02309, PLN02309, 5'-adenylylsulfate reductase	3e-09
PTZ00443	224	PTZ00443, PTZ00443, Thioredoxin domain-containing	1e-07
TIGR00424	463	TIGR00424, APS_reduc, 5'-adenylylsulfate reductase	6e-07
pfam13899	81	pfam13899, Thioredoxin_7, Thioredoxin-like	3e-06
cd01659	69	cd01659, TRX_superfamily, Thioredoxin (TRX) superf	8e-06
COG0526	127	COG0526, TrxA, Thiol-disulfide isomerase and thior	3e-05
cd02994	101	cd02994, PDI_a_TMX, PDIa family, TMX subfamily; co	4e-05
COG3118	304	COG3118, COG3118, Thioredoxin domain-containing pr	4e-05
cd03003	101	cd03003, PDI_a_ERdj5_N, PDIa family, N-terminal ER	8e-05
PRK10996	139	PRK10996, PRK10996, thioredoxin 2; Provisional	8e-05
COG4232	569	COG4232, COG4232, Thiol:disulfide interchange prot	9e-05
PRK09381	109	PRK09381, trxA, thioredoxin; Provisional	1e-04
cd02953	104	cd02953, DsbDgamma, DsbD gamma family; DsbD gamma	2e-04
cd02999	100	cd02999, PDI_a_ERp44_like, PDIa family, endoplasmi	0.002
cd03011	123	cd03011, TlpA_like_ScsD_MtbDsbE, TlpA-like family,	0.003

>gnl|CDD|233282 TIGR01130, ER_PDI_fam, protein disulfide isomerase, eukaryotic

 Score =  343 bits (881), Expect = e-114
 Identities = 140/366 (38%), Positives = 200/366 (54%), Gaps = 8/366 (2%)

Query: 32  SKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNSLVGSESEVLADASRLED 91
             D IV ++KK+ GP +  I T+ + E  L  +  VV+G+   L    ++     +    
Sbjct: 97  DADGIVKYMKKQSGPAVKEIETVADLEAFLADDDVVVIGFFKDLDSELNDTFLSVAEKLR 156

Query: 92  DVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFA-DGKFDKSTIADFVFSNKL 150
           DV F+   + DVA    L +  +   L   K E EK S    +   D S +  F+ +  L
Sbjct: 157 DVYFFFAHSSDVAAFAKLGAFPDSVVLFKPKDEDEKFSKVDGEMDTDVSDLEKFIRAESL 216

Query: 151 PLVTIFTRENAPSVFESPIKNQLLLFA--VSNDSEKLLPVFEEAAKSFKGKLIFVYVQMD 208
           PLV  FT+E A   FES     L        +  E+L   F EAAK F+G   FV   + 
Sbjct: 217 PLVGEFTQETAAKYFESGPLVVLYYNVDESLDPFEELRNRFLEAAKKFRG--KFVNFAVA 274

Query: 209 NEDVGKPVSEYFGITGE-APKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLKPF 267
           +E+      EYFG+  E  P V       + K  +   E + + ++ F +DFL+GKLKP+
Sbjct: 275 DEEDFGRELEYFGLKAEKFPAVAIQDLEGNKKYPMDQEEFSSENLEAFVKDFLDGKLKPY 334

Query: 268 FKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLR 327
            KS+PIPE ++G VK++VG NFDEIVLDE+KDVL+E YAPWCGHC+   P Y +LA+  +
Sbjct: 335 LKSEPIPEDDEGPVKVLVGKNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYK 394

Query: 328 GVDS-IVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKN 386
             +S +VIAKMD T N+    + +GFPTI F PAG KS +P+  D DRT+    KF+ K+
Sbjct: 395 DAESDVVIAKMDATANDVPPFEVEGFPTIKFVPAGKKS-EPVPYDGDRTLEDFSKFIAKH 453

Query: 387 ASIPFK 392
           A+ P +
Sbjct: 454 ATFPLE 459

This model represents eukaryotic protein disulfide isomerases retained in the endoplasmic reticulum (ER) and closely related forms. Some members have been assigned alternative or additional functions such as prolyl 4-hydroxylase and dolichyl-diphosphooligosaccharide-protein glycotransferase. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs). Length = 462

>gnl|CDD|240266 PTZ00102, PTZ00102, disulphide isomerase; Provisional

 Score =  184 bits (470), Expect = 2e-53
 Identities = 120/374 (32%), Positives = 182/374 (48%), Gaps = 36/374 (9%)

Query: 32  SKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNSLVGSES----EVLADAS 87
           + D IV+WIKK  GP +  + +  E  +++  +  V      +   SE     E +AD  
Sbjct: 126 TADGIVSWIKKLTGPAVTEVESASE-IKLIAKKIFVAFYGEYTSKDSELYKKFEEVADKH 184

Query: 88  RLEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFADGKFDKSTIADFVFS 147
           R  +   F+   +    KI+            ++ K+ E +  F     ++  + +FV +
Sbjct: 185 R--EHAKFFVKKHEGKNKIY------------VLHKDEEGVELFMGKTKEE--LEEFVST 228

Query: 148 NKLPLVTIFTRENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQM 207
              PL      EN      S  K+ +     + D +K   V  + A+  + K  FV++  
Sbjct: 229 ESFPLFAEINAENYRRYISSG-KDLVWFCGTTEDYDKYKSVVRKVARKLREKYAFVWL-- 285

Query: 208 DNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGE----LTLDKIKTFGEDFLEGK 263
           D E  G    E+  I  E P  LAY     A +++L        +++ +  F +D   GK
Sbjct: 286 DTEQFGSHAKEHLLIE-EFPG-LAYQSP--AGRYLLPPAKESFDSVEALIEFFKDVEAGK 341

Query: 264 LKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLA 323
           ++   KS+PIPE  DG VK+VVGN F+EIV    KDVLLEIYAPWCGHC+  EP YN+L 
Sbjct: 342 VEKSIKSEPIPEEQDGPVKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELG 401

Query: 324 KHLRGVDSIVIAKMDGTTNE--HHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYK 381
           +  +  DSI++AKM+GT NE          FPTILF  AG +   PI  + +RTV    +
Sbjct: 402 EKYKDNDSIIVAKMNGTANETPLEEFSWSAFPTILFVKAGER--TPIPYEGERTVEGFKE 459

Query: 382 FLKKNASIPFKIQK 395
           F+ K+A+ PF+   
Sbjct: 460 FVNKHATNPFEDDT 473

Length = 477

>gnl|CDD|239293 cd02995, PDI_a_PDI_a'_C, PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

 Score =  160 bits (408), Expect = 1e-48
 Identities = 63/104 (60%), Positives = 78/104 (75%), Gaps = 2/104 (1%)

Query: 281 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 340
           VK+VVG NFDE+VLD  KDVL+E YAPWCGHC+A  P Y +LA+ L+G D++VIAKMD T
Sbjct: 2   VKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDAT 61

Query: 341 TNEHHRAK-SDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFL 383
            N+       DGFPTILFFPAG+KS +PI  + DRT+  L KF+
Sbjct: 62  ANDVPSEFVVDGFPTILFFPAGDKS-NPIKYEGDRTLEDLIKFI 104

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins, while PDI shows a wider substrate specificity. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. EFP1 is a binding partner protein of thyroid oxidase, which is responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. Length = 104

>gnl|CDD|239259 cd02961, PDI_a_family, Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

 Score =  109 bits (274), Expect = 4e-29
 Identities = 48/104 (46%), Positives = 66/104 (63%), Gaps = 5/104 (4%)

Query: 282 KIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT 341
             +  +NFDE+V D SKDVL+E YAPWCGHC+A  P Y KLAK L+G   +V+AK+D T 
Sbjct: 1   VELTDDNFDELVKD-SKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA 59

Query: 342 NE--HHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFL 383
           N          G+PTI  FP G+K  +P+  +  RT+ +L +F+
Sbjct: 60  NNDLCSEYGVRGYPTIKLFPNGSK--EPVKYEGPRTLESLVEFI 101

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies are necessary for the isomerase function. The different types of PDIs may show different substrate specificities and tissue-specific expression, or may be induced by stress. PDIs are in their reduced form at steady state and are oxidized to the active form by Ero1, which is localized in the ER through ERp44. Some members of this family also contain a DnaJ domain in addition to the redox active a domains; examples are ERdj5 and Pfj2. Also included in the family is the redox inactive N-terminal TRX-like domain of ERp29. Length = 101

>gnl|CDD|200074 TIGR01126, pdi_dom, protein disulfide-isomerase domain

 Score =  106 bits (266), Expect = 5e-28
 Identities = 48/106 (45%), Positives = 66/106 (62%), Gaps = 6/106 (5%)

Query: 284 VVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE 343
           +  +NFDEIVL  +KDVL+E YAPWCGHC+   P Y KLAK L+    IV+AK+D T  +
Sbjct: 1   LTASNFDEIVLS-NKDVLVEFYAPWCGHCKNLAPEYEKLAKELKKDPDIVLAKVDATAEK 59

Query: 344 --HHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA 387
               R    GFPTI FFP G K   P++ +  R + A+ +F+ + +
Sbjct: 60  DLASRFGVSGFPTIKFFPKGKK---PVDYEGGRDLEAIVEFVNEKS 102

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK [Protein fate, Protein folding and stabilization]. Length = 102

>gnl|CDD|239296 cd02998, PDI_a_ERp38, PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

 Score =  103 bits (260), Expect = 4e-27
 Identities = 43/107 (40%), Positives = 61/107 (57%), Gaps = 5/107 (4%)

Query: 280 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG 339
           +V  +  +NFD++V D+ KDVL+E YAPWCGHC+   P Y KLA      D +VIAK+D 
Sbjct: 1   NVVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDA 60

Query: 340 TTNEH---HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFL 383
                    +    GFPT+ FFP G+   +P+  +  R +  L KF+
Sbjct: 61  DEANKDLAKKYGVSGFPTLKFFPKGST--EPVKYEGGRDLEDLVKFV 105

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ERp38, respectively. Also included in the alignment is an atypical PDI from Leishmania donovani containing a single a domain, and the C-terminal a domain of a P5-like protein from Entamoeba histolytica. Length = 105

>gnl|CDD|215704 pfam00085, Thioredoxin, Thioredoxin

 Score = 96.5 bits (241), Expect = 2e-24
 Identities = 43/109 (39%), Positives = 57/109 (52%), Gaps = 7/109 (6%)

Query: 280 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG 339
            VK++   NFDE V    K VL++ YAPWCG C+A  P Y KLA+  +  D +  AK+D 
Sbjct: 1   VVKVLTDENFDEEVAKSDKPVLVDFYAPWCGPCKALAPEYEKLAQEYK--DDVKFAKVDA 58

Query: 340 TTNEHHRAKSD--GFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKN 386
             N    ++    GFPTI FF  G K     +    RT   L  F+KK+
Sbjct: 59  DENPDLASEYGVRGFPTIKFFKNGKK---VSDYVGARTKDDLVAFIKKH 104

Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Some members with only the active site are not separated from the noise. Length = 104

>gnl|CDD|222416 pfam13848, Thioredoxin_6, Thioredoxin-like domain

 Score = 92.8 bits (231), Expect = 3e-22
 Identities = 57/174 (32%), Positives = 84/174 (48%), Gaps = 13/174 (7%)

Query: 86  ASRLEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKI-SYFADGKFDKSTIADF 144
           A  L  DV F  T + +VAK + +      P +++ +K  EK  +Y  + K     +  F
Sbjct: 16  AKELRGDVRFGVTFDKEVAKKYGIKE----PTILLFRKFDEKQVTYPGEDKTTFDDLKKF 71

Query: 145 VFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVSNDS--EKLLPVFEEAAKSFKGKLIF 202
           +  N LPLV  FT ENA  +FES     LLLF   +    EKL    EE AK FKGK+ F
Sbjct: 72  IQKNSLPLVGEFTPENAEELFESGK--PLLLFIKKDSEETEKLKNRVEEVAKKFKGKINF 129

Query: 203 VYVQMDNEDVGKPVSEYFGITGEA-PKVLAYTGNDDAKKHILDGELTLDKIKTF 255
             V  D +  G+ + EY G++    P ++        KK+  + E + + +K F
Sbjct: 130 ATV--DGKSFGRVL-EYLGLSSADLPVIVIVDSASHKKKYFPEDEFSPESLKEF 180

Length = 183

>gnl|CDD|239299 cd03001, PDI_a_P5, PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

 Score = 79.6 bits (197), Expect = 3e-18
 Identities = 38/107 (35%), Positives = 52/107 (48%), Gaps = 10/107 (9%)

Query: 280 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG 339
           DV  +  +NFD+ VL+     L+E YAPWCGHC+   P + K AK L+G+  + +  +D 
Sbjct: 1   DVVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGI--VKVGAVDA 58

Query: 340 TTNEHHRAKSD----GFPTILFFPAGNKSFDPINVDVDRTVVALYKF 382
               H          GFPTI  F AG  S  P +    RT  A+   
Sbjct: 59  D--VHQSLAQQYGVRGFPTIKVFGAGKNS--PQDYQGGRTAKAIVSA 101

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain. Length = 103

>gnl|CDD|239300 cd03002, PDI_a_MPD1_like, PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

 Score = 71.6 bits (176), Expect = 2e-15
 Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 4/101 (3%)

Query: 288 NFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRA 347
           NFD++V + +   L+E YAPWCGHC+  +P Y K AK L G+  +     D   N+    
Sbjct: 9   NFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCG 68

Query: 348 KSD--GFPTILFFPAGNKSFDPINVDV--DRTVVALYKFLK 384
           K    GFPT+  F    K+      D   +R+  A+  F+ 
Sbjct: 69  KYGVQGFPTLKVFRPPKKASKHAVEDYNGERSAKAIVDFVL 109

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity. Length = 109

>gnl|CDD|239303 cd03005, PDI_a_ERp46, PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

 Score = 69.2 bits (170), Expect = 1e-14
 Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 11/85 (12%)

Query: 286 GNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIV-IAKMDGTT--- 341
            +NFD  +     +  ++ +APWCGHC+   PT+ +LAK     +  V IAK+D T    
Sbjct: 7   EDNFDHHI--AEGNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRE 64

Query: 342 --NEHHRAKSDGFPTILFFPAGNKS 364
             +E    +  G+PT+L F  G K 
Sbjct: 65  LCSEF---QVRGYPTLLLFKDGEKV 86

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia. Length = 102

>gnl|CDD|239280 cd02982, PDI_b'_family, Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

 Score = 66.9 bits (164), Expect = 7e-14
 Identities = 42/106 (39%), Positives = 57/106 (53%), Gaps = 8/106 (7%)

Query: 160 NAPSVFESPI--KNQLLLFAVSND--SEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKP 215
           NA + F      K  L+LF   +D  SE+L   F+E AK FKGKL+FV V   + D    
Sbjct: 1   NAETFFNYEESGKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVV---DADDFGR 57

Query: 216 VSEYFGITGEAPKVLAYTGNDDAKKHILDGE-LTLDKIKTFGEDFL 260
             EYFG+  E   V+A     D KK+++  E LT + ++ F EDFL
Sbjct: 58  HLEYFGLKEEDLPVIAIINLSDGKKYLMPEEELTAESLEEFVEDFL 103

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contains only redox-inactive TRX-like (b and b') domains. The redox inactive domains are implicated in substrate recognition with the b' domain serving as the primary substrate binding site. Only the b' domain is necessary for the binding of small peptide substrates. In addition to the b' domain, other domains are required for the binding of larger polypeptide substrates. The b' domain is also implicated in chaperone activity. Length = 103

>gnl|CDD|239302 cd03004, PDI_a_ERdj5_C, PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

 Score = 65.8 bits (161), Expect = 2e-13
 Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 4/80 (5%)

Query: 288 NFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--H 345
           +F E+VL+  +  L++ YAPWCG CQA  P   K A+ L+G   + +  +D    E    
Sbjct: 10  DFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKG--KVKVGSVDCQKYESLCQ 67

Query: 346 RAKSDGFPTILFFPAGNKSF 365
           +A    +PTI  +P     +
Sbjct: 68  QANIRAYPTIRLYPGNASKY 87

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus. Length = 104

>gnl|CDD|239291 cd02993, PDI_a_APS_reductase, PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

 Score = 65.6 bits (160), Expect = 3e-13
 Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 5/72 (6%)

Query: 298 KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDG----FP 353
           +  L+ +YAPWC  CQA E +Y +LA+ L G  ++ +AK +    +   AK +     FP
Sbjct: 22  QSTLVVLYAPWCPFCQAMEASYEELAEKLAG-SNVKVAKFNADGEQREFAKEELQLKSFP 80

Query: 354 TILFFPAGNKSF 365
           TILFFP  ++  
Sbjct: 81  TILFFPKNSRQP 92

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH -> C-terminal TRX domain -> N-terminal reductase domain -> APS. Plant-type APS reductase shows no homology to that of dissimilatory sulfate-reducing bacteria, which is an iron-sulfur flavoenzyme. Also included in the alignment is EYE2 from Chlamydomonas reinhardtii, a protein required for eyespot assembly. Length = 109

>gnl|CDD|239290 cd02992, PDI_a_QSOX, PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

 Score = 65.4 bits (160), Expect = 3e-13
 Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 11/87 (12%)

Query: 288 NFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIV-IAKMD-------G 339
           +F+  +L      L+E YA WCGHC+AF PT+ KLA+ LR    +V +A +D        
Sbjct: 10  SFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVA 69

Query: 340 TTNEHHRAKSDGFPTILFFPAGNKSFD 366
              +       G+PT+ +FP  +K   
Sbjct: 70  LCRDF---GVTGYPTLRYFPPFSKEAT 93

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate -> dithiol of the QSOX TRX domain -> dithiols of the QSOX ERV1p domain -> FAD -> oxygen. Length = 114

>gnl|CDD|239295 cd02997, PDI_a_PDIR, PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

 Score = 64.3 bits (157), Expect = 7e-13
 Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 5/91 (5%)

Query: 280 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG 339
           DV  +   +F +  L + K VL+  YAPWCGHC+  +P + K A  L+     V+A +D 
Sbjct: 1   DVVHLTDEDFRKF-LKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDC 59

Query: 340 TTNEHHRAKSD----GFPTILFFPAGNKSFD 366
           T  EH   K +    GFPT  +F  G     
Sbjct: 60  TKPEHDALKEEYNVKGFPTFKYFENGKFVEK 90

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. Length = 104

>gnl|CDD|240266 PTZ00102, PTZ00102, disulphide isomerase; Provisional

 Score = 67.9 bits (166), Expect = 3e-12
 Identities = 40/109 (36%), Positives = 58/109 (53%), Gaps = 8/109 (7%)

Query: 280 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDS-IVIAKMD 338
            V ++  + FD+  + E++ VL++ YAPWCGHC+   P Y K AK L+   S IV+A +D
Sbjct: 33  HVTVLTDSTFDKF-ITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVD 91

Query: 339 GTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKK 385
            T            G+PTI FF  GN    P+N    RT   +  ++KK
Sbjct: 92  ATEEMELAQEFGVRGYPTIKFFNKGN----PVNYSGGRTADGIVSWIKK 136

Length = 477

>gnl|CDD|233282 TIGR01130, ER_PDI_fam, protein disulfide isomerase, eukaryotic

 Score = 67.0 bits (164), Expect = 5e-12
 Identities = 35/101 (34%), Positives = 52/101 (51%), Gaps = 6/101 (5%)

Query: 288 NFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDS-IVIAKMDGTTNEHHR 346
           NFD+  +   + VL+E YAPWCGHC++  P Y K A  L+     I +AK+D T  +   
Sbjct: 10  NFDD-FIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLA 68

Query: 347 AKSD--GFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKK 385
            K    G+PT+  F  G  S    + +  R    + K++KK
Sbjct: 69  QKYGVSGYPTLKIFRNGEDS--VSDYNGPRDADGIVKYMKK 107

This model represents eukaryotic protein disulfide isomerases retained in the endoplasmic reticulum (ER) and closely related forms. Some members have been assigned alternative or additional functions such as prolyl 4-hydroxylase and dolichyl-diphosphooligosaccharide-protein glycotransferase. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs). Length = 462

>gnl|CDD|239279 cd02981, PDI_b_family, Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

 Score = 60.8 bits (148), Expect = 9e-12
 Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 6/102 (5%)

Query: 48  IYNITTLDEAERVLTSETKVVLGYLNSLVGSESEVLAD-ASRLEDDVNFYQTTNPDVAKI 106
           +  +T+ +E E+ L  +  VV+G+       E +     A  L DD  F  T++ +VAK 
Sbjct: 1   VKELTSKEELEKFLDKDDVVVVGFFKDEESEEYKTFEKVAESLRDDYGFGHTSDKEVAKK 60

Query: 107 FHLDSKVNRPALVMVKKETEKISYFADGKFDKSTIADFVFSN 148
                KV   ++V+ K   E+   + DG+F + ++ +F+  N
Sbjct: 61  L----KVKPGSVVLFKPFEEEPVEY-DGEFTEESLVEFIKDN 97

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contains only redox-inactive TRX-like (b and b') domains. The redox inactive b domains are implicated in substrate recognition. Length = 97

>gnl|CDD|200072 TIGR01068, thioredoxin, thioredoxin

 Score = 57.7 bits (140), Expect = 1e-10
 Identities = 33/109 (30%), Positives = 50/109 (45%), Gaps = 21/109 (19%)

Query: 288 NFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHH-- 345
           NFDE +    K VL++ +APWCG C+   P   +LAK   G   +   K++   +E+   
Sbjct: 5   NFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEG--KVKFVKLN--VDENPDI 60

Query: 346 --RAKSDGFPTILFFPAGNKSFDPINVDVDRTV-----VALYKFLKKNA 387
             +      PT+L F  G +        VDR+V      AL + + KN 
Sbjct: 61  AAKYGIRSIPTLLLFKNGKE--------VDRSVGALPKAALKQLINKNL 101

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by This model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin [Energy metabolism, Electron transport]. Length = 101

>gnl|CDD|239245 cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

 Score = 55.6 bits (135), Expect = 5e-10
 Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 10/75 (13%)

Query: 288 NFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRA 347
            F+E++   +K V+++ +APWCG C+A  P   +LA+       +   K+D   +E+   
Sbjct: 2   EFEELI-KSAKPVVVDFWAPWCGPCKAIAPVLEELAEEY---PKVKFVKVD--VDENPEL 55

Query: 348 KSD----GFPTILFF 358
             +      PT LFF
Sbjct: 56  AEEYGVRSIPTFLFF 70

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins. Length = 93

>gnl|CDD|239298 cd03000, PDI_a_TMX3, PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

 Score = 55.9 bits (135), Expect = 6e-10
 Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 15/85 (17%)

Query: 294 LDES-KDV------LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIV-IAKMDGTTNEHH 345
           LD+S KDV      L++ YAPWCGHC+  EP +N++   L+   S V + K+D T   + 
Sbjct: 5   LDDSFKDVRKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATA--YS 62

Query: 346 RAKSD----GFPTILFFPAGNKSFD 366
              S+    G+PTI     G+ +++
Sbjct: 63  SIASEFGVRGYPTIKLL-KGDLAYN 86

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase. Length = 104

>gnl|CDD|215175 PLN02309, PLN02309, 5'-adenylylsulfate reductase

 Score = 58.3 bits (141), Expect = 3e-09
 Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 5/73 (6%)

Query: 297 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSD----GF 352
            +  L+ +YAPWC  CQA E +Y +LA+ L G   + +AK     ++   AK +     F
Sbjct: 365 KEPWLVVLYAPWCPFCQAMEASYEELAEKLAG-SGVKVAKFRADGDQKEFAKQELQLGSF 423

Query: 353 PTILFFPAGNKSF 365
           PTIL FP  +   
Sbjct: 424 PTILLFPKNSSRP 436

Length = 457

>gnl|CDD|185622 PTZ00443, PTZ00443, Thioredoxin domain-containing protein; Provisional

 Score = 51.9 bits (124), Expect = 1e-07
 Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 4/63 (6%)

Query: 301 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFF 358
            ++ YAPWC HC+   P + +LAK L+G   + +A +D T   +   R    G+PT+L F
Sbjct: 56  FVKFYAPWCSHCRKMAPAWERLAKALKGQ--VNVADLDATRALNLAKRFAIKGYPTLLLF 113

Query: 359 PAG 361
             G
Sbjct: 114 DKG 116

Length = 224

>gnl|CDD|232970 TIGR00424, APS_reduc, 5'-adenylylsulfate reductase, thioredoxin-independent

 Score = 51.2 bits (122), Expect = 6e-07
 Identities = 37/96 (38%), Positives = 52/96 (54%), Gaps = 9/96 (9%)

Query: 294 LDESKDV-LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSD-- 350
           L+E K+  L+ +YAPWC  CQA E +Y +LA+ L G   + +AK     ++   AK +  
Sbjct: 367 LEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAG-SGVKVAKFRADGDQKEFAKQELQ 425

Query: 351 --GFPTILFFPAGNKSFDPINVDVD-RTVVALYKFL 383
              FPTILFFP    S  PI    + R V +L  F+
Sbjct: 426 LGSFPTILFFP--KHSSRPIKYPSEKRDVDSLMSFV 459

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis [Central intermediary metabolism, Sulfur metabolism]. Length = 463

>gnl|CDD|222442 pfam13899, Thioredoxin_7, Thioredoxin-like

 Score = 44.6 bits (106), Expect = 3e-06
 Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 13/74 (17%)

Query: 294 LDESKDVLLEIYAPWCGHCQAFE------PTYNKLAKHLRGVDSIVIAKMDGTT-NEHHR 346
            +E K +L++  A WC  CQA +      P    LA+        V+ ++D TT + +  
Sbjct: 14  REEGKPLLVDFGADWCPTCQALDRDFLSDPRVKALAEK------FVLLRVDVTTRDPNLL 67

Query: 347 AKSDGFPTILFFPA 360
               G P ++F   
Sbjct: 68  LDGQGVPHVVFLDP 81

Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Length = 81

>gnl|CDD|238829 cd01659, TRX_superfamily, Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

 Score = 43.1 bits (101), Expect = 8e-06
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 8/68 (11%)

Query: 301 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAK-----SDGFPTI 355
           L+  YAPWC  CQA  P   +LA   +GV       +D   +     +       G PT+
Sbjct: 1   LVLFYAPWCPFCQALRPVLAELALLNKGV---KFEAVDVDEDPALEKELKRYGVGGVPTL 57

Query: 356 LFFPAGNK 363
           + F  G  
Sbjct: 58  VVFGPGIG 65

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others. Length = 69

>gnl|CDD|223600 COG0526, TrxA, Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

 Score = 43.3 bits (101), Expect = 3e-05
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 3/64 (4%)

Query: 298 KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRG---VDSIVIAKMDGTTNEHHRAKSDGFPT 354
           K VL++ +APWC  C+A  P   +LA+   G   V ++ +   +              PT
Sbjct: 33  KPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPT 92

Query: 355 ILFF 358
           +L F
Sbjct: 93  LLLF 96

Length = 127

>gnl|CDD|239292 cd02994, PDI_a_TMX, PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

 Score = 42.0 bits (99), Expect = 4e-05
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 4/64 (6%)

Query: 279 GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD 338
            +V  +  +N+  ++  E    ++E YAPWC  CQ  +P + + A     +  I +AK+D
Sbjct: 1   SNVVELTDSNWTLVLEGEW---MIEFYAPWCPACQQLQPEWEEFADWSDDLG-INVAKVD 56

Query: 339 GTTN 342
            T  
Sbjct: 57  VTQE 60

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC. Length = 101

>gnl|CDD|225660 COG3118, COG3118, Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 4/60 (6%)

Query: 281 VKIVVGNNFDEIVLDESKD--VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD 338
           +K V   NF++ V+  S++  VL++ +APWCG C+   PT  KLA   +G     +AK++
Sbjct: 25  IKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKG--KFKLAKVN 82

Length = 304

>gnl|CDD|239301 cd03003, PDI_a_ERdj5_N, PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

 Score = 41.4 bits (97), Expect = 8e-05
 Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 7/80 (8%)

Query: 305 YAPWCGHCQAFEPTYNKLAKHLRGVDSI--VIAKMDGTTNEHHRAKSDGFPTILFFPAGN 362
           Y+P C HC    PT+ + AK + GV  I  V    D          S  +P++  FP+G 
Sbjct: 26  YSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNS--YPSLYVFPSGM 83

Query: 363 KSFDPINVDVDRTVVALYKF 382
               P     DR+  +L KF
Sbjct: 84  N---PEKYYGDRSKESLVKF 100

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Length = 101

>gnl|CDD|182889 PRK10996, PRK10996, thioredoxin 2; Provisional

 Score = 42.0 bits (99), Expect = 8e-05
 Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 12/97 (12%)

Query: 278 DGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKM 337
           DG+V    G   D++ L +   V+++ +APWCG C+ F P +  +A    G   +   K+
Sbjct: 34  DGEVINATGETLDKL-LQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG--KVRFVKV 90

Query: 338 DGTTNEHHRAKSDGF-----PTILFFPAGNKSFDPIN 369
           +    E  R  S  F     PTI+ F  G +  D +N
Sbjct: 91  N---TEAERELSARFRIRSIPTIMIFKNG-QVVDMLN 123

Length = 139

>gnl|CDD|226685 COG4232, COG4232, Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

 Score = 44.3 bits (105), Expect = 9e-05
 Identities = 20/76 (26%), Positives = 29/76 (38%), Gaps = 14/76 (18%)

Query: 298 KDVLLEIYAPWCGHCQAFEP-TYNKLAKHLRGVDSIVIAKMDGTTN---------EHHRA 347
           K V+L+ YA WC  C+  E  T++        +  +V+ + D T N              
Sbjct: 475 KPVMLDFYADWCVTCKENEKYTFSDPQVQQA-LQDVVLLQADVTANDPAITALLKRLGVF 533

Query: 348 KSDGFPTILFFPAGNK 363
              G PT LFF     
Sbjct: 534 ---GVPTYLFFGPQGS 546

Length = 569

>gnl|CDD|181812 PRK09381, trxA, thioredoxin; Provisional

 Score = 40.8 bits (95), Expect = 1e-04
 Identities = 20/75 (26%), Positives = 36/75 (48%)

Query: 287 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 346
           ++FD  VL     +L++ +A WCG C+   P  +++A   +G  ++    +D       +
Sbjct: 11  DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 70

Query: 347 AKSDGFPTILFFPAG 361
               G PT+L F  G
Sbjct: 71  YGIRGIPTLLLFKNG 85

Length = 109

>gnl|CDD|239251 cd02953, DsbDgamma, DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 19/83 (22%), Positives = 27/83 (32%), Gaps = 25/83 (30%)

Query: 296 ESKDVLLEIYAPWCGHCQAFE-------PTYNKLAKHLRGVDSIVIAKMDGTTN------ 342
           + K V ++  A WC  C+  E            L K       +V+ + D T N      
Sbjct: 10  QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKD------VVLLRADWTKNDPEITA 63

Query: 343 ---EHHRAKSDGFPTILFFPAGN 362
                      G PT LF+  G 
Sbjct: 64  LLKRFGVF---GPPTYLFYGPGG 83

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes. Length = 104

>gnl|CDD|239297 cd02999, PDI_a_ERp44_like, PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

 Score = 37.0 bits (86), Expect = 0.002
 Identities = 22/87 (25%), Positives = 30/87 (34%), Gaps = 25/87 (28%)

Query: 289 FDEIVLDESKD---------VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG 339
             E VL+ + D           +  YA WC    +F P +N L+     +  + I     
Sbjct: 1   PPEEVLNIALDLMAFNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAI----- 55

Query: 340 TTNEHHRAKSD--------GFPTILFF 358
              E    K          GFPTIL F
Sbjct: 56  ---EESSIKPSLLSRYGVVGFPTILLF 79

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER. Length = 100

>gnl|CDD|239309 cd03011, TlpA_like_ScsD_MtbDsbE, TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

 Score = 37.3 bits (87), Expect = 0.003
 Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 7/73 (9%)

Query: 286 GNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT---TN 342
           G  FD   L   K VL+  +A WC  C+   PT N+LA        + +A   G      
Sbjct: 10  GEQFDLESLS-GKPVLVYFWATWCPVCRFTSPTVNQLAAD---YPVVSVALRSGDDGAVA 65

Query: 343 EHHRAKSDGFPTI 355
              + K  GFP I
Sbjct: 66  RFMQKKGYGFPVI 78

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c. Length = 123

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	432
KOG0190	493	consensus Protein disulfide isomerase (prolyl 4-hy	100.0
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	100.0
PTZ00102	477	disulphide isomerase; Provisional	100.0
KOG0912	375	consensus Thiol-disulfide isomerase and thioredoxi	99.95
PF01216	383	Calsequestrin: Calsequestrin; InterPro: IPR001393	99.91
PF13848	184	Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_	99.9
KOG0191	383	consensus Thioredoxin/protein disulfide isomerase	99.9
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	99.81
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	99.8
KOG0910	150	consensus Thioredoxin-like protein [Posttranslatio	99.79
KOG4277	468	consensus Uncharacterized conserved protein, conta	99.79
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	99.78
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	99.77
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	99.77
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	99.76
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	99.76
KOG0191	383	consensus Thioredoxin/protein disulfide isomerase	99.75
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	99.75
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	99.72
COG3118	304	Thioredoxin domain-containing protein [Posttransla	99.72
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	99.71
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	99.71
PRK09381	109	trxA thioredoxin; Provisional	99.71
PTZ00102	477	disulphide isomerase; Provisional	99.7
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	99.7
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	99.69
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	99.69
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	99.69
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	99.68
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	99.68
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	99.67
cd03007	116	PDI_a_ERp29_N PDIa family, endoplasmic reticulum p	99.67
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	99.66
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	99.65
PHA02278	103	thioredoxin-like protein	99.65
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	99.65
KOG0190	493	consensus Protein disulfide isomerase (prolyl 4-hy	99.63
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	99.63
PRK10996	139	thioredoxin 2; Provisional	99.62
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	99.61
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	99.61
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	99.6
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	99.6
TIGR00424	463	APS_reduc 5'-adenylylsulfate reductase, thioredoxi	99.6
PLN02309	457	5'-adenylylsulfate reductase	99.6
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	99.59
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	99.59
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	99.58
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	99.57
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	99.57
KOG0907	106	consensus Thioredoxin [Posttranslational modificat	99.55
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	99.55
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	99.54
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	99.52
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	99.51
KOG4277	468	consensus Uncharacterized conserved protein, conta	99.5
cd03072	111	PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second	99.5
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	99.49
cd02988	192	Phd_like_VIAF Phosducin (Phd)-like family, Viral i	99.47
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	99.46
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	99.46
KOG0912	375	consensus Thiol-disulfide isomerase and thioredoxi	99.45
KOG0908	288	consensus Thioredoxin-like protein [Posttranslatio	99.45
cd02986	114	DLP Dim1 family, Dim1-like protein (DLP) subfamily	99.44
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	99.42
PF01216	383	Calsequestrin: Calsequestrin; InterPro: IPR001393	99.42
cd03069	104	PDI_b_ERp57 PDIb family, ERp57 subfamily, first re	99.41
PTZ00051	98	thioredoxin; Provisional	99.41
cd03066	102	PDI_b_Calsequestrin_middle PDIb family, Calsequest	99.4
PF13848	184	Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_	99.39
cd02981	97	PDI_b_family Protein Disulfide Isomerase (PDIb) fa	99.39
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	99.38
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	99.36
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	99.35
cd02947	93	TRX_family TRX family; composed of two groups: Gro	99.34
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	99.33
cd03068	107	PDI_b_ERp72 PDIb family, ERp72 subfamily, first re	99.33
PTZ00062	204	glutaredoxin; Provisional	99.32
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	99.32
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	99.32
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	99.3
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	99.29
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	99.26
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	99.25
cd02983	130	P5_C P5 family, C-terminal redox inactive TRX-like	99.24
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	99.23
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	99.22
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	99.22
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	99.21
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	99.2
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	99.19
cd03073	111	PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 s	99.18
cd03007	116	PDI_a_ERp29_N PDIa family, endoplasmic reticulum p	99.18
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	99.16
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	99.15
KOG0910	150	consensus Thioredoxin-like protein [Posttranslatio	99.12
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	99.11
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	99.1
KOG1731	606	consensus FAD-dependent sulfhydryl oxidase/quiesci	99.1
PRK09381	109	trxA thioredoxin; Provisional	99.08
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	99.06
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	99.04
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	99.03
PTZ00062	204	glutaredoxin; Provisional	99.01
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	99.01
PRK10996	139	thioredoxin 2; Provisional	99.0
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	98.99
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	98.98
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	98.98
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	98.98
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	98.97
TIGR00424	463	APS_reduc 5'-adenylylsulfate reductase, thioredoxi	98.91
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	98.91
PHA02125	75	thioredoxin-like protein	98.9
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	98.88
COG3118	304	Thioredoxin domain-containing protein [Posttransla	98.88
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	98.86
PRK11509	132	hydrogenase-1 operon protein HyaE; Provisional	98.84
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	98.84
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	98.83
PLN02309	457	5'-adenylylsulfate reductase	98.82
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	98.8
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.79
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	98.78
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	98.75
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	98.74
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	98.74
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	98.74
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	98.73
PHA02278	103	thioredoxin-like protein	98.73
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	98.71
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	98.7
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	98.69
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	98.68
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	98.67
PF13905	95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	98.67
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	98.65
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	98.65
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	98.64
KOG1731	606	consensus FAD-dependent sulfhydryl oxidase/quiesci	98.64
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	98.63
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	98.62
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	98.62
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	98.61
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	98.59
TIGR00385	173	dsbE periplasmic protein thiol:disulfide oxidoredu	98.57
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	98.56
cd03008	146	TryX_like_RdCVF Tryparedoxin (TryX)-like family, R	98.55
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	98.55
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	98.55
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	98.55
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	98.53
KOG0914	265	consensus Thioredoxin-like protein [Posttranslatio	98.51
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	98.51
cd02986	114	DLP Dim1 family, Dim1-like protein (DLP) subfamily	98.49
KOG0913	248	consensus Thiol-disulfide isomerase and thioredoxi	98.49
cd02960	130	AGR Anterior Gradient (AGR) family; members of thi	98.47
cd02947	93	TRX_family TRX family; composed of two groups: Gro	98.46
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.46
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	98.46
PF02114	265	Phosducin: Phosducin; InterPro: IPR024253 The oute	98.42
PTZ00051	98	thioredoxin; Provisional	98.42
KOG0907	106	consensus Thioredoxin [Posttranslational modificat	98.41
cd03070	91	PDI_b_ERp44 PDIb family, ERp44 subfamily, first re	98.37
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	98.37
PF13899	82	Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_	98.35
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	98.35
PRK13728	181	conjugal transfer protein TrbB; Provisional	98.35
cd02967	114	mauD Methylamine utilization (mau) D family; mauD	98.33
COG4232	569	Thiol:disulfide interchange protein [Posttranslati	98.33
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	98.28
smart00594	122	UAS UAS domain.	98.25
cd03067	112	PDI_b_PDIR_N PDIb family, PDIR subfamily, N-termin	98.25
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.24
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	98.24
PLN02399	236	phospholipid hydroperoxide glutathione peroxidase	98.16
PF07912	126	ERp29_N: ERp29, N-terminal domain; InterPro: IPR01	98.16
cd03012	126	TlpA_like_DipZ_like TlpA-like family, DipZ-like su	98.16
PRK11509	132	hydrogenase-1 operon protein HyaE; Provisional	98.13
cd02983	130	P5_C P5 family, C-terminal redox inactive TRX-like	98.13
cd02988	192	Phd_like_VIAF Phosducin (Phd)-like family, Viral i	98.11
TIGR02200	77	GlrX_actino Glutaredoxin-like protein. This family	98.05
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.04
TIGR02661	189	MauD methylamine dehydrogenase accessory protein M	98.03
PTZ00056	199	glutathione peroxidase; Provisional	98.02
PF08534	146	Redoxin: Redoxin; InterPro: IPR013740 This redoxin	98.02
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	98.02
PLN02412	167	probable glutathione peroxidase	98.0
TIGR02196	74	GlrX_YruB Glutaredoxin-like protein, YruB-family.	97.99
KOG2603	331	consensus Oligosaccharyltransferase, gamma subunit	97.97
COG0526	127	TrxA Thiol-disulfide isomerase and thioredoxins [P	97.96
cd01659	69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	97.96
TIGR02540	153	gpx7 putative glutathione peroxidase Gpx7. This mo	97.95
cd02969	171	PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot	97.91
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	97.87
KOG0908	288	consensus Thioredoxin-like protein [Posttranslatio	97.82
PF13192	76	Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY	97.81
PF13728	215	TraF: F plasmid transfer operon protein	97.75
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	97.74
cd03072	111	PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second	97.74
cd02981	97	PDI_b_family Protein Disulfide Isomerase (PDIb) fa	97.71
PF06110	119	DUF953: Eukaryotic protein of unknown function (DU	97.68
cd03074	120	PDI_b'_Calsequestrin_C Protein Disulfide Isomerase	97.66
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	97.63
cd03067	112	PDI_b_PDIR_N PDIb family, PDIR subfamily, N-termin	97.63
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	97.62
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	97.61
PTZ00256	183	glutathione peroxidase; Provisional	97.59
PRK11200	85	grxA glutaredoxin 1; Provisional	97.57
cd00340	152	GSH_Peroxidase Glutathione (GSH) peroxidase family	97.56
TIGR01626	184	ytfJ_HI0045 conserved hypothetical protein YtfJ-fa	97.53
KOG1672	211	consensus ATP binding protein [Posttranslational m	97.5
PRK13703	248	conjugal pilus assembly protein TraF; Provisional	97.47
TIGR02739	256	TraF type-F conjugative transfer system pilin asse	97.46
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	97.45
TIGR02180	84	GRX_euk Glutaredoxin. This model represents eukary	97.42
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	97.41
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	97.41
cd03073	111	PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 s	97.39
PF00578	124	AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per	97.35
KOG2501	157	consensus Thioredoxin, nucleoredoxin and related p	97.33
PF07912	126	ERp29_N: ERp29, N-terminal domain; InterPro: IPR01	97.29
KOG0914	265	consensus Thioredoxin-like protein [Posttranslatio	97.29
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	97.28
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	97.28
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	97.28
cd02991	116	UAS_ETEA UAS family, ETEA subfamily; composed of p	97.26
KOG0911	227	consensus Glutaredoxin-related protein [Posttransl	97.23
KOG3170	240	consensus Conserved phosducin-like protein [Signal	97.2
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	97.18
KOG3425	128	consensus Uncharacterized conserved protein [Funct	97.18
cd03017	140	PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit	97.18
smart00594	122	UAS UAS domain.	97.13
TIGR00385	173	dsbE periplasmic protein thiol:disulfide oxidoredu	97.13
COG2143	182	Thioredoxin-related protein [Posttranslational mod	97.12
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	97.12
cd02976	73	NrdH NrdH-redoxin (NrdH) family; NrdH is a small m	97.09
PF14595	129	Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.	97.07
PF13905	95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	97.0
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	97.0
TIGR02183	86	GRXA Glutaredoxin, GrxA family. This model include	96.98
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	96.96
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	96.94
cd02968	142	SCO SCO (an acronym for Synthesis of Cytochrome c	96.89
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	96.86
PRK10606	183	btuE putative glutathione peroxidase; Provisional	96.75
KOG0911	227	consensus Glutaredoxin-related protein [Posttransl	96.75
PF00462	60	Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl	96.72
cd02970	149	PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot	96.66
PRK09437	154	bcp thioredoxin-dependent thiol peroxidase; Review	96.65
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	96.64
PRK10329	81	glutaredoxin-like protein; Provisional	96.61
cd03014	143	PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical	96.61
cd03018	149	PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik	96.55
PRK13728	181	conjugal transfer protein TrbB; Provisional	96.5
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	96.47
KOG2603	331	consensus Oligosaccharyltransferase, gamma subunit	96.44
PRK00522	167	tpx lipid hydroperoxide peroxidase; Provisional	96.4
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	96.4
TIGR02190	79	GlrX-dom Glutaredoxin-family domain. This C-termin	96.36
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	96.35
PHA02125	75	thioredoxin-like protein	96.33
cd02066	72	GRX_family Glutaredoxin (GRX) family; composed of	96.31
PF02114	265	Phosducin: Phosducin; InterPro: IPR024253 The oute	96.3
cd03015	173	PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-	96.29
cd02971	140	PRX_family Peroxiredoxin (PRX) family; composed of	96.27
cd03419	82	GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h	96.26
PF13728	215	TraF: F plasmid transfer operon protein	96.26
PF05768	81	DUF836: Glutaredoxin-like domain (DUF836); InterPr	96.24
TIGR02194	72	GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red	96.22
KOG3171	273	consensus Conserved phosducin-like protein [Signal	96.13
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	96.11
TIGR03137	187	AhpC peroxiredoxin. This gene contains two invaria	96.09
KOG3414	142	consensus Component of the U4/U6.U5 snRNP/mitosis	96.09
cd03027	73	GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg	96.05
cd03418	75	GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b	96.02
PF07449	107	HyaE: Hydrogenase-1 expression protein HyaE; Inter	96.02
TIGR02181	79	GRX_bact Glutaredoxin, GrxC family. This family of	96.0
TIGR02739	256	TraF type-F conjugative transfer system pilin asse	95.98
cd03071	116	PDI_b'_NRX PDIb' family, NRX subgroup, redox inact	95.93
cd03029	72	GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb	95.89
PF03190	163	Thioredox_DsbH: Protein of unknown function, DUF25	95.8
cd03069	104	PDI_b_ERp57 PDIb family, ERp57 subfamily, first re	95.79
cd02967	114	mauD Methylamine utilization (mau) D family; mauD	95.79
PRK13703	248	conjugal pilus assembly protein TraF; Provisional	95.77
TIGR02189	99	GlrX-like_plant Glutaredoxin-like family. This fam	95.76
cd02969	171	PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot	95.69
PHA03050	108	glutaredoxin; Provisional	95.64
PF11009	105	DUF2847: Protein of unknown function (DUF2847); In	95.64
KOG1672	211	consensus ATP binding protein [Posttranslational m	95.56
TIGR02661	189	MauD methylamine dehydrogenase accessory protein M	95.54
cd03008	146	TryX_like_RdCVF Tryparedoxin (TryX)-like family, R	95.48
PLN02399	236	phospholipid hydroperoxide glutathione peroxidase	95.47
cd03066	102	PDI_b_Calsequestrin_middle PDIb family, Calsequest	95.45
cd03012	126	TlpA_like_DipZ_like TlpA-like family, DipZ-like su	95.35
PRK10877	232	protein disulfide isomerase II DsbC; Provisional	95.25
PTZ00056	199	glutathione peroxidase; Provisional	95.14
KOG0913	248	consensus Thiol-disulfide isomerase and thioredoxi	95.14
PRK10638	83	glutaredoxin 3; Provisional	94.94
COG0695	80	GrxC Glutaredoxin and related proteins [Posttransl	94.9
cd03020	197	DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil	94.86
PF08534	146	Redoxin: Redoxin; InterPro: IPR013740 This redoxin	94.82
PRK10382	187	alkyl hydroperoxide reductase subunit C; Provision	94.78
TIGR00365	97	monothiol glutaredoxin, Grx4 family. The gene for	94.77
PF11009	105	DUF2847: Protein of unknown function (DUF2847); In	94.64
PF13192	76	Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY	94.61
cd02991	116	UAS_ETEA UAS family, ETEA subfamily; composed of p	94.6
PRK15000	200	peroxidase; Provisional	94.43
cd03074	120	PDI_b'_Calsequestrin_C Protein Disulfide Isomerase	94.42
cd03028	90	GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte	94.39
cd02960	130	AGR Anterior Gradient (AGR) family; members of thi	94.39
PLN02412	167	probable glutathione peroxidase	94.38
PF13899	82	Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_	94.37
COG4232	569	Thiol:disulfide interchange protein [Posttranslati	94.13
cd02972	98	DsbA_family DsbA family; consists of DsbA and DsbA	93.96
PRK13190	202	putative peroxiredoxin; Provisional	93.71
PF02966	133	DIM1: Mitosis protein DIM1; InterPro: IPR004123 Th	93.6
cd01659	69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	93.55
cd03023	154	DsbA_Com1_like DsbA family, Com1-like subfamily; c	93.35
PRK10824	115	glutaredoxin-4; Provisional	93.3
cd03016	203	PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub	93.23
PRK13191	215	putative peroxiredoxin; Provisional	93.12
PRK13599	215	putative peroxiredoxin; Provisional	93.1
PTZ00137	261	2-Cys peroxiredoxin; Provisional	93.09
TIGR02540	153	gpx7 putative glutathione peroxidase Gpx7. This mo	92.86
PTZ00253	199	tryparedoxin peroxidase; Provisional	92.51
PRK13189	222	peroxiredoxin; Provisional	92.39
KOG3414	142	consensus Component of the U4/U6.U5 snRNP/mitosis	92.07
PF00578	124	AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per	92.04
cd03068	107	PDI_b_ERp72 PDIb family, ERp72 subfamily, first re	92.0
PF13462	162	Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV	91.81
COG0526	127	TrxA Thiol-disulfide isomerase and thioredoxins [P	91.76
TIGR02196	74	GlrX_YruB Glutaredoxin-like protein, YruB-family.	91.72
PF02966	133	DIM1: Mitosis protein DIM1; InterPro: IPR004123 Th	91.5
cd03015	173	PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-	91.41
PRK11657	251	dsbG disulfide isomerase/thiol-disulfide oxidase;	91.03
PTZ00256	183	glutathione peroxidase; Provisional	90.76
PRK12759	410	bifunctional gluaredoxin/ribonucleoside-diphosphat	90.73
COG2143	182	Thioredoxin-related protein [Posttranslational mod	90.69
cd00340	152	GSH_Peroxidase Glutathione (GSH) peroxidase family	90.32
cd03019	178	DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m	90.02
KOG1752	104	consensus Glutaredoxin and related proteins [Postt	89.7
KOG3170	240	consensus Conserved phosducin-like protein [Signal	89.25
cd02974	94	AhpF_NTD_N Alkyl hydroperoxide reductase F subunit	88.24
PRK11200	85	grxA glutaredoxin 1; Provisional	86.96
PF14595	129	Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.	86.49
cd02970	149	PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot	86.36
PF07449	107	HyaE: Hydrogenase-1 expression protein HyaE; Inter	86.21
cd03017	140	PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit	86.12
cd03014	143	PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical	86.05
KOG2640	319	consensus Thioredoxin [Function unknown]	85.27
PRK09437	154	bcp thioredoxin-dependent thiol peroxidase; Review	85.2
cd03031	147	GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d	84.82
TIGR01626	184	ytfJ_HI0045 conserved hypothetical protein YtfJ-fa	84.76
KOG2501	157	consensus Thioredoxin, nucleoredoxin and related p	84.69
PF00837	237	T4_deiodinase: Iodothyronine deiodinase; InterPro:	84.48
TIGR02180	84	GRX_euk Glutaredoxin. This model represents eukary	84.39
cd03036	111	ArsC_like Arsenate Reductase (ArsC) family, unknow	84.28
cd02977	105	ArsC_family Arsenate Reductase (ArsC) family; comp	84.14
KOG3425	128	consensus Uncharacterized conserved protein [Funct	83.79
PRK10954	207	periplasmic protein disulfide isomerase I; Provisi	83.71
TIGR02200	77	GlrX_actino Glutaredoxin-like protein. This family	83.54
PRK00522	167	tpx lipid hydroperoxide peroxidase; Provisional	83.35
PF05768	81	DUF836: Glutaredoxin-like domain (DUF836); InterPr	83.24
PRK10382	187	alkyl hydroperoxide reductase subunit C; Provision	83.19
PRK10606	183	btuE putative glutathione peroxidase; Provisional	83.11
TIGR03137	187	AhpC peroxiredoxin. This gene contains two invaria	82.02
cd03018	149	PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik	80.91

>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1e-63  Score=467.76  Aligned_cols=371  Identities=44%  Similarity=0.717  Sum_probs=340.6

Q ss_pred             CCCcceeeeccCcc-cccCCCcccCccCCCCCChhHHHHHHHHhhCCCceeeCCHHHHHHHhhcCCeEEEEEecCCCcch
Q 013976            1 MSWRTSTTFRASRR-FTSSSTASIKLIMAAAPSKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNSLVGSE   79 (432)
Q Consensus         1 ~~~Ptl~~f~~g~~-~~~~~~~~~~~~Y~G~~~~~~i~~~l~~~~~~~~~~i~~~~~l~~~~~~~~~~vv~f~~~~~~~~   79 (432)
                      .|||||++||+|+. ..          |.|+|++++|+.||+++.+|+++.|++.++++.++...+++|||||.+..+..
T Consensus        98 ~gyPTlkiFrnG~~~~~----------Y~G~r~adgIv~wl~kq~gPa~~~l~~~~~a~~~l~~~~~~vig~F~d~~~~~  167 (493)
T KOG0190|consen   98 RGYPTLKIFRNGRSAQD----------YNGPREADGIVKWLKKQSGPASKTLKTVDEAEEFLSKKDVVVIGFFKDLESLA  167 (493)
T ss_pred             CCCCeEEEEecCCccee----------ccCcccHHHHHHHHHhccCCCceecccHHHHHhhccCCceEEEEEecccccch
Confidence            48999999999986 44          99999999999999999999999999999999999999999999999888777


Q ss_pred             HHHHHHHh-ccCCCceEEEeCcHHHHhHcCCCCCCCCCeEEEEecCCCceecccCCCCCHHHHHHHHHhcCCCceeecCC
Q 013976           80 SEVLADAS-RLEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTR  158 (432)
Q Consensus        80 ~~~f~~~a-~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~i~l~~~~~~~~~~y~~g~~~~~~l~~fi~~~~~p~v~~l~~  158 (432)
                       ..|..+| ++++++.|+++++.++++.+++..++ .+.+++++..|+....| .|.++.+.|..||+.+++|+|.++|.
T Consensus       168 -~~~~~~a~~l~~d~~F~~ts~~~~~~~~~~~~~~-~~~i~l~kk~d~~~~~~-~~~~~~~~l~~Fi~~~~~plv~~ft~  244 (493)
T KOG0190|consen  168 -ESFFDAASKLRDDYKFAHTSDSDVAKKLELNTEG-TFPIVLFKKFDELLVKY-DGSFTPELLKKFIQENSLPLVTEFTV  244 (493)
T ss_pred             -HHHHHHHHhccccceeeccCcHhHHhhccCCCCC-cceEEeccccccchhhc-ccccCHHHHHHHHHHhcccccceecc
Confidence             6666655 99999999999999999999997633 45599999999899999 99999999999999999999999999


Q ss_pred             CchhhhccCCCcceEEEEEeC--cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCC
Q 013976          159 ENAPSVFESPIKNQLLLFAVS--NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGND  236 (432)
Q Consensus       159 ~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~  236 (432)
                      ++...++++..+..++||...  ...+.+++.+.++|++|+++++|+.+|...   +.+.++.||+.....|..++....
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~vAk~f~~~l~Fi~~d~e~---~~~~~~~~Gl~~~~~~~~~v~~~~  321 (493)
T KOG0190|consen  245 ANNAKIYSSFVKLGLDFFVFFKCNRFEELRKKFEEVAKKFKGKLRFILIDPES---FARVLEFFGLEEEQLPIRAVILNE  321 (493)
T ss_pred             cccceeeccccccceeEEeccccccHHHHHHHHHHHHHhcccceEEEEEChHH---hhHHHHhcCcccccCCeeEEeecc
Confidence            999999888777777777655  488999999999999999999999997776   445899999997777755566666


Q ss_pred             CCceecCCCC-CCHHHHHHHHHHHhcCCcCccccCCCCCCCCC-CceEEEecccchhhhhcCCCcEEEEEeCCCChhhhh
Q 013976          237 DAKKHILDGE-LTLDKIKTFGEDFLEGKLKPFFKSDPIPETND-GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQA  314 (432)
Q Consensus       237 ~~~~y~~~~~-~~~~~i~~fi~~~~~g~l~~~~~se~~p~~~~-~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~  314 (432)
                      ++.+|.+.++ .+.++|..|+.+++.|+++|+++|+|+|++++ ++|+.|+++||++.+.+.+++|||.||||||+||++
T Consensus       322 ~~~Ky~~~~e~~~~~~ie~f~~~~l~Gk~~p~~kSqpiPe~~~~~pVkvvVgknfd~iv~de~KdVLvEfyAPWCgHCk~  401 (493)
T KOG0190|consen  322 DGSKYPLEEEELDQENIESFVKDFLDGKVKPHLKSQPIPEDNDRSPVKVVVGKNFDDIVLDEGKDVLVEFYAPWCGHCKA  401 (493)
T ss_pred             ccccccCccccccHHHHHHHHHHHhcCccccccccCCCCcccccCCeEEEeecCHHHHhhccccceEEEEcCcccchhhh
Confidence            7788998765 88899999999999999999999999999997 889999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhcCCCCEEEEEEeCCCcccccCCCCCCceEEEEeCCCcccCceeccCCCCHHHHHHHHHhcCC
Q 013976          315 FEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNAS  388 (432)
Q Consensus       315 ~~~~~~~la~~~~~~~~~~~~~id~~~~~~~~~~i~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  388 (432)
                      +.|+|++||..|++.+++.+++||++.|+.+...++++|||.+||.|.+. +|+.|.|.++.+.+..||.++++
T Consensus       402 laP~~eeLAe~~~~~~~vviAKmDaTaNd~~~~~~~~fPTI~~~pag~k~-~pv~y~g~R~le~~~~fi~~~a~  474 (493)
T KOG0190|consen  402 LAPIYEELAEKYKDDENVVIAKMDATANDVPSLKVDGFPTILFFPAGHKS-NPVIYNGDRTLEDLKKFIKKSAT  474 (493)
T ss_pred             hhhHHHHHHHHhcCCCCcEEEEeccccccCccccccccceEEEecCCCCC-CCcccCCCcchHHHHhhhccCCC
Confidence            99999999999999889999999999999999999999999999999987 89999999999999999999998

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=100.00  E-value=4.1e-48  Score=383.19  Aligned_cols=374  Identities=37%  Similarity=0.629  Sum_probs=326.7

Q ss_pred             CCCcceeeeccCcc-cccCCCcccCccCCCCCChhHHHHHHHHhhCCCceeeCCHHHHHHHhhcCCeEEEEEecCCCcch
Q 013976            1 MSWRTSTTFRASRR-FTSSSTASIKLIMAAAPSKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNSLVGSE   79 (432)
Q Consensus         1 ~~~Ptl~~f~~g~~-~~~~~~~~~~~~Y~G~~~~~~i~~~l~~~~~~~~~~i~~~~~l~~~~~~~~~~vv~f~~~~~~~~   79 (432)
                      ++|||+++|++|+. ..         .|.|.++.+.|.+|+.+.+.+++..+++.++++.++..+++.+|+|+.+.+...
T Consensus        74 ~~~Pt~~~~~~g~~~~~---------~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~vi~~~~~~~~~~  144 (462)
T TIGR01130        74 SGYPTLKIFRNGEDSVS---------DYNGPRDADGIVKYMKKQSGPAVKEIETVADLEAFLADDDVVVIGFFKDLDSEL  144 (462)
T ss_pred             ccccEEEEEeCCcccee---------EecCCCCHHHHHHHHHHhcCCCceeecCHHHHHHHHhcCCcEEEEEECCCCcHH
Confidence            47999999999987 22         399999999999999999999999999999999999999999999999878889


Q ss_pred             HHHHHHHh-ccCCCce-EEEeCcHHHHhHcCCCCCCCCCeEEEEecCCCce--ecccCCCC--CHHHHHHHHHhcCCCce
Q 013976           80 SEVLADAS-RLEDDVN-FYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKI--SYFADGKF--DKSTIADFVFSNKLPLV  153 (432)
Q Consensus        80 ~~~f~~~a-~~~~~~~-F~~~~~~~~~~~~~~~~~~~~p~i~l~~~~~~~~--~~y~~g~~--~~~~l~~fi~~~~~p~v  153 (432)
                      +..|.++| .....+. |+.+.+..++..++...    +.+++|+..++..  +.| .|+.  +.++|..||..++.|++
T Consensus       145 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~fi~~~~~p~v  219 (462)
T TIGR01130       145 NDTFLSVAEKLRDVYFFFAHSSDVAAFAKLGAFP----DSVVLFKPKDEDEKFSKV-DGEMDTDVSDLEKFIRAESLPLV  219 (462)
T ss_pred             HHHHHHHHHHhhhccceEEecCCHHHHhhcCCCC----CcEEEecccccccccccc-cCcccCCHHHHHHHHHHcCCCce
Confidence            99999999 5556665 55566778888888764    7788888765443  356 6654  56899999999999999


Q ss_pred             eecCCCchhhhccCCCcceEEEEEeC---cchhhhHHHHHHHHHhccC-ceEEEEEecCCcccccchhhhhCCCCCCCcE
Q 013976          154 TIFTRENAPSVFESPIKNQLLLFAVS---NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNEDVGKPVSEYFGITGEAPKV  229 (432)
Q Consensus       154 ~~l~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~a~~~~~-~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~  229 (432)
                      .+++.+++..++..+ +.+++|+...   ..++.+...++++|+++++ .+.|+++|+..   .+.+++.+|++....|+
T Consensus       220 ~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~f~~~d~~~---~~~~~~~~~~~~~~~P~  295 (462)
T TIGR01130       220 GEFTQETAAKYFESG-PLVVLYYNVDESLDPFEELRNRFLEAAKKFRGKFVNFAVADEED---FGRELEYFGLKAEKFPA  295 (462)
T ss_pred             EeeCCcchhhHhCCC-CceeEEEEecCCchHHHHHHHHHHHHHHHCCCCeEEEEEecHHH---hHHHHHHcCCCccCCce
Confidence            999999999988776 5555554433   3468999999999999997 89999999987   55899999999767899


Q ss_pred             EEEEeCCCCceecCCC-CCCHHHHHHHHHHHhcCCcCccccCCCCCCCCCCceEEEecccchhhhhcCCCcEEEEEeCCC
Q 013976          230 LAYTGNDDAKKHILDG-ELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPW  308 (432)
Q Consensus       230 i~i~~~~~~~~y~~~~-~~~~~~i~~fi~~~~~g~l~~~~~se~~p~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~  308 (432)
                      +++++..+..+|.+.+ .++.++|.+|++++++|++++.++|+++|+..++.+..|++.+|++.+.+.++++||.||++|
T Consensus       296 ~vi~~~~~~~~y~~~~~~~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l~~~~f~~~v~~~~~~vlv~f~a~w  375 (462)
T TIGR01130       296 VAIQDLEGNKKYPMDQEEFSSENLEAFVKDFLDGKLKPYLKSEPIPEDDEGPVKVLVGKNFDEIVLDETKDVLVEFYAPW  375 (462)
T ss_pred             EEEEeCCcccccCCCcCCCCHHHHHHHHHHHhcCCCCeeeccCCCCccCCCccEEeeCcCHHHHhccCCCeEEEEEECCC
Confidence            9999776546788876 799999999999999999999999999998888899999999999999888999999999999


Q ss_pred             ChhhhhhHHHHHHHHHHhcCC-CCEEEEEEeCCCcccccCCCCCCceEEEEeCCCcccCceeccCCCCHHHHHHHHHhcC
Q 013976          309 CGHCQAFEPTYNKLAKHLRGV-DSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA  387 (432)
Q Consensus       309 c~~c~~~~~~~~~la~~~~~~-~~~~~~~id~~~~~~~~~~i~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  387 (432)
                      |++|+.+.|.|++++..+++. ..+.|+.+||+.++...+.+.++|++++|++|.+. +++.|.|..+.+.|.+||.+++
T Consensus       376 C~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~~~~~~i~~~Pt~~~~~~~~~~-~~~~~~g~~~~~~l~~~l~~~~  454 (462)
T TIGR01130       376 CGHCKNLAPIYEELAEKYKDAESDVVIAKMDATANDVPPFEVEGFPTIKFVPAGKKS-EPVPYDGDRTLEDFSKFIAKHA  454 (462)
T ss_pred             CHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCccCCCCccccCEEEEEeCCCCc-CceEecCcCCHHHHHHHHHhcC
Confidence            999999999999999999873 37999999999998866999999999999999876 6789999999999999999999


Q ss_pred             CCCCcc
Q 013976          388 SIPFKI  393 (432)
Q Consensus       388 ~~~~~~  393 (432)
                      +.+.+.
T Consensus       455 ~~~~~~  460 (462)
T TIGR01130       455 TFPLEG  460 (462)
T ss_pred             CCCCcC
Confidence            887764

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>PTZ00102 disulphide isomerase; Provisional

Probab=100.00  E-value=4.7e-46  Score=369.16  Aligned_cols=356  Identities=30%  Similarity=0.520  Sum_probs=307.8

Q ss_pred             CCCcceeeeccCcccccCCCcccCccCCCCCChhHHHHHHHHhhCCCceeeCCHHHHHHHhhcCCeEEEEEecCCCcchH
Q 013976            1 MSWRTSTTFRASRRFTSSSTASIKLIMAAAPSKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNSLVGSES   80 (432)
Q Consensus         1 ~~~Ptl~~f~~g~~~~~~~~~~~~~~Y~G~~~~~~i~~~l~~~~~~~~~~i~~~~~l~~~~~~~~~~vv~f~~~~~~~~~   80 (432)
                      .||||+++|++|....          |.|.++++.|++||.+.++|++..|++.+++..+.....+++++++.+.+...+
T Consensus       105 ~~~Pt~~~~~~g~~~~----------y~g~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (477)
T PTZ00102        105 RGYPTIKFFNKGNPVN----------YSGGRTADGIVSWIKKLTGPAVTEVESASEIKLIAKKIFVAFYGEYTSKDSELY  174 (477)
T ss_pred             CcccEEEEEECCceEE----------ecCCCCHHHHHHHHHHhhCCCceeecCHHHHHHhhccCcEEEEEEeccCCcHHH
Confidence            4899999999997666          999999999999999999999999999999988878888899999998888899


Q ss_pred             HHHHHHh-ccCCCceEEEeCcHHHHhHcCCCCCCCCCeEEEEecCCCceecccCCCCCHHHHHHHHHhcCCCceeecCCC
Q 013976           81 EVLADAS-RLEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRE  159 (432)
Q Consensus        81 ~~f~~~a-~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~i~l~~~~~~~~~~y~~g~~~~~~l~~fi~~~~~p~v~~l~~~  159 (432)
                      +.|.++| .+++.+.|+...+.        .    .+.+++|+..+.....| . ..+.++|..||..++.|++.+++.+
T Consensus       175 ~~f~~~a~~~~~~~~F~~~~~~--------~----~~~~~~~~~~~~~~~~~-~-~~~~~~l~~fI~~~~~P~~~~~~~~  240 (477)
T PTZ00102        175 KKFEEVADKHREHAKFFVKKHE--------G----KNKIYVLHKDEEGVELF-M-GKTKEELEEFVSTESFPLFAEINAE  240 (477)
T ss_pred             HHHHHHHHhccccceEEEEcCC--------C----CCcEEEEecCCCCcccC-C-CCCHHHHHHHHHHcCCCceeecCcc
Confidence            9999988 67788899876542        1    26788898755444444 4 4588999999999999999999999


Q ss_pred             chhhhccCCCcceEEEEEeCcchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCc
Q 013976          160 NAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAK  239 (432)
Q Consensus       160 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~  239 (432)
                      ++..++..+.. +++++....+.+.+.+.++++|+++++++.|+++|+....  .++++.+|+...  |++++....  .
T Consensus       241 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~f~~vd~~~~~--~~~~~~~gi~~~--P~~~i~~~~--~  313 (477)
T PTZ00102        241 NYRRYISSGKD-LVWFCGTTEDYDKYKSVVRKVARKLREKYAFVWLDTEQFG--SHAKEHLLIEEF--PGLAYQSPA--G  313 (477)
T ss_pred             chHHHhcCCcc-EEEEecCHHHHHHHHHHHHHHHHhccCceEEEEEechhcc--hhHHHhcCcccC--ceEEEEcCC--c
Confidence            99998887753 3333333366778899999999999999999999999843  247899999886  999887643  2


Q ss_pred             eecCCCC----CCHHHHHHHHHHHhcCCcCccccCCCCCCCCCCceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhh
Q 013976          240 KHILDGE----LTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAF  315 (432)
Q Consensus       240 ~y~~~~~----~~~~~i~~fi~~~~~g~l~~~~~se~~p~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~  315 (432)
                      +|.+.+.    ++.++|.+|++++++|+++++++|+++|+..++.|..|++++|++.+.+.+++++|.|||+||++|+.+
T Consensus       314 ~y~~~~~~~~~~~~~~l~~Fv~~~~~gk~~~~~~se~~p~~~~~~v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~  393 (477)
T PTZ00102        314 RYLLPPAKESFDSVEALIEFFKDVEAGKVEKSIKSEPIPEEQDGPVKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNL  393 (477)
T ss_pred             ccCCCccccccCCHHHHHHHHHHHhCCCCCcccccCCCCCCCCCCeEEecccchHHHHhcCCCCEEEEEECCCCHHHHHH
Confidence            5655543    789999999999999999999999999988888999999999999988888999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCcccCceeccCCCCHHHHHHHHHhcCCC
Q 013976          316 EPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASI  389 (432)
Q Consensus       316 ~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~  389 (432)
                      .|.|.++|..+++...+.++.+|++.++.  ..++++++|++++|++|.+  .++.|.|.++.+.|.+||+++++.
T Consensus       394 ~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~Pt~~~~~~~~~--~~~~~~G~~~~~~l~~~i~~~~~~  467 (477)
T PTZ00102        394 EPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFPTILFVKAGER--TPIPYEGERTVEGFKEFVNKHATN  467 (477)
T ss_pred             HHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccCeEEEEECCCc--ceeEecCcCCHHHHHHHHHHcCCC
Confidence            99999999999876679999999999887  5799999999999999876  466899999999999999999976

>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=99.95  E-value=2.2e-27  Score=204.31  Aligned_cols=254  Identities=20%  Similarity=0.245  Sum_probs=202.1

Q ss_pred             CCCcceeeeccCcccccCCCcccCccCCCCCChhHHHHHHHHhhCCCceeeCCHHHHHHHhhcCCeEEEEEecCCCcchH
Q 013976            1 MSWRTSTTFRASRRFTSSSTASIKLIMAAAPSKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNSLVGSES   80 (432)
Q Consensus         1 ~~~Ptl~~f~~g~~~~~~~~~~~~~~Y~G~~~~~~i~~~l~~~~~~~~~~i~~~~~l~~~~~~~~~~vv~f~~~~~~~~~   80 (432)
                      |.||||++||+|....        .+|+|.|+++++.+||++++..++.++.+.++++.+..-.+-.+||||.+.+++.+
T Consensus        71 ~KyPTlKvfrnG~~~~--------rEYRg~RsVeaL~efi~kq~s~~i~Ef~sl~~l~n~~~p~K~~vIgyF~~kdspey  142 (375)
T KOG0912|consen   71 NKYPTLKVFRNGEMMK--------REYRGQRSVEALIEFIEKQLSDPINEFESLDQLQNLDIPSKRTVIGYFPSKDSPEY  142 (375)
T ss_pred             ccCceeeeeeccchhh--------hhhccchhHHHHHHHHHHHhccHHHHHHhHHHHHhhhccccceEEEEeccCCCchH
Confidence            6899999999998776        68999999999999999999999999999999999988778899999999999999


Q ss_pred             HHHHHHh-ccCCCceEEEeCcHHHHhHcCCCCCCCCCeEEEEecCC-CceecccCCCC-CHHHHHHHHHhcCCCceeecC
Q 013976           81 EVLADAS-RLEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKET-EKISYFADGKF-DKSTIADFVFSNKLPLVTIFT  157 (432)
Q Consensus        81 ~~f~~~a-~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~i~l~~~~~-~~~~~y~~g~~-~~~~l~~fi~~~~~p~v~~l~  157 (432)
                      +.|+.+| -+++++.|.+..+.....+ ...   ..+ +.++++.- +..+.| .|++ +.+.|..||...+.|+|.++|
T Consensus       143 ~~~~kva~~lr~dc~f~V~~gD~~~~~-~~~---~~~-~~~f~pd~~~~~~~f-~G~~~nf~el~~Wi~dKcvpLVREiT  216 (375)
T KOG0912|consen  143 DNLRKVASLLRDDCVFLVGFGDLLKPH-EPP---GKN-ILVFDPDHSEPNHEF-LGSMTNFDELKQWIQDKCVPLVREIT  216 (375)
T ss_pred             HHHHHHHHHHhhccEEEeeccccccCC-CCC---CCc-eEEeCCCcCCcCccc-ccccccHHHHHHHHHhcchhhhhhhh
Confidence            9999999 6899999999875433221 111   112 56666533 333478 8887 589999999999999999999


Q ss_pred             CCchhhhccCCCcceEEEEEeCcchhhhHHHHHHHHHhccC---ceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEe
Q 013976          158 RENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKG---KLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTG  234 (432)
Q Consensus       158 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~~~~---~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~  234 (432)
                      -+|.+.+...|.|.+|+|..+. +......--..+++++.+   .|+|...|+..   .++.+.++|-+..++|.|+|-.
T Consensus       217 FeN~EELtEEGlPflILf~~kd-D~~s~k~F~~aI~ReL~~e~~~in~l~ADG~~---f~hpL~HlgKs~~DLPviaIDs  292 (375)
T KOG0912|consen  217 FENAEELTEEGLPFLILFRKKD-DKESEKIFKNAIARELDDETLAINFLTADGKV---FKHPLRHLGKSPDDLPVIAIDS  292 (375)
T ss_pred             hccHHHHhhcCCceEEEEecCC-cccHHHHHHHHHHHHhhhhhhccceeecCcce---ecchHHHhCCCcccCcEEEeec
Confidence            9999999999998888877655 222222222335555543   49999999998   4577999999999999999975


Q ss_pred             CCCCceecC---CCCCCHHHHHHHHHHHhcCCcCccccCCCCC
Q 013976          235 NDDAKKHIL---DGELTLDKIKTFGEDFLEGKLKPFFKSDPIP  274 (432)
Q Consensus       235 ~~~~~~y~~---~~~~~~~~i~~fi~~~~~g~l~~~~~se~~p  274 (432)
                      ...  .|.+   +.-..+..|.+|+.+..+|++.+.+...+-|
T Consensus       293 F~H--mylfp~f~di~~pGkLkqFv~DL~sgklHrefH~~~d~  333 (375)
T KOG0912|consen  293 FRH--MYLFPDFNDINIPGKLKQFVADLHSGKLHREFHEGPDP  333 (375)
T ss_pred             cce--eeecCchhhhcCccHHHHHHHHHhCchhhHHhhcCCCC
Confidence            543  4444   2345678999999999999999888776555

>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []

Probab=99.91  E-value=5.7e-22  Score=174.84  Aligned_cols=248  Identities=17%  Similarity=0.244  Sum_probs=186.3

Q ss_pred             cceeeeccCcccccCCCcccCccCCCCCChhHHHHHHHHhhCCCceeeCCHHHHHHHhhc-CCeEEEEEecCCCcchHHH
Q 013976            4 RTSTTFRASRRFTSSSTASIKLIMAAAPSKDAIVTWIKKKIGPGIYNITTLDEAERVLTS-ETKVVLGYLNSLVGSESEV   82 (432)
Q Consensus         4 Ptl~~f~~g~~~~~~~~~~~~~~Y~G~~~~~~i~~~l~~~~~~~~~~i~~~~~l~~~~~~-~~~~vv~f~~~~~~~~~~~   82 (432)
                      ++|.+|++|..+.          |.|.++++-++.||...+..||..|++..+++.|-+. ..+-+||||.+.+++.+++
T Consensus       114 ~SiyVfkd~~~IE----------ydG~~saDtLVeFl~dl~edPVeiIn~~~e~~~Fe~ied~~klIGyFk~~~s~~yk~  183 (383)
T PF01216_consen  114 GSIYVFKDGEVIE----------YDGERSADTLVEFLLDLLEDPVEIINNKHELKAFERIEDDIKLIGYFKSEDSEHYKE  183 (383)
T ss_dssp             TEEEEEETTEEEE----------E-S--SHHHHHHHHHHHHSSSEEEE-SHHHHHHHHH--SS-EEEEE-SSTTSHHHHH
T ss_pred             CcEEEEECCcEEE----------ecCccCHHHHHHHHHHhcccchhhhcChhhhhhhhhcccceeEEEEeCCCCcHHHHH
Confidence            6899999999999          9999999999999999999999999999999999874 4789999999998999999


Q ss_pred             HHHHh-ccCCCceEEEeCcHHHHhHcCCCCCCCCCeEEEEecCCCceecccCCCCCHHHHHHHHHhcCCCceeecCCCch
Q 013976           83 LADAS-RLEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENA  161 (432)
Q Consensus        83 f~~~a-~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~i~l~~~~~~~~~~y~~g~~~~~~l~~fi~~~~~p~v~~l~~~~~  161 (432)
                      |.+|| .++..+.|+.+.+..+|++++++.    ..+-+|+++.+.+.+.+..+.+..+|..||..|..|..+.++++++
T Consensus       184 FeeAAe~F~p~IkFfAtfd~~vAk~L~lK~----nev~fyepF~~~pi~ip~~p~~e~e~~~fi~~h~rptlrkl~~~~m  259 (383)
T PF01216_consen  184 FEEAAEHFQPYIKFFATFDKKVAKKLGLKL----NEVDFYEPFMDEPITIPGKPYTEEELVEFIEEHKRPTLRKLRPEDM  259 (383)
T ss_dssp             HHHHHHHCTTTSEEEEE-SHHHHHHHT-ST----T-EEEE-TTSSSEEEESSSS--HHHHHHHHHHT-S-SEEE--GGGH
T ss_pred             HHHHHHhhcCceeEEEEecchhhhhcCccc----cceeeeccccCCCccCCCCCCCHHHHHHHHHHhchhHhhhCChhhh
Confidence            99999 788999999999999999999975    7899999998888887566778999999999999999999999997


Q ss_pred             hhhccCCC-cceEEEEEeC--cchhhhHHHHHHHHHhccC--ceEEEEEecCCccc-ccchhhhhCCCCCCCcEEEEEeC
Q 013976          162 PSVFESPI-KNQLLLFAVS--NDSEKLLPVFEEAAKSFKG--KLIFVYVQMDNEDV-GKPVSEYFGITGEAPKVLAYTGN  235 (432)
Q Consensus       162 ~~~~~~~~-~~~i~~~~~~--~~~~~~~~~~~~~a~~~~~--~i~f~~vd~~~~~~-~~~l~~~~~i~~~~~P~i~i~~~  235 (432)
                      ........ -.+|+.|+..  ++...+...++++|+...+  .+.++|+|.++... -+-+-+.|||.-. -|+|.+.+-
T Consensus       260 ~e~Wedd~~g~hIvaFaee~dpdG~efleilk~va~~nt~np~LsivwIDPD~fPllv~yWE~tF~Idl~-~PqIGvVnv  338 (383)
T PF01216_consen  260 FETWEDDIDGIHIVAFAEEEDPDGFEFLEILKQVARDNTDNPDLSIVWIDPDDFPLLVPYWEKTFGIDLS-RPQIGVVNV  338 (383)
T ss_dssp             HHHHHSSSSSEEEEEE--TTSHHHHHHHHHHHHHHHHCTT-TT--EEEE-GGG-HHHHHHHHHHHTT-TT-S-EEEEEET
T ss_pred             hhhhcccCCCceEEEEecCCCCchHHHHHHHHHHHHhcCcCCceeEEEECCCCCchhHHHHHhhcCcccc-CCceeEEec
Confidence            66544332 3467778877  6678899999999999875  59999999988420 0111277899876 499999987


Q ss_pred             CC--CceecCCC---CCCHHHHHHHHHHHhcCCcCc
Q 013976          236 DD--AKKHILDG---ELTLDKIKTFGEDFLEGKLKP  266 (432)
Q Consensus       236 ~~--~~~y~~~~---~~~~~~i~~fi~~~~~g~l~~  266 (432)
                      ..  +.++.|.+   ..+.+.+..||+++++|++..
T Consensus       339 tdadsvW~dm~d~~d~pt~~~LedWieDVlsg~i~~  374 (383)
T PF01216_consen  339 TDADSVWMDMDDDDDLPTAEELEDWIEDVLSGKINT  374 (383)
T ss_dssp             TTSEEEEC-STTTSS---HHHHHHHHHHHHCTCCTB
T ss_pred             cccccchhccCCcccCCcHHHHHHHHHHHhcCCCCC
Confidence            65  45667754   258999999999999999865

It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.

>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A

Probab=99.90  E-value=1.2e-22  Score=175.40  Aligned_cols=179  Identities=31%  Similarity=0.497  Sum_probs=156.5

Q ss_pred             ecCCCcchHHHHHHHh-ccCCCceEEEeCcHHHHhHcCCCCCCCCCeEEEEecCCCceecccCCC-CCHHHHHHHHHhcC
Q 013976           72 LNSLVGSESEVLADAS-RLEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFADGK-FDKSTIADFVFSNK  149 (432)
Q Consensus        72 ~~~~~~~~~~~f~~~a-~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~i~l~~~~~~~~~~y~~g~-~~~~~l~~fi~~~~  149 (432)
                      |++.++.+++.|.++| .+++++.|+++.++++++.+++..    |+|++||..++....| .|+ ++.++|.+||..++
T Consensus         1 F~~~~~~~~~~f~~~A~~~~~~~~F~~~~~~~~~~~~~~~~----p~i~~~k~~~~~~~~y-~~~~~~~~~l~~fI~~~~   75 (184)
T PF13848_consen    1 FPDKDSELFEIFEEAAEKLKGDYQFGVTFNEELAKKYGIKE----PTIVVYKKFDEKPVVY-DGDKFTPEELKKFIKKNS   75 (184)
T ss_dssp             ESTTTSHHHHHHHHHHHHHTTTSEEEEEE-HHHHHHCTCSS----SEEEEEECTTTSEEEE-SSSTTSHHHHHHHHHHHS
T ss_pred             CCCcccHHHHHHHHHHHhCcCCcEEEEEcHHHHHHHhCCCC----CcEEEeccCCCCceec-ccccCCHHHHHHHHHHhc
Confidence            5677788999999999 788899999999999999999986    9999999988888999 887 89999999999999


Q ss_pred             CCceeecCCCchhhhccCCCcceEEEEEeC--cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCC
Q 013976          150 LPLVTIFTRENAPSVFESPIKNQLLLFAVS--NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAP  227 (432)
Q Consensus       150 ~p~v~~l~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~  227 (432)
                      .|+|.++|.+++..++..+.+.+++++...  ...+.+...++++|+++++++.|+++|+..   .+++++.+|+++..+
T Consensus        76 ~P~v~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~---~~~~~~~~~i~~~~~  152 (184)
T PF13848_consen   76 FPLVPELTPENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADD---FPRLLKYFGIDEDDL  152 (184)
T ss_dssp             STSCEEESTTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTT---THHHHHHTTTTTSSS
T ss_pred             cccccccchhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHH---hHHHHHHcCCCCccC
Confidence            999999999999999999877566666543  677889999999999999999999999996   567899999998889


Q ss_pred             cEEEEEeCCCCce-ecCCCCCCHHHHHHHHHH
Q 013976          228 KVLAYTGNDDAKK-HILDGELTLDKIKTFGED  258 (432)
Q Consensus       228 P~i~i~~~~~~~~-y~~~~~~~~~~i~~fi~~  258 (432)
                      |++++++...+.. |.+.+.++.++|.+|+++
T Consensus       153 P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d  184 (184)
T PF13848_consen  153 PALVIFDSNKGKYYYLPEGEITPESIEKFLND  184 (184)
T ss_dssp             SEEEEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred             CEEEEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence            9999998665443 445889999999999975

...

>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=1.9e-22  Score=193.07  Aligned_cols=214  Identities=29%  Similarity=0.473  Sum_probs=185.1

Q ss_pred             chhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCC
Q 013976          160 NAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDA  238 (432)
Q Consensus       160 ~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~  238 (432)
                      ...........+++.||++| ++|+++.+.|.+++..+++.+.++.|||+.   ++.+|+.|++.++  |++.++.++ .
T Consensus        39 ~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~---~~~~~~~y~i~gf--Ptl~~f~~~-~  112 (383)
T KOG0191|consen   39 FFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDE---HKDLCEKYGIQGF--PTLKVFRPG-K  112 (383)
T ss_pred             cHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchh---hHHHHHhcCCccC--cEEEEEcCC-C
Confidence            33444566668899999999 999999999999999999999999999999   6799999999999  999999877 5


Q ss_pred             ceecCCCCCCHHHHHHHHHHHhcCCcCccccCCCCCCCCCCceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHH
Q 013976          239 KKHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPT  318 (432)
Q Consensus       239 ~~y~~~~~~~~~~i~~fi~~~~~g~l~~~~~se~~p~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~  318 (432)
                      ....+.|..+.+.+..|+...+.........         +.+..++..+|...+.+.+.+++|.||+|||++|+.+.|.
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~  183 (383)
T KOG0191|consen  113 KPIDYSGPRNAESLAEFLIKELEPSVKKLVE---------GEVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPE  183 (383)
T ss_pred             ceeeccCcccHHHHHHHHHHhhccccccccC---------CceEEccccchhhhhhccCcceEEEEeccccHHhhhcChH
Confidence            6778889999999999999987644332111         1488999999999998889999999999999999999999


Q ss_pred             HHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCcccCceeccCCCCHHHHHHHHHhcCCCC
Q 013976          319 YNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIP  390 (432)
Q Consensus       319 ~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~  390 (432)
                      |.+++..+.....+.++.+||+....  ..+.+..+|++.+|++|..  -...|.|.++.+.|.+|+.+.....
T Consensus       184 ~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~f~~~~~--~~~~~~~~R~~~~i~~~v~~~~~~~  255 (383)
T KOG0191|consen  184 WEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLKLFPPGEE--DIYYYSGLRDSDSIVSFVEKKERRN  255 (383)
T ss_pred             HHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEEEecCCCc--ccccccccccHHHHHHHHHhhcCCC
Confidence            99999999754589999999984443  6899999999999999987  1337889999999999999998875

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=99.81  E-value=1.2e-18  Score=153.16  Aligned_cols=185  Identities=11%  Similarity=0.067  Sum_probs=139.2

Q ss_pred             eEEEEE---eC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCceecCCCCC
Q 013976          172 QLLLFA---VS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGEL  247 (432)
Q Consensus       172 ~i~~~~---~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~~  247 (432)
                      +++|++   +| ++|+.+.+.++++|..+. ++.+..++++... .+.+++.|+|...  |+++++.++......+.|..
T Consensus        23 i~~f~~~~a~wC~~C~~~~p~l~~la~~~~-~~~i~~v~vd~~~-~~~l~~~~~V~~~--Pt~~~f~~g~~~~~~~~G~~   98 (215)
T TIGR02187        23 IVVFTDNDKEGCQYCKETEQLLEELSEVSP-KLKLEIYDFDTPE-DKEEAEKYGVERV--PTTIILEEGKDGGIRYTGIP   98 (215)
T ss_pred             EEEEcCCCCCCCCchHHHHHHHHHHHhhCC-CceEEEEecCCcc-cHHHHHHcCCCcc--CEEEEEeCCeeeEEEEeecC
Confidence            556777   78 999999999999999995 4554455554322 6799999999998  99999876643224678888


Q ss_pred             CHHHHHHHHHHHhcCCcCccccCCCCCCCCCCceEEEecccchhhhhcCCCc-EEEEEeCCCChhhhhhHHHHHHHHHHh
Q 013976          248 TLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKD-VLLEIYAPWCGHCQAFEPTYNKLAKHL  326 (432)
Q Consensus       248 ~~~~i~~fi~~~~~g~l~~~~~se~~p~~~~~~v~~l~~~~~~~~~~~~~~~-~lv~f~~~~c~~c~~~~~~~~~la~~~  326 (432)
                      +.+.+.+|++.+++-  ...             -..|+..+.+. +...+++ .++.||++||++|+.+.+.+++++...
T Consensus        99 ~~~~l~~~i~~~~~~--~~~-------------~~~L~~~~~~~-l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~  162 (215)
T TIGR02187        99 AGYEFAALIEDIVRV--SQG-------------EPGLSEKTVEL-LQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALAN  162 (215)
T ss_pred             CHHHHHHHHHHHHHh--cCC-------------CCCCCHHHHHH-HHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhc
Confidence            889999999988631  100             01233333333 2233445 555599999999999999999998874


Q ss_pred             cCCCCEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCcccCceeccCCCCHHHHHHHHHh
Q 013976          327 RGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKK  385 (432)
Q Consensus       327 ~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~  385 (432)
                      .   ++.+..+|.+.+..  .+++|.++||++++.+|.      .+.|..+.+.+.+||.+
T Consensus       163 ~---~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~------~~~G~~~~~~l~~~l~~  214 (215)
T TIGR02187       163 D---KILGEMIEANENPDLAEKYGVMSVPKIVINKGVE------EFVGAYPEEQFLEYILS  214 (215)
T ss_pred             C---ceEEEEEeCCCCHHHHHHhCCccCCEEEEecCCE------EEECCCCHHHHHHHHHh
Confidence            2   59999999988877  689999999999987553      38898999999999875

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=99.80  E-value=2.9e-19  Score=138.75  Aligned_cols=101  Identities=18%  Similarity=0.253  Sum_probs=90.1

Q ss_pred             CCceEEEecccchhhh--hcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc---ccCCCCCC
Q 013976          278 DGDVKIVVGNNFDEIV--LDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH---HRAKSDGF  352 (432)
Q Consensus       278 ~~~v~~l~~~~~~~~~--~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~---~~~~i~~~  352 (432)
                      .+.|..|+..+|++.+  ...++.+||.||||||++|+.+.|.|+++|+.+++  .+.|++|||+.+..   .+++|.++
T Consensus         8 ~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~--~v~~~~Vd~d~~~~l~~~~~~I~~~   85 (113)
T cd03006           8 RSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSD--QVLFVAINCWWPQGKCRKQKHFFYF   85 (113)
T ss_pred             CCCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcC--CeEEEEEECCCChHHHHHhcCCccc
Confidence            4569999999999963  57789999999999999999999999999999987  69999999998875   37999999


Q ss_pred             ceEEEEeCCCcccCceeccCCCCHHHHHHHH
Q 013976          353 PTILFFPAGNKSFDPINVDVDRTVVALYKFL  383 (432)
Q Consensus       353 P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi  383 (432)
                      ||+++|++|..   +..|.|.++.+.|..|+
T Consensus        86 PTl~lf~~g~~---~~~y~G~~~~~~i~~~~  113 (113)
T cd03006          86 PVIHLYYRSRG---PIEYKGPMRAPYMEKFV  113 (113)
T ss_pred             CEEEEEECCcc---ceEEeCCCCHHHHHhhC
Confidence            99999998874   45899999999999874

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.79  E-value=2.6e-19  Score=141.02  Aligned_cols=104  Identities=23%  Similarity=0.416  Sum_probs=96.6

Q ss_pred             ceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEE
Q 013976          280 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILF  357 (432)
Q Consensus       280 ~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~  357 (432)
                      .+..++..+|++.+.+.+.||+|.|||+||++|+.+.|.+++++..|.+  .+.|+++|.+++..  .+|.|.++||+++
T Consensus        44 ~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g--~~k~~kvdtD~~~ela~~Y~I~avPtvlv  121 (150)
T KOG0910|consen   44 LFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAG--KFKLYKVDTDEHPELAEDYEISAVPTVLV  121 (150)
T ss_pred             cccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcC--eEEEEEEccccccchHhhcceeeeeEEEE
Confidence            4667788999999999999999999999999999999999999999987  79999999999888  7999999999999


Q ss_pred             EeCCCcccCceeccCCCCHHHHHHHHHhcCC
Q 013976          358 FPAGNKSFDPINVDVDRTVVALYKFLKKNAS  388 (432)
Q Consensus       358 ~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  388 (432)
                      |++|.+.+   .+.|..+.+.|.+||++.+.
T Consensus       122 fknGe~~d---~~vG~~~~~~l~~~i~k~l~  149 (150)
T KOG0910|consen  122 FKNGEKVD---RFVGAVPKEQLRSLIKKFLK  149 (150)
T ss_pred             EECCEEee---eecccCCHHHHHHHHHHHhc
Confidence            99999876   89999999999999998753

>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]

Probab=99.79  E-value=5.2e-18  Score=146.39  Aligned_cols=238  Identities=15%  Similarity=0.163  Sum_probs=172.4

Q ss_pred             CCcceeeeccCcccccCCCcccCccCCCCCChhHHHHHHHHhhCCCceeeCC-HHHHHHHhhcCCeEEEEEecCCCcchH
Q 013976            2 SWRTSTTFRASRRFTSSSTASIKLIMAAAPSKDAIVTWIKKKIGPGIYNITT-LDEAERVLTSETKVVLGYLNSLVGSES   80 (432)
Q Consensus         2 ~~Ptl~~f~~g~~~~~~~~~~~~~~Y~G~~~~~~i~~~l~~~~~~~~~~i~~-~~~l~~~~~~~~~~vv~f~~~~~~~~~   80 (432)
                      ||||+++||+|-.+.          |+|+|+.++|++|..|..++.+..|++ .-+++.+.....+..|.|..+ .+++.
T Consensus       100 GYPTIk~~kgd~a~d----------YRG~R~Kd~iieFAhR~a~aiI~pi~enQ~~fehlq~Rhq~ffVf~Gtg-e~PL~  168 (468)
T KOG4277|consen  100 GYPTIKFFKGDHAID----------YRGGREKDAIIEFAHRCAAAIIEPINENQIEFEHLQARHQPFFVFFGTG-EGPLF  168 (468)
T ss_pred             CCceEEEecCCeeee----------cCCCccHHHHHHHHHhcccceeeecChhHHHHHHHhhccCceEEEEeCC-CCcHH
Confidence            899999999999999          999999999999999999998888875 334455556677777755544 68999


Q ss_pred             HHHHHHhccCCCceEEEeCcHHHHhHcCCCCCCCCCeEEEEecCCCceecccCCCCCHHHHHHHHHhcCCCceeecCCCc
Q 013976           81 EVLADASRLEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTREN  160 (432)
Q Consensus        81 ~~f~~~a~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~i~l~~~~~~~~~~y~~g~~~~~~l~~fi~~~~~p~v~~l~~~~  160 (432)
                      ..|.++|...-.+....+.+++++..++--.  ..|.+.+|+  |+....+  ..-+.++|..||.....|.+-..+.-+
T Consensus       169 d~fidAASe~~~~a~FfSaseeVaPe~~~~k--empaV~VFK--Detf~i~--de~dd~dLseWinRERf~~fLa~dgfl  242 (468)
T KOG4277|consen  169 DAFIDAASEKFSVARFFSASEEVAPEENDAK--EMPAVAVFK--DETFEIE--DEGDDEDLSEWINRERFPGFLAADGFL  242 (468)
T ss_pred             HHHHHHhhhheeeeeeeccccccCCcccchh--hccceEEEc--cceeEEE--ecCchhHHHHHHhHhhccchhhcccch
Confidence            9999999443344444444556665544221  259999999  4555555  233557899999999999998888888


Q ss_pred             hhhhccCCCcceEEEEEeC------cchhhhHHHHHHHHHhccC------ceEEEEEecCCcccccchhhhhCCCCCCCc
Q 013976          161 APSVFESPIKNQLLLFAVS------NDSEKLLPVFEEAAKSFKG------KLIFVYVQMDNEDVGKPVSEYFGITGEAPK  228 (432)
Q Consensus       161 ~~~~~~~~~~~~i~~~~~~------~~~~~~~~~~~~~a~~~~~------~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P  228 (432)
                      +..+-.+++.+.+.+-...      .....+....+++|+.+++      .+.|+++|+.+      ++..+.+.....|
T Consensus       243 L~EiG~sGKLVaLaVidEkhk~nns~eh~~~~ki~eEaakd~Rd~pdfh~dFQF~hlDGnD------~~nqilM~als~P  316 (468)
T KOG4277|consen  243 LAEIGASGKLVALAVIDEKHKFNNSSEHREFHKIAEEAAKDLRDHPDFHNDFQFAHLDGND------LANQILMAALSEP  316 (468)
T ss_pred             HHHhCcCCceEEEEEeccccccCCcchhHHHHHHHHHHHHHHHhChhhhhhceeeccchhH------HHHHHHHHhhcCC
Confidence            7777667755444433222      2356677888889988874      59999999775      4455555555569


Q ss_pred             EEEEEeCCCCceecCC---CCCCHHHHHHHHHHHhcC
Q 013976          229 VLAYTGNDDAKKHILD---GELTLDKIKTFGEDFLEG  262 (432)
Q Consensus       229 ~i~i~~~~~~~~y~~~---~~~~~~~i~~fi~~~~~g  262 (432)
                      ++++++......|.-.   ...+.++|.+||++-..|
T Consensus       317 ~l~i~NtsnqeYfLse~d~qikniedilqFientseg  353 (468)
T KOG4277|consen  317 HLFIFNTSNQEYFLSEDDPQIKNIEDILQFIENTSEG  353 (468)
T ss_pred             eEEEEecCchheeeccCChhhhhHHHHHHHHhccccc
Confidence            9999988765555422   246889999999985443

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=99.78  E-value=1.3e-18  Score=134.88  Aligned_cols=101  Identities=32%  Similarity=0.651  Sum_probs=94.0

Q ss_pred             eEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEEE
Q 013976          281 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFF  358 (432)
Q Consensus       281 v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~  358 (432)
                      |..++.++|++.+.+.+++++|+||++||++|+.+.|.|.++++.+.+  ++.|+.+|++.+..  .+++|.++|++++|
T Consensus         1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~   78 (103)
T PF00085_consen    1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD--NVKFAKVDCDENKELCKKYGVKSVPTIIFF   78 (103)
T ss_dssp             SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT--TSEEEEEETTTSHHHHHHTTCSSSSEEEEE
T ss_pred             CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceeccccccccc--ccccchhhhhccchhhhccCCCCCCEEEEE
Confidence            567999999999977689999999999999999999999999999997  79999999998876  79999999999999


Q ss_pred             eCCCcccCceeccCCCCHHHHHHHHHhc
Q 013976          359 PAGNKSFDPINVDVDRTVVALYKFLKKN  386 (432)
Q Consensus       359 ~~g~~~~~~~~y~g~~~~~~l~~fi~~~  386 (432)
                      ++|....   .|.|..+.+.|.+||++|
T Consensus        79 ~~g~~~~---~~~g~~~~~~l~~~i~~~  103 (103)
T PF00085_consen   79 KNGKEVK---RYNGPRNAESLIEFIEKH  103 (103)
T ss_dssp             ETTEEEE---EEESSSSHHHHHHHHHHH
T ss_pred             ECCcEEE---EEECCCCHHHHHHHHHcC
Confidence            9998764   999999999999999986

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.77  E-value=2e-18  Score=133.10  Aligned_cols=97  Identities=25%  Similarity=0.547  Sum_probs=87.5

Q ss_pred             ceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEE
Q 013976          280 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILF  357 (432)
Q Consensus       280 ~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~  357 (432)
                      .|..|+..+|++.+ ..+++++|+||++||++|+.+.|.|.++|+.+++  .+.|+.+||+.+..  .+++|.++||+++
T Consensus         2 ~~~~l~~~~f~~~v-~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~   78 (101)
T cd03003           2 EIVTLDRGDFDAAV-NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDG--VIRIGAVNCGDDRMLCRSQGVNSYPSLYV   78 (101)
T ss_pred             CeEEcCHhhHHHHh-cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcC--ceEEEEEeCCccHHHHHHcCCCccCEEEE
Confidence            47789999999987 5568999999999999999999999999999987  69999999998877  6899999999999


Q ss_pred             EeCCCcccCceeccCCCCHHHHHHH
Q 013976          358 FPAGNKSFDPINVDVDRTVVALYKF  382 (432)
Q Consensus       358 ~~~g~~~~~~~~y~g~~~~~~l~~f  382 (432)
                      |++|....   .|.|.++.+.|.+|
T Consensus        79 ~~~g~~~~---~~~G~~~~~~l~~f  100 (101)
T cd03003          79 FPSGMNPE---KYYGDRSKESLVKF  100 (101)
T ss_pred             EcCCCCcc---cCCCCCCHHHHHhh
Confidence            99987543   89999999999887

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=99.77  E-value=3.4e-18  Score=132.86  Aligned_cols=103  Identities=61%  Similarity=1.093  Sum_probs=92.6

Q ss_pred             ceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc-ccCCCCCCceEEEE
Q 013976          280 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-HRAKSDGFPTILFF  358 (432)
Q Consensus       280 ~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-~~~~i~~~P~i~~~  358 (432)
                      +|..|++.+|++.+.+.+++++|+||++||++|+.+.|.|.++++.+++..++.++.+|++.++. ..+.+.++|++++|
T Consensus         1 ~v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~Pt~~~~   80 (104)
T cd02995           1 PVKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATANDVPSEFVVDGFPTILFF   80 (104)
T ss_pred             CeEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcchhhhhhccCCCCCEEEEE
Confidence            37889999999988777799999999999999999999999999999875679999999999876 56788999999999


Q ss_pred             eCCCcccCceeccCCCCHHHHHHHH
Q 013976          359 PAGNKSFDPINVDVDRTVVALYKFL  383 (432)
Q Consensus       359 ~~g~~~~~~~~y~g~~~~~~l~~fi  383 (432)
                      ++|.+. .+..|.|..+.+.|.+||
T Consensus        81 ~~~~~~-~~~~~~g~~~~~~l~~fi  104 (104)
T cd02995          81 PAGDKS-NPIKYEGDRTLEDLIKFI  104 (104)
T ss_pred             cCCCcC-CceEccCCcCHHHHHhhC
Confidence            999843 567899999999999986

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.76  E-value=2.7e-18  Score=133.28  Aligned_cols=100  Identities=28%  Similarity=0.589  Sum_probs=89.0

Q ss_pred             ceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEE
Q 013976          280 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILF  357 (432)
Q Consensus       280 ~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~  357 (432)
                      .+..++..+|++.+.+.+++++|.||++||++|+.+.|.|.+++..+.+  .+.|+.+||+.+..  .+++|.++|++++
T Consensus         2 ~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~   79 (104)
T cd03004           2 SVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKG--KVKVGSVDCQKYESLCQQANIRAYPTIRL   79 (104)
T ss_pred             cceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC--CcEEEEEECCchHHHHHHcCCCcccEEEE
Confidence            3677899999998877778999999999999999999999999999976  69999999999877  6899999999999


Q ss_pred             EeCCCcccCceeccCCCC-HHHHHHHH
Q 013976          358 FPAGNKSFDPINVDVDRT-VVALYKFL  383 (432)
Q Consensus       358 ~~~g~~~~~~~~y~g~~~-~~~l~~fi  383 (432)
                      |++|..  .+..|.|..+ .+.|.+||
T Consensus        80 ~~~g~~--~~~~~~G~~~~~~~l~~~i  104 (104)
T cd03004          80 YPGNAS--KYHSYNGWHRDADSILEFI  104 (104)
T ss_pred             EcCCCC--CceEccCCCCCHHHHHhhC
Confidence            999833  3558999887 99999885

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=99.76  E-value=4.6e-18  Score=132.74  Aligned_cols=104  Identities=15%  Similarity=0.107  Sum_probs=93.5

Q ss_pred             CCceEEEecccchhhhhcCCCcEEEEEeCCCChh--hh--hhHHHHHHHHHHh--cCCCCEEEEEEeCCCccc--ccCCC
Q 013976          278 DGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGH--CQ--AFEPTYNKLAKHL--RGVDSIVIAKMDGTTNEH--HRAKS  349 (432)
Q Consensus       278 ~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~--c~--~~~~~~~~la~~~--~~~~~~~~~~id~~~~~~--~~~~i  349 (432)
                      ...|..|+.+||++.+.+.+.++|++||++||++  |+  .+.|.+.++|..+  .+  ++.|+++|++.+..  .+++|
T Consensus         8 ~~~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~--~v~~~kVD~d~~~~La~~~~I   85 (120)
T cd03065           8 KDRVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDK--GIGFGLVDSKKDAKVAKKLGL   85 (120)
T ss_pred             CcceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcC--CCEEEEEeCCCCHHHHHHcCC
Confidence            3468889999999999888899999999999976  99  8889999999988  54  79999999999887  79999


Q ss_pred             CCCceEEEEeCCCcccCceeccCCCCHHHHHHHHHhcC
Q 013976          350 DGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA  387 (432)
Q Consensus       350 ~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  387 (432)
                      .++||+++|++|+.+    .|.|.++.+.|.+||.+..
T Consensus        86 ~~iPTl~lfk~G~~v----~~~G~~~~~~l~~~l~~~~  119 (120)
T cd03065          86 DEEDSIYVFKDDEVI----EYDGEFAADTLVEFLLDLI  119 (120)
T ss_pred             ccccEEEEEECCEEE----EeeCCCCHHHHHHHHHHHh
Confidence            999999999999754    6999999999999999754

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.75  E-value=6.5e-17  Score=155.03  Aligned_cols=295  Identities=20%  Similarity=0.322  Sum_probs=220.4

Q ss_pred             HHHHHhhcCCeEEEEEecCCCcc---hHHHHHHHh-ccCCCceEEEeC---cHHHHhHcCCCCCCCCCeEEEEecCCCce
Q 013976           56 EAERVLTSETKVVLGYLNSLVGS---ESEVLADAS-RLEDDVNFYQTT---NPDVAKIFHLDSKVNRPALVMVKKETEKI  128 (432)
Q Consensus        56 ~l~~~~~~~~~~vv~f~~~~~~~---~~~~f~~~a-~~~~~~~F~~~~---~~~~~~~~~~~~~~~~p~i~l~~~~~~~~  128 (432)
                      .....+......+|-|+.+.|++   ....|.+++ .+++.+.++.+.   +.++|..+++..   +|++.+|++. ...
T Consensus        39 ~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~g---fPtl~~f~~~-~~~  114 (383)
T KOG0191|consen   39 FFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQG---FPTLKVFRPG-KKP  114 (383)
T ss_pred             cHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCcc---CcEEEEEcCC-Cce
Confidence            33445667888999999977765   566788777 667777777754   668999999986   7999999987 678


Q ss_pred             ecccCCCCCHHHHHHHHHhcCCC-------c-eeecCCCchhhhc-cCCCcceEEEEEeC-cchhhhHHHHHHHHHhcc-
Q 013976          129 SYFADGKFDKSTIADFVFSNKLP-------L-VTIFTRENAPSVF-ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFK-  197 (432)
Q Consensus       129 ~~y~~g~~~~~~l~~fi~~~~~p-------~-v~~l~~~~~~~~~-~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~-  197 (432)
                      ..| .|..+.+.+..|+.....+       . +.+++..++.... .....+++.||++| .+|+.+.+.|.++|..+. 
T Consensus       115 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~  193 (383)
T KOG0191|consen  115 IDY-SGPRNAESLAEFLIKELEPSVKKLVEGEVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKS  193 (383)
T ss_pred             eec-cCcccHHHHHHHHHHhhccccccccCCceEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhcc
Confidence            888 8999999999999876554       3 5556666665533 34456788899999 999999999999999996 


Q ss_pred             -CceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCceecCCCCCCHHHHHHHHHHHhcCCcCcc-ccCCCCCC
Q 013976          198 -GKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLKPF-FKSDPIPE  275 (432)
Q Consensus       198 -~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g~l~~~-~~se~~p~  275 (432)
                       +.+.++.+||+.   ...+++.++++.+  |++.++..+....+.+.+.++.+.|..|+.+.......+. ..+-..+.
T Consensus       194 ~~~v~~~~~d~~~---~~~~~~~~~v~~~--Pt~~~f~~~~~~~~~~~~~R~~~~i~~~v~~~~~~~~~~~~~~~~~~~~  268 (383)
T KOG0191|consen  194 KENVELGKIDATV---HKSLASRLEVRGY--PTLKLFPPGEEDIYYYSGLRDSDSIVSFVEKKERRNIPEPELKEIEDKD  268 (383)
T ss_pred             CcceEEEeeccch---HHHHhhhhcccCC--ceEEEecCCCcccccccccccHHHHHHHHHhhcCCCCCCcccccccCcc
Confidence             679999999985   5688999999999  9998887765424556788999999999999876542111 11111110


Q ss_pred             CCCCceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHH-hcCCCCEEEEEEeCCCccc--ccCCCCCC
Q 013976          276 TNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKH-LRGVDSIVIAKMDGTTNEH--HRAKSDGF  352 (432)
Q Consensus       276 ~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~-~~~~~~~~~~~id~~~~~~--~~~~i~~~  352 (432)
                      ....  ..++.++|... ......+++.|+++||.+|..+.|.+...+.. +.....+.+.+++|.....  ....++.+
T Consensus       269 ~~~~--~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~  345 (383)
T KOG0191|consen  269 TFSP--TFLDTAEFLDS-LEKKKNKFVKFYAPWCGHCGGFAPVYEDKAELGYPDLSKIKAAKLDCALLKSLCQKAIVRGY  345 (383)
T ss_pred             cccc--chhhhhhhhhh-hHHhhhhHhhhhcchhhcccccchhHHHHHhccccccccceeeccccccccchhhHhhhhcC
Confidence            0001  11111222221 23346789999999999999999999999998 2233479999999887766  57788999


Q ss_pred             ceEEEEeCCCc
Q 013976          353 PTILFFPAGNK  363 (432)
Q Consensus       353 P~i~~~~~g~~  363 (432)
                      |++.++..+..
T Consensus       346 ~~~~~~~~~~~  356 (383)
T KOG0191|consen  346 PTIKLYNYGKN  356 (383)
T ss_pred             ceeEeeccccc
Confidence            99999987764

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=99.75  E-value=7.6e-18  Score=131.58  Aligned_cols=101  Identities=25%  Similarity=0.500  Sum_probs=88.6

Q ss_pred             ceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCC----CCEEEEEEeCCCccc--ccCCCCCCc
Q 013976          280 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV----DSIVIAKMDGTTNEH--HRAKSDGFP  353 (432)
Q Consensus       280 ~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~----~~~~~~~id~~~~~~--~~~~i~~~P  353 (432)
                      .|..+++++|++.+ +.+++++|.|||+||.+|+.+.|.|.+++..+++.    .++.++.+||+.+..  .+++|.++|
T Consensus         2 ~v~~l~~~~f~~~i-~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~P   80 (108)
T cd02996           2 EIVSLTSGNIDDIL-QSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYP   80 (108)
T ss_pred             ceEEcCHhhHHHHH-hcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCC
Confidence            47789999999976 66789999999999999999999999999988542    259999999999877  689999999


Q ss_pred             eEEEEeCCCcccCceeccCCCCHHHHHHHH
Q 013976          354 TILFFPAGNKSFDPINVDVDRTVVALYKFL  383 (432)
Q Consensus       354 ~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi  383 (432)
                      ++++|++|...  ...|.|.++.+.|.+||
T Consensus        81 tl~~~~~g~~~--~~~~~g~~~~~~l~~fi  108 (108)
T cd02996          81 TLKLFRNGMMM--KREYRGQRSVEALAEFV  108 (108)
T ss_pred             EEEEEeCCcCc--ceecCCCCCHHHHHhhC
Confidence            99999999742  35899999999999986

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=99.72  E-value=3.2e-17  Score=128.45  Aligned_cols=102  Identities=33%  Similarity=0.642  Sum_probs=89.2

Q ss_pred             eEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCC--ccc--ccCCCCCCceEE
Q 013976          281 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT--NEH--HRAKSDGFPTIL  356 (432)
Q Consensus       281 v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~--~~~--~~~~i~~~P~i~  356 (432)
                      |..|+..+|++.+.+.+++++|.||++||++|+.+.|.|.++++.+.+  .+.++.+||+.  +..  .+++|.++|+++
T Consensus         2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~--~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~   79 (109)
T cd03002           2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDG--LVQVAAVDCDEDKNKPLCGKYGVQGFPTLK   79 (109)
T ss_pred             eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcC--CceEEEEecCccccHHHHHHcCCCcCCEEE
Confidence            678999999999888788999999999999999999999999999986  69999999998  433  589999999999


Q ss_pred             EEeCCCcc--cCceeccCCCCHHHHHHHHH
Q 013976          357 FFPAGNKS--FDPINVDVDRTVVALYKFLK  384 (432)
Q Consensus       357 ~~~~g~~~--~~~~~y~g~~~~~~l~~fi~  384 (432)
                      +|++|..+  ..+..|.|.++.+.|.+||.
T Consensus        80 ~~~~~~~~~~~~~~~~~G~~~~~~l~~fi~  109 (109)
T cd03002          80 VFRPPKKASKHAVEDYNGERSAKAIVDFVL  109 (109)
T ss_pred             EEeCCCcccccccccccCccCHHHHHHHhC
Confidence            99988621  13568999999999999983

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.72  E-value=1.9e-17  Score=144.64  Aligned_cols=106  Identities=28%  Similarity=0.512  Sum_probs=99.4

Q ss_pred             CceEEEecccchhhhhcCC--CcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCce
Q 013976          279 GDVKIVVGNNFDEIVLDES--KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPT  354 (432)
Q Consensus       279 ~~v~~l~~~~~~~~~~~~~--~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~  354 (432)
                      ..|..+|..||.+.+...+  +||||+||+|||++|+++.|.+++++..+++  .+++++|||+....  ..|+|+++|+
T Consensus        23 ~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G--~f~LakvN~D~~p~vAaqfgiqsIPt  100 (304)
T COG3118          23 PGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKG--KFKLAKVNCDAEPMVAAQFGVQSIPT  100 (304)
T ss_pred             ccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCC--ceEEEEecCCcchhHHHHhCcCcCCe
Confidence            3499999999999887654  6999999999999999999999999999999  79999999999988  6899999999


Q ss_pred             EEEEeCCCcccCceeccCCCCHHHHHHHHHhcCCC
Q 013976          355 ILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASI  389 (432)
Q Consensus       355 i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~  389 (432)
                      +++|.+|+.++   .|.|....+.|.+||.+++..
T Consensus       101 V~af~dGqpVd---gF~G~qPesqlr~~ld~~~~~  132 (304)
T COG3118         101 VYAFKDGQPVD---GFQGAQPESQLRQFLDKVLPA  132 (304)
T ss_pred             EEEeeCCcCcc---ccCCCCcHHHHHHHHHHhcCh
Confidence            99999999987   899999999999999999987

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=99.71  E-value=6.6e-17  Score=124.69  Aligned_cols=98  Identities=26%  Similarity=0.451  Sum_probs=85.3

Q ss_pred             ceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEE
Q 013976          280 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILF  357 (432)
Q Consensus       280 ~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~  357 (432)
                      .|..|+.++|++.+ .  ..++|.|||+||++|+.+.|.|.+++..++. .++.++.+|++.+..  .+++|.++|++++
T Consensus         2 ~v~~l~~~~f~~~~-~--~~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~-~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~   77 (101)
T cd02994           2 NVVELTDSNWTLVL-E--GEWMIEFYAPWCPACQQLQPEWEEFADWSDD-LGINVAKVDVTQEPGLSGRFFVTALPTIYH   77 (101)
T ss_pred             ceEEcChhhHHHHh-C--CCEEEEEECCCCHHHHHHhHHHHHHHHhhcc-CCeEEEEEEccCCHhHHHHcCCcccCEEEE
Confidence            47889999999866 3  2389999999999999999999999998764 269999999998776  6899999999999


Q ss_pred             EeCCCcccCceeccCCCCHHHHHHHHHh
Q 013976          358 FPAGNKSFDPINVDVDRTVVALYKFLKK  385 (432)
Q Consensus       358 ~~~g~~~~~~~~y~g~~~~~~l~~fi~~  385 (432)
                      |++|..    ..|.|.++.+.|.+||++
T Consensus        78 ~~~g~~----~~~~G~~~~~~l~~~i~~  101 (101)
T cd02994          78 AKDGVF----RRYQGPRDKEDLISFIEE  101 (101)
T ss_pred             eCCCCE----EEecCCCCHHHHHHHHhC
Confidence            998863    289999999999999874

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=99.71  E-value=7.4e-17  Score=125.03  Aligned_cols=99  Identities=35%  Similarity=0.670  Sum_probs=89.8

Q ss_pred             eEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEEE
Q 013976          281 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFF  358 (432)
Q Consensus       281 v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~  358 (432)
                      |..+++.+|++.+.+.+.+++|+||++||++|+.+.|.|.+++..+.+  .+.|+.+|++.+..  .+++|.++|++++|
T Consensus         2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~--~~~~~~id~~~~~~~~~~~~i~~~P~~~~~   79 (103)
T cd03001           2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKG--IVKVGAVDADVHQSLAQQYGVRGFPTIKVF   79 (103)
T ss_pred             eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcC--CceEEEEECcchHHHHHHCCCCccCEEEEE
Confidence            677889999998877777899999999999999999999999999986  69999999998877  68999999999999


Q ss_pred             eCCCcccCceeccCCCCHHHHHHHH
Q 013976          359 PAGNKSFDPINVDVDRTVVALYKFL  383 (432)
Q Consensus       359 ~~g~~~~~~~~y~g~~~~~~l~~fi  383 (432)
                      ++|..  .+..|.|..+.++|.+|+
T Consensus        80 ~~~~~--~~~~~~g~~~~~~l~~~~  102 (103)
T cd03001          80 GAGKN--SPQDYQGGRTAKAIVSAA  102 (103)
T ss_pred             CCCCc--ceeecCCCCCHHHHHHHh
Confidence            98844  567899999999999997

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>PRK09381 trxA thioredoxin; Provisional

Probab=99.71  E-value=1.1e-16  Score=125.27  Aligned_cols=105  Identities=25%  Similarity=0.504  Sum_probs=94.2

Q ss_pred             CceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEE
Q 013976          279 GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTIL  356 (432)
Q Consensus       279 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~  356 (432)
                      ..|..+++.+|.+.+.+.+++++|.||++||++|+.+.|.|++++..+.+  ++.|+.+|++.+..  .++++.++|+++
T Consensus         3 ~~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~   80 (109)
T PRK09381          3 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTAPKYGIRGIPTLL   80 (109)
T ss_pred             CcceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCC--CcEEEEEECCCChhHHHhCCCCcCCEEE
Confidence            45788999999998877789999999999999999999999999999987  69999999998877  689999999999


Q ss_pred             EEeCCCcccCceeccCCCCHHHHHHHHHhcCC
Q 013976          357 FFPAGNKSFDPINVDVDRTVVALYKFLKKNAS  388 (432)
Q Consensus       357 ~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  388 (432)
                      +|++|..+.   .+.|..+.+.|..||..++.
T Consensus        81 ~~~~G~~~~---~~~G~~~~~~l~~~i~~~~~  109 (109)
T PRK09381         81 LFKNGEVAA---TKVGALSKGQLKEFLDANLA  109 (109)
T ss_pred             EEeCCeEEE---EecCCCCHHHHHHHHHHhcC
Confidence            999987654   78898899999999998763

>PTZ00102 disulphide isomerase; Provisional

Probab=99.70  E-value=3.2e-15  Score=148.64  Aligned_cols=224  Identities=13%  Similarity=0.191  Sum_probs=171.4

Q ss_pred             cCCCCCChhHHHHHHHHhhCCCceeeCCHHHHHHHhhcCCeEEEEEecCCC-c-chHHHHHHHh-ccCCCceEEEeCcHH
Q 013976           26 IMAAAPSKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNSLV-G-SESEVLADAS-RLEDDVNFYQTTNPD  102 (432)
Q Consensus        26 ~Y~G~~~~~~i~~~l~~~~~~~~~~i~~~~~l~~~~~~~~~~vv~f~~~~~-~-~~~~~f~~~a-~~~~~~~F~~~~~~~  102 (432)
                      .|.++.+.++|..||.....|.+..++. +.+..++.+...+ +.|+...+ . .....|.++| ++++.+.|+.+...+
T Consensus       212 ~~~~~~~~~~l~~fI~~~~~P~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~f~~vd~~~  289 (477)
T PTZ00102        212 ELFMGKTKEELEEFVSTESFPLFAEINA-ENYRRYISSGKDL-VWFCGTTEDYDKYKSVVRKVARKLREKYAFVWLDTEQ  289 (477)
T ss_pred             ccCCCCCHHHHHHHHHHcCCCceeecCc-cchHHHhcCCccE-EEEecCHHHHHHHHHHHHHHHHhccCceEEEEEechh
Confidence            3555679999999999999999988864 6666777665543 33443222 1 2445677888 788899999876554


Q ss_pred             ----HHhHcCCCCCCCCCeEEEEecCCCceecccCCC----CCHHHHHHHHHhcCC-----------------CceeecC
Q 013976          103 ----VAKIFHLDSKVNRPALVMVKKETEKISYFADGK----FDKSTIADFVFSNKL-----------------PLVTIFT  157 (432)
Q Consensus       103 ----~~~~~~~~~~~~~p~i~l~~~~~~~~~~y~~g~----~~~~~l~~fi~~~~~-----------------p~v~~l~  157 (432)
                          +++.+|+..   .|++++....+  .+.+ .+.    .+.+.|..|+.....                 ..+..++
T Consensus       290 ~~~~~~~~~gi~~---~P~~~i~~~~~--~y~~-~~~~~~~~~~~~l~~Fv~~~~~gk~~~~~~se~~p~~~~~~v~~l~  363 (477)
T PTZ00102        290 FGSHAKEHLLIEE---FPGLAYQSPAG--RYLL-PPAKESFDSVEALIEFFKDVEAGKVEKSIKSEPIPEEQDGPVKVVV  363 (477)
T ss_pred             cchhHHHhcCccc---CceEEEEcCCc--ccCC-CccccccCCHHHHHHHHHHHhCCCCCcccccCCCCCCCCCCeEEec
Confidence                567899875   79888776422  3334 332    688999999985321                 2367788


Q ss_pred             CCchhhh-ccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccC--ceEEEEEecCCcccccchhhhhCCCCCCCcEEEEE
Q 013976          158 RENAPSV-FESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG--KLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYT  233 (432)
Q Consensus       158 ~~~~~~~-~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~--~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~  233 (432)
                      .+++... ...++++++.||++| ++|+.+.+.|.++|..+++  .+.|+.+|++.   +...++.++++++  |+++++
T Consensus       364 ~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~---~~~~~~~~~v~~~--Pt~~~~  438 (477)
T PTZ00102        364 GNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTA---NETPLEEFSWSAF--PTILFV  438 (477)
T ss_pred             ccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCC---CccchhcCCCccc--CeEEEE
Confidence            8889876 567778899999999 9999999999999999875  59999999987   4467899999988  999999


Q ss_pred             eCCCCceecCCCCCCHHHHHHHHHHHhcC
Q 013976          234 GNDDAKKHILDGELTLDKIKTFGEDFLEG  262 (432)
Q Consensus       234 ~~~~~~~y~~~~~~~~~~i~~fi~~~~~g  262 (432)
                      ..++.....+.|..+.+.|.+|++++...
T Consensus       439 ~~~~~~~~~~~G~~~~~~l~~~i~~~~~~  467 (477)
T PTZ00102        439 KAGERTPIPYEGERTVEGFKEFVNKHATN  467 (477)
T ss_pred             ECCCcceeEecCcCCHHHHHHHHHHcCCC
Confidence            87765556789999999999999997753

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=99.70  E-value=2.4e-14  Score=141.94  Aligned_cols=310  Identities=15%  Similarity=0.181  Sum_probs=216.2

Q ss_pred             ceeeCCHHHHHHHhhcCCeEEEEEecCCCcc---hHHHHHHHh-ccC---CCceEEEe---CcHHHHhHcCCCCCCCCCe
Q 013976           48 IYNITTLDEAERVLTSETKVVLGYLNSLVGS---ESEVLADAS-RLE---DDVNFYQT---TNPDVAKIFHLDSKVNRPA  117 (432)
Q Consensus        48 ~~~i~~~~~l~~~~~~~~~~vv~f~~~~~~~---~~~~f~~~a-~~~---~~~~F~~~---~~~~~~~~~~~~~~~~~p~  117 (432)
                      +..+ +.+.++.+++.++.++|.|+.+.|.+   ....|.++| .+.   ..+.|+.+   .+.++|+++++..   +|+
T Consensus         3 v~~l-~~~~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~---~Pt   78 (462)
T TIGR01130         3 VLVL-TKDNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSG---YPT   78 (462)
T ss_pred             ceEC-CHHHHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCcc---ccE
Confidence            4455 56889999998999999999988864   345677766 332   34788874   3567999999986   799


Q ss_pred             EEEEecCCCceecccCCCCCHHHHHHHHHhcCCCceeecC-CCchhhhccCCCcceEEEEEeCcchhhhHHHHHHHHHhc
Q 013976          118 LVMVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFT-RENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSF  196 (432)
Q Consensus       118 i~l~~~~~~~~~~y~~g~~~~~~l~~fi~~~~~p~v~~l~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~~  196 (432)
                      +++|+.+......| .|..+.+.|..||.....|.+.+++ .+.+..+.... ...+++|.... -......+.++|..+
T Consensus        79 ~~~~~~g~~~~~~~-~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~-~~~vi~~~~~~-~~~~~~~~~~~a~~~  155 (462)
T TIGR01130        79 LKIFRNGEDSVSDY-NGPRDADGIVKYMKKQSGPAVKEIETVADLEAFLADD-DVVVIGFFKDL-DSELNDTFLSVAEKL  155 (462)
T ss_pred             EEEEeCCccceeEe-cCCCCHHHHHHHHHHhcCCCceeecCHHHHHHHHhcC-CcEEEEEECCC-CcHHHHHHHHHHHHh
Confidence            99998644225778 8999999999999999998888886 56666666664 44444444431 135667899999999


Q ss_pred             cCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCC-C-ceecCCCCC--CHHHHHHHHHHHhcCCcCccccCCC
Q 013976          197 KGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDD-A-KKHILDGEL--TLDKIKTFGEDFLEGKLKPFFKSDP  272 (432)
Q Consensus       197 ~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~-~-~~y~~~~~~--~~~~i~~fi~~~~~g~l~~~~~se~  272 (432)
                      .+...+.....+     ..+...++...   +.++++.... . ..+.+.|..  +.+.|.+|+....-           
T Consensus       156 ~~~~~~~~~~~~-----~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~fi~~~~~-----------  216 (462)
T TIGR01130       156 RDVYFFFAHSSD-----VAAFAKLGAFP---DSVVLFKPKDEDEKFSKVDGEMDTDVSDLEKFIRAESL-----------  216 (462)
T ss_pred             hhccceEEecCC-----HHHHhhcCCCC---CcEEEecccccccccccccCcccCCHHHHHHHHHHcCC-----------
Confidence            986553322211     24456666643   3343443322 2 213455554  66899999998542           


Q ss_pred             CCCCCCCceEEEecccchhhhhcCCCcEEEEEe--CCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCC
Q 013976          273 IPETNDGDVKIVVGNNFDEIVLDESKDVLLEIY--APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAK  348 (432)
Q Consensus       273 ~p~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~--~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~  348 (432)
                            +.+..++..++...... + +.+++|+  ......|..+...|.++|+.+++ ..+.|+.+|+.....  ..++
T Consensus       217 ------p~v~~~~~~~~~~~~~~-~-~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~i~f~~~d~~~~~~~~~~~~  287 (462)
T TIGR01130       217 ------PLVGEFTQETAAKYFES-G-PLVVLYYNVDESLDPFEELRNRFLEAAKKFRG-KFVNFAVADEEDFGRELEYFG  287 (462)
T ss_pred             ------CceEeeCCcchhhHhCC-C-CceeEEEEecCCchHHHHHHHHHHHHHHHCCC-CeEEEEEecHHHhHHHHHHcC
Confidence                  24777888888887633 3 5444443  34556689999999999999985 369999999887655  4566


Q ss_pred             CC--CCceEEEEeCCCcccCceeccC-CCCHHHHHHHHHhcCCCCCccc
Q 013976          349 SD--GFPTILFFPAGNKSFDPINVDV-DRTVVALYKFLKKNASIPFKIQ  394 (432)
Q Consensus       349 i~--~~P~i~~~~~g~~~~~~~~y~g-~~~~~~l~~fi~~~~~~~~~~~  394 (432)
                      +.  .+|+++++.....  +...+.+ ..+.+.|.+||++..+...+..
T Consensus       288 ~~~~~~P~~vi~~~~~~--~~y~~~~~~~~~~~i~~fi~~~~~g~~~~~  334 (462)
T TIGR01130       288 LKAEKFPAVAIQDLEGN--KKYPMDQEEFSSENLEAFVKDFLDGKLKPY  334 (462)
T ss_pred             CCccCCceEEEEeCCcc--cccCCCcCCCCHHHHHHHHHHHhcCCCCee
Confidence            66  7999999965431  1124554 7899999999999988776644

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=99.69  E-value=1.4e-16  Score=124.40  Aligned_cols=101  Identities=32%  Similarity=0.676  Sum_probs=86.4

Q ss_pred             ceEEEecccchhhhh--cCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCc-cc--c-cCCCCCCc
Q 013976          280 DVKIVVGNNFDEIVL--DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN-EH--H-RAKSDGFP  353 (432)
Q Consensus       280 ~v~~l~~~~~~~~~~--~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~--~-~~~i~~~P  353 (432)
                      .|..++..+|+..+.  +.+++++|.||++||++|+.+.|.|.+++..+++ .++.++.+|++.+ ..  . .+++.++|
T Consensus         2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~-~~~~~~~vd~d~~~~~~~~~~~~v~~~P   80 (109)
T cd02993           2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAG-SNVKVAKFNADGEQREFAKEELQLKSFP   80 (109)
T ss_pred             cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhcc-CCeEEEEEECCccchhhHHhhcCCCcCC
Confidence            377889999999874  3468999999999999999999999999999985 2699999999974 33  2 58999999


Q ss_pred             eEEEEeCCCcccCceeccC-CCCHHHHHHHH
Q 013976          354 TILFFPAGNKSFDPINVDV-DRTVVALYKFL  383 (432)
Q Consensus       354 ~i~~~~~g~~~~~~~~y~g-~~~~~~l~~fi  383 (432)
                      ++++|++|..  .+..|.| .++.++|..||
T Consensus        81 ti~~f~~~~~--~~~~y~g~~~~~~~l~~f~  109 (109)
T cd02993          81 TILFFPKNSR--QPIKYPSEQRDVDSLLMFV  109 (109)
T ss_pred             EEEEEcCCCC--CceeccCCCCCHHHHHhhC
Confidence            9999988765  5678999 48999999986

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=99.69  E-value=7.6e-17  Score=126.15  Aligned_cols=99  Identities=19%  Similarity=0.395  Sum_probs=85.3

Q ss_pred             EEecccchhhhhc--CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEEE
Q 013976          283 IVVGNNFDEIVLD--ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFF  358 (432)
Q Consensus       283 ~l~~~~~~~~~~~--~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~  358 (432)
                      .++.++|++.+..  .+++++|.||++||++|+.+.|.|.++++.+++. ++.++++|++.+..  .+++|.++|++++|
T Consensus         8 ~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~-~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~   86 (111)
T cd02963           8 SLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPL-GVGIATVNAGHERRLARKLGAHSVPAIVGI   86 (111)
T ss_pred             eeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhc-CceEEEEeccccHHHHHHcCCccCCEEEEE
Confidence            4567788776643  5689999999999999999999999999999763 69999999998766  68999999999999


Q ss_pred             eCCCcccCceeccCCCCHHHHHHHHHh
Q 013976          359 PAGNKSFDPINVDVDRTVVALYKFLKK  385 (432)
Q Consensus       359 ~~g~~~~~~~~y~g~~~~~~l~~fi~~  385 (432)
                      ++|+.+.   .+.|..+.+.|.+||.+
T Consensus        87 ~~g~~~~---~~~G~~~~~~l~~~i~~  110 (111)
T cd02963          87 INGQVTF---YHDSSFTKQHVVDFVRK  110 (111)
T ss_pred             ECCEEEE---EecCCCCHHHHHHHHhc
Confidence            9886543   67888999999999986

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=99.69  E-value=1.4e-16  Score=123.19  Aligned_cols=98  Identities=33%  Similarity=0.666  Sum_probs=86.0

Q ss_pred             eEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcC-CCCEEEEEEeCCCccc--ccCCCCCCceEEE
Q 013976          281 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRG-VDSIVIAKMDGTTNEH--HRAKSDGFPTILF  357 (432)
Q Consensus       281 v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~-~~~~~~~~id~~~~~~--~~~~i~~~P~i~~  357 (432)
                      +..|++++|+..+.+  +.++|.||++||++|+.+.|.|.+++..+++ .+.+.++.+||+.+..  .+++|.++|++++
T Consensus         2 ~~~l~~~~f~~~~~~--~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~   79 (102)
T cd03005           2 VLELTEDNFDHHIAE--GNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLL   79 (102)
T ss_pred             eeECCHHHHHHHhhc--CCEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEE
Confidence            567899999998843  3599999999999999999999999999976 3479999999998876  6899999999999


Q ss_pred             EeCCCcccCceeccCCCCHHHHHHHH
Q 013976          358 FPAGNKSFDPINVDVDRTVVALYKFL  383 (432)
Q Consensus       358 ~~~g~~~~~~~~y~g~~~~~~l~~fi  383 (432)
                      |++|...   ..|.|..+.+.|.+||
T Consensus        80 ~~~g~~~---~~~~G~~~~~~l~~~i  102 (102)
T cd03005          80 FKDGEKV---DKYKGTRDLDSLKEFV  102 (102)
T ss_pred             EeCCCee---eEeeCCCCHHHHHhhC
Confidence            9988754   3899999999999885

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=99.68  E-value=1.5e-16  Score=138.31  Aligned_cols=109  Identities=27%  Similarity=0.567  Sum_probs=94.3

Q ss_pred             CCceEEEecccchhhhhcC----CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCC
Q 013976          278 DGDVKIVVGNNFDEIVLDE----SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDG  351 (432)
Q Consensus       278 ~~~v~~l~~~~~~~~~~~~----~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~  351 (432)
                      ...|..++..+|++.+...    +++++|.||++||++|+.+.|.|+++++.+++  .+.|+.+|++.+..  .+++|.+
T Consensus        29 ~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~--~v~~~~VD~~~~~~l~~~~~I~~  106 (224)
T PTZ00443         29 ANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKG--QVNVADLDATRALNLAKRFAIKG  106 (224)
T ss_pred             CCCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCC--CeEEEEecCcccHHHHHHcCCCc
Confidence            3568999999999987543    47999999999999999999999999999987  69999999998876  6899999


Q ss_pred             CceEEEEeCCCcccCceeccCCCCHHHHHHHHHhcCCCCC
Q 013976          352 FPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPF  391 (432)
Q Consensus       352 ~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~~  391 (432)
                      +|++++|++|....   .+.|.++.+.|.+|+.++.....
T Consensus       107 ~PTl~~f~~G~~v~---~~~G~~s~e~L~~fi~~~~~~~~  143 (224)
T PTZ00443        107 YPTLLLFDKGKMYQ---YEGGDRSTEKLAAFALGDFKKAL  143 (224)
T ss_pred             CCEEEEEECCEEEE---eeCCCCCHHHHHHHHHHHHHhhc
Confidence            99999999886542   34567999999999999986444

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=99.68  E-value=2e-16  Score=120.81  Aligned_cols=93  Identities=20%  Similarity=0.414  Sum_probs=82.6

Q ss_pred             ccchhhhhcC-CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCc
Q 013976          287 NNFDEIVLDE-SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNK  363 (432)
Q Consensus       287 ~~~~~~~~~~-~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~~~g~~  363 (432)
                      ++|++.+.+. +++++|.||++||++|+.+.|.|.+++..+.+  .+.++.+|++.+..  .+++|.++|++++|++|+.
T Consensus         1 ~~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~   78 (96)
T cd02956           1 QNFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQG--QFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQP   78 (96)
T ss_pred             CChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCC--cEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEE
Confidence            3678877655 68999999999999999999999999999987  69999999999877  6899999999999998876


Q ss_pred             ccCceeccCCCCHHHHHHHHH
Q 013976          364 SFDPINVDVDRTVVALYKFLK  384 (432)
Q Consensus       364 ~~~~~~y~g~~~~~~l~~fi~  384 (432)
                      +.   .+.|..+.+.|..||+
T Consensus        79 ~~---~~~g~~~~~~l~~~l~   96 (96)
T cd02956          79 VD---GFQGAQPEEQLRQMLD   96 (96)
T ss_pred             ee---eecCCCCHHHHHHHhC
Confidence            54   7999999999999874

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=99.67  E-value=6.1e-16  Score=120.28  Aligned_cols=101  Identities=44%  Similarity=0.864  Sum_probs=88.9

Q ss_pred             eEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCC-ccc--ccCCCCCCceEEE
Q 013976          281 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT-NEH--HRAKSDGFPTILF  357 (432)
Q Consensus       281 v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~-~~~--~~~~i~~~P~i~~  357 (432)
                      |..+++.+|++.+.+.+++++|.||++||.+|+.+.|.|.+++..++...++.++.+|++. +..  .+++|.++|++++
T Consensus         2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~   81 (105)
T cd02998           2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKF   81 (105)
T ss_pred             eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEE
Confidence            5678899999987666679999999999999999999999999999854579999999999 665  6899999999999


Q ss_pred             EeCCCcccCceeccCCCCHHHHHHHH
Q 013976          358 FPAGNKSFDPINVDVDRTVVALYKFL  383 (432)
Q Consensus       358 ~~~g~~~~~~~~y~g~~~~~~l~~fi  383 (432)
                      |.+|..  ....|.|..+.+.|.+||
T Consensus        82 ~~~~~~--~~~~~~g~~~~~~l~~~i  105 (105)
T cd02998          82 FPKGST--EPVKYEGGRDLEDLVKFV  105 (105)
T ss_pred             EeCCCC--CccccCCccCHHHHHhhC
Confidence            988854  456899999999999985

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells

Probab=99.67  E-value=3.2e-16  Score=120.66  Aligned_cols=98  Identities=23%  Similarity=0.341  Sum_probs=79.7

Q ss_pred             eEEEecccchhhhhcCCCcEEEEEeC--CCCh---hhhhhHHHHHHHHHHhcCCCCEEEEEEeCC-----Cccc--ccCC
Q 013976          281 VKIVVGNNFDEIVLDESKDVLLEIYA--PWCG---HCQAFEPTYNKLAKHLRGVDSIVIAKMDGT-----TNEH--HRAK  348 (432)
Q Consensus       281 v~~l~~~~~~~~~~~~~~~~lv~f~~--~~c~---~c~~~~~~~~~la~~~~~~~~~~~~~id~~-----~~~~--~~~~  348 (432)
                      +..|+..||++.+ .....+||.|||  |||+   +|+.+.|.+.+.+      ..+.++.+||+     ++..  .+|+
T Consensus         3 ~v~L~~~nF~~~v-~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa------~~v~lakVd~~d~~~~~~~~L~~~y~   75 (116)
T cd03007           3 CVDLDTVTFYKVI-PKFKYSLVKFDTAYPYGEKHEAFTRLAESSASAT------DDLLVAEVGIKDYGEKLNMELGERYK   75 (116)
T ss_pred             eeECChhhHHHHH-hcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhc------CceEEEEEecccccchhhHHHHHHhC
Confidence            6779999999977 667889999999  9999   6666555554443      24999999994     3333  7899


Q ss_pred             CC--CCceEEEEeCCCcccCceeccCC-CCHHHHHHHHHhc
Q 013976          349 SD--GFPTILFFPAGNKSFDPINVDVD-RTVVALYKFLKKN  386 (432)
Q Consensus       349 i~--~~P~i~~~~~g~~~~~~~~y~g~-~~~~~l~~fi~~~  386 (432)
                      |+  +||||.+|++|... .|+.|.|. ++.+.|.+||+++
T Consensus        76 I~~~gyPTl~lF~~g~~~-~~~~Y~G~~r~~~~lv~~v~~~  115 (116)
T cd03007          76 LDKESYPVIYLFHGGDFE-NPVPYSGADVTVDALQRFLKGN  115 (116)
T ss_pred             CCcCCCCEEEEEeCCCcC-CCccCCCCcccHHHHHHHHHhc
Confidence            99  99999999999643 56799996 9999999999987

It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=99.66  E-value=1.7e-16  Score=121.83  Aligned_cols=77  Identities=21%  Similarity=0.269  Sum_probs=69.0

Q ss_pred             ccchhhhhc-CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCc
Q 013976          287 NNFDEIVLD-ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNK  363 (432)
Q Consensus       287 ~~~~~~~~~-~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~~~g~~  363 (432)
                      ++|++.+.. .+++++|.|||+||++|+.|.|.+.+++..+.+  .+.|+++|++++..  .+++|.++||+++|++|+.
T Consensus         3 ~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~--~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~~   80 (114)
T cd02954           3 WAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSN--FAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNKH   80 (114)
T ss_pred             HHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccC--ceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEE
Confidence            567777754 568999999999999999999999999999987  58999999999988  6899999999999999988


Q ss_pred             cc
Q 013976          364 SF  365 (432)
Q Consensus       364 ~~  365 (432)
                      +.
T Consensus        81 v~   82 (114)
T cd02954          81 MK   82 (114)
T ss_pred             EE
Confidence            74

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=99.65  E-value=3.7e-16  Score=119.54  Aligned_cols=90  Identities=24%  Similarity=0.432  Sum_probs=76.1

Q ss_pred             ccchhhhh-cCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCC-Cccc--ccCCCCCCceEEEEeCCC
Q 013976          287 NNFDEIVL-DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT-TNEH--HRAKSDGFPTILFFPAGN  362 (432)
Q Consensus       287 ~~~~~~~~-~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~-~~~~--~~~~i~~~P~i~~~~~g~  362 (432)
                      +++.+.+. ..+++++|.|||+||++|+.+.|.|+++++.+++   +.++.+|++ .+..  .+++|.++||+++|++| 
T Consensus         7 ~~~~~~~~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~---~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g-   82 (100)
T cd02999           7 NIALDLMAFNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ---IRHLAIEESSIKPSLLSRYGVVGFPTILLFNST-   82 (100)
T ss_pred             hHHHHHHHhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc---CceEEEECCCCCHHHHHhcCCeecCEEEEEcCC-
Confidence            34555554 3568899999999999999999999999999965   788999988 4554  68999999999999988 


Q ss_pred             cccCceeccCCCCHHHHHHHH
Q 013976          363 KSFDPINVDVDRTVVALYKFL  383 (432)
Q Consensus       363 ~~~~~~~y~g~~~~~~l~~fi  383 (432)
                      ...   .|.|.++.+.|.+||
T Consensus        83 ~~~---~~~G~~~~~~l~~f~  100 (100)
T cd02999          83 PRV---RYNGTRTLDSLAAFY  100 (100)
T ss_pred             cee---EecCCCCHHHHHhhC
Confidence            433   899999999999985

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>PHA02278 thioredoxin-like protein

Probab=99.65  E-value=3.8e-16  Score=119.22  Aligned_cols=90  Identities=13%  Similarity=0.218  Sum_probs=76.8

Q ss_pred             ccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCcc----c--ccCCCCCCceEEEEeC
Q 013976          287 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE----H--HRAKSDGFPTILFFPA  360 (432)
Q Consensus       287 ~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~----~--~~~~i~~~P~i~~~~~  360 (432)
                      ++|.+.+ ..+++++|.|||+||++|+.+.|.+++++..+..  .+.|+.+|++.+.    .  .+++|.++||+++|++
T Consensus         5 ~~~~~~i-~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~--~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~   81 (103)
T PHA02278          5 VDLNTAI-RQKKDVIVMITQDNCGKCEILKSVIPMFQESGDI--KKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKD   81 (103)
T ss_pred             HHHHHHH-hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcC--CceEEEEECCccccccHHHHHHCCCccccEEEEEEC
Confidence            5677766 5678999999999999999999999999988654  4778999999763    2  6899999999999999


Q ss_pred             CCcccCceeccCCCCHHHHHHH
Q 013976          361 GNKSFDPINVDVDRTVVALYKF  382 (432)
Q Consensus       361 g~~~~~~~~y~g~~~~~~l~~f  382 (432)
                      |+.+.   +..|..+.+.|.++
T Consensus        82 G~~v~---~~~G~~~~~~l~~~  100 (103)
T PHA02278         82 GQLVK---KYEDQVTPMQLQEL  100 (103)
T ss_pred             CEEEE---EEeCCCCHHHHHhh
Confidence            98875   78888888888765

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=99.65  E-value=7.9e-16  Score=118.97  Aligned_cols=100  Identities=48%  Similarity=0.953  Sum_probs=88.7

Q ss_pred             EecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEEEeCC
Q 013976          284 VVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAG  361 (432)
Q Consensus       284 l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~~~g  361 (432)
                      |++.+|++.+. .+++++|.||++||.+|+.+.+.|.+++..+++..++.++.+|++.+..  .+++|.++|++++|++|
T Consensus         1 l~~~~~~~~~~-~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~   79 (102)
T TIGR01126         1 LTASNFDDIVL-SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKG   79 (102)
T ss_pred             CchhhHHHHhc-cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCC
Confidence            45688998874 7889999999999999999999999999999875569999999998877  68999999999999988


Q ss_pred             CcccCceeccCCCCHHHHHHHHHhcC
Q 013976          362 NKSFDPINVDVDRTVVALYKFLKKNA  387 (432)
Q Consensus       362 ~~~~~~~~y~g~~~~~~l~~fi~~~~  387 (432)
                      ..   +..|.|..+.+.|..||.+++
T Consensus        80 ~~---~~~~~g~~~~~~l~~~i~~~~  102 (102)
T TIGR01126        80 KK---PVDYEGGRDLEAIVEFVNEKS  102 (102)
T ss_pred             Cc---ceeecCCCCHHHHHHHHHhcC
Confidence            64   448999999999999999864

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]

Probab=99.63  E-value=2.4e-13  Score=128.99  Aligned_cols=324  Identities=14%  Similarity=0.141  Sum_probs=229.4

Q ss_pred             HHHHHHHHhh----CCCceeeCCHHHHHHHhhcCCeEEEEEecCCCcc---hHHHHHHHh-ccCC---CceEEE---eCc
Q 013976           35 AIVTWIKKKI----GPGIYNITTLDEAERVLTSETKVVLGYLNSLVGS---ESEVLADAS-RLED---DVNFYQ---TTN  100 (432)
Q Consensus        35 ~i~~~l~~~~----~~~~~~i~~~~~l~~~~~~~~~~vv~f~~~~~~~---~~~~f~~~a-~~~~---~~~F~~---~~~  100 (432)
                      .++.|+....    ...+.++ +.+.++.++..+..++|-||..+|+.   +...|.++| .+..   .+..+.   +.+
T Consensus        10 ~~~~~~~~a~~~~~~~~Vl~L-t~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~   88 (493)
T KOG0190|consen   10 LPVASSEAASVPKAEEDVLVL-TKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEE   88 (493)
T ss_pred             cchhhhhhhhcCCcccceEEE-ecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchh
Confidence            3444554443    3346666 46999999999999999999999975   677899988 4443   456665   346


Q ss_pred             HHHHhHcCCCCCCCCCeEEEEecCCCceecccCCCCCHHHHHHHHHhcCCCceeecCCCc-hhhhccCCCcceEE-EEEe
Q 013976          101 PDVAKIFHLDSKVNRPALVMVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTREN-APSVFESPIKNQLL-LFAV  178 (432)
Q Consensus       101 ~~~~~~~~~~~~~~~p~i~l~~~~~~~~~~y~~g~~~~~~l~~fi~~~~~p~v~~l~~~~-~~~~~~~~~~~~i~-~~~~  178 (432)
                      .++|.+|++..   +|++.+||++.. ...| .|..+.+.|..|++..+-|.+..+.... ...+... ..+.++ +|.+
T Consensus        89 ~~~~~~y~v~g---yPTlkiFrnG~~-~~~Y-~G~r~adgIv~wl~kq~gPa~~~l~~~~~a~~~l~~-~~~~vig~F~d  162 (493)
T KOG0190|consen   89 SDLASKYEVRG---YPTLKIFRNGRS-AQDY-NGPREADGIVKWLKKQSGPASKTLKTVDEAEEFLSK-KDVVVIGFFKD  162 (493)
T ss_pred             hhhHhhhcCCC---CCeEEEEecCCc-ceec-cCcccHHHHHHHHHhccCCCceecccHHHHHhhccC-CceEEEEEecc
Confidence            78999999986   899999998543 6889 9999999999999999999999988644 4445554 455544 4433


Q ss_pred             CcchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCceecCCCCCCHHHHHHHHHH
Q 013976          179 SNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGED  258 (432)
Q Consensus       179 ~~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~  258 (432)
                      .....   ..+-..|..+.+.+.|+.-.      ...+...+++.....|.++++.......+.|+|.++.+.|.+||..
T Consensus       163 ~~~~~---~~~~~~a~~l~~d~~F~~ts------~~~~~~~~~~~~~~~~~i~l~kk~d~~~~~~~~~~~~~~l~~Fi~~  233 (493)
T KOG0190|consen  163 LESLA---ESFFDAASKLRDDYKFAHTS------DSDVAKKLELNTEGTFPIVLFKKFDELLVKYDGSFTPELLKKFIQE  233 (493)
T ss_pred             cccch---HHHHHHHHhccccceeeccC------cHhHHhhccCCCCCcceEEeccccccchhhcccccCHHHHHHHHHH
Confidence            32222   45666778888889998322      2366788887643245566665555455566899999999999998


Q ss_pred             HhcCCcCccccCCCCCCCCCCceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEe
Q 013976          259 FLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD  338 (432)
Q Consensus       259 ~~~g~l~~~~~se~~p~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id  338 (432)
                      ...                 +.|..++..++.......-..-+.+|-..-|..-...++.+.++|+.|++  .+.|+.+|
T Consensus       234 ~~~-----------------plv~~ft~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~vAk~f~~--~l~Fi~~d  294 (493)
T KOG0190|consen  234 NSL-----------------PLVTEFTVANNAKIYSSFVKLGLDFFVFFKCNRFEELRKKFEEVAKKFKG--KLRFILID  294 (493)
T ss_pred             hcc-----------------cccceecccccceeeccccccceeEEeccccccHHHHHHHHHHHHHhccc--ceEEEEEC
Confidence            653                 23566666666664423225566666667788888899999999999998  79999997


Q ss_pred             CCCccc--ccCCCC--CCceEEEEeCCCcccCceeccCCCCHHHHHHHHHhcCCCCCccc
Q 013976          339 GTTNEH--HRAKSD--GFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPFKIQ  394 (432)
Q Consensus       339 ~~~~~~--~~~~i~--~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~~~~~  394 (432)
                      ......  ..+++.  ..|..++..++... ++..=.+..+.++|..|+++.+.......
T Consensus       295 ~e~~~~~~~~~Gl~~~~~~~~~v~~~~~~~-Ky~~~~e~~~~~~ie~f~~~~l~Gk~~p~  353 (493)
T KOG0190|consen  295 PESFARVLEFFGLEEEQLPIRAVILNEDGS-KYPLEEEELDQENIESFVKDFLDGKVKPH  353 (493)
T ss_pred             hHHhhHHHHhcCcccccCCeeEEeeccccc-cccCccccccHHHHHHHHHHHhcCccccc
Confidence            666655  456666  55634444444332 33333345888899999999998777554

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=99.63  E-value=1.9e-15  Score=117.30  Aligned_cols=99  Identities=30%  Similarity=0.631  Sum_probs=85.7

Q ss_pred             eEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCC--ccc--ccCCCCCCceEE
Q 013976          281 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT--NEH--HRAKSDGFPTIL  356 (432)
Q Consensus       281 v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~--~~~--~~~~i~~~P~i~  356 (432)
                      +..++..+|++.+ ..+++++|.||++||.+|+.+.|.+.+++..+.....+.++.+|++.  +..  .+++|.++|+++
T Consensus         2 ~~~l~~~~~~~~~-~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~   80 (104)
T cd02997           2 VVHLTDEDFRKFL-KKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFK   80 (104)
T ss_pred             eEEechHhHHHHH-hhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEE
Confidence            5678889999876 55669999999999999999999999999999854479999999998  444  588999999999


Q ss_pred             EEeCCCcccCceeccCCCCHHHHHHHH
Q 013976          357 FFPAGNKSFDPINVDVDRTVVALYKFL  383 (432)
Q Consensus       357 ~~~~g~~~~~~~~y~g~~~~~~l~~fi  383 (432)
                      +|++|+...   .|.|..+.+.+.+||
T Consensus        81 ~~~~g~~~~---~~~g~~~~~~l~~~l  104 (104)
T cd02997          81 YFENGKFVE---KYEGERTAEDIIEFM  104 (104)
T ss_pred             EEeCCCeeE---EeCCCCCHHHHHhhC
Confidence            999987543   899999999999885

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>PRK10996 thioredoxin 2; Provisional

Probab=99.62  E-value=2.3e-15  Score=122.54  Aligned_cols=104  Identities=23%  Similarity=0.557  Sum_probs=91.9

Q ss_pred             CCceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceE
Q 013976          278 DGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTI  355 (432)
Q Consensus       278 ~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i  355 (432)
                      ++.+..++..+|++.+ +.++.++|.||++||++|+.+.+.|.+++..+.+  ++.|+.+|++.+..  .+++|.++|++
T Consensus        34 ~~~~i~~~~~~~~~~i-~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~--~v~~~~vd~~~~~~l~~~~~V~~~Ptl  110 (139)
T PRK10996         34 DGEVINATGETLDKLL-QDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG--KVRFVKVNTEAERELSARFRIRSIPTI  110 (139)
T ss_pred             CCCCEEcCHHHHHHHH-hCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCC--CeEEEEEeCCCCHHHHHhcCCCccCEE
Confidence            4556778889999866 5679999999999999999999999999999887  69999999998777  68999999999


Q ss_pred             EEEeCCCcccCceeccCCCCHHHHHHHHHhcC
Q 013976          356 LFFPAGNKSFDPINVDVDRTVVALYKFLKKNA  387 (432)
Q Consensus       356 ~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  387 (432)
                      ++|++|+.+.   .+.|..+.+.|.+||++++
T Consensus       111 ii~~~G~~v~---~~~G~~~~e~l~~~l~~~~  139 (139)
T PRK10996        111 MIFKNGQVVD---MLNGAVPKAPFDSWLNEAL  139 (139)
T ss_pred             EEEECCEEEE---EEcCCCCHHHHHHHHHHhC
Confidence            9999988764   7889999999999999763

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=99.61  E-value=4.7e-15  Score=116.38  Aligned_cols=102  Identities=32%  Similarity=0.623  Sum_probs=83.8

Q ss_pred             ceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCC-CCEEEEEEeCCCccc----ccCCCCCCce
Q 013976          280 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV-DSIVIAKMDGTTNEH----HRAKSDGFPT  354 (432)
Q Consensus       280 ~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~-~~~~~~~id~~~~~~----~~~~i~~~P~  354 (432)
                      .+..++..+|++.+.+..++++|.||++||++|+.+.|.|++++..+++. +.+.|+.+||+....    .++++.++|+
T Consensus         2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt   81 (114)
T cd02992           2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPT   81 (114)
T ss_pred             CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCE
Confidence            47889999999998777789999999999999999999999999999753 359999999875332    5799999999


Q ss_pred             EEEEeCCCcccCc--eeccCC-CCHHHHHHH
Q 013976          355 ILFFPAGNKSFDP--INVDVD-RTVVALYKF  382 (432)
Q Consensus       355 i~~~~~g~~~~~~--~~y~g~-~~~~~l~~f  382 (432)
                      +++|++|... .+  ..|+|. +..+++...
T Consensus        82 ~~lf~~~~~~-~~~~~~~~~~~~~~~~~~~~  111 (114)
T cd02992          82 LRYFPPFSKE-ATDGLKQEGPERDVNELREA  111 (114)
T ss_pred             EEEECCCCcc-CCCCCcccCCccCHHHHHHH
Confidence            9999988754 23  567774 666666543

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=99.61  E-value=3e-15  Score=115.43  Aligned_cols=94  Identities=22%  Similarity=0.270  Sum_probs=77.7

Q ss_pred             cccchhhhhcC-CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc-----ccCCCCCCceEEEEe
Q 013976          286 GNNFDEIVLDE-SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----HRAKSDGFPTILFFP  359 (432)
Q Consensus       286 ~~~~~~~~~~~-~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-----~~~~i~~~P~i~~~~  359 (432)
                      .++|++.+.+. +++++|.|||+||++|+.+.|.|.+++..+ .  .+.|+.+|++++..     .+++|.++||+++|+
T Consensus         3 ~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~--~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~   79 (103)
T cd02985           3 VEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-N--DVVFLLVNGDENDSTMELCRREKIIEVPHFLFYK   79 (103)
T ss_pred             HHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-C--CCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEe
Confidence            35677777544 789999999999999999999999999999 3  59999999998742     579999999999999


Q ss_pred             CCCcccCceeccCCCCHHHHHHHHHhc
Q 013976          360 AGNKSFDPINVDVDRTVVALYKFLKKN  386 (432)
Q Consensus       360 ~g~~~~~~~~y~g~~~~~~l~~fi~~~  386 (432)
                      +|+.+.   .+.| ...+.|..-+..+
T Consensus        80 ~G~~v~---~~~G-~~~~~l~~~~~~~  102 (103)
T cd02985          80 DGEKIH---EEEG-IGPDELIGDVLYY  102 (103)
T ss_pred             CCeEEE---EEeC-CCHHHHHHHHHhc
Confidence            998764   7777 5667777766543

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=99.60  E-value=5.6e-15  Score=112.55  Aligned_cols=94  Identities=16%  Similarity=0.099  Sum_probs=83.7

Q ss_pred             eEEEecccchhhhhcCCCcEEEEEeCCC--ChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEE
Q 013976          281 VKIVVGNNFDEIVLDESKDVLLEIYAPW--CGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTIL  356 (432)
Q Consensus       281 v~~l~~~~~~~~~~~~~~~~lv~f~~~~--c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~  356 (432)
                      ...++..||++.+ +.++.++|+||++|  |++|..+.|.|.++++.+.+  .+.|+.+|++++..  .+++|.++||++
T Consensus        12 ~~~~~~~~~~~~~-~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~--~v~f~kVdid~~~~la~~f~V~sIPTli   88 (111)
T cd02965          12 WPRVDAATLDDWL-AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPG--RFRAAVVGRADEQALAARFGVLRTPALL   88 (111)
T ss_pred             CcccccccHHHHH-hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCC--cEEEEEEECCCCHHHHHHcCCCcCCEEE
Confidence            5678999999876 77799999999997  99999999999999999987  69999999999887  689999999999


Q ss_pred             EEeCCCcccCceeccCCCCHHHHH
Q 013976          357 FFPAGNKSFDPINVDVDRTVVALY  380 (432)
Q Consensus       357 ~~~~g~~~~~~~~y~g~~~~~~l~  380 (432)
                      +|++|+.+.   .+.|..+.+.+.
T Consensus        89 ~fkdGk~v~---~~~G~~~~~e~~  109 (111)
T cd02965          89 FFRDGRYVG---VLAGIRDWDEYV  109 (111)
T ss_pred             EEECCEEEE---EEeCccCHHHHh
Confidence            999998875   778877776654

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=99.60  E-value=3.9e-15  Score=114.66  Aligned_cols=95  Identities=20%  Similarity=0.425  Sum_probs=80.2

Q ss_pred             ecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc-ccCCCCCCceEEEEeCCCc
Q 013976          285 VGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-HRAKSDGFPTILFFPAGNK  363 (432)
Q Consensus       285 ~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-~~~~i~~~P~i~~~~~g~~  363 (432)
                      +.++|++.+ ..+++++|.|||+||++|+.+.|.+.+++..+++. .+.|+.+|++..+. .+++|.++|++++|++|+.
T Consensus         6 ~~~~~~~~i-~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~-~~~~~~vd~d~~~~~~~~~v~~~Pt~~~~~~g~~   83 (102)
T cd02948           6 NQEEWEELL-SNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDD-LLHFATAEADTIDTLKRYRGKCEPTFLFYKNGEL   83 (102)
T ss_pred             CHHHHHHHH-ccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCC-cEEEEEEeCCCHHHHHHcCCCcCcEEEEEECCEE
Confidence            567888865 56789999999999999999999999999999752 58999999984433 6899999999999999987


Q ss_pred             ccCceeccCCCCHHHHHHHHHh
Q 013976          364 SFDPINVDVDRTVVALYKFLKK  385 (432)
Q Consensus       364 ~~~~~~y~g~~~~~~l~~fi~~  385 (432)
                      +.   +..| .+...|.++|.+
T Consensus        84 ~~---~~~G-~~~~~~~~~i~~  101 (102)
T cd02948          84 VA---VIRG-ANAPLLNKTITE  101 (102)
T ss_pred             EE---EEec-CChHHHHHHHhh
Confidence            64   5555 588999999875

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent

Probab=99.60  E-value=4.9e-15  Score=141.56  Aligned_cols=106  Identities=30%  Similarity=0.603  Sum_probs=92.0

Q ss_pred             CCceEEEecccchhhhh--cCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc----ccCCCCC
Q 013976          278 DGDVKIVVGNNFDEIVL--DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH----HRAKSDG  351 (432)
Q Consensus       278 ~~~v~~l~~~~~~~~~~--~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~----~~~~i~~  351 (432)
                      +..|..|+..+|++.+.  +.++++||.||+|||++|+.+.|.|+++|..+++. .+.|+.+|++.+..    ..++|.+
T Consensus       350 ~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~-~v~~~kVdvD~~~~~~~~~~~~I~~  428 (463)
T TIGR00424       350 SNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGS-GVKVAKFRADGDQKEFAKQELQLGS  428 (463)
T ss_pred             CCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC-CcEEEEEECCCCccHHHHHHcCCCc
Confidence            45689999999999874  45689999999999999999999999999999863 58999999987643    4799999


Q ss_pred             CceEEEEeCCCcccCceecc-CCCCHHHHHHHHHhc
Q 013976          352 FPTILFFPAGNKSFDPINVD-VDRTVVALYKFLKKN  386 (432)
Q Consensus       352 ~P~i~~~~~g~~~~~~~~y~-g~~~~~~l~~fi~~~  386 (432)
                      +||+++|++|..  +++.|. |.++.+.|..||+..
T Consensus       429 ~PTii~Fk~g~~--~~~~Y~~g~R~~e~L~~Fv~~~  462 (463)
T TIGR00424       429 FPTILFFPKHSS--RPIKYPSEKRDVDSLMSFVNLL  462 (463)
T ss_pred             cceEEEEECCCC--CceeCCCCCCCHHHHHHHHHhh
Confidence            999999999965  677898 489999999999853

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.

>PLN02309 5'-adenylylsulfate reductase

Probab=99.60  E-value=4.9e-15  Score=141.58  Aligned_cols=106  Identities=29%  Similarity=0.610  Sum_probs=92.4

Q ss_pred             CCceEEEecccchhhhh--cCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCC-Cccc---ccCCCCC
Q 013976          278 DGDVKIVVGNNFDEIVL--DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT-TNEH---HRAKSDG  351 (432)
Q Consensus       278 ~~~v~~l~~~~~~~~~~--~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~-~~~~---~~~~i~~  351 (432)
                      ++.|..|+..+|++.+.  +.++.+||.||+|||++|+.+.|.|.+++..+.+. ++.|+.+|++ .+..   ..++|.+
T Consensus       344 ~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~-~V~f~kVD~d~~~~~la~~~~~I~~  422 (457)
T PLN02309        344 SQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGS-GVKVAKFRADGDQKEFAKQELQLGS  422 (457)
T ss_pred             CCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC-CeEEEEEECCCcchHHHHhhCCCce
Confidence            45789999999999873  56789999999999999999999999999999763 6999999999 4333   2589999


Q ss_pred             CceEEEEeCCCcccCceeccC-CCCHHHHHHHHHhc
Q 013976          352 FPTILFFPAGNKSFDPINVDV-DRTVVALYKFLKKN  386 (432)
Q Consensus       352 ~P~i~~~~~g~~~~~~~~y~g-~~~~~~l~~fi~~~  386 (432)
                      +||+++|++|..  +++.|.| .++.++|++||+..
T Consensus       423 ~PTil~f~~g~~--~~v~Y~~~~R~~~~L~~fv~~~  456 (457)
T PLN02309        423 FPTILLFPKNSS--RPIKYPSEKRDVDSLLSFVNSL  456 (457)
T ss_pred             eeEEEEEeCCCC--CeeecCCCCcCHHHHHHHHHHh
Confidence            999999999876  6889985 79999999999864

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=99.59  E-value=6e-15  Score=115.89  Aligned_cols=99  Identities=24%  Similarity=0.348  Sum_probs=81.8

Q ss_pred             CceEEEecccchhhhhcCC--CcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc-ccCCCCCCceE
Q 013976          279 GDVKIVVGNNFDEIVLDES--KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-HRAKSDGFPTI  355 (432)
Q Consensus       279 ~~v~~l~~~~~~~~~~~~~--~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-~~~~i~~~P~i  355 (432)
                      +.+..++.++|.+.+.+.+  ++++|.||+|||++|+.+.|.|++++..+.+   +.|+++|++++.. .+++|.++|++
T Consensus         4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~---v~f~~vd~~~~~l~~~~~i~~~Pt~   80 (113)
T cd02957           4 GEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPE---TKFVKINAEKAFLVNYLDIKVLPTL   80 (113)
T ss_pred             ceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC---cEEEEEEchhhHHHHhcCCCcCCEE
Confidence            5678899999999886653  8999999999999999999999999999864   8999999998733 68999999999


Q ss_pred             EEEeCCCcccCceeccC-------CCCHHHHHHHH
Q 013976          356 LFFPAGNKSFDPINVDV-------DRTVVALYKFL  383 (432)
Q Consensus       356 ~~~~~g~~~~~~~~y~g-------~~~~~~l~~fi  383 (432)
                      ++|++|+.+.   ++.|       ..+.+.|..|+
T Consensus        81 ~~f~~G~~v~---~~~G~~~~~~~~~~~~~l~~~l  112 (113)
T cd02957          81 LVYKNGELID---NIVGFEELGGDDFTTEDLEKFL  112 (113)
T ss_pred             EEEECCEEEE---EEecHHHhCCCCCCHHHHHHHh
Confidence            9999998765   4444       34455555554

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=99.59  E-value=6.3e-15  Score=120.38  Aligned_cols=94  Identities=18%  Similarity=0.409  Sum_probs=79.2

Q ss_pred             CCCCCCCCCCceEEEecccchhhhhcC-CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--cc
Q 013976          270 SDPIPETNDGDVKIVVGNNFDEIVLDE-SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HR  346 (432)
Q Consensus       270 se~~p~~~~~~v~~l~~~~~~~~~~~~-~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~  346 (432)
                      +++.+.. ...+..++.++|++.+... +++++|.||++||++|+.+.|.|+++++.+.+. ++.|+.+|++++..  .+
T Consensus        20 ~~~~~~~-~~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~-~v~f~~VDvd~~~~la~~   97 (152)
T cd02962          20 PQPLYMG-PEHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNN-NLKFGKIDIGRFPNVAEK   97 (152)
T ss_pred             CCCccCC-CCccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccC-CeEEEEEECCCCHHHHHH
Confidence            4444433 4678889999999987543 578999999999999999999999999999752 69999999999877  57


Q ss_pred             CCCCC------CceEEEEeCCCccc
Q 013976          347 AKSDG------FPTILFFPAGNKSF  365 (432)
Q Consensus       347 ~~i~~------~P~i~~~~~g~~~~  365 (432)
                      ++|.+      +||+++|++|+.+.
T Consensus        98 ~~V~~~~~v~~~PT~ilf~~Gk~v~  122 (152)
T cd02962          98 FRVSTSPLSKQLPTIILFQGGKEVA  122 (152)
T ss_pred             cCceecCCcCCCCEEEEEECCEEEE
Confidence            88887      99999999998775

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>TIGR01068 thioredoxin thioredoxin

Probab=99.58  E-value=9.5e-15  Score=112.64  Aligned_cols=98  Identities=30%  Similarity=0.562  Sum_probs=85.7

Q ss_pred             ecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEEEeCCC
Q 013976          285 VGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGN  362 (432)
Q Consensus       285 ~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~~~g~  362 (432)
                      +.++|.+.+.+.+++++|.||++||++|+.+.+.+.+++..+.+  ++.|+.+|++.+..  .++++.++|++++|++|.
T Consensus         2 ~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~   79 (101)
T TIGR01068         2 TDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEG--KVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGK   79 (101)
T ss_pred             CHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcC--CeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCc
Confidence            45678887766667999999999999999999999999998876  69999999998876  689999999999999887


Q ss_pred             cccCceeccCCCCHHHHHHHHHhcC
Q 013976          363 KSFDPINVDVDRTVVALYKFLKKNA  387 (432)
Q Consensus       363 ~~~~~~~y~g~~~~~~l~~fi~~~~  387 (432)
                      ...   .+.|..+.+.|.+||++++
T Consensus        80 ~~~---~~~g~~~~~~l~~~l~~~~  101 (101)
T TIGR01068        80 EVD---RSVGALPKAALKQLINKNL  101 (101)
T ss_pred             Eee---eecCCCCHHHHHHHHHhhC
Confidence            653   6778889999999998763

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=99.57  E-value=4.6e-14  Score=115.17  Aligned_cols=98  Identities=21%  Similarity=0.352  Sum_probs=82.2

Q ss_pred             ccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc----ccCCCCCCceEEEE-eCC
Q 013976          287 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH----HRAKSDGFPTILFF-PAG  361 (432)
Q Consensus       287 ~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~----~~~~i~~~P~i~~~-~~g  361 (432)
                      ..|++.+ ..+++++|.||++||.+|+.+.|.|.+++..+.+  .+.|+.+|++.+..    ..++|.++|++++| ++|
T Consensus        11 ~~~~~a~-~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~--~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G   87 (142)
T cd02950          11 TPPEVAL-SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGD--QVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREG   87 (142)
T ss_pred             CCHHHHH-hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhcc--CeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCC
Confidence            4566644 6678999999999999999999999999999976  57888888776532    68999999999999 467


Q ss_pred             CcccCceeccCCCCHHHHHHHHHhcCCCC
Q 013976          362 NKSFDPINVDVDRTVVALYKFLKKNASIP  390 (432)
Q Consensus       362 ~~~~~~~~y~g~~~~~~l~~fi~~~~~~~  390 (432)
                      +.+.   .+.|....+.|.++|.+.+...
T Consensus        88 ~~v~---~~~G~~~~~~l~~~l~~l~~~~  113 (142)
T cd02950          88 NEEG---QSIGLQPKQVLAQNLDALVAGE  113 (142)
T ss_pred             CEEE---EEeCCCCHHHHHHHHHHHHcCC
Confidence            7654   7889889999999999988755

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=99.57  E-value=2e-14  Score=111.26  Aligned_cols=94  Identities=27%  Similarity=0.599  Sum_probs=80.0

Q ss_pred             ccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCC-CCEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCc
Q 013976          287 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV-DSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNK  363 (432)
Q Consensus       287 ~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~-~~~~~~~id~~~~~~--~~~~i~~~P~i~~~~~g~~  363 (432)
                      ++|++.  ..++.++|.||++||++|+.+.|.|.+++..+++. ..+.++.+|++.+..  .+++|.++|++++|.+|..
T Consensus         7 ~~~~~~--~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~~~   84 (104)
T cd03000           7 DSFKDV--RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGDLA   84 (104)
T ss_pred             hhhhhh--ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCCCc
Confidence            667763  34679999999999999999999999999999652 359999999988766  6899999999999976533


Q ss_pred             ccCceeccCCCCHHHHHHHHHhc
Q 013976          364 SFDPINVDVDRTVVALYKFLKKN  386 (432)
Q Consensus       364 ~~~~~~y~g~~~~~~l~~fi~~~  386 (432)
                          ..|.|..+.+.|.+|+++.
T Consensus        85 ----~~~~G~~~~~~l~~~~~~~  103 (104)
T cd03000          85 ----YNYRGPRTKDDIVEFANRV  103 (104)
T ss_pred             ----eeecCCCCHHHHHHHHHhh
Confidence                3789999999999999875

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.55  E-value=2.1e-14  Score=109.61  Aligned_cols=85  Identities=29%  Similarity=0.544  Sum_probs=72.2

Q ss_pred             cCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCcccCceeccC
Q 013976          295 DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDV  372 (432)
Q Consensus       295 ~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~~~g~~~~~~~~y~g  372 (432)
                      ..++.++|.|||+||++|+.+.|.+.+||.+|.+   +.|.++|++++..  ..++|...||+++|++|+.+.   .+.|
T Consensus        19 ~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~---v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~~---~~vG   92 (106)
T KOG0907|consen   19 AGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD---VVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEVD---EVVG   92 (106)
T ss_pred             CCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC---CEEEEEecccCHhHHHhcCceEeeEEEEEECCEEEE---EEec
Confidence            3358999999999999999999999999999987   9999999998333  689999999999999998875   6666


Q ss_pred             CCCHHHHHHHHHhc
Q 013976          373 DRTVVALYKFLKKN  386 (432)
Q Consensus       373 ~~~~~~l~~fi~~~  386 (432)
                       .+...+.+.|.++
T Consensus        93 -a~~~~l~~~i~~~  105 (106)
T KOG0907|consen   93 -ANKAELEKKIAKH  105 (106)
T ss_pred             -CCHHHHHHHHHhc
Confidence             4555777777654

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=99.55  E-value=2.8e-14  Score=111.62  Aligned_cols=101  Identities=23%  Similarity=0.313  Sum_probs=81.5

Q ss_pred             CceEEEec-ccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceE
Q 013976          279 GDVKIVVG-NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTI  355 (432)
Q Consensus       279 ~~v~~l~~-~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i  355 (432)
                      |.+..++. .+|.+.+ ..++.++|.||++||++|+.+.|.|.++++.+.+   +.|+++|++++..  .+++|.++|++
T Consensus         4 g~v~~i~~~~~~~~~i-~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~---i~f~~Vd~~~~~~l~~~~~v~~vPt~   79 (113)
T cd02989           4 GKYREVSDEKEFFEIV-KSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE---TKFIKVNAEKAPFLVEKLNIKVLPTV   79 (113)
T ss_pred             CCeEEeCCHHHHHHHH-hCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC---CEEEEEEcccCHHHHHHCCCccCCEE
Confidence            45777777 8888877 4568999999999999999999999999998854   8999999999876  78999999999


Q ss_pred             EEEeCCCcccCcee---cc--CCCCHHHHHHHH
Q 013976          356 LFFPAGNKSFDPIN---VD--VDRTVVALYKFL  383 (432)
Q Consensus       356 ~~~~~g~~~~~~~~---y~--g~~~~~~l~~fi  383 (432)
                      ++|++|+.+.+...   ..  +..+.+++..||
T Consensus        80 l~fk~G~~v~~~~g~~~~~~~~~~~~~~~e~~~  112 (113)
T cd02989          80 ILFKNGKTVDRIVGFEELGGKDDFSTETLEKRL  112 (113)
T ss_pred             EEEECCEEEEEEECccccCCCCCCCHHHHHHHh
Confidence            99999987641111   11  245667776665

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.54  E-value=2.8e-14  Score=109.86  Aligned_cols=98  Identities=49%  Similarity=0.933  Sum_probs=83.1

Q ss_pred             EEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEEEeC
Q 013976          283 IVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPA  360 (432)
Q Consensus       283 ~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~~~  360 (432)
                      .++.++|.+.+.+ +++++|+||++||++|+.+.+.|.+++..++....+.|+.+|++.+..  ..++|.++|++++|++
T Consensus         2 ~l~~~~~~~~i~~-~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~   80 (101)
T cd02961           2 ELTDDNFDELVKD-SKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPN   80 (101)
T ss_pred             cccHHHHHHHHhC-CCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcC
Confidence            3667788887744 449999999999999999999999999999633479999999998655  7899999999999988


Q ss_pred             CCcccCceeccCCCCHHHHHHHH
Q 013976          361 GNKSFDPINVDVDRTVVALYKFL  383 (432)
Q Consensus       361 g~~~~~~~~y~g~~~~~~l~~fi  383 (432)
                      |..  ...+|.|..+.+.|.+|+
T Consensus        81 ~~~--~~~~~~g~~~~~~i~~~~  101 (101)
T cd02961          81 GSK--EPVKYEGPRTLESLVEFI  101 (101)
T ss_pred             CCc--ccccCCCCcCHHHHHhhC
Confidence            742  455899999999999885

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=99.52  E-value=6.4e-14  Score=118.09  Aligned_cols=130  Identities=19%  Similarity=0.297  Sum_probs=98.6

Q ss_pred             HHHHHHHhcCCcCccccCCCCCCCCCCceEEEec-ccchhhhhcCC--CcEEEEEeCCCChhhhhhHHHHHHHHHHhcCC
Q 013976          253 KTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVG-NNFDEIVLDES--KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV  329 (432)
Q Consensus       253 ~~fi~~~~~g~l~~~~~se~~p~~~~~~v~~l~~-~~~~~~~~~~~--~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~  329 (432)
                      ..|++.|...++....+..+ -...-+.+..++. .+|.+.+...+  .+++|.||++||++|+.+.|.|.+||..+.  
T Consensus        37 e~~l~~~R~~R~~el~~~~~-~~~~~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~--  113 (175)
T cd02987          37 EEFLQQYREQRMQEMHAKLP-FGRRFGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP--  113 (175)
T ss_pred             HHHHHHHHHHHHHHHHHhcc-ccCCCCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC--
Confidence            45777776655543322110 1122577889998 99999886544  489999999999999999999999999985  


Q ss_pred             CCEEEEEEeCCCccc-ccCCCCCCceEEEEeCCCcccCceecc---C-CCCHHHHHHHHHhc
Q 013976          330 DSIVIAKMDGTTNEH-HRAKSDGFPTILFFPAGNKSFDPINVD---V-DRTVVALYKFLKKN  386 (432)
Q Consensus       330 ~~~~~~~id~~~~~~-~~~~i~~~P~i~~~~~g~~~~~~~~y~---g-~~~~~~l~~fi~~~  386 (432)
                       .+.|++||++.+.. ..+.|.++||+++|++|+.+.+.+.+.   | ..+.+.|..||.++
T Consensus       114 -~vkF~kVd~d~~~l~~~f~v~~vPTlllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~~  174 (175)
T cd02987         114 -AVKFCKIRASATGASDEFDTDALPALLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVEY  174 (175)
T ss_pred             -CeEEEEEeccchhhHHhCCCCCCCEEEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHhc
Confidence             49999999998744 789999999999999998764232222   2 67888888888765

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=99.51  E-value=8e-14  Score=111.37  Aligned_cols=98  Identities=15%  Similarity=0.162  Sum_probs=81.7

Q ss_pred             cccchhhhh-cCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEE-EEeCC
Q 013976          286 GNNFDEIVL-DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTIL-FFPAG  361 (432)
Q Consensus       286 ~~~~~~~~~-~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~-~~~~g  361 (432)
                      ..+|++.+. ..++++||.|||+||++|+.+.|.+.++|..+++  .+.|+.+|++++..  ..++|.+.|++. +|++|
T Consensus        11 ~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~--~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk~g   88 (142)
T PLN00410         11 GWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKN--FAVIYLVDITEVPDFNTMYELYDPCTVMFFFRNK   88 (142)
T ss_pred             HHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCC--ceEEEEEECCCCHHHHHHcCccCCCcEEEEEECC
Confidence            477888775 3468999999999999999999999999999987  58999999999988  789999776666 88999


Q ss_pred             C-cccCceeccC--------CCCHHHHHHHHHhcCC
Q 013976          362 N-KSFDPINVDV--------DRTVVALYKFLKKNAS  388 (432)
Q Consensus       362 ~-~~~~~~~y~g--------~~~~~~l~~fi~~~~~  388 (432)
                      . .++   ...|        ..+.+.|.+-++....
T Consensus        89 ~~~vd---~~tG~~~k~~~~~~~k~~l~~~i~~~~~  121 (142)
T PLN00410         89 HIMID---LGTGNNNKINWALKDKQEFIDIVETVYR  121 (142)
T ss_pred             eEEEE---EecccccccccccCCHHHHHHHHHHHHH
Confidence            8 554   5566        4688888888887753

>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]

Probab=99.50  E-value=2.2e-14  Score=124.19  Aligned_cols=94  Identities=26%  Similarity=0.555  Sum_probs=83.7

Q ss_pred             CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCC-CCEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCcccCceeccC
Q 013976          296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV-DSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDV  372 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~-~~~~~~~id~~~~~~--~~~~i~~~P~i~~~~~g~~~~~~~~y~g  372 (432)
                      +...|+|.||||||+||+++.|+|.+++..+++. ..++++++||+..+.  .+++|++||||.+|+++..+    .|.|
T Consensus        42 dddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~a~----dYRG  117 (468)
T KOG4277|consen   42 DDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDHAI----DYRG  117 (468)
T ss_pred             cCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCCeee----ecCC
Confidence            3467999999999999999999999999999874 479999999999888  68999999999999988655    8999


Q ss_pred             CCCHHHHHHHHHhcCCCCCcc
Q 013976          373 DRTVVALYKFLKKNASIPFKI  393 (432)
Q Consensus       373 ~~~~~~l~~fi~~~~~~~~~~  393 (432)
                      .+..+.|++|...-++.-+..
T Consensus       118 ~R~Kd~iieFAhR~a~aiI~p  138 (468)
T KOG4277|consen  118 GREKDAIIEFAHRCAAAIIEP  138 (468)
T ss_pred             CccHHHHHHHHHhcccceeee
Confidence            999999999999887655443

>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=99.50  E-value=1.1e-13  Score=107.42  Aligned_cols=107  Identities=23%  Similarity=0.183  Sum_probs=96.0

Q ss_pred             eeecCCCchhhhccCCCcceEEEEEeCcchhhhHHHHHHHHHh---ccCceEEEEEecCCcccccchhhhhCCCCCCCcE
Q 013976          153 VTIFTRENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKS---FKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKV  229 (432)
Q Consensus       153 v~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~---~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~  229 (432)
                      |++++.++...++..+.+..++|| ..++...+...++++|++   ++|++.|+++|.+.+.   ..++.||++..+.|+
T Consensus         1 ~~e~t~e~~~~~~~~~~~~~~l~f-~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~---~~~~~fgl~~~~~P~   76 (111)
T cd03072           1 VREITFENAEELTEEGLPFLILFH-DKDDLESLKEFKQAVARQLISEKGAINFLTADGDKFR---HPLLHLGKTPADLPV   76 (111)
T ss_pred             CcccccccHHHHhcCCCCeEEEEe-cchHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhh---hHHHHcCCCHhHCCE
Confidence            578999999999999998888888 447788999999999999   9999999999999854   589999999878899


Q ss_pred             EEEEeCCCCceec-CCCCCCHHHHHHHHHHHhcCC
Q 013976          230 LAYTGNDDAKKHI-LDGELTLDKIKTFGEDFLEGK  263 (432)
Q Consensus       230 i~i~~~~~~~~y~-~~~~~~~~~i~~fi~~~~~g~  263 (432)
                      ++|.+.+++.+|. +.+.++.++|.+|+++++.|+
T Consensus        77 i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~Gk  111 (111)
T cd03072          77 IAIDSFRHMYLFPDFEDVYVPGKLKQFVLDLHSGK  111 (111)
T ss_pred             EEEEcchhcCcCCCCccccCHHHHHHHHHHHhcCC
Confidence            9999886667888 788999999999999999985

It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=99.49  E-value=1.2e-13  Score=105.37  Aligned_cols=90  Identities=19%  Similarity=0.400  Sum_probs=79.3

Q ss_pred             hhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCcccCc
Q 013976          290 DEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDP  367 (432)
Q Consensus       290 ~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~~~g~~~~~~  367 (432)
                      ...+.+.+++++|+||++||+.|+.+.+.+.++++.+.+  ++.++.+|++.+..  .++++.++|++++|++|+.+.  
T Consensus         6 ~~~~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~--~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~--   81 (97)
T cd02949           6 RKLYHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG--AVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVK--   81 (97)
T ss_pred             HHHHHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC--ceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEE--
Confidence            445667789999999999999999999999999999976  69999999988765  689999999999999887664  


Q ss_pred             eeccCCCCHHHHHHHHH
Q 013976          368 INVDVDRTVVALYKFLK  384 (432)
Q Consensus       368 ~~y~g~~~~~~l~~fi~  384 (432)
                       .+.|..+.+.|.+||+
T Consensus        82 -~~~g~~~~~~~~~~l~   97 (97)
T cd02949          82 -EISGVKMKSEYREFIE   97 (97)
T ss_pred             -EEeCCccHHHHHHhhC
Confidence             7889999999999874

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

Probab=99.47  E-value=1.8e-13  Score=116.85  Aligned_cols=126  Identities=18%  Similarity=0.223  Sum_probs=96.7

Q ss_pred             HHHHHhcCCcCccccCCCCCCCCCCceEEEecccchhhhhcCC--CcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCE
Q 013976          255 FGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDES--KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSI  332 (432)
Q Consensus       255 fi~~~~~g~l~~~~~se~~p~~~~~~v~~l~~~~~~~~~~~~~--~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~  332 (432)
                      |++.|...++....+...  ...-|.|..++..+|...+...+  ..|+|.||++||++|+.+.+.|.+||..+..   +
T Consensus        60 ~Le~yR~kRl~el~~~~~--~~~~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~---v  134 (192)
T cd02988          60 FLEEYRRKRLAEMKALAE--KSKFGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPD---T  134 (192)
T ss_pred             HHHHHHHHHHHHHHHhhh--hCCCCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCC---C
Confidence            777776665543322111  12357899999999998876554  4899999999999999999999999999864   8


Q ss_pred             EEEEEeCCCcccccCCCCCCceEEEEeCCCcccCceecc---C-CCCHHHHHHHHHhc
Q 013976          333 VIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVD---V-DRTVVALYKFLKKN  386 (432)
Q Consensus       333 ~~~~id~~~~~~~~~~i~~~P~i~~~~~g~~~~~~~~y~---g-~~~~~~l~~fi~~~  386 (432)
                      +|++||++.. .+.|.+.++||+++|++|..+.+.+.+.   | ..+.+.|..+|.+.
T Consensus       135 kFvkI~ad~~-~~~~~i~~lPTlliyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~~  191 (192)
T cd02988         135 KFVKIISTQC-IPNYPDKNLPTILVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQV  191 (192)
T ss_pred             EEEEEEhHHh-HhhCCCCCCCEEEEEECCEEEEEEeCchhhCCCCCCHHHHHHHHHhc
Confidence            9999999764 5789999999999999998775222221   2 56778888888754

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=99.46  E-value=2.9e-13  Score=104.84  Aligned_cols=91  Identities=23%  Similarity=0.401  Sum_probs=75.4

Q ss_pred             cchhhhhcCCCcEEEEEeCCCChhhhhhHHHH---HHHHHHhcCCCCEEEEEEeCCCccc------ccCCCCCCceEEEE
Q 013976          288 NFDEIVLDESKDVLLEIYAPWCGHCQAFEPTY---NKLAKHLRGVDSIVIAKMDGTTNEH------HRAKSDGFPTILFF  358 (432)
Q Consensus       288 ~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~---~~la~~~~~~~~~~~~~id~~~~~~------~~~~i~~~P~i~~~  358 (432)
                      .|.+.+ ..+++++|.||++||++|+.+.+.+   .+++..+.+  ++.++.+|++.+..      .++++.++|++++|
T Consensus         3 ~~~~~~-~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~   79 (104)
T cd02953           3 ALAQAL-AQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK--DVVLLRADWTKNDPEITALLKRFGVFGPPTYLFY   79 (104)
T ss_pred             HHHHHH-HcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC--CeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEE
Confidence            455544 5678999999999999999999988   678888876  79999999987532      47999999999999


Q ss_pred             eC--CCcccCceeccCCCCHHHHHHHHH
Q 013976          359 PA--GNKSFDPINVDVDRTVVALYKFLK  384 (432)
Q Consensus       359 ~~--g~~~~~~~~y~g~~~~~~l~~fi~  384 (432)
                      .+  |+.   +..+.|..+.+.|.++|+
T Consensus        80 ~~~~g~~---~~~~~G~~~~~~l~~~l~  104 (104)
T cd02953          80 GPGGEPE---PLRLPGFLTADEFLEALE  104 (104)
T ss_pred             CCCCCCC---CcccccccCHHHHHHHhC
Confidence            84  443   458899999999998874

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=99.46  E-value=2.4e-13  Score=103.97  Aligned_cols=91  Identities=23%  Similarity=0.441  Sum_probs=75.0

Q ss_pred             ccchhhhhcC-CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCc
Q 013976          287 NNFDEIVLDE-SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNK  363 (432)
Q Consensus       287 ~~~~~~~~~~-~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~~~g~~  363 (432)
                      ++|++.+... ++.++|.||++||.+|+.+.+.|++++..+..  .+.++.+|++++..  .++++.++|++++|++|+.
T Consensus         3 ~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~--~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~   80 (97)
T cd02984           3 EEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFP--SVLFLSIEAEELPEISEKFEITAVPTFVFFRNGTI   80 (97)
T ss_pred             HHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCC--ceEEEEEccccCHHHHHhcCCccccEEEEEECCEE
Confidence            5677766544 58999999999999999999999999999843  79999999987765  6899999999999998876


Q ss_pred             ccCceeccCCCCHHHHHHHH
Q 013976          364 SFDPINVDVDRTVVALYKFL  383 (432)
Q Consensus       364 ~~~~~~y~g~~~~~~l~~fi  383 (432)
                      +.   .+.| .+.+.|.+.|
T Consensus        81 ~~---~~~g-~~~~~l~~~~   96 (97)
T cd02984          81 VD---RVSG-ADPKELAKKV   96 (97)
T ss_pred             EE---EEeC-CCHHHHHHhh
Confidence            53   4455 5667777655

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=99.45  E-value=1.1e-13  Score=120.13  Aligned_cols=105  Identities=26%  Similarity=0.501  Sum_probs=91.5

Q ss_pred             ecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCC---CCEEEEEEeCCCccc--ccCCCCCCceEEEEe
Q 013976          285 VGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV---DSIVIAKMDGTTNEH--HRAKSDGFPTILFFP  359 (432)
Q Consensus       285 ~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~---~~~~~~~id~~~~~~--~~~~i~~~P~i~~~~  359 (432)
                      +..|++..+ +....++|.|||.||..++.++|+|.+.|..++..   .++.+|.+||+.++.  .+|.|..|||+.+|+
T Consensus         2 t~~N~~~il-~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfr   80 (375)
T KOG0912|consen    2 TSENIDSIL-DSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFR   80 (375)
T ss_pred             ccccHHHhh-ccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeee
Confidence            456777755 66889999999999999999999999999988742   479999999999988  799999999999999


Q ss_pred             CCCcccCceeccCCCCHHHHHHHHHhcCCCCCc
Q 013976          360 AGNKSFDPINVDVDRTVVALYKFLKKNASIPFK  392 (432)
Q Consensus       360 ~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~~~  392 (432)
                      +|....  ..|.|.++++.|.+||+++.+-+++
T Consensus        81 nG~~~~--rEYRg~RsVeaL~efi~kq~s~~i~  111 (375)
T KOG0912|consen   81 NGEMMK--REYRGQRSVEALIEFIEKQLSDPIN  111 (375)
T ss_pred             ccchhh--hhhccchhHHHHHHHHHHHhccHHH
Confidence            997642  2799999999999999999876643

>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.45  E-value=2.8e-13  Score=114.60  Aligned_cols=99  Identities=25%  Similarity=0.440  Sum_probs=85.3

Q ss_pred             cccchhhhhcC-CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEEEeCCC
Q 013976          286 GNNFDEIVLDE-SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGN  362 (432)
Q Consensus       286 ~~~~~~~~~~~-~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~~~g~  362 (432)
                      ...|...+... .+.++|.|+|.||++|+.+.|+|..|+.+|.+   ..|.++|+++...  ..++|...||+++|++|.
T Consensus         9 d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~---aVFlkVdVd~c~~taa~~gV~amPTFiff~ng~   85 (288)
T KOG0908|consen    9 DSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG---AVFLKVDVDECRGTAATNGVNAMPTFIFFRNGV   85 (288)
T ss_pred             cHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc---cEEEEEeHHHhhchhhhcCcccCceEEEEecCe
Confidence            36677766443 47999999999999999999999999999965   8999999999887  589999999999999999


Q ss_pred             cccCceeccCCCCHHHHHHHHHhcCCCCC
Q 013976          363 KSFDPINVDVDRTVVALYKFLKKNASIPF  391 (432)
Q Consensus       363 ~~~~~~~y~g~~~~~~l~~fi~~~~~~~~  391 (432)
                      +++   .+.| .++..|.+-|.++++...
T Consensus        86 kid---~~qG-Ad~~gLe~kv~~~~stsa  110 (288)
T KOG0908|consen   86 KID---QIQG-ADASGLEEKVAKYASTSA  110 (288)
T ss_pred             Eee---eecC-CCHHHHHHHHHHHhccCc
Confidence            875   6665 899999999999986443

>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1

Probab=99.44  E-value=3.6e-13  Score=102.43  Aligned_cols=76  Identities=16%  Similarity=0.180  Sum_probs=67.0

Q ss_pred             ccchhhhhc-CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCc
Q 013976          287 NNFDEIVLD-ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNK  363 (432)
Q Consensus       287 ~~~~~~~~~-~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~~~g~~  363 (432)
                      +.|++.+.+ .++.++|.|+|+||++|+.+.|.+.++|..+++  .+.|+.+|++++..  ..++|...||+++|++|+.
T Consensus         3 ~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~--~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh   80 (114)
T cd02986           3 KEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSK--MASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQH   80 (114)
T ss_pred             HHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccC--ceEEEEEeccccHHHHHhcCceeCcEEEEEECCcE
Confidence            356666654 478999999999999999999999999999975  49999999999988  7899999999999999976


Q ss_pred             c
Q 013976          364 S  364 (432)
Q Consensus       364 ~  364 (432)
                      .
T Consensus        81 ~   81 (114)
T cd02986          81 M   81 (114)
T ss_pred             E
Confidence            4

Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=99.42  E-value=7.7e-13  Score=103.55  Aligned_cols=90  Identities=12%  Similarity=0.182  Sum_probs=76.9

Q ss_pred             cCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCcccCceeccC
Q 013976          295 DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDV  372 (432)
Q Consensus       295 ~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~~~g~~~~~~~~y~g  372 (432)
                      .....++|+||++||++|+.+.|.+++++..+ +  .+.|..+|+++++.  ..++|.++|++++|++|... ..+.|.|
T Consensus        20 ~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~--~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~-~~~~~~G   95 (113)
T cd02975          20 KNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-D--KLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKD-GGIRYYG   95 (113)
T ss_pred             CCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-C--ceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeec-ceEEEEe
Confidence            34567899999999999999999999999876 3  59999999998776  68999999999999988665 4567999


Q ss_pred             CCCHHHHHHHHHhcCC
Q 013976          373 DRTVVALYKFLKKNAS  388 (432)
Q Consensus       373 ~~~~~~l~~fi~~~~~  388 (432)
                      ..+...+.+||...+.
T Consensus        96 ~~~~~el~~~i~~i~~  111 (113)
T cd02975          96 LPAGYEFASLIEDIVR  111 (113)
T ss_pred             cCchHHHHHHHHHHHh
Confidence            8889999999987643

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []

Probab=99.42  E-value=3.5e-10  Score=100.92  Aligned_cols=310  Identities=15%  Similarity=0.171  Sum_probs=195.7

Q ss_pred             ceeeCCHHHHHHHhhcCCeEEEEEecCCCcc--hHHH------HHH-Hhc--cCCCceEEEeC---cHHHHhHcCCCCCC
Q 013976           48 IYNITTLDEAERVLTSETKVVLGYLNSLVGS--ESEV------LAD-ASR--LEDDVNFYQTT---NPDVAKIFHLDSKV  113 (432)
Q Consensus        48 ~~~i~~~~~l~~~~~~~~~~vv~f~~~~~~~--~~~~------f~~-~a~--~~~~~~F~~~~---~~~~~~~~~~~~~~  113 (432)
                      +..| +...+++.++..++.+|.|+.+..+.  ..+.      +.+ +|+  -...+.||.++   +..+++++|+..  
T Consensus        36 Vi~L-neKNfk~~lKkyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv~E--  112 (383)
T PF01216_consen   36 VIDL-NEKNFKRALKKYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGVEE--  112 (383)
T ss_dssp             CEEE--TTTHHHHHHH-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT--S--
T ss_pred             eEEc-chhHHHHHHHhhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCccc--
Confidence            5666 57889999999999999998665443  2222      334 443  34678999854   668999999987  


Q ss_pred             CCCeEEEEecCCCceecccCCCCCHHHHHHHHHhcCCCceeecCCCchhhhccC-C-CcceEEEEEeCcchhhhHHHHHH
Q 013976          114 NRPALVMVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFES-P-IKNQLLLFAVSNDSEKLLPVFEE  191 (432)
Q Consensus       114 ~~p~i~l~~~~~~~~~~y~~g~~~~~~l~~fi~~~~~p~v~~l~~~~~~~~~~~-~-~~~~i~~~~~~~~~~~~~~~~~~  191 (432)
                       .++|.+|+  ++..+.| +|.++++.|..||..-.-..|..++.+.-.+.+.. . ...+|-+|.+ .... ....|.+
T Consensus       113 -~~SiyVfk--d~~~IEy-dG~~saDtLVeFl~dl~edPVeiIn~~~e~~~Fe~ied~~klIGyFk~-~~s~-~yk~Fee  186 (383)
T PF01216_consen  113 -EGSIYVFK--DGEVIEY-DGERSADTLVEFLLDLLEDPVEIINNKHELKAFERIEDDIKLIGYFKS-EDSE-HYKEFEE  186 (383)
T ss_dssp             -TTEEEEEE--TTEEEEE--S--SHHHHHHHHHHHHSSSEEEE-SHHHHHHHHH--SS-EEEEE-SS-TTSH-HHHHHHH
T ss_pred             -cCcEEEEE--CCcEEEe-cCccCHHHHHHHHHHhcccchhhhcChhhhhhhhhcccceeEEEEeCC-CCcH-HHHHHHH
Confidence             59999999  4678899 99999999999999888777888888665443332 2 2334444533 3233 3456899


Q ss_pred             HHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCceecC-CCCCCHHHHHHHHHHHhcCCcCccccC
Q 013976          192 AAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHIL-DGELTLDKIKTFGEDFLEGKLKPFFKS  270 (432)
Q Consensus       192 ~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~-~~~~~~~~i~~fi~~~~~g~l~~~~~s  270 (432)
                      +|..|+..|.|..+=      .+.+++.++++-   --+-++.+=...+... ....+.+.|.+||++...         
T Consensus       187 AAe~F~p~IkFfAtf------d~~vAk~L~lK~---nev~fyepF~~~pi~ip~~p~~e~e~~~fi~~h~r---------  248 (383)
T PF01216_consen  187 AAEHFQPYIKFFATF------DKKVAKKLGLKL---NEVDFYEPFMDEPITIPGKPYTEEELVEFIEEHKR---------  248 (383)
T ss_dssp             HHHHCTTTSEEEEE-------SHHHHHHHT-ST---T-EEEE-TTSSSEEEESSSS--HHHHHHHHHHT-S---------
T ss_pred             HHHhhcCceeEEEEe------cchhhhhcCccc---cceeeeccccCCCccCCCCCCCHHHHHHHHHHhch---------
Confidence            999999988877642      457899999963   3444443322233333 335789999999999653         


Q ss_pred             CCCCCCCCCceEEEecccchhhhhcC-CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc-----
Q 013976          271 DPIPETNDGDVKIVVGNNFDEIVLDE-SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----  344 (432)
Q Consensus       271 e~~p~~~~~~v~~l~~~~~~~~~~~~-~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-----  344 (432)
                              ..+++|+..++-+...++ ++..+|-|.-.-...-.++..++.++|+...+++++.++.||-+.-+.     
T Consensus       249 --------ptlrkl~~~~m~e~Wedd~~g~hIvaFaee~dpdG~efleilk~va~~nt~np~LsivwIDPD~fPllv~yW  320 (383)
T PF01216_consen  249 --------PTLRKLRPEDMFETWEDDIDGIHIVAFAEEEDPDGFEFLEILKQVARDNTDNPDLSIVWIDPDDFPLLVPYW  320 (383)
T ss_dssp             ---------SEEE--GGGHHHHHHSSSSSEEEEEE--TTSHHHHHHHHHHHHHHHHCTT-TT--EEEE-GGG-HHHHHHH
T ss_pred             --------hHhhhCChhhhhhhhcccCCCceEEEEecCCCCchHHHHHHHHHHHHhcCcCCceeEEEECCCCCchhHHHH
Confidence                    236778888877766554 467888887777778889999999999999988899999999887766     


Q ss_pred             -ccCCCC-CCceEEEEeCCCcccCceecc-----CCCCHHHHHHHHHhcCCCCCccc
Q 013976          345 -HRAKSD-GFPTILFFPAGNKSFDPINVD-----VDRTVVALYKFLKKNASIPFKIQ  394 (432)
Q Consensus       345 -~~~~i~-~~P~i~~~~~g~~~~~~~~y~-----g~~~~~~l~~fi~~~~~~~~~~~  394 (432)
                       ..|+|. .-|.|-+..-....  .+=+.     ...+++.|..||.+..+.++...
T Consensus       321 E~tF~Idl~~PqIGvVnvtdad--svW~dm~d~~d~pt~~~LedWieDVlsg~i~~e  375 (383)
T PF01216_consen  321 EKTFGIDLSRPQIGVVNVTDAD--SVWMDMDDDDDLPTAEELEDWIEDVLSGKINTE  375 (383)
T ss_dssp             HHHHTT-TTS-EEEEEETTTSE--EEEC-STTTSS---HHHHHHHHHHHHCTCCTB-
T ss_pred             HhhcCccccCCceeEEeccccc--cchhccCCcccCCcHHHHHHHHHHHhcCCCCCc
Confidence             234444 23999888554431  11121     14589999999999998776554

It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.

>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds

Probab=99.41  E-value=2.4e-12  Score=99.17  Aligned_cols=95  Identities=21%  Similarity=0.363  Sum_probs=85.2

Q ss_pred             ceeeCCHHHHHHHhhcCCeEEEEEecCCCcchHHHHHHHh-ccCCCceEEEeCcHHHHhHcCCCCCCCCCeEEEEe----
Q 013976           48 IYNITTLDEAERVLTSETKVVLGYLNSLVGSESEVLADAS-RLEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVK----  122 (432)
Q Consensus        48 ~~~i~~~~~l~~~~~~~~~~vv~f~~~~~~~~~~~f~~~a-~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~i~l~~----  122 (432)
                      ++.|++.+++++|+...+++|||||.+.+.+.++.|.++| .+|+++.|+++.++++++.+++ .    |++++||    
T Consensus         2 ~~~i~s~~~l~~f~~~~~~~Vvg~f~~~~~~~~~~F~~vA~~~R~d~~F~~~~~~~~~~~~~~-~----~~ivl~~p~~~   76 (104)
T cd03069           2 SVELRTEAEFEKFLSDDDASVVGFFEDEDSKLLSEFLKAADTLRESFRFAHTSDKQLLEKYGY-G----EGVVLFRPPRL   76 (104)
T ss_pred             ccccCCHHHHHHHhccCCcEEEEEEcCCCchHHHHHHHHHHhhhhcCEEEEEChHHHHHhcCC-C----CceEEEechhh
Confidence            5688899999999999999999999998889999999999 7789999999999999999988 5    8899994    


Q ss_pred             --cCCCceecccCCCCCHHHHHHHHHhc
Q 013976          123 --KETEKISYFADGKFDKSTIADFVFSN  148 (432)
Q Consensus       123 --~~~~~~~~y~~g~~~~~~l~~fi~~~  148 (432)
                        ..++....| .|+++.++|..||..+
T Consensus        77 ~~k~de~~~~y-~g~~~~~~l~~fi~~~  103 (104)
T cd03069          77 SNKFEDSSVKF-DGDLDSSKIKKFIREN  103 (104)
T ss_pred             hcccCcccccc-cCcCCHHHHHHHHHhh
Confidence              456777789 9999999999999875

It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.

>PTZ00051 thioredoxin; Provisional

Probab=99.41  E-value=9.4e-13  Score=100.82  Aligned_cols=92  Identities=26%  Similarity=0.491  Sum_probs=73.6

Q ss_pred             eEEEec-ccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEE
Q 013976          281 VKIVVG-NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILF  357 (432)
Q Consensus       281 v~~l~~-~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~  357 (432)
                      +..++. ++|.+. .+.++.++|.||++||.+|+.+.+.|.+++..+.   ++.|+.+|++.+..  .++++.++|++++
T Consensus         2 v~~i~~~~~~~~~-~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~---~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~   77 (98)
T PTZ00051          2 VHIVTSQAEFEST-LSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYT---KMVFVKVDVDELSEVAEKENITSMPTFKV   77 (98)
T ss_pred             eEEecCHHHHHHH-HhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC---CcEEEEEECcchHHHHHHCCCceeeEEEE
Confidence            344444 556664 4677899999999999999999999999999765   48999999997765  6899999999999


Q ss_pred             EeCCCcccCceeccCCCCHHHHH
Q 013976          358 FPAGNKSFDPINVDVDRTVVALY  380 (432)
Q Consensus       358 ~~~g~~~~~~~~y~g~~~~~~l~  380 (432)
                      |++|+.+.   .+.|. ..+.|.
T Consensus        78 ~~~g~~~~---~~~G~-~~~~~~   96 (98)
T PTZ00051         78 FKNGSVVD---TLLGA-NDEALK   96 (98)
T ss_pred             EeCCeEEE---EEeCC-CHHHhh
Confidence            99998764   66663 445443

>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=99.40  E-value=3.7e-12  Score=97.79  Aligned_cols=99  Identities=18%  Similarity=0.268  Sum_probs=87.5

Q ss_pred             CceeeCCHHHHHHHhh-cCCeEEEEEecCCCcchHHHHHHHh-ccCCCceEEEeCcHHHHhHcCCCCCCCCCeEEEEecC
Q 013976           47 GIYNITTLDEAERVLT-SETKVVLGYLNSLVGSESEVLADAS-RLEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKE  124 (432)
Q Consensus        47 ~~~~i~~~~~l~~~~~-~~~~~vv~f~~~~~~~~~~~f~~~a-~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~i~l~~~~  124 (432)
                      +++.|++.++++.|++ .++++|||||.+.+.+.++.|.++| .+|+++.|+++.++++...+++..    |++++++..
T Consensus         1 ~v~~i~~~~~~e~~~~~~~~~~Vvg~f~~~~~~~~~~F~~vA~~~R~d~~F~~~~~~~~~~~~~~~~----~~i~l~~~~   76 (102)
T cd03066           1 PVEIINSERELQAFENIEDDIKLIGYFKSEDSEHYKAFEEAAEEFHPYIKFFATFDSKVAKKLGLKM----NEVDFYEPF   76 (102)
T ss_pred             CceEcCCHHHHHHHhcccCCeEEEEEECCCCCHHHHHHHHHHHhhhcCCEEEEECcHHHHHHcCCCC----CcEEEeCCC
Confidence            3678899999999999 8999999999999999999999999 678999999999999999998875    999999887


Q ss_pred             CCceecccCCCCCHHHHHHHHHhcC
Q 013976          125 TEKISYFADGKFDKSTIADFVFSNK  149 (432)
Q Consensus       125 ~~~~~~y~~g~~~~~~l~~fi~~~~  149 (432)
                      ++....|..|.++.+.|..||..+.
T Consensus        77 ~e~~~~y~~g~~~~~~l~~fi~~~~  101 (102)
T cd03066          77 MEEPVTIPDKPYSEEELVDFVEEHK  101 (102)
T ss_pred             CCCCcccCCCCCCHHHHHHHHHHhc
Confidence            7777778456789999999998753

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca

>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A

Probab=99.39  E-value=2.4e-11  Score=104.67  Aligned_cols=172  Identities=22%  Similarity=0.310  Sum_probs=137.2

Q ss_pred             hhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCceecCCCC-CCHHHHHHHHHHHhcC
Q 013976          184 KLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGE-LTLDKIKTFGEDFLEG  262 (432)
Q Consensus       184 ~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~-~~~~~i~~fi~~~~~g  262 (432)
                      .....|.++|..+.+.+.|+.+.      ...+++.+|+..   |+++++.....++..|.|. ++.+.|.+||....- 
T Consensus         7 ~~~~~f~~~A~~~~~~~~F~~~~------~~~~~~~~~~~~---p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~-   76 (184)
T PF13848_consen    7 ELFEIFEEAAEKLKGDYQFGVTF------NEELAKKYGIKE---PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSF-   76 (184)
T ss_dssp             HHHHHHHHHHHHHTTTSEEEEEE-------HHHHHHCTCSS---SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSS-
T ss_pred             HHHHHHHHHHHhCcCCcEEEEEc------HHHHHHHhCCCC---CcEEEeccCCCCceecccccCCHHHHHHHHHHhcc-
Confidence            45678999999999889999987      236788888865   8898887766667788887 899999999999653 


Q ss_pred             CcCccccCCCCCCCCCCceEEEecccchhhhhcCCCc-EEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCC
Q 013976          263 KLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKD-VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT  341 (432)
Q Consensus       263 ~l~~~~~se~~p~~~~~~v~~l~~~~~~~~~~~~~~~-~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~  341 (432)
                                      +.+..++..++..+. ..+.+ ++++|..........+...+..+|+.+++  ++.|+.+|++.
T Consensus        77 ----------------P~v~~~t~~n~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~~f~~~d~~~  137 (184)
T PF13848_consen   77 ----------------PLVPELTPENFEKLF-SSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKG--KINFVYVDADD  137 (184)
T ss_dssp             ----------------TSCEEESTTHHHHHH-STSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTT--TSEEEEEETTT
T ss_pred             ----------------ccccccchhhHHHHh-cCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCC--eEEEEEeehHH
Confidence                            347889999999976 44444 78888777788889999999999999987  79999999996


Q ss_pred             ccc--ccCCCC--CCceEEEEeCCCcccCceeccCCCCHHHHHHHHHh
Q 013976          342 NEH--HRAKSD--GFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKK  385 (432)
Q Consensus       342 ~~~--~~~~i~--~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~  385 (432)
                      ...  ..++++  .+|+++++...... ....+.|..+.++|.+||++
T Consensus       138 ~~~~~~~~~i~~~~~P~~vi~~~~~~~-~~~~~~~~~~~~~i~~Fl~d  184 (184)
T PF13848_consen  138 FPRLLKYFGIDEDDLPALVIFDSNKGK-YYYLPEGEITPESIEKFLND  184 (184)
T ss_dssp             THHHHHHTTTTTSSSSEEEEEETTTSE-EEE--SSCGCHHHHHHHHHH
T ss_pred             hHHHHHHcCCCCccCCEEEEEECCCCc-EEcCCCCCCCHHHHHHHhcC
Confidence            555  567777  89999999743332 22234789999999999974

...

>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.39  E-value=4.8e-12  Score=96.62  Aligned_cols=96  Identities=25%  Similarity=0.472  Sum_probs=86.1

Q ss_pred             ceeeCCHHHHHHHhhcCCeEEEEEecCCCcchHHHHHHHh-ccCCCceEEEeCcHHHHhHcCCCCCCCCCeEEEEecCCC
Q 013976           48 IYNITTLDEAERVLTSETKVVLGYLNSLVGSESEVLADAS-RLEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETE  126 (432)
Q Consensus        48 ~~~i~~~~~l~~~~~~~~~~vv~f~~~~~~~~~~~f~~~a-~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~i~l~~~~~~  126 (432)
                      +..|++.++++.++...+++|||||.+.+++.+..|.++| .+++++.|+++++.++++++++..    |++++||+.++
T Consensus         1 ~~~i~s~~~l~~~~~~~~~~vvg~f~~~~~~~~~~f~~~A~~~r~~~~F~~~~~~~~~~~~~~~~----~~i~l~~~~~~   76 (97)
T cd02981           1 VKELTSKEELEKFLDKDDVVVVGFFKDEESEEYKTFEKVAESLRDDYGFGHTSDKEVAKKLKVKP----GSVVLFKPFEE   76 (97)
T ss_pred             CeecCCHHHHHHHhccCCeEEEEEECCCCcHHHHHHHHHHHhcccCCeEEEEChHHHHHHcCCCC----CceEEeCCccc
Confidence            3578899999999999999999999998889999999999 677899999999999999988765    89999998877


Q ss_pred             ceecccCCCCCHHHHHHHHHhc
Q 013976          127 KISYFADGKFDKSTIADFVFSN  148 (432)
Q Consensus       127 ~~~~y~~g~~~~~~l~~fi~~~  148 (432)
                      ....| .|..+.++|.+||..+
T Consensus        77 ~~~~y-~g~~~~~~l~~fi~~~   97 (97)
T cd02981          77 EPVEY-DGEFTEESLVEFIKDN   97 (97)
T ss_pred             CCccC-CCCCCHHHHHHHHHhC
Confidence            78889 9999999999999753

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.38  E-value=3.1e-12  Score=98.47  Aligned_cols=100  Identities=14%  Similarity=0.184  Sum_probs=88.2

Q ss_pred             CceeecCCCchhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcE
Q 013976          151 PLVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKV  229 (432)
Q Consensus       151 p~v~~l~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~  229 (432)
                      |-+.+++.++|......+.++++.||++| ++|+.+.+.|.++|+++++.+.|+.+||++   ++.+++.+++..+  |+
T Consensus         1 ~~~~~l~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~---~~~~~~~~~v~~~--Pt   75 (101)
T cd03003           1 PEIVTLDRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGD---DRMLCRSQGVNSY--PS   75 (101)
T ss_pred             CCeEEcCHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCc---cHHHHHHcCCCcc--CE
Confidence            45778999999998888878899999999 999999999999999999999999999998   5689999999988  99


Q ss_pred             EEEEeCCCCceecCCCCCCHHHHHHHH
Q 013976          230 LAYTGNDDAKKHILDGELTLDKIKTFG  256 (432)
Q Consensus       230 i~i~~~~~~~~y~~~~~~~~~~i~~fi  256 (432)
                      ++++..+. ....+.|..+.+.|.+|.
T Consensus        76 ~~~~~~g~-~~~~~~G~~~~~~l~~f~  101 (101)
T cd03003          76 LYVFPSGM-NPEKYYGDRSKESLVKFA  101 (101)
T ss_pred             EEEEcCCC-CcccCCCCCCHHHHHhhC
Confidence            99886553 456788999999998873

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=99.36  E-value=3.5e-12  Score=100.92  Aligned_cols=96  Identities=18%  Similarity=0.181  Sum_probs=75.9

Q ss_pred             eEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc-------------cc-
Q 013976          281 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-------------HR-  346 (432)
Q Consensus       281 v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-------------~~-  346 (432)
                      +..++..+|.+.+ .+++.++|+|+++||++|+.+.|.+.++++..    ++.++.+|++.+..             .. 
T Consensus         8 ~~~it~~~~~~~i-~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~----~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~   82 (122)
T TIGR01295         8 LEVTTVVRALEAL-DKKETATFFIGRKTCPYCRKFSGTLSGVVAQT----KAPIYYIDSENNGSFEMSSLNDLTAFRSRF   82 (122)
T ss_pred             ceecCHHHHHHHH-HcCCcEEEEEECCCChhHHHHhHHHHHHHHhc----CCcEEEEECCCccCcCcccHHHHHHHHHHc
Confidence            4556777788866 55778999999999999999999999999982    46688888775431             22 


Q ss_pred             ---CCCCCCceEEEEeCCCcccCceeccC-CCCHHHHHHHHH
Q 013976          347 ---AKSDGFPTILFFPAGNKSFDPINVDV-DRTVVALYKFLK  384 (432)
Q Consensus       347 ---~~i~~~P~i~~~~~g~~~~~~~~y~g-~~~~~~l~~fi~  384 (432)
                         .++.++||+++|++|+.+.   ...| ..+.+.|.+|+.
T Consensus        83 ~i~~~i~~~PT~v~~k~Gk~v~---~~~G~~~~~~~l~~~~~  121 (122)
T TIGR01295        83 GIPTSFMGTPTFVHITDGKQVS---VRCGSSTTAQELQDIAA  121 (122)
T ss_pred             CCcccCCCCCEEEEEeCCeEEE---EEeCCCCCHHHHHHHhh
Confidence               3566799999999999875   6777 667999999874

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.35  E-value=4e-12  Score=98.44  Aligned_cols=101  Identities=22%  Similarity=0.253  Sum_probs=87.6

Q ss_pred             CceeecCCCchhhhc-cCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCc
Q 013976          151 PLVTIFTRENAPSVF-ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPK  228 (432)
Q Consensus       151 p~v~~l~~~~~~~~~-~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P  228 (432)
                      |.+.+++.+++...+ +.+.++++.||++| +.|+.+.+.|.+++.++.+.+.|+.+||+.   ++.+++.++|.++  |
T Consensus         1 ~~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~---~~~~~~~~~i~~~--P   75 (104)
T cd03004           1 PSVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQK---YESLCQQANIRAY--P   75 (104)
T ss_pred             CcceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCc---hHHHHHHcCCCcc--c
Confidence            457788999998865 44567788899999 999999999999999999899999999998   5689999999998  9


Q ss_pred             EEEEEeCCCCceecCCCCCC-HHHHHHHH
Q 013976          229 VLAYTGNDDAKKHILDGELT-LDKIKTFG  256 (432)
Q Consensus       229 ~i~i~~~~~~~~y~~~~~~~-~~~i~~fi  256 (432)
                      +++++..++...+.+.|..+ .++|.+||
T Consensus        76 t~~~~~~g~~~~~~~~G~~~~~~~l~~~i  104 (104)
T cd03004          76 TIRLYPGNASKYHSYNGWHRDADSILEFI  104 (104)
T ss_pred             EEEEEcCCCCCceEccCCCCCHHHHHhhC
Confidence            99999877556778899887 99999885

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=99.34  E-value=6e-12  Score=94.94  Aligned_cols=89  Identities=30%  Similarity=0.600  Sum_probs=75.6

Q ss_pred             cchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCccc
Q 013976          288 NFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSF  365 (432)
Q Consensus       288 ~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~~~g~~~~  365 (432)
                      +|...+ ...++++|+||++||..|..+.+.+.+++.. .  .++.++.+|++.+..  ..+++.++|++++|++|..+.
T Consensus         2 ~~~~~~-~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~--~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~   77 (93)
T cd02947           2 EFEELI-KSAKPVVVDFWAPWCGPCKAIAPVLEELAEE-Y--PKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEVD   77 (93)
T ss_pred             chHHHH-hcCCcEEEEEECCCChhHHHhhHHHHHHHHH-C--CCceEEEEECCCChhHHHhcCcccccEEEEEECCEEEE
Confidence            456655 3348999999999999999999999999988 3  369999999998665  689999999999999987554


Q ss_pred             CceeccCCCCHHHHHHHH
Q 013976          366 DPINVDVDRTVVALYKFL  383 (432)
Q Consensus       366 ~~~~y~g~~~~~~l~~fi  383 (432)
                         .+.|..+.+.|.+||
T Consensus        78 ---~~~g~~~~~~l~~~i   92 (93)
T cd02947          78 ---RVVGADPKEELEEFL   92 (93)
T ss_pred             ---EEecCCCHHHHHHHh
Confidence               778888889998887

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.33  E-value=7.5e-12  Score=96.74  Aligned_cols=84  Identities=17%  Similarity=0.273  Sum_probs=73.5

Q ss_pred             CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCC--CCceEEEEeC--CCcccCceec
Q 013976          297 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSD--GFPTILFFPA--GNKSFDPINV  370 (432)
Q Consensus       297 ~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~--~~P~i~~~~~--g~~~~~~~~y  370 (432)
                      ++++++.|+++||++|+.+.+.+.++|+.+++  ++.|+.+|++++..  ..+++.  ++|++++++.  |.+.    .+
T Consensus        12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~--~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~----~~   85 (103)
T cd02982          12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKG--KLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKY----LM   85 (103)
T ss_pred             CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCC--eEEEEEEchHhhHHHHHHcCCChhhCCEEEEEeccccccc----CC
Confidence            58999999999999999999999999999997  69999999999766  689999  9999999988  5443    34


Q ss_pred             cC-CCCHHHHHHHHHhc
Q 013976          371 DV-DRTVVALYKFLKKN  386 (432)
Q Consensus       371 ~g-~~~~~~l~~fi~~~  386 (432)
                      .+ ..+.++|.+||.+.
T Consensus        86 ~~~~~~~~~l~~fi~~~  102 (103)
T cd02982          86 PEEELTAESLEEFVEDF  102 (103)
T ss_pred             CccccCHHHHHHHHHhh
Confidence            44 45999999999875

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds

Probab=99.33  E-value=1.7e-11  Score=94.53  Aligned_cols=97  Identities=19%  Similarity=0.304  Sum_probs=84.8

Q ss_pred             CceeeCCHHHHHHHhhcC-CeEEEEEecCCCcchHHHHHHHh-ccCCCceEEEeCcHHHHhHcCCCCCCCCCeEEEE---
Q 013976           47 GIYNITTLDEAERVLTSE-TKVVLGYLNSLVGSESEVLADAS-RLEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMV---  121 (432)
Q Consensus        47 ~~~~i~~~~~l~~~~~~~-~~~vv~f~~~~~~~~~~~f~~~a-~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~i~l~---  121 (432)
                      +++.|.+.++++.++... +++|||||.+.+...++.|.++| .+|+++.|+++++.++.+.+++..    |.+++|   
T Consensus         1 ~v~~i~s~~ele~f~~~~~~~~VVG~F~~~~~~~~~~F~~vA~~~Rdd~~F~~t~~~~~~~~~~~~~----~~vvl~rp~   76 (107)
T cd03068           1 PSKQLQTLKQVQEFLRDGDDVIIIGVFSGEEDPAYQLYQDAANSLREDYKFHHTFDSEIFKSLKVSP----GQLVVFQPE   76 (107)
T ss_pred             CceEcCCHHHHHHHHhcCCCEEEEEEECCCCCHHHHHHHHHHHhcccCCEEEEEChHHHHHhcCCCC----CceEEECcH
Confidence            467899999999999887 99999999998888999999999 788999999999999999998875    889999   


Q ss_pred             ---ecCCCceecccCCC-CCHHH-HHHHHHhc
Q 013976          122 ---KKETEKISYFADGK-FDKST-IADFVFSN  148 (432)
Q Consensus       122 ---~~~~~~~~~y~~g~-~~~~~-l~~fi~~~  148 (432)
                         +..++....| .|. .+.++ |.+||+.+
T Consensus        77 ~~~~k~e~~~~~~-~~~~~~~~~~~~~f~~~~  107 (107)
T cd03068          77 KFQSKYEPKSHVL-NKKDSTSEDELKDFFKEH  107 (107)
T ss_pred             HHhhhcCcceeee-eccccchHHHHHHHHhcC
Confidence               4566788899 877 67766 99999864

It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.

>PTZ00062 glutaredoxin; Provisional

Probab=99.32  E-value=7.5e-12  Score=107.11  Aligned_cols=91  Identities=9%  Similarity=0.138  Sum_probs=77.4

Q ss_pred             cccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCcccccCCCCCCceEEEEeCCCccc
Q 013976          286 GNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSF  365 (432)
Q Consensus       286 ~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~~~~~i~~~P~i~~~~~g~~~~  365 (432)
                      .++|.+.+..+.+.++++|||+||++|+.+.+++.+|++.+.+   +.|++||++      ++|.++|++++|++|+.++
T Consensus         6 ~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~---~~F~~V~~d------~~V~~vPtfv~~~~g~~i~   76 (204)
T PTZ00062          6 KEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPS---LEFYVVNLA------DANNEYGVFEFYQNSQLIN   76 (204)
T ss_pred             HHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCC---cEEEEEccc------cCcccceEEEEEECCEEEe
Confidence            3566666644457899999999999999999999999999854   999999987      9999999999999999886


Q ss_pred             CceeccCCCCHHHHHHHHHhcCCC
Q 013976          366 DPINVDVDRTVVALYKFLKKNASI  389 (432)
Q Consensus       366 ~~~~y~g~~~~~~l~~fi~~~~~~  389 (432)
                         ++.| .+...|.+++..+.+.
T Consensus        77 ---r~~G-~~~~~~~~~~~~~~~~   96 (204)
T PTZ00062         77 ---SLEG-CNTSTLVSFIRGWAQK   96 (204)
T ss_pred             ---eeeC-CCHHHHHHHHHHHcCC
Confidence               6776 5688888888887764

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=99.32  E-value=9.4e-12  Score=96.68  Aligned_cols=101  Identities=12%  Similarity=0.039  Sum_probs=86.8

Q ss_pred             CCceeecCCCchhhh---ccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchh-hhhCCCC
Q 013976          150 LPLVTIFTRENAPSV---FESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVS-EYFGITG  224 (432)
Q Consensus       150 ~p~v~~l~~~~~~~~---~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~-~~~~i~~  224 (432)
                      .+.|.+++.++|+..   ...+..+++.||++| ++|+.+.+.++++|+++++.+.|+.|||+.   +..+| +.|+|.+
T Consensus         8 ~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~---~~~l~~~~~~I~~   84 (113)
T cd03006           8 RSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWW---PQGKCRKQKHFFY   84 (113)
T ss_pred             CCCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCC---ChHHHHHhcCCcc
Confidence            355889999999875   567778899999999 999999999999999999999999999997   45788 5899999


Q ss_pred             CCCcEEEEEeCCCCceecCCCCCCHHHHHHHH
Q 013976          225 EAPKVLAYTGNDDAKKHILDGELTLDKIKTFG  256 (432)
Q Consensus       225 ~~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi  256 (432)
                      +  |++.++.++. ....|.|..+.+.|..|+
T Consensus        85 ~--PTl~lf~~g~-~~~~y~G~~~~~~i~~~~  113 (113)
T cd03006          85 F--PVIHLYYRSR-GPIEYKGPMRAPYMEKFV  113 (113)
T ss_pred             c--CEEEEEECCc-cceEEeCCCCHHHHHhhC
Confidence            8  9999996554 456788999999998873

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=99.32  E-value=8.3e-12  Score=96.47  Aligned_cols=101  Identities=19%  Similarity=0.322  Sum_probs=89.1

Q ss_pred             eeecCCCchhhhccC-CCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEE
Q 013976          153 VTIFTRENAPSVFES-PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVL  230 (432)
Q Consensus       153 v~~l~~~~~~~~~~~-~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i  230 (432)
                      |..++.+++...+.. +.+++++||++| +.|+.+.+.|.+++..+.+.+.|+.+|+..   ++.+++.|+++..  |++
T Consensus         1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~---~~~l~~~~~v~~~--Pt~   75 (103)
T PF00085_consen    1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDE---NKELCKKYGVKSV--PTI   75 (103)
T ss_dssp             SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTT---SHHHHHHTTCSSS--SEE
T ss_pred             CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhc---cchhhhccCCCCC--CEE
Confidence            467899999998876 778888899999 999999999999999999889999999997   6789999999998  999


Q ss_pred             EEEeCCCCceecCCCCCCHHHHHHHHHHH
Q 013976          231 AYTGNDDAKKHILDGELTLDKIKTFGEDF  259 (432)
Q Consensus       231 ~i~~~~~~~~y~~~~~~~~~~i~~fi~~~  259 (432)
                      +++.+++. ...+.|.++.++|.+||++.
T Consensus        76 ~~~~~g~~-~~~~~g~~~~~~l~~~i~~~  103 (103)
T PF00085_consen   76 IFFKNGKE-VKRYNGPRNAESLIEFIEKH  103 (103)
T ss_dssp             EEEETTEE-EEEEESSSSHHHHHHHHHHH
T ss_pred             EEEECCcE-EEEEECCCCHHHHHHHHHcC
Confidence            99977653 33778999999999999863

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.30  E-value=1.2e-11  Score=95.67  Aligned_cols=97  Identities=38%  Similarity=0.501  Sum_probs=79.5

Q ss_pred             hhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCc
Q 013976          161 APSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAK  239 (432)
Q Consensus       161 ~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~  239 (432)
                      +..+...+.+++++|+++| ++|+.+.+.++++|+++++++.|+++|+++   ++.+++.||+.....|+++++...++.
T Consensus         5 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~---~~~~~~~~~i~~~~~P~~~~~~~~~~~   81 (103)
T cd02982           5 FFNYEESGKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADD---FGRHLEYFGLKEEDLPVIAIINLSDGK   81 (103)
T ss_pred             HhhhhhcCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHh---hHHHHHHcCCChhhCCEEEEEeccccc
Confidence            3333344567778888888 799999999999999999999999999998   568999999994456999999886556


Q ss_pred             eecCCCC-CCHHHHHHHHHHHh
Q 013976          240 KHILDGE-LTLDKIKTFGEDFL  260 (432)
Q Consensus       240 ~y~~~~~-~~~~~i~~fi~~~~  260 (432)
                      +|.+.+. ++.++|.+|+++++
T Consensus        82 k~~~~~~~~~~~~l~~fi~~~~  103 (103)
T cd02982          82 KYLMPEEELTAESLEEFVEDFL  103 (103)
T ss_pred             ccCCCccccCHHHHHHHHHhhC
Confidence            7777554 59999999999863

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=99.29  E-value=1.4e-11  Score=96.02  Aligned_cols=100  Identities=23%  Similarity=0.298  Sum_probs=86.4

Q ss_pred             ceeecCCCchhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhcc------CceEEEEEecCCcccccchhhhhCCCC
Q 013976          152 LVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFK------GKLIFVYVQMDNEDVGKPVSEYFGITG  224 (432)
Q Consensus       152 ~v~~l~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~------~~i~f~~vd~~~~~~~~~l~~~~~i~~  224 (432)
                      .+.+++.+++...+..+..++|.||++| ++|+.+.+.|.++|..++      +++.|+.+||+.   ++.+++.||+++
T Consensus         2 ~v~~l~~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~---~~~l~~~~~v~~   78 (108)
T cd02996           2 EIVSLTSGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDK---ESDIADRYRINK   78 (108)
T ss_pred             ceEEcCHhhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCC---CHHHHHhCCCCc
Confidence            3678899999998888877888999999 999999999999999864      258999999998   568999999999


Q ss_pred             CCCcEEEEEeCCCCceecCCCCCCHHHHHHHH
Q 013976          225 EAPKVLAYTGNDDAKKHILDGELTLDKIKTFG  256 (432)
Q Consensus       225 ~~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi  256 (432)
                      +  |++.++.+++.....+.|..+.+.|.+||
T Consensus        79 ~--Ptl~~~~~g~~~~~~~~g~~~~~~l~~fi  108 (108)
T cd02996          79 Y--PTLKLFRNGMMMKREYRGQRSVEALAEFV  108 (108)
T ss_pred             C--CEEEEEeCCcCcceecCCCCCHHHHHhhC
Confidence            8  99998876653456788999999999985

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=99.26  E-value=3.2e-10  Score=99.78  Aligned_cols=181  Identities=7%  Similarity=0.087  Sum_probs=130.4

Q ss_pred             CCeEEEEEec---CCCcc---hHHHHHHHhccCCCce--EEEe---CcHHHHhHcCCCCCCCCCeEEEEecCCCceeccc
Q 013976           64 ETKVVLGYLN---SLVGS---ESEVLADASRLEDDVN--FYQT---TNPDVAKIFHLDSKVNRPALVMVKKETEKISYFA  132 (432)
Q Consensus        64 ~~~~vv~f~~---~~~~~---~~~~f~~~a~~~~~~~--F~~~---~~~~~~~~~~~~~~~~~p~i~l~~~~~~~~~~y~  132 (432)
                      +.+.++.|+.   +.|++   ....+.++++..+.+.  ++.+   .++++++.|++..   .|++++|+.+......| 
T Consensus        19 ~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~---~Pt~~~f~~g~~~~~~~-   94 (215)
T TIGR02187        19 NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVER---VPTTIILEEGKDGGIRY-   94 (215)
T ss_pred             CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCc---cCEEEEEeCCeeeEEEE-
Confidence            4555666766   44433   5556677774444443  4444   4789999999987   69999999754323467 


Q ss_pred             CCCCCHHHHHHHHHhcC--CCceeecCCCchhhhccCCCcceEE-EEEeC-cchhhhHHHHHHHHHhccCceEEEEEecC
Q 013976          133 DGKFDKSTIADFVFSNK--LPLVTIFTRENAPSVFESPIKNQLL-LFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMD  208 (432)
Q Consensus       133 ~g~~~~~~l~~fi~~~~--~p~v~~l~~~~~~~~~~~~~~~~i~-~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~  208 (432)
                      .|..+.+.|..||....  .+.-..+++++...+-....+..|. |+++| +.|+.+.+.+++++.+. +++.+..+|.+
T Consensus        95 ~G~~~~~~l~~~i~~~~~~~~~~~~L~~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~-~~i~~~~vD~~  173 (215)
T TIGR02187        95 TGIPAGYEFAALIEDIVRVSQGEPGLSEKTVELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALAN-DKILGEMIEAN  173 (215)
T ss_pred             eecCCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhc-CceEEEEEeCC
Confidence            88888888999987652  2233455555555554445555555 77899 99999999999999884 56999999998


Q ss_pred             CcccccchhhhhCCCCCCCcEEEEEeCCCCceecCCCCCCHHHHHHHHHH
Q 013976          209 NEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGED  258 (432)
Q Consensus       209 ~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~  258 (432)
                      .   .+.++..+|+...  |+++++..+  ..  +.|..+.+.+.+|+.+
T Consensus       174 ~---~~~~~~~~~V~~v--Ptl~i~~~~--~~--~~G~~~~~~l~~~l~~  214 (215)
T TIGR02187       174 E---NPDLAEKYGVMSV--PKIVINKGV--EE--FVGAYPEEQFLEYILS  214 (215)
T ss_pred             C---CHHHHHHhCCccC--CEEEEecCC--EE--EECCCCHHHHHHHHHh
Confidence            7   5689999999988  999887433  22  6788888999999875

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=99.25  E-value=4.1e-11  Score=92.61  Aligned_cols=99  Identities=19%  Similarity=0.213  Sum_probs=85.7

Q ss_pred             eeecCCCchhhhccCC-CcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEE
Q 013976          153 VTIFTRENAPSVFESP-IKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVL  230 (432)
Q Consensus       153 v~~l~~~~~~~~~~~~-~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i  230 (432)
                      +.+++.+++...+..+ .+++++||++| +.|+.+.+.|.+++.++.+.+.|+.+|++.   +..+++.|++.+.  |++
T Consensus         2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~---~~~~~~~~~i~~~--P~~   76 (103)
T cd03001           2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADV---HQSLAQQYGVRGF--PTI   76 (103)
T ss_pred             eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcc---hHHHHHHCCCCcc--CEE
Confidence            5678888888876444 34788899999 999999999999999999999999999998   5689999999887  999


Q ss_pred             EEEeCCCCceecCCCCCCHHHHHHHH
Q 013976          231 AYTGNDDAKKHILDGELTLDKIKTFG  256 (432)
Q Consensus       231 ~i~~~~~~~~y~~~~~~~~~~i~~fi  256 (432)
                      +++.++....+.|.|..+.++|.+|+
T Consensus        77 ~~~~~~~~~~~~~~g~~~~~~l~~~~  102 (103)
T cd03001          77 KVFGAGKNSPQDYQGGRTAKAIVSAA  102 (103)
T ss_pred             EEECCCCcceeecCCCCCHHHHHHHh
Confidence            99987755677899999999999997

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=99.24  E-value=1.3e-10  Score=92.85  Aligned_cols=112  Identities=18%  Similarity=0.218  Sum_probs=87.9

Q ss_pred             CceeecCCCchhhhccCCCcceEEEEEeC------cchhhhHHHHHHHHHhccCc-eEEEEEecCCcccccchhhhhCCC
Q 013976          151 PLVTIFTRENAPSVFESPIKNQLLLFAVS------NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNEDVGKPVSEYFGIT  223 (432)
Q Consensus       151 p~v~~l~~~~~~~~~~~~~~~~i~~~~~~------~~~~~~~~~~~~~a~~~~~~-i~f~~vd~~~~~~~~~l~~~~~i~  223 (432)
                      |-+.+++.++...-......+=++.|.+.      .....+...++++|++|+++ +.|+++|....   ..+.+.||+.
T Consensus         2 ~~~~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~---~~~~~~fgl~   78 (130)
T cd02983           2 PEIIELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQ---LDLEEALNIG   78 (130)
T ss_pred             CceEEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCccc---HHHHHHcCCC
Confidence            44677777665332222234445555553      34567899999999999999 99999999984   4689999998


Q ss_pred             CCCCcEEEEEeCCCCceec-CCCCCCHHHHHHHHHHHhcCCcCc
Q 013976          224 GEAPKVLAYTGNDDAKKHI-LDGELTLDKIKTFGEDFLEGKLKP  266 (432)
Q Consensus       224 ~~~~P~i~i~~~~~~~~y~-~~~~~~~~~i~~fi~~~~~g~l~~  266 (432)
                      +...|++++++.+++ +|. +.|+++.++|.+|+++++.|++..
T Consensus        79 ~~~~P~v~i~~~~~~-KY~~~~~~~t~e~i~~Fv~~~l~Gkl~~  121 (130)
T cd02983          79 GFGYPAMVAINFRKM-KFATLKGSFSEDGINEFLRELSYGRGPT  121 (130)
T ss_pred             ccCCCEEEEEecccC-ccccccCccCHHHHHHHHHHHHcCCccc
Confidence            777899999988765 887 789999999999999999999854

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=99.23  E-value=3.6e-11  Score=96.39  Aligned_cols=90  Identities=14%  Similarity=0.248  Sum_probs=72.7

Q ss_pred             cCC-CcEEEEEeCCCChhhhhhHHHHH---HHHHHhcCCCCEEEEEEeCCCcc--------------c-ccCCCCCCceE
Q 013976          295 DES-KDVLLEIYAPWCGHCQAFEPTYN---KLAKHLRGVDSIVIAKMDGTTNE--------------H-HRAKSDGFPTI  355 (432)
Q Consensus       295 ~~~-~~~lv~f~~~~c~~c~~~~~~~~---~la~~~~~~~~~~~~~id~~~~~--------------~-~~~~i~~~P~i  355 (432)
                      +.+ ++++|+||++||++|+.+.+.+.   .+...+++  ++.++.+|++.+.              . ..+++.++|++
T Consensus        11 ~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~--~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~   88 (125)
T cd02951          11 ADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA--HFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFTPTV   88 (125)
T ss_pred             HcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh--heEEEEEEccCCceeeccCCCCccHHHHHHHcCCccccEE
Confidence            556 89999999999999999999885   56666765  6899999988641              1 57899999999


Q ss_pred             EEEeCC--CcccCceeccCCCCHHHHHHHHHhcCCC
Q 013976          356 LFFPAG--NKSFDPINVDVDRTVVALYKFLKKNASI  389 (432)
Q Consensus       356 ~~~~~g--~~~~~~~~y~g~~~~~~l~~fi~~~~~~  389 (432)
                      ++|.++  +.+   .++.|..+.+.+.++|++..+.
T Consensus        89 ~~~~~~gg~~~---~~~~G~~~~~~~~~~l~~~~~~  121 (125)
T cd02951          89 IFLDPEGGKEI---ARLPGYLPPDEFLAYLEYVQEK  121 (125)
T ss_pred             EEEcCCCCcee---EEecCCCCHHHHHHHHHHHHhh
Confidence            999764  443   3788888899999999887654

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=99.22  E-value=7.2e-11  Score=92.24  Aligned_cols=102  Identities=22%  Similarity=0.281  Sum_probs=87.2

Q ss_pred             eeecCCCchhhhcc-CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEE
Q 013976          153 VTIFTRENAPSVFE-SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVL  230 (432)
Q Consensus       153 v~~l~~~~~~~~~~-~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i  230 (432)
                      +.+++.+++...+. .+.++++.||++| +.|+.+.+.+.++|+.+.+.+.|+.+|++... +..+++.|++.++  |++
T Consensus         2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~-~~~~~~~~~i~~~--Pt~   78 (109)
T cd03002           2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDK-NKPLCGKYGVQGF--PTL   78 (109)
T ss_pred             eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccc-cHHHHHHcCCCcC--CEE
Confidence            56889999988754 4555788899999 99999999999999999998999999999854 5689999999998  999


Q ss_pred             EEEeCCC----CceecCCCCCCHHHHHHHHH
Q 013976          231 AYTGNDD----AKKHILDGELTLDKIKTFGE  257 (432)
Q Consensus       231 ~i~~~~~----~~~y~~~~~~~~~~i~~fi~  257 (432)
                      +++..++    ...+.|.|..+.++|.+||.
T Consensus        79 ~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi~  109 (109)
T cd03002          79 KVFRPPKKASKHAVEDYNGERSAKAIVDFVL  109 (109)
T ss_pred             EEEeCCCcccccccccccCccCHHHHHHHhC
Confidence            9998775    24567889999999999973

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=99.22  E-value=2.5e-11  Score=95.46  Aligned_cols=93  Identities=24%  Similarity=0.482  Sum_probs=64.8

Q ss_pred             hcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc-ccCCCCC--CceEEEE-eCCCcccCcee
Q 013976          294 LDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-HRAKSDG--FPTILFF-PAGNKSFDPIN  369 (432)
Q Consensus       294 ~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-~~~~i~~--~P~i~~~-~~g~~~~~~~~  369 (432)
                      ...+++++|.|||+||++|+.+.|.+.+++.......++..+.+|.+.... ..+++.+  +|++++| ++|+.+.+.+.
T Consensus        16 ~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~~~~~~~   95 (117)
T cd02959          16 KDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDVHPEIIN   95 (117)
T ss_pred             HHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCCchhhcc
Confidence            356789999999999999999999999987765432244444444333222 5677775  9999999 57777643445


Q ss_pred             ccCCCCHHHHHHHHHhc
Q 013976          370 VDVDRTVVALYKFLKKN  386 (432)
Q Consensus       370 y~g~~~~~~l~~fi~~~  386 (432)
                      ..|..+.....++|...
T Consensus        96 ~~~~~~~~~f~~~~~~~  112 (117)
T cd02959          96 KKGNPNYKYFYSSAAQV  112 (117)
T ss_pred             CCCCccccccCCCHHHH
Confidence            66666666655555544

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=99.21  E-value=9e-11  Score=86.50  Aligned_cols=78  Identities=18%  Similarity=0.238  Sum_probs=67.5

Q ss_pred             EEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCcccCceeccCCCCHH
Q 013976          300 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVV  377 (432)
Q Consensus       300 ~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~~~g~~~~~~~~y~g~~~~~  377 (432)
                      .+..||++||++|+.+.+.+++++..++.  .+.+..+|++++..  .++++.++|++++  +|. .    .+.|..+.+
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~-~----~~~G~~~~~   72 (82)
T TIGR00411         2 KIELFTSPTCPYCPAAKRVVEEVAKEMGD--AVEVEYINVMENPQKAMEYGIMAVPAIVI--NGD-V----EFIGAPTKE   72 (82)
T ss_pred             EEEEEECCCCcchHHHHHHHHHHHHHhcC--ceEEEEEeCccCHHHHHHcCCccCCEEEE--CCE-E----EEecCCCHH
Confidence            46789999999999999999999999976  59999999987766  6899999999986  554 2    788988999


Q ss_pred             HHHHHHHhc
Q 013976          378 ALYKFLKKN  386 (432)
Q Consensus       378 ~l~~fi~~~  386 (432)
                      .|.++|.+.
T Consensus        73 ~l~~~l~~~   81 (82)
T TIGR00411        73 ELVEAIKKR   81 (82)
T ss_pred             HHHHHHHhh
Confidence            999998764

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=99.20  E-value=6.7e-11  Score=92.15  Aligned_cols=77  Identities=21%  Similarity=0.378  Sum_probs=63.7

Q ss_pred             cccchhhhhcC-CCcEEEEEeC-------CCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCcc-------c--ccCC
Q 013976          286 GNNFDEIVLDE-SKDVLLEIYA-------PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE-------H--HRAK  348 (432)
Q Consensus       286 ~~~~~~~~~~~-~~~~lv~f~~-------~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~-------~--~~~~  348 (432)
                      .++|.+.+.+. +++++|.|||       +||++|+.+.|.+++++..+.+  ++.|++||++.+.       .  ..+.
T Consensus         9 ~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~--~v~fv~Vdvd~~~~w~d~~~~~~~~~~   86 (119)
T cd02952           9 YEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPE--DCVFIYCDVGDRPYWRDPNNPFRTDPK   86 (119)
T ss_pred             HHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCC--CCEEEEEEcCCcccccCcchhhHhccC
Confidence            36677766543 5799999999       9999999999999999999985  5999999998642       2  5678


Q ss_pred             CC-CCceEEEEeCCCcc
Q 013976          349 SD-GFPTILFFPAGNKS  364 (432)
Q Consensus       349 i~-~~P~i~~~~~g~~~  364 (432)
                      |. ++||+++|+.|.++
T Consensus        87 I~~~iPT~~~~~~~~~l  103 (119)
T cd02952          87 LTTGVPTLLRWKTPQRL  103 (119)
T ss_pred             cccCCCEEEEEcCCcee
Confidence            88 99999999877543

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=99.19  E-value=9.8e-11  Score=91.59  Aligned_cols=102  Identities=19%  Similarity=0.196  Sum_probs=86.7

Q ss_pred             ceeecCCCchhhhccCCCcceEEEEEeC--c--chh--hhHHHHHHHHHhc--cCceEEEEEecCCcccccchhhhhCCC
Q 013976          152 LVTIFTRENAPSVFESPIKNQLLLFAVS--N--DSE--KLLPVFEEAAKSF--KGKLIFVYVQMDNEDVGKPVSEYFGIT  223 (432)
Q Consensus       152 ~v~~l~~~~~~~~~~~~~~~~i~~~~~~--~--~~~--~~~~~~~~~a~~~--~~~i~f~~vd~~~~~~~~~l~~~~~i~  223 (432)
                      .+..++.+||...+..+...++++|.+|  +  +|+  .+.+.+.++|.++  .+++.|+.||++.   ++.+++.|||+
T Consensus        10 ~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~---~~~La~~~~I~   86 (120)
T cd03065          10 RVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKK---DAKVAKKLGLD   86 (120)
T ss_pred             ceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCC---CHHHHHHcCCc
Confidence            4778899999988877777777777776  4  499  7788999999999  7889999999998   67999999999


Q ss_pred             CCCCcEEEEEeCCCCceecCCCCCCHHHHHHHHHHHh
Q 013976          224 GEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFL  260 (432)
Q Consensus       224 ~~~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~  260 (432)
                      +.  |+++++.+++  ...+.|.++.+.|.+|+++.+
T Consensus        87 ~i--PTl~lfk~G~--~v~~~G~~~~~~l~~~l~~~~  119 (120)
T cd03065          87 EE--DSIYVFKDDE--VIEYDGEFAADTLVEFLLDLI  119 (120)
T ss_pred             cc--cEEEEEECCE--EEEeeCCCCHHHHHHHHHHHh
Confidence            98  9999997664  334889999999999999864

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI

Probab=99.18  E-value=9e-11  Score=90.88  Aligned_cols=102  Identities=23%  Similarity=0.292  Sum_probs=82.9

Q ss_pred             eeecCCCchhhhccCCCcceEEEEEe----C-cchhhhHHHHHHHHHhcc-CceEEEEEecCCcccccchhhhhCCCCCC
Q 013976          153 VTIFTRENAPSVFESPIKNQLLLFAV----S-NDSEKLLPVFEEAAKSFK-GKLIFVYVQMDNEDVGKPVSEYFGITGEA  226 (432)
Q Consensus       153 v~~l~~~~~~~~~~~~~~~~i~~~~~----~-~~~~~~~~~~~~~a~~~~-~~i~f~~vd~~~~~~~~~l~~~~~i~~~~  226 (432)
                      |.+++.+|...++..  +.++.+|.-    . .+.+.+...+.++|++|+ +++.|+++|..++   ...++.||++...
T Consensus         1 v~~~~~en~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~---~~~l~~fgl~~~~   75 (111)
T cd03073           1 VGHRTKDNRAQFTKK--PLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDRKLNFAVADKEDF---SHELEEFGLDFSG   75 (111)
T ss_pred             CCeeccchHHHhccC--CeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHH---HHHHHHcCCCccc
Confidence            467889999888643  334444432    3 567889999999999999 7999999999984   3578999999766


Q ss_pred             --CcEEEEEeCCCCceecCCCCC-CHHHHHHHHHHHh
Q 013976          227 --PKVLAYTGNDDAKKHILDGEL-TLDKIKTFGEDFL  260 (432)
Q Consensus       227 --~P~i~i~~~~~~~~y~~~~~~-~~~~i~~fi~~~~  260 (432)
                        .|+++|.+.++ .+|.+.+++ +.++|.+|+++|+
T Consensus        76 ~~~P~~~i~~~~~-~KY~~~~~~~t~e~i~~F~~~f~  111 (111)
T cd03073          76 GEKPVVAIRTAKG-KKYVMEEEFSDVDALEEFLEDFF  111 (111)
T ss_pred             CCCCEEEEEeCCC-CccCCCcccCCHHHHHHHHHHhC
Confidence              89999987654 789988889 9999999999874

They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei

>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells

Probab=99.18  E-value=1.2e-10  Score=89.78  Aligned_cols=103  Identities=15%  Similarity=0.123  Sum_probs=79.8

Q ss_pred             eeecCCCchhhhccCCCcceEEEEEeCcchhhhHHHHHHHHHhcc---CceEEEEEecCCcc--cccchhhhhCCC--CC
Q 013976          153 VTIFTRENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFK---GKLIFVYVQMDNED--VGKPVSEYFGIT--GE  225 (432)
Q Consensus       153 v~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~~~---~~i~f~~vd~~~~~--~~~~l~~~~~i~--~~  225 (432)
                      +..|++.||+.++..+...++.||++|+-|.+ .+.++++|.++.   +.|.++.|||+++.  -+.+||+.|||+  ++
T Consensus         3 ~v~L~~~nF~~~v~~~~~vlV~F~A~~Pwc~k-~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I~~~gy   81 (116)
T cd03007           3 CVDLDTVTFYKVIPKFKYSLVKFDTAYPYGEK-HEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYKLDKESY   81 (116)
T ss_pred             eeECChhhHHHHHhcCCcEEEEEeCCCCCCCC-hHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhCCCcCCC
Confidence            56799999999999888888999995544444 366666666663   24999999995411  046899999999  77


Q ss_pred             CCcEEEEEeCCC-CceecCCCC-CCHHHHHHHHHH
Q 013976          226 APKVLAYTGNDD-AKKHILDGE-LTLDKIKTFGED  258 (432)
Q Consensus       226 ~~P~i~i~~~~~-~~~y~~~~~-~~~~~i~~fi~~  258 (432)
                        |+|.++.++. .....|.|. ++.+.|.+||..
T Consensus        82 --PTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~  114 (116)
T cd03007          82 --PVIYLFHGGDFENPVPYSGADVTVDALQRFLKG  114 (116)
T ss_pred             --CEEEEEeCCCcCCCccCCCCcccHHHHHHHHHh
Confidence              9999998763 345678996 999999999976

It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=99.16  E-value=1.4e-10  Score=90.36  Aligned_cols=100  Identities=13%  Similarity=0.195  Sum_probs=84.2

Q ss_pred             eeecCCCchhhhcc---CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCc-eEEEEEecCCcccccchhh-hhCCCCCC
Q 013976          153 VTIFTRENAPSVFE---SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNEDVGKPVSE-YFGITGEA  226 (432)
Q Consensus       153 v~~l~~~~~~~~~~---~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~-i~f~~vd~~~~~~~~~l~~-~~~i~~~~  226 (432)
                      |.+++.+++..+..   .++++++.||++| ++|+.+.+.|.++|..+++. +.++.+|++..  ...++. .+++..+ 
T Consensus         3 v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~--~~~~~~~~~~v~~~-   79 (109)
T cd02993           3 VVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGE--QREFAKEELQLKSF-   79 (109)
T ss_pred             ceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCcc--chhhHHhhcCCCcC-
Confidence            67889999988763   4678889999999 99999999999999999974 99999999873  246675 5899888 


Q ss_pred             CcEEEEEeCCCCceecCCCC-CCHHHHHHHH
Q 013976          227 PKVLAYTGNDDAKKHILDGE-LTLDKIKTFG  256 (432)
Q Consensus       227 ~P~i~i~~~~~~~~y~~~~~-~~~~~i~~fi  256 (432)
                       |++.++..+....+.|.|. ++.++|..||
T Consensus        80 -Pti~~f~~~~~~~~~y~g~~~~~~~l~~f~  109 (109)
T cd02993          80 -PTILFFPKNSRQPIKYPSEQRDVDSLLMFV  109 (109)
T ss_pred             -CEEEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence             9999998776677888885 8999999885

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=99.15  E-value=1.8e-10  Score=88.75  Aligned_cols=98  Identities=20%  Similarity=0.317  Sum_probs=85.3

Q ss_pred             cCCCchhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccC--ceEEEEEecCCcccccchhhhhCCCCCCCcEEEE
Q 013976          156 FTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG--KLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAY  232 (432)
Q Consensus       156 l~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~--~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i  232 (432)
                      ++++++...+..+.+.+++|+++| +.|+.+.+.+.++|..+.+  .+.|+.+|++.   .+.+++.|++...  |++++
T Consensus         1 l~~~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~~~i~~~--P~~~~   75 (102)
T TIGR01126         1 LTASNFDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATA---EKDLASRFGVSGF--PTIKF   75 (102)
T ss_pred             CchhhHHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccc---hHHHHHhCCCCcC--CEEEE
Confidence            456777777777777889999999 9999999999999999987  69999999988   5689999999887  99998


Q ss_pred             EeCCCCceecCCCCCCHHHHHHHHHHH
Q 013976          233 TGNDDAKKHILDGELTLDKIKTFGEDF  259 (432)
Q Consensus       233 ~~~~~~~~y~~~~~~~~~~i~~fi~~~  259 (432)
                      +..++. .+.+.|..+.+.|..||+++
T Consensus        76 ~~~~~~-~~~~~g~~~~~~l~~~i~~~  101 (102)
T TIGR01126        76 FPKGKK-PVDYEGGRDLEAIVEFVNEK  101 (102)
T ss_pred             ecCCCc-ceeecCCCCHHHHHHHHHhc
Confidence            877754 77889999999999999874

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.12  E-value=3.1e-10  Score=89.93  Aligned_cols=106  Identities=18%  Similarity=0.273  Sum_probs=91.3

Q ss_pred             CCceeecCCCchhh-hccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCC
Q 013976          150 LPLVTIFTRENAPS-VFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAP  227 (432)
Q Consensus       150 ~p~v~~l~~~~~~~-~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~  227 (432)
                      .+.+..++...++. +.++..|+++.|++.| ++|+.+.+.+++++.+|.|++.|+.+|.++   +.++...|+|+..  
T Consensus        42 ~~~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~---~~ela~~Y~I~av--  116 (150)
T KOG0910|consen   42 ATLFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDE---HPELAEDYEISAV--  116 (150)
T ss_pred             cccccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEcccc---ccchHhhcceeee--
Confidence            44666777777765 5677788899999999 999999999999999999999999999998   5699999999988  


Q ss_pred             cEEEEEeCCCCceecCCCCCCHHHHHHHHHHHhc
Q 013976          228 KVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  261 (432)
Q Consensus       228 P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  261 (432)
                      |+++++.++. +.-.+.|..+.+.+.+||++++.
T Consensus       117 PtvlvfknGe-~~d~~vG~~~~~~l~~~i~k~l~  149 (150)
T KOG0910|consen  117 PTVLVFKNGE-KVDRFVGAVPKEQLRSLIKKFLK  149 (150)
T ss_pred             eEEEEEECCE-EeeeecccCCHHHHHHHHHHHhc
Confidence            9999997764 33457788999999999999874

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=99.11  E-value=5.1e-10  Score=86.05  Aligned_cols=98  Identities=18%  Similarity=0.150  Sum_probs=83.3

Q ss_pred             ceeecCCCchhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccC-ceEEEEEecCCcccccchhhhhCCCCCCCcE
Q 013976          152 LVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNEDVGKPVSEYFGITGEAPKV  229 (432)
Q Consensus       152 ~v~~l~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~-~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~  229 (432)
                      .|.+++.++|..++..  .+++.||++| ++|+.+.+.|.+++..+++ .+.|+.+|+++   ++.+++.|++..+  |+
T Consensus         2 ~v~~l~~~~f~~~~~~--~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~---~~~~~~~~~i~~~--Pt   74 (101)
T cd02994           2 NVVELTDSNWTLVLEG--EWMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQ---EPGLSGRFFVTAL--PT   74 (101)
T ss_pred             ceEEcChhhHHHHhCC--CEEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccC---CHhHHHHcCCccc--CE
Confidence            3678999999987753  3789999999 9999999999999998875 59999999987   5688999999998  99


Q ss_pred             EEEEeCCCCceecCCCCCCHHHHHHHHHH
Q 013976          230 LAYTGNDDAKKHILDGELTLDKIKTFGED  258 (432)
Q Consensus       230 i~i~~~~~~~~y~~~~~~~~~~i~~fi~~  258 (432)
                      ++++..+  ....+.|..+.++|.+|+++
T Consensus        75 ~~~~~~g--~~~~~~G~~~~~~l~~~i~~  101 (101)
T cd02994          75 IYHAKDG--VFRRYQGPRDKEDLISFIEE  101 (101)
T ss_pred             EEEeCCC--CEEEecCCCCHHHHHHHHhC
Confidence            9887544  34677899999999999864

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=99.10  E-value=3.2e-10  Score=87.40  Aligned_cols=97  Identities=22%  Similarity=0.311  Sum_probs=83.4

Q ss_pred             eeecCCCchhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccC---ceEEEEEecCCcccccchhhhhCCCCCCCc
Q 013976          153 VTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG---KLIFVYVQMDNEDVGKPVSEYFGITGEAPK  228 (432)
Q Consensus       153 v~~l~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~---~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P  228 (432)
                      +.+++.+++...+..+ ++++.||++| ++|+.+.+.+.+++.++++   .+.|+.+|++.   ...+++.|++...  |
T Consensus         2 ~~~l~~~~f~~~~~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~---~~~~~~~~~v~~~--P   75 (102)
T cd03005           2 VLELTEDNFDHHIAEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQ---HRELCSEFQVRGY--P   75 (102)
T ss_pred             eeECCHHHHHHHhhcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCC---ChhhHhhcCCCcC--C
Confidence            5678889998887766 5888899999 9999999999999999987   79999999998   4588999999887  9


Q ss_pred             EEEEEeCCCCceecCCCCCCHHHHHHHH
Q 013976          229 VLAYTGNDDAKKHILDGELTLDKIKTFG  256 (432)
Q Consensus       229 ~i~i~~~~~~~~y~~~~~~~~~~i~~fi  256 (432)
                      +++++.++. ....+.|..+.+.|.+||
T Consensus        76 t~~~~~~g~-~~~~~~G~~~~~~l~~~i  102 (102)
T cd03005          76 TLLLFKDGE-KVDKYKGTRDLDSLKEFV  102 (102)
T ss_pred             EEEEEeCCC-eeeEeeCCCCHHHHHhhC
Confidence            999886554 556788999999998885

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=99.10  E-value=1.1e-10  Score=110.78  Aligned_cols=115  Identities=27%  Similarity=0.516  Sum_probs=91.7

Q ss_pred             CCCCceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCC-CCEEEEEEeCCCccc----ccCCCC
Q 013976          276 TNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV-DSIVIAKMDGTTNEH----HRAKSD  350 (432)
Q Consensus       276 ~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~-~~~~~~~id~~~~~~----~~~~i~  350 (432)
                      +.+.+|..|+..+|+..+..+.+..+|.||++||++|..+.|.|+++|+.+... +=+.++.|||.....    ..++|.
T Consensus        36 ~~~D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~  115 (606)
T KOG1731|consen   36 SPDDPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVS  115 (606)
T ss_pred             CCCCCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCC
Confidence            345789999999999999888889999999999999999999999999999874 358999999987766    479999


Q ss_pred             CCceEEEEeCCCccc-CceeccCCCCHHHHHHHHHhcCCCC
Q 013976          351 GFPTILFFPAGNKSF-DPINVDVDRTVVALYKFLKKNASIP  390 (432)
Q Consensus       351 ~~P~i~~~~~g~~~~-~~~~y~g~~~~~~l~~fi~~~~~~~  390 (432)
                      .||++.+|+.+.... .-..+.|.....++.+.+..-+...
T Consensus       116 ~~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la~~  156 (606)
T KOG1731|consen  116 GYPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLAEE  156 (606)
T ss_pred             CCceeeecCCccccCcCCCcccCCcchhhHHHHHHHHHHHH
Confidence            999999998774320 0124555555666666666555433

>PRK09381 trxA thioredoxin; Provisional

Probab=99.08  E-value=1e-09  Score=85.62  Aligned_cols=103  Identities=19%  Similarity=0.284  Sum_probs=87.2

Q ss_pred             ceeecCCCchhh-hccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcE
Q 013976          152 LVTIFTRENAPS-VFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKV  229 (432)
Q Consensus       152 ~v~~l~~~~~~~-~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~  229 (432)
                      .+.+++.+++.. +...+.++++.||++| +.|+.+.+.+++++.++.+++.|+.+|++.   .+.+++.|++...  |+
T Consensus         4 ~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~---~~~~~~~~~v~~~--Pt   78 (109)
T PRK09381          4 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQ---NPGTAPKYGIRGI--PT   78 (109)
T ss_pred             cceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCC---ChhHHHhCCCCcC--CE
Confidence            466788888875 4556678888999999 999999999999999999999999999998   4578899999887  99


Q ss_pred             EEEEeCCCCceecCCCCCCHHHHHHHHHHHh
Q 013976          230 LAYTGNDDAKKHILDGELTLDKIKTFGEDFL  260 (432)
Q Consensus       230 i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~  260 (432)
                      ++++.++ ...+.+.|..+.+.|..|++..+
T Consensus        79 ~~~~~~G-~~~~~~~G~~~~~~l~~~i~~~~  108 (109)
T PRK09381         79 LLLFKNG-EVAATKVGALSKGQLKEFLDANL  108 (109)
T ss_pred             EEEEeCC-eEEEEecCCCCHHHHHHHHHHhc
Confidence            9998644 35667788899999999998865

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=99.06  E-value=1.1e-09  Score=84.77  Aligned_cols=100  Identities=19%  Similarity=0.311  Sum_probs=84.5

Q ss_pred             eeecCCCchhhhccCCC-cceEEEEEeC-cchhhhHHHHHHHHHhcc--CceEEEEEecCCcccccchhhhhCCCCCCCc
Q 013976          153 VTIFTRENAPSVFESPI-KNQLLLFAVS-NDSEKLLPVFEEAAKSFK--GKLIFVYVQMDNEDVGKPVSEYFGITGEAPK  228 (432)
Q Consensus       153 v~~l~~~~~~~~~~~~~-~~~i~~~~~~-~~~~~~~~~~~~~a~~~~--~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P  228 (432)
                      +.+++++++........ +.++.||++| +.|+.+.+.+.++++.+.  +++.|+.+|+..+  +..+++.|++.+.  |
T Consensus         2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~--~~~~~~~~~i~~~--P   77 (105)
T cd02998           2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEA--NKDLAKKYGVSGF--P   77 (105)
T ss_pred             eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCc--chhhHHhCCCCCc--C
Confidence            46788888888765444 6688899999 999999999999999997  5699999999883  3488999999888  9


Q ss_pred             EEEEEeCCCCceecCCCCCCHHHHHHHH
Q 013976          229 VLAYTGNDDAKKHILDGELTLDKIKTFG  256 (432)
Q Consensus       229 ~i~i~~~~~~~~y~~~~~~~~~~i~~fi  256 (432)
                      +++++..+....+.+.|..+.++|.+|+
T Consensus        78 ~~~~~~~~~~~~~~~~g~~~~~~l~~~i  105 (105)
T cd02998          78 TLKFFPKGSTEPVKYEGGRDLEDLVKFV  105 (105)
T ss_pred             EEEEEeCCCCCccccCCccCHHHHHhhC
Confidence            9999987766677889999999999985

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=99.04  E-value=1.3e-09  Score=84.30  Aligned_cols=98  Identities=19%  Similarity=0.314  Sum_probs=82.0

Q ss_pred             eeecCCCchhhhccC-CCcceEEEEEeC-cchhhhHHHHHHHHHhccC--ceEEEEEecCCcccccchhhhhCCCCCCCc
Q 013976          153 VTIFTRENAPSVFES-PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG--KLIFVYVQMDNEDVGKPVSEYFGITGEAPK  228 (432)
Q Consensus       153 v~~l~~~~~~~~~~~-~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~--~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P  228 (432)
                      |.+++.+++...+.. +.++++.||++| +.|+.+.+.+.++++.+++  ++.|+.+|++..    +++..+++.++  |
T Consensus         2 v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~----~~~~~~~~~~~--P   75 (104)
T cd02995           2 VKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN----DVPSEFVVDGF--P   75 (104)
T ss_pred             eEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch----hhhhhccCCCC--C
Confidence            668899999886544 467788899999 9999999999999999987  599999999873    56788888666  9


Q ss_pred             EEEEEeCCC-CceecCCCCCCHHHHHHHH
Q 013976          229 VLAYTGNDD-AKKHILDGELTLDKIKTFG  256 (432)
Q Consensus       229 ~i~i~~~~~-~~~y~~~~~~~~~~i~~fi  256 (432)
                      +++++..+. .....+.|..+.+.|.+||
T Consensus        76 t~~~~~~~~~~~~~~~~g~~~~~~l~~fi  104 (104)
T cd02995          76 TILFFPAGDKSNPIKYEGDRTLEDLIKFI  104 (104)
T ss_pred             EEEEEcCCCcCCceEccCCcCHHHHHhhC
Confidence            999987665 4566789999999999986

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=99.03  E-value=1e-09  Score=95.71  Aligned_cols=104  Identities=15%  Similarity=0.226  Sum_probs=88.9

Q ss_pred             CceeecCCCchhhhccC-----CCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCC
Q 013976          151 PLVTIFTRENAPSVFES-----PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITG  224 (432)
Q Consensus       151 p~v~~l~~~~~~~~~~~-----~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~  224 (432)
                      ..+.++++++|+.....     +.++++.||++| ++|+.+.+.|+++|+++++.+.|+.+|++.   ++.+++.|+|.+
T Consensus        30 ~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~---~~~l~~~~~I~~  106 (224)
T PTZ00443         30 NALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATR---ALNLAKRFAIKG  106 (224)
T ss_pred             CCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcc---cHHHHHHcCCCc
Confidence            35788999999887642     357889999999 999999999999999999999999999998   568999999999


Q ss_pred             CCCcEEEEEeCCCCceec-CCCCCCHHHHHHHHHHHhc
Q 013976          225 EAPKVLAYTGNDDAKKHI-LDGELTLDKIKTFGEDFLE  261 (432)
Q Consensus       225 ~~~P~i~i~~~~~~~~y~-~~~~~~~~~i~~fi~~~~~  261 (432)
                      +  |+++++.++.  .+. ..|..+.++|.+|+...+.
T Consensus       107 ~--PTl~~f~~G~--~v~~~~G~~s~e~L~~fi~~~~~  140 (224)
T PTZ00443        107 Y--PTLLLFDKGK--MYQYEGGDRSTEKLAAFALGDFK  140 (224)
T ss_pred             C--CEEEEEECCE--EEEeeCCCCCHHHHHHHHHHHHH
Confidence            8  9999998553  333 3678999999999998774

>PTZ00062 glutaredoxin; Provisional

Probab=99.01  E-value=5.2e-09  Score=89.71  Aligned_cols=159  Identities=16%  Similarity=0.236  Sum_probs=104.0

Q ss_pred             CchhhhccCC-CcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCC
Q 013976          159 ENAPSVFESP-IKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGND  236 (432)
Q Consensus       159 ~~~~~~~~~~-~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~  236 (432)
                      +.+..+..++ ...+++|.++| ++|+.+.+.+.+++++|.+ +.|+.||.+           |+|...  |+++++.++
T Consensus         7 ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~-~~F~~V~~d-----------~~V~~v--Ptfv~~~~g   72 (204)
T PTZ00062          7 EEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPS-LEFYVVNLA-----------DANNEY--GVFEFYQNS   72 (204)
T ss_pred             HHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCC-cEEEEEccc-----------cCcccc--eEEEEEECC
Confidence            3444444433 34566666999 9999999999999999966 999999854           788887  999999766


Q ss_pred             CCceecCCCCCCHHHHHHHHHHHhcCCcCccccCCCCCCCCCCceEEEecccchhhhhcCCCcEEEEEe----CCCChhh
Q 013976          237 DAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIY----APWCGHC  312 (432)
Q Consensus       237 ~~~~y~~~~~~~~~~i~~fi~~~~~g~l~~~~~se~~p~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~----~~~c~~c  312 (432)
                      +. .-.+.| .+...|.+++..+......              .   ....-.++++  .+.+++|+--    .|+|+.|
T Consensus        73 ~~-i~r~~G-~~~~~~~~~~~~~~~~~~~--------------~---~~~~~v~~li--~~~~Vvvf~Kg~~~~p~C~~C  131 (204)
T PTZ00062         73 QL-INSLEG-CNTSTLVSFIRGWAQKGSS--------------E---DTVEKIERLI--RNHKILLFMKGSKTFPFCRFS  131 (204)
T ss_pred             EE-EeeeeC-CCHHHHHHHHHHHcCCCCH--------------H---HHHHHHHHHH--hcCCEEEEEccCCCCCCChhH
Confidence            42 223344 6789999999887652110              0   0112222322  3455555544    3799999


Q ss_pred             hhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--c----cCCCCCCceEEEEeCCC
Q 013976          313 QAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--H----RAKSDGFPTILFFPAGN  362 (432)
Q Consensus       313 ~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~----~~~i~~~P~i~~~~~g~  362 (432)
                      +++...|.+.        ++.+..+|+..++.  .    .-+..++|.|.  -+|+
T Consensus       132 ~~~k~~L~~~--------~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVf--I~G~  177 (204)
T PTZ00062        132 NAVVNMLNSS--------GVKYETYNIFEDPDLREELKVYSNWPTYPQLY--VNGE  177 (204)
T ss_pred             HHHHHHHHHc--------CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEE--ECCE
Confidence            9988777765        57777888876654  1    12445666654  4453

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=99.01  E-value=1.7e-09  Score=83.60  Aligned_cols=100  Identities=22%  Similarity=0.325  Sum_probs=85.2

Q ss_pred             eeecCCCchhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhcc--CceEEEEEecCCcccccchhhhhCCCCCCCcE
Q 013976          153 VTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFK--GKLIFVYVQMDNEDVGKPVSEYFGITGEAPKV  229 (432)
Q Consensus       153 v~~l~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~--~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~  229 (432)
                      +.++++.++...+..+.++++.||++| +.|+.+.+.+.+++..+.  +.+.++.+|+.... +..+++.+|++++  |+
T Consensus         2 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~-~~~~~~~~~i~~~--Pt   78 (104)
T cd02997           2 VVHLTDEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPE-HDALKEEYNVKGF--PT   78 (104)
T ss_pred             eEEechHhHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCc-cHHHHHhCCCccc--cE
Confidence            567788888888888888889999999 999999999999999997  66899999998744 5688999999888  99


Q ss_pred             EEEEeCCCCceecCCCCCCHHHHHHHH
Q 013976          230 LAYTGNDDAKKHILDGELTLDKIKTFG  256 (432)
Q Consensus       230 i~i~~~~~~~~y~~~~~~~~~~i~~fi  256 (432)
                      ++++.++. ....+.|..+.+.+.+|+
T Consensus        79 ~~~~~~g~-~~~~~~g~~~~~~l~~~l  104 (104)
T cd02997          79 FKYFENGK-FVEKYEGERTAEDIIEFM  104 (104)
T ss_pred             EEEEeCCC-eeEEeCCCCCHHHHHhhC
Confidence            98887553 466788999999998885

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>PRK10996 thioredoxin 2; Provisional

Probab=99.00  E-value=1.9e-09  Score=87.78  Aligned_cols=101  Identities=19%  Similarity=0.274  Sum_probs=86.5

Q ss_pred             eeecCCCchhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEE
Q 013976          153 VTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLA  231 (432)
Q Consensus       153 v~~l~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~  231 (432)
                      +..++.+++..+...++++++.||++| +.|+.+.+.|.+++.++.+.+.|+.+|+++   .+.+++.|+|.+.  |+++
T Consensus        37 ~i~~~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~---~~~l~~~~~V~~~--Ptli  111 (139)
T PRK10996         37 VINATGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEA---ERELSARFRIRSI--PTIM  111 (139)
T ss_pred             CEEcCHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCC---CHHHHHhcCCCcc--CEEE
Confidence            445777788888777888899999999 999999999999999999899999999987   5689999999988  9999


Q ss_pred             EEeCCCCceecCCCCCCHHHHHHHHHHH
Q 013976          232 YTGNDDAKKHILDGELTLDKIKTFGEDF  259 (432)
Q Consensus       232 i~~~~~~~~y~~~~~~~~~~i~~fi~~~  259 (432)
                      ++.++ .....+.|..+.+.|.+|+++.
T Consensus       112 i~~~G-~~v~~~~G~~~~e~l~~~l~~~  138 (139)
T PRK10996        112 IFKNG-QVVDMLNGAVPKAPFDSWLNEA  138 (139)
T ss_pred             EEECC-EEEEEEcCCCCHHHHHHHHHHh
Confidence            88644 3445668889999999999875

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=98.99  E-value=1.2e-09  Score=78.77  Aligned_cols=72  Identities=21%  Similarity=0.283  Sum_probs=58.3

Q ss_pred             EEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCcccccCCCCCCceEEEEeCCCcccCceeccCC-CCHHHHH
Q 013976          302 LEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVD-RTVVALY  380 (432)
Q Consensus       302 v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~~~~~i~~~P~i~~~~~g~~~~~~~~y~g~-~~~~~l~  380 (432)
                      |.||++||++|+.+.|.+++++..+..  .+.+..+| +.....++++.++|++++  +|+.     .+.|. .+.+.|.
T Consensus         3 i~~~a~~C~~C~~~~~~~~~~~~e~~~--~~~~~~v~-~~~~a~~~~v~~vPti~i--~G~~-----~~~G~~~~~~~l~   72 (76)
T TIGR00412         3 IQIYGTGCANCQMTEKNVKKAVEELGI--DAEFEKVT-DMNEILEAGVTATPGVAV--DGEL-----VIMGKIPSKEEIK   72 (76)
T ss_pred             EEEECCCCcCHHHHHHHHHHHHHHcCC--CeEEEEeC-CHHHHHHcCCCcCCEEEE--CCEE-----EEEeccCCHHHHH
Confidence            778999999999999999999999976  68888888 222336799999999999  6654     47774 5667887


Q ss_pred             HHH
Q 013976          381 KFL  383 (432)
Q Consensus       381 ~fi  383 (432)
                      +++
T Consensus        73 ~~l   75 (76)
T TIGR00412        73 EIL   75 (76)
T ss_pred             HHh
Confidence            776

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=98.98  E-value=1.6e-09  Score=83.00  Aligned_cols=97  Identities=19%  Similarity=0.299  Sum_probs=83.2

Q ss_pred             ecCCCchhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhc--cCceEEEEEecCCcccccchhhhhCCCCCCCcEEE
Q 013976          155 IFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSF--KGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLA  231 (432)
Q Consensus       155 ~l~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~--~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~  231 (432)
                      +++..++...+..+.+++++|+.+| +.|+.+.+.+.+++..+  .+.+.|+.+|+..   +..+++.|++...  |+++
T Consensus         2 ~l~~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~i~~~--Pt~~   76 (101)
T cd02961           2 ELTDDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA---NNDLCSEYGVRGY--PTIK   76 (101)
T ss_pred             cccHHHHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccc---hHHHHHhCCCCCC--CEEE
Confidence            4667778887777778888899999 89999999999999999  5789999999997   5689999999888  9999


Q ss_pred             EEeCCCCceecCCCCCCHHHHHHHH
Q 013976          232 YTGNDDAKKHILDGELTLDKIKTFG  256 (432)
Q Consensus       232 i~~~~~~~~y~~~~~~~~~~i~~fi  256 (432)
                      ++..++.....+.|..+.+.|.+|+
T Consensus        77 ~~~~~~~~~~~~~g~~~~~~i~~~~  101 (101)
T cd02961          77 LFPNGSKEPVKYEGPRTLESLVEFI  101 (101)
T ss_pred             EEcCCCcccccCCCCcCHHHHHhhC
Confidence            9977655667788888999998874

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=98.98  E-value=1.7e-09  Score=82.57  Aligned_cols=83  Identities=16%  Similarity=0.227  Sum_probs=72.4

Q ss_pred             cCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecC-CcccccchhhhhCCCCCCCcEEEEEeCCCCceecC
Q 013976          166 ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMD-NEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHIL  243 (432)
Q Consensus       166 ~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~-~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~  243 (432)
                      ..++++++.||++| ++|+.+.+.|+++|+.+.+ +.|+.+|++ .   ++.+++.|++.++  |++++++.+  ....+
T Consensus        16 ~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~-~~~~~vd~~~~---~~~l~~~~~V~~~--PT~~lf~~g--~~~~~   87 (100)
T cd02999          16 NREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ-IRHLAIEESSI---KPSLLSRYGVVGF--PTILLFNST--PRVRY   87 (100)
T ss_pred             cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc-CceEEEECCCC---CHHHHHhcCCeec--CEEEEEcCC--ceeEe
Confidence            35667889999999 9999999999999999986 888999987 4   5689999999988  999999765  56678


Q ss_pred             CCCCCHHHHHHHH
Q 013976          244 DGELTLDKIKTFG  256 (432)
Q Consensus       244 ~~~~~~~~i~~fi  256 (432)
                      .|..+.+.|.+||
T Consensus        88 ~G~~~~~~l~~f~  100 (100)
T cd02999          88 NGTRTLDSLAAFY  100 (100)
T ss_pred             cCCCCHHHHHhhC
Confidence            9999999999985

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=98.98  E-value=3.3e-09  Score=80.65  Aligned_cols=84  Identities=15%  Similarity=0.322  Sum_probs=72.9

Q ss_pred             CCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCceecCCCC
Q 013976          168 PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGE  246 (432)
Q Consensus       168 ~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~  246 (432)
                      +.++++.||++| ++|+.+.+.+.+++..+.+.+.|+.+|++.   .+.+++.|++.+.  |+++++..+ .....+.|.
T Consensus        12 ~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~---~~~l~~~~~i~~~--Pt~~~~~~g-~~~~~~~g~   85 (96)
T cd02956          12 QVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDA---QPQIAQQFGVQAL--PTVYLFAAG-QPVDGFQGA   85 (96)
T ss_pred             CCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccC---CHHHHHHcCCCCC--CEEEEEeCC-EEeeeecCC
Confidence            567889999999 999999999999999999889999999998   5689999999988  999999744 233457888


Q ss_pred             CCHHHHHHHHH
Q 013976          247 LTLDKIKTFGE  257 (432)
Q Consensus       247 ~~~~~i~~fi~  257 (432)
                      .+.+.|..|++
T Consensus        86 ~~~~~l~~~l~   96 (96)
T cd02956          86 QPEEQLRQMLD   96 (96)
T ss_pred             CCHHHHHHHhC
Confidence            99999999874

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=98.97  E-value=5.9e-09  Score=85.08  Aligned_cols=105  Identities=10%  Similarity=0.174  Sum_probs=86.2

Q ss_pred             CchhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCC
Q 013976          159 ENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDD  237 (432)
Q Consensus       159 ~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~  237 (432)
                      ..+......+++++|.||++| ..|+.+.+.+.+++.++.+.+.|+.+|++... ...+++.|++.+.  |++++++.++
T Consensus        11 ~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~-~~~~~~~~~V~~i--Pt~v~~~~~G   87 (142)
T cd02950          11 TPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPK-WLPEIDRYRVDGI--PHFVFLDREG   87 (142)
T ss_pred             CCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcc-cHHHHHHcCCCCC--CEEEEECCCC
Confidence            344555667778899999999 99999999999999999888889999887643 4577899999988  9999996554


Q ss_pred             CceecCCCCCCHHHHHHHHHHHhcCCcCc
Q 013976          238 AKKHILDGELTLDKIKTFGEDFLEGKLKP  266 (432)
Q Consensus       238 ~~~y~~~~~~~~~~i~~fi~~~~~g~l~~  266 (432)
                      .....+.|..+.+.|.++++.++.|.-.|
T Consensus        88 ~~v~~~~G~~~~~~l~~~l~~l~~~~~~~  116 (142)
T cd02950          88 NEEGQSIGLQPKQVLAQNLDALVAGEPLP  116 (142)
T ss_pred             CEEEEEeCCCCHHHHHHHHHHHHcCCCCC
Confidence            45556788889999999999999876443

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent

Probab=98.91  E-value=6.7e-09  Score=99.84  Aligned_cols=105  Identities=10%  Similarity=0.146  Sum_probs=87.9

Q ss_pred             CceeecCCCchhhhcc---CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCc-eEEEEEecCCcccccchh-hhhCCCC
Q 013976          151 PLVTIFTRENAPSVFE---SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNEDVGKPVS-EYFGITG  224 (432)
Q Consensus       151 p~v~~l~~~~~~~~~~---~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~-i~f~~vd~~~~~~~~~l~-~~~~i~~  224 (432)
                      +.|.+|++++|+.++.   .+.+++|.||++| +.|+.+.+.|+++|.++++. +.|+.+|++...  ..++ +.|+|..
T Consensus       351 ~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~--~~~~~~~~~I~~  428 (463)
T TIGR00424       351 NNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQ--KEFAKQELQLGS  428 (463)
T ss_pred             CCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCc--cHHHHHHcCCCc
Confidence            4688999999998864   6677889999999 99999999999999999875 899999998742  2344 6899998


Q ss_pred             CCCcEEEEEeCCCCceecCC-CCCCHHHHHHHHHHH
Q 013976          225 EAPKVLAYTGNDDAKKHILD-GELTLDKIKTFGEDF  259 (432)
Q Consensus       225 ~~~P~i~i~~~~~~~~y~~~-~~~~~~~i~~fi~~~  259 (432)
                      +  |+++++.++......|. |.++.++|..||.-+
T Consensus       429 ~--PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~~  462 (463)
T TIGR00424       429 F--PTILFFPKHSSRPIKYPSEKRDVDSLMSFVNLL  462 (463)
T ss_pred             c--ceEEEEECCCCCceeCCCCCCCHHHHHHHHHhh
Confidence            8  99999987765566786 589999999999753

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=98.91  E-value=5.6e-09  Score=81.54  Aligned_cols=86  Identities=10%  Similarity=0.087  Sum_probs=74.2

Q ss_pred             CCCcceEEEEEeC-cchhhhHHHHHHHHHhccC-ceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCceecCC
Q 013976          167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILD  244 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~-~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~  244 (432)
                      .+++++|.||++| +.|+.+.+.+.++++++.+ ++.|+.+|++.   .+.+++.+||.++  |+++++..++ ....+.
T Consensus        23 ~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~---~~~l~~~~~V~~~--Pt~~i~~~g~-~~~~~~   96 (111)
T cd02963          23 FKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGH---ERRLARKLGAHSV--PAIVGIINGQ-VTFYHD   96 (111)
T ss_pred             CCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccc---cHHHHHHcCCccC--CEEEEEECCE-EEEEec
Confidence            4668899999999 9999999999999999986 59999999998   4588999999988  9999887553 444568


Q ss_pred             CCCCHHHHHHHHHH
Q 013976          245 GELTLDKIKTFGED  258 (432)
Q Consensus       245 ~~~~~~~i~~fi~~  258 (432)
                      |..+.+.|.+|+++
T Consensus        97 G~~~~~~l~~~i~~  110 (111)
T cd02963          97 SSFTKQHVVDFVRK  110 (111)
T ss_pred             CCCCHHHHHHHHhc
Confidence            88999999999975

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>PHA02125 thioredoxin-like protein

Probab=98.90  E-value=3.7e-09  Score=76.06  Aligned_cols=68  Identities=16%  Similarity=0.330  Sum_probs=52.1

Q ss_pred             EEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCcccCceeccC-CCCHH
Q 013976          301 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDV-DRTVV  377 (432)
Q Consensus       301 lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~~~g~~~~~~~~y~g-~~~~~  377 (432)
                      +++||++||++|+.+.|.|.+++        +.++.+|++.+..  .+++|.++||++   .|+.+.   .+.| ..+..
T Consensus         2 iv~f~a~wC~~Ck~~~~~l~~~~--------~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~---~~~G~~~~~~   67 (75)
T PHA02125          2 IYLFGAEWCANCKMVKPMLANVE--------YTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTLD---RFTGVPRNVA   67 (75)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHh--------heEEeeeCCCCHHHHHHcCCceeCeEE---CCEEEE---EEeCCCCcHH
Confidence            78999999999999999997662        4678889877766  689999999998   455443   5667 44556


Q ss_pred             HHHHH
Q 013976          378 ALYKF  382 (432)
Q Consensus       378 ~l~~f  382 (432)
                      +|.+-
T Consensus        68 ~l~~~   72 (75)
T PHA02125         68 ELKEK   72 (75)
T ss_pred             HHHHH
Confidence            65543

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=98.88  E-value=8.6e-09  Score=103.39  Aligned_cols=98  Identities=28%  Similarity=0.465  Sum_probs=77.0

Q ss_pred             cccchhhhh---cCCCcEEEEEeCCCChhhhhhHHHH---HHHHHHhcCCCCEEEEEEeCCCccc------ccCCCCCCc
Q 013976          286 GNNFDEIVL---DESKDVLLEIYAPWCGHCQAFEPTY---NKLAKHLRGVDSIVIAKMDGTTNEH------HRAKSDGFP  353 (432)
Q Consensus       286 ~~~~~~~~~---~~~~~~lv~f~~~~c~~c~~~~~~~---~~la~~~~~~~~~~~~~id~~~~~~------~~~~i~~~P  353 (432)
                      .+++++.+.   ..+++++|+||++||.+|+.+.+..   .++.+.++   ++.++++|+++++.      .++++.++|
T Consensus       460 ~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~---~~~~v~vDvt~~~~~~~~l~~~~~v~g~P  536 (571)
T PRK00293        460 VAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA---DTVLLQADVTANNAEDVALLKHYNVLGLP  536 (571)
T ss_pred             HHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc---CCEEEEEECCCCChhhHHHHHHcCCCCCC
Confidence            456666553   2358999999999999999998764   56767775   48899999987643      479999999


Q ss_pred             eEEEEe-CCCcccCceeccCCCCHHHHHHHHHhcC
Q 013976          354 TILFFP-AGNKSFDPINVDVDRTVVALYKFLKKNA  387 (432)
Q Consensus       354 ~i~~~~-~g~~~~~~~~y~g~~~~~~l~~fi~~~~  387 (432)
                      ++++|. +|+.+ +..++.|..+.+.+.+++++..
T Consensus       537 t~~~~~~~G~~i-~~~r~~G~~~~~~f~~~L~~~~  570 (571)
T PRK00293        537 TILFFDAQGQEI-PDARVTGFMDAAAFAAHLRQLQ  570 (571)
T ss_pred             EEEEECCCCCCc-ccccccCCCCHHHHHHHHHHhc
Confidence            999996 56653 2347889999999999998753

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.88  E-value=1e-08  Score=90.41  Aligned_cols=106  Identities=18%  Similarity=0.242  Sum_probs=89.4

Q ss_pred             CceeecCCCchhhhc---cCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCC
Q 013976          151 PLVTIFTRENAPSVF---ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEA  226 (432)
Q Consensus       151 p~v~~l~~~~~~~~~---~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~  226 (432)
                      +.|.++|..||...+   +...|+++.||++| ++|+++.+.+++++.+|+|++.++.|||+.   .+.+...|||+.- 
T Consensus        23 ~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~---~p~vAaqfgiqsI-   98 (304)
T COG3118          23 PGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDA---EPMVAAQFGVQSI-   98 (304)
T ss_pred             ccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCc---chhHHHHhCcCcC-
Confidence            448889999998743   23347788899999 999999999999999999999999999999   6799999999998 


Q ss_pred             CcEEEEEeCCCCceecCCCCCCHHHHHHHHHHHhcC
Q 013976          227 PKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEG  262 (432)
Q Consensus       227 ~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g  262 (432)
                       |+++.+..++ ..--|.|....+.|.+|++.+++.
T Consensus        99 -PtV~af~dGq-pVdgF~G~qPesqlr~~ld~~~~~  132 (304)
T COG3118          99 -PTVYAFKDGQ-PVDGFQGAQPESQLRQFLDKVLPA  132 (304)
T ss_pred             -CeEEEeeCCc-CccccCCCCcHHHHHHHHHHhcCh
Confidence             9998886553 223467888888999999999864

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=98.86  E-value=2.3e-08  Score=76.41  Aligned_cols=95  Identities=16%  Similarity=0.152  Sum_probs=80.4

Q ss_pred             eeecCCCchhhhccCCCcceEEEEEeC---cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcE
Q 013976          153 VTIFTRENAPSVFESPIKNQLLLFAVS---NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKV  229 (432)
Q Consensus       153 v~~l~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~  229 (432)
                      +.+++..|+......+...++.|+++|   ++|..+.+.+.++|++|.+.+.|+.+|+++   ++.++..|+|.+.  |+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~---~~~la~~f~V~sI--PT   86 (111)
T cd02965          12 WPRVDAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRAD---EQALAARFGVLRT--PA   86 (111)
T ss_pred             CcccccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCC---CHHHHHHcCCCcC--CE
Confidence            567899999988888778888899995   899999999999999999999999999998   5699999999998  99


Q ss_pred             EEEEeCCCCceecCCCCCCHHHHH
Q 013976          230 LAYTGNDDAKKHILDGELTLDKIK  253 (432)
Q Consensus       230 i~i~~~~~~~~y~~~~~~~~~~i~  253 (432)
                      ++++.+++ ....+.|..+.+.+.
T Consensus        87 li~fkdGk-~v~~~~G~~~~~e~~  109 (111)
T cd02965          87 LLFFRDGR-YVGVLAGIRDWDEYV  109 (111)
T ss_pred             EEEEECCE-EEEEEeCccCHHHHh
Confidence            99997663 344556777766653

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>PRK11509 hydrogenase-1 operon protein HyaE; Provisional

Probab=98.84  E-value=2.9e-08  Score=78.24  Aligned_cols=105  Identities=14%  Similarity=0.121  Sum_probs=88.0

Q ss_pred             EEEecccchhhhhcCCCcEEEEEeCC--CChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEE
Q 013976          282 KIVVGNNFDEIVLDESKDVLLEIYAP--WCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILF  357 (432)
Q Consensus       282 ~~l~~~~~~~~~~~~~~~~lv~f~~~--~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~  357 (432)
                      ..++..+++.++ ......+|+|-..  .+..+....-++.+|++.|.+. ++.++++|++.+..  .+|+|.++||+++
T Consensus        20 ~~~~~~~~~~~~-~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~-~v~~akVDiD~~~~LA~~fgV~siPTLl~   97 (132)
T PRK11509         20 TPVSESRLDDWL-TQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDY-TWQVAIADLEQSEAIGDRFGVFRFPATLV   97 (132)
T ss_pred             CccccccHHHHH-hCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCC-ceEEEEEECCCCHHHHHHcCCccCCEEEE
Confidence            446678888877 5556677777553  3678888999999999999742 59999999999988  7999999999999


Q ss_pred             EeCCCcccCceeccCCCCHHHHHHHHHhcCCCCC
Q 013976          358 FPAGNKSFDPINVDVDRTVVALYKFLKKNASIPF  391 (432)
Q Consensus       358 ~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~~  391 (432)
                      |++|+.+.   ...|..+.+.+.+||+++++.+.
T Consensus        98 FkdGk~v~---~i~G~~~k~~l~~~I~~~L~~~~  128 (132)
T PRK11509         98 FTGGNYRG---VLNGIHPWAELINLMRGLVEPQQ  128 (132)
T ss_pred             EECCEEEE---EEeCcCCHHHHHHHHHHHhcCcC
Confidence            99999876   88899999999999999987654

>TIGR01068 thioredoxin thioredoxin

Probab=98.84  E-value=1.8e-08  Score=77.31  Aligned_cols=97  Identities=22%  Similarity=0.274  Sum_probs=78.3

Q ss_pred             CCCchhhhccC-CCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEe
Q 013976          157 TRENAPSVFES-PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTG  234 (432)
Q Consensus       157 ~~~~~~~~~~~-~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~  234 (432)
                      +.+++...+.. +.+++++||++| ..|+.+.+.+.+++.++.+++.|+.+|++.   .+.+++.||+...  |+++++.
T Consensus         2 ~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~---~~~~~~~~~v~~~--P~~~~~~   76 (101)
T TIGR01068         2 TDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDE---NPDIAAKYGIRSI--PTLLLFK   76 (101)
T ss_pred             CHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCC---CHHHHHHcCCCcC--CEEEEEe
Confidence            34455554444 447788899999 999999999999999999889999999998   5588999999987  9999886


Q ss_pred             CCCCceecCCCCCCHHHHHHHHHHH
Q 013976          235 NDDAKKHILDGELTLDKIKTFGEDF  259 (432)
Q Consensus       235 ~~~~~~y~~~~~~~~~~i~~fi~~~  259 (432)
                      .+. ....+.|..+.+.+.+|+++.
T Consensus        77 ~g~-~~~~~~g~~~~~~l~~~l~~~  100 (101)
T TIGR01068        77 NGK-EVDRSVGALPKAALKQLINKN  100 (101)
T ss_pred             CCc-EeeeecCCCCHHHHHHHHHhh
Confidence            543 445567888999999999864

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=98.83  E-value=2.8e-08  Score=96.85  Aligned_cols=90  Identities=14%  Similarity=0.246  Sum_probs=70.4

Q ss_pred             hhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCC----------------------------Cccc
Q 013976          293 VLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT----------------------------TNEH  344 (432)
Q Consensus       293 ~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~----------------------------~~~~  344 (432)
                      .+..++++||.|||+||++|+.++|.+.++++.++.. ++.++.|...                            .+..
T Consensus        52 ~lskGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~-~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~  130 (521)
T PRK14018         52 YLKKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFS-SANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGT  130 (521)
T ss_pred             eccCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccC-CeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHH
Confidence            3456789999999999999999999999999998742 4666655431                            1111


Q ss_pred             --ccCCCCCCceEEEE-eCCCcccCceeccCCCCHHHHHHHHHhc
Q 013976          345 --HRAKSDGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKN  386 (432)
Q Consensus       345 --~~~~i~~~P~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~  386 (432)
                        ..++|.++|+++++ ++|+.+.   .+.|..+.+.|.++|+.-
T Consensus       131 lak~fgV~giPTt~IIDkdGkIV~---~~~G~~~~eeL~a~Ie~~  172 (521)
T PRK14018        131 LAQSLNISVYPSWAIIGKDGDVQR---IVKGSISEAQALALIRNP  172 (521)
T ss_pred             HHHHcCCCCcCeEEEEcCCCeEEE---EEeCCCCHHHHHHHHHHh
Confidence              36799999999776 7777665   788999999999999943

>PLN02309 5'-adenylylsulfate reductase

Probab=98.82  E-value=1.9e-08  Score=96.75  Aligned_cols=105  Identities=11%  Similarity=0.169  Sum_probs=87.9

Q ss_pred             CceeecCCCchhhhc---cCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCc-eEEEEEecCCcccccchhh-hhCCCC
Q 013976          151 PLVTIFTRENAPSVF---ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNEDVGKPVSE-YFGITG  224 (432)
Q Consensus       151 p~v~~l~~~~~~~~~---~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~-i~f~~vd~~~~~~~~~l~~-~~~i~~  224 (432)
                      +.|.+++.+++..++   ..++.++|.||++| ++|+.+.+.|.++|.++.+. +.|+.+|++..  ...++. .|+|..
T Consensus       345 ~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~--~~~la~~~~~I~~  422 (457)
T PLN02309        345 QNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGD--QKEFAKQELQLGS  422 (457)
T ss_pred             CCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCc--chHHHHhhCCCce
Confidence            367888999988775   46778899999999 99999999999999999864 99999999832  456775 699998


Q ss_pred             CCCcEEEEEeCCCCceecCCC-CCCHHHHHHHHHHH
Q 013976          225 EAPKVLAYTGNDDAKKHILDG-ELTLDKIKTFGEDF  259 (432)
Q Consensus       225 ~~~P~i~i~~~~~~~~y~~~~-~~~~~~i~~fi~~~  259 (432)
                      +  |+++++.++......|.| .++.++|..||...
T Consensus       423 ~--PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~  456 (457)
T PLN02309        423 F--PTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL  456 (457)
T ss_pred             e--eEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence            8  999999877666677874 79999999999864

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=98.80  E-value=3.5e-08  Score=76.18  Aligned_cols=93  Identities=18%  Similarity=0.209  Sum_probs=76.4

Q ss_pred             CchhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccC---ceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEe
Q 013976          159 ENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG---KLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTG  234 (432)
Q Consensus       159 ~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~---~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~  234 (432)
                      +++... ..+..+++.||++| +.|+.+.+.|.+++..+++   .+.++.+|+..   .+.+++.+++.+.  |+++++.
T Consensus         7 ~~~~~~-~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~---~~~~~~~~~I~~~--Pt~~l~~   80 (104)
T cd03000           7 DSFKDV-RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATA---YSSIASEFGVRGY--PTIKLLK   80 (104)
T ss_pred             hhhhhh-ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECcc---CHhHHhhcCCccc--cEEEEEc
Confidence            445554 34557889999999 9999999999999999953   48999999987   4588999999988  9999885


Q ss_pred             CCCCceecCCCCCCHHHHHHHHHHH
Q 013976          235 NDDAKKHILDGELTLDKIKTFGEDF  259 (432)
Q Consensus       235 ~~~~~~y~~~~~~~~~~i~~fi~~~  259 (432)
                      ++  ..+.+.|..+.+.|.+|+++.
T Consensus        81 ~~--~~~~~~G~~~~~~l~~~~~~~  103 (104)
T cd03000          81 GD--LAYNYRGPRTKDDIVEFANRV  103 (104)
T ss_pred             CC--CceeecCCCCHHHHHHHHHhh
Confidence            43  456678999999999999874

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.79  E-value=1.6e-07  Score=94.80  Aligned_cols=182  Identities=15%  Similarity=0.109  Sum_probs=132.0

Q ss_pred             cceEEEEEeC--cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCC-CCceecCCCC
Q 013976          170 KNQLLLFAVS--NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGND-DAKKHILDGE  246 (432)
Q Consensus       170 ~~~i~~~~~~--~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~-~~~~y~~~~~  246 (432)
                      ++.+.+|.+.  +.|..+...+++++ .+.+++.+...|..+   ...+.+.|++...  |++.+.+.+ ......|-|-
T Consensus       367 ~v~l~~~~~~~~~~~~e~~~~l~e~~-~~s~~i~~~~~~~~~---~~~~~~~~~v~~~--P~~~i~~~~~~~~~i~f~g~  440 (555)
T TIGR03143       367 PVTLLLFLDGSNEKSAELQSFLGEFA-SLSEKLNSEAVNRGE---EPESETLPKITKL--PTVALLDDDGNYTGLKFHGV  440 (555)
T ss_pred             CEEEEEEECCCchhhHHHHHHHHHHH-hcCCcEEEEEecccc---chhhHhhcCCCcC--CEEEEEeCCCcccceEEEec
Confidence            4455566554  47888888888988 667789888888766   3477899999866  999998533 2233566777


Q ss_pred             CCHHHHHHHHHHHhcCCcCccccCCCCCCCCCCceEEEecccchhhhhcCCCcE-EEEEeCCCChhhhhhHHHHHHHHHH
Q 013976          247 LTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDV-LLEIYAPWCGHCQAFEPTYNKLAKH  325 (432)
Q Consensus       247 ~~~~~i~~fi~~~~~g~l~~~~~se~~p~~~~~~v~~l~~~~~~~~~~~~~~~~-lv~f~~~~c~~c~~~~~~~~~la~~  325 (432)
                      ..-.++..||..+++-.-.               -..|.....+. +..-++++ +-.|.+++|.+|......+++++..
T Consensus       441 P~G~Ef~s~i~~i~~~~~~---------------~~~l~~~~~~~-i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~  504 (555)
T TIGR03143       441 PSGHELNSFILALYNAAGP---------------GQPLGEELLEK-IKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASL  504 (555)
T ss_pred             CccHhHHHHHHHHHHhcCC---------------CCCCCHHHHHH-HHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHh
Confidence            7778888888888752111               11233333333 43445665 5567899999999998889888887


Q ss_pred             hcCCCCEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCcccCceeccCCCCHHHHHHHH
Q 013976          326 LRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFL  383 (432)
Q Consensus       326 ~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi  383 (432)
                      ..   ++..-.+|+.....  .+|+|.++|++++  +|..     .+.|..+.+.|++||
T Consensus       505 ~~---~i~~~~i~~~~~~~~~~~~~v~~vP~~~i--~~~~-----~~~G~~~~~~~~~~~  554 (555)
T TIGR03143       505 NP---NVEAEMIDVSHFPDLKDEYGIMSVPAIVV--DDQQ-----VYFGKKTIEEMLELI  554 (555)
T ss_pred             CC---CceEEEEECcccHHHHHhCCceecCEEEE--CCEE-----EEeeCCCHHHHHHhh
Confidence            54   48888889888877  6999999999987  4433     678988999999886

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=98.78  E-value=5.5e-09  Score=81.95  Aligned_cols=84  Identities=20%  Similarity=0.381  Sum_probs=59.6

Q ss_pred             cCCCcEEEEEeCCCChhhhhhHHHHHHHHH---HhcCCCCEEEEEEeCCCcc---------------------c-ccCCC
Q 013976          295 DESKDVLLEIYAPWCGHCQAFEPTYNKLAK---HLRGVDSIVIAKMDGTTNE---------------------H-HRAKS  349 (432)
Q Consensus       295 ~~~~~~lv~f~~~~c~~c~~~~~~~~~la~---~~~~~~~~~~~~id~~~~~---------------------~-~~~~i  349 (432)
                      .++++++++|+++||++|+.+.+.+.....   .++.  ++.++.+++....                     . ..++|
T Consensus         3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v   80 (112)
T PF13098_consen    3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKD--DFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGV   80 (112)
T ss_dssp             TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHC--ECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT-
T ss_pred             CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhc--CeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCC
Confidence            356899999999999999999988886544   3333  5777777777542                     1 46799


Q ss_pred             CCCceEEEEe-CCCcccCceeccCCCCHHHHHHHH
Q 013976          350 DGFPTILFFP-AGNKSFDPINVDVDRTVVALYKFL  383 (432)
Q Consensus       350 ~~~P~i~~~~-~g~~~~~~~~y~g~~~~~~l~~fi  383 (432)
                      .++|+++++. +|+.+.   .+.|..+.+.|.++|
T Consensus        81 ~gtPt~~~~d~~G~~v~---~~~G~~~~~~l~~~L  112 (112)
T PF13098_consen   81 NGTPTIVFLDKDGKIVY---RIPGYLSPEELLKML  112 (112)
T ss_dssp             -SSSEEEECTTTSCEEE---EEESS--HHHHHHHH
T ss_pred             CccCEEEEEcCCCCEEE---EecCCCCHHHHHhhC
Confidence            9999999995 676553   688999999998875

...

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=98.75  E-value=6.6e-08  Score=79.44  Aligned_cols=86  Identities=13%  Similarity=0.182  Sum_probs=61.3

Q ss_pred             CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCcc---------c----ccC---CCCCCceEEEEeC
Q 013976          297 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE---------H----HRA---KSDGFPTILFFPA  360 (432)
Q Consensus       297 ~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~---------~----~~~---~i~~~P~i~~~~~  360 (432)
                      ++..+|+||++||++|++..|.+.++++.++-  .+..+.+|-....         .    ..+   ++.++|+.+++..
T Consensus        50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~~--~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~  127 (153)
T TIGR02738        50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQFGL--PVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNV  127 (153)
T ss_pred             CCCEEEEEECCCChhHHHHHHHHHHHHHHcCC--cEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeC
Confidence            45669999999999999999999999998842  3444444422100         1    123   6789999999954


Q ss_pred             -CCcccCceeccCCCCHHHHHHHHHhc
Q 013976          361 -GNKSFDPINVDVDRTVVALYKFLKKN  386 (432)
Q Consensus       361 -g~~~~~~~~y~g~~~~~~l~~fi~~~  386 (432)
                       |..+  ...+.|..+.+.+.+.|.+.
T Consensus       128 ~G~~i--~~~~~G~~s~~~l~~~I~~l  152 (153)
T TIGR02738       128 NTRKA--YPVLQGAVDEAELANRMDEI  152 (153)
T ss_pred             CCCEE--EEEeecccCHHHHHHHHHHh
Confidence             4432  12578899999998888764

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=98.74  E-value=4.3e-08  Score=75.68  Aligned_cols=96  Identities=16%  Similarity=0.124  Sum_probs=77.3

Q ss_pred             chhhhccCCCcceEEEEEeC-cchhhhHHHH---HHHHHhccCceEEEEEecCCcc-cccchhhhhCCCCCCCcEEEEEe
Q 013976          160 NAPSVFESPIKNQLLLFAVS-NDSEKLLPVF---EEAAKSFKGKLIFVYVQMDNED-VGKPVSEYFGITGEAPKVLAYTG  234 (432)
Q Consensus       160 ~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~---~~~a~~~~~~i~f~~vd~~~~~-~~~~l~~~~~i~~~~~P~i~i~~  234 (432)
                      .+.+...++++++|.|+++| +.|+.+.+.+   .+++..+.+++.++.+|++... ....+++.|++.+.  |+++++.
T Consensus         3 ~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~--Pti~~~~   80 (104)
T cd02953           3 ALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGP--PTYLFYG   80 (104)
T ss_pred             HHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCC--CEEEEEC
Confidence            45556677888899999999 9999999887   6788888878999999987531 13578899999988  9999998


Q ss_pred             C-CCCceecCCCCCCHHHHHHHHH
Q 013976          235 N-DDAKKHILDGELTLDKIKTFGE  257 (432)
Q Consensus       235 ~-~~~~~y~~~~~~~~~~i~~fi~  257 (432)
                      . ++.....+.|.++.++|.+++.
T Consensus        81 ~~~g~~~~~~~G~~~~~~l~~~l~  104 (104)
T cd02953          81 PGGEPEPLRLPGFLTADEFLEALE  104 (104)
T ss_pred             CCCCCCCcccccccCHHHHHHHhC
Confidence            6 4445677889999999988863

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=98.74  E-value=8.6e-08  Score=75.67  Aligned_cols=69  Identities=23%  Similarity=0.390  Sum_probs=54.0

Q ss_pred             hcCCCcEEEEEeCCCChhhhhhHHH-H--HHHHHHhcCCCCEEEEEEeCCCccc--c--------cCCCCCCceEEEE-e
Q 013976          294 LDESKDVLLEIYAPWCGHCQAFEPT-Y--NKLAKHLRGVDSIVIAKMDGTTNEH--H--------RAKSDGFPTILFF-P  359 (432)
Q Consensus       294 ~~~~~~~lv~f~~~~c~~c~~~~~~-~--~~la~~~~~~~~~~~~~id~~~~~~--~--------~~~i~~~P~i~~~-~  359 (432)
                      ...+++++|.|+++||..|+.|.+. |  .+++..+..  ++.++.+|.++++.  .        .+++.++|+++++ +
T Consensus        12 k~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~--~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~   89 (124)
T cd02955          12 RREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE--NFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTP   89 (124)
T ss_pred             HHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC--CEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECC
Confidence            4668999999999999999999763 3  256666655  69999999987654  1        2588999999999 5


Q ss_pred             CCCcc
Q 013976          360 AGNKS  364 (432)
Q Consensus       360 ~g~~~  364 (432)
                      +|+.+
T Consensus        90 ~G~~~   94 (124)
T cd02955          90 DLKPF   94 (124)
T ss_pred             CCCEE
Confidence            56654

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>TIGR02740 TraF-like TraF-like protein

Probab=98.74  E-value=3.4e-08  Score=89.43  Aligned_cols=88  Identities=15%  Similarity=0.153  Sum_probs=67.7

Q ss_pred             CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCc---------cc--ccCCCCCCceEEEEeC-CCcc
Q 013976          297 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN---------EH--HRAKSDGFPTILFFPA-GNKS  364 (432)
Q Consensus       297 ~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~---------~~--~~~~i~~~P~i~~~~~-g~~~  364 (432)
                      ++.+||+||++||++|+.+.|.+.+++..++-  .+..+.+|....         ..  .+++|.++|+++++.. |+.+
T Consensus       166 ~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg~--~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~v  243 (271)
T TIGR02740       166 KKSGLFFFFKSDCPYCHQQAPILQAFEDRYGI--EVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQF  243 (271)
T ss_pred             CCeEEEEEECCCCccHHHHhHHHHHHHHHcCc--EEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCEE
Confidence            57899999999999999999999999999853  344455544321         11  5789999999999976 5544


Q ss_pred             cCceeccCCCCHHHHHHHHHhcCC
Q 013976          365 FDPINVDVDRTVVALYKFLKKNAS  388 (432)
Q Consensus       365 ~~~~~y~g~~~~~~l~~fi~~~~~  388 (432)
                       .+ ...|..+.+.|.+.|...++
T Consensus       244 -~~-v~~G~~s~~eL~~~i~~~a~  265 (271)
T TIGR02740       244 -TP-IGFGVMSADELVDRILLAAH  265 (271)
T ss_pred             -EE-EEeCCCCHHHHHHHHHHHhc
Confidence             11 34578899999999987765

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=98.73  E-value=1e-08  Score=78.90  Aligned_cols=66  Identities=6%  Similarity=0.011  Sum_probs=59.3

Q ss_pred             CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCC
Q 013976          167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDD  237 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~  237 (432)
                      .+.++++.|+++| ++|+.+.+.+.++|.++.+.+.|+.||+++   ++.+.+.|||++.  |+++++.+++
T Consensus        13 ~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~---~~~la~~~~V~~i--PTf~~fk~G~   79 (114)
T cd02954          13 EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDE---VPDFNKMYELYDP--PTVMFFFRNK   79 (114)
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCC---CHHHHHHcCCCCC--CEEEEEECCE
Confidence            3456788899999 999999999999999999989999999998   6799999999998  9999997664

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>PHA02278 thioredoxin-like protein

Probab=98.73  E-value=4.1e-08  Score=75.02  Aligned_cols=94  Identities=14%  Similarity=0.108  Sum_probs=74.6

Q ss_pred             CchhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcc-cccchhhhhCCCCCCCcEEEEEeCC
Q 013976          159 ENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED-VGKPVSEYFGITGEAPKVLAYTGND  236 (432)
Q Consensus       159 ~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~-~~~~l~~~~~i~~~~~P~i~i~~~~  236 (432)
                      +.+...+..+.++++.||++| ++|+.+.+.+.+++.++.+++.|+.+|++... ..+.+++.|+|.+.  |+++++.++
T Consensus         5 ~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~i--PT~i~fk~G   82 (103)
T PHA02278          5 VDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMST--PVLIGYKDG   82 (103)
T ss_pred             HHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccc--cEEEEEECC
Confidence            345555667778899999999 99999999999999987777789999998631 02478899999998  999999766


Q ss_pred             CCceecCCCCCCHHHHHHH
Q 013976          237 DAKKHILDGELTLDKIKTF  255 (432)
Q Consensus       237 ~~~~y~~~~~~~~~~i~~f  255 (432)
                      + ..-...|..+.+.|.++
T Consensus        83 ~-~v~~~~G~~~~~~l~~~  100 (103)
T PHA02278         83 Q-LVKKYEDQVTPMQLQEL  100 (103)
T ss_pred             E-EEEEEeCCCCHHHHHhh
Confidence            4 33456787888887765

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=98.71  E-value=3.6e-08  Score=69.30  Aligned_cols=54  Identities=17%  Similarity=0.231  Sum_probs=47.0

Q ss_pred             EEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEE
Q 013976          301 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILF  357 (432)
Q Consensus       301 lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~  357 (432)
                      +++|+++||++|+.+.+.+++++....   ++.+..+|++++..  .++++.++|++++
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~l~~~~~---~i~~~~id~~~~~~l~~~~~i~~vPti~i   58 (67)
T cd02973           3 IEVFVSPTCPYCPDAVQAANRIAALNP---NISAEMIDAAEFPDLADEYGVMSVPAIVI   58 (67)
T ss_pred             EEEEECCCCCCcHHHHHHHHHHHHhCC---ceEEEEEEcccCHhHHHHcCCcccCEEEE
Confidence            678999999999999999999987543   59999999987765  6899999999866

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=98.70  E-value=1.3e-07  Score=73.90  Aligned_cols=99  Identities=10%  Similarity=0.028  Sum_probs=77.5

Q ss_pred             ceeecCC-CchhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcE
Q 013976          152 LVTIFTR-ENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKV  229 (432)
Q Consensus       152 ~v~~l~~-~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~  229 (432)
                      .+..++. +.+...+.++.++++.||++| ++|+.+.+.+.++++++.+ +.|+.+|+++   .+.+++.|++...  |+
T Consensus         5 ~v~~i~~~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~-i~f~~Vd~~~---~~~l~~~~~v~~v--Pt   78 (113)
T cd02989           5 KYREVSDEKEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE-TKFIKVNAEK---APFLVEKLNIKVL--PT   78 (113)
T ss_pred             CeEEeCCHHHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC-CEEEEEEccc---CHHHHHHCCCccC--CE
Confidence            3445555 666666666778889999999 9999999999999999876 8999999998   5689999999988  99


Q ss_pred             EEEEeCCCCc--e---ecC--CCCCCHHHHHHHH
Q 013976          230 LAYTGNDDAK--K---HIL--DGELTLDKIKTFG  256 (432)
Q Consensus       230 i~i~~~~~~~--~---y~~--~~~~~~~~i~~fi  256 (432)
                      ++++.+++..  .   ..+  .++++.+++..|+
T Consensus        79 ~l~fk~G~~v~~~~g~~~~~~~~~~~~~~~e~~~  112 (113)
T cd02989          79 VILFKNGKTVDRIVGFEELGGKDDFSTETLEKRL  112 (113)
T ss_pred             EEEEECCEEEEEEECccccCCCCCCCHHHHHHHh
Confidence            9999776521  1   112  1367888888876

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=98.69  E-value=7.5e-08  Score=73.97  Aligned_cols=94  Identities=9%  Similarity=0.130  Sum_probs=76.4

Q ss_pred             CCCchhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCc-eEEEEEecCCcccccchhhhhCCCCCCCcEEEEEe
Q 013976          157 TRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTG  234 (432)
Q Consensus       157 ~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~-i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~  234 (432)
                      +.+++..+...+.++++.||++| ++|+.+.+.+.+++..+.+. +.|+.+|++.    ..+++.|+++..  |+++++.
T Consensus         6 ~~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d~----~~~~~~~~v~~~--Pt~~~~~   79 (102)
T cd02948           6 NQEEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEADT----IDTLKRYRGKCE--PTFLFYK   79 (102)
T ss_pred             CHHHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCCC----HHHHHHcCCCcC--cEEEEEE
Confidence            55667777777888899999999 99999999999999999854 7899999883    367999999998  9998886


Q ss_pred             CCCCceecCCCCCCHHHHHHHHHH
Q 013976          235 NDDAKKHILDGELTLDKIKTFGED  258 (432)
Q Consensus       235 ~~~~~~y~~~~~~~~~~i~~fi~~  258 (432)
                      +++ ......| .+.+.+.++|+.
T Consensus        80 ~g~-~~~~~~G-~~~~~~~~~i~~  101 (102)
T cd02948          80 NGE-LVAVIRG-ANAPLLNKTITE  101 (102)
T ss_pred             CCE-EEEEEec-CChHHHHHHHhh
Confidence            543 3344456 588899988875

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=98.68  E-value=1e-07  Score=76.41  Aligned_cols=102  Identities=10%  Similarity=0.039  Sum_probs=76.9

Q ss_pred             Cchhhhc--cCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeC
Q 013976          159 ENAPSVF--ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGN  235 (432)
Q Consensus       159 ~~~~~~~--~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~  235 (432)
                      +.+++.+  ..++++++-|+++| ++|+.+.+.+.++|+++.+.+.|+.||+++   ++++.+.|+|... +|++.++.+
T Consensus        12 ~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe---~~dla~~y~I~~~-~t~~~ffk~   87 (142)
T PLN00410         12 WAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITE---VPDFNTMYELYDP-CTVMFFFRN   87 (142)
T ss_pred             HHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCC---CHHHHHHcCccCC-CcEEEEEEC
Confidence            3444443  24456778899999 999999999999999999999999999998   6799999999854 456657766


Q ss_pred             CCCceecCCC--------CCCHHHHHHHHHHHhcCCc
Q 013976          236 DDAKKHILDG--------ELTLDKIKTFGEDFLEGKL  264 (432)
Q Consensus       236 ~~~~~y~~~~--------~~~~~~i~~fi~~~~~g~l  264 (432)
                      ++...-...|        ..+.++|.+-++.++.|-.
T Consensus        88 g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~a~  124 (142)
T PLN00410         88 KHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGAR  124 (142)
T ss_pred             CeEEEEEecccccccccccCCHHHHHHHHHHHHHHHh
Confidence            5433334455        3677788888877776543

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=98.67  E-value=2.2e-07  Score=78.98  Aligned_cols=101  Identities=19%  Similarity=0.309  Sum_probs=76.1

Q ss_pred             ceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCcc----------------
Q 013976          280 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE----------------  343 (432)
Q Consensus       280 ~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~----------------  343 (432)
                      .+..++++.+.-.. -.+++++|.||++||..|+...+.+.+++..+.+. ++.++.++++...                
T Consensus        45 ~~~~~~g~~~~l~~-~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~-~~~vi~i~~d~~~~~~~~~~~~~~~~~~~  122 (173)
T PRK03147         45 VLTDLEGKKIELKD-LKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEK-GVEIIAVNVDETELAVKNFVNRYGLTFPV  122 (173)
T ss_pred             EeecCCCCEEeHHH-cCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcC-CeEEEEEEcCCCHHHHHHHHHHhCCCceE
Confidence            34555665554322 24578999999999999999999999999999863 5788888875331                


Q ss_pred             ------c--ccCCCCCCceEEEEe-CCCcccCceeccCCCCHHHHHHHHHh
Q 013976          344 ------H--HRAKSDGFPTILFFP-AGNKSFDPINVDVDRTVVALYKFLKK  385 (432)
Q Consensus       344 ------~--~~~~i~~~P~i~~~~-~g~~~~~~~~y~g~~~~~~l~~fi~~  385 (432)
                            .  ..+++..+|+++++. +|..+.   .+.|..+.+.+.+++.+
T Consensus       123 ~~d~~~~~~~~~~v~~~P~~~lid~~g~i~~---~~~g~~~~~~l~~~l~~  170 (173)
T PRK03147        123 AIDKGRQVIDAYGVGPLPTTFLIDKDGKVVK---VITGEMTEEQLEEYLEK  170 (173)
T ss_pred             EECCcchHHHHcCCCCcCeEEEECCCCcEEE---EEeCCCCHHHHHHHHHH
Confidence                  1  468999999999995 454432   67888999999998875

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A

Probab=98.67  E-value=8.5e-08  Score=72.67  Aligned_cols=66  Identities=24%  Similarity=0.498  Sum_probs=51.1

Q ss_pred             CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc---------------------------ccCCC
Q 013976          297 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH---------------------------HRAKS  349 (432)
Q Consensus       297 ~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~---------------------------~~~~i  349 (432)
                      +++++|+||++||.+|+...|.+.++.+.+++..++.++.|+++....                           ..+++
T Consensus         1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i   80 (95)
T PF13905_consen    1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI   80 (95)
T ss_dssp             TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence            478999999999999999999999999999944478888888876421                           12388


Q ss_pred             CCCceEEEEeCCC
Q 013976          350 DGFPTILFFPAGN  362 (432)
Q Consensus       350 ~~~P~i~~~~~g~  362 (432)
                      .++|+++++.++.
T Consensus        81 ~~iP~~~lld~~G   93 (95)
T PF13905_consen   81 NGIPTLVLLDPDG   93 (95)
T ss_dssp             TSSSEEEEEETTS
T ss_pred             CcCCEEEEECCCC
Confidence            8999999985543

...

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=98.65  E-value=1.4e-07  Score=73.99  Aligned_cols=98  Identities=14%  Similarity=0.165  Sum_probs=75.3

Q ss_pred             CceeecCCCchhhhccCC---CcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCC
Q 013976          151 PLVTIFTRENAPSVFESP---IKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEA  226 (432)
Q Consensus       151 p~v~~l~~~~~~~~~~~~---~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~  226 (432)
                      ..+.+++.+++...+...   .++++.||++| +.|+.+.+.++++|.++.+ +.|+.+|+++   . .+++.|++... 
T Consensus         4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~-v~f~~vd~~~---~-~l~~~~~i~~~-   77 (113)
T cd02957           4 GEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPE-TKFVKINAEK---A-FLVNYLDIKVL-   77 (113)
T ss_pred             ceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC-cEEEEEEchh---h-HHHHhcCCCcC-
Confidence            446777888887665443   67788899999 9999999999999999976 8999999987   4 78999999988 


Q ss_pred             CcEEEEEeCCCCceecCCC-------CCCHHHHHHHH
Q 013976          227 PKVLAYTGNDDAKKHILDG-------ELTLDKIKTFG  256 (432)
Q Consensus       227 ~P~i~i~~~~~~~~y~~~~-------~~~~~~i~~fi  256 (432)
                       |+++++.+++. ...+.|       ..+.+.|.+|+
T Consensus        78 -Pt~~~f~~G~~-v~~~~G~~~~~~~~~~~~~l~~~l  112 (113)
T cd02957          78 -PTLLVYKNGEL-IDNIVGFEELGGDDFTTEDLEKFL  112 (113)
T ss_pred             -CEEEEEECCEE-EEEEecHHHhCCCCCCHHHHHHHh
Confidence             99999976642 222222       35666666654

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=98.65  E-value=8.9e-08  Score=73.65  Aligned_cols=95  Identities=15%  Similarity=0.127  Sum_probs=71.3

Q ss_pred             CchhhhccC--CCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeC
Q 013976          159 ENAPSVFES--PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGN  235 (432)
Q Consensus       159 ~~~~~~~~~--~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~  235 (432)
                      +++...+..  ++++++.||++| ++|+.+.+.+.++++++ +.+.|+.+|+++......+++.|+|.+.  |+++++.+
T Consensus         4 ~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~l~~~~~V~~~--Pt~~~~~~   80 (103)
T cd02985           4 EELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTMELCRREKIIEV--PHFLFYKD   80 (103)
T ss_pred             HHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHHHHHHcCCCcC--CEEEEEeC
Confidence            344444432  667888899999 99999999999999999 5699999998873212478899999998  99988854


Q ss_pred             CCCceecCCCCCCHHHHHHHHHH
Q 013976          236 DDAKKHILDGELTLDKIKTFGED  258 (432)
Q Consensus       236 ~~~~~y~~~~~~~~~~i~~fi~~  258 (432)
                      + .....+.| .+.+.|.+-+..
T Consensus        81 G-~~v~~~~G-~~~~~l~~~~~~  101 (103)
T cd02985          81 G-EKIHEEEG-IGPDELIGDVLY  101 (103)
T ss_pred             C-eEEEEEeC-CCHHHHHHHHHh
Confidence            4 34455667 566777666543

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=98.64  E-value=1.2e-07  Score=76.66  Aligned_cols=67  Identities=27%  Similarity=0.504  Sum_probs=53.1

Q ss_pred             CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCC-CCEEEEEEeCCCcc--------------------------c-ccC
Q 013976          296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV-DSIVIAKMDGTTNE--------------------------H-HRA  347 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~-~~~~~~~id~~~~~--------------------------~-~~~  347 (432)
                      .++.+||.||++||++|+...|.+.+++..+++. .++.+..++++.+.                          . ..+
T Consensus        16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~   95 (132)
T cd02964          16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF   95 (132)
T ss_pred             CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence            3689999999999999999999999999998764 35667666665432                          1 247


Q ss_pred             CCCCCceEEEEeCCC
Q 013976          348 KSDGFPTILFFPAGN  362 (432)
Q Consensus       348 ~i~~~P~i~~~~~g~  362 (432)
                      ++.++|+++++.++.
T Consensus        96 ~v~~iPt~~lid~~G  110 (132)
T cd02964          96 KVEGIPTLVVLKPDG  110 (132)
T ss_pred             CCCCCCEEEEECCCC
Confidence            899999999996443

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=98.64  E-value=2.4e-07  Score=88.47  Aligned_cols=225  Identities=14%  Similarity=0.143  Sum_probs=135.9

Q ss_pred             ceeecCCCchhhhc-cCCCcceEEEEEeC-cchhhhHHHHHHHHHhcc---CceEEEEEecCCcccccchhhhhCCCCCC
Q 013976          152 LVTIFTRENAPSVF-ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFK---GKLIFVYVQMDNEDVGKPVSEYFGITGEA  226 (432)
Q Consensus       152 ~v~~l~~~~~~~~~-~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~---~~i~f~~vd~~~~~~~~~l~~~~~i~~~~  226 (432)
                      .|.+++.++|...+ .+.+..+|-||++| ++|..+.+.|+++|+...   .-+.++.|||..+. +..+|+.|+|+.+ 
T Consensus        40 ~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~-N~~lCRef~V~~~-  117 (606)
T KOG1731|consen   40 PIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEE-NVKLCREFSVSGY-  117 (606)
T ss_pred             CeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchh-hhhhHhhcCCCCC-
Confidence            47889999998755 44446788899999 999999999999999876   45899999999987 9999999999999 


Q ss_pred             CcEEEEEeCCCCc-e--ecCCCCCCHHHHHHHHHHHhcCCcCccccCCCCCCCCCCceEEEecccchh---hhhcCCCcE
Q 013976          227 PKVLAYTGNDDAK-K--HILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDE---IVLDESKDV  300 (432)
Q Consensus       227 ~P~i~i~~~~~~~-~--y~~~~~~~~~~i~~fi~~~~~g~l~~~~~se~~p~~~~~~v~~l~~~~~~~---~~~~~~~~~  300 (432)
                       |++.++..+... .  -.+.|.....++..++..-+...--    .+.-| .|...-......++.+   .+......+
T Consensus       118 -Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la~~~~----~~~~~-~WP~f~pl~~~~~~~~l~~~~~~~~~yv  191 (606)
T KOG1731|consen  118 -PTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLAEEDA----QNRYP-SWPNFDPLKDTTTLEELDEGISTTANYV  191 (606)
T ss_pred             -ceeeecCCccccCcCCCcccCCcchhhHHHHHHHHHHHHHh----hhcCC-CCCCCCCCCCcchHHHHhccccccccee
Confidence             999999766322 1  1234455566666666554432211    11111 2211111111122222   121122344


Q ss_pred             EEEE-eCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEE-eCCCcccccCCCCCCceEEEEeCCCcccCceeccCCCCHHH
Q 013976          301 LLEI-YAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKM-DGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVA  378 (432)
Q Consensus       301 lv~f-~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~i-d~~~~~~~~~~i~~~P~i~~~~~g~~~~~~~~y~g~~~~~~  378 (432)
                      .+.| ..+.-       --|..+-..+... .+.+..+ |......-.+.++..|..++|++|...  + .+..+.+.+.
T Consensus       192 Aiv~e~~~s~-------lg~~~~l~~l~~~-~v~vr~~~d~q~~~~~~l~~~~~~~~llfrnG~~q--~-l~~~~~s~~~  260 (606)
T KOG1731|consen  192 AIVFETEPSD-------LGWANLLNDLPSK-QVGVRARLDTQNFPLFGLKPDNFPLALLFRNGEQQ--P-LWPSSSSRSA  260 (606)
T ss_pred             EEEEecCCcc-------cHHHHHHhhccCC-CcceEEEecchhccccccCCCCchhhhhhcCCccc--c-cccccccHHH
Confidence            4444 22221       1244444444332 3333333 433444445999999999999999874  2 3334455556


Q ss_pred             HHHHHHhcCCCCCcccC
Q 013976          379 LYKFLKKNASIPFKIQK  395 (432)
Q Consensus       379 l~~fi~~~~~~~~~~~~  395 (432)
                      ..+-|.+.++.+.....
T Consensus       261 y~~~I~~~lg~~~~a~~  277 (606)
T KOG1731|consen  261 YVKKIDDLLGDKNEASG  277 (606)
T ss_pred             HHHHHHHHhcCccccCC
Confidence            66666666655444433

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=98.63  E-value=1.3e-07  Score=70.21  Aligned_cols=72  Identities=15%  Similarity=0.112  Sum_probs=58.9

Q ss_pred             cEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCcccCceeccCCCCH
Q 013976          299 DVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTV  376 (432)
Q Consensus       299 ~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~~~g~~~~~~~~y~g~~~~  376 (432)
                      ..+..|+++||.+|..+.+.+.+++..+.   ++.+..+|.++...  .+++|.++|++++  +|..     .+.|..+.
T Consensus        14 v~i~~F~~~~C~~C~~~~~~~~~l~~~~~---~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~-----~~~G~~~~   83 (89)
T cd03026          14 INFETYVSLSCHNCPDVVQALNLMAVLNP---NIEHEMIDGALFQDEVEERGIMSVPAIFL--NGEL-----FGFGRMTL   83 (89)
T ss_pred             EEEEEEECCCCCCcHHHHHHHHHHHHHCC---CceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEE-----EEeCCCCH
Confidence            35888999999999999999999998764   49999999888765  7999999999975  6654     45686666


Q ss_pred             HHHH
Q 013976          377 VALY  380 (432)
Q Consensus       377 ~~l~  380 (432)
                      +.++
T Consensus        84 ~e~~   87 (89)
T cd03026          84 EEIL   87 (89)
T ss_pred             HHHh
Confidence            6654

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=98.62  E-value=1.3e-07  Score=76.29  Aligned_cols=68  Identities=28%  Similarity=0.516  Sum_probs=53.3

Q ss_pred             CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCC-CCEEEEEEeCCCcc-------------------------c-ccCC
Q 013976          296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV-DSIVIAKMDGTTNE-------------------------H-HRAK  348 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~-~~~~~~~id~~~~~-------------------------~-~~~~  348 (432)
                      .++++||+||++||.+|+...|.+.++...+++. .++.++.++++.+.                         . ..++
T Consensus        17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (131)
T cd03009          17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK   96 (131)
T ss_pred             CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence            3578999999999999999999999999988753 35666666655331                         1 3689


Q ss_pred             CCCCceEEEEe-CCCc
Q 013976          349 SDGFPTILFFP-AGNK  363 (432)
Q Consensus       349 i~~~P~i~~~~-~g~~  363 (432)
                      +.++|+++++. +|+.
T Consensus        97 v~~~P~~~lid~~G~i  112 (131)
T cd03009          97 IEGIPTLIILDADGEV  112 (131)
T ss_pred             CCCCCEEEEECCCCCE
Confidence            99999999996 5543

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=98.62  E-value=2.2e-07  Score=72.83  Aligned_cols=99  Identities=14%  Similarity=0.231  Sum_probs=75.3

Q ss_pred             ceeecCCCchhhhccCC-CcceEEEEEeC-cchhhhHHHHHHHHHhccC---ceEEEEEecCCcccccchhhhhCCCCCC
Q 013976          152 LVTIFTRENAPSVFESP-IKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG---KLIFVYVQMDNEDVGKPVSEYFGITGEA  226 (432)
Q Consensus       152 ~v~~l~~~~~~~~~~~~-~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~---~i~f~~vd~~~~~~~~~l~~~~~i~~~~  226 (432)
                      .+.+++.+++...+.++ +++++.||++| +.|+.+.+.|.+++.++++   .+.|+.+||.... +..+++.|+++.+ 
T Consensus         2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~-~~~~~~~~~i~~~-   79 (114)
T cd02992           2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEE-NVALCRDFGVTGY-   79 (114)
T ss_pred             CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchh-hHHHHHhCCCCCC-
Confidence            36788899998876544 46788899999 9999999999999998863   5999999987543 5678999999988 


Q ss_pred             CcEEEEEeCCCCce---ecCCCC-CCHHHHH
Q 013976          227 PKVLAYTGNDDAKK---HILDGE-LTLDKIK  253 (432)
Q Consensus       227 ~P~i~i~~~~~~~~---y~~~~~-~~~~~i~  253 (432)
                       |+++++..+....   -.++|. +..+++.
T Consensus        80 -Pt~~lf~~~~~~~~~~~~~~~~~~~~~~~~  109 (114)
T cd02992          80 -PTLRYFPPFSKEATDGLKQEGPERDVNELR  109 (114)
T ss_pred             -CEEEEECCCCccCCCCCcccCCccCHHHHH
Confidence             9999997665211   234443 5555553

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=98.61  E-value=1.5e-07  Score=77.06  Aligned_cols=83  Identities=16%  Similarity=0.245  Sum_probs=68.0

Q ss_pred             ceeecCCCchhhhccC--CCcceEEEEEeC-cchhhhHHHHHHHHHhccC-ceEEEEEecCCcccccchhhhhCCCC---
Q 013976          152 LVTIFTRENAPSVFES--PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNEDVGKPVSEYFGITG---  224 (432)
Q Consensus       152 ~v~~l~~~~~~~~~~~--~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~-~i~f~~vd~~~~~~~~~l~~~~~i~~---  224 (432)
                      .+.+++++++......  +.++++.||++| ++|+.+.+.+.++|+++.+ ++.|+.||+++   ++.+++.|+|..   
T Consensus        29 ~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~---~~~la~~~~V~~~~~  105 (152)
T cd02962          29 HIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGR---FPNVAEKFRVSTSPL  105 (152)
T ss_pred             ccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCC---CHHHHHHcCceecCC
Confidence            4677888888776533  346788899999 9999999999999999985 59999999998   568999999977   


Q ss_pred             -CCCcEEEEEeCCC
Q 013976          225 -EAPKVLAYTGNDD  237 (432)
Q Consensus       225 -~~~P~i~i~~~~~  237 (432)
                       .+.|+++++..++
T Consensus       106 v~~~PT~ilf~~Gk  119 (152)
T cd02962         106 SKQLPTIILFQGGK  119 (152)
T ss_pred             cCCCCEEEEEECCE
Confidence             1349999987554

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=98.59  E-value=2.4e-07  Score=79.50  Aligned_cols=86  Identities=21%  Similarity=0.314  Sum_probs=65.0

Q ss_pred             cCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc-------------------------ccCCC
Q 013976          295 DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-------------------------HRAKS  349 (432)
Q Consensus       295 ~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-------------------------~~~~i  349 (432)
                      ..+++++|.||++||++|+...|.+.+++..     ++.++.++.+++..                         ..+++
T Consensus        66 ~~gk~vvv~FwatwC~~C~~e~p~l~~l~~~-----~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv  140 (185)
T PRK15412         66 TQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ-----GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGV  140 (185)
T ss_pred             cCCCEEEEEEECCCCHHHHHHHHHHHHHHHc-----CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCC
Confidence            3578999999999999999999999988642     46666676543210                         14688


Q ss_pred             CCCceEEEE-eCCCcccCceeccCCCCHHHHHHHHHhcCC
Q 013976          350 DGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNAS  388 (432)
Q Consensus       350 ~~~P~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  388 (432)
                      .++|+.+++ ++|....   .+.|..+.+.+.++|+....
T Consensus       141 ~~~P~t~vid~~G~i~~---~~~G~~~~~~l~~~i~~~~~  177 (185)
T PRK15412        141 YGAPETFLIDGNGIIRY---RHAGDLNPRVWESEIKPLWE  177 (185)
T ss_pred             CcCCeEEEECCCceEEE---EEecCCCHHHHHHHHHHHHH
Confidence            999987777 6776544   67888899988888887664

>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

Probab=98.57  E-value=2.6e-07  Score=78.39  Aligned_cols=86  Identities=22%  Similarity=0.298  Sum_probs=64.2

Q ss_pred             cCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCc-----------------------cc--ccCCC
Q 013976          295 DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN-----------------------EH--HRAKS  349 (432)
Q Consensus       295 ~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-----------------------~~--~~~~i  349 (432)
                      ..+++++|+||++||.+|+.+.|.+.+++..     ++.++.++.+..                       ..  ..+++
T Consensus        61 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~-----~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v  135 (173)
T TIGR00385        61 IQGKPVLLNVWASWCPPCRAEHPYLNELAKD-----GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGV  135 (173)
T ss_pred             cCCCEEEEEEECCcCHHHHHHHHHHHHHHHc-----CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCC
Confidence            3568999999999999999999999888653     355555553211                       01  35688


Q ss_pred             CCCceEEEE-eCCCcccCceeccCCCCHHHHHHHHHhcCC
Q 013976          350 DGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNAS  388 (432)
Q Consensus       350 ~~~P~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  388 (432)
                      .++|+.+++ ++|+.+.   .+.|..+.+.+.+++.++.+
T Consensus       136 ~~~P~~~~id~~G~i~~---~~~G~~~~~~l~~~l~~~~~  172 (173)
T TIGR00385       136 YGAPETFLVDGNGVILY---RHAGPLNNEVWTEGFLPAME  172 (173)
T ss_pred             eeCCeEEEEcCCceEEE---EEeccCCHHHHHHHHHHHhh
Confidence            899977666 6776554   67788999999999998763

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=98.56  E-value=3.1e-07  Score=69.83  Aligned_cols=87  Identities=20%  Similarity=0.323  Sum_probs=72.4

Q ss_pred             ccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCceecC
Q 013976          165 FESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHIL  243 (432)
Q Consensus       165 ~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~  243 (432)
                      ...+++++++|+++| +.|+.+.+.+.++++++.+++.++.+|+++   .+.+++.+++.+.  |+++++.++ .....+
T Consensus        10 ~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~---~~~l~~~~~v~~v--Pt~~i~~~g-~~v~~~   83 (97)
T cd02949          10 HESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDE---DQEIAEAAGIMGT--PTVQFFKDK-ELVKEI   83 (97)
T ss_pred             HhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCC---CHHHHHHCCCeec--cEEEEEECC-eEEEEE
Confidence            345556677888899 999999999999999999889999999987   5588999999887  999999654 345567


Q ss_pred             CCCCCHHHHHHHHH
Q 013976          244 DGELTLDKIKTFGE  257 (432)
Q Consensus       244 ~~~~~~~~i~~fi~  257 (432)
                      .|..+.+.+.+|++
T Consensus        84 ~g~~~~~~~~~~l~   97 (97)
T cd02949          84 SGVKMKSEYREFIE   97 (97)
T ss_pred             eCCccHHHHHHhhC
Confidence            88888999888863

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

Probab=98.55  E-value=2.1e-07  Score=75.48  Aligned_cols=68  Identities=19%  Similarity=0.330  Sum_probs=53.0

Q ss_pred             CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCC------CCEEEEEEeCCCccc-------------------------
Q 013976          296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV------DSIVIAKMDGTTNEH-------------------------  344 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~------~~~~~~~id~~~~~~-------------------------  344 (432)
                      .+++++|.|||+||++|+..+|.+.++.+.+++.      .++.++.|+.+.+..                         
T Consensus        24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~  103 (146)
T cd03008          24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE  103 (146)
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence            4689999999999999999999999998877642      258888888775321                         


Q ss_pred             --ccCCCCCCceEEEEe-CCCc
Q 013976          345 --HRAKSDGFPTILFFP-AGNK  363 (432)
Q Consensus       345 --~~~~i~~~P~i~~~~-~g~~  363 (432)
                        ..|++.++|+.+++. +|+.
T Consensus       104 l~~~y~v~~iPt~vlId~~G~V  125 (146)
T cd03008         104 LEAQFSVEELPTVVVLKPDGDV  125 (146)
T ss_pred             HHHHcCCCCCCEEEEECCCCcE
Confidence              135788999999995 4443

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=98.55  E-value=4.4e-07  Score=70.96  Aligned_cols=90  Identities=14%  Similarity=0.136  Sum_probs=73.3

Q ss_pred             cCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCC-CceecC
Q 013976          166 ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDD-AKKHIL  243 (432)
Q Consensus       166 ~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~-~~~y~~  243 (432)
                      ..+...++.|+++| +.|+.+.+.+++++..+ +++.|..+|.+.   .+.++..|++...  |+++++.++. .....+
T Consensus        20 ~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d~---~~~l~~~~~v~~v--Pt~~i~~~g~~~~~~~~   93 (113)
T cd02975          20 KNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFDE---DKEKAEKYGVERV--PTTIFLQDGGKDGGIRY   93 (113)
T ss_pred             CCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCCc---CHHHHHHcCCCcC--CEEEEEeCCeecceEEE
Confidence            44445556667889 99999999999999987 669999999987   5689999999998  9999987643 223357


Q ss_pred             CCCCCHHHHHHHHHHHhc
Q 013976          244 DGELTLDKIKTFGEDFLE  261 (432)
Q Consensus       244 ~~~~~~~~i~~fi~~~~~  261 (432)
                      .|..+...+.+||+.+++
T Consensus        94 ~G~~~~~el~~~i~~i~~  111 (113)
T cd02975          94 YGLPAGYEFASLIEDIVR  111 (113)
T ss_pred             EecCchHHHHHHHHHHHh
Confidence            788888999999998865

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=98.55  E-value=3e-07  Score=72.07  Aligned_cols=67  Identities=25%  Similarity=0.522  Sum_probs=55.8

Q ss_pred             CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCc-----------------------cc--ccCCCCC
Q 013976          297 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN-----------------------EH--HRAKSDG  351 (432)
Q Consensus       297 ~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-----------------------~~--~~~~i~~  351 (432)
                      +++++|+||++||+.|+...+.+.++...+.. .++.++.++++.+                       ..  ..+++.+
T Consensus        19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (116)
T cd02966          19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKD-DGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRG   97 (116)
T ss_pred             CCEEEEEeecccChhHHHHhHHHHHHHHHhCC-CCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCc
Confidence            68999999999999999999999999999973 3699999998874                       11  4678999


Q ss_pred             CceEEEEe-CCCcc
Q 013976          352 FPTILFFP-AGNKS  364 (432)
Q Consensus       352 ~P~i~~~~-~g~~~  364 (432)
                      +|+++++. +|..+
T Consensus        98 ~P~~~l~d~~g~v~  111 (116)
T cd02966          98 LPTTFLIDRDGRIR  111 (116)
T ss_pred             cceEEEECCCCcEE
Confidence            99999994 55443

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=98.55  E-value=2.8e-07  Score=70.12  Aligned_cols=91  Identities=20%  Similarity=0.217  Sum_probs=70.3

Q ss_pred             CchhhhccCC--CcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeC
Q 013976          159 ENAPSVFESP--IKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGN  235 (432)
Q Consensus       159 ~~~~~~~~~~--~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~  235 (432)
                      +++...+...  +++++.||++| ..|+.+.+.+.+++.++...+.|+.+|+..   .+.+++.|++...  |+++++..
T Consensus         3 ~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~---~~~~~~~~~i~~~--Pt~~~~~~   77 (97)
T cd02984           3 EEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEE---LPEISEKFEITAV--PTFVFFRN   77 (97)
T ss_pred             HHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEcccc---CHHHHHhcCCccc--cEEEEEEC
Confidence            3445554444  67788899999 999999999999999987789999999987   5688999999887  99999865


Q ss_pred             CCCceecCCCCCCHHHHHHHH
Q 013976          236 DDAKKHILDGELTLDKIKTFG  256 (432)
Q Consensus       236 ~~~~~y~~~~~~~~~~i~~fi  256 (432)
                      +. ....+.| .+.+.|.+.|
T Consensus        78 g~-~~~~~~g-~~~~~l~~~~   96 (97)
T cd02984          78 GT-IVDRVSG-ADPKELAKKV   96 (97)
T ss_pred             CE-EEEEEeC-CCHHHHHHhh
Confidence            43 2333444 5677776655

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=98.53  E-value=2.6e-07  Score=74.16  Aligned_cols=76  Identities=21%  Similarity=0.345  Sum_probs=55.8

Q ss_pred             CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCC-----------------------ccc--ccCCCCC
Q 013976          297 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT-----------------------NEH--HRAKSDG  351 (432)
Q Consensus       297 ~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~-----------------------~~~--~~~~i~~  351 (432)
                      +++++|.||++||.+|+...|.+.++++.+.    +.++.++.+.                       +..  ..+++.+
T Consensus        25 gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~----~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~  100 (127)
T cd03010          25 GKPYLLNVWASWCAPCREEHPVLMALARQGR----VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYG  100 (127)
T ss_pred             CCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC----cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCC
Confidence            6789999999999999999999999987752    5555555321                       111  3579999


Q ss_pred             CceEEEE-eCCCcccCceeccCCCCHHHH
Q 013976          352 FPTILFF-PAGNKSFDPINVDVDRTVVAL  379 (432)
Q Consensus       352 ~P~i~~~-~~g~~~~~~~~y~g~~~~~~l  379 (432)
                      +|+.+++ ++|..+.   .+.|..+.+.|
T Consensus       101 ~P~~~~ld~~G~v~~---~~~G~~~~~~~  126 (127)
T cd03010         101 VPETFLIDGDGIIRY---KHVGPLTPEVW  126 (127)
T ss_pred             CCeEEEECCCceEEE---EEeccCChHhc
Confidence            9966666 6776544   67787776643

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.51  E-value=1.7e-07  Score=78.21  Aligned_cols=87  Identities=20%  Similarity=0.310  Sum_probs=71.9

Q ss_pred             CCceEEE-ecccchhhhhcC-CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCC---
Q 013976          278 DGDVKIV-VGNNFDEIVLDE-SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSD---  350 (432)
Q Consensus       278 ~~~v~~l-~~~~~~~~~~~~-~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~---  350 (432)
                      .+.++.+ +++.+++.+..+ .+.|+|.|++.|...|..+.|.|.+|+.+|..+ .++|+++|+...++  .+|.|+   
T Consensus       123 pe~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~-~lkFGkvDiGrfpd~a~kfris~s~  201 (265)
T KOG0914|consen  123 PETIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNN-LLKFGKVDIGRFPDVAAKFRISLSP  201 (265)
T ss_pred             chheeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCC-CCcccceeeccCcChHHheeeccCc
Confidence            3457888 556666666333 367999999999999999999999999999874 89999999998887  566554   


Q ss_pred             ---CCceEEEEeCCCccc
Q 013976          351 ---GFPTILFFPAGNKSF  365 (432)
Q Consensus       351 ---~~P~i~~~~~g~~~~  365 (432)
                         ..||+++|..|+.+.
T Consensus       202 ~srQLPT~ilFq~gkE~~  219 (265)
T KOG0914|consen  202 GSRQLPTYILFQKGKEVS  219 (265)
T ss_pred             ccccCCeEEEEccchhhh
Confidence               789999999998764

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=98.51  E-value=4.3e-07  Score=72.40  Aligned_cols=90  Identities=26%  Similarity=0.362  Sum_probs=62.4

Q ss_pred             EecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCC---------------------Cc
Q 013976          284 VVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT---------------------TN  342 (432)
Q Consensus       284 l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~---------------------~~  342 (432)
                      +.++.+..... .+++++|+||++||++|..+.|.+.+++..+.    +..+.+|-.                     .+
T Consensus         8 ~~g~~~~~~~~-~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~   82 (123)
T cd03011           8 LDGEQFDLESL-SGKPVLVYFWATWCPVCRFTSPTVNQLAADYP----VVSVALRSGDDGAVARFMQKKGYGFPVINDPD   82 (123)
T ss_pred             CCCCEeeHHHh-CCCEEEEEEECCcChhhhhhChHHHHHHhhCC----EEEEEccCCCHHHHHHHHHHcCCCccEEECCC
Confidence            44444444433 34899999999999999999999999987742    222222211                     11


Q ss_pred             c-c-ccCCCCCCceEEEEeCCCcccCceeccCCCCHHHHHH
Q 013976          343 E-H-HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYK  381 (432)
Q Consensus       343 ~-~-~~~~i~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~  381 (432)
                      . . ..+++.++|+++++.+|+...   .+.|..+.+.|.+
T Consensus        83 ~~~~~~~~i~~~P~~~vid~~gi~~---~~~g~~~~~~~~~  120 (123)
T cd03011          83 GVISARWGVSVTPAIVIVDPGGIVF---VTTGVTSEWGLRL  120 (123)
T ss_pred             cHHHHhCCCCcccEEEEEcCCCeEE---EEeccCCHHHHHh
Confidence            1 1 478999999999997666433   6778888888765

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1

Probab=98.49  E-value=1e-06  Score=67.41  Aligned_cols=91  Identities=14%  Similarity=0.048  Sum_probs=70.0

Q ss_pred             CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCceecC--
Q 013976          167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHIL--  243 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~--  243 (432)
                      .++.+++-|+++| ++|+.+.+.+.++|.++.+.+.|..||.++   .+++.+.|+|...  |+++++.+++.-...+  
T Consensus        13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDe---v~dva~~y~I~am--Ptfvffkngkh~~~d~gt   87 (114)
T cd02986          13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDK---VPVYTQYFDISYI--PSTIFFFNGQHMKVDYGS   87 (114)
T ss_pred             CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccc---cHHHHHhcCceeC--cEEEEEECCcEEEEecCC
Confidence            4566778899999 999999999999999998889999999998   6799999999877  9998886554222222  


Q ss_pred             ------CCC-CCHHHHHHHHHHHhcC
Q 013976          244 ------DGE-LTLDKIKTFGEDFLEG  262 (432)
Q Consensus       244 ------~~~-~~~~~i~~fi~~~~~g  262 (432)
                            ++- -+.+.+..-++-...|
T Consensus        88 ~~~~k~~~~~~~k~~~idi~e~~yr~  113 (114)
T cd02986          88 PDHTKFVGSFKTKQDFIDLIEVIYRG  113 (114)
T ss_pred             CCCcEEEEEcCchhHHHHHHHHHHcC
Confidence                  222 3457777777665543

Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.

>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=98.49  E-value=6.3e-08  Score=81.98  Aligned_cols=100  Identities=23%  Similarity=0.398  Sum_probs=89.9

Q ss_pred             ceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEE
Q 013976          280 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILF  357 (432)
Q Consensus       280 ~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~  357 (432)
                      .++.++.+|+.+.+   ...+++.|++|||..|+...+.|...|.--.+. .+.++.+|++.|+.  -+|-+...|+|+=
T Consensus        25 ~~~~~~eenw~~~l---~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL-~v~va~VDvt~npgLsGRF~vtaLptIYH  100 (248)
T KOG0913|consen   25 KLTRIDEENWKELL---TGEWMIEFGAPWCPSCSDLIPHLENFATVSLDL-GVKVAKVDVTTNPGLSGRFLVTALPTIYH  100 (248)
T ss_pred             eeEEecccchhhhh---chHHHHHhcCCCCccccchHHHHhccCCccCCC-ceeEEEEEEEeccccceeeEEEecceEEE
Confidence            58889999999976   678999999999999999999999998776664 89999999999999  4899999999999


Q ss_pred             EeCCCcccCceeccCCCCHHHHHHHHHhcC
Q 013976          358 FPAGNKSFDPINVDVDRTVVALYKFLKKNA  387 (432)
Q Consensus       358 ~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  387 (432)
                      .+.|.--    +|.|.++..++++|+...-
T Consensus       101 vkDGeFr----rysgaRdk~dfisf~~~r~  126 (248)
T KOG0913|consen  101 VKDGEFR----RYSGARDKNDFISFEEHRE  126 (248)
T ss_pred             eeccccc----cccCcccchhHHHHHHhhh
Confidence            9999764    8999999999999998664

>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus

Probab=98.47  E-value=7.9e-07  Score=70.13  Aligned_cols=69  Identities=16%  Similarity=0.290  Sum_probs=48.1

Q ss_pred             hcCCCcEEEEEeCCCChhhhhhHHHHH---HHHHHhcCCCCEEEEEEeCCCccc-ccCCCCCCceEEEE-eCCCcc
Q 013976          294 LDESKDVLLEIYAPWCGHCQAFEPTYN---KLAKHLRGVDSIVIAKMDGTTNEH-HRAKSDGFPTILFF-PAGNKS  364 (432)
Q Consensus       294 ~~~~~~~lv~f~~~~c~~c~~~~~~~~---~la~~~~~~~~~~~~~id~~~~~~-~~~~i~~~P~i~~~-~~g~~~  364 (432)
                      ...+++++|+|++.||.+|+.+...+.   ++.+.+++  ++..+.++.+..+. .......+|+++|+ ++|..+
T Consensus        20 k~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~--~Fv~V~l~~d~td~~~~~~g~~vPtivFld~~g~vi   93 (130)
T cd02960          20 KKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQE--DFIMLNLVHETTDKNLSPDGQYVPRIMFVDPSLTVR   93 (130)
T ss_pred             HHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHh--CeEEEEEEeccCCCCcCccCcccCeEEEECCCCCCc
Confidence            456799999999999999999987643   34444544  57777777654322 11233689999999 556554

They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=98.46  E-value=1e-06  Score=65.86  Aligned_cols=91  Identities=20%  Similarity=0.280  Sum_probs=73.1

Q ss_pred             chhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCC
Q 013976          160 NAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDA  238 (432)
Q Consensus       160 ~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~  238 (432)
                      ++...+..+.+.+++|+++| ..|+.+.+.+.+++.. .+.+.|+.+|+..   ...+++.+++...  |+++++..++ 
T Consensus         2 ~~~~~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~---~~~~~~~~~v~~~--P~~~~~~~g~-   74 (93)
T cd02947           2 EFEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDE---NPELAEEYGVRSI--PTFLFFKNGK-   74 (93)
T ss_pred             chHHHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCC---ChhHHHhcCcccc--cEEEEEECCE-
Confidence            34444555567788888999 9999999999999999 6669999999997   4588999999887  9999887654 


Q ss_pred             ceecCCCCCCHHHHHHHHH
Q 013976          239 KKHILDGELTLDKIKTFGE  257 (432)
Q Consensus       239 ~~y~~~~~~~~~~i~~fi~  257 (432)
                      ....+.|..+.+.|.+|++
T Consensus        75 ~~~~~~g~~~~~~l~~~i~   93 (93)
T cd02947          75 EVDRVVGADPKEELEEFLE   93 (93)
T ss_pred             EEEEEecCCCHHHHHHHhC
Confidence            4455677778889988873

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.46  E-value=5.8e-07  Score=96.54  Aligned_cols=89  Identities=15%  Similarity=0.294  Sum_probs=71.9

Q ss_pred             CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCC---Cc---------------------cc-----cc
Q 013976          296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT---TN---------------------EH-----HR  346 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~---~~---------------------~~-----~~  346 (432)
                      .++++||.|||+||++|+...|.|+++++.|++. ++.++.+.+.   ..                     +.     ..
T Consensus       419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~-~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~  497 (1057)
T PLN02919        419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQ-PFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWRE  497 (1057)
T ss_pred             CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCC-CeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHh
Confidence            4789999999999999999999999999999863 5777766421   10                     00     36


Q ss_pred             CCCCCCceEEEE-eCCCcccCceeccCCCCHHHHHHHHHhcCC
Q 013976          347 AKSDGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNAS  388 (432)
Q Consensus       347 ~~i~~~P~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  388 (432)
                      +++.++|+++++ ++|+.+.   .+.|....+.|.++|...+.
T Consensus       498 ~~V~~iPt~ilid~~G~iv~---~~~G~~~~~~l~~~l~~~l~  537 (1057)
T PLN02919        498 LGVSSWPTFAVVSPNGKLIA---QLSGEGHRKDLDDLVEAALQ  537 (1057)
T ss_pred             cCCCccceEEEECCCCeEEE---EEecccCHHHHHHHHHHHHH
Confidence            799999999999 7787654   68898899999999988764

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=98.46  E-value=1.1e-06  Score=68.98  Aligned_cols=89  Identities=17%  Similarity=0.124  Sum_probs=69.1

Q ss_pred             hcCCCcEEEEEeCCCChhhhhhHH-HH--HHHHHHhcCCCCEEEEEEeCCCccc----ccCCCCCCceEEEEe--CCCcc
Q 013976          294 LDESKDVLLEIYAPWCGHCQAFEP-TY--NKLAKHLRGVDSIVIAKMDGTTNEH----HRAKSDGFPTILFFP--AGNKS  364 (432)
Q Consensus       294 ~~~~~~~lv~f~~~~c~~c~~~~~-~~--~~la~~~~~~~~~~~~~id~~~~~~----~~~~i~~~P~i~~~~--~g~~~  364 (432)
                      ...+++++|+|+++||..|+.+.. +|  .++.+.++.  ++.+..+|+...+.    ..+++.++|+++++.  +|..+
T Consensus        14 k~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~--~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l   91 (114)
T cd02958          14 KSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE--NFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVL   91 (114)
T ss_pred             HhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh--CEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEe
Confidence            345689999999999999999865 34  235555655  68888899876444    468999999999995  45554


Q ss_pred             cCceeccCCCCHHHHHHHHHhcC
Q 013976          365 FDPINVDVDRTVVALYKFLKKNA  387 (432)
Q Consensus       365 ~~~~~y~g~~~~~~l~~fi~~~~  387 (432)
                      .   .+.|..+.+.+.+.|++..
T Consensus        92 ~---~~~G~~~~~~f~~~L~~~~  111 (114)
T cd02958          92 K---VWSGNITPEDLLSQLIEFL  111 (114)
T ss_pred             E---EEcCCCCHHHHHHHHHHHH
Confidence            3   7889999999999988754

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin

Probab=98.42  E-value=1.2e-06  Score=78.57  Aligned_cols=112  Identities=21%  Similarity=0.297  Sum_probs=81.4

Q ss_pred             CCceEEEec-ccchhhhhcCC--CcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc-ccCCCCCCc
Q 013976          278 DGDVKIVVG-NNFDEIVLDES--KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-HRAKSDGFP  353 (432)
Q Consensus       278 ~~~v~~l~~-~~~~~~~~~~~--~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-~~~~i~~~P  353 (432)
                      -+.|..|+. ..|-+.+....  ..|||.||.+.+..|..+...|..||..|..   ++|.+|.++.... +.|.+..+|
T Consensus       124 fG~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~---vKFvkI~a~~~~~~~~f~~~~LP  200 (265)
T PF02114_consen  124 FGEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE---VKFVKIRASKCPASENFPDKNLP  200 (265)
T ss_dssp             --SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT---SEEEEEEECGCCTTTTS-TTC-S
T ss_pred             CceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc---eEEEEEehhccCcccCCcccCCC
Confidence            467888864 78888774433  4689999999999999999999999999986   9999999877644 789999999


Q ss_pred             eEEEEeCCCcccCceecc---C-CCCHHHHHHHHHhcCCCCCc
Q 013976          354 TILFFPAGNKSFDPINVD---V-DRTVVALYKFLKKNASIPFK  392 (432)
Q Consensus       354 ~i~~~~~g~~~~~~~~y~---g-~~~~~~l~~fi~~~~~~~~~  392 (432)
                      +|++|++|..+.+.+.+.   | ..+...|..||.++.-.+-.
T Consensus       201 tllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~G~l~~k  243 (265)
T PF02114_consen  201 TLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEYGVLPEK  243 (265)
T ss_dssp             EEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTTTSSS--
T ss_pred             EEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHcCCCCCc
Confidence            999999997664444433   2 67789999999999876554

Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.

>PTZ00051 thioredoxin; Provisional

Probab=98.42  E-value=7.9e-07  Score=67.72  Aligned_cols=89  Identities=20%  Similarity=0.257  Sum_probs=69.5

Q ss_pred             CCCchhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeC
Q 013976          157 TRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGN  235 (432)
Q Consensus       157 ~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~  235 (432)
                      +.+.+..+...+.++++.||++| +.|+.+.+.+.+++.++.+ +.|+.+|++.   ...+++.|++.+.  |+++++.+
T Consensus         7 ~~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~vd~~~---~~~~~~~~~v~~~--Pt~~~~~~   80 (98)
T PTZ00051          7 SQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK-MVFVKVDVDE---LSEVAEKENITSM--PTFKVFKN   80 (98)
T ss_pred             CHHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC-cEEEEEECcc---hHHHHHHCCCcee--eEEEEEeC
Confidence            34566667777778889999999 9999999999999999876 8999999987   5688999999888  99988865


Q ss_pred             CCCceecCCCCCCHHHHH
Q 013976          236 DDAKKHILDGELTLDKIK  253 (432)
Q Consensus       236 ~~~~~y~~~~~~~~~~i~  253 (432)
                      ++ ....+.| ...+.|.
T Consensus        81 g~-~~~~~~G-~~~~~~~   96 (98)
T PTZ00051         81 GS-VVDTLLG-ANDEALK   96 (98)
T ss_pred             Ce-EEEEEeC-CCHHHhh
Confidence            43 3344555 3445443

>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=98.41  E-value=1.3e-06  Score=66.72  Aligned_cols=83  Identities=13%  Similarity=0.236  Sum_probs=66.7

Q ss_pred             CCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCceecCCCC
Q 013976          168 PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGE  246 (432)
Q Consensus       168 ~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~  246 (432)
                      ++..++.||++| ++|+.+.|.+.++|.+|.+ +.|+.+|+++   ...+++.++++..  |+++++.+++ ..-.+-| 
T Consensus        21 ~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde---~~~~~~~~~V~~~--PTf~f~k~g~-~~~~~vG-   92 (106)
T KOG0907|consen   21 DKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDE---LEEVAKEFNVKAM--PTFVFYKGGE-EVDEVVG-   92 (106)
T ss_pred             CCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEeccc---CHhHHHhcCceEe--eEEEEEECCE-EEEEEec-
Confidence            356677799999 9999999999999999999 9999999998   5689999999998  9999996664 2223333 


Q ss_pred             CCHHHHHHHHHH
Q 013976          247 LTLDKIKTFGED  258 (432)
Q Consensus       247 ~~~~~i~~fi~~  258 (432)
                      .+.+.+.+.+..
T Consensus        93 a~~~~l~~~i~~  104 (106)
T KOG0907|consen   93 ANKAELEKKIAK  104 (106)
T ss_pred             CCHHHHHHHHHh
Confidence            455566666654

>cd03070 PDI_b_ERp44 PDIb family, ERp44 subfamily, first redox inactive TRX-like domain b; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=98.37  E-value=2.4e-06  Score=62.64  Aligned_cols=83  Identities=17%  Similarity=0.233  Sum_probs=64.3

Q ss_pred             ceeeCCHHHHHHHhhcCCeEEEEEecCCCcchHHHHHHHh-ccCCCceEEEeCcHHHHhHcCCCCCCCCCeEEEEecC-C
Q 013976           48 IYNITTLDEAERVLTSETKVVLGYLNSLVGSESEVLADAS-RLEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKE-T  125 (432)
Q Consensus        48 ~~~i~~~~~l~~~~~~~~~~vv~f~~~~~~~~~~~f~~~a-~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~i~l~~~~-~  125 (432)
                      |.++.+.++|.. +...+-.|||||.+.+.++++.|..+| .+++++.|++..++.. .......    +.+++||+. -
T Consensus         1 Ikef~~~~eL~~-id~~kr~iIgYF~~~~~~eY~~f~kvA~~lr~dC~F~v~~G~~~-~~~~~~~----~~~i~frp~~~   74 (91)
T cd03070           1 IKEFRNLDELNN-VDRSKRNIIGYFESKDSDEYDNFRKVANILRDDCSFLVGFGDVT-KPERPPG----DNIIYFPPGHN   74 (91)
T ss_pred             CceecCHHHHHh-hCcCCceEEEEEcCCCChhHHHHHHHHHHHhhcCeEEEEecccc-ccccCCC----CCeEEECCCCC
Confidence            457888899987 777889999999999999999999999 7899999999886544 2222222    457778876 3


Q ss_pred             CceecccCCCCC
Q 013976          126 EKISYFADGKFD  137 (432)
Q Consensus       126 ~~~~~y~~g~~~  137 (432)
                      .....| .|.++
T Consensus        75 ~~~~~y-~G~~t   85 (91)
T cd03070          75 APDMVY-LGSLT   85 (91)
T ss_pred             CCceEE-ccCCC
Confidence            455788 88874

It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b domain of ERp44 is likely involved in binding to substrates.

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=98.37  E-value=2.4e-06  Score=72.16  Aligned_cols=102  Identities=9%  Similarity=0.087  Sum_probs=78.5

Q ss_pred             CCceeecCC-CchhhhccCC---CcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCC
Q 013976          150 LPLVTIFTR-ENAPSVFESP---IKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITG  224 (432)
Q Consensus       150 ~p~v~~l~~-~~~~~~~~~~---~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~  224 (432)
                      +..+.+++. ++|...+...   .+++|.||++| ++|+.+.+.|.++|.+|.. +.|+.||++.   . .++..|++..
T Consensus        61 ~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~-vkF~kVd~d~---~-~l~~~f~v~~  135 (175)
T cd02987          61 FGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPA-VKFCKIRASA---T-GASDEFDTDA  135 (175)
T ss_pred             CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCC-eEEEEEeccc---h-hhHHhCCCCC
Confidence            456777777 7777665432   26778899999 9999999999999999975 9999999986   3 6889999988


Q ss_pred             CCCcEEEEEeCCCCc--eecC----CCCCCHHHHHHHHHH
Q 013976          225 EAPKVLAYTGNDDAK--KHIL----DGELTLDKIKTFGED  258 (432)
Q Consensus       225 ~~~P~i~i~~~~~~~--~y~~----~~~~~~~~i~~fi~~  258 (432)
                      .  |+++++.++...  ...+    ..+++.+.|..|+..
T Consensus       136 v--PTlllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~  173 (175)
T cd02987         136 L--PALLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVE  173 (175)
T ss_pred             C--CEEEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHh
Confidence            7  999999766421  1111    126888999988865

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A

Probab=98.35  E-value=3.8e-07  Score=66.88  Aligned_cols=64  Identities=27%  Similarity=0.572  Sum_probs=49.9

Q ss_pred             hcCCCcEEEEEeCCCChhhhhhHHHH---HHHHHHhcCCCCEEEEEEeCCCccc-ccCCCCCCceEEEEe
Q 013976          294 LDESKDVLLEIYAPWCGHCQAFEPTY---NKLAKHLRGVDSIVIAKMDGTTNEH-HRAKSDGFPTILFFP  359 (432)
Q Consensus       294 ~~~~~~~lv~f~~~~c~~c~~~~~~~---~~la~~~~~~~~~~~~~id~~~~~~-~~~~i~~~P~i~~~~  359 (432)
                      ...+++++|+|+++||..|+.+...+   .++...+.+  ++.++.+|.+..+. ..+...++|+++++.
T Consensus        14 ~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~--~fv~v~vd~~~~~~~~~~~~~~~P~~~~ld   81 (82)
T PF13899_consen   14 KKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNK--NFVLVKVDVDDEDPNAQFDRQGYPTFFFLD   81 (82)
T ss_dssp             HHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHH--CSEEEEEETTTHHHHHHHHHCSSSEEEEEE
T ss_pred             HHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHC--CEEEEEEEcCCCChhHHhCCccCCEEEEeC
Confidence            35679999999999999999998776   445554655  69999999977665 233336799999985

...

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=98.35  E-value=2e-06  Score=68.82  Aligned_cols=97  Identities=14%  Similarity=0.186  Sum_probs=76.3

Q ss_pred             hccCC-CcceEEEEEeC-cchhhhHHHHH---HHHHhccCceEEEEEecCCcc----------cccchhhhhCCCCCCCc
Q 013976          164 VFESP-IKNQLLLFAVS-NDSEKLLPVFE---EAAKSFKGKLIFVYVQMDNED----------VGKPVSEYFGITGEAPK  228 (432)
Q Consensus       164 ~~~~~-~~~~i~~~~~~-~~~~~~~~~~~---~~a~~~~~~i~f~~vd~~~~~----------~~~~l~~~~~i~~~~~P  228 (432)
                      ...++ ++++|.|+++| +.|+.+.+.+.   .++..+.+.+.++.+|.+...          -...++..|++...  |
T Consensus         9 a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~--P   86 (125)
T cd02951           9 AAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFT--P   86 (125)
T ss_pred             HHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCccc--c
Confidence            34566 78889999999 89999998774   677777777889999887531          02467899999887  9


Q ss_pred             EEEEEeCC-CCceecCCCCCCHHHHHHHHHHHhcC
Q 013976          229 VLAYTGND-DAKKHILDGELTLDKIKTFGEDFLEG  262 (432)
Q Consensus       229 ~i~i~~~~-~~~~y~~~~~~~~~~i~~fi~~~~~g  262 (432)
                      ++++++.+ +.......|..+.+.+.++++.++++
T Consensus        87 t~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~~  121 (125)
T cd02951          87 TVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQEK  121 (125)
T ss_pred             EEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHhh
Confidence            99999876 44455678889999999999998765

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=98.35  E-value=2.5e-06  Score=71.43  Aligned_cols=83  Identities=10%  Similarity=0.132  Sum_probs=62.3

Q ss_pred             EEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCcc----------c-----ccCCC--CCCceEEEE-eCCC
Q 013976          301 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE----------H-----HRAKS--DGFPTILFF-PAGN  362 (432)
Q Consensus       301 lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~----------~-----~~~~i--~~~P~i~~~-~~g~  362 (432)
                      +|.||++||.+|++..|.+.+++++++    +.+.-|+.+...          .     ..+++  .++|+.+++ ++|.
T Consensus        73 lV~FwaswCp~C~~e~P~L~~l~~~~g----~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~  148 (181)
T PRK13728         73 VVLFMQGHCPYCHQFDPVLKQLAQQYG----FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTL  148 (181)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHHHHcC----CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCc
Confidence            778999999999999999999999984    444444544331          0     24563  699999999 5554


Q ss_pred             cccCceeccCCCCHHHHHHHHHhcCCC
Q 013976          363 KSFDPINVDVDRTVVALYKFLKKNASI  389 (432)
Q Consensus       363 ~~~~~~~y~g~~~~~~l~~fi~~~~~~  389 (432)
                      ..  ...+.|..+.+.|.+.|.+.+..
T Consensus       149 i~--~~~~~G~~~~~~L~~~I~~ll~~  173 (181)
T PRK13728        149 EA--LPLLQGATDAAGFMARMDTVLQM  173 (181)
T ss_pred             EE--EEEEECCCCHHHHHHHHHHHHhh
Confidence            42  12588999999999999888765

>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source

Probab=98.33  E-value=1.5e-06  Score=68.27  Aligned_cols=40  Identities=18%  Similarity=0.335  Sum_probs=33.4

Q ss_pred             CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEE
Q 013976          296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKM  337 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~i  337 (432)
                      ++++++|.||++||++|+...|.+.+++..+.+  ++.++.+
T Consensus        20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~--~~~vi~v   59 (114)
T cd02967          20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD--WLDVVLA   59 (114)
T ss_pred             CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC--CcEEEEE
Confidence            368999999999999999999999999988865  4555444

mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.

>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=98.33  E-value=1.4e-06  Score=84.48  Aligned_cols=103  Identities=25%  Similarity=0.392  Sum_probs=77.3

Q ss_pred             EEEecc-cchhhhhcCC-CcEEEEEeCCCChhhhhhHHHHHH-HHHHhcCCCCEEEEEEeCCCccc------ccCCCCCC
Q 013976          282 KIVVGN-NFDEIVLDES-KDVLLEIYAPWCGHCQAFEPTYNK-LAKHLRGVDSIVIAKMDGTTNEH------HRAKSDGF  352 (432)
Q Consensus       282 ~~l~~~-~~~~~~~~~~-~~~lv~f~~~~c~~c~~~~~~~~~-la~~~~~~~~~~~~~id~~~~~~------~~~~i~~~  352 (432)
                      +.++.. ..++.+.+.. ++++|+|||+||-.||.+.+..-. .....+ ..++...+.|.+.|+.      .++++-+.
T Consensus       457 q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~-~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~  535 (569)
T COG4232         457 QPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQA-LQDVVLLQADVTANDPAITALLKRLGVFGV  535 (569)
T ss_pred             hccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHh-cCCeEEEEeeecCCCHHHHHHHHHcCCCCC
Confidence            445554 6677664433 599999999999999999877542 222222 2369999999999887      47899999


Q ss_pred             ceEEEEeCCCcccCceeccCCCCHHHHHHHHHhcC
Q 013976          353 PTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA  387 (432)
Q Consensus       353 P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  387 (432)
                      |++++|+.+..  .+....|..+.+.+.+++++..
T Consensus       536 P~~~ff~~~g~--e~~~l~gf~~a~~~~~~l~~~~  568 (569)
T COG4232         536 PTYLFFGPQGS--EPEILTGFLTADAFLEHLERAA  568 (569)
T ss_pred             CEEEEECCCCC--cCcCCcceecHHHHHHHHHHhc
Confidence            99999975444  2335889999999999998753

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=98.28  E-value=3.3e-06  Score=66.86  Aligned_cols=102  Identities=11%  Similarity=0.123  Sum_probs=73.7

Q ss_pred             eeecCCCchhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcc--------cccchhhhhCCC
Q 013976          153 VTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED--------VGKPVSEYFGIT  223 (432)
Q Consensus       153 v~~l~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~--------~~~~l~~~~~i~  223 (432)
                      +.+++.+.+...+.++...+++|+++| ++|+.+.|.|.+++++  .++.|.++|.+...        -...+.+.+++.
T Consensus         8 ~~~it~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~--~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~   85 (122)
T TIGR01295         8 LEVTTVVRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQ--TKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIP   85 (122)
T ss_pred             ceecCHHHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHh--cCCcEEEEECCCccCcCcccHHHHHHHHHHcCCc
Confidence            456777778777888878889999999 9999999999999998  44667788877421        012445666654


Q ss_pred             C--CCCcEEEEEeCCCCceecCCC-CCCHHHHHHHHH
Q 013976          224 G--EAPKVLAYTGNDDAKKHILDG-ELTLDKIKTFGE  257 (432)
Q Consensus       224 ~--~~~P~i~i~~~~~~~~y~~~~-~~~~~~i~~fi~  257 (432)
                      .  ...|+++++.++... -.+.| ..+.+.|.+|+.
T Consensus        86 ~~i~~~PT~v~~k~Gk~v-~~~~G~~~~~~~l~~~~~  121 (122)
T TIGR01295        86 TSFMGTPTFVHITDGKQV-SVRCGSSTTAQELQDIAA  121 (122)
T ss_pred             ccCCCCCEEEEEeCCeEE-EEEeCCCCCHHHHHHHhh
Confidence            2  235999999776532 23445 567999999875

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>smart00594 UAS UAS domain

Probab=98.25  E-value=5.6e-06  Score=65.69  Aligned_cols=95  Identities=17%  Similarity=0.174  Sum_probs=68.3

Q ss_pred             ccchhhh---hcCCCcEEEEEeCCCChhhhhhHHH-HH--HHHHHhcCCCCEEEEEEeCCCccc----ccCCCCCCceEE
Q 013976          287 NNFDEIV---LDESKDVLLEIYAPWCGHCQAFEPT-YN--KLAKHLRGVDSIVIAKMDGTTNEH----HRAKSDGFPTIL  356 (432)
Q Consensus       287 ~~~~~~~---~~~~~~~lv~f~~~~c~~c~~~~~~-~~--~la~~~~~~~~~~~~~id~~~~~~----~~~~i~~~P~i~  356 (432)
                      .+|++.+   ....|.++|+|+++||..|..+... |.  ++...++.  ++.+..+|++..+.    ..+++.++|+++
T Consensus        14 gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~--~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~   91 (122)
T smart00594       14 GSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE--NFIFWQVDVDTSEGQRVSQFYKLDSFPYVA   91 (122)
T ss_pred             CCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc--CEEEEEecCCChhHHHHHHhcCcCCCCEEE
Confidence            4555544   3446799999999999999988654 22  24445554  68888899887776    478999999999


Q ss_pred             EE-eCCCcc--cCceeccCCCCHHHHHHHH
Q 013976          357 FF-PAGNKS--FDPINVDVDRTVVALYKFL  383 (432)
Q Consensus       357 ~~-~~g~~~--~~~~~y~g~~~~~~l~~fi  383 (432)
                      ++ ++|...  .-.-...|..+.+.++.+|
T Consensus        92 ~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l  121 (122)
T smart00594       92 IVDPRTGQRVIEWVGVVEGEISPEELMTFL  121 (122)
T ss_pred             EEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence            99 444210  0012577999999998876

>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=98.25  E-value=3.5e-06  Score=61.36  Aligned_cols=97  Identities=15%  Similarity=0.301  Sum_probs=71.6

Q ss_pred             CchhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCC--CCcEEEEEeC
Q 013976          159 ENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGE--APKVLAYTGN  235 (432)
Q Consensus       159 ~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~--~~P~i~i~~~  235 (432)
                      ..|.+++..... ++++|... .+-.+.+..+.++|...+|+-++++|||.+.+ .+.+|+.+.+.+.  +.|.. +.+.
T Consensus        10 KdfKKLLRTr~N-VLvLy~ks~k~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e-~kKLCKKlKv~~~~kp~~~~-LkHY   86 (112)
T cd03067          10 KDFKKLLRTRNN-VLVLYSKSAKSAEALLKLLSDVAQAVKGQGTIAWIDCGDSE-SRKLCKKLKVDPSSKPKPVE-LKHY   86 (112)
T ss_pred             HHHHHHHhhcCc-EEEEEecchhhHHHHHHHHHHHHHHhcCceeEEEEecCChH-HHHHHHHHccCCCCCCCcch-hhcc
Confidence            445667776644 55555555 77788889999999999999999999999866 8899999999833  22444 3333


Q ss_pred             CCC-ceecCCCCCCHHHHHHHHHH
Q 013976          236 DDA-KKHILDGELTLDKIKTFGED  258 (432)
Q Consensus       236 ~~~-~~y~~~~~~~~~~i~~fi~~  258 (432)
                      .++ -+-.|+...+..+|..|+.+
T Consensus        87 KdG~fHkdYdR~~t~kSmv~FlrD  110 (112)
T cd03067          87 KDGDFHTEYNRQLTFKSMVAFLRD  110 (112)
T ss_pred             cCCCccccccchhhHHHHHHHhhC
Confidence            333 23346778999999999976

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.24  E-value=4.8e-05  Score=76.39  Aligned_cols=176  Identities=14%  Similarity=0.101  Sum_probs=122.7

Q ss_pred             cceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCceecCCCCCC
Q 013976          170 KNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELT  248 (432)
Q Consensus       170 ~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~~~  248 (432)
                      ++.+.+|.+. +.|..+...+++++.-- +++.+...+.         .     .  ..|++.+...+......|.|-..
T Consensus        20 ~v~~~~~~~~~~~~~~~~~~~~~~~~~s-~~i~~~~~~~---------~-----~--~~p~~~~~~~~~~~~i~f~g~P~   82 (517)
T PRK15317         20 PIELVASLDDSEKSAELKELLEEIASLS-DKITVEEDSL---------D-----V--RKPSFSITRPGEDTGVRFAGIPM   82 (517)
T ss_pred             CEEEEEEeCCCchHHHHHHHHHHHHHhC-CceEEEEccC---------C-----C--CCCEEEEEcCCccceEEEEecCc
Confidence            4556666665 67888888888887764 4566543221         0     1  24999887644444456778778


Q ss_pred             HHHHHHHHHHHhcCCcCccccCCCCCCCCCCceEEEecccchhhhhcCCCc-EEEEEeCCCChhhhhhHHHHHHHHHHhc
Q 013976          249 LDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKD-VLLEIYAPWCGHCQAFEPTYNKLAKHLR  327 (432)
Q Consensus       249 ~~~i~~fi~~~~~g~l~~~~~se~~p~~~~~~v~~l~~~~~~~~~~~~~~~-~lv~f~~~~c~~c~~~~~~~~~la~~~~  327 (432)
                      -.++..||..+++-.       .+        -..|..... +.+..-+++ .+..|++++|.+|......+++++..-.
T Consensus        83 g~Ef~s~i~~i~~~~-------~~--------~~~l~~~~~-~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~  146 (517)
T PRK15317         83 GHEFTSLVLALLQVG-------GH--------PPKLDQEVI-EQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNP  146 (517)
T ss_pred             cHHHHHHHHHHHHhc-------CC--------CCCCCHHHH-HHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC
Confidence            888899998886511       11        112332332 234333444 5889999999999999999999987533


Q ss_pred             CCCCEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCcccCceeccCCCCHHHHHHHHHhcCC
Q 013976          328 GVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNAS  388 (432)
Q Consensus       328 ~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  388 (432)
                         ++.+-.+|...++.  .++++.++|++++  +|..     .+.|..+.+.+.+.+.+...
T Consensus       147 ---~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~-----~~~g~~~~~~~~~~~~~~~~  199 (517)
T PRK15317        147 ---NITHTMIDGALFQDEVEARNIMAVPTVFL--NGEE-----FGQGRMTLEEILAKLDTGAA  199 (517)
T ss_pred             ---CceEEEEEchhCHhHHHhcCCcccCEEEE--CCcE-----EEecCCCHHHHHHHHhcccc
Confidence               68999999999888  7999999999976  5543     68899999999998887543

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=98.24  E-value=8.7e-06  Score=59.58  Aligned_cols=78  Identities=15%  Similarity=0.110  Sum_probs=65.6

Q ss_pred             eEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCceecCCCCCCHH
Q 013976          172 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLD  250 (432)
Q Consensus       172 ~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~~~~~  250 (432)
                      +.+|+++| +.|+.+.+.+.+++..+...+.+..+|.++   .+.+++.+|+.+.  |++++  ++  . ..+.|..+.+
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~---~~~~~~~~~v~~v--Pt~~~--~g--~-~~~~G~~~~~   72 (82)
T TIGR00411         3 IELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVME---NPQKAMEYGIMAV--PAIVI--NG--D-VEFIGAPTKE   72 (82)
T ss_pred             EEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCcc---CHHHHHHcCCccC--CEEEE--CC--E-EEEecCCCHH
Confidence            56788899 999999999999999998889999999987   5588899999988  99975  22  2 3567888999


Q ss_pred             HHHHHHHHH
Q 013976          251 KIKTFGEDF  259 (432)
Q Consensus       251 ~i~~fi~~~  259 (432)
                      .+.++++..
T Consensus        73 ~l~~~l~~~   81 (82)
T TIGR00411        73 ELVEAIKKR   81 (82)
T ss_pred             HHHHHHHhh
Confidence            999988764

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>PLN02399 phospholipid hydroperoxide glutathione peroxidase

Probab=98.16  E-value=1.4e-05  Score=70.55  Aligned_cols=89  Identities=12%  Similarity=0.034  Sum_probs=66.5

Q ss_pred             CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCc------c---c-----cc----C------C---
Q 013976          296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN------E---H-----HR----A------K---  348 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~------~---~-----~~----~------~---  348 (432)
                      .++.+||.||++||..|....|.+.++.+.+++. ++.++-|+++..      +   .     .+    |      +   
T Consensus        98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~-Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G  176 (236)
T PLN02399         98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQ-GFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNG  176 (236)
T ss_pred             CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcC-CcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCc
Confidence            3589999999999999999999999999999864 688888886421      0   0     01    1      1   


Q ss_pred             ---------------------CCCCceEEEE-eCCCcccCceeccCCCCHHHHHHHHHhcCC
Q 013976          349 ---------------------SDGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNAS  388 (432)
Q Consensus       349 ---------------------i~~~P~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  388 (432)
                                           +...|+.+++ ++|+.+.   .|.|..+.+.|.+.|++.++
T Consensus       177 ~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~---~~~G~~~~~~le~~I~~lL~  235 (236)
T PLN02399        177 PSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVE---RYPPTTSPFQIEKDIQKLLA  235 (236)
T ss_pred             chhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEE---EECCCCCHHHHHHHHHHHhc
Confidence                                 1224777777 6666654   78898899999999988763

>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]

Probab=98.16  E-value=4.3e-05  Score=58.40  Aligned_cols=105  Identities=23%  Similarity=0.373  Sum_probs=75.3

Q ss_pred             ceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHH-HHhcCCCCEEEEEEeCCCccc-------ccCCC--
Q 013976          280 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLA-KHLRGVDSIVIAKMDGTTNEH-------HRAKS--  349 (432)
Q Consensus       280 ~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la-~~~~~~~~~~~~~id~~~~~~-------~~~~i--  349 (432)
                      .+..|+.-+|+..+ ...+.+||-|=...  +.=.-...|.++| +.....+++.+|.+-+.....       ++|++  
T Consensus         5 G~v~LD~~tFdKvi-~kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~k   81 (126)
T PF07912_consen    5 GCVPLDELTFDKVI-PKFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDK   81 (126)
T ss_dssp             TSEEESTTHHHHHG-GGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SC
T ss_pred             ceeeccceehhhee-ccCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCc
Confidence            35678999999977 55689999995422  2222356788899 555555689999998876443       46777  


Q ss_pred             CCCceEEEEeCCCcccCceec--cCCCCHHHHHHHHHhcCCC
Q 013976          350 DGFPTILFFPAGNKSFDPINV--DVDRTVVALYKFLKKNASI  389 (432)
Q Consensus       350 ~~~P~i~~~~~g~~~~~~~~y--~g~~~~~~l~~fi~~~~~~  389 (432)
                      ..+|.+++|..|..  .|+.|  .|..++++|..|+++++..
T Consensus        82 e~fPv~~LF~~~~~--~pv~~p~~~~~t~~~l~~fvk~~t~~  121 (126)
T PF07912_consen   82 EDFPVIYLFVGDKE--EPVRYPFDGDVTADNLQRFVKSNTGL  121 (126)
T ss_dssp             CC-SEEEEEESSTT--SEEEE-TCS-S-HHHHHHHHHHTSS-
T ss_pred             ccCCEEEEecCCCC--CCccCCccCCccHHHHHHHHHhCCCe
Confidence            57999999995444  89999  8899999999999999764

The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.

>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain

Probab=98.16  E-value=1.1e-05  Score=64.60  Aligned_cols=67  Identities=19%  Similarity=0.407  Sum_probs=51.7

Q ss_pred             CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCC-----cc-------------------c-----cc
Q 013976          296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT-----NE-------------------H-----HR  346 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~-----~~-------------------~-----~~  346 (432)
                      .+++++|+||++||..|....|.++++.+.+++. ++.++.|+...     ..                   .     ..
T Consensus        22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~-~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~  100 (126)
T cd03012          22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDD-GLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRA  100 (126)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcC-CeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHH
Confidence            4689999999999999999999999999999863 68887776521     00                   0     12


Q ss_pred             CCCCCCceEEEE-eCCCc
Q 013976          347 AKSDGFPTILFF-PAGNK  363 (432)
Q Consensus       347 ~~i~~~P~i~~~-~~g~~  363 (432)
                      +++..+|+.+++ ++|+.
T Consensus       101 ~~v~~~P~~~vid~~G~v  118 (126)
T cd03012         101 YGNQYWPALYLIDPTGNV  118 (126)
T ss_pred             hCCCcCCeEEEECCCCcE
Confidence            578889999999 45544

Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.

>PRK11509 hydrogenase-1 operon protein HyaE; Provisional

Probab=98.13  E-value=2.8e-05  Score=61.43  Aligned_cols=102  Identities=8%  Similarity=0.164  Sum_probs=79.1

Q ss_pred             ecCCCchhhhccCCCcceEEEEEeC----cchhhhHHHHHHHHHhccC-ceEEEEEecCCcccccchhhhhCCCCCCCcE
Q 013976          155 IFTRENAPSVFESPIKNQLLLFAVS----NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNEDVGKPVSEYFGITGEAPKV  229 (432)
Q Consensus       155 ~l~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~~a~~~~~-~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~  229 (432)
                      .++..+++.+...+ ...++|+..+    +......-.+.+++++|.+ ++.|+.||++.   ++.++..|||.+.  |+
T Consensus        21 ~~~~~~~~~~~~~~-~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~---~~~LA~~fgV~si--PT   94 (132)
T PRK11509         21 PVSESRLDDWLTQA-PDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQ---SEAIGDRFGVFRF--PA   94 (132)
T ss_pred             ccccccHHHHHhCC-CcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCC---CHHHHHHcCCccC--CE
Confidence            34557777776554 4566666544    3456677789999999984 59999999998   6699999999998  99


Q ss_pred             EEEEeCCCCceecCCCCCCHHHHHHHHHHHhcCC
Q 013976          230 LAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGK  263 (432)
Q Consensus       230 i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g~  263 (432)
                      ++++.+++ ..-...|..+.+.+.+||+.++...
T Consensus        95 Ll~FkdGk-~v~~i~G~~~k~~l~~~I~~~L~~~  127 (132)
T PRK11509         95 TLVFTGGN-YRGVLNGIHPWAELINLMRGLVEPQ  127 (132)
T ss_pred             EEEEECCE-EEEEEeCcCCHHHHHHHHHHHhcCc
Confidence            99997764 3334578899999999999998743

>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=98.13  E-value=3e-05  Score=62.01  Aligned_cols=106  Identities=17%  Similarity=0.305  Sum_probs=80.2

Q ss_pred             CCceeeCCHHHHHHHhhcCCeEEEEEecCCC-------cchHHHHHHHh-ccCCC-ceEEEeC---cHHHHhHcCCCCCC
Q 013976           46 PGIYNITTLDEAERVLTSETKVVLGYLNSLV-------GSESEVLADAS-RLEDD-VNFYQTT---NPDVAKIFHLDSKV  113 (432)
Q Consensus        46 ~~~~~i~~~~~l~~~~~~~~~~vv~f~~~~~-------~~~~~~f~~~a-~~~~~-~~F~~~~---~~~~~~~~~~~~~~  113 (432)
                      |-+.+|++.+.+++.=..+..++|+|+++..       ......|.++| ++++. +.|+.+.   ...+.+.+|+... 
T Consensus         2 ~~~~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~~-   80 (130)
T cd02983           2 PEIIELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGGF-   80 (130)
T ss_pred             CceEEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCcc-
Confidence            4577899988888777778899999998531       12455688888 78888 8999854   2348999998643 


Q ss_pred             CCCeEEEEecCCCceecccCCCCCHHHHHHHHHhcCCCce
Q 013976          114 NRPALVMVKKETEKISYFADGKFDKSTIADFVFSNKLPLV  153 (432)
Q Consensus       114 ~~p~i~l~~~~~~~~~~y~~g~~~~~~l~~fi~~~~~p~v  153 (432)
                      ++|++++++..+.++..+ .|+++.++|..|+.......+
T Consensus        81 ~~P~v~i~~~~~~KY~~~-~~~~t~e~i~~Fv~~~l~Gkl  119 (130)
T cd02983          81 GYPAMVAINFRKMKFATL-KGSFSEDGINEFLRELSYGRG  119 (130)
T ss_pred             CCCEEEEEecccCccccc-cCccCHHHHHHHHHHHHcCCc
Confidence            579999999854444346 899999999999998766544

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.

>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

Probab=98.11  E-value=1.9e-05  Score=67.61  Aligned_cols=102  Identities=14%  Similarity=0.073  Sum_probs=76.9

Q ss_pred             cCCCceeecCCCchhhhc-cCC--CcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCC
Q 013976          148 NKLPLVTIFTRENAPSVF-ESP--IKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGIT  223 (432)
Q Consensus       148 ~~~p~v~~l~~~~~~~~~-~~~--~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~  223 (432)
                      ..+..+.+++.++|...+ ..+  ..++|.||++| +.|+.+.+.|.++|.+|.. +.|+.+|++.      .+..|++.
T Consensus        79 ~~~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~-vkFvkI~ad~------~~~~~~i~  151 (192)
T cd02988          79 SKFGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPD-TKFVKIISTQ------CIPNYPDK  151 (192)
T ss_pred             CCCCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCC-CEEEEEEhHH------hHhhCCCC
Confidence            345678888888777533 332  35678899999 9999999999999999975 9999999874      25788998


Q ss_pred             CCCCcEEEEEeCCCCc--e---ecCCC-CCCHHHHHHHHHH
Q 013976          224 GEAPKVLAYTGNDDAK--K---HILDG-ELTLDKIKTFGED  258 (432)
Q Consensus       224 ~~~~P~i~i~~~~~~~--~---y~~~~-~~~~~~i~~fi~~  258 (432)
                      ..  |+++++.++...  .   ..+.| .++.+.|..++.+
T Consensus       152 ~l--PTlliyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~  190 (192)
T cd02988         152 NL--PTILVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQ  190 (192)
T ss_pred             CC--CEEEEEECCEEEEEEeCchhhCCCCCCHHHHHHHHHh
Confidence            77  999999876521  1   11223 6788888888765

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>TIGR02200 GlrX_actino Glutaredoxin-like protein

Probab=98.05  E-value=1.3e-05  Score=57.88  Aligned_cols=68  Identities=22%  Similarity=0.349  Sum_probs=48.0

Q ss_pred             EEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--cc-----CCCCCCceEEEEeCCCcccCceeccCC
Q 013976          301 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HR-----AKSDGFPTILFFPAGNKSFDPINVDVD  373 (432)
Q Consensus       301 lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~-----~~i~~~P~i~~~~~g~~~~~~~~y~g~  373 (432)
                      +++|+++||++|+.+++.+.++        .+.+..+|++.+..  ..     +++.++|++ ++.+|..+.       .
T Consensus         2 v~ly~~~~C~~C~~~~~~L~~~--------~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~l~-------~   65 (77)
T TIGR02200         2 ITVYGTTWCGYCAQLMRTLDKL--------GAAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSFLT-------N   65 (77)
T ss_pred             EEEEECCCChhHHHHHHHHHHc--------CCceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeEec-------C
Confidence            6789999999999999988776        34555688776654  22     378899997 566665431       4


Q ss_pred             CCHHHHHHHHH
Q 013976          374 RTVVALYKFLK  384 (432)
Q Consensus       374 ~~~~~l~~fi~  384 (432)
                      .+...+.+.|.
T Consensus        66 ~~~~~~~~~l~   76 (77)
T TIGR02200        66 PSAAQVKAKLQ   76 (77)
T ss_pred             CCHHHHHHHhh
Confidence            55566666554

This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.04  E-value=0.00019  Score=72.11  Aligned_cols=176  Identities=15%  Similarity=0.137  Sum_probs=120.6

Q ss_pred             cceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCceecCCCCCC
Q 013976          170 KNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELT  248 (432)
Q Consensus       170 ~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~~~  248 (432)
                      ++.+.+|.+. +.|+.+...+++++.-- +++.+...+...               ...|++.+...+......|-|-..
T Consensus        20 ~v~~~~~~~~~~~~~~~~~~~~~~~~~s-~ki~~~~~~~~~---------------~~~p~~~~~~~~~~~~i~f~g~P~   83 (515)
T TIGR03140        20 PVTLVLSAGSHEKSKELLELLDEIASLS-DKISLTQNTADT---------------LRKPSFTILRDGADTGIRFAGIPG   83 (515)
T ss_pred             CEEEEEEeCCCchhHHHHHHHHHHHHhC-CCeEEEEecCCc---------------CCCCeEEEecCCcccceEEEecCC
Confidence            4556566555 67888887777777654 557664433211               124999887544333456677777


Q ss_pred             HHHHHHHHHHHhcCCcCccccCCCCCCCCCCceEEEecccchhhhhcCCCc-EEEEEeCCCChhhhhhHHHHHHHHHHhc
Q 013976          249 LDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKD-VLLEIYAPWCGHCQAFEPTYNKLAKHLR  327 (432)
Q Consensus       249 ~~~i~~fi~~~~~g~l~~~~~se~~p~~~~~~v~~l~~~~~~~~~~~~~~~-~lv~f~~~~c~~c~~~~~~~~~la~~~~  327 (432)
                      -.++..||..+++-.-.               -..|.....+. +..-+++ .+-.|.++.|.+|......+++++....
T Consensus        84 g~Ef~s~i~~i~~~~~~---------------~~~l~~~~~~~-~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p  147 (515)
T TIGR03140        84 GHEFTSLVLAILQVGGH---------------GPKLDEGIIDR-IRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNP  147 (515)
T ss_pred             cHHHHHHHHHHHHhcCC---------------CCCCCHHHHHH-HHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC
Confidence            78888899887752111               12233333333 3333444 5889999999999998888888877754


Q ss_pred             CCCCEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCcccCceeccCCCCHHHHHHHHHhcC
Q 013976          328 GVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA  387 (432)
Q Consensus       328 ~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  387 (432)
                         ++..-.+|...++.  .++++.++|++++  +|..     .+.|..+.+.+.+.+....
T Consensus       148 ---~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~-----~~~g~~~~~~~~~~l~~~~  199 (515)
T TIGR03140       148 ---NISHTMIDGALFQDEVEALGIQGVPAVFL--NGEE-----FHNGRMDLAELLEKLEETA  199 (515)
T ss_pred             ---CceEEEEEchhCHHHHHhcCCcccCEEEE--CCcE-----EEecCCCHHHHHHHHhhcc
Confidence               58888899998888  7899999999976  4443     6889899998888887664

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD

Probab=98.03  E-value=3.1e-05  Score=66.61  Aligned_cols=85  Identities=18%  Similarity=0.205  Sum_probs=56.1

Q ss_pred             CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEe-------------CC------Cccc-ccCCCCCCceE
Q 013976          296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD-------------GT------TNEH-HRAKSDGFPTI  355 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id-------------~~------~~~~-~~~~i~~~P~i  355 (432)
                      .+++++|+||++||..|+...|.+.++.+....  ++.++..|             .+      ..+. ..|++..+|+.
T Consensus        73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~~--~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~  150 (189)
T TIGR02661        73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEET--DVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYG  150 (189)
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHhcCC--cEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceE
Confidence            468899999999999999999999998766432  45544421             00      0011 35788999998


Q ss_pred             EEEeCCCcccCceeccCC-CCHHHHHHHHHhc
Q 013976          356 LFFPAGNKSFDPINVDVD-RTVVALYKFLKKN  386 (432)
Q Consensus       356 ~~~~~g~~~~~~~~y~g~-~~~~~l~~fi~~~  386 (432)
                      +++.++..+    .+.|. ...+.+.+.++..
T Consensus       151 ~lID~~G~I----~~~g~~~~~~~le~ll~~l  178 (189)
T TIGR02661       151 VLLDQDGKI----RAKGLTNTREHLESLLEAD  178 (189)
T ss_pred             EEECCCCeE----EEccCCCCHHHHHHHHHHH
Confidence            888433333    44553 4556666666644

This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.

>PTZ00056 glutathione peroxidase; Provisional

Probab=98.02  E-value=1.8e-05  Score=68.49  Aligned_cols=44  Identities=16%  Similarity=0.255  Sum_probs=38.9

Q ss_pred             CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCC
Q 013976          296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT  340 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~  340 (432)
                      .++.+||.||++||+.|...+|.+.++..++++. ++.+..|+++
T Consensus        38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~-g~~vvgv~~~   81 (199)
T PTZ00056         38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPL-GLEILAFPTS   81 (199)
T ss_pred             CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcC-ceEEEEecch
Confidence            3689999999999999999999999999999864 6888888864

>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins

Probab=98.02  E-value=1.4e-05  Score=65.77  Aligned_cols=68  Identities=19%  Similarity=0.454  Sum_probs=52.0

Q ss_pred             CCCcEEEEEeCC-CChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc-----------------------ccCCCC-
Q 013976          296 ESKDVLLEIYAP-WCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----------------------HRAKSD-  350 (432)
Q Consensus       296 ~~~~~lv~f~~~-~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-----------------------~~~~i~-  350 (432)
                      .+++++|.||++ ||++|....|.+.++++.+++. ++.++.+..+.+..                       ..+++. 
T Consensus        27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~-~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~  105 (146)
T PF08534_consen   27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDK-GVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTI  105 (146)
T ss_dssp             TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT-TCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEE
T ss_pred             CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccC-ceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCcc
Confidence            478899999999 9999999999999999998764 56666666554321                       245777 


Q ss_pred             --------CCceEEEEeCCCcc
Q 013976          351 --------GFPTILFFPAGNKS  364 (432)
Q Consensus       351 --------~~P~i~~~~~g~~~  364 (432)
                              .+|+++++-+..++
T Consensus       106 ~~~~~~~~~~P~~~lId~~G~V  127 (146)
T PF08534_consen  106 MEDPGNGFGIPTTFLIDKDGKV  127 (146)
T ss_dssp             ECCTTTTSSSSEEEEEETTSBE
T ss_pred             ccccccCCeecEEEEEECCCEE
Confidence                    99999888554443

Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=98.02  E-value=2.1e-05  Score=61.43  Aligned_cols=86  Identities=20%  Similarity=0.216  Sum_probs=62.9

Q ss_pred             CCcceEEEEE-------eC-cchhhhHHHHHHHHHhccCceEEEEEecCCcc----cccchhhhhCCCCCCCcEEEEEeC
Q 013976          168 PIKNQLLLFA-------VS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED----VGKPVSEYFGITGEAPKVLAYTGN  235 (432)
Q Consensus       168 ~~~~~i~~~~-------~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~----~~~~l~~~~~i~~~~~P~i~i~~~  235 (432)
                      +.+++|.|++       +| ++|+.+.+.+++++.++.+++.|+.||+++..    -+..+...++|. ...|+++++..
T Consensus        21 ~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~-~~iPT~~~~~~   99 (119)
T cd02952          21 GKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLT-TGVPTLLRWKT   99 (119)
T ss_pred             CCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcc-cCCCEEEEEcC
Confidence            5678888999       89 99999999999999999978999999997621    134778889997 23499999954


Q ss_pred             CCCceecCCCCCCHHHHHHHH
Q 013976          236 DDAKKHILDGELTLDKIKTFG  256 (432)
Q Consensus       236 ~~~~~y~~~~~~~~~~i~~fi  256 (432)
                      +.  +..-..=.+...+..|.
T Consensus       100 ~~--~l~~~~c~~~~~~~~~~  118 (119)
T cd02952         100 PQ--RLVEDECLQADLVEMFF  118 (119)
T ss_pred             Cc--eecchhhcCHHHHHHhh
Confidence            32  22111124666666664

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>PLN02412 probable glutathione peroxidase

Probab=98.00  E-value=2.9e-05  Score=65.32  Aligned_cols=89  Identities=13%  Similarity=0.069  Sum_probs=64.5

Q ss_pred             CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCC------ccc--------cc----CC---------
Q 013976          296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT------NEH--------HR----AK---------  348 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~------~~~--------~~----~~---------  348 (432)
                      .++.+||.||++||+.|....|.+.++.+.|++. ++.++-|+++.      ...        .+    |.         
T Consensus        28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~-g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~g  106 (167)
T PLN02412         28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQ-GFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVNG  106 (167)
T ss_pred             CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhC-CcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeCC
Confidence            3588999999999999999899999999999874 68888887632      110        01    11         


Q ss_pred             ---------------------CCCCceEEEE-eCCCcccCceeccCCCCHHHHHHHHHhcCC
Q 013976          349 ---------------------SDGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNAS  388 (432)
Q Consensus       349 ---------------------i~~~P~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  388 (432)
                                           +...|+.+++ ++|+.+.   .+.|..+.+.|...|.+.+.
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~---~~~g~~~~~~l~~~i~~~l~  165 (167)
T PLN02412        107 KNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQ---RYAPTTSPLKIEKDIQNLLG  165 (167)
T ss_pred             CCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEE---EECCCCCHHHHHHHHHHHHh
Confidence                                 2234677777 5555554   67788888888888887653

>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family

Probab=97.99  E-value=1.4e-05  Score=56.98  Aligned_cols=67  Identities=16%  Similarity=0.272  Sum_probs=51.1

Q ss_pred             EEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc------ccCCCCCCceEEEEeCCCcccCceeccCCC
Q 013976          301 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------HRAKSDGFPTILFFPAGNKSFDPINVDVDR  374 (432)
Q Consensus       301 lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~------~~~~i~~~P~i~~~~~g~~~~~~~~y~g~~  374 (432)
                      +.+|+++||++|+.+.+.|.+.        ++.+..+|++.+..      ..+++.++|++++.  |.      .+.| .
T Consensus         2 i~lf~~~~C~~C~~~~~~l~~~--------~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~------~~~g-~   64 (74)
T TIGR02196         2 VKVYTTPWCPPCKKAKEYLTSK--------GIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HK------IIVG-F   64 (74)
T ss_pred             EEEEcCCCChhHHHHHHHHHHC--------CCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CE------EEee-C
Confidence            5789999999999998887652        57888889887654      24789999999885  32      3445 5


Q ss_pred             CHHHHHHHHH
Q 013976          375 TVVALYKFLK  384 (432)
Q Consensus       375 ~~~~l~~fi~  384 (432)
                      +.+.|.++|+
T Consensus        65 ~~~~i~~~i~   74 (74)
T TIGR02196        65 DPEKLDQLLE   74 (74)
T ss_pred             CHHHHHHHhC
Confidence            7788888763

This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.

>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.97  E-value=6.3e-05  Score=66.89  Aligned_cols=115  Identities=12%  Similarity=0.256  Sum_probs=90.3

Q ss_pred             CCceEEEecccchhhhhcCCC--cEEEEEeCC----CChhhhhhHHHHHHHHHHhcCC------CCEEEEEEeCCCccc-
Q 013976          278 DGDVKIVVGNNFDEIVLDESK--DVLLEIYAP----WCGHCQAFEPTYNKLAKHLRGV------DSIVIAKMDGTTNEH-  344 (432)
Q Consensus       278 ~~~v~~l~~~~~~~~~~~~~~--~~lv~f~~~----~c~~c~~~~~~~~~la~~~~~~------~~~~~~~id~~~~~~-  344 (432)
                      +..|..+++++|..++.....  -++|+|.|.    .|.-|++....+.-+|..+..+      .++-|..+|.++.+. 
T Consensus        39 ~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~~  118 (331)
T KOG2603|consen   39 ESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQV  118 (331)
T ss_pred             CCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHHH
Confidence            456899999999999865544  378888874    5999999999999999987642      268999999998777 


Q ss_pred             -ccCCCCCCceEEEEeCC-CcccCceeccC---CCCHHHHHHHHHhcCCCCCc
Q 013976          345 -HRAKSDGFPTILFFPAG-NKSFDPINVDV---DRTVVALYKFLKKNASIPFK  392 (432)
Q Consensus       345 -~~~~i~~~P~i~~~~~g-~~~~~~~~y~g---~~~~~~l~~fi~~~~~~~~~  392 (432)
                       +.+++.+.|++++|+.. ....++..+++   +..++++.+|+++.+.....
T Consensus       119 Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tkv~v~  171 (331)
T KOG2603|consen  119 FQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTKVNVR  171 (331)
T ss_pred             HHHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhhheee
Confidence             78999999999999332 22224445554   45689999999999986664

>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=97.96  E-value=3.2e-05  Score=60.56  Aligned_cols=66  Identities=29%  Similarity=0.626  Sum_probs=56.0

Q ss_pred             CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCC-Cccc--ccCC--CCCCceEEEEeCCCcc
Q 013976          297 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT-TNEH--HRAK--SDGFPTILFFPAGNKS  364 (432)
Q Consensus       297 ~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~-~~~~--~~~~--i~~~P~i~~~~~g~~~  364 (432)
                      ++++++.||++||++|+.+.|.+.+++..+..  .+.+..+|+. .+..  ..+.  +..+|+++++.++...
T Consensus        32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  102 (127)
T COG0526          32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG--DVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEV  102 (127)
T ss_pred             CceEEEEEEcCcCHHHHhhchhHHHHHHHhcC--CcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcchh
Confidence            67888888999999999999999999999987  6899999986 3333  5677  8999999998888654

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

Probab=97.96  E-value=2.9e-05  Score=53.33  Aligned_cols=58  Identities=33%  Similarity=0.672  Sum_probs=48.8

Q ss_pred             EEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCcccc-----cCCCCCCceEEEEeCC
Q 013976          301 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHH-----RAKSDGFPTILFFPAG  361 (432)
Q Consensus       301 lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~~-----~~~i~~~P~i~~~~~g  361 (432)
                      ++.|+++||++|..+.+.+.++ .....  ++.+..++++.....     .+.+..+|+++++..|
T Consensus         1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~   63 (69)
T cd01659           1 LVLFYAPWCPFCQALRPVLAEL-ALLNK--GVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG   63 (69)
T ss_pred             CEEEECCCChhHHhhhhHHHHH-HhhCC--CcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence            5789999999999999999998 33333  799999998888762     6789999999999877

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.

>TIGR02540 gpx7 putative glutathione peroxidase Gpx7

Probab=97.95  E-value=4.3e-05  Score=63.41  Aligned_cols=43  Identities=16%  Similarity=0.144  Sum_probs=38.1

Q ss_pred             CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeC
Q 013976          296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG  339 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~  339 (432)
                      .++++||.||++||++|...+|.+.++.+.+++. ++.+..|++
T Consensus        21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~-~~~v~~i~~   63 (153)
T TIGR02540        21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPS-HFNVLAFPC   63 (153)
T ss_pred             CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhC-CeEEEEEec
Confidence            3578999999999999999999999999999864 688888886

This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.

>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs

Probab=97.91  E-value=8.1e-05  Score=63.04  Aligned_cols=89  Identities=16%  Similarity=0.172  Sum_probs=65.6

Q ss_pred             CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCc------cc-------------------------
Q 013976          296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN------EH-------------------------  344 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~------~~-------------------------  344 (432)
                      .++.+||+||++||..|....+.+.++...+++. ++.|+.|.++..      +.                         
T Consensus        24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~-~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~  102 (171)
T cd02969          24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAK-GVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVA  102 (171)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhC-CeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHH
Confidence            5688999999999999999999999999999853 688888877542      10                         


Q ss_pred             ccCCCCCCceEEEEeCCCcccCceecc-----------CCCCHHHHHHHHHhcCCC
Q 013976          345 HRAKSDGFPTILFFPAGNKSFDPINVD-----------VDRTVVALYKFLKKNASI  389 (432)
Q Consensus       345 ~~~~i~~~P~i~~~~~g~~~~~~~~y~-----------g~~~~~~l~~fi~~~~~~  389 (432)
                      ..+++...|+++++.++.++    .|.           +..+...+.+.|...++.
T Consensus       103 ~~~~v~~~P~~~lid~~G~v----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~  154 (171)
T cd02969         103 KAYGAACTPDFFLFDPDGKL----VYRGRIDDSRPGNDPPVTGRDLRAALDALLAG  154 (171)
T ss_pred             HHcCCCcCCcEEEECCCCeE----EEeecccCCcccccccccHHHHHHHHHHHHcC
Confidence            13478899999999543333    233           234567788888777653

Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=97.87  E-value=0.0006  Score=69.06  Aligned_cols=185  Identities=10%  Similarity=0.152  Sum_probs=129.0

Q ss_pred             HHHHHhhc--CCeEEEEEecCCC--cchHHHHH-HHhccCCCceEEE---eCcHHHHhHcCCCCCCCCCeEEEEecCC-C
Q 013976           56 EAERVLTS--ETKVVLGYLNSLV--GSESEVLA-DASRLEDDVNFYQ---TTNPDVAKIFHLDSKVNRPALVMVKKET-E  126 (432)
Q Consensus        56 ~l~~~~~~--~~~~vv~f~~~~~--~~~~~~f~-~~a~~~~~~~F~~---~~~~~~~~~~~~~~~~~~p~i~l~~~~~-~  126 (432)
                      +|+.++..  +++.++.|.++.+  ..+.+.|. +++.+.+.+.+-.   .++.++++.|++..   .|++++++..+ .
T Consensus       356 ~l~~~~~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~~~~~~~~~v~~---~P~~~i~~~~~~~  432 (555)
T TIGR03143       356 QLVGIFGRLENPVTLLLFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRGEEPESETLPKITK---LPTVALLDDDGNY  432 (555)
T ss_pred             HHHHHHHhcCCCEEEEEEECCCchhhHHHHHHHHHHHhcCCcEEEEEeccccchhhHhhcCCCc---CCEEEEEeCCCcc
Confidence            35555543  4667777776543  22444554 5777777777654   34668899999976   69999986433 3


Q ss_pred             ceecccCCCCCHHHHHHHHHh---cCCCceeecCCCchhhhccCCCcceEEE-EEeC-cchhhhHHHHHHHHHhccCceE
Q 013976          127 KISYFADGKFDKSTIADFVFS---NKLPLVTIFTRENAPSVFESPIKNQLLL-FAVS-NDSEKLLPVFEEAAKSFKGKLI  201 (432)
Q Consensus       127 ~~~~y~~g~~~~~~l~~fi~~---~~~p~v~~l~~~~~~~~~~~~~~~~i~~-~~~~-~~~~~~~~~~~~~a~~~~~~i~  201 (432)
                      ....| .|--.-.++.+||..   .+-+ -..++.+....+-.-.++..|.+ +.++ +.|......++++|.... ++.
T Consensus       433 ~~i~f-~g~P~G~Ef~s~i~~i~~~~~~-~~~l~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~-~i~  509 (555)
T TIGR03143       433 TGLKF-HGVPSGHELNSFILALYNAAGP-GQPLGEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP-NVE  509 (555)
T ss_pred             cceEE-EecCccHhHHHHHHHHHHhcCC-CCCCCHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC-Cce
Confidence            44788 787766777777753   2322 33566666666654445655554 5677 899999999999999976 488


Q ss_pred             EEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCceecCCCCCCHHHHHHHH
Q 013976          202 FVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFG  256 (432)
Q Consensus       202 f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi  256 (432)
                      .-.+|+..   .+++++.|++...  |++++..    . ..+.|..+.+.|..++
T Consensus       510 ~~~i~~~~---~~~~~~~~~v~~v--P~~~i~~----~-~~~~G~~~~~~~~~~~  554 (555)
T TIGR03143       510 AEMIDVSH---FPDLKDEYGIMSV--PAIVVDD----Q-QVYFGKKTIEEMLELI  554 (555)
T ss_pred             EEEEECcc---cHHHHHhCCceec--CEEEECC----E-EEEeeCCCHHHHHHhh
Confidence            99999988   5699999999888  9997741    2 2346878999888876

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.82  E-value=0.00013  Score=62.70  Aligned_cols=87  Identities=13%  Similarity=0.160  Sum_probs=71.7

Q ss_pred             CcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCceecCCCCC
Q 013976          169 IKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGEL  247 (432)
Q Consensus       169 ~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~~  247 (432)
                      +.+++-|++.| ++|+.+.|.|..+|.+|.+ ..|..||+++.   +..+..+|++..  |+++++.++.  +...-...
T Consensus        22 k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~-aVFlkVdVd~c---~~taa~~gV~am--PTFiff~ng~--kid~~qGA   93 (288)
T KOG0908|consen   22 KLVVVDFTASWCGPCKRIAPIFSDLANKYPG-AVFLKVDVDEC---RGTAATNGVNAM--PTFIFFRNGV--KIDQIQGA   93 (288)
T ss_pred             eEEEEEEEecccchHHhhhhHHHHhhhhCcc-cEEEEEeHHHh---hchhhhcCcccC--ceEEEEecCe--EeeeecCC
Confidence            34567799999 9999999999999999987 89999999985   477888999988  9999997664  33443448


Q ss_pred             CHHHHHHHHHHHhcCC
Q 013976          248 TLDKIKTFGEDFLEGK  263 (432)
Q Consensus       248 ~~~~i~~fi~~~~~g~  263 (432)
                      +...|+.-|..|.+..
T Consensus        94 d~~gLe~kv~~~~sts  109 (288)
T KOG0908|consen   94 DASGLEEKVAKYASTS  109 (288)
T ss_pred             CHHHHHHHHHHHhccC
Confidence            8899999999987643

>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B

Probab=97.81  E-value=9.8e-05  Score=53.05  Aligned_cols=70  Identities=17%  Similarity=0.271  Sum_probs=52.1

Q ss_pred             EeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc-ccCCCCCCceEEEEeCCCcccCceeccC-CCCHHHHHH
Q 013976          304 IYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-HRAKSDGFPTILFFPAGNKSFDPINVDV-DRTVVALYK  381 (432)
Q Consensus       304 f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-~~~~i~~~P~i~~~~~g~~~~~~~~y~g-~~~~~~l~~  381 (432)
                      +++++|..|..+...+.+++..++    +.+-.+|....+. .++++.++|++++  +|+.     .|.| ..+.+.|.+
T Consensus         5 v~~~~C~~C~~~~~~~~~~~~~~~----i~~ei~~~~~~~~~~~ygv~~vPalvI--ng~~-----~~~G~~p~~~el~~   73 (76)
T PF13192_consen    5 VFSPGCPYCPELVQLLKEAAEELG----IEVEIIDIEDFEEIEKYGVMSVPALVI--NGKV-----VFVGRVPSKEELKE   73 (76)
T ss_dssp             EECSSCTTHHHHHHHHHHHHHHTT----EEEEEEETTTHHHHHHTT-SSSSEEEE--TTEE-----EEESS--HHHHHHH
T ss_pred             EeCCCCCCcHHHHHHHHHHHHhcC----CeEEEEEccCHHHHHHcCCCCCCEEEE--CCEE-----EEEecCCCHHHHHH
Confidence            368889999999999999988883    4555556544333 6899999999955  5543     7899 888899999


Q ss_pred             HHH
Q 013976          382 FLK  384 (432)
Q Consensus       382 fi~  384 (432)
                      ||+
T Consensus        74 ~l~   76 (76)
T PF13192_consen   74 LLE   76 (76)
T ss_dssp             HHH
T ss_pred             HhC
Confidence            885

...

>PF13728 TraF: F plasmid transfer operon protein

Probab=97.75  E-value=9.9e-05  Score=64.50  Aligned_cols=83  Identities=19%  Similarity=0.251  Sum_probs=61.2

Q ss_pred             CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCC---------Cccc--ccCCCCCCceEEEEeCCCccc
Q 013976          297 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT---------TNEH--HRAKSDGFPTILFFPAGNKSF  365 (432)
Q Consensus       297 ~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~---------~~~~--~~~~i~~~P~i~~~~~g~~~~  365 (432)
                      ++.-|++||.+.|..|+.+.|++..++..++=  .+..+.+|..         .+..  .+++|..+|++++...+....
T Consensus       120 ~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg~--~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~~  197 (215)
T PF13728_consen  120 QKYGLFFFYRSDCPYCQQQAPILQQFADKYGF--SVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKKW  197 (215)
T ss_pred             hCeEEEEEEcCCCchhHHHHHHHHHHHHHhCC--EEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCeE
Confidence            46679999999999999999999999999954  4555655532         1122  468999999999996655321


Q ss_pred             CceeccCCCCHHHHHHH
Q 013976          366 DPINVDVDRTVVALYKF  382 (432)
Q Consensus       366 ~~~~y~g~~~~~~l~~f  382 (432)
                      .| .-.|..+...|.+-
T Consensus       198 ~p-v~~G~~s~~~L~~r  213 (215)
T PF13728_consen  198 YP-VSQGFMSLDELEDR  213 (215)
T ss_pred             EE-EeeecCCHHHHHHh
Confidence            22 34577888887754

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=97.74  E-value=3.9e-05  Score=59.89  Aligned_cols=88  Identities=14%  Similarity=0.226  Sum_probs=62.7

Q ss_pred             CCCcceEEEEEeC-cchhhhHHHHHH---HHHhccCceEEEEEecCCcc-----------------cccchhhhhCCCCC
Q 013976          167 SPIKNQLLLFAVS-NDSEKLLPVFEE---AAKSFKGKLIFVYVQMDNED-----------------VGKPVSEYFGITGE  225 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~~~~~~~~~~~---~a~~~~~~i~f~~vd~~~~~-----------------~~~~l~~~~~i~~~  225 (432)
                      ++++.+++|+.+| +.|+.+.+.+.+   ++..++.++.++.+++....                 .+..+.+.+|++++
T Consensus         4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~gt   83 (112)
T PF13098_consen    4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNGT   83 (112)
T ss_dssp             TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--SS
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCcc
Confidence            4567788888888 999999887774   66677767888888887532                 02357899999998


Q ss_pred             CCcEEEEEeCCCCceecCCCCCCHHHHHHHH
Q 013976          226 APKVLAYTGNDDAKKHILDGELTLDKIKTFG  256 (432)
Q Consensus       226 ~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi  256 (432)
                        |++++++.++...+.+.|..+.+.|.+++
T Consensus        84 --Pt~~~~d~~G~~v~~~~G~~~~~~l~~~L  112 (112)
T PF13098_consen   84 --PTIVFLDKDGKIVYRIPGYLSPEELLKML  112 (112)
T ss_dssp             --SEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred             --CEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence              99999875554556678999999888764

...

>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=97.74  E-value=0.00026  Score=54.91  Aligned_cols=103  Identities=16%  Similarity=0.094  Sum_probs=76.4

Q ss_pred             eEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHH---hcCCCCEEEEEEeCCCccc--ccCCCCC--Cc
Q 013976          281 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKH---LRGVDSIVIAKMDGTTNEH--HRAKSDG--FP  353 (432)
Q Consensus       281 v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~---~~~~~~~~~~~id~~~~~~--~~~~i~~--~P  353 (432)
                      |..++.+++..+. +.+.+..++|+  .-..-..+...+.++|+.   +++  ++.|+.+|.+....  ..++++.  +|
T Consensus         1 ~~e~t~e~~~~~~-~~~~~~~~l~f--~~~~~~~~~~~~~~vAk~~~~~kg--ki~Fv~~d~~~~~~~~~~fgl~~~~~P   75 (111)
T cd03072           1 VREITFENAEELT-EEGLPFLILFH--DKDDLESLKEFKQAVARQLISEKG--AINFLTADGDKFRHPLLHLGKTPADLP   75 (111)
T ss_pred             CcccccccHHHHh-cCCCCeEEEEe--cchHHHHHHHHHHHHHHHHHhcCc--eEEEEEEechHhhhHHHHcCCCHhHCC
Confidence            3557778887755 55555555555  333457788999999999   887  69999999998765  6788886  99


Q ss_pred             eEEEEeCCCcccCceeccCCCCHHHHHHHHHhcCCC
Q 013976          354 TILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASI  389 (432)
Q Consensus       354 ~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~  389 (432)
                      .+++....... +...+.+..+.++|.+|+++....
T Consensus        76 ~i~i~~~~~~~-Ky~~~~~~~t~~~i~~Fv~~~~~G  110 (111)
T cd03072          76 VIAIDSFRHMY-LFPDFEDVYVPGKLKQFVLDLHSG  110 (111)
T ss_pred             EEEEEcchhcC-cCCCCccccCHHHHHHHHHHHhcC
Confidence            99999765422 222266889999999999988753

It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.

>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=97.71  E-value=0.0002  Score=54.25  Aligned_cols=84  Identities=21%  Similarity=0.309  Sum_probs=63.1

Q ss_pred             hhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc-ccCCCCCCceEEEEeCCCcccCceecc
Q 013976          293 VLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-HRAKSDGFPTILFFPAGNKSFDPINVD  371 (432)
Q Consensus       293 ~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-~~~~i~~~P~i~~~~~g~~~~~~~~y~  371 (432)
                      +......++|-|+..+|+.   ....|.++|..+++  .+.|+.+.-  ... ..+.+ .-|++++|+....  .++.|.
T Consensus        13 ~~~~~~~~vvg~f~~~~~~---~~~~f~~~A~~~r~--~~~F~~~~~--~~~~~~~~~-~~~~i~l~~~~~~--~~~~y~   82 (97)
T cd02981          13 FLDKDDVVVVGFFKDEESE---EYKTFEKVAESLRD--DYGFGHTSD--KEVAKKLKV-KPGSVVLFKPFEE--EPVEYD   82 (97)
T ss_pred             HhccCCeEEEEEECCCCcH---HHHHHHHHHHhccc--CCeEEEECh--HHHHHHcCC-CCCceEEeCCccc--CCccCC
Confidence            3456778888888888874   56789999999987  588887772  222 34554 4599999977643  566899


Q ss_pred             CCCCHHHHHHHHHhc
Q 013976          372 VDRTVVALYKFLKKN  386 (432)
Q Consensus       372 g~~~~~~l~~fi~~~  386 (432)
                      |..+.+.|.+||..+
T Consensus        83 g~~~~~~l~~fi~~~   97 (97)
T cd02981          83 GEFTEESLVEFIKDN   97 (97)
T ss_pred             CCCCHHHHHHHHHhC
Confidence            999999999999864

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai

>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like

Probab=97.68  E-value=0.00012  Score=56.98  Aligned_cols=65  Identities=23%  Similarity=0.427  Sum_probs=45.1

Q ss_pred             CCCcEEEEEeC-------CCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCcc--------c---ccCCCCCCceEEE
Q 013976          296 ESKDVLLEIYA-------PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--------H---HRAKSDGFPTILF  357 (432)
Q Consensus       296 ~~~~~lv~f~~-------~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~--------~---~~~~i~~~P~i~~  357 (432)
                      ++++++|+|++       +||+.|....|++.+.-.....  +..++.+.+..-.        -   +.+.++++||++-
T Consensus        18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~--~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~   95 (119)
T PF06110_consen   18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE--NARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIR   95 (119)
T ss_dssp             TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST--TEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEE
T ss_pred             CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC--CceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEE
Confidence            45788888885       5999999999999998888655  6888888775321        1   3689999999999


Q ss_pred             EeCCC
Q 013976          358 FPAGN  362 (432)
Q Consensus       358 ~~~g~  362 (432)
                      +..+.
T Consensus        96 ~~~~~  100 (119)
T PF06110_consen   96 WETGE  100 (119)
T ss_dssp             CTSS-
T ss_pred             ECCCC
Confidence            98774

; PDB: 1V9W_A 1WOU_A.

>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=97.66  E-value=0.00069  Score=50.16  Aligned_cols=105  Identities=19%  Similarity=0.275  Sum_probs=76.0

Q ss_pred             ceeecCCCchhhhccCCC-cceEEEEEeC--cchhhhHHHHHHHHHhccC--ceEEEEEecCCcccccchh----hhhCC
Q 013976          152 LVTIFTRENAPSVFESPI-KNQLLLFAVS--NDSEKLLPVFEEAAKSFKG--KLIFVYVQMDNEDVGKPVS----EYFGI  222 (432)
Q Consensus       152 ~v~~l~~~~~~~~~~~~~-~~~i~~~~~~--~~~~~~~~~~~~~a~~~~~--~i~f~~vd~~~~~~~~~l~----~~~~i  222 (432)
                      ....+++++...+..... -.+|+.|+..  ++..+++..++++|+.+..  ++.|+++|.+++.   -+.    +.|||
T Consensus         2 tlrkl~~~~m~e~wedd~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FP---llv~yWektF~I   78 (120)
T cd03074           2 TLRKLKPENMFETWEDDLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFP---LLVPYWEKTFGI   78 (120)
T ss_pred             chhhccHHHHHHhhhcccCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCc---hhhHHHHhhcCc
Confidence            345566666555433222 3366777766  7788899999999999985  6999999999853   322    56788


Q ss_pred             CCCCCcEEEEEeCCC--CceecCCCC---CCHHHHHHHHHHHh
Q 013976          223 TGEAPKVLAYTGNDD--AKKHILDGE---LTLDKIKTFGEDFL  260 (432)
Q Consensus       223 ~~~~~P~i~i~~~~~--~~~y~~~~~---~~~~~i~~fi~~~~  260 (432)
                      .-. -|+|.+.+...  +..+.+++.   .+.+.|..||++++
T Consensus        79 Dl~-~PqIGVV~vtdadSvW~~m~~~~d~~t~~~Le~WiedVL  120 (120)
T cd03074          79 DLF-RPQIGVVNVTDADSVWMEMDDDEDLPTAEELEDWIEDVL  120 (120)
T ss_pred             ccC-CCceeeEecccccceeEecccccccCcHHHHHHHHHhhC
Confidence            765 59998887644  567888664   68999999999864

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=97.63  E-value=0.00036  Score=68.57  Aligned_cols=94  Identities=15%  Similarity=0.093  Sum_probs=71.4

Q ss_pred             hccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccC-ceEEEEEecCC-------------------------cccccch
Q 013976          164 VFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDN-------------------------EDVGKPV  216 (432)
Q Consensus       164 ~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~-~i~f~~vd~~~-------------------------~~~~~~l  216 (432)
                      ....+++++|.||++| +.|+..++.+.+++++++. .+.|+.|....                         .+-...+
T Consensus        52 ~lskGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~l  131 (521)
T PRK14018         52 YLKKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTL  131 (521)
T ss_pred             eccCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHH
Confidence            3446778899999999 9999999999999999973 46665553210                         0013456


Q ss_pred             hhhhCCCCCCCcEEEEEeCCCCceecCCCCCCHHHHHHHHHHH
Q 013976          217 SEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDF  259 (432)
Q Consensus       217 ~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~  259 (432)
                      .+.|++...  |+.++++.+......+.|.++.+.|..+|+..
T Consensus       132 ak~fgV~gi--PTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~~  172 (521)
T PRK14018        132 AQSLNISVY--PSWAIIGKDGDVQRIVKGSISEAQALALIRNP  172 (521)
T ss_pred             HHHcCCCCc--CeEEEEcCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence            788999877  99988876665667788999999999999943

>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=97.63  E-value=0.00039  Score=50.93  Aligned_cols=100  Identities=11%  Similarity=0.194  Sum_probs=72.4

Q ss_pred             CceeeCCHHHHHHHhhcCCeEEEEEecCCCc--chHHHHHHHh-ccCCCceEEE--eC---cHHHHhHcCCCCCCCCCeE
Q 013976           47 GIYNITTLDEAERVLTSETKVVLGYLNSLVG--SESEVLADAS-RLEDDVNFYQ--TT---NPDVAKIFHLDSKVNRPAL  118 (432)
Q Consensus        47 ~~~~i~~~~~l~~~~~~~~~~vv~f~~~~~~--~~~~~f~~~a-~~~~~~~F~~--~~---~~~~~~~~~~~~~~~~p~i  118 (432)
                      .+..|.+..+++++++.+..++|.|..+...  ...+.|.++| ..++.-+.+.  ..   ...+|+++.+....+...+
T Consensus         2 ~ie~i~d~KdfKKLLRTr~NVLvLy~ks~k~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~   81 (112)
T cd03067           2 LIEDISDHKDFKKLLRTRNNVLVLYSKSAKSAEALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPKPV   81 (112)
T ss_pred             ccccccchHHHHHHHhhcCcEEEEEecchhhHHHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCCcc
Confidence            3457889999999999999999999876553  3677899998 5555444443  22   4579999999843333446


Q ss_pred             EEEecCCCcee-cccCCCCCHHHHHHHHHh
Q 013976          119 VMVKKETEKIS-YFADGKFDKSTIADFVFS  147 (432)
Q Consensus       119 ~l~~~~~~~~~-~y~~g~~~~~~l~~fi~~  147 (432)
                      .+.+..|+..+ .| +...+..+|..|++.
T Consensus        82 ~LkHYKdG~fHkdY-dR~~t~kSmv~FlrD  110 (112)
T cd03067          82 ELKHYKDGDFHTEY-NRQLTFKSMVAFLRD  110 (112)
T ss_pred             hhhcccCCCccccc-cchhhHHHHHHHhhC
Confidence            66666666655 56 777889999999875

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=97.62  E-value=0.00058  Score=57.85  Aligned_cols=91  Identities=19%  Similarity=0.311  Sum_probs=71.4

Q ss_pred             CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCc-eEEEEEecCCcc-------------------cccchhhhhCCCCC
Q 013976          167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNED-------------------VGKPVSEYFGITGE  225 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~-i~f~~vd~~~~~-------------------~~~~l~~~~~i~~~  225 (432)
                      .+++.++.|+++| +.|+...+.+.++++++.+. +.++.++++...                   ....+++.||+...
T Consensus        60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  139 (173)
T PRK03147         60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPL  139 (173)
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCc
Confidence            3456788889999 88999999999999999864 778888775321                   13567899999876


Q ss_pred             CCcEEEEEeCCCCceecCCCCCCHHHHHHHHHHH
Q 013976          226 APKVLAYTGNDDAKKHILDGELTLDKIKTFGEDF  259 (432)
Q Consensus       226 ~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~  259 (432)
                        |++++++.++.....+.|..+.+.+.+++++.
T Consensus       140 --P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~  171 (173)
T PRK03147        140 --PTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI  171 (173)
T ss_pred             --CeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence              99888876655555678889999999998864

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=97.61  E-value=0.00014  Score=57.06  Aligned_cols=93  Identities=16%  Similarity=0.167  Sum_probs=62.6

Q ss_pred             ccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCc---e
Q 013976          165 FESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAK---K  240 (432)
Q Consensus       165 ~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~---~  240 (432)
                      ...+++++|.|+++| ++|+.+.+.+.+.+........|+.+|.+...  ......|++.+...|++++++.++..   .
T Consensus        16 ~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~--~~~~~~~~~~g~~vPt~~f~~~~Gk~~~~~   93 (117)
T cd02959          16 KDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDE--EPKDEEFSPDGGYIPRILFLDPSGDVHPEI   93 (117)
T ss_pred             HHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCC--CchhhhcccCCCccceEEEECCCCCCchhh
Confidence            456677888899999 99999999999987765544567777776532  23457788876346999999754422   2


Q ss_pred             ecCCCCCCHHHHHHHHHHH
Q 013976          241 HILDGELTLDKIKTFGEDF  259 (432)
Q Consensus       241 y~~~~~~~~~~i~~fi~~~  259 (432)
                      +...|..+.+.+..++..+
T Consensus        94 ~~~~~~~~~~~f~~~~~~~  112 (117)
T cd02959          94 INKKGNPNYKYFYSSAAQV  112 (117)
T ss_pred             ccCCCCccccccCCCHHHH
Confidence            3334555555555555444

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>PTZ00256 glutathione peroxidase; Provisional

Probab=97.59  E-value=0.0004  Score=59.42  Aligned_cols=43  Identities=16%  Similarity=0.193  Sum_probs=35.4

Q ss_pred             CCc-EEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCC
Q 013976          297 SKD-VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT  340 (432)
Q Consensus       297 ~~~-~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~  340 (432)
                      +++ +|+++||+||++|...+|.+.++.+.|++. ++.+.-|+++
T Consensus        40 Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~-gv~vv~vs~~   83 (183)
T PTZ00256         40 GKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQ-GLEILAFPCN   83 (183)
T ss_pred             CCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhC-CcEEEEEecc
Confidence            454 456679999999999999999999999864 6888888763

>PRK11200 grxA glutaredoxin 1; Provisional

Probab=97.57  E-value=0.00038  Score=51.25  Aligned_cols=75  Identities=13%  Similarity=0.155  Sum_probs=55.4

Q ss_pred             EEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCcc-----cc---cCCCCCCceEEEEeCCCcccCceecc
Q 013976          300 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE-----HH---RAKSDGFPTILFFPAGNKSFDPINVD  371 (432)
Q Consensus       300 ~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~-----~~---~~~i~~~P~i~~~~~g~~~~~~~~y~  371 (432)
                      -+++|+.+||+.|..+...|++++..+.   ++.+..+|++.+.     ..   ..+..++|+|+  -+|+.+       
T Consensus         2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~---~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~if--i~g~~i-------   69 (85)
T PRK11200          2 FVVIFGRPGCPYCVRAKELAEKLSEERD---DFDYRYVDIHAEGISKADLEKTVGKPVETVPQIF--VDQKHI-------   69 (85)
T ss_pred             EEEEEeCCCChhHHHHHHHHHhhccccc---CCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEE--ECCEEE-------
Confidence            4788999999999999999999987653   4788888887653     11   22457899975  456432       


Q ss_pred             CCCCHHHHHHHHHhcCC
Q 013976          372 VDRTVVALYKFLKKNAS  388 (432)
Q Consensus       372 g~~~~~~l~~fi~~~~~  388 (432)
                      |  ..++|.++++++.+
T Consensus        70 g--g~~~~~~~~~~~~~   84 (85)
T PRK11200         70 G--GCTDFEAYVKENLG   84 (85)
T ss_pred             c--CHHHHHHHHHHhcc
Confidence            2  56788888887764

>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate

Probab=97.56  E-value=0.00016  Score=59.86  Aligned_cols=42  Identities=17%  Similarity=0.202  Sum_probs=37.1

Q ss_pred             CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCC
Q 013976          297 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT  340 (432)
Q Consensus       297 ~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~  340 (432)
                      +++++|.||++||+ |....|.+.++.+.+++. ++.+..|+++
T Consensus        22 Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~-~~~vv~v~~~   63 (152)
T cd00340          22 GKVLLIVNVASKCG-FTPQYEGLEALYEKYKDR-GLVVLGFPCN   63 (152)
T ss_pred             CCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCC-CEEEEEeccC
Confidence            68999999999999 999999999999999864 6888888764

GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.

>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626

Probab=97.53  E-value=0.00039  Score=58.73  Aligned_cols=82  Identities=6%  Similarity=-0.002  Sum_probs=54.0

Q ss_pred             CCcEEEEEeCCCChhhhhhHHHHHHHHHH-hcCCCCEEEEEEeCCCc-------------------c-----------c-
Q 013976          297 SKDVLLEIYAPWCGHCQAFEPTYNKLAKH-LRGVDSIVIAKMDGTTN-------------------E-----------H-  344 (432)
Q Consensus       297 ~~~~lv~f~~~~c~~c~~~~~~~~~la~~-~~~~~~~~~~~id~~~~-------------------~-----------~-  344 (432)
                      ++.+||.|||.||.+|..-.|.+.+|+.+ +.-...-...-||.++.                   +           . 
T Consensus        59 GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g~v~  138 (184)
T TIGR01626        59 GKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKGAVK  138 (184)
T ss_pred             CCEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcchHH
Confidence            78999999999999999999999999643 22100001133333321                   0           0 


Q ss_pred             ccCCCCCCceE-EEE-eCCCcccCceeccCCCCHHHHHH
Q 013976          345 HRAKSDGFPTI-LFF-PAGNKSFDPINVDVDRTVVALYK  381 (432)
Q Consensus       345 ~~~~i~~~P~i-~~~-~~g~~~~~~~~y~g~~~~~~l~~  381 (432)
                      ..+++.+.|+. +++ ++|..+.   .+.|..+.+.+.+
T Consensus       139 ~~~gv~~~P~T~fVIDk~GkVv~---~~~G~l~~ee~e~  174 (184)
T TIGR01626       139 NAWQLNSEDSAIIVLDKTGKVKF---VKEGALSDSDIQT  174 (184)
T ss_pred             HhcCCCCCCceEEEECCCCcEEE---EEeCCCCHHHHHH
Confidence            25688899877 566 6665544   6788877776655

This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.

>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=97.50  E-value=0.00031  Score=58.15  Aligned_cols=103  Identities=21%  Similarity=0.250  Sum_probs=80.3

Q ss_pred             eEEEe-cccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEE
Q 013976          281 VKIVV-GNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILF  357 (432)
Q Consensus       281 v~~l~-~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~  357 (432)
                      ...+. ..+|-+.+ ..+.-|++-||.|.-..|+-|-..++.||+.+-.   ..|++||+...+-  .+++|.-.|++++
T Consensus        68 y~ev~~Ekdf~~~~-~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e---TrFikvnae~~PFlv~kL~IkVLP~v~l  143 (211)
T KOG1672|consen   68 YEEVASEKDFFEEV-KKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE---TRFIKVNAEKAPFLVTKLNIKVLPTVAL  143 (211)
T ss_pred             EEEeccHHHHHHHh-hcCceEEEEEEcCCCcceehHHHHHHHHHHhccc---ceEEEEecccCceeeeeeeeeEeeeEEE
Confidence            44444 46666655 4567899999999999999999999999999876   7999999999888  7999999999999


Q ss_pred             EeCCCcccCceecc--C---CCCHHHHHHHHHhcC
Q 013976          358 FPAGNKSFDPINVD--V---DRTVVALYKFLKKNA  387 (432)
Q Consensus       358 ~~~g~~~~~~~~y~--g---~~~~~~l~~fi~~~~  387 (432)
                      |++|..+...+.|.  |   ..+.+.|..-|-...
T Consensus       144 ~k~g~~~D~iVGF~dLGnkDdF~te~LE~rL~~S~  178 (211)
T KOG1672|consen  144 FKNGKTVDYVVGFTDLGNKDDFTTETLENRLAKSG  178 (211)
T ss_pred             EEcCEEEEEEeeHhhcCCCCcCcHHHHHHHHhhcc
Confidence            99998876445555  2   345555555555444

>PRK13703 conjugal pilus assembly protein TraF; Provisional

Probab=97.47  E-value=0.00074  Score=59.79  Aligned_cols=89  Identities=17%  Similarity=0.117  Sum_probs=67.5

Q ss_pred             CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc-----------ccCCCCCCceEEEEeCCCccc
Q 013976          297 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----------HRAKSDGFPTILFFPAGNKSF  365 (432)
Q Consensus       297 ~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-----------~~~~i~~~P~i~~~~~g~~~~  365 (432)
                      +..-|++||.+.|+.|.++.|++..++..++-  .+..+.+|....+.           .++++..+|++++...+....
T Consensus       143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~--~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~  220 (248)
T PRK13703        143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYGL--SVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSV  220 (248)
T ss_pred             hcceEEEEECCCCchhHHHHHHHHHHHHHhCC--eEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcE
Confidence            34789999999999999999999999999986  57777777533221           368999999999996654321


Q ss_pred             CceeccCCCCHHHHHHHHHhcCC
Q 013976          366 DPINVDVDRTVVALYKFLKKNAS  388 (432)
Q Consensus       366 ~~~~y~g~~~~~~l~~fi~~~~~  388 (432)
                      .|+ -.|..+.+.|.+-|...++
T Consensus       221 ~pv-~~G~iS~deL~~Ri~~v~t  242 (248)
T PRK13703        221 RPL-SYGFITQDDLAKRFLNVST  242 (248)
T ss_pred             EEE-eeccCCHHHHHHHHHHHHh
Confidence            344 3467899888877766543

>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF

Probab=97.46  E-value=0.00054  Score=61.02  Aligned_cols=88  Identities=16%  Similarity=0.138  Sum_probs=65.9

Q ss_pred             CcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc-----------ccCCCCCCceEEEEeCCCcccC
Q 013976          298 KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----------HRAKSDGFPTILFFPAGNKSFD  366 (432)
Q Consensus       298 ~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-----------~~~~i~~~P~i~~~~~g~~~~~  366 (432)
                      +.-|++||...|+.|+++.|++..++..++=  .+..+.+|....+.           .++++..+|++++...+.....
T Consensus       151 ~~gL~fFy~~~C~~C~~~apil~~fa~~ygi--~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~~~  228 (256)
T TIGR02739       151 SYGLFFFYRGKSPISQKMAPVIQAFAKEYGI--SVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQKMS  228 (256)
T ss_pred             ceeEEEEECCCCchhHHHHHHHHHHHHHhCC--eEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCcEE
Confidence            4789999999999999999999999999975  46666666542211           3678999999999966543213


Q ss_pred             ceeccCCCCHHHHHHHHHhcCC
Q 013976          367 PINVDVDRTVVALYKFLKKNAS  388 (432)
Q Consensus       367 ~~~y~g~~~~~~l~~fi~~~~~  388 (432)
                      |+ =.|..+.+.|.+-|...++
T Consensus       229 pv-~~G~iS~deL~~Ri~~v~~  249 (256)
T TIGR02739       229 PL-AYGFISQDELKERILNVLT  249 (256)
T ss_pred             EE-eeccCCHHHHHHHHHHHHh
Confidence            33 3468899888877765543

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.

>TIGR02740 TraF-like TraF-like protein

Probab=97.45  E-value=0.00076  Score=61.27  Aligned_cols=92  Identities=9%  Similarity=0.000  Sum_probs=68.8

Q ss_pred             CCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcc------cccchhhhhCCCCCCCcEEEEEeCCCCce
Q 013976          168 PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED------VGKPVSEYFGITGEAPKVLAYTGNDDAKK  240 (432)
Q Consensus       168 ~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~------~~~~l~~~~~i~~~~~P~i~i~~~~~~~~  240 (432)
                      ++..++.||++| +.|+...+.+.+++++|.-.+..+.+|.....      ....+.+.+||...  |++++++.+++..
T Consensus       166 ~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~v--Ptl~Lv~~~~~~v  243 (271)
T TIGR02740       166 KKSGLFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTV--PAVFLADPDPNQF  243 (271)
T ss_pred             CCeEEEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcC--CeEEEEECCCCEE
Confidence            446788899999 99999999999999999755555656553210      12357889999887  9999998744443


Q ss_pred             ec-CCCCCCHHHHHHHHHHHhc
Q 013976          241 HI-LDGELTLDKIKTFGEDFLE  261 (432)
Q Consensus       241 y~-~~~~~~~~~i~~fi~~~~~  261 (432)
                      .. ..|.++.+.|.+.+.....
T Consensus       244 ~~v~~G~~s~~eL~~~i~~~a~  265 (271)
T TIGR02740       244 TPIGFGVMSADELVDRILLAAH  265 (271)
T ss_pred             EEEEeCCCCHHHHHHHHHHHhc
Confidence            33 4588999999999987654

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>TIGR02180 GRX_euk Glutaredoxin

Probab=97.42  E-value=0.00023  Score=52.18  Aligned_cols=56  Identities=18%  Similarity=0.387  Sum_probs=40.8

Q ss_pred             EEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc-------ccCCCCCCceEEEEeCCC
Q 013976          301 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-------HRAKSDGFPTILFFPAGN  362 (432)
Q Consensus       301 lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-------~~~~i~~~P~i~~~~~g~  362 (432)
                      +++|+++||++|..+.+.+.++.  ...  .+.+..+|.+.+..       ...++.++|++  |-+|.
T Consensus         1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~--~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v--~i~g~   63 (84)
T TIGR02180         1 VVVFSKSYCPYCKKAKEILAKLN--VKP--AYEVVELDQLSNGSEIQDYLEEITGQRTVPNI--FINGK   63 (84)
T ss_pred             CEEEECCCChhHHHHHHHHHHcC--CCC--CCEEEEeeCCCChHHHHHHHHHHhCCCCCCeE--EECCE
Confidence            47899999999999999999986  322  47777777664432       23578899998  44554

This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=97.41  E-value=0.00071  Score=68.33  Aligned_cols=91  Identities=5%  Similarity=0.080  Sum_probs=71.4

Q ss_pred             CCCcceEEEEEeC-cchhhhHHHH---HHHHHhccCceEEEEEecCCcc-cccchhhhhCCCCCCCcEEEEEeCCCCc--
Q 013976          167 SPIKNQLLLFAVS-NDSEKLLPVF---EEAAKSFKGKLIFVYVQMDNED-VGKPVSEYFGITGEAPKVLAYTGNDDAK--  239 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~~~~~~~~~---~~~a~~~~~~i~f~~vd~~~~~-~~~~l~~~~~i~~~~~P~i~i~~~~~~~--  239 (432)
                      +++++++.||++| ..|+.+.+..   .++.+.+++ +.++.+|.++.+ ....+++.|++.+.  |++++++.+...  
T Consensus       473 ~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~-~~~v~vDvt~~~~~~~~l~~~~~v~g~--Pt~~~~~~~G~~i~  549 (571)
T PRK00293        473 KGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALAD-TVLLQADVTANNAEDVALLKHYNVLGL--PTILFFDAQGQEIP  549 (571)
T ss_pred             cCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcC-CEEEEEECCCCChhhHHHHHHcCCCCC--CEEEEECCCCCCcc
Confidence            4667888999999 9999987764   667777765 889999998631 14578899999887  999999754433  


Q ss_pred             eecCCCCCCHHHHHHHHHHHh
Q 013976          240 KHILDGELTLDKIKTFGEDFL  260 (432)
Q Consensus       240 ~y~~~~~~~~~~i~~fi~~~~  260 (432)
                      ...+.|..+.+++.+++++..
T Consensus       550 ~~r~~G~~~~~~f~~~L~~~~  570 (571)
T PRK00293        550 DARVTGFMDAAAFAAHLRQLQ  570 (571)
T ss_pred             cccccCCCCHHHHHHHHHHhc
Confidence            356789999999999998753

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=97.41  E-value=0.0013  Score=51.43  Aligned_cols=93  Identities=16%  Similarity=0.217  Sum_probs=70.4

Q ss_pred             cCCCcceEEEEEeC-cchhhhHH-HH--HHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeC-CCCce
Q 013976          166 ESPIKNQLLLFAVS-NDSEKLLP-VF--EEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGN-DDAKK  240 (432)
Q Consensus       166 ~~~~~~~i~~~~~~-~~~~~~~~-~~--~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~-~~~~~  240 (432)
                      ..+++.+|.++.+| ..|+.+.. .|  .++.+.++.+..+..+|....+ ...+++.|++.+.  |+++++++ +....
T Consensus        15 ~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e-~~~~~~~~~~~~~--P~~~~i~~~~g~~l   91 (114)
T cd02958          15 SEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSE-GQRFLQSYKVDKY--PHIAIIDPRTGEVL   91 (114)
T ss_pred             hhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCcc-HHHHHHHhCccCC--CeEEEEeCccCcEe
Confidence            34556667777888 78998764 33  3466667667888888888655 7788999999887  99999987 55556


Q ss_pred             ecCCCCCCHHHHHHHHHHHhc
Q 013976          241 HILDGELTLDKIKTFGEDFLE  261 (432)
Q Consensus       241 y~~~~~~~~~~i~~fi~~~~~  261 (432)
                      +...|..+.+.+.+-++++..
T Consensus        92 ~~~~G~~~~~~f~~~L~~~~~  112 (114)
T cd02958          92 KVWSGNITPEDLLSQLIEFLE  112 (114)
T ss_pred             EEEcCCCCHHHHHHHHHHHHh
Confidence            677899999998888887653

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI

Probab=97.39  E-value=0.0012  Score=51.24  Aligned_cols=96  Identities=19%  Similarity=0.135  Sum_probs=67.9

Q ss_pred             EEecccchhhhhcCCCcEEEEEe----CCCChhhhhhHHHHHHHHHHhc-CCCCEEEEEEeCCCccc--ccCCCCC----
Q 013976          283 IVVGNNFDEIVLDESKDVLLEIY----APWCGHCQAFEPTYNKLAKHLR-GVDSIVIAKMDGTTNEH--HRAKSDG----  351 (432)
Q Consensus       283 ~l~~~~~~~~~~~~~~~~lv~f~----~~~c~~c~~~~~~~~~la~~~~-~~~~~~~~~id~~~~~~--~~~~i~~----  351 (432)
                      .++.++.....   ..+.++.|+    +..-..-..++..+.++|+.++ +  ++.|+.+|.+....  ..++++.    
T Consensus         3 ~~~~en~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~g--ki~Fv~~D~~~~~~~l~~fgl~~~~~~   77 (111)
T cd03073           3 HRTKDNRAQFT---KKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDR--KLNFAVADKEDFSHELEEFGLDFSGGE   77 (111)
T ss_pred             eeccchHHHhc---cCCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCC--eEEEEEEcHHHHHHHHHHcCCCcccCC
Confidence            34556666653   344444443    2233455778899999999999 6  69999999987655  5677774    


Q ss_pred             CceEEEEeCCCcccCceeccCCC-CHHHHHHHHHhc
Q 013976          352 FPTILFFPAGNKSFDPINVDVDR-TVVALYKFLKKN  386 (432)
Q Consensus       352 ~P~i~~~~~g~~~~~~~~y~g~~-~~~~l~~fi~~~  386 (432)
                      +|.++++..+..  +. .+.+.. +.++|.+|+++.
T Consensus        78 ~P~~~i~~~~~~--KY-~~~~~~~t~e~i~~F~~~f  110 (111)
T cd03073          78 KPVVAIRTAKGK--KY-VMEEEFSDVDALEEFLEDF  110 (111)
T ss_pred             CCEEEEEeCCCC--cc-CCCcccCCHHHHHHHHHHh
Confidence            999999875432  22 256777 999999999874

They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei

>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells

Probab=97.35  E-value=0.00069  Score=53.78  Aligned_cols=46  Identities=26%  Similarity=0.524  Sum_probs=40.1

Q ss_pred             CCCcEEEEEeCC-CChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCc
Q 013976          296 ESKDVLLEIYAP-WCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN  342 (432)
Q Consensus       296 ~~~~~lv~f~~~-~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~  342 (432)
                      .+++++|.||+. ||..|....+.+.++...++.. ++.++.|..+..
T Consensus        24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~-~~~vi~is~d~~   70 (124)
T PF00578_consen   24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDK-GVQVIGISTDDP   70 (124)
T ss_dssp             TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT-TEEEEEEESSSH
T ss_pred             CCCcEEEEEeCccCccccccchhHHHHHhhhhccc-eEEeeecccccc
Confidence            458999999999 9999999999999999999864 788888887654

Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....

>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]

Probab=97.33  E-value=0.0002  Score=57.82  Aligned_cols=69  Identities=23%  Similarity=0.511  Sum_probs=51.0

Q ss_pred             CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCC-C--CEEEEEEeCCCccc-------------------------ccC
Q 013976          296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV-D--SIVIAKMDGTTNEH-------------------------HRA  347 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~-~--~~~~~~id~~~~~~-------------------------~~~  347 (432)
                      .++.+.++|.|.||++|+.+-|.+.++....+++ .  .+.|+.-|-+..+.                         .+|
T Consensus        32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky  111 (157)
T KOG2501|consen   32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY  111 (157)
T ss_pred             CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence            3588999999999999999999999999998874 2  34555444433211                         256


Q ss_pred             CCCCCceEEEE-eCCCcc
Q 013976          348 KSDGFPTILFF-PAGNKS  364 (432)
Q Consensus       348 ~i~~~P~i~~~-~~g~~~  364 (432)
                      .+.+.|++++. ++|..+
T Consensus       112 ~v~~iP~l~i~~~dG~~v  129 (157)
T KOG2501|consen  112 EVKGIPALVILKPDGTVV  129 (157)
T ss_pred             ccCcCceeEEecCCCCEe
Confidence            89999999988 555443

>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]

Probab=97.29  E-value=0.0064  Score=46.73  Aligned_cols=106  Identities=17%  Similarity=0.168  Sum_probs=71.8

Q ss_pred             eeecCCCchhhhccCCCcceEEEEEeCcchhhhHHHHHHHH-Hhcc--CceEEEEEecCCc--ccccchhhhhCCCCCCC
Q 013976          153 VTIFTRENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAA-KSFK--GKLIFVYVQMDNE--DVGKPVSEYFGITGEAP  227 (432)
Q Consensus       153 v~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~a-~~~~--~~i~f~~vd~~~~--~~~~~l~~~~~i~~~~~  227 (432)
                      +..|+.-+|++++...+ .+++=|...-++-.-..+|..+| +...  +.+.++.|.+.++  ..|.+|.++|++.....
T Consensus         6 ~v~LD~~tFdKvi~kf~-~~LVKFD~ayPyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke~f   84 (126)
T PF07912_consen    6 CVPLDELTFDKVIPKFK-YVLVKFDVAYPYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKEDF   84 (126)
T ss_dssp             SEEESTTHHHHHGGGSS-EEEEEEEESS--CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCCC-
T ss_pred             eeeccceehhheeccCc-eEEEEEeccCCCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCcccC
Confidence            56788889999887763 44444444444444456677788 3332  4688888876653  13788999999988778


Q ss_pred             cEEEEEeCCCCceecC--CCCCCHHHHHHHHHHH
Q 013976          228 KVLAYTGNDDAKKHIL--DGELTLDKIKTFGEDF  259 (432)
Q Consensus       228 P~i~i~~~~~~~~y~~--~~~~~~~~i~~fi~~~  259 (432)
                      |++.++..+...+..|  .|+++.++|.+|+...
T Consensus        85 Pv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~  118 (126)
T PF07912_consen   85 PVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSN  118 (126)
T ss_dssp             SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHT
T ss_pred             CEEEEecCCCCCCccCCccCCccHHHHHHHHHhC
Confidence            9999998655555555  8999999999999874

The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.

>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.29  E-value=0.00034  Score=58.88  Aligned_cols=68  Identities=18%  Similarity=0.157  Sum_probs=58.6

Q ss_pred             CCCcceEEEEEeC-cchhhhHHHHHHHHHhccC-ceEEEEEecCCcccccchhhhhCCCCC----CCcEEEEEeCCC
Q 013976          167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNEDVGKPVSEYFGITGE----APKVLAYTGNDD  237 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~-~i~f~~vd~~~~~~~~~l~~~~~i~~~----~~P~i~i~~~~~  237 (432)
                      ....|+|-||+.| +.|....+.+.+++.+|.. .+.|+.+|..-   .++....|+|+..    ++|++.++..+.
T Consensus       143 k~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGr---fpd~a~kfris~s~~srQLPT~ilFq~gk  216 (265)
T KOG0914|consen  143 KRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGR---FPDVAAKFRISLSPGSRQLPTYILFQKGK  216 (265)
T ss_pred             CceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeecc---CcChHHheeeccCcccccCCeEEEEccch
Confidence            3346789999999 9999999999999999985 59999999998   5688999999754    899999987654

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=97.28  E-value=0.0019  Score=46.33  Aligned_cols=72  Identities=13%  Similarity=0.085  Sum_probs=54.4

Q ss_pred             eEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCceecCCCC-CCH
Q 013976          172 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGE-LTL  249 (432)
Q Consensus       172 ~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~-~~~  249 (432)
                      .+.||++| +.|+.+.+.+++++.++...+.|..+|-.      +.+..+|+.+.  |++++  ++  +.. +.|. .+.
T Consensus         2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~~------~~a~~~~v~~v--Pti~i--~G--~~~-~~G~~~~~   68 (76)
T TIGR00412         2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVTDM------NEILEAGVTAT--PGVAV--DG--ELV-IMGKIPSK   68 (76)
T ss_pred             EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeCCH------HHHHHcCCCcC--CEEEE--CC--EEE-EEeccCCH
Confidence            36789999 99999999999999999988888888721      23677899888  99988  22  222 5563 455


Q ss_pred             HHHHHHH
Q 013976          250 DKIKTFG  256 (432)
Q Consensus       250 ~~i~~fi  256 (432)
                      +.+.+++
T Consensus        69 ~~l~~~l   75 (76)
T TIGR00412        69 EEIKEIL   75 (76)
T ss_pred             HHHHHHh
Confidence            7777765

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=97.28  E-value=0.001  Score=52.52  Aligned_cols=97  Identities=14%  Similarity=0.012  Sum_probs=65.0

Q ss_pred             CCchhhhccCCCcceEEEEEeC-cchhhhHH-HH--HHHHHhccCceEEEEEecCCcccccchhh--------hhCCCCC
Q 013976          158 RENAPSVFESPIKNQLLLFAVS-NDSEKLLP-VF--EEAAKSFKGKLIFVYVQMDNEDVGKPVSE--------YFGITGE  225 (432)
Q Consensus       158 ~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~-~~--~~~a~~~~~~i~f~~vd~~~~~~~~~l~~--------~~~i~~~  225 (432)
                      .+.+......++++++.|+++| ..|+.+.+ .+  .+++..+...+.++.+|.++   .+++.+        .+|+.+.
T Consensus         5 ~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~---~~~~~~~~~~~~~~~~~~~G~   81 (124)
T cd02955           5 EEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREE---RPDVDKIYMNAAQAMTGQGGW   81 (124)
T ss_pred             HHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCc---CcHHHHHHHHHHHHhcCCCCC
Confidence            3344455567788888899999 99999876 23  35777776678999999876   345443        2477776


Q ss_pred             CCcEEEEEeCCCCceecCC-----CCCCHHHHHHHHHHH
Q 013976          226 APKVLAYTGNDDAKKHILD-----GELTLDKIKTFGEDF  259 (432)
Q Consensus       226 ~~P~i~i~~~~~~~~y~~~-----~~~~~~~i~~fi~~~  259 (432)
                        |+++++++++...+...     ...+...+..+++.+
T Consensus        82 --Pt~vfl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (124)
T cd02955          82 --PLNVFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEKI  118 (124)
T ss_pred             --CEEEEECCCCCEEeeeeecCCCCcCCCcCHHHHHHHH
Confidence              99999988764443322     234455666666654

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=97.28  E-value=0.0011  Score=46.18  Aligned_cols=55  Identities=4%  Similarity=0.017  Sum_probs=46.4

Q ss_pred             eEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEE
Q 013976          172 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAY  232 (432)
Q Consensus       172 ~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i  232 (432)
                      +.+|+.+| +.|+.+.+.+++++..+ +++.|..+|.++   .+++.+.+|+...  |++++
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~l~~~~-~~i~~~~id~~~---~~~l~~~~~i~~v--Pti~i   58 (67)
T cd02973           3 IEVFVSPTCPYCPDAVQAANRIAALN-PNISAEMIDAAE---FPDLADEYGVMSV--PAIVI   58 (67)
T ss_pred             EEEEECCCCCCcHHHHHHHHHHHHhC-CceEEEEEEccc---CHhHHHHcCCccc--CEEEE
Confidence            46778888 99999999999998875 459999999887   4578999999877  99966

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals

Probab=97.26  E-value=0.0015  Score=50.99  Aligned_cols=91  Identities=9%  Similarity=-0.014  Sum_probs=64.7

Q ss_pred             hcCCCcEEEEEeCC----CChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc----ccCCCCCCceEEEE-eCCCcc
Q 013976          294 LDESKDVLLEIYAP----WCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH----HRAKSDGFPTILFF-PAGNKS  364 (432)
Q Consensus       294 ~~~~~~~lv~f~~~----~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~----~~~~i~~~P~i~~~-~~g~~~  364 (432)
                      ..+.|.++|++|++    ||..|+.... =.++.+.+..  ++.+...|+...+.    ..+++.++|+++++ +.++..
T Consensus        14 k~e~K~llVylhs~~~~~~~~fc~~~l~-~~~v~~~ln~--~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~~   90 (116)
T cd02991          14 KQELRFLLVYLHGDDHQDTDEFCRNTLC-APEVIEYINT--RMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNRM   90 (116)
T ss_pred             HhhCCEEEEEEeCCCCccHHHHHHHHcC-CHHHHHHHHc--CEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCce
Confidence            34568999999999    8888865531 1233344444  69999999998876    46899999999998 222221


Q ss_pred             cCceeccCCCCHHHHHHHHHhcC
Q 013976          365 FDPINVDVDRTVVALYKFLKKNA  387 (432)
Q Consensus       365 ~~~~~y~g~~~~~~l~~fi~~~~  387 (432)
                      .-.-+..|..+.+.|+..|....
T Consensus        91 ~vv~~i~G~~~~~~ll~~L~~~~  113 (116)
T cd02991          91 TIVGRLEGLIQPEDLINRLTFIM  113 (116)
T ss_pred             EEEEEEeCCCCHHHHHHHHHHHH
Confidence            01236889999999999887654

ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.

>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.23  E-value=0.00067  Score=57.79  Aligned_cols=172  Identities=17%  Similarity=0.241  Sum_probs=103.9

Q ss_pred             cCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCceecCC
Q 013976          166 ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILD  244 (432)
Q Consensus       166 ~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~  244 (432)
                      +..+..++.|++.| ..|..+...+..+|+.. .++.|+.++...   .++++..+.+...  |.+..+..+.. .-...
T Consensus        15 ~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~-~~~~~~k~~a~~---~~eis~~~~v~~v--p~~~~~~~~~~-v~~l~   87 (227)
T KOG0911|consen   15 QKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF-KNAQFLKLEAEE---FPEISNLIAVEAV--PYFVFFFLGEK-VDRLS   87 (227)
T ss_pred             hccchhhhhhhhhhhhhhhhHHHHHHHHHHhh-hhheeeeehhhh---hhHHHHHHHHhcC--ceeeeeecchh-hhhhh
Confidence            34445577788999 99999999999999999 559999999988   6699999999988  88877744431 11223


Q ss_pred             CCC---CHHHHHHHHHHHh---cCCcCccccCCCCCCCCCCceEEEecccchhhhhc--CCCcEEEEEe----CCCChhh
Q 013976          245 GEL---TLDKIKTFGEDFL---EGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLD--ESKDVLLEIY----APWCGHC  312 (432)
Q Consensus       245 ~~~---~~~~i~~fi~~~~---~g~l~~~~~se~~p~~~~~~v~~l~~~~~~~~~~~--~~~~~lv~f~----~~~c~~c  312 (432)
                      +..   ....+..+.....   .+...+..+.  .+.....       . .+..+..  +.+++.++.=    .|.|+..
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e--~~~~~~~-------~-~~~~l~~lv~a~~v~lFmKG~p~~P~CGFS  157 (227)
T KOG0911|consen   88 GADPPFLVSKVEKLAESGSASLGMGLSTTIRE--TQTTNET-------D-LDNRLEKLVKAKPVMLFMKGTPEEPKCGFS  157 (227)
T ss_pred             ccCcHHHHHHHHHhhhhcccccCCCCCcchhc--ccccchh-------h-HHHHHHHhcccCeEEEEecCCCCccccccc
Confidence            322   2233333333322   0001111000  0000000       1 2222211  3345555442    4779998


Q ss_pred             hhhHHHHHHHHHHhcCCCCEEEEEEeCCCcccccC---CCCCCceE-EEEeCCC
Q 013976          313 QAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRA---KSDGFPTI-LFFPAGN  362 (432)
Q Consensus       313 ~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~~~~---~i~~~P~i-~~~~~g~  362 (432)
                      +++..++...        ++.+...|+..++.-+.   ..+.+||+ -+|-+|.
T Consensus       158 ~~~v~iL~~~--------nV~~~~fdIL~DeelRqglK~fSdWPTfPQlyI~GE  203 (227)
T KOG0911|consen  158 RQLVGILQSH--------NVNYTIFDVLTDEELRQGLKEFSDWPTFPQLYVKGE  203 (227)
T ss_pred             HHHHHHHHHc--------CCCeeEEeccCCHHHHHHhhhhcCCCCccceeECCE
Confidence            8887777665        67799999888877443   34466776 6677773

>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]

Probab=97.20  E-value=0.0034  Score=52.25  Aligned_cols=132  Identities=18%  Similarity=0.218  Sum_probs=97.2

Q ss_pred             HHHHHHhcCCcCccccCCCCCCCCCCceEEEecccchhhhhcCC--CcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCC
Q 013976          254 TFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDES--KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDS  331 (432)
Q Consensus       254 ~fi~~~~~g~l~~~~~se~~p~~~~~~v~~l~~~~~~~~~~~~~--~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~  331 (432)
                      .|++.|...++..+.....  ...-|.|..+++..|...|...+  -.|+|-.|..+-..|.-+...+..||.+|..   
T Consensus        68 rfLE~YR~kRl~E~r~~~~--k~kfG~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~---  142 (240)
T KOG3170|consen   68 RFLEMYRIKRLAEWRATAE--KAKFGEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ---  142 (240)
T ss_pred             HHHHHHHHHHHHHHHHHHH--HhcccceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCc---
Confidence            4788877766543322111  11257899999999999886554  3578888999999999999999999999987   


Q ss_pred             EEEEEEeCCCcccccCCCCCCceEEEEeCCCccc---CceeccC-CCCHHHHHHHHHhcCCCCC
Q 013976          332 IVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSF---DPINVDV-DRTVVALYKFLKKNASIPF  391 (432)
Q Consensus       332 ~~~~~id~~~~~~~~~~i~~~P~i~~~~~g~~~~---~~~~y~g-~~~~~~l~~fi~~~~~~~~  391 (432)
                      ++|++|-... -++.|.-...||+++|..|....   .+..+-| ..+.+++..+|-+.....-
T Consensus       143 iKFVki~at~-cIpNYPe~nlPTl~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~qaga~l~  205 (240)
T KOG3170|consen  143 IKFVKIPATT-CIPNYPESNLPTLLVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQAGAALT  205 (240)
T ss_pred             ceEEeccccc-ccCCCcccCCCeEEEeecchHHhheehhhhhcCCcCCHHHHHHHHHhcccccc
Confidence            8888876432 34678888999999999986543   2334555 5688999999888775443

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=97.18  E-value=0.0052  Score=50.57  Aligned_cols=90  Identities=9%  Similarity=0.117  Sum_probs=61.4

Q ss_pred             CCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCc-cc------ccchh-hhh---CCCCCCCcEEEEEeC
Q 013976          168 PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNE-DV------GKPVS-EYF---GITGEAPKVLAYTGN  235 (432)
Q Consensus       168 ~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~-~~------~~~l~-~~~---~i~~~~~P~i~i~~~  235 (432)
                      +...++.||++| +.|++..+.+.++++++.-.+..+.+|.... .+      ..... ..+   ++...  |+.++++.
T Consensus        50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~i--PTt~LID~  127 (153)
T TIGR02738        50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQFGLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVT--PATFLVNV  127 (153)
T ss_pred             CCCEEEEEECCCChhHHHHHHHHHHHHHHcCCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCC--CeEEEEeC
Confidence            334588899999 9999999999999999854444444443210 00      01222 334   55555  99999987


Q ss_pred             CCCcee-cCCCCCCHHHHHHHHHHH
Q 013976          236 DDAKKH-ILDGELTLDKIKTFGEDF  259 (432)
Q Consensus       236 ~~~~~y-~~~~~~~~~~i~~fi~~~  259 (432)
                      +++..+ ...|.++.+.+.+.+...
T Consensus       128 ~G~~i~~~~~G~~s~~~l~~~I~~l  152 (153)
T TIGR02738       128 NTRKAYPVLQGAVDEAELANRMDEI  152 (153)
T ss_pred             CCCEEEEEeecccCHHHHHHHHHHh
Confidence            755433 467899999998888765

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>KOG3425 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.18  E-value=0.0031  Score=47.91  Aligned_cols=73  Identities=21%  Similarity=0.413  Sum_probs=53.0

Q ss_pred             ccchhhhh--cCCCcEEEEEeC--------CCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc---------ccC
Q 013976          287 NNFDEIVL--DESKDVLLEIYA--------PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH---------HRA  347 (432)
Q Consensus       287 ~~~~~~~~--~~~~~~lv~f~~--------~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~---------~~~  347 (432)
                      ++|++.+.  .+++-++|+|++        +||..|.+..|.+.+.-+....  ++.|+++++..-+.         ...
T Consensus        13 e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~--~~~~v~v~VG~rp~Wk~p~n~FR~d~   90 (128)
T KOG3425|consen   13 ESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPE--DVHFVHVYVGNRPYWKDPANPFRKDP   90 (128)
T ss_pred             HHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCC--ceEEEEEEecCCCcccCCCCccccCC
Confidence            34454442  233448888875        5999999999999999886666  79999999876433         123


Q ss_pred             C-CCCCceEEEEeCC
Q 013976          348 K-SDGFPTILFFPAG  361 (432)
Q Consensus       348 ~-i~~~P~i~~~~~g  361 (432)
                      . ++.+||++=|.++
T Consensus        91 ~~lt~vPTLlrw~~~  105 (128)
T KOG3425|consen   91 GILTAVPTLLRWKRQ  105 (128)
T ss_pred             CceeecceeeEEcCc
Confidence            3 4899999999853

>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

Probab=97.18  E-value=0.00091  Score=54.42  Aligned_cols=44  Identities=16%  Similarity=0.267  Sum_probs=35.7

Q ss_pred             CCcEEEEEe-CCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCC
Q 013976          297 SKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT  341 (432)
Q Consensus       297 ~~~~lv~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~  341 (432)
                      ++.++|+|| +.||..|....+.+.++...+... ++.++.|..+.
T Consensus        23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~-~~~vv~is~d~   67 (140)
T cd03017          23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKAL-GAVVIGVSPDS   67 (140)
T ss_pred             CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHC-CCEEEEEcCCC
Confidence            678999999 589999999999999999988753 57777776543

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w

>smart00594 UAS UAS domain

Probab=97.13  E-value=0.002  Score=51.05  Aligned_cols=88  Identities=18%  Similarity=0.284  Sum_probs=65.5

Q ss_pred             cCCCcceEEEEEeC-cchhhhHHH-HH--HHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCc--
Q 013976          166 ESPIKNQLLLFAVS-NDSEKLLPV-FE--EAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAK--  239 (432)
Q Consensus       166 ~~~~~~~i~~~~~~-~~~~~~~~~-~~--~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~--  239 (432)
                      ..++..+|+++++| .+|+.+... |.  ++.+-++.++.+..+|....+ +..++..|+++++  |++++++...+.  
T Consensus        25 ~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~e-g~~l~~~~~~~~~--P~~~~l~~~~g~~~  101 (122)
T smart00594       25 RQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSE-GQRVSQFYKLDSF--PYVAIVDPRTGQRV  101 (122)
T ss_pred             hhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChh-HHHHHHhcCcCCC--CEEEEEecCCCcee
Confidence            45556778888888 888887543 22  255555567888888988776 7889999999987  999999876532  


Q ss_pred             ---eecCCCCCCHHHHHHHH
Q 013976          240 ---KHILDGELTLDKIKTFG  256 (432)
Q Consensus       240 ---~y~~~~~~~~~~i~~fi  256 (432)
                         .....|..+.+.+..++
T Consensus       102 ~~~~~~~~G~~~~~~l~~~l  121 (122)
T smart00594      102 IEWVGVVEGEISPEELMTFL  121 (122)
T ss_pred             EEEeccccCCCCHHHHHHhh
Confidence               23467889999988876

>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

Probab=97.13  E-value=0.0033  Score=53.22  Aligned_cols=91  Identities=15%  Similarity=0.032  Sum_probs=65.7

Q ss_pred             cCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcc--------------------cccchhhhhCCCC
Q 013976          166 ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED--------------------VGKPVSEYFGITG  224 (432)
Q Consensus       166 ~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~--------------------~~~~l~~~~~i~~  224 (432)
                      ..+++.++.||++| +.|+...+.+.+++++   .+.++.++.+...                    ....+.+.|++.+
T Consensus        61 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~---~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~  137 (173)
T TIGR00385        61 IQGKPVLLNVWASWCPPCRAEHPYLNELAKD---GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYG  137 (173)
T ss_pred             cCCCEEEEEEECCcCHHHHHHHHHHHHHHHc---CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCee
Confidence            34667888899999 9999999999888764   2555555542210                    0224556677766


Q ss_pred             CCCcEEEEEeCCCCceecCCCCCCHHHHHHHHHHHhc
Q 013976          225 EAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  261 (432)
Q Consensus       225 ~~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  261 (432)
                      .  |+.++++.++...+.+.|..+.+.+.+++++++.
T Consensus       138 ~--P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~~  172 (173)
T TIGR00385       138 A--PETFLVDGNGVILYRHAGPLNNEVWTEGFLPAME  172 (173)
T ss_pred             C--CeEEEEcCCceEEEEEeccCCHHHHHHHHHHHhh
Confidence            5  9777777666567778899999999999999873

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.

>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.12  E-value=0.0055  Score=48.99  Aligned_cols=89  Identities=18%  Similarity=0.269  Sum_probs=63.2

Q ss_pred             cCCCcEEEEEeCCCChhhhhhHHHHH---HHHHHhcCCCCEEEEEEeCCCccc------------------ccCCCCCCc
Q 013976          295 DESKDVLLEIYAPWCGHCQAFEPTYN---KLAKHLRGVDSIVIAKMDGTTNEH------------------HRAKSDGFP  353 (432)
Q Consensus       295 ~~~~~~lv~f~~~~c~~c~~~~~~~~---~la~~~~~~~~~~~~~id~~~~~~------------------~~~~i~~~P  353 (432)
                      ..++..+++|-++.|..|..+...+.   ++-+.+..  ++.++++|++....                  ..+.++++|
T Consensus        40 ~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~--hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstP  117 (182)
T COG2143          40 PNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKE--HFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTP  117 (182)
T ss_pred             ccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhh--CeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCc
Confidence            44678999999999999999876643   44455555  68888888775322                  246999999


Q ss_pred             eEEEE-eCCCcccCceeccCCCCHHHHHHHHHhcCC
Q 013976          354 TILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNAS  388 (432)
Q Consensus       354 ~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  388 (432)
                      ++++| +.|+.+.   ..-|-...++....++-.+.
T Consensus       118 tfvFfdk~Gk~Il---~lPGY~ppe~Fl~vlkYVa~  150 (182)
T COG2143         118 TFVFFDKTGKTIL---ELPGYMPPEQFLAVLKYVAD  150 (182)
T ss_pred             eEEEEcCCCCEEE---ecCCCCCHHHHHHHHHHHHH
Confidence            99999 4555543   55677777766665554443

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=97.12  E-value=0.003  Score=48.86  Aligned_cols=75  Identities=17%  Similarity=0.193  Sum_probs=56.7

Q ss_pred             CCcceEEEEEeC-cchhhhHHHHHHHHHhcc-CceEEEEEecCCc--------------------ccccchhhhhCCCCC
Q 013976          168 PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFK-GKLIFVYVQMDNE--------------------DVGKPVSEYFGITGE  225 (432)
Q Consensus       168 ~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~-~~i~f~~vd~~~~--------------------~~~~~l~~~~~i~~~  225 (432)
                      +++.+++|+..| +.|+...+.+.++..++. ..+.++.++++..                    +-...+.+.||+...
T Consensus        19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (116)
T cd02966          19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRGL   98 (116)
T ss_pred             CCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCcc
Confidence            556788888999 899999999999999996 3588888888762                    001467888898876


Q ss_pred             CCcEEEEEeCCCCceecCC
Q 013976          226 APKVLAYTGNDDAKKHILD  244 (432)
Q Consensus       226 ~~P~i~i~~~~~~~~y~~~  244 (432)
                        |.+++++.+....+.+.
T Consensus        99 --P~~~l~d~~g~v~~~~~  115 (116)
T cd02966          99 --PTTFLIDRDGRIRARHV  115 (116)
T ss_pred             --ceEEEECCCCcEEEEec
Confidence              98888876654444443

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile

Probab=97.09  E-value=0.0011  Score=46.90  Aligned_cols=65  Identities=12%  Similarity=0.183  Sum_probs=44.0

Q ss_pred             EEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccC----CCCCCceEEEEeCCCcccCceeccCCC
Q 013976          301 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRA----KSDGFPTILFFPAGNKSFDPINVDVDR  374 (432)
Q Consensus       301 lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~----~i~~~P~i~~~~~g~~~~~~~~y~g~~  374 (432)
                      +++|+++||++|..+...+.+.        ++.+..+|++.+..  ..+    .+..+|++++  +|.      ...| .
T Consensus         2 v~l~~~~~c~~c~~~~~~l~~~--------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~~------~i~g-~   64 (73)
T cd02976           2 VTVYTKPDCPYCKATKRFLDER--------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GDE------HLSG-F   64 (73)
T ss_pred             EEEEeCCCChhHHHHHHHHHHC--------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CCE------EEec-C
Confidence            5789999999999988877763        46667777765443  222    5789999976  332      3333 5


Q ss_pred             CHHHHHHH
Q 013976          375 TVVALYKF  382 (432)
Q Consensus       375 ~~~~l~~f  382 (432)
                      +.+.|.++
T Consensus        65 ~~~~l~~~   72 (73)
T cd02976          65 RPDKLRAL   72 (73)
T ss_pred             CHHHHHhh
Confidence            56666655

In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou

>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A

Probab=97.07  E-value=0.00084  Score=53.49  Aligned_cols=62  Identities=23%  Similarity=0.434  Sum_probs=39.7

Q ss_pred             CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--c---cCCCCCCceEEEEeCC
Q 013976          297 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--H---RAKSDGFPTILFFPAG  361 (432)
Q Consensus       297 ~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~---~~~i~~~P~i~~~~~g  361 (432)
                      ....++.|..+||+.|....|.+.+++....   ++.+-.+..+.+..  .   ..+..++|+++++.++
T Consensus        41 ~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p---~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~  107 (129)
T PF14595_consen   41 KPYNILVITETWCGDCARNVPVLAKIAEANP---NIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKD  107 (129)
T ss_dssp             S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T---TEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT
T ss_pred             CCcEEEEEECCCchhHHHHHHHHHHHHHhCC---CCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCC
Confidence            3457888999999999999999999999864   35555555554444  2   2578899999999554

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A

Probab=97.00  E-value=0.0026  Score=47.83  Aligned_cols=43  Identities=28%  Similarity=0.423  Sum_probs=35.4

Q ss_pred             CCcceEEEEEeC-cchhhhHHHHHHHHHhcc--CceEEEEEecCCc
Q 013976          168 PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFK--GKLIFVYVQMDNE  210 (432)
Q Consensus       168 ~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~--~~i~f~~vd~~~~  210 (432)
                      |++.++.|+++| ++|....+.+.++.++|+  +++.|+.|..+..
T Consensus         1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~   46 (95)
T PF13905_consen    1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDED   46 (95)
T ss_dssp             TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSS
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCC
Confidence            456788899999 889999999999999999  6788888877753

...

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=97.00  E-value=0.0033  Score=50.15  Aligned_cols=82  Identities=16%  Similarity=0.087  Sum_probs=57.8

Q ss_pred             CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCc--------------------ccccchhhhhCCCCC
Q 013976          167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNE--------------------DVGKPVSEYFGITGE  225 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~--------------------~~~~~l~~~~~i~~~  225 (432)
                      .+++.++.||++| +.|....+.+.++++++.  +.++.++.+..                    +....+++.|++...
T Consensus        24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~--~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~  101 (127)
T cd03010          24 KGKPYLLNVWASWCAPCREEHPVLMALARQGR--VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGV  101 (127)
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC--cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCCC
Confidence            3567788899999 899999999999998873  55665553210                    013456777888776


Q ss_pred             CCcEEEEEeCCCCceecCCCCCCHHHH
Q 013976          226 APKVLAYTGNDDAKKHILDGELTLDKI  252 (432)
Q Consensus       226 ~~P~i~i~~~~~~~~y~~~~~~~~~~i  252 (432)
                        |+.++++.++...+.+.|.++.+.|
T Consensus       102 --P~~~~ld~~G~v~~~~~G~~~~~~~  126 (127)
T cd03010         102 --PETFLIDGDGIIRYKHVGPLTPEVW  126 (127)
T ss_pred             --CeEEEECCCceEEEEEeccCChHhc
Confidence              9777776665556677787776654

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>TIGR02183 GRXA Glutaredoxin, GrxA family

Probab=96.98  E-value=0.0025  Score=46.93  Aligned_cols=76  Identities=16%  Similarity=0.169  Sum_probs=51.6

Q ss_pred             EEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc------ccC--CCCCCceEEEEeCCCcccCceecc
Q 013976          300 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------HRA--KSDGFPTILFFPAGNKSFDPINVD  371 (432)
Q Consensus       300 ~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~------~~~--~i~~~P~i~~~~~g~~~~~~~~y~  371 (432)
                      ++++|..+||++|.++...|.++.....   .+.+..+|++....      ...  ...++|.|.  -+|..       .
T Consensus         1 ~V~vys~~~Cp~C~~ak~~L~~~~~~~~---~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~if--i~g~~-------i   68 (86)
T TIGR02183         1 FVVIFGRPGCPYCVRAKQLAEKLAIERA---DFEFRYIDIHAEGISKADLEKTVGKPVETVPQIF--VDEKH-------V   68 (86)
T ss_pred             CEEEEeCCCCccHHHHHHHHHHhCcccC---CCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEE--ECCEE-------e
Confidence            3688999999999999888888754432   36777778764331      122  247899984  35533       2


Q ss_pred             CCCCHHHHHHHHHhcCCC
Q 013976          372 VDRTVVALYKFLKKNASI  389 (432)
Q Consensus       372 g~~~~~~l~~fi~~~~~~  389 (432)
                      |  ..++|.++++++.+.
T Consensus        69 g--G~~dl~~~~~~~~~~   84 (86)
T TIGR02183        69 G--GCTDFEQLVKENFDI   84 (86)
T ss_pred             c--CHHHHHHHHHhcccc
Confidence            2  457888888887654

This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=96.96  E-value=0.0049  Score=48.80  Aligned_cols=83  Identities=11%  Similarity=0.119  Sum_probs=59.2

Q ss_pred             CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCC------------------cccccchhhhhCCCCCCC
Q 013976          167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDN------------------EDVGKPVSEYFGITGEAP  227 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~------------------~~~~~~l~~~~~i~~~~~  227 (432)
                      .+++.++.||++| +.|+.+.+.+..+++++.  +..+.+|..+                  .+....+++.|++...  
T Consensus        19 ~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~--   94 (123)
T cd03011          19 SGKPVLVYFWATWCPVCRFTSPTVNQLAADYP--VVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSVT--   94 (123)
T ss_pred             CCCEEEEEEECCcChhhhhhChHHHHHHhhCC--EEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCcc--
Confidence            4467788899999 999999999999888743  2222222210                  0013468889999887  


Q ss_pred             cEEEEEeCCCCceecCCCCCCHHHHHH
Q 013976          228 KVLAYTGNDDAKKHILDGELTLDKIKT  254 (432)
Q Consensus       228 P~i~i~~~~~~~~y~~~~~~~~~~i~~  254 (432)
                      |++++++.++ ..+...|..+.+.|.+
T Consensus        95 P~~~vid~~g-i~~~~~g~~~~~~~~~  120 (123)
T cd03011          95 PAIVIVDPGG-IVFVTTGVTSEWGLRL  120 (123)
T ss_pred             cEEEEEcCCC-eEEEEeccCCHHHHHh
Confidence            9999998776 7777888888887754

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=96.94  E-value=0.03  Score=56.38  Aligned_cols=180  Identities=11%  Similarity=0.087  Sum_probs=119.4

Q ss_pred             HHHHHHhh--cCCeEEEEEecCC-CcchHHHHH-HHhccCCCceEEEeCcHHHHhHcCCCCCCCCCeEEEEecCCCceec
Q 013976           55 DEAERVLT--SETKVVLGYLNSL-VGSESEVLA-DASRLEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKISY  130 (432)
Q Consensus        55 ~~l~~~~~--~~~~~vv~f~~~~-~~~~~~~f~-~~a~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~i~l~~~~~~~~~~  130 (432)
                      ++|+.++.  .+++.++.|.++. ...+.+.|. +++.+.+.+.+-.....        .   ..|++.+.+........
T Consensus         8 ~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~~~--------~---~~p~~~~~~~~~~~~i~   76 (517)
T PRK15317          8 TQLKQYLELLERPIELVASLDDSEKSAELKELLEEIASLSDKITVEEDSLD--------V---RKPSFSITRPGEDTGVR   76 (517)
T ss_pred             HHHHHHHHhCCCCEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEccCC--------C---CCCEEEEEcCCccceEE
Confidence            45555554  3566666666531 123455555 57777777777553321        1   14999998754445678


Q ss_pred             ccCCCCCHHHHHHHHHh---cCCCceeecCCCchhhhccCCCcceEE-EEEeC-cchhhhHHHHHHHHHhccCceEEEEE
Q 013976          131 FADGKFDKSTIADFVFS---NKLPLVTIFTRENAPSVFESPIKNQLL-LFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYV  205 (432)
Q Consensus       131 y~~g~~~~~~l~~fi~~---~~~p~v~~l~~~~~~~~~~~~~~~~i~-~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~v  205 (432)
                      | .|--.-.++.+||..   .+-+ -..++++....+-.-.++..+. |+.+. +.|......+.++|.... +|.+-.+
T Consensus        77 f-~g~P~g~Ef~s~i~~i~~~~~~-~~~l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~-~i~~~~i  153 (517)
T PRK15317         77 F-AGIPMGHEFTSLVLALLQVGGH-PPKLDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNP-NITHTMI  153 (517)
T ss_pred             E-EecCccHHHHHHHHHHHHhcCC-CCCCCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC-CceEEEE
Confidence            8 887777788888753   2333 4455666666554444455444 55555 899999999999999755 6999999


Q ss_pred             ecCCcccccchhhhhCCCCCCCcEEEEEeCCCCceecCCCCCCHHHHHHHHHH
Q 013976          206 QMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGED  258 (432)
Q Consensus       206 d~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~  258 (432)
                      |...   ++++.+.|++...  |++++.  +  . ..+.|..+.+.+.+.+..
T Consensus       154 d~~~---~~~~~~~~~v~~V--P~~~i~--~--~-~~~~g~~~~~~~~~~~~~  196 (517)
T PRK15317        154 DGAL---FQDEVEARNIMAV--PTVFLN--G--E-EFGQGRMTLEEILAKLDT  196 (517)
T ss_pred             Echh---CHhHHHhcCCccc--CEEEEC--C--c-EEEecCCCHHHHHHHHhc
Confidence            9988   6799999999877  999663  1  1 235677788766666655

>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold

Probab=96.89  E-value=0.0024  Score=52.03  Aligned_cols=47  Identities=15%  Similarity=0.210  Sum_probs=39.2

Q ss_pred             CCCcEEEEEeCCCChh-hhhhHHHHHHHHHHhcCCC--CEEEEEEeCCCc
Q 013976          296 ESKDVLLEIYAPWCGH-CQAFEPTYNKLAKHLRGVD--SIVIAKMDGTTN  342 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~-c~~~~~~~~~la~~~~~~~--~~~~~~id~~~~  342 (432)
                      .++.++|.||++||.. |....+.+.++...++...  ++.+..|.++..
T Consensus        21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~   70 (142)
T cd02968          21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPE   70 (142)
T ss_pred             CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCC
Confidence            4678999999999998 9999999999999997642  588888876543

Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=96.86  E-value=0.0085  Score=51.32  Aligned_cols=91  Identities=9%  Similarity=0.021  Sum_probs=66.1

Q ss_pred             CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcc-------------c-------ccchhhhhCCCCC
Q 013976          167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED-------------V-------GKPVSEYFGITGE  225 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~-------------~-------~~~l~~~~~i~~~  225 (432)
                      .+++.++.||++| +.|+...+.+.+++.+   .+.++.++.++..             +       ...+...||+.+.
T Consensus        67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~---~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~  143 (185)
T PRK15412         67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ---GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGA  143 (185)
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHc---CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcC
Confidence            5667788899999 9999999999988753   3666666543311             0       1123346777666


Q ss_pred             CCcEEEEEeCCCCceecCCCCCCHHHHHHHHHHHhcC
Q 013976          226 APKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEG  262 (432)
Q Consensus       226 ~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g  262 (432)
                        |+.++++.+....+...|..+.+.+.+.++..++.
T Consensus       144 --P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~~  178 (185)
T PRK15412        144 --PETFLIDGNGIIRYRHAGDLNPRVWESEIKPLWEK  178 (185)
T ss_pred             --CeEEEECCCceEEEEEecCCCHHHHHHHHHHHHHH
Confidence              97778876665677788999999999999998764

>PRK10606 btuE putative glutathione peroxidase; Provisional

Probab=96.75  E-value=0.0029  Score=53.77  Aligned_cols=43  Identities=14%  Similarity=0.169  Sum_probs=37.3

Q ss_pred             CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCC
Q 013976          297 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT  341 (432)
Q Consensus       297 ~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~  341 (432)
                      ++++||.|||+||+.|.+ .+.|++|...|++. ++.+.-+.|..
T Consensus        25 GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~-gl~Vlg~p~nq   67 (183)
T PRK10606         25 GNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQ-GFVVLGFPCNQ   67 (183)
T ss_pred             CCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhC-CeEEEEeeccc
Confidence            589999999999999975 78999999999864 68898898853

>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.75  E-value=0.00092  Score=56.97  Aligned_cols=72  Identities=17%  Similarity=0.332  Sum_probs=63.0

Q ss_pred             cCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCcccCceeccC
Q 013976          295 DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDV  372 (432)
Q Consensus       295 ~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~~~g~~~~~~~~y~g  372 (432)
                      ...+..++.||++||..|+++..++..+++..+   ++.|++++++..+.  ..+.+...|.++++..|.++.   +..|
T Consensus        15 ~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~---~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~~~v~---~l~~   88 (227)
T KOG0911|consen   15 QKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFK---NAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLGEKVD---RLSG   88 (227)
T ss_pred             hccchhhhhhhhhhhhhhhhHHHHHHHHHHhhh---hheeeeehhhhhhHHHHHHHHhcCceeeeeecchhhh---hhhc
Confidence            456789999999999999999999999999993   69999999998877  688999999999998888775   4555

>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=96.72  E-value=0.0027  Score=43.13  Aligned_cols=49  Identities=14%  Similarity=0.304  Sum_probs=39.1

Q ss_pred             EEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--c---c-CCCCCCceEEE
Q 013976          301 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--H---R-AKSDGFPTILF  357 (432)
Q Consensus       301 lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~---~-~~i~~~P~i~~  357 (432)
                      +++|..+||++|..+...|++.        ++.+..+|++..+.  +   . .+..++|++.+
T Consensus         1 V~vy~~~~C~~C~~~~~~L~~~--------~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i   55 (60)
T PF00462_consen    1 VVVYTKPGCPYCKKAKEFLDEK--------GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI   55 (60)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHT--------TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE
T ss_pred             cEEEEcCCCcCHHHHHHHHHHc--------CCeeeEcccccchhHHHHHHHHcCCCccCEEEE
Confidence            5789999999999998888555        58888889888743  2   2 38899999886

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....

>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs

Probab=96.66  E-value=0.0045  Score=50.82  Aligned_cols=46  Identities=15%  Similarity=0.264  Sum_probs=36.4

Q ss_pred             CcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc
Q 013976          298 KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH  344 (432)
Q Consensus       298 ~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~  344 (432)
                      ..+|++|++.||..|+...+.+.++...+... ++.++.|+.+....
T Consensus        25 ~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~-~v~vv~V~~~~~~~   70 (149)
T cd02970          25 PVVVVFYRGFGCPFCREYLRALSKLLPELDAL-GVELVAVGPESPEK   70 (149)
T ss_pred             CEEEEEECCCCChhHHHHHHHHHHHHHHHHhc-CeEEEEEeCCCHHH
Confidence            34455556999999999999999999999753 68888888766544

Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.

>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed

Probab=96.65  E-value=0.0055  Score=50.75  Aligned_cols=45  Identities=13%  Similarity=0.239  Sum_probs=35.8

Q ss_pred             CCCcEEEEEeCC-CChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCC
Q 013976          296 ESKDVLLEIYAP-WCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT  341 (432)
Q Consensus       296 ~~~~~lv~f~~~-~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~  341 (432)
                      .++.+||.||+. ||..|....+.+.++...+++. ++.++.|+.+.
T Consensus        29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~-~v~vi~Is~d~   74 (154)
T PRK09437         29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKA-GVVVLGISTDK   74 (154)
T ss_pred             CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHC-CCEEEEEcCCC
Confidence            457899999976 6778999999999999998763 57777777653

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=96.64  E-value=0.075  Score=53.47  Aligned_cols=182  Identities=11%  Similarity=0.101  Sum_probs=119.2

Q ss_pred             HHHHHHhh--cCCeEEEEEecCC-CcchHHHHH-HHhccCCCceEEEeCcHHHHhHcCCCCCCCCCeEEEEecCCCceec
Q 013976           55 DEAERVLT--SETKVVLGYLNSL-VGSESEVLA-DASRLEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKISY  130 (432)
Q Consensus        55 ~~l~~~~~--~~~~~vv~f~~~~-~~~~~~~f~-~~a~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~i~l~~~~~~~~~~  130 (432)
                      ++|+.++.  .+++.++.|.++. ...+.+.|. +++.+.+.+.+-.....       ..   ..|++.+.+........
T Consensus         8 ~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~ki~~~~~~~~-------~~---~~p~~~~~~~~~~~~i~   77 (515)
T TIGR03140         8 AQLKSYLASLENPVTLVLSAGSHEKSKELLELLDEIASLSDKISLTQNTAD-------TL---RKPSFTILRDGADTGIR   77 (515)
T ss_pred             HHHHHHHHhcCCCEEEEEEeCCCchhHHHHHHHHHHHHhCCCeEEEEecCC-------cC---CCCeEEEecCCcccceE
Confidence            44555544  3566666666531 123455555 57777777777442211       11   24999888654445678


Q ss_pred             ccCCCCCHHHHHHHHHh---cCCCceeecCCCchhhhccCCCcceEE-EEEeC-cchhhhHHHHHHHHHhccCceEEEEE
Q 013976          131 FADGKFDKSTIADFVFS---NKLPLVTIFTRENAPSVFESPIKNQLL-LFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYV  205 (432)
Q Consensus       131 y~~g~~~~~~l~~fi~~---~~~p~v~~l~~~~~~~~~~~~~~~~i~-~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~v  205 (432)
                      | .|--.-.++.+||..   .+-+ -..++++....+-.-..+..+. |..+. +.|......+.++|.... +|..-.+
T Consensus        78 f-~g~P~g~Ef~s~i~~i~~~~~~-~~~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p-~i~~~~i  154 (515)
T TIGR03140        78 F-AGIPGGHEFTSLVLAILQVGGH-GPKLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNP-NISHTMI  154 (515)
T ss_pred             E-EecCCcHHHHHHHHHHHHhcCC-CCCCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC-CceEEEE
Confidence            8 787777777777753   3334 3566777766665444455444 45555 899999999999999876 5888899


Q ss_pred             ecCCcccccchhhhhCCCCCCCcEEEEEeCCCCceecCCCCCCHHHHHHHHHHH
Q 013976          206 QMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDF  259 (432)
Q Consensus       206 d~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~  259 (432)
                      |+..   ++++.+.|++...  |++++.  +  . ..+.|..+.+.+.+.+...
T Consensus       155 d~~~---~~~~~~~~~v~~V--P~~~i~--~--~-~~~~g~~~~~~~~~~l~~~  198 (515)
T TIGR03140       155 DGAL---FQDEVEALGIQGV--PAVFLN--G--E-EFHNGRMDLAELLEKLEET  198 (515)
T ss_pred             Echh---CHHHHHhcCCccc--CEEEEC--C--c-EEEecCCCHHHHHHHHhhc
Confidence            9988   6799999999876  999663  1  1 2356777887776666554

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK10329 glutaredoxin-like protein; Provisional

Probab=96.61  E-value=0.0095  Score=43.20  Aligned_cols=71  Identities=6%  Similarity=0.032  Sum_probs=52.1

Q ss_pred             EEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc-----ccCCCCCCceEEEEeCCCcccCceeccCCCC
Q 013976          301 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----HRAKSDGFPTILFFPAGNKSFDPINVDVDRT  375 (432)
Q Consensus       301 lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-----~~~~i~~~P~i~~~~~g~~~~~~~~y~g~~~  375 (432)
                      +.+|..+||.+|..++..|.+.        ++.|-.+|++.+..     ...+...+|.+++  ++.      ... +.+
T Consensus         3 v~lYt~~~Cp~C~~ak~~L~~~--------gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~~------~~~-Gf~   65 (81)
T PRK10329          3 ITIYTRNDCVQCHATKRAMESR--------GFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GDL------SWS-GFR   65 (81)
T ss_pred             EEEEeCCCCHhHHHHHHHHHHC--------CCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CCE------EEe-cCC
Confidence            6789999999999988877653        58888889887654     2346678999965  332      223 588


Q ss_pred             HHHHHHHHHhcCC
Q 013976          376 VVALYKFLKKNAS  388 (432)
Q Consensus       376 ~~~l~~fi~~~~~  388 (432)
                      .+.|.+.+..+..
T Consensus        66 ~~~l~~~~~~~~~   78 (81)
T PRK10329         66 PDMINRLHPAPHA   78 (81)
T ss_pred             HHHHHHHHHhhhh
Confidence            8899888877654

>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx)

Probab=96.61  E-value=0.005  Score=50.28  Aligned_cols=43  Identities=16%  Similarity=0.302  Sum_probs=36.2

Q ss_pred             CCCcEEEEEeCCC-ChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCC
Q 013976          296 ESKDVLLEIYAPW-CGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT  341 (432)
Q Consensus       296 ~~~~~lv~f~~~~-c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~  341 (432)
                      .++.++|+||+.| |.+|....+.+.++...++   ++.++.|+.+.
T Consensus        25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~---~~~vi~Is~d~   68 (143)
T cd03014          25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD---NTVVLTISADL   68 (143)
T ss_pred             CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC---CCEEEEEECCC
Confidence            3578999999988 6899999999999999874   47888888764

Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based

>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE

Probab=96.55  E-value=0.005  Score=50.62  Aligned_cols=43  Identities=9%  Similarity=0.125  Sum_probs=35.3

Q ss_pred             CcEEEEEe-CCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCC
Q 013976          298 KDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT  341 (432)
Q Consensus       298 ~~~lv~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~  341 (432)
                      +.++|.|| ++||..|....+.+.++...+++. ++.++.|+.+.
T Consensus        29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~-~v~vi~vs~d~   72 (149)
T cd03018          29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAA-GAEVLGISVDS   72 (149)
T ss_pred             CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhC-CCEEEEecCCC
Confidence            67777776 899999999999999999999753 67787777654

AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=96.50  E-value=0.025  Score=47.67  Aligned_cols=90  Identities=10%  Similarity=0.103  Sum_probs=63.0

Q ss_pred             eEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCC-cc----c---ccchhhhhCCCCCCCcEEEEEeCCCCcee-
Q 013976          172 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDN-ED----V---GKPVSEYFGITGEAPKVLAYTGNDDAKKH-  241 (432)
Q Consensus       172 ~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~-~~----~---~~~l~~~~~i~~~~~P~i~i~~~~~~~~y-  241 (432)
                      ++.||+.| +.|++..+.+++++++|.-.+..+.+|... ..    .   ...+...||+.....|+.++++.++...+ 
T Consensus        73 lV~FwaswCp~C~~e~P~L~~l~~~~g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~~  152 (181)
T PRK13728         73 VVLFMQGHCPYCHQFDPVLKQLAQQYGFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEALP  152 (181)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHHHHcCCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEEE
Confidence            77799999 999999999999999986444444444321 00    0   11244577752223599988887765544 


Q ss_pred             cCCCCCCHHHHHHHHHHHhc
Q 013976          242 ILDGELTLDKIKTFGEDFLE  261 (432)
Q Consensus       242 ~~~~~~~~~~i~~fi~~~~~  261 (432)
                      ...|.++.+.+.+-++..++
T Consensus       153 ~~~G~~~~~~L~~~I~~ll~  172 (181)
T PRK13728        153 LLQGATDAAGFMARMDTVLQ  172 (181)
T ss_pred             EEECCCCHHHHHHHHHHHHh
Confidence            47899999999998888775

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=96.47  E-value=0.016  Score=42.85  Aligned_cols=73  Identities=12%  Similarity=0.036  Sum_probs=53.6

Q ss_pred             Ccce-EEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCceecCCCC
Q 013976          169 IKNQ-LLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGE  246 (432)
Q Consensus       169 ~~~~-i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~  246 (432)
                      .++- .+|..+| +.|....+.+.+++..+. ++.+..+|.++   .+++...||+...  |++++ + +. .  .+.|.
T Consensus        12 ~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~-~i~~~~vd~~~---~~e~a~~~~V~~v--Pt~vi-d-G~-~--~~~G~   80 (89)
T cd03026          12 GPINFETYVSLSCHNCPDVVQALNLMAVLNP-NIEHEMIDGAL---FQDEVEERGIMSV--PAIFL-N-GE-L--FGFGR   80 (89)
T ss_pred             CCEEEEEEECCCCCCcHHHHHHHHHHHHHCC-CceEEEEEhHh---CHHHHHHcCCccC--CEEEE-C-CE-E--EEeCC
Confidence            3544 4455677 999999999999998875 49999999887   4578999999987  99965 2 21 2  23465


Q ss_pred             CCHHHH
Q 013976          247 LTLDKI  252 (432)
Q Consensus       247 ~~~~~i  252 (432)
                      .+.+.+
T Consensus        81 ~~~~e~   86 (89)
T cd03026          81 MTLEEI   86 (89)
T ss_pred             CCHHHH
Confidence            555544

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.44  E-value=0.049  Score=49.01  Aligned_cols=119  Identities=16%  Similarity=0.218  Sum_probs=85.0

Q ss_pred             HHHHHHHHHhcCCCceeecCCCchhhhccCCCcc--eEEEEEeC-c-----chhhhHHHHHHHHHhcc------C--ceE
Q 013976          138 KSTIADFVFSNKLPLVTIFTRENAPSVFESPIKN--QLLLFAVS-N-----DSEKLLPVFEEAAKSFK------G--KLI  201 (432)
Q Consensus       138 ~~~l~~fi~~~~~p~v~~l~~~~~~~~~~~~~~~--~i~~~~~~-~-----~~~~~~~~~~~~a~~~~------~--~i~  201 (432)
                      .+.+.+-+.-.+...|..++.+.+..+...+...  +|++|... .     -|.....++.-+|..++      +  ++-
T Consensus        27 s~kv~~L~~~ts~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklF  106 (331)
T KOG2603|consen   27 SNKVVQLMSWTSESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLF  106 (331)
T ss_pred             HHHHHHHHhccCCCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEE
Confidence            3455555554566778999999999987754333  34444322 2     27778888999999886      2  689


Q ss_pred             EEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCcee---cCC---CCCCHHHHHHHHHHHhc
Q 013976          202 FVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKH---ILD---GELTLDKIKTFGEDFLE  261 (432)
Q Consensus       202 f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y---~~~---~~~~~~~i~~fi~~~~~  261 (432)
                      |+.||.++   .+.+.+.++++..  |+++++.+..+.+-   .|+   -....|++.+|+++...
T Consensus       107 F~~Vd~~e---~p~~Fq~l~ln~~--P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tk  167 (331)
T KOG2603|consen  107 FCMVDYDE---SPQVFQQLNLNNV--PHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTK  167 (331)
T ss_pred             EEEEeccc---cHHHHHHhcccCC--CeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhh
Confidence            99999998   6789999999988  99999966553321   222   23568999999999754

>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional

Probab=96.40  E-value=0.008  Score=50.52  Aligned_cols=42  Identities=21%  Similarity=0.362  Sum_probs=35.4

Q ss_pred             CCcEEEEEeCCC-ChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCC
Q 013976          297 SKDVLLEIYAPW-CGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT  341 (432)
Q Consensus       297 ~~~~lv~f~~~~-c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~  341 (432)
                      ++.++|.||+.| |..|....+.|.+++..+.   ++.++.|+++.
T Consensus        44 Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~---~~~vv~vs~D~   86 (167)
T PRK00522         44 GKRKVLNIFPSIDTGVCATSVRKFNQEAAELD---NTVVLCISADL   86 (167)
T ss_pred             CCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC---CcEEEEEeCCC
Confidence            578999999999 9999999999999998884   47777777654

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=96.40  E-value=0.011  Score=47.47  Aligned_cols=69  Identities=17%  Similarity=0.211  Sum_probs=49.9

Q ss_pred             CCCcceEEEEEeC-cchhhhHHHHHHHHHhccC---ceEEEEEecCCcc---------------------cccchhhhhC
Q 013976          167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG---KLIFVYVQMDNED---------------------VGKPVSEYFG  221 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~---~i~f~~vd~~~~~---------------------~~~~l~~~~~  221 (432)
                      .++.++|.||++| +.|+...+.+.+++.++.+   .+.++.+..+...                     ....+++.||
T Consensus        17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (131)
T cd03009          17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK   96 (131)
T ss_pred             CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence            3556788889999 9999999999999998864   3555555554321                     0135667889


Q ss_pred             CCCCCCcEEEEEeCCC
Q 013976          222 ITGEAPKVLAYTGNDD  237 (432)
Q Consensus       222 i~~~~~P~i~i~~~~~  237 (432)
                      +...  |++++++.++
T Consensus        97 v~~~--P~~~lid~~G  110 (131)
T cd03009          97 IEGI--PTLIILDADG  110 (131)
T ss_pred             CCCC--CEEEEECCCC
Confidence            9877  9999987554

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>TIGR02190 GlrX-dom Glutaredoxin-family domain

Probab=96.36  E-value=0.0071  Score=43.70  Aligned_cols=56  Identities=11%  Similarity=0.266  Sum_probs=40.1

Q ss_pred             CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc-----ccCCCCCCceEEEEeCCC
Q 013976          297 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----HRAKSDGFPTILFFPAGN  362 (432)
Q Consensus       297 ~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-----~~~~i~~~P~i~~~~~g~  362 (432)
                      +..-+++|+.+||++|......|.+.        ++.+..+|++.+..     ...+..++|.+.+  +|.
T Consensus         6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~--------gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i--~g~   66 (79)
T TIGR02190         6 KPESVVVFTKPGCPFCAKAKATLKEK--------GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI--GGK   66 (79)
T ss_pred             CCCCEEEEECCCCHhHHHHHHHHHHc--------CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE--CCE
Confidence            34557889999999999998888653        46666778776543     1246789999853  554

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=96.35  E-value=0.018  Score=62.71  Aligned_cols=93  Identities=19%  Similarity=0.169  Sum_probs=70.3

Q ss_pred             CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCc-eEEEEEecC---Cc---------------------ccccchhhhh
Q 013976          167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMD---NE---------------------DVGKPVSEYF  220 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~-i~f~~vd~~---~~---------------------~~~~~l~~~~  220 (432)
                      .++.++|.||+.| +.|+...+.+++++++|+++ +.++.|.+.   ..                     +....+.+.|
T Consensus       419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~  498 (1057)
T PLN02919        419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL  498 (1057)
T ss_pred             CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence            4567788899999 99999999999999999875 666655321   10                     0023456778


Q ss_pred             CCCCCCCcEEEEEeCCCCceecCCCCCCHHHHHHHHHHHhc
Q 013976          221 GITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  261 (432)
Q Consensus       221 ~i~~~~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  261 (432)
                      ++...  |++++++.+......+.|....+.+.++++..+.
T Consensus       499 ~V~~i--Pt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l~  537 (1057)
T PLN02919        499 GVSSW--PTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAALQ  537 (1057)
T ss_pred             CCCcc--ceEEEECCCCeEEEEEecccCHHHHHHHHHHHHH
Confidence            88776  9999997666555667888899999999988754

>PHA02125 thioredoxin-like protein

Probab=96.33  E-value=0.0085  Score=42.76  Aligned_cols=49  Identities=18%  Similarity=0.228  Sum_probs=40.2

Q ss_pred             eEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEE
Q 013976          172 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLA  231 (432)
Q Consensus       172 ~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~  231 (432)
                      +++|+++| ++|+.+.+.+.+++      +.++.+|.+.   ...+++.|++.+.  |+++
T Consensus         2 iv~f~a~wC~~Ck~~~~~l~~~~------~~~~~vd~~~---~~~l~~~~~v~~~--PT~~   51 (75)
T PHA02125          2 IYLFGAEWCANCKMVKPMLANVE------YTYVDVDTDE---GVELTAKHHIRSL--PTLV   51 (75)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHh------heEEeeeCCC---CHHHHHHcCCcee--CeEE
Confidence            57899999 99999999987764      3467777766   5688999999988  9986

>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=96.31  E-value=0.0086  Score=41.93  Aligned_cols=52  Identities=15%  Similarity=0.247  Sum_probs=37.9

Q ss_pred             EEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--c----cCCCCCCceEEEEeCCC
Q 013976          301 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--H----RAKSDGFPTILFFPAGN  362 (432)
Q Consensus       301 lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~----~~~i~~~P~i~~~~~g~  362 (432)
                      ++.|+++||++|..++..|.+.        ++.+..+|+..+..  .    ..+..++|+++  .+|.
T Consensus         2 v~ly~~~~Cp~C~~~~~~L~~~--------~i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~--~~~~   59 (72)
T cd02066           2 VVVFSKSTCPYCKRAKRLLESL--------GIEFEEIDILEDGELREELKELSGWPTVPQIF--INGE   59 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHHc--------CCcEEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCE
Confidence            5789999999999999888877        36677788877663  2    23556788764  3554

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which

>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin

Probab=96.30  E-value=0.025  Score=51.00  Aligned_cols=103  Identities=17%  Similarity=0.165  Sum_probs=65.3

Q ss_pred             CCceeecCC-CchhhhccCC---CcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCC
Q 013976          150 LPLVTIFTR-ENAPSVFESP---IKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITG  224 (432)
Q Consensus       150 ~p~v~~l~~-~~~~~~~~~~---~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~  224 (432)
                      ...|.+++. +.+...+...   ..++|.||.+. +.|..+...|..+|.+|.. +.|+.+.+...    .++..|....
T Consensus       124 fG~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~-vKFvkI~a~~~----~~~~~f~~~~  198 (265)
T PF02114_consen  124 FGEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE-VKFVKIRASKC----PASENFPDKN  198 (265)
T ss_dssp             --SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT-SEEEEEEECGC----CTTTTS-TTC
T ss_pred             CceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc-eEEEEEehhcc----CcccCCcccC
Confidence            456677754 5555544332   23455677777 8999999999999999999 99999988652    2567777766


Q ss_pred             CCCcEEEEEeCCCC--ceec---C-CCCCCHHHHHHHHHHH
Q 013976          225 EAPKVLAYTGNDDA--KKHI---L-DGELTLDKIKTFGEDF  259 (432)
Q Consensus       225 ~~~P~i~i~~~~~~--~~y~---~-~~~~~~~~i~~fi~~~  259 (432)
                      .  |+|+++.++..  ....   + ..+++.+.|..|+..+
T Consensus       199 L--PtllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~  237 (265)
T PF02114_consen  199 L--PTLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEY  237 (265)
T ss_dssp             ---SEEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred             C--CEEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence            5  99999986652  1111   2 2368889999999884

Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.

>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides

Probab=96.29  E-value=0.0078  Score=50.95  Aligned_cols=86  Identities=12%  Similarity=0.084  Sum_probs=58.9

Q ss_pred             CCcEEEEEe-CCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc------------------------------c
Q 013976          297 SKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------------------------------H  345 (432)
Q Consensus       297 ~~~~lv~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~------------------------------~  345 (432)
                      ++.++|+|| +.||..|....+.+.+++..|.+. ++.++.|.++....                              .
T Consensus        29 Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~-~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~  107 (173)
T cd03015          29 GKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKL-NAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISR  107 (173)
T ss_pred             CCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHH
Confidence            578999999 899999999999999999999763 56666666543210                              1


Q ss_pred             cCCCC------CCceEEEEe-CCCcccCceecc----CCCCHHHHHHHHHhc
Q 013976          346 RAKSD------GFPTILFFP-AGNKSFDPINVD----VDRTVVALYKFLKKN  386 (432)
Q Consensus       346 ~~~i~------~~P~i~~~~-~g~~~~~~~~y~----g~~~~~~l~~fi~~~  386 (432)
                      .|++.      ..|+.+++. +|....   .+.    ...+.+.|++.|+..
T Consensus       108 ~~gv~~~~~~~~~p~~~lID~~G~I~~---~~~~~~~~~~~~~~il~~l~~~  156 (173)
T cd03015         108 DYGVLDEEEGVALRGTFIIDPEGIIRH---ITVNDLPVGRSVDETLRVLDAL  156 (173)
T ss_pred             HhCCccccCCceeeEEEEECCCCeEEE---EEecCCCCCCCHHHHHHHHHHh
Confidence            23443      467888884 554332   221    135678888888764

The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric

>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified

Probab=96.27  E-value=0.0087  Score=48.52  Aligned_cols=45  Identities=16%  Similarity=0.185  Sum_probs=37.6

Q ss_pred             CCCcEEEEEe-CCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCC
Q 013976          296 ESKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT  341 (432)
Q Consensus       296 ~~~~~lv~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~  341 (432)
                      .+++++|+|| +.||..|....+.+.++..+++.. ++.|+.|..+.
T Consensus        21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~-~~~~i~is~d~   66 (140)
T cd02971          21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKG-GAEVLGVSVDS   66 (140)
T ss_pred             CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEeCCC
Confidence            4688899998 789999999999999999999643 68888887654

PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a

>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=96.26  E-value=0.012  Score=42.66  Aligned_cols=54  Identities=13%  Similarity=0.354  Sum_probs=38.0

Q ss_pred             EEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc-------ccCCCCCCceEEEEeCCC
Q 013976          301 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-------HRAKSDGFPTILFFPAGN  362 (432)
Q Consensus       301 lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-------~~~~i~~~P~i~~~~~g~  362 (432)
                      +++|+++||+.|..+...+.++..      .+.+..++...+..       ...+..++|.+  |-+|.
T Consensus         2 v~~y~~~~Cp~C~~~~~~l~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v--~~~g~   62 (82)
T cd03419           2 VVVFSKSYCPYCKRAKSLLKELGV------KPAVVELDQHEDGSEIQDYLQELTGQRTVPNV--FIGGK   62 (82)
T ss_pred             EEEEEcCCCHHHHHHHHHHHHcCC------CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeE--EECCE
Confidence            578999999999999998888743      35566666654421       22467788986  44554

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes

>PF13728 TraF: F plasmid transfer operon protein

Probab=96.26  E-value=0.024  Score=49.61  Aligned_cols=81  Identities=12%  Similarity=0.183  Sum_probs=61.5

Q ss_pred             eEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCc------ccccchhhhhCCCCCCCcEEEEEeCCCCceecC-
Q 013976          172 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNE------DVGKPVSEYFGITGEAPKVLAYTGNDDAKKHIL-  243 (432)
Q Consensus       172 ~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~------~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~-  243 (432)
                      +++||... +.|+.+.+.++.++.+|.=.+..+.+|+...      .....+.+.+|+...  |++++++.+++..+.. 
T Consensus       124 L~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~--Pal~Lv~~~~~~~~pv~  201 (215)
T PF13728_consen  124 LFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVT--PALFLVNPNTKKWYPVS  201 (215)
T ss_pred             EEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcC--CEEEEEECCCCeEEEEe
Confidence            55666666 8899999999999999977788888875410      013467888999866  9999998887666665 


Q ss_pred             CCCCCHHHHHH
Q 013976          244 DGELTLDKIKT  254 (432)
Q Consensus       244 ~~~~~~~~i~~  254 (432)
                      .|-++.+.|.+
T Consensus       202 ~G~~s~~~L~~  212 (215)
T PF13728_consen  202 QGFMSLDELED  212 (215)
T ss_pred             eecCCHHHHHH
Confidence            57788877754

>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=96.24  E-value=0.0089  Score=43.41  Aligned_cols=79  Identities=11%  Similarity=0.122  Sum_probs=54.2

Q ss_pred             EEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCcccCceeccCCCCHH
Q 013976          300 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVV  377 (432)
Q Consensus       300 ~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~~~g~~~~~~~~y~g~~~~~  377 (432)
                      .|++|..++|.-|..+..++..++..    ..+.+-.+|++.++.  .+|+. .+|.+.+=..+... ......+..+.+
T Consensus         1 ~l~l~~k~~C~LC~~a~~~L~~~~~~----~~~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~-~~~~~~~~~d~~   74 (81)
T PF05768_consen    1 TLTLYTKPGCHLCDEAKEILEEVAAE----FPFELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFK-EQEELKWRFDEE   74 (81)
T ss_dssp             -EEEEE-SSSHHHHHHHHHHHHCCTT----STCEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGC-TSEEEESSB-HH
T ss_pred             CEEEEcCCCCChHHHHHHHHHHHHhh----cCceEEEEECCCCHHHHHHhcC-CCCEEEEcCccccc-ccceeCCCCCHH
Confidence            37889999999999988777765322    258899999997776  67774 79986554322211 123566789999


Q ss_pred             HHHHHHH
Q 013976          378 ALYKFLK  384 (432)
Q Consensus       378 ~l~~fi~  384 (432)
                      .|.+||+
T Consensus        75 ~L~~~L~   81 (81)
T PF05768_consen   75 QLRAWLE   81 (81)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhC
Confidence            9999985

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.

>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH

Probab=96.22  E-value=0.0082  Score=42.45  Aligned_cols=65  Identities=11%  Similarity=0.096  Sum_probs=44.7

Q ss_pred             EEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--c---cCCCCCCceEEEEeCCCcccCceeccCCCC
Q 013976          301 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--H---RAKSDGFPTILFFPAGNKSFDPINVDVDRT  375 (432)
Q Consensus       301 lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~---~~~i~~~P~i~~~~~g~~~~~~~~y~g~~~  375 (432)
                      +.+|..++|+.|...+..|.+.        ++.+..+|++.+..  .   ..+..++|.+++  +|..      +-|+.+
T Consensus         1 v~ly~~~~Cp~C~~ak~~L~~~--------~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~~------~~~G~~   64 (72)
T TIGR02194         1 ITVYSKNNCVQCKMTKKALEEH--------GIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGDL------SWSGFR   64 (72)
T ss_pred             CEEEeCCCCHHHHHHHHHHHHC--------CCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCCc------EEeccC
Confidence            3578899999999998888753        57788888887664  2   346778999755  3432      233466


Q ss_pred             HHHHHH
Q 013976          376 VVALYK  381 (432)
Q Consensus       376 ~~~l~~  381 (432)
                      .+.|.+
T Consensus        65 ~~~~~~   70 (72)
T TIGR02194        65 PDKLKA   70 (72)
T ss_pred             HHHHHh
Confidence            665544

NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.

>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]

Probab=96.13  E-value=0.023  Score=47.98  Aligned_cols=108  Identities=21%  Similarity=0.298  Sum_probs=84.4

Q ss_pred             CceEEEe-cccchhhhhcC--CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc-ccCCCCCCce
Q 013976          279 GDVKIVV-GNNFDEIVLDE--SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-HRAKSDGFPT  354 (432)
Q Consensus       279 ~~v~~l~-~~~~~~~~~~~--~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-~~~~i~~~P~  354 (432)
                      +.|..++ +..|-+.+...  ....+|..|-+.-..|..+...+.=||..|..   ++|.++-.+.-.. .+|....+|+
T Consensus       138 ~~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~---vKFckikss~~gas~~F~~n~lP~  214 (273)
T KOG3171|consen  138 GFVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPI---VKFCKIKSSNTGASDRFSLNVLPT  214 (273)
T ss_pred             ceEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCc---eeEEEeeeccccchhhhcccCCce
Confidence            4566665 58888877433  23567888999999999999999999998875   9999998666555 7899999999


Q ss_pred             EEEEeCCCcccCceecc----CCCCHHHHHHHHHhcCCC
Q 013976          355 ILFFPAGNKSFDPINVD----VDRTVVALYKFLKKNASI  389 (432)
Q Consensus       355 i~~~~~g~~~~~~~~y~----g~~~~~~l~~fi~~~~~~  389 (432)
                      +++|++|..+.+.+...    .......+.+||+.+.-.
T Consensus       215 LliYkgGeLIgNFv~va~qlgedffa~dle~FL~e~gll  253 (273)
T KOG3171|consen  215 LLIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEYGLL  253 (273)
T ss_pred             EEEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHcCCC
Confidence            99999998775444433    256778899999987643

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=96.11  E-value=0.027  Score=45.24  Aligned_cols=69  Identities=17%  Similarity=0.205  Sum_probs=49.2

Q ss_pred             CCCcceEEEEEeC-cchhhhHHHHHHHHHhccC---ceEEEEEecCCcc----------------------cccchhhhh
Q 013976          167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG---KLIFVYVQMDNED----------------------VGKPVSEYF  220 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~---~i~f~~vd~~~~~----------------------~~~~l~~~~  220 (432)
                      .++..++.|+++| +.|+...+.+.++++++++   .+.++.++.+...                      ....+.+.|
T Consensus        16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~   95 (132)
T cd02964          16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF   95 (132)
T ss_pred             CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence            3556778889999 9999999999999998875   3666666555421                      011344568


Q ss_pred             CCCCCCCcEEEEEeCCC
Q 013976          221 GITGEAPKVLAYTGNDD  237 (432)
Q Consensus       221 ~i~~~~~P~i~i~~~~~  237 (432)
                      ++...  |++++++.++
T Consensus        96 ~v~~i--Pt~~lid~~G  110 (132)
T cd02964          96 KVEGI--PTLVVLKPDG  110 (132)
T ss_pred             CCCCC--CEEEEECCCC
Confidence            88777  9998886543

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>TIGR03137 AhpC peroxiredoxin

Probab=96.09  E-value=0.011  Score=50.74  Aligned_cols=87  Identities=13%  Similarity=0.116  Sum_probs=57.8

Q ss_pred             CCcEEEEEe-CCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCcc--------------c-------------ccCC
Q 013976          297 SKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--------------H-------------HRAK  348 (432)
Q Consensus       297 ~~~~lv~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~--------------~-------------~~~~  348 (432)
                      ++.+||+|| +.||..|....+.|.++...+... ++.++-|.++...              .             ..|+
T Consensus        31 Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~-gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~g  109 (187)
T TIGR03137        31 GKWSVFFFYPADFTFVCPTELEDLADKYAELKKL-GVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFG  109 (187)
T ss_pred             CCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhc-CCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhC
Confidence            578999999 999999999999999999998753 4555555544210              0             1345


Q ss_pred             CC------CCceEEEE-eCCCcccCceecc-C--CCCHHHHHHHHHhc
Q 013976          349 SD------GFPTILFF-PAGNKSFDPINVD-V--DRTVVALYKFLKKN  386 (432)
Q Consensus       349 i~------~~P~i~~~-~~g~~~~~~~~y~-g--~~~~~~l~~fi~~~  386 (432)
                      +.      ..|+.+++ ++|...  .+... .  .++.+.|++.|...
T Consensus       110 v~~~~~g~~~p~tfiID~~G~I~--~~~~~~~~~~~~~~~ll~~l~~~  155 (187)
T TIGR03137       110 VLIEEAGLADRGTFVIDPEGVIQ--AVEITDNGIGRDASELLRKIKAA  155 (187)
T ss_pred             CcccCCCceeeEEEEECCCCEEE--EEEEeCCCCCCCHHHHHHHHHHh
Confidence            54      35888888 455443  22111 1  45888888887543

This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.

>KOG3414 consensus Component of the U4/U6

Probab=96.09  E-value=0.031  Score=42.93  Aligned_cols=99  Identities=15%  Similarity=0.210  Sum_probs=71.3

Q ss_pred             ccchhhhhc-CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCc
Q 013976          287 NNFDEIVLD-ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNK  363 (432)
Q Consensus       287 ~~~~~~~~~-~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~~~g~~  363 (432)
                      ...++.+.. ..+.+++-|-..|.+.|..+-..+.+++...++  -..++-+|+++-..  +-+.+...|++.+|-+++.
T Consensus        12 ~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsn--fa~IylvdideV~~~~~~~~l~~p~tvmfFfn~kH   89 (142)
T KOG3414|consen   12 WEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSN--FAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNNKH   89 (142)
T ss_pred             HHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhh--ceEEEEEecchhhhhhhhhcccCCceEEEEEcCce
Confidence            444555533 347889999999999999999999999999998  57888888886665  6789999999999976654


Q ss_pred             cc------CceeccC-CCCHHHHHHHHHhcC
Q 013976          364 SF------DPINVDV-DRTVVALYKFLKKNA  387 (432)
Q Consensus       364 ~~------~~~~y~g-~~~~~~l~~fi~~~~  387 (432)
                      ..      .--.+.+ -.+.+.+++.++-.-
T Consensus        90 mkiD~gtgdn~Kin~~~~~kq~~Idiie~iy  120 (142)
T KOG3414|consen   90 MKIDLGTGDNNKINFAFEDKQEFIDIIETIY  120 (142)
T ss_pred             EEEeeCCCCCceEEEEeccHHHHHHHHHHHH
Confidence            21      0001222 245677777666543

U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions

Probab=96.05  E-value=0.012  Score=41.62  Aligned_cols=47  Identities=15%  Similarity=0.155  Sum_probs=35.8

Q ss_pred             EEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--c----cCCCCCCceE
Q 013976          301 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--H----RAKSDGFPTI  355 (432)
Q Consensus       301 lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~----~~~i~~~P~i  355 (432)
                      +++|+.+||+.|+.+...|++.        ++.+..+|+..++.  +    ..+-..+|.+
T Consensus         3 v~ly~~~~C~~C~ka~~~L~~~--------gi~~~~~di~~~~~~~~el~~~~g~~~vP~v   55 (73)
T cd03027           3 VTIYSRLGCEDCTAVRLFLREK--------GLPYVEINIDIFPERKAELEERTGSSVVPQI   55 (73)
T ss_pred             EEEEecCCChhHHHHHHHHHHC--------CCceEEEECCCCHHHHHHHHHHhCCCCcCEE
Confidence            6789999999999998888864        57777888887664  1    2355678887

GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.

>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=96.02  E-value=0.013  Score=41.72  Aligned_cols=52  Identities=15%  Similarity=0.224  Sum_probs=37.0

Q ss_pred             EEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--cc----CCCC-CCceEEEEeCCC
Q 013976          301 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HR----AKSD-GFPTILFFPAGN  362 (432)
Q Consensus       301 lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~----~~i~-~~P~i~~~~~g~  362 (432)
                      +++|..+||+.|..+...|.+.        ++.+..+|++.+..  +.    .+.. ++|.+  |-+|+
T Consensus         2 i~ly~~~~Cp~C~~ak~~L~~~--------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v--~i~g~   60 (75)
T cd03418           2 VEIYTKPNCPYCVRAKALLDKK--------GVDYEEIDVDGDPALREEMINRSGGRRTVPQI--FIGDV   60 (75)
T ss_pred             EEEEeCCCChHHHHHHHHHHHC--------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEE--EECCE
Confidence            5789999999999988888764        46777788877643  22    3444 88976  44553

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i

>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long

Probab=96.02  E-value=0.011  Score=45.00  Aligned_cols=83  Identities=16%  Similarity=0.170  Sum_probs=57.1

Q ss_pred             CceEEEecccchhhhhcCCCcEEEEEeCCC--ChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCce
Q 013976          279 GDVKIVVGNNFDEIVLDESKDVLLEIYAPW--CGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPT  354 (432)
Q Consensus       279 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~--c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~  354 (432)
                      .....++..+++.++ ......+++|....  |..|....-++-+|.+.+.+  .+..+.+.......  .+|++..+|+
T Consensus         9 ~g~~~vd~~~ld~~l-~~~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~--~~~~avv~~~~e~~L~~r~gv~~~Pa   85 (107)
T PF07449_consen    9 HGWPRVDADTLDAFL-AAPGDAVLFFAGDPARFPETADVAVILPELVKAFPG--RFRGAVVARAAERALAARFGVRRWPA   85 (107)
T ss_dssp             -TEEEE-CCCHHHHH-HCCSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTT--SEEEEEEEHHHHHHHHHHHT-TSSSE
T ss_pred             cCCeeechhhHHHHH-hCCCcEEEEECCCCCcCcccccceeEcHHHHHhhhC--ccceEEECchhHHHHHHHhCCccCCe
Confidence            346788999999987 44555555555432  45556666688899888988  57777777222222  6899999999


Q ss_pred             EEEEeCCCcc
Q 013976          355 ILFFPAGNKS  364 (432)
Q Consensus       355 i~~~~~g~~~  364 (432)
                      ++++++|..+
T Consensus        86 Lvf~R~g~~l   95 (107)
T PF07449_consen   86 LVFFRDGRYL   95 (107)
T ss_dssp             EEEEETTEEE
T ss_pred             EEEEECCEEE
Confidence            9999999765

This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.

>TIGR02181 GRX_bact Glutaredoxin, GrxC family

Probab=96.00  E-value=0.0089  Score=43.12  Aligned_cols=52  Identities=13%  Similarity=0.289  Sum_probs=36.6

Q ss_pred             EEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--c----cCCCCCCceEEEEeCCC
Q 013976          301 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--H----RAKSDGFPTILFFPAGN  362 (432)
Q Consensus       301 lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~----~~~i~~~P~i~~~~~g~  362 (432)
                      +++|+.+||+.|......|.+.        ++.+..+|++.+..  +    ..+..++|++  |-+|+
T Consensus         1 v~ly~~~~Cp~C~~a~~~L~~~--------~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i--~i~g~   58 (79)
T TIGR02181         1 VTIYTKPYCPYCTRAKALLSSK--------GVTFTEIRVDGDPALRDEMMQRSGRRTVPQI--FIGDV   58 (79)
T ss_pred             CEEEecCCChhHHHHHHHHHHc--------CCCcEEEEecCCHHHHHHHHHHhCCCCcCEE--EECCE
Confidence            4678999999999999888764        45666667766543  2    2356789997  44453

This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.

>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF

Probab=95.98  E-value=0.058  Score=48.23  Aligned_cols=88  Identities=18%  Similarity=0.151  Sum_probs=67.5

Q ss_pred             eEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcc------cccchhhhhCCCCCCCcEEEEEeCCCCceecC-
Q 013976          172 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED------VGKPVSEYFGITGEAPKVLAYTGNDDAKKHIL-  243 (432)
Q Consensus       172 ~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~------~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~-  243 (432)
                      +++||... +.|+++.+.++.++.+|.=.+..+.+|+....      ....+++.+|+...  |++++++.+.+..++. 
T Consensus       154 L~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~--Pal~Lv~~~t~~~~pv~  231 (256)
T TIGR02739       154 LFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYF--PALYLVNPKSQKMSPLA  231 (256)
T ss_pred             EEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCccC--ceEEEEECCCCcEEEEe
Confidence            55666665 88999999999999999988888888887421      11346778899776  9999998887776665 


Q ss_pred             CCCCCHHHHHHHHHHHhc
Q 013976          244 DGELTLDKIKTFGEDFLE  261 (432)
Q Consensus       244 ~~~~~~~~i~~fi~~~~~  261 (432)
                      .|-++.++|.+=+.....
T Consensus       232 ~G~iS~deL~~Ri~~v~~  249 (256)
T TIGR02739       232 YGFISQDELKERILNVLT  249 (256)
T ss_pred             eccCCHHHHHHHHHHHHh
Confidence            578899888766665544

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.

>cd03071 PDI_b'_NRX PDIb' family, NRX subgroup, redox inactive TRX-like domain b'; composed of vertebrate nucleoredoxins (NRX)

Probab=95.93  E-value=0.069  Score=39.80  Aligned_cols=86  Identities=22%  Similarity=0.327  Sum_probs=55.8

Q ss_pred             eEEEEEeC---cchhhhHHHHHHHHHhcc------C--ceEEEEEecCCcccccchhhhh-CCCCCCCcEEEEEeCCCCc
Q 013976          172 QLLLFAVS---NDSEKLLPVFEEAAKSFK------G--KLIFVYVQMDNEDVGKPVSEYF-GITGEAPKVLAYTGNDDAK  239 (432)
Q Consensus       172 ~i~~~~~~---~~~~~~~~~~~~~a~~~~------~--~i~f~~vd~~~~~~~~~l~~~~-~i~~~~~P~i~i~~~~~~~  239 (432)
                      .+++|.+.   +..+..++.++.+|.++.      +  ......++.+.+  -.+.++.| ++. ..-|.+++.+-..+.
T Consensus        17 ~lvlf~D~Edeg~l~~A~~llQpiAd~~~aka~~k~~dap~~f~~a~ede--~tdsLRDf~nL~-d~~P~LviLDip~r~   93 (116)
T cd03071          17 CLVLFVDSEDEGESEAAKQLIQPIAEKIIAKYKAKEEEAPLLFFVAGEDD--MTDSLRDYTNLP-EAAPLLTILDMSARA   93 (116)
T ss_pred             eEEEEecccchhhHHHHHHHHHHHHHHHHHHhhccCCCcceeeeeeccch--HHHHHHHhcCCC-ccCceEEEEeccccc
Confidence            44455544   346777888888888753      1  122222233332  22344444 554 346999999888888


Q ss_pred             eecCC-CCCCHHHHHHHHHHHh
Q 013976          240 KHILD-GELTLDKIKTFGEDFL  260 (432)
Q Consensus       240 ~y~~~-~~~~~~~i~~fi~~~~  260 (432)
                      +|.+. .++|.+++.+|+.+|+
T Consensus        94 ~~v~~~eeIT~e~~~~fv~~yl  115 (116)
T cd03071          94 KYVMDVEEITPAIVEAFVSDFL  115 (116)
T ss_pred             eEeCchHhcCHHHHHHHHHHhh
Confidence            88885 4799999999999986

NRX is a 400-amino acid nuclear protein with one redox active TRX domain followed by one redox inactive TRX-like domain homologous to the b' domain of PDI. In vitro studies show that NRX has thiol oxidoreductase activity and that it may be involved in the redox regulation of transcription, in a manner different from that of TRX or glutaredoxin. NRX enhances the activation of NF-kB by TNFalpha, as well as PMA-1 induced AP-1 and FK-induced CREB activation. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. The mouse NRX gene is implicated in streptozotocin-induced diabetes. Similar to PDI, the b' domain of NRX is likely involved in substrate recognition.

>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria

Probab=95.89  E-value=0.019  Score=40.55  Aligned_cols=65  Identities=14%  Similarity=0.174  Sum_probs=44.4

Q ss_pred             EEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc-c----cCCCCCCceEEEEeCCCcccCceeccCCC
Q 013976          300 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-H----RAKSDGFPTILFFPAGNKSFDPINVDVDR  374 (432)
Q Consensus       300 ~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-~----~~~i~~~P~i~~~~~g~~~~~~~~y~g~~  374 (432)
                      -+++|..+||+.|...+..|.+.        ++.+..+|++.+.. .    ..+..++|.+  |-+|..+       |  
T Consensus         2 ~v~lys~~~Cp~C~~ak~~L~~~--------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~i--fi~g~~i-------g--   62 (72)
T cd03029           2 SVSLFTKPGCPFCARAKAALQEN--------GISYEEIPLGKDITGRSLRAVTGAMTVPQV--FIDGELI-------G--   62 (72)
T ss_pred             eEEEEECCCCHHHHHHHHHHHHc--------CCCcEEEECCCChhHHHHHHHhCCCCcCeE--EECCEEE-------e--
Confidence            36789999999999998777753        46677778776654 1    2367789987  4555432       2  


Q ss_pred             CHHHHHHHH
Q 013976          375 TVVALYKFL  383 (432)
Q Consensus       375 ~~~~l~~fi  383 (432)
                      ..+.|.+|+
T Consensus        63 g~~~l~~~l   71 (72)
T cd03029          63 GSDDLEKYF   71 (72)
T ss_pred             CHHHHHHHh
Confidence            356666664

PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.

>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins

Probab=95.80  E-value=0.025  Score=46.62  Aligned_cols=68  Identities=26%  Similarity=0.569  Sum_probs=44.1

Q ss_pred             hcCCCcEEEEEeCCCChhhhhhHH-HH--HHHHHHhcCCCCEEEEEEeCCCccc--ccC--------CCCCCceEEEE-e
Q 013976          294 LDESKDVLLEIYAPWCGHCQAFEP-TY--NKLAKHLRGVDSIVIAKMDGTTNEH--HRA--------KSDGFPTILFF-P  359 (432)
Q Consensus       294 ~~~~~~~lv~f~~~~c~~c~~~~~-~~--~~la~~~~~~~~~~~~~id~~~~~~--~~~--------~i~~~P~i~~~-~  359 (432)
                      ...+++++|.++++||.-|+.|.. .|  .++|..+..  ++.-+++|.++-++  ..|        +..++|+.++. +
T Consensus        34 k~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~--~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwPl~vfltP  111 (163)
T PF03190_consen   34 KKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNR--NFIPVKVDREERPDIDKIYMNAVQAMSGSGGWPLTVFLTP  111 (163)
T ss_dssp             HHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHH--H-EEEEEETTT-HHHHHHHHHHHHHHHS---SSEEEEE-T
T ss_pred             HhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhC--CEEEEEeccccCccHHHHHHHHHHHhcCCCCCCceEEECC
Confidence            456799999999999999998874 23  346677766  69999999988776  233        67899999999 5


Q ss_pred             CCCc
Q 013976          360 AGNK  363 (432)
Q Consensus       360 ~g~~  363 (432)
                      .|+.
T Consensus       112 dg~p  115 (163)
T PF03190_consen  112 DGKP  115 (163)
T ss_dssp             TS-E
T ss_pred             CCCe
Confidence            5543

; PDB: 3IRA_A.

>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds

Probab=95.79  E-value=0.05  Score=41.60  Aligned_cols=87  Identities=20%  Similarity=0.267  Sum_probs=55.9

Q ss_pred             chhhhccCCCcceEEEEEeCcchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCC---
Q 013976          160 NAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGND---  236 (432)
Q Consensus       160 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~---  236 (432)
                      .+..+.......+|-||....+  .....|.++|..+++...|+.....      .+...+++  .  |.++++.+.   
T Consensus        10 ~l~~f~~~~~~~Vvg~f~~~~~--~~~~~F~~vA~~~R~d~~F~~~~~~------~~~~~~~~--~--~~ivl~~p~~~~   77 (104)
T cd03069          10 EFEKFLSDDDASVVGFFEDEDS--KLLSEFLKAADTLRESFRFAHTSDK------QLLEKYGY--G--EGVVLFRPPRLS   77 (104)
T ss_pred             HHHHHhccCCcEEEEEEcCCCc--hHHHHHHHHHHhhhhcCEEEEEChH------HHHHhcCC--C--CceEEEechhhh
Confidence            3445455444444545544332  4556788999999988999776533      45677777  3  555555321   


Q ss_pred             ---CCceecCCCCCCHHHHHHHHHH
Q 013976          237 ---DAKKHILDGELTLDKIKTFGED  258 (432)
Q Consensus       237 ---~~~~y~~~~~~~~~~i~~fi~~  258 (432)
                         ......|.|.++.+.|.+||..
T Consensus        78 ~k~de~~~~y~g~~~~~~l~~fi~~  102 (104)
T cd03069          78 NKFEDSSVKFDGDLDSSKIKKFIRE  102 (104)
T ss_pred             cccCcccccccCcCCHHHHHHHHHh
Confidence               1233457898999999999986

It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.

>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source

Probab=95.79  E-value=0.022  Score=44.31  Aligned_cols=61  Identities=16%  Similarity=0.188  Sum_probs=43.5

Q ss_pred             CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEE-ecCCcccccchhhhhCCCCCCCcEE
Q 013976          167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYV-QMDNEDVGKPVSEYFGITGEAPKVL  230 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~v-d~~~~~~~~~l~~~~~i~~~~~P~i  230 (432)
                      .+++.++.||++| +.|+...+.++++++.+.+.+.++.+ |.+... ...+++.+++...  |.+
T Consensus        20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~-~~~~~~~~~~~~~--p~~   82 (114)
T cd02967          20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAE-HQRFLKKHGLEAF--PYV   82 (114)
T ss_pred             CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHH-HHHHHHHhCCCCC--cEE
Confidence            3567888899999 99999999999999998776655544 222222 4456777777554  654

mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.

>PRK13703 conjugal pilus assembly protein TraF; Provisional

Probab=95.77  E-value=0.082  Score=47.01  Aligned_cols=89  Identities=12%  Similarity=0.073  Sum_probs=67.6

Q ss_pred             eEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcc------cccchhhhhCCCCCCCcEEEEEeCCCCceecC-
Q 013976          172 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED------VGKPVSEYFGITGEAPKVLAYTGNDDAKKHIL-  243 (432)
Q Consensus       172 ~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~------~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~-  243 (432)
                      +++||... +.|+++.+.++.++++|.=.+..+.+|+....      ......+.+|+..+  |++++++.+.+..++. 
T Consensus       147 L~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~--PAl~Lv~~~t~~~~pv~  224 (248)
T PRK13703        147 LMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYF--PALMLVDPKSGSVRPLS  224 (248)
T ss_pred             EEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCccc--ceEEEEECCCCcEEEEe
Confidence            55566655 88999999999999999988999999985421      01234567888776  9999998887777665 


Q ss_pred             CCCCCHHHHHHHHHHHhcC
Q 013976          244 DGELTLDKIKTFGEDFLEG  262 (432)
Q Consensus       244 ~~~~~~~~i~~fi~~~~~g  262 (432)
                      .|-++.++|.+=+.....+
T Consensus       225 ~G~iS~deL~~Ri~~v~t~  243 (248)
T PRK13703        225 YGFITQDDLAKRFLNVSTD  243 (248)
T ss_pred             eccCCHHHHHHHHHHHHhc
Confidence            5788998887777666554

>TIGR02189 GlrX-like_plant Glutaredoxin-like family

Probab=95.76  E-value=0.021  Score=43.24  Aligned_cols=55  Identities=15%  Similarity=0.226  Sum_probs=37.5

Q ss_pred             cEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc-----cc----CCCCCCceEEEEeCCCc
Q 013976          299 DVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----HR----AKSDGFPTILFFPAGNK  363 (432)
Q Consensus       299 ~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-----~~----~~i~~~P~i~~~~~g~~  363 (432)
                      .-++.|..+||++|..+...|.++        ++.+..+|++..+.     ..    .+..++|.|  |-+|+.
T Consensus         8 ~~Vvvysk~~Cp~C~~ak~~L~~~--------~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~V--fi~g~~   71 (99)
T TIGR02189         8 KAVVIFSRSSCCMCHVVKRLLLTL--------GVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAV--FVGGKL   71 (99)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHc--------CCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeE--EECCEE
Confidence            347789999999999998877765        35555667665543     11    246789997  555643

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.

>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs

Probab=95.69  E-value=0.14  Score=43.18  Aligned_cols=98  Identities=12%  Similarity=0.100  Sum_probs=68.2

Q ss_pred             CCCcceEEEEEeC-cchhhhHHHHHHHHHhccC-ceEEEEEecCCc------c--------------------cccchhh
Q 013976          167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNE------D--------------------VGKPVSE  218 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~-~i~f~~vd~~~~------~--------------------~~~~l~~  218 (432)
                      .++.+++.|+..| +.|....+.+.++..++.+ ++.|+.+..+..      .                    ....+.+
T Consensus        24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~  103 (171)
T cd02969          24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK  103 (171)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence            4456677788888 8899999999999999974 588877766431      0                    0123456


Q ss_pred             hhCCCCCCCcEEEEEeCCCCceecC--C-------CCCCHHHHHHHHHHHhcCCcCc
Q 013976          219 YFGITGEAPKVLAYTGNDDAKKHIL--D-------GELTLDKIKTFGEDFLEGKLKP  266 (432)
Q Consensus       219 ~~~i~~~~~P~i~i~~~~~~~~y~~--~-------~~~~~~~i~~fi~~~~~g~l~~  266 (432)
                      .||+...  |.+++++.++...|..  .       +..+...+.+-|...++|.-.+
T Consensus       104 ~~~v~~~--P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~  158 (171)
T cd02969         104 AYGAACT--PDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKPVP  158 (171)
T ss_pred             HcCCCcC--CcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcCCCCC
Confidence            7777665  8888887665444331  1       2356788999999999876544

Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.

>PHA03050 glutaredoxin; Provisional

Probab=95.64  E-value=0.027  Score=43.33  Aligned_cols=52  Identities=13%  Similarity=0.080  Sum_probs=34.5

Q ss_pred             cEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc---------ccCCCCCCceE
Q 013976          299 DVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH---------HRAKSDGFPTI  355 (432)
Q Consensus       299 ~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~---------~~~~i~~~P~i  355 (432)
                      .-+++|..+||++|......|.++.-..     -.+..+|++....         ..-+..++|.|
T Consensus        13 ~~V~vys~~~CPyC~~ak~~L~~~~i~~-----~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~I   73 (108)
T PHA03050         13 NKVTIFVKFTCPFCRNALDILNKFSFKR-----GAYEIVDIKEFKPENELRDYFEQITGGRTVPRI   73 (108)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHcCCCc-----CCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEE
Confidence            3478899999999999988887762211     1455566665322         12366789998

>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol

Probab=95.64  E-value=0.048  Score=41.24  Aligned_cols=88  Identities=13%  Similarity=0.191  Sum_probs=49.0

Q ss_pred             eeeCCHHHHHHHhhc--CCeEEEEEecCCCcc---hHHHHHHHhccCC-CceEEEe-------CcHHHHhHcCCCCCCCC
Q 013976           49 YNITTLDEAERVLTS--ETKVVLGYLNSLVGS---ESEVLADASRLED-DVNFYQT-------TNPDVAKIFHLDSKVNR  115 (432)
Q Consensus        49 ~~i~~~~~l~~~~~~--~~~~vv~f~~~~~~~---~~~~f~~~a~~~~-~~~F~~~-------~~~~~~~~~~~~~~~~~  115 (432)
                      ..|++.++++++++.  .+.++|.=-+..|+-   .++.|........ .+.+++.       -+..++..+||..+  .
T Consensus         2 ~~L~t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~He--S   79 (105)
T PF11009_consen    2 KPLTTEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHE--S   79 (105)
T ss_dssp             -E--SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT------S
T ss_pred             CccCCHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcC--C
Confidence            368899999999986  555555434555653   4566666553333 3767662       26678999999873  6


Q ss_pred             CeEEEEecCCCceeccc--CCCCCHHHH
Q 013976          116 PALVMVKKETEKISYFA--DGKFDKSTI  141 (432)
Q Consensus       116 p~i~l~~~~~~~~~~y~--~g~~~~~~l  141 (432)
                      |.++|++++.   ..|+  +..++.+.|
T Consensus        80 PQ~ili~~g~---~v~~aSH~~It~~~l  104 (105)
T PF11009_consen   80 PQVILIKNGK---VVWHASHWDITAEAL  104 (105)
T ss_dssp             SEEEEEETTE---EEEEEEGGG-SHHHH
T ss_pred             CcEEEEECCE---EEEECccccCCHHhc
Confidence            9999999643   3442  456666665

The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.

>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=95.56  E-value=0.037  Score=46.13  Aligned_cols=110  Identities=10%  Similarity=0.044  Sum_probs=79.8

Q ss_pred             HHHHHhcCCCceeecC-CCchhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhh
Q 013976          142 ADFVFSNKLPLVTIFT-RENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEY  219 (432)
Q Consensus       142 ~~fi~~~~~p~v~~l~-~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~  219 (432)
                      ..|+. .-+.-+.++. ...|-........+++.||.+. ..|+-+-..++.+|+++-+ ..|+.||+..   .+-++..
T Consensus        58 ~~~~~-~GhG~y~ev~~Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e-TrFikvnae~---~PFlv~k  132 (211)
T KOG1672|consen   58 KEWLS-KGHGEYEEVASEKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE-TRFIKVNAEK---APFLVTK  132 (211)
T ss_pred             HHHHH-cCCceEEEeccHHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhccc-ceEEEEeccc---Cceeeee
Confidence            34443 3344566665 4455555556667888899998 8999999999999999999 8999999998   5688999


Q ss_pred             hCCCCCCCcEEEEEeCCCCceec--CC--C---CCCHHHHHHHHHH
Q 013976          220 FGITGEAPKVLAYTGNDDAKKHI--LD--G---ELTLDKIKTFGED  258 (432)
Q Consensus       220 ~~i~~~~~P~i~i~~~~~~~~y~--~~--~---~~~~~~i~~fi~~  258 (432)
                      ++|.-.  |+++++-++.-.-|.  |.  |   +++.+.|..=+..
T Consensus       133 L~IkVL--P~v~l~k~g~~~D~iVGF~dLGnkDdF~te~LE~rL~~  176 (211)
T KOG1672|consen  133 LNIKVL--PTVALFKNGKTVDYVVGFTDLGNKDDFTTETLENRLAK  176 (211)
T ss_pred             eeeeEe--eeEEEEEcCEEEEEEeeHhhcCCCCcCcHHHHHHHHhh
Confidence            999887  999999776532222  21  2   4677777665544

>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD

Probab=95.54  E-value=0.092  Score=45.09  Aligned_cols=92  Identities=16%  Similarity=0.158  Sum_probs=58.9

Q ss_pred             CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCC---------------cccccchhhhhCCCCCCCcEE
Q 013976          167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDN---------------EDVGKPVSEYFGITGEAPKVL  230 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~---------------~~~~~~l~~~~~i~~~~~P~i  230 (432)
                      .+++.++.|+++| +.|+...+.+.++.+++.-++.++..|..+               ......+.+.||+...  |+.
T Consensus        73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~--P~~  150 (189)
T TIGR02661        73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKI--PYG  150 (189)
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCcc--ceE
Confidence            4557788899999 999999999999887765445544421100               0012345567777665  888


Q ss_pred             EEEeCCCCceecCCCC-CCHHHHHHHHHHHhcC
Q 013976          231 AYTGNDDAKKHILDGE-LTLDKIKTFGEDFLEG  262 (432)
Q Consensus       231 ~i~~~~~~~~y~~~~~-~~~~~i~~fi~~~~~g  262 (432)
                      ++++.++...+  .|. .+.+.+.+.++....|
T Consensus       151 ~lID~~G~I~~--~g~~~~~~~le~ll~~l~~~  181 (189)
T TIGR02661       151 VLLDQDGKIRA--KGLTNTREHLESLLEADREG  181 (189)
T ss_pred             EEECCCCeEEE--ccCCCCHHHHHHHHHHHHcC
Confidence            88876543333  343 4667888888776554

This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.

>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

Probab=95.48  E-value=0.051  Score=44.24  Aligned_cols=68  Identities=18%  Similarity=0.235  Sum_probs=47.6

Q ss_pred             CCCcceEEEEEeC-cchhhhHHHHHHHHHhccC--------ceEEEEEecCCcc-------------c---------ccc
Q 013976          167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG--------KLIFVYVQMDNED-------------V---------GKP  215 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~--------~i~f~~vd~~~~~-------------~---------~~~  215 (432)
                      .++++++.|+++| +.|....+.+.++..++++        ++.++.|+.+...             +         ...
T Consensus        24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~  103 (146)
T cd03008          24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE  103 (146)
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence            3567788899999 9999999999998877653        3777777766421             0         013


Q ss_pred             hhhhhCCCCCCCcEEEEEeCC
Q 013976          216 VSEYFGITGEAPKVLAYTGND  236 (432)
Q Consensus       216 l~~~~~i~~~~~P~i~i~~~~  236 (432)
                      +...|++.+.  |+.++++.+
T Consensus       104 l~~~y~v~~i--Pt~vlId~~  122 (146)
T cd03008         104 LEAQFSVEEL--PTVVVLKPD  122 (146)
T ss_pred             HHHHcCCCCC--CEEEEECCC
Confidence            4455666554  888888655

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.

>PLN02399 phospholipid hydroperoxide glutathione peroxidase

Probab=95.47  E-value=0.11  Score=46.12  Aligned_cols=95  Identities=6%  Similarity=-0.098  Sum_probs=63.5

Q ss_pred             CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCc-eEEEEEecCCc-----c---cccchh-hhhCCCC-----------
Q 013976          167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNE-----D---VGKPVS-EYFGITG-----------  224 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~-i~f~~vd~~~~-----~---~~~~l~-~~~~i~~-----------  224 (432)
                      .++.++|.||+.| +.|....+.+.++.++|+++ +.++.|+++..     +   ....++ +.+|+.-           
T Consensus        98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G~  177 (236)
T PLN02399         98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGP  177 (236)
T ss_pred             CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCcc
Confidence            3567788899999 99999999999999999864 77777776421     0   012222 2222210           


Q ss_pred             ---------------------CCCcEEEEEeCCCCceecCCCCCCHHHHHHHHHHHhc
Q 013976          225 ---------------------EAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  261 (432)
Q Consensus       225 ---------------------~~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  261 (432)
                                           ...|+.++++.++...+.+.|..+.+.|.+.|+.+++
T Consensus       178 ~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL~  235 (236)
T PLN02399        178 STAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLLA  235 (236)
T ss_pred             hhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHhc
Confidence                                 0024555666555555667788889999999988774

>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=95.45  E-value=0.12  Score=39.38  Aligned_cols=91  Identities=14%  Similarity=0.168  Sum_probs=58.1

Q ss_pred             CCchhhhcc-CCCcceEEEEEeCcchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCC
Q 013976          158 RENAPSVFE-SPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGND  236 (432)
Q Consensus       158 ~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~  236 (432)
                      .+.+..+.. .....+|-+|....+  .....|.++|..++....|+....      ..+...+++.   .|.++++...
T Consensus         8 ~~~~e~~~~~~~~~~Vvg~f~~~~~--~~~~~F~~vA~~~R~d~~F~~~~~------~~~~~~~~~~---~~~i~l~~~~   76 (102)
T cd03066           8 ERELQAFENIEDDIKLIGYFKSEDS--EHYKAFEEAAEEFHPYIKFFATFD------SKVAKKLGLK---MNEVDFYEPF   76 (102)
T ss_pred             HHHHHHHhcccCCeEEEEEECCCCC--HHHHHHHHHHHhhhcCCEEEEECc------HHHHHHcCCC---CCcEEEeCCC
Confidence            344566665 443444445543332  455678999999998889976553      2456666664   3767777542


Q ss_pred             CCceecC-CCCCCHHHHHHHHHHH
Q 013976          237 DAKKHIL-DGELTLDKIKTFGEDF  259 (432)
Q Consensus       237 ~~~~y~~-~~~~~~~~i~~fi~~~  259 (432)
                      ......| .|..+.+.|.+||...
T Consensus        77 ~e~~~~y~~g~~~~~~l~~fi~~~  100 (102)
T cd03066          77 MEEPVTIPDKPYSEEELVDFVEEH  100 (102)
T ss_pred             CCCCcccCCCCCCHHHHHHHHHHh
Confidence            2233457 7788999999999763

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca

>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain

Probab=95.35  E-value=0.1  Score=41.41  Aligned_cols=41  Identities=15%  Similarity=0.198  Sum_probs=33.6

Q ss_pred             CCCcceEEEEEeC-cchhhhHHHHHHHHHhccC-ceEEEEEec
Q 013976          167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQM  207 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~-~i~f~~vd~  207 (432)
                      .+++.++.||+.| +.|....+.+.++.+++++ .+.++.+..
T Consensus        22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~   64 (126)
T cd03012          22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHS   64 (126)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEecc
Confidence            4567788889999 8999999999999999985 466666654

Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.

>PRK10877 protein disulfide isomerase II DsbC; Provisional

Probab=95.25  E-value=0.17  Score=44.92  Aligned_cols=79  Identities=16%  Similarity=0.270  Sum_probs=54.3

Q ss_pred             CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEE--eC----------------CC----------------
Q 013976          296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKM--DG----------------TT----------------  341 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~i--d~----------------~~----------------  341 (432)
                      +.+.+++.|..+.|++|+++.+.+.++...     ++.+..+  ..                ..                
T Consensus       106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~-----~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~  180 (232)
T PRK10877        106 QEKHVITVFTDITCGYCHKLHEQMKDYNAL-----GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVS  180 (232)
T ss_pred             CCCEEEEEEECCCChHHHHHHHHHHHHhcC-----CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCC
Confidence            457789999999999999998888776431     1222111  11                00                


Q ss_pred             -----ccc-------ccCCCCCCceEEEEeCCCcccCceeccCCCCHHHHHHHHHhc
Q 013976          342 -----NEH-------HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKN  386 (432)
Q Consensus       342 -----~~~-------~~~~i~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~  386 (432)
                           ++.       .+++|+++|+++ +++|.      ...|..+.+.|.++|.++
T Consensus       181 ~~~c~~~v~~~~~la~~lgi~gTPtiv-~~~G~------~~~G~~~~~~L~~~l~~~  230 (232)
T PRK10877        181 PASCDVDIADHYALGVQFGVQGTPAIV-LSNGT------LVPGYQGPKEMKAFLDEH  230 (232)
T ss_pred             cccccchHHHhHHHHHHcCCccccEEE-EcCCe------EeeCCCCHHHHHHHHHHc
Confidence                 000       245999999999 77775      457888999999999864

>PTZ00056 glutathione peroxidase; Provisional

Probab=95.14  E-value=0.11  Score=44.87  Aligned_cols=96  Identities=7%  Similarity=-0.098  Sum_probs=62.0

Q ss_pred             CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCc-eEEEEEecCC--------cccccchhhhhCCCC------------
Q 013976          167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDN--------EDVGKPVSEYFGITG------------  224 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~-i~f~~vd~~~--------~~~~~~l~~~~~i~~------------  224 (432)
                      .++.+++.|+++| +.|....+.+.++.++|.++ +.++.+.++.        .+-...+++.+|+.-            
T Consensus        38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl~d~~v~g~~  117 (199)
T PTZ00056         38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFFEPIEVNGEN  117 (199)
T ss_pred             CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCCCceeeeeeeccCCc
Confidence            3567778889999 89999999999999999864 7888887632        111233445444410            


Q ss_pred             --------------------C--CCc---EEEEEeCCCCceecCCCCCCHHHHHHHHHHHhcC
Q 013976          225 --------------------E--APK---VLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEG  262 (432)
Q Consensus       225 --------------------~--~~P---~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g  262 (432)
                                          .  ..|   +.++++.++...+.+.|..+.+.+.+.|+..++.
T Consensus       118 ~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~ll~~  180 (199)
T PTZ00056        118 THELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAELLGV  180 (199)
T ss_pred             cCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHHHHHH
Confidence                                0  001   2334444443445556777888888888887763

>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=95.14  E-value=0.012  Score=50.52  Aligned_cols=98  Identities=16%  Similarity=0.129  Sum_probs=78.5

Q ss_pred             ceeecCCCchhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccC-ceEEEEEecCCcccccchhhhhCCCCCCCcE
Q 013976          152 LVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNEDVGKPVSEYFGITGEAPKV  229 (432)
Q Consensus       152 ~v~~l~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~-~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~  229 (432)
                      .+..++.+|...++..  .++++|+++| +.|+...+.|...|.--.+ .+.++.||...   ++.+.-+|-+...  |+
T Consensus        25 ~~~~~~eenw~~~l~g--ewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~---npgLsGRF~vtaL--pt   97 (248)
T KOG0913|consen   25 KLTRIDEENWKELLTG--EWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTT---NPGLSGRFLVTAL--PT   97 (248)
T ss_pred             eeEEecccchhhhhch--HHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEe---ccccceeeEEEec--ce
Confidence            5778889998887653  6789999999 9999999999998887666 58999999998   6677777766555  77


Q ss_pred             EEEEeCCCCceecCCCCCCHHHHHHHHHH
Q 013976          230 LAYTGNDDAKKHILDGELTLDKIKTFGED  258 (432)
Q Consensus       230 i~i~~~~~~~~y~~~~~~~~~~i~~fi~~  258 (432)
                      |--.  ..+..-.|.|.++..++..|+..
T Consensus        98 IYHv--kDGeFrrysgaRdk~dfisf~~~  124 (248)
T KOG0913|consen   98 IYHV--KDGEFRRYSGARDKNDFISFEEH  124 (248)
T ss_pred             EEEe--eccccccccCcccchhHHHHHHh
Confidence            7433  34455567999999999999987

>PRK10638 glutaredoxin 3; Provisional

Probab=94.94  E-value=0.049  Score=39.65  Aligned_cols=49  Identities=12%  Similarity=0.222  Sum_probs=35.9

Q ss_pred             EEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--c----cCCCCCCceEEE
Q 013976          301 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--H----RAKSDGFPTILF  357 (432)
Q Consensus       301 lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~----~~~i~~~P~i~~  357 (432)
                      +++|..+||+.|...+..+++.        ++.+..+|++.+..  .    ..+..++|++.+
T Consensus         4 v~ly~~~~Cp~C~~a~~~L~~~--------gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~   58 (83)
T PRK10638          4 VEIYTKATCPFCHRAKALLNSK--------GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI   58 (83)
T ss_pred             EEEEECCCChhHHHHHHHHHHc--------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence            6688899999999998888765        46677788877653  1    235668897733

>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=94.90  E-value=0.059  Score=38.92  Aligned_cols=49  Identities=16%  Similarity=0.314  Sum_probs=37.0

Q ss_pred             EEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc-------ccC-CCCCCceEEE
Q 013976          301 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-------HRA-KSDGFPTILF  357 (432)
Q Consensus       301 lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-------~~~-~i~~~P~i~~  357 (432)
                      +++|..++|++|+.....|.+.        ++.+..+|++....       ... +..++|.|++
T Consensus         3 v~iyt~~~CPyC~~ak~~L~~~--------g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i   59 (80)
T COG0695           3 VTIYTKPGCPYCKRAKRLLDRK--------GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI   59 (80)
T ss_pred             EEEEECCCCchHHHHHHHHHHc--------CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE
Confidence            6788999999999988877744        57777777777763       122 6789998765

>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold

Probab=94.86  E-value=0.15  Score=44.06  Aligned_cols=25  Identities=24%  Similarity=0.444  Sum_probs=22.1

Q ss_pred             CCcEEEEEeCCCChhhhhhHHHHHH
Q 013976          297 SKDVLLEIYAPWCGHCQAFEPTYNK  321 (432)
Q Consensus       297 ~~~~lv~f~~~~c~~c~~~~~~~~~  321 (432)
                      .+..++.|+.+.|++|+++.+.+.+
T Consensus        77 ~~~~i~~f~D~~Cp~C~~~~~~l~~  101 (197)
T cd03020          77 GKRVVYVFTDPDCPYCRKLEKELKP  101 (197)
T ss_pred             CCEEEEEEECCCCccHHHHHHHHhh
Confidence            5789999999999999999888775

They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.

>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins

Probab=94.82  E-value=0.11  Score=42.41  Aligned_cols=78  Identities=19%  Similarity=0.183  Sum_probs=54.9

Q ss_pred             CCCcceEEEEEe-C-cchhhhHHHHHHHHHhccCc-eEEEEEecCCcc------------------cccchhhhhCCC--
Q 013976          167 SPIKNQLLLFAV-S-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNED------------------VGKPVSEYFGIT--  223 (432)
Q Consensus       167 ~~~~~~i~~~~~-~-~~~~~~~~~~~~~a~~~~~~-i~f~~vd~~~~~------------------~~~~l~~~~~i~--  223 (432)
                      .+++.+|.||.. | +.|....+.+.+++++|+++ +.++.+......                  -...+.+.||+.  
T Consensus        27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~  106 (146)
T PF08534_consen   27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTIM  106 (146)
T ss_dssp             TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEEE
T ss_pred             CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCccc
Confidence            456778889999 9 99999999999999997754 666666544332                  123566777866  


Q ss_pred             -------CCCCcEEEEEeCCCCceecCCCC
Q 013976          224 -------GEAPKVLAYTGNDDAKKHILDGE  246 (432)
Q Consensus       224 -------~~~~P~i~i~~~~~~~~y~~~~~  246 (432)
                             ..  |++++++.++...|...|.
T Consensus       107 ~~~~~~~~~--P~~~lId~~G~V~~~~~g~  134 (146)
T PF08534_consen  107 EDPGNGFGI--PTTFLIDKDGKVVYRHVGP  134 (146)
T ss_dssp             CCTTTTSSS--SEEEEEETTSBEEEEEESS
T ss_pred             cccccCCee--cEEEEEECCCEEEEEEeCC
Confidence                   44  8888887776555554443

Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....

>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional

Probab=94.78  E-value=0.067  Score=45.73  Aligned_cols=89  Identities=11%  Similarity=0.125  Sum_probs=59.8

Q ss_pred             CCcEEEEEe-CCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc---------------------------ccCC
Q 013976          297 SKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH---------------------------HRAK  348 (432)
Q Consensus       297 ~~~~lv~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~---------------------------~~~~  348 (432)
                      ++.++++|| +.||..|....+.|.++...+... ++.+.-|+++....                           ..|+
T Consensus        31 Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~-g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~yg  109 (187)
T PRK10382         31 GRWSVFFFYPADFTFVCPTELGDVADHYEELQKL-GVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD  109 (187)
T ss_pred             CCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcC
Confidence            468888988 999999999999999999999753 45555555543110                           2345


Q ss_pred             C----CCC--ceEEEEe-CCCcccCceec--cCCCCHHHHHHHHHhcC
Q 013976          349 S----DGF--PTILFFP-AGNKSFDPINV--DVDRTVVALYKFLKKNA  387 (432)
Q Consensus       349 i----~~~--P~i~~~~-~g~~~~~~~~y--~g~~~~~~l~~fi~~~~  387 (432)
                      +    .+.  |+.+++- +|... ....+  ...++.+.+++.|+..-
T Consensus       110 v~~~~~g~~~r~tfIID~~G~I~-~~~~~~~~~~~~~~eil~~l~alq  156 (187)
T PRK10382        110 NMREDEGLADRATFVVDPQGIIQ-AIEVTAEGIGRDASDLLRKIKAAQ  156 (187)
T ss_pred             CCcccCCceeeEEEEECCCCEEE-EEEEeCCCCCCCHHHHHHHHHhhh
Confidence            4    245  9999994 55432 11112  12578999999886544

>TIGR00365 monothiol glutaredoxin, Grx4 family

Probab=94.77  E-value=0.069  Score=40.22  Aligned_cols=52  Identities=13%  Similarity=0.212  Sum_probs=35.1

Q ss_pred             CCcEEEEEe----CCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--c----cCCCCCCceEE
Q 013976          297 SKDVLLEIY----APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--H----RAKSDGFPTIL  356 (432)
Q Consensus       297 ~~~~lv~f~----~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~----~~~i~~~P~i~  356 (432)
                      +.+++|+-.    +|||++|......|.++        ++.+..+|+..+..  .    .-+..++|.+.
T Consensus        11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~--------~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vf   72 (97)
T TIGR00365        11 ENPVVLYMKGTPQFPQCGFSARAVQILKAC--------GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLY   72 (97)
T ss_pred             cCCEEEEEccCCCCCCCchHHHHHHHHHHc--------CCCEEEEECCCCHHHHHHHHHHhCCCCCCEEE
Confidence            345555544    38999999998888776        46677788876544  1    23556788873

The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.

>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol

Probab=94.64  E-value=0.059  Score=40.79  Aligned_cols=77  Identities=14%  Similarity=0.183  Sum_probs=53.8

Q ss_pred             cccchhhhhcC-CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc------ccCCCC-CCceEEE
Q 013976          286 GNNFDEIVLDE-SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------HRAKSD-GFPTILF  357 (432)
Q Consensus       286 ~~~~~~~~~~~-~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~------~~~~i~-~~P~i~~  357 (432)
                      .+.+++++... .++++++=+++.|+-.......|++......+  .+.++.+|+-+...      .+++|. .-|.+++
T Consensus         7 ~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~--~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~il   84 (105)
T PF11009_consen    7 EEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPD--EIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVIL   84 (105)
T ss_dssp             HHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT------EEEEEGGGGHHHHHHHHHHHT----SSEEEE
T ss_pred             HHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCc--cceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEE
Confidence            35677766443 58899999999999998888888888777766  49999999887765      467888 5799999


Q ss_pred             EeCCCcc
Q 013976          358 FPAGNKS  364 (432)
Q Consensus       358 ~~~g~~~  364 (432)
                      +++|+.+
T Consensus        85 i~~g~~v   91 (105)
T PF11009_consen   85 IKNGKVV   91 (105)
T ss_dssp             EETTEEE
T ss_pred             EECCEEE
Confidence            9999874

The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.

>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B

Probab=94.61  E-value=0.17  Score=36.04  Aligned_cols=70  Identities=19%  Similarity=0.364  Sum_probs=51.3

Q ss_pred             EEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCceecCCC-CCCHHHH
Q 013976          175 LFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDG-ELTLDKI  252 (432)
Q Consensus       175 ~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~-~~~~~~i  252 (432)
                      ++.++ +.|......+++++..+ + +.+-.+|...   .+.+ ..||+...  |++++.  +   ...+.| ..+.+.|
T Consensus         5 v~~~~C~~C~~~~~~~~~~~~~~-~-i~~ei~~~~~---~~~~-~~ygv~~v--PalvIn--g---~~~~~G~~p~~~el   71 (76)
T PF13192_consen    5 VFSPGCPYCPELVQLLKEAAEEL-G-IEVEIIDIED---FEEI-EKYGVMSV--PALVIN--G---KVVFVGRVPSKEEL   71 (76)
T ss_dssp             EECSSCTTHHHHHHHHHHHHHHT-T-EEEEEEETTT---HHHH-HHTT-SSS--SEEEET--T---EEEEESS--HHHHH
T ss_pred             EeCCCCCCcHHHHHHHHHHHHhc-C-CeEEEEEccC---HHHH-HHcCCCCC--CEEEEC--C---EEEEEecCCCHHHH
Confidence            36667 89999999999999999 4 7777778754   4465 89999988  999663  1   345667 6788889


Q ss_pred             HHHHH
Q 013976          253 KTFGE  257 (432)
Q Consensus       253 ~~fi~  257 (432)
                      ..|++
T Consensus        72 ~~~l~   76 (76)
T PF13192_consen   72 KELLE   76 (76)
T ss_dssp             HHHHH
T ss_pred             HHHhC
Confidence            88874

...

>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals

Probab=94.60  E-value=0.23  Score=38.76  Aligned_cols=92  Identities=13%  Similarity=0.127  Sum_probs=60.9

Q ss_pred             CCCcceEEEEEeC-cchhhhHH-HH--HHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCc---
Q 013976          167 SPIKNQLLLFAVS-NDSEKLLP-VF--EEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAK---  239 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~~~~~~~-~~--~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~---  239 (432)
                      +++..+|+++.+. +++..+-. .|  .++.+-++.++.+...|+...+ +..++..+++..+  |.++++....++   
T Consensus        16 e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln~~fv~w~~dv~~~e-g~~la~~l~~~~~--P~~~~l~~~~~~~~v   92 (116)
T cd02991          16 ELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYINTRMLFWACSVAKPE-GYRVSQALRERTY--PFLAMIMLKDNRMTI   92 (116)
T ss_pred             hCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHHcCEEEEEEecCChH-HHHHHHHhCCCCC--CEEEEEEecCCceEE
Confidence            4444455566553 33333321 11  2244445567888888998776 7889999999988  999988543322   


Q ss_pred             eecCCCCCCHHHHHHHHHHHhc
Q 013976          240 KHILDGELTLDKIKTFGEDFLE  261 (432)
Q Consensus       240 ~y~~~~~~~~~~i~~fi~~~~~  261 (432)
                      .....|.++++.+...+..+..
T Consensus        93 v~~i~G~~~~~~ll~~L~~~~~  114 (116)
T cd02991          93 VGRLEGLIQPEDLINRLTFIMD  114 (116)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHh
Confidence            3356899999999998887654

ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.

>PRK15000 peroxidase; Provisional

Probab=94.43  E-value=0.086  Score=45.67  Aligned_cols=89  Identities=7%  Similarity=0.113  Sum_probs=61.4

Q ss_pred             CCCcEEEEEeC-CCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc------------------------------
Q 013976          296 ESKDVLLEIYA-PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------------------------------  344 (432)
Q Consensus       296 ~~~~~lv~f~~-~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~------------------------------  344 (432)
                      .++.++|+||+ .||..|..-.+.|.+++..|+.. ++.+..+.++....                              
T Consensus        33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~-g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia  111 (200)
T PRK15000         33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKR-GVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQ  111 (200)
T ss_pred             CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHH
Confidence            46789999999 59999999999999999999864 56666666663110                              


Q ss_pred             ccCCCC------CCceEEEEe-CCCcccCceec--cCCCCHHHHHHHHHhc
Q 013976          345 HRAKSD------GFPTILFFP-AGNKSFDPINV--DVDRTVVALYKFLKKN  386 (432)
Q Consensus       345 ~~~~i~------~~P~i~~~~-~g~~~~~~~~y--~g~~~~~~l~~fi~~~  386 (432)
                      ..|++.      ..|+.+++. +|... ....+  .-+++.+.++..|+..
T Consensus       112 ~~ygv~~~~~g~~~r~tfiID~~G~I~-~~~~~~~~~gr~~~eilr~l~al  161 (200)
T PRK15000        112 KAYGIEHPDEGVALRGSFLIDANGIVR-HQVVNDLPLGRNIDEMLRMVDAL  161 (200)
T ss_pred             HHcCCccCCCCcEEeEEEEECCCCEEE-EEEecCCCCCCCHHHHHHHHHHh
Confidence            124555      588888885 55432 11111  1267899999988753

>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=94.42  E-value=0.79  Score=34.39  Aligned_cols=105  Identities=12%  Similarity=-0.006  Sum_probs=74.5

Q ss_pred             EEEecccchhhhhcC-CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc------ccCCCC-CCc
Q 013976          282 KIVVGNNFDEIVLDE-SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------HRAKSD-GFP  353 (432)
Q Consensus       282 ~~l~~~~~~~~~~~~-~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~------~~~~i~-~~P  353 (432)
                      .+|+..+.-+...++ ++..+|-|--+-...-.+|.+++.++|+.+..++++.|+.||-+.-+.      ..|+|. .-|
T Consensus         4 rkl~~~~m~e~wedd~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~P   83 (120)
T cd03074           4 RKLKPENMFETWEDDLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFRP   83 (120)
T ss_pred             hhccHHHHHHhhhcccCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCCC
Confidence            345555555555333 467888888888888899999999999999998999999999988876      245554 359


Q ss_pred             eEEEEeCCCcccCceeccC---CCCHHHHHHHHHhc
Q 013976          354 TILFFPAGNKSFDPINVDV---DRTVVALYKFLKKN  386 (432)
Q Consensus       354 ~i~~~~~g~~~~~~~~y~g---~~~~~~l~~fi~~~  386 (432)
                      .|-+..-.....-=....+   ..+++.|.+||++.
T Consensus        84 qIGVV~vtdadSvW~~m~~~~d~~t~~~Le~WiedV  119 (120)
T cd03074          84 QIGVVNVTDADSVWMEMDDDEDLPTAEELEDWIEDV  119 (120)
T ss_pred             ceeeEecccccceeEecccccccCcHHHHHHHHHhh
Confidence            9888754433110012223   37889999999875

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin

>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

Probab=94.39  E-value=0.092  Score=38.91  Aligned_cols=56  Identities=21%  Similarity=0.421  Sum_probs=37.3

Q ss_pred             CCcEEEEEeC----CCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc------ccCCCCCCceEEEEeCCC
Q 013976          297 SKDVLLEIYA----PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------HRAKSDGFPTILFFPAGN  362 (432)
Q Consensus       297 ~~~~lv~f~~----~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~------~~~~i~~~P~i~~~~~g~  362 (432)
                      +.+++|+-.+    |||+.|......|.+.        ++.+..+|+..+..      ...+-.++|.|  |-+|.
T Consensus         7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~--------~i~y~~idv~~~~~~~~~l~~~~g~~tvP~v--fi~g~   72 (90)
T cd03028           7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQL--------GVDFGTFDILEDEEVRQGLKEYSNWPTFPQL--YVNGE   72 (90)
T ss_pred             cCCEEEEEcCCCCCCCCcHHHHHHHHHHHc--------CCCeEEEEcCCCHHHHHHHHHHhCCCCCCEE--EECCE
Confidence            3566665443    7999999988887776        46677777765543      12366789997  44554

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein

>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus

Probab=94.39  E-value=0.18  Score=40.06  Aligned_cols=69  Identities=14%  Similarity=0.087  Sum_probs=42.5

Q ss_pred             ccCCCcceEEEEEeC-cchhhhHHHHH---HHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCc
Q 013976          165 FESPIKNQLLLFAVS-NDSEKLLPVFE---EAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAK  239 (432)
Q Consensus       165 ~~~~~~~~i~~~~~~-~~~~~~~~~~~---~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~  239 (432)
                      -..+++++|.|+++| +.|+.+...+-   ++++..+..+..+.++.+..+  .. ....|   ...|++++++.+...
T Consensus        20 k~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td--~~-~~~~g---~~vPtivFld~~g~v   92 (130)
T cd02960          20 KKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTD--KN-LSPDG---QYVPRIMFVDPSLTV   92 (130)
T ss_pred             HHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCC--CC-cCccC---cccCeEEEECCCCCC
Confidence            456778888889999 99999876432   344445445555566654321  11 11123   346999999877533

They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.

>PLN02412 probable glutathione peroxidase

Probab=94.38  E-value=0.21  Score=41.94  Aligned_cols=42  Identities=5%  Similarity=-0.017  Sum_probs=33.8

Q ss_pred             CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCc-eEEEEEecC
Q 013976          167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMD  208 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~-i~f~~vd~~  208 (432)
                      .++..++.|++.| +.|....+.+.++.++|+++ +.++.|.++
T Consensus        28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~   71 (167)
T PLN02412         28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCN   71 (167)
T ss_pred             CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEeccc
Confidence            3456677788999 88888899999999999964 777777764

>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A

Probab=94.37  E-value=0.05  Score=39.49  Aligned_cols=65  Identities=17%  Similarity=0.171  Sum_probs=45.6

Q ss_pred             ccCCCcceEEEEEeC-cchhhhHHHH---HHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeC
Q 013976          165 FESPIKNQLLLFAVS-NDSEKLLPVF---EEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGN  235 (432)
Q Consensus       165 ~~~~~~~~i~~~~~~-~~~~~~~~~~---~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~  235 (432)
                      -.++++.+|.|+++| ..|+.+...+   .++...+..++.++.+|.+..+   ......+ .+  +|+++++++
T Consensus        14 ~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~---~~~~~~~-~~--~P~~~~ldp   82 (82)
T PF13899_consen   14 KKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDED---PNAQFDR-QG--YPTFFFLDP   82 (82)
T ss_dssp             HHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHH---HHHHHHH-CS--SSEEEEEET
T ss_pred             HHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCC---hhHHhCC-cc--CCEEEEeCC
Confidence            356778888899999 9999998766   4455556677999999998743   2222222 33  599998853

...

>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=94.13  E-value=0.12  Score=51.09  Aligned_cols=102  Identities=13%  Similarity=0.131  Sum_probs=73.5

Q ss_pred             ecCCC-chhhhccCCC--cceEEEEEeC-cchhhhHHHHH---HHHHhccCceEEEEEecCCcc-cccchhhhhCCCCCC
Q 013976          155 IFTRE-NAPSVFESPI--KNQLLLFAVS-NDSEKLLPVFE---EAAKSFKGKLIFVYVQMDNED-VGKPVSEYFGITGEA  226 (432)
Q Consensus       155 ~l~~~-~~~~~~~~~~--~~~i~~~~~~-~~~~~~~~~~~---~~a~~~~~~i~f~~vd~~~~~-~~~~l~~~~~i~~~~  226 (432)
                      .+++. ..++...+++  ++.+-||++| -.|+.+++..-   +++.+..+ +....+|.++.+ -..+++++||+-+. 
T Consensus       458 ~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~-~vlLqaDvT~~~p~~~~lLk~~~~~G~-  535 (569)
T COG4232         458 PISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQD-VVLLQADVTANDPAITALLKRLGVFGV-  535 (569)
T ss_pred             ccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCC-eEEEEeeecCCCHHHHHHHHHcCCCCC-
Confidence            34444 4555555555  7788899999 89999865332   24444445 888999998742 24567788888776 


Q ss_pred             CcEEEEEeCCCCceecCCCCCCHHHHHHHHHHH
Q 013976          227 PKVLAYTGNDDAKKHILDGELTLDKIKTFGEDF  259 (432)
Q Consensus       227 ~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~  259 (432)
                       |++++++.+...+-...|-++.+.+.+++++.
T Consensus       536 -P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~  567 (569)
T COG4232         536 -PTYLFFGPQGSEPEILTGFLTADAFLEHLERA  567 (569)
T ss_pred             -CEEEEECCCCCcCcCCcceecHHHHHHHHHHh
Confidence             99999986666665678899999999999874

>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins

Probab=93.96  E-value=0.19  Score=37.19  Aligned_cols=37  Identities=27%  Similarity=0.511  Sum_probs=28.6

Q ss_pred             EEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeC
Q 013976          301 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG  339 (432)
Q Consensus       301 lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~  339 (432)
                      ++.|+.+.|++|..+.+.+.++.....+  ++.+.....
T Consensus         1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~--~~~~~~~~~   37 (98)
T cd02972           1 IVEFFDPLCPYCYLFEPELEKLLYADDG--GVRVVYRPF   37 (98)
T ss_pred             CeEEECCCCHhHHhhhHHHHHHHhhcCC--cEEEEEecc
Confidence            4679999999999999999999855555  455555543

Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.

>PRK13190 putative peroxiredoxin; Provisional

Probab=93.71  E-value=0.13  Score=44.73  Aligned_cols=90  Identities=8%  Similarity=0.065  Sum_probs=60.1

Q ss_pred             CCcEE-EEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCcc------------------c-----------cc
Q 013976          297 SKDVL-LEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE------------------H-----------HR  346 (432)
Q Consensus       297 ~~~~l-v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~------------------~-----------~~  346 (432)
                      ++.++ ++|++.||..|..-.+.|.++...+++. ++.+..+.++...                  .           ..
T Consensus        27 gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~-~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~  105 (202)
T PRK13190         27 GKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKL-GVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELARE  105 (202)
T ss_pred             CCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHH
Confidence            45454 4689999999999999999999999753 5666666555210                  0           12


Q ss_pred             CCCC------CCceEEEEeCCCcccCcee-c--cCCCCHHHHHHHHHhcCC
Q 013976          347 AKSD------GFPTILFFPAGNKSFDPIN-V--DVDRTVVALYKFLKKNAS  388 (432)
Q Consensus       347 ~~i~------~~P~i~~~~~g~~~~~~~~-y--~g~~~~~~l~~fi~~~~~  388 (432)
                      |++.      .+|+++++.++..+ +.+. |  .+.++.++++..|+....
T Consensus       106 ygv~~~~~g~~~p~~fiId~~G~I-~~~~~~~~~~gr~~~ellr~l~~l~~  155 (202)
T PRK13190        106 YNLIDENSGATVRGVFIIDPNQIV-RWMIYYPAETGRNIDEIIRITKALQV  155 (202)
T ss_pred             cCCccccCCcEEeEEEEECCCCEE-EEEEEeCCCCCCCHHHHHHHHHHhhh
Confidence            3553      47999999544444 2211 2  346899999999886653

>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=93.60  E-value=0.63  Score=36.54  Aligned_cols=96  Identities=14%  Similarity=0.209  Sum_probs=64.5

Q ss_pred             ccchhhhh-cCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEEE-eCCC
Q 013976          287 NNFDEIVL-DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFF-PAGN  362 (432)
Q Consensus       287 ~~~~~~~~-~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~-~~g~  362 (432)
                      ...++.+. +.++.+++-|-..|-..|-++-.++.++|...++  -..++.+|+++-+.  .-|.+. -|.-++| -+++
T Consensus         9 ~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~--~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF~rnk   85 (133)
T PF02966_consen    9 WHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKN--FAVIYLVDIDEVPDFNQMYELY-DPCTVMFFFRNK   85 (133)
T ss_dssp             HHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT--TEEEEEEETTTTHCCHHHTTS--SSEEEEEEETTE
T ss_pred             chHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhc--ceEEEEEEcccchhhhcccccC-CCeEEEEEecCe
Confidence            44555554 4458899999999999999999999999999998  69999999997766  567777 7765544 3443


Q ss_pred             ccc------CceeccC-CCCHHHHHHHHHh
Q 013976          363 KSF------DPINVDV-DRTVVALYKFLKK  385 (432)
Q Consensus       363 ~~~------~~~~y~g-~~~~~~l~~fi~~  385 (432)
                      ...      +-....+ -.+.+.+++.++-
T Consensus        86 hm~vD~GtgnnnKin~~~~~kqe~iDiie~  115 (133)
T PF02966_consen   86 HMMVDFGTGNNNKINWAFEDKQEFIDIIET  115 (133)
T ss_dssp             EEEEESSSSSSSSBCS--SCHHHHHHHHHH
T ss_pred             EEEEEecCCCccEEEEEcCcHHHHHHHHHH
Confidence            320      0012233 3456777666654

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

Probab=93.55  E-value=0.36  Score=32.00  Aligned_cols=58  Identities=22%  Similarity=0.367  Sum_probs=42.4

Q ss_pred             EEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchh---hhhCCCCCCCcEEEEEeCC
Q 013976          173 LLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVS---EYFGITGEAPKVLAYTGND  236 (432)
Q Consensus       173 i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~---~~~~i~~~~~P~i~i~~~~  236 (432)
                      ++|+..+ +.|+...+.+.++ ......+.+..+++....   ...   ..+++...  |++++.+.+
T Consensus         2 ~~~~~~~c~~c~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--P~~~~~~~~   63 (69)
T cd01659           2 VLFYAPWCPFCQALRPVLAEL-ALLNKGVKFEAVDVDEDP---ALEKELKRYGVGGV--PTLVVFGPG   63 (69)
T ss_pred             EEEECCCChhHHhhhhHHHHH-HhhCCCcEEEEEEcCCCh---HHhhHHHhCCCccc--cEEEEEeCC
Confidence            5667777 8999999999988 445566999999998743   323   25566655  999888654

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.

>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti

Probab=93.35  E-value=0.19  Score=41.12  Aligned_cols=39  Identities=21%  Similarity=0.439  Sum_probs=30.7

Q ss_pred             CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEe
Q 013976          297 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD  338 (432)
Q Consensus       297 ~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id  338 (432)
                      .+..++.|+.++|++|..+.+.+.++...+.+   +.+...+
T Consensus         5 a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~---~~~~~~~   43 (154)
T cd03023           5 GDVTIVEFFDYNCGYCKKLAPELEKLLKEDPD---VRVVFKE   43 (154)
T ss_pred             CCEEEEEEECCCChhHHHhhHHHHHHHHHCCC---ceEEEEe
Confidence            46789999999999999999999998776643   4454444

It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.

>PRK10824 glutaredoxin-4; Provisional

Probab=93.30  E-value=0.14  Score=39.76  Aligned_cols=56  Identities=21%  Similarity=0.298  Sum_probs=33.4

Q ss_pred             CCcEEEEEeC----CCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--c----cCCCCCCceEEEEeCCC
Q 013976          297 SKDVLLEIYA----PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--H----RAKSDGFPTILFFPAGN  362 (432)
Q Consensus       297 ~~~~lv~f~~----~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~----~~~i~~~P~i~~~~~g~  362 (432)
                      +.+++|+--+    |||+.|......|..+        ++.+..+|+..+..  .    .-+-.++|.|  |-+|.
T Consensus        14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~--------~i~~~~idi~~d~~~~~~l~~~sg~~TVPQI--FI~G~   79 (115)
T PRK10824         14 ENPILLYMKGSPKLPSCGFSAQAVQALSAC--------GERFAYVDILQNPDIRAELPKYANWPTFPQL--WVDGE   79 (115)
T ss_pred             cCCEEEEECCCCCCCCCchHHHHHHHHHHc--------CCCceEEEecCCHHHHHHHHHHhCCCCCCeE--EECCE
Confidence            3555555443    6999999998888776        24444566655433  1    1244566664  44554

>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine

Probab=93.23  E-value=0.14  Score=44.43  Aligned_cols=42  Identities=14%  Similarity=0.241  Sum_probs=34.0

Q ss_pred             cEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCC
Q 013976          299 DVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT  341 (432)
Q Consensus       299 ~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~  341 (432)
                      .+|++|++.||..|....+.|.+++..+++. ++.++-++++.
T Consensus        28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~-gv~vigvS~D~   69 (203)
T cd03016          28 GILFSHPADFTPVCTTELGAFAKLAPEFKKR-NVKLIGLSVDS   69 (203)
T ss_pred             EEEEEecCCCCCcCHHHHHHHHHHHHHHHHc-CCEEEEEECCC
Confidence            4566889999999999999999999999763 56677666654

They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an

>PRK13191 putative peroxiredoxin; Provisional

Probab=93.12  E-value=0.17  Score=44.29  Aligned_cols=88  Identities=8%  Similarity=0.106  Sum_probs=58.4

Q ss_pred             CCcE-EEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc-----------------------------cc
Q 013976          297 SKDV-LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----------------------------HR  346 (432)
Q Consensus       297 ~~~~-lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-----------------------------~~  346 (432)
                      ++.+ |++|++.||..|....+.|.+++..|+.. ++.++-++++....                             ..
T Consensus        33 GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~-g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~  111 (215)
T PRK13191         33 GRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKL-NTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKR  111 (215)
T ss_pred             CCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHH
Confidence            4444 45889999999999999999999999753 56666666653221                             12


Q ss_pred             CCC-------CCCceEEEEeCCCcccCcee-cc--CCCCHHHHHHHHHhc
Q 013976          347 AKS-------DGFPTILFFPAGNKSFDPIN-VD--VDRTVVALYKFLKKN  386 (432)
Q Consensus       347 ~~i-------~~~P~i~~~~~g~~~~~~~~-y~--g~~~~~~l~~fi~~~  386 (432)
                      |++       ...|+.+++.....+ +.+. +.  .+++.+.++..|+..
T Consensus       112 ygv~~~~~~~~~~r~tfIID~~G~I-r~~~~~~~~~gr~~~eilr~l~al  160 (215)
T PRK13191        112 LGMIHAESSTATVRAVFIVDDKGTV-RLILYYPMEIGRNIDEILRAIRAL  160 (215)
T ss_pred             cCCcccccCCceeEEEEEECCCCEE-EEEEecCCCCCCCHHHHHHHHHHh
Confidence            233       236888888544444 2222 22  267999999998754

>PRK13599 putative peroxiredoxin; Provisional

Probab=93.10  E-value=0.17  Score=44.36  Aligned_cols=88  Identities=14%  Similarity=0.117  Sum_probs=60.2

Q ss_pred             CCc-EEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc-----------------------------cc
Q 013976          297 SKD-VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----------------------------HR  346 (432)
Q Consensus       297 ~~~-~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-----------------------------~~  346 (432)
                      ++. +|++|++.||..|..-.+.|.++...|.+. ++.++-++++....                             ..
T Consensus        28 Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~-gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~  106 (215)
T PRK13599         28 GKWFVLFSHPADFTPVCTTEFVEFARKANDFKEL-NTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQ  106 (215)
T ss_pred             CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHH
Confidence            344 567899999999999999999999999753 56666666664210                             12


Q ss_pred             CCC-------CCCceEEEEeCCCcccCcee-cc--CCCCHHHHHHHHHhc
Q 013976          347 AKS-------DGFPTILFFPAGNKSFDPIN-VD--VDRTVVALYKFLKKN  386 (432)
Q Consensus       347 ~~i-------~~~P~i~~~~~g~~~~~~~~-y~--g~~~~~~l~~fi~~~  386 (432)
                      |++       ...|+++++.....+ +.+. |.  ..++.+.|++.|+..
T Consensus       107 yg~~~~~~~~~~~R~tfIID~dG~I-r~~~~~p~~~gr~~~eilr~l~~l  155 (215)
T PRK13599        107 LGMIHPGKGTNTVRAVFIVDDKGTI-RLIMYYPQEVGRNVDEILRALKAL  155 (215)
T ss_pred             cCCCccCCCCceeeEEEEECCCCEE-EEEEEcCCCCCCCHHHHHHHHHHh
Confidence            344       257999999544444 2332 22  257889999998754

>PTZ00137 2-Cys peroxiredoxin; Provisional

Probab=93.09  E-value=0.21  Score=45.01  Aligned_cols=88  Identities=10%  Similarity=0.064  Sum_probs=58.3

Q ss_pred             CCcEEEEEe-CCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCc-----------------cc-------------c
Q 013976          297 SKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN-----------------EH-------------H  345 (432)
Q Consensus       297 ~~~~lv~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-----------------~~-------------~  345 (432)
                      ++.+|++|| +.||..|..-.+.|.++...+++. ++.+.-|.++.-                 ..             .
T Consensus        98 gk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~-gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iak  176 (261)
T PTZ00137         98 DSYGLLVFYPLDFTFVCPSELLGFSERLKEFEER-GVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSK  176 (261)
T ss_pred             CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHH
Confidence            456666666 899999999999999999999753 455555555441                 00             1


Q ss_pred             cCCCC-----CCceEEEEe-CCCcccCceec--cCCCCHHHHHHHHHhc
Q 013976          346 RAKSD-----GFPTILFFP-AGNKSFDPINV--DVDRTVVALYKFLKKN  386 (432)
Q Consensus       346 ~~~i~-----~~P~i~~~~-~g~~~~~~~~y--~g~~~~~~l~~fi~~~  386 (432)
                      .|++.     ..|+.+++. +|... ....+  ..+++.++++..|...
T Consensus       177 ayGv~~~~g~a~R~tFIID~dG~I~-~~~~~~~~~gr~v~eiLr~l~al  224 (261)
T PTZ00137        177 SFGLLRDEGFSHRASVLVDKAGVVK-HVAVYDLGLGRSVDETLRLFDAV  224 (261)
T ss_pred             HcCCCCcCCceecEEEEECCCCEEE-EEEEeCCCCCCCHHHHHHHHHHh
Confidence            23553     479999995 55432 11112  2367899999888644

>TIGR02540 gpx7 putative glutathione peroxidase Gpx7

Probab=92.86  E-value=0.76  Score=37.81  Aligned_cols=41  Identities=5%  Similarity=0.001  Sum_probs=34.3

Q ss_pred             CCCcceEEEEEeC-cchhhhHHHHHHHHHhccC-ceEEEEEec
Q 013976          167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQM  207 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~-~i~f~~vd~  207 (432)
                      .+++++|.++++| +.|....+.+.+++++|++ .+.++.+++
T Consensus        21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~   63 (153)
T TIGR02540        21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPC   63 (153)
T ss_pred             CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEec
Confidence            3556678888999 9999999999999999985 488888875

This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.

>PTZ00253 tryparedoxin peroxidase; Provisional

Probab=92.51  E-value=0.27  Score=42.60  Aligned_cols=44  Identities=14%  Similarity=0.148  Sum_probs=35.1

Q ss_pred             CCcEEEEEeC-CCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCC
Q 013976          297 SKDVLLEIYA-PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT  341 (432)
Q Consensus       297 ~~~~lv~f~~-~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~  341 (432)
                      ++.++|+||+ .||..|....+.+.+++..|... ++.++.|+++.
T Consensus        36 Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~-g~~vv~IS~d~   80 (199)
T PTZ00253         36 GKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNEL-NCEVLACSMDS   80 (199)
T ss_pred             CCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHc-CCEEEEEeCCC
Confidence            5678889995 78999988888999999999864 67777777663

>PRK13189 peroxiredoxin; Provisional

Probab=92.39  E-value=0.23  Score=43.74  Aligned_cols=88  Identities=13%  Similarity=0.110  Sum_probs=57.8

Q ss_pred             CC-cEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc-----------------------------cc
Q 013976          297 SK-DVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----------------------------HR  346 (432)
Q Consensus       297 ~~-~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-----------------------------~~  346 (432)
                      ++ .+|++|++.||..|....+.|.+++..|++. ++.++.+.++....                             ..
T Consensus        35 Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~-~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~  113 (222)
T PRK13189         35 GKWFVLFSHPADFTPVCTTEFVAFQKRYDEFREL-NTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKK  113 (222)
T ss_pred             CCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHH
Confidence            44 4556788999999999999999999999753 45565555543110                             12


Q ss_pred             CCCC-------CCceEEEEeCCCcccCceec---cCCCCHHHHHHHHHhc
Q 013976          347 AKSD-------GFPTILFFPAGNKSFDPINV---DVDRTVVALYKFLKKN  386 (432)
Q Consensus       347 ~~i~-------~~P~i~~~~~g~~~~~~~~y---~g~~~~~~l~~fi~~~  386 (432)
                      |++.       ..|+.+++.....+ +.+.+   ...++.+.++..|+..
T Consensus       114 ygv~~~~~~~~~~r~tfIID~~G~I-r~~~~~~~~~gr~~~eilr~l~al  162 (222)
T PRK13189        114 LGMISPGKGTNTVRAVFIIDPKGII-RAILYYPQEVGRNMDEILRLVKAL  162 (222)
T ss_pred             hCCCccccCCCceeEEEEECCCCeE-EEEEecCCCCCCCHHHHHHHHHHh
Confidence            3432       56888888544444 22222   2467889999988754

>KOG3414 consensus Component of the U4/U6

Probab=92.07  E-value=2.2  Score=33.11  Aligned_cols=93  Identities=12%  Similarity=0.116  Sum_probs=64.4

Q ss_pred             CCCcceEEEE-EeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCceecC-
Q 013976          167 SPIKNQLLLF-AVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHIL-  243 (432)
Q Consensus       167 ~~~~~~i~~~-~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~-  243 (432)
                      +....+++=| .+| +.|.++-..+.++|+...+-..+..+|.++   -+.+.+.|++...  |+++++-+++.-+..+ 
T Consensus        21 t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~Iylvdide---V~~~~~~~~l~~p--~tvmfFfn~kHmkiD~g   95 (142)
T KOG3414|consen   21 TEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDE---VPDFVKMYELYDP--PTVMFFFNNKHMKIDLG   95 (142)
T ss_pred             ccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecch---hhhhhhhhcccCC--ceEEEEEcCceEEEeeC
Confidence            3334444444 444 789999999999999999988888999987   5688899999765  7666554443222222 


Q ss_pred             CCC--------CCHHHHHHHHHHHhcCCc
Q 013976          244 DGE--------LTLDKIKTFGEDFLEGKL  264 (432)
Q Consensus       244 ~~~--------~~~~~i~~fi~~~~~g~l  264 (432)
                      .|+        -+.+.+.+-++-...|-.
T Consensus        96 tgdn~Kin~~~~~kq~~Idiie~iyRga~  124 (142)
T KOG3414|consen   96 TGDNNKINFAFEDKQEFIDIIETIYRGAR  124 (142)
T ss_pred             CCCCceEEEEeccHHHHHHHHHHHHHhhh
Confidence            222        357778888877766554

U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells

Probab=92.04  E-value=0.56  Score=36.78  Aligned_cols=44  Identities=16%  Similarity=0.195  Sum_probs=35.6

Q ss_pred             CCCcceEEEEEe-C-cchhhhHHHHHHHHHhccC-ceEEEEEecCCc
Q 013976          167 SPIKNQLLLFAV-S-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNE  210 (432)
Q Consensus       167 ~~~~~~i~~~~~-~-~~~~~~~~~~~~~a~~~~~-~i~f~~vd~~~~  210 (432)
                      .+++.+|.||.. | +.|....+.+.++..+++. .+.++.+..+..
T Consensus        24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~   70 (124)
T PF00578_consen   24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDP   70 (124)
T ss_dssp             TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSH
T ss_pred             CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccc
Confidence            456778888888 7 8999999999999999985 478877776553

Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....

>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds

Probab=92.00  E-value=0.93  Score=34.76  Aligned_cols=89  Identities=15%  Similarity=0.201  Sum_probs=53.2

Q ss_pred             CchhhhccCC-CcceEEEEEeCcchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCC
Q 013976          159 ENAPSVFESP-IKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDD  237 (432)
Q Consensus       159 ~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~  237 (432)
                      +.+..+.... ...+|-+|....+  .....|.++|..+++...|+.....      .+...+++..   |.++++.+..
T Consensus         9 ~ele~f~~~~~~~~VVG~F~~~~~--~~~~~F~~vA~~~Rdd~~F~~t~~~------~~~~~~~~~~---~~vvl~rp~~   77 (107)
T cd03068           9 KQVQEFLRDGDDVIIIGVFSGEED--PAYQLYQDAANSLREDYKFHHTFDS------EIFKSLKVSP---GQLVVFQPEK   77 (107)
T ss_pred             HHHHHHHhcCCCEEEEEEECCCCC--HHHHHHHHHHHhcccCCEEEEEChH------HHHHhcCCCC---CceEEECcHH
Confidence            3344544444 3444445544322  3556788999999998999776533      4567777753   4455664433


Q ss_pred             C------ceecCCCC-CCHHH-HHHHHHH
Q 013976          238 A------KKHILDGE-LTLDK-IKTFGED  258 (432)
Q Consensus       238 ~------~~y~~~~~-~~~~~-i~~fi~~  258 (432)
                      .      ....|.|. .+.+. |..|+++
T Consensus        78 ~~~k~e~~~~~~~~~~~~~~~~~~~f~~~  106 (107)
T cd03068          78 FQSKYEPKSHVLNKKDSTSEDELKDFFKE  106 (107)
T ss_pred             HhhhcCcceeeeeccccchHHHHHHHHhc
Confidence            1      22345665 56655 9999975

It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.

>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A

Probab=91.81  E-value=0.59  Score=38.68  Aligned_cols=43  Identities=19%  Similarity=0.265  Sum_probs=35.0

Q ss_pred             CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeC
Q 013976          297 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG  339 (432)
Q Consensus       297 ~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~  339 (432)
                      .+.+|+.|....|++|..+.+.+.++.+.+-+..++.|...+.
T Consensus        12 a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~   54 (162)
T PF13462_consen   12 APITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPV   54 (162)
T ss_dssp             TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEES
T ss_pred             CCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEc
Confidence            4678999999999999999999999999983333788888776

...

>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=91.76  E-value=0.96  Score=34.39  Aligned_cols=65  Identities=18%  Similarity=0.239  Sum_probs=50.4

Q ss_pred             CCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecC-CcccccchhhhhC--CCCCCCcEEEEEeCCC
Q 013976          168 PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMD-NEDVGKPVSEYFG--ITGEAPKVLAYTGNDD  237 (432)
Q Consensus       168 ~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~-~~~~~~~l~~~~~--i~~~~~P~i~i~~~~~  237 (432)
                      +.+.++.||++| +.|+.+.+.+.+++.++...+.+..+|.. .   .+.+...++  +...  |.+.++..+.
T Consensus        32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~~--p~~~~~~~~~  100 (127)
T COG0526          32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDE---NPDLAAEFGVAVRSI--PTLLLFKDGK  100 (127)
T ss_pred             CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCC---ChHHHHHHhhhhccC--CeEEEEeCcc
Confidence            334555567888 99999999999999999988899999986 3   457788888  6666  8887654443

>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family

Probab=91.72  E-value=0.82  Score=31.74  Aligned_cols=71  Identities=14%  Similarity=0.195  Sum_probs=47.9

Q ss_pred             eEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcc-cccchhhhhCCCCCCCcEEEEEeCCCCceecCCCCCCH
Q 013976          172 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED-VGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTL  249 (432)
Q Consensus       172 ~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~-~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~~~~  249 (432)
                      +.+|+.+| +.|+...+.+.+.      .+.+..+|.+... ....+++.+|+...  |++++.  +  +.  +.| .+.
T Consensus         2 i~lf~~~~C~~C~~~~~~l~~~------~i~~~~vdi~~~~~~~~~~~~~~~~~~v--P~~~~~--~--~~--~~g-~~~   66 (74)
T TIGR02196         2 VKVYTTPWCPPCKKAKEYLTSK------GIAFEEIDVEKDSAAREEVLKVLGQRGV--PVIVIG--H--KI--IVG-FDP   66 (74)
T ss_pred             EEEEcCCCChhHHHHHHHHHHC------CCeEEEEeccCCHHHHHHHHHHhCCCcc--cEEEEC--C--EE--Eee-CCH
Confidence            45677788 9999988777652      3778888887632 01235667888776  999763  2  22  445 688


Q ss_pred             HHHHHHHH
Q 013976          250 DKIKTFGE  257 (432)
Q Consensus       250 ~~i~~fi~  257 (432)
                      +.|.+|++
T Consensus        67 ~~i~~~i~   74 (74)
T TIGR02196        67 EKLDQLLE   74 (74)
T ss_pred             HHHHHHhC
Confidence            88888763

This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.

>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=91.50  E-value=3.1  Score=32.73  Aligned_cols=93  Identities=10%  Similarity=0.140  Sum_probs=60.3

Q ss_pred             cCCCcceEEEEE-eC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCC-------
Q 013976          166 ESPIKNQLLLFA-VS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGND-------  236 (432)
Q Consensus       166 ~~~~~~~i~~~~-~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~-------  236 (432)
                      .+....+++=|. +| +.|.++-..+.++|++.++-..+..+|.++   -+.+.+.|.+. .+..++.++.+.       
T Consensus        17 ~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~---Vpdfn~~yel~-dP~tvmFF~rnkhm~vD~G   92 (133)
T PF02966_consen   17 SEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDE---VPDFNQMYELY-DPCTVMFFFRNKHMMVDFG   92 (133)
T ss_dssp             H-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTT---THCCHHHTTS--SSEEEEEEETTEEEEEESS
T ss_pred             ccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEccc---chhhhcccccC-CCeEEEEEecCeEEEEEec
Confidence            344455555454 44 789999999999999999999999999997   56888999997 423333333221       


Q ss_pred             CCceecCCCCC-CHHHHHHHHHHHhcC
Q 013976          237 DAKKHILDGEL-TLDKIKTFGEDFLEG  262 (432)
Q Consensus       237 ~~~~y~~~~~~-~~~~i~~fi~~~~~g  262 (432)
                      .+...+.++.+ +.+++..-++-+..|
T Consensus        93 tgnnnKin~~~~~kqe~iDiie~iyrg  119 (133)
T PF02966_consen   93 TGNNNKINWAFEDKQEFIDIIETIYRG  119 (133)
T ss_dssp             SSSSSSBCS--SCHHHHHHHHHHHHHH
T ss_pred             CCCccEEEEEcCcHHHHHHHHHHHHHH
Confidence            12223333333 567777777776554

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.

>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides

Probab=91.41  E-value=1.8  Score=36.38  Aligned_cols=92  Identities=15%  Similarity=0.098  Sum_probs=57.6

Q ss_pred             CCcceEEEE-EeC-cchhhhHHHHHHHHHhccC-ceEEEEEecCCcc-------------------------cccchhhh
Q 013976          168 PIKNQLLLF-AVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNED-------------------------VGKPVSEY  219 (432)
Q Consensus       168 ~~~~~i~~~-~~~-~~~~~~~~~~~~~a~~~~~-~i~f~~vd~~~~~-------------------------~~~~l~~~  219 (432)
                      ++..+|.|| ..| +.|....+.+.+++.+|.+ .+.++.|.++...                         ....+.+.
T Consensus        29 Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~  108 (173)
T cd03015          29 GKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISRD  108 (173)
T ss_pred             CCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHHH
Confidence            445555565 567 8999999999999999974 3555555443210                         02244567


Q ss_pred             hCCC----CCCCcEEEEEeCCCCceecCC----CCCCHHHHHHHHHHH
Q 013976          220 FGIT----GEAPKVLAYTGNDDAKKHILD----GELTLDKIKTFGEDF  259 (432)
Q Consensus       220 ~~i~----~~~~P~i~i~~~~~~~~y~~~----~~~~~~~i~~fi~~~  259 (432)
                      ||+.    +...|+.++++.+....+.+.    ...+.+.|.+.|+..
T Consensus       109 ~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~  156 (173)
T cd03015         109 YGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL  156 (173)
T ss_pred             hCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            7775    224578888877664445442    234667788888764

The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric

>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional

Probab=91.03  E-value=1.9  Score=38.82  Aligned_cols=28  Identities=14%  Similarity=0.338  Sum_probs=22.6

Q ss_pred             CCCcEEEEEeCCCChhhhhhHHHHHHHH
Q 013976          296 ESKDVLLEIYAPWCGHCQAFEPTYNKLA  323 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la  323 (432)
                      +.+.+++.|..+.|++|+++...+..+.
T Consensus       116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~  143 (251)
T PRK11657        116 DAPRIVYVFADPNCPYCKQFWQQARPWV  143 (251)
T ss_pred             CCCeEEEEEECCCChhHHHHHHHHHHHh
Confidence            3467899999999999999987766543

>PTZ00256 glutathione peroxidase; Provisional

Probab=90.76  E-value=2.2  Score=36.32  Aligned_cols=41  Identities=15%  Similarity=0.106  Sum_probs=31.7

Q ss_pred             CCcce-EEEEEeC-cchhhhHHHHHHHHHhccCc-eEEEEEecC
Q 013976          168 PIKNQ-LLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMD  208 (432)
Q Consensus       168 ~~~~~-i~~~~~~-~~~~~~~~~~~~~a~~~~~~-i~f~~vd~~  208 (432)
                      +++++ +++++.| +.|....+.+.++.++|+++ +.++.+.++
T Consensus        40 Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~   83 (183)
T PTZ00256         40 GKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCN   83 (183)
T ss_pred             CCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecc
Confidence            44443 4457888 99999999999999999864 777777653

>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional

Probab=90.73  E-value=0.33  Score=47.17  Aligned_cols=49  Identities=10%  Similarity=0.183  Sum_probs=37.0

Q ss_pred             EEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--c---c---------CCCCCCceEEE
Q 013976          301 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--H---R---------AKSDGFPTILF  357 (432)
Q Consensus       301 lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~---~---------~~i~~~P~i~~  357 (432)
                      ++.|..+||++|......|.+.        ++.+..+|+++...  .   +         .+..++|+|.+
T Consensus         4 V~vys~~~Cp~C~~aK~~L~~~--------gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi   66 (410)
T PRK12759          4 VRIYTKTNCPFCDLAKSWFGAN--------DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV   66 (410)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHC--------CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE
Confidence            7789999999999988777775        57777888876553  1   1         24678899855

>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=90.69  E-value=2.3  Score=34.44  Aligned_cols=91  Identities=12%  Similarity=0.215  Sum_probs=57.6

Q ss_pred             cceEEEEEeC--cchhhhHHHHH---HHHHhccCceEEEEEecCCcc-------------cccchhhhhCCCCCCCcEEE
Q 013976          170 KNQLLLFAVS--NDSEKLLPVFE---EAAKSFKGKLIFVYVQMDNED-------------VGKPVSEYFGITGEAPKVLA  231 (432)
Q Consensus       170 ~~~i~~~~~~--~~~~~~~~~~~---~~a~~~~~~i~f~~vd~~~~~-------------~~~~l~~~~~i~~~~~P~i~  231 (432)
                      +.++++|...  .-|..++..+.   ++-+-+.+++.++.++...+.             -.+++++.|++++.  |+++
T Consensus        43 Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrst--Ptfv  120 (182)
T COG2143          43 KYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRST--PTFV  120 (182)
T ss_pred             cEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccC--ceEE
Confidence            4455555544  67888765432   344444555666666544321             12478899999999  9999


Q ss_pred             EEeCCCCceecCCCCCCHHHHHHHHHHHhcC
Q 013976          232 YTGNDDAKKHILDGELTLDKIKTFGEDFLEG  262 (432)
Q Consensus       232 i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g  262 (432)
                      +++..+...+...|.+.++++..-+.-+-.|
T Consensus       121 Ffdk~Gk~Il~lPGY~ppe~Fl~vlkYVa~g  151 (182)
T COG2143         121 FFDKTGKTILELPGYMPPEQFLAVLKYVADG  151 (182)
T ss_pred             EEcCCCCEEEecCCCCCHHHHHHHHHHHHHH
Confidence            9987766667778888888765544443333

>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate

Probab=90.32  E-value=1.2  Score=36.49  Aligned_cols=41  Identities=10%  Similarity=-0.001  Sum_probs=32.9

Q ss_pred             CCcceEEEEEeCcchhhhHHHHHHHHHhccC-ceEEEEEecC
Q 013976          168 PIKNQLLLFAVSNDSEKLLPVFEEAAKSFKG-KLIFVYVQMD  208 (432)
Q Consensus       168 ~~~~~i~~~~~~~~~~~~~~~~~~~a~~~~~-~i~f~~vd~~  208 (432)
                      ++.+++.|++.|..|....+.+.+++++|++ .+.++.+.++
T Consensus        22 Gk~vvl~fwatwC~C~~e~p~l~~l~~~~~~~~~~vv~v~~~   63 (152)
T cd00340          22 GKVLLIVNVASKCGFTPQYEGLEALYEKYKDRGLVVLGFPCN   63 (152)
T ss_pred             CCEEEEEEEcCCCCchHHHHHHHHHHHHhcCCCEEEEEeccC
Confidence            5677888999993399999999999999975 4777777653

GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.

>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold

Probab=90.02  E-value=0.58  Score=39.47  Aligned_cols=43  Identities=26%  Similarity=0.481  Sum_probs=35.1

Q ss_pred             CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCC
Q 013976          296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT  340 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~  340 (432)
                      +.+..++.|+...|++|..+.+.+..+.+.+.+  ++.+..+...
T Consensus        14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~--~v~~~~~~~~   56 (178)
T cd03019          14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPK--DVKFEKVPVV   56 (178)
T ss_pred             CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCC--CceEEEcCCc
Confidence            457889999999999999999999999888855  5666655543

It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.

>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=89.70  E-value=1.1  Score=34.09  Aligned_cols=53  Identities=9%  Similarity=0.256  Sum_probs=34.2

Q ss_pred             cEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--cc-----CCCCCCceEEE
Q 013976          299 DVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HR-----AKSDGFPTILF  357 (432)
Q Consensus       299 ~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~-----~~i~~~P~i~~  357 (432)
                      .-+|.|..+||..|+.+...|.+    +..  ...+..+|-..+..  ++     -.-.++|.+.+
T Consensus        14 ~~VVifSKs~C~~c~~~k~ll~~----~~v--~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI   73 (104)
T KOG1752|consen   14 NPVVIFSKSSCPYCHRAKELLSD----LGV--NPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI   73 (104)
T ss_pred             CCEEEEECCcCchHHHHHHHHHh----CCC--CCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE
Confidence            34566889999999998777776    333  57777777664433  11     13347777544

>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]

Probab=89.25  E-value=4.7  Score=34.17  Aligned_cols=109  Identities=14%  Similarity=0.055  Sum_probs=72.4

Q ss_pred             HHHHHHhcCCCceeecCCCchhhh---ccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccch
Q 013976          141 IADFVFSNKLPLVTIFTRENAPSV---FESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPV  216 (432)
Q Consensus       141 l~~fi~~~~~p~v~~l~~~~~~~~---~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l  216 (432)
                      +..-...+....|.+++...+..-   .+.+.-+++.+|... +.|.-+...+..+|.+|.. +.|+.+-++..      
T Consensus        81 ~r~~~~k~kfG~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~-iKFVki~at~c------  153 (240)
T KOG3170|consen   81 WRATAEKAKFGEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ-IKFVKIPATTC------  153 (240)
T ss_pred             HHHHHHHhcccceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCc-ceEEecccccc------
Confidence            333344566777888887776542   233333345577777 8999999999999999998 88888876652      


Q ss_pred             hhhhCCCCCCCcEEEEEeCCCCc--ee---cCCC-CCCHHHHHHHHHH
Q 013976          217 SEYFGITGEAPKVLAYTGNDDAK--KH---ILDG-ELTLDKIKTFGED  258 (432)
Q Consensus       217 ~~~~~i~~~~~P~i~i~~~~~~~--~y---~~~~-~~~~~~i~~fi~~  258 (432)
                      +..|-  ...+|+++++..+..+  ..   .+.| ..+.+++..|+-+
T Consensus       154 IpNYP--e~nlPTl~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~q  199 (240)
T KOG3170|consen  154 IPNYP--ESNLPTLLVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQ  199 (240)
T ss_pred             cCCCc--ccCCCeEEEeecchHHhheehhhhhcCCcCCHHHHHHHHHh
Confidence            12221  2356999988776522  11   2233 4688899888877

>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides

Probab=88.24  E-value=6.8  Score=29.16  Aligned_cols=74  Identities=9%  Similarity=0.047  Sum_probs=50.5

Q ss_pred             CCcE-EEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCcccccCCCCCCceEEEEeCCCcccCceeccCCCC
Q 013976          297 SKDV-LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRT  375 (432)
Q Consensus       297 ~~~~-lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~~~~~i~~~P~i~~~~~g~~~~~~~~y~g~~~  375 (432)
                      .+++ ++.|..+. ..|..+...++++|..=.   ++.+-..+...         ..|++++..+|..  .-++|.|-..
T Consensus        18 ~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lSd---kI~~~~~~~~~---------~~P~~~i~~~~~~--~gIrF~GiP~   82 (94)
T cd02974          18 ENPVELVASLDDS-EKSAELLELLEEIASLSD---KITLEEDNDDE---------RKPSFSINRPGED--TGIRFAGIPM   82 (94)
T ss_pred             CCCEEEEEEeCCC-cchHHHHHHHHHHHHhCC---ceEEEEecCCC---------CCCEEEEecCCCc--ccEEEEecCC
Confidence            4555 44555544 899999888888876543   45554433211         4799999987743  3579999888


Q ss_pred             HHHHHHHHHh
Q 013976          376 VVALYKFLKK  385 (432)
Q Consensus       376 ~~~l~~fi~~  385 (432)
                      -..+.+||..
T Consensus        83 GhEf~Slila   92 (94)
T cd02974          83 GHEFTSLVLA   92 (94)
T ss_pred             chhHHHHHHH
Confidence            8888888754

AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-

>PRK11200 grxA glutaredoxin 1; Provisional

Probab=86.96  E-value=4.4  Score=29.32  Aligned_cols=79  Identities=10%  Similarity=0.093  Sum_probs=50.5

Q ss_pred             eEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCccc-ccchhhhhCCCCCCCcEEEEEeCCCCceecCCCCCCH
Q 013976          172 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDV-GKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTL  249 (432)
Q Consensus       172 ~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~-~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~~~~  249 (432)
                      +.+|..++ +.|......+++++.++.+ +.+..+|...... ...+....|......|++++-    ++..     -..
T Consensus         3 v~iy~~~~C~~C~~a~~~L~~l~~~~~~-i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi~----g~~i-----gg~   72 (85)
T PRK11200          3 VVIFGRPGCPYCVRAKELAEKLSEERDD-FDYRYVDIHAEGISKADLEKTVGKPVETVPQIFVD----QKHI-----GGC   72 (85)
T ss_pred             EEEEeCCCChhHHHHHHHHHhhcccccC-CcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEEC----CEEE-----cCH
Confidence            44556667 9999999999999987744 8888888876310 123444445322345998652    2221     256


Q ss_pred             HHHHHHHHHHh
Q 013976          250 DKIKTFGEDFL  260 (432)
Q Consensus       250 ~~i~~fi~~~~  260 (432)
                      ++|.++++..+
T Consensus        73 ~~~~~~~~~~~   83 (85)
T PRK11200         73 TDFEAYVKENL   83 (85)
T ss_pred             HHHHHHHHHhc
Confidence            77777777654

>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A

Probab=86.49  E-value=1.5  Score=34.85  Aligned_cols=62  Identities=16%  Similarity=0.262  Sum_probs=37.2

Q ss_pred             ceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCC-CCCCCcEEEEEeCC
Q 013976          171 NQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGI-TGEAPKVLAYTGND  236 (432)
Q Consensus       171 ~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i-~~~~~P~i~i~~~~  236 (432)
                      .++++..+| ++|....|.+.++|+...+ +.+-++.-+.   +.++++.|-- .....|++++++.+
T Consensus        44 ~ilvi~e~WCgD~~~~vP~l~kiae~~p~-i~~~~i~rd~---~~el~~~~lt~g~~~IP~~I~~d~~  107 (129)
T PF14595_consen   44 NILVITETWCGDCARNVPVLAKIAEANPN-IEVRIILRDE---NKELMDQYLTNGGRSIPTFIFLDKD  107 (129)
T ss_dssp             EEEEE--TT-HHHHHHHHHHHHHHHH-TT-EEEEEE-HHH---HHHHTTTTTT-SS--SSEEEEE-TT
T ss_pred             EEEEEECCCchhHHHHHHHHHHHHHhCCC-CeEEEEEecC---ChhHHHHHHhCCCeecCEEEEEcCC
Confidence            356666788 9999999999999998643 4544444433   3355544422 22245999998765

>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs

Probab=86.36  E-value=3.2  Score=33.61  Aligned_cols=42  Identities=7%  Similarity=0.084  Sum_probs=32.4

Q ss_pred             CcceEEEE-EeC-cchhhhHHHHHHHHHhccC-ceEEEEEecCCc
Q 013976          169 IKNQLLLF-AVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNE  210 (432)
Q Consensus       169 ~~~~i~~~-~~~-~~~~~~~~~~~~~a~~~~~-~i~f~~vd~~~~  210 (432)
                      ++.+++|| +.| +.|+...+.+.++..++.+ .+.++.|..+..
T Consensus        24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~   68 (149)
T cd02970          24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESP   68 (149)
T ss_pred             CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCH
Confidence            45566665 678 9999999999999999964 477777776653

Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.

>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long

Probab=86.21  E-value=1.7  Score=33.19  Aligned_cols=78  Identities=15%  Similarity=0.298  Sum_probs=55.3

Q ss_pred             eeecCCCchhhhccCCCcceEEEEEeC----cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCc
Q 013976          153 VTIFTRENAPSVFESPIKNQLLLFAVS----NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPK  228 (432)
Q Consensus       153 v~~l~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P  228 (432)
                      +..++.++++.+...+ ...++|+..+    +.+....-.+-++.+.+.+.+..+.++...   ...+...||+...  |
T Consensus        11 ~~~vd~~~ld~~l~~~-~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~---e~~L~~r~gv~~~--P   84 (107)
T PF07449_consen   11 WPRVDADTLDAFLAAP-GDAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAA---ERALAARFGVRRW--P   84 (107)
T ss_dssp             EEEE-CCCHHHHHHCC-SCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHH---HHHHHHHHT-TSS--S
T ss_pred             CeeechhhHHHHHhCC-CcEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEECchh---HHHHHHHhCCccC--C
Confidence            5566788888877664 4456666544    234444557888999999999888888544   4588999999988  9


Q ss_pred             EEEEEeCC
Q 013976          229 VLAYTGND  236 (432)
Q Consensus       229 ~i~i~~~~  236 (432)
                      +++++..+
T Consensus        85 aLvf~R~g   92 (107)
T PF07449_consen   85 ALVFFRDG   92 (107)
T ss_dssp             EEEEEETT
T ss_pred             eEEEEECC
Confidence            99999765

This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.

>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

Probab=86.12  E-value=3.4  Score=33.05  Aligned_cols=41  Identities=17%  Similarity=0.149  Sum_probs=28.2

Q ss_pred             CCcceEEEEE-eC-cchhhhHHHHHHHHHhccC-ceEEEEEecC
Q 013976          168 PIKNQLLLFA-VS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMD  208 (432)
Q Consensus       168 ~~~~~i~~~~-~~-~~~~~~~~~~~~~a~~~~~-~i~f~~vd~~  208 (432)
                      +++.++.||. .| +.|....+.+.++..++.+ .+.++.+..+
T Consensus        23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d   66 (140)
T cd03017          23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPD   66 (140)
T ss_pred             CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence            4556666664 55 7799999999998888864 3555555443

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w

>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx)

Probab=86.05  E-value=1.8  Score=35.00  Aligned_cols=41  Identities=10%  Similarity=0.100  Sum_probs=33.3

Q ss_pred             CCcceEEEEEeC--cchhhhHHHHHHHHHhccCceEEEEEecCC
Q 013976          168 PIKNQLLLFAVS--NDSEKLLPVFEEAAKSFKGKLIFVYVQMDN  209 (432)
Q Consensus       168 ~~~~~i~~~~~~--~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~  209 (432)
                      +++.++.||..|  +.|....+.+.++..++.+ +.|+.|..+.
T Consensus        26 gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~-~~vi~Is~d~   68 (143)
T cd03014          26 GKVKVISVFPSIDTPVCATQTKRFNKEAAKLDN-TVVLTISADL   68 (143)
T ss_pred             CCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCC-CEEEEEECCC
Confidence            556777788877  6799999999999999874 7888887764

Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based

>KOG2640 consensus Thioredoxin [Function unknown]

Probab=85.27  E-value=0.47  Score=42.91  Aligned_cols=85  Identities=18%  Similarity=0.307  Sum_probs=65.0

Q ss_pred             CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCcc---cccCCCCCCceEEEEeCCCcccCceeccCC
Q 013976          297 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE---HHRAKSDGFPTILFFPAGNKSFDPINVDVD  373 (432)
Q Consensus       297 ~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~---~~~~~i~~~P~i~~~~~g~~~~~~~~y~g~  373 (432)
                      ..++-+.||+.||+..+..+|.++-....+..   +....++-..+.   ...+++.+.|++.+....-    +..|.|.
T Consensus        76 ~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~---i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~t~----~~~~~~~  148 (319)
T KOG2640|consen   76 NDYVSLLFYASWCPFSRAVRPEFDVRSSLFSS---IQHFAVEESQALPSVFSSYGIHSEPSNLMLNQTC----PASYRGE  148 (319)
T ss_pred             CCcccccchhcccCcccccCcccchhhhhccc---cccccHHHHhhcccchhccccccCCcceeecccc----chhhccc
Confidence            46788999999999999999999888888874   222222211111   1578999999999987654    3489999


Q ss_pred             CCHHHHHHHHHhcCC
Q 013976          374 RTVVALYKFLKKNAS  388 (432)
Q Consensus       374 ~~~~~l~~fi~~~~~  388 (432)
                      ++..+|.+|..+.+.
T Consensus       149 r~l~sLv~fy~~i~~  163 (319)
T KOG2640|consen  149 RDLASLVNFYTEITP  163 (319)
T ss_pred             ccHHHHHHHHHhhcc
Confidence            999999999999886

>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed

Probab=85.20  E-value=5.4  Score=32.63  Aligned_cols=42  Identities=5%  Similarity=0.086  Sum_probs=28.8

Q ss_pred             CCCcceEEEEEeC--cchhhhHHHHHHHHHhccC-ceEEEEEecC
Q 013976          167 SPIKNQLLLFAVS--NDSEKLLPVFEEAAKSFKG-KLIFVYVQMD  208 (432)
Q Consensus       167 ~~~~~~i~~~~~~--~~~~~~~~~~~~~a~~~~~-~i~f~~vd~~  208 (432)
                      .+++.++.||..+  +.|....+.+.++++++.+ .+.++.|..+
T Consensus        29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d   73 (154)
T PRK09437         29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTD   73 (154)
T ss_pred             CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence            3445666676654  6799888888888888864 3666666543

>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

Probab=84.82  E-value=1.9  Score=35.16  Aligned_cols=36  Identities=6%  Similarity=0.135  Sum_probs=28.4

Q ss_pred             EEEEeCC------CChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc
Q 013976          301 LLEIYAP------WCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH  344 (432)
Q Consensus       301 lv~f~~~------~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~  344 (432)
                      +|+|+++      +|++|..++.+|+.+        ++.+-.+|++....
T Consensus         2 VvlYttsl~giR~t~~~C~~ak~iL~~~--------~V~~~e~DVs~~~~   43 (147)
T cd03031           2 VVLYTTSLRGVRKTFEDCNNVRAILESF--------RVKFDERDVSMDSG   43 (147)
T ss_pred             EEEEEcCCcCCCCcChhHHHHHHHHHHC--------CCcEEEEECCCCHH
Confidence            5677777      899999998888776        57788889876543

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.

>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626

Probab=84.76  E-value=4.1  Score=34.59  Aligned_cols=85  Identities=12%  Similarity=0.087  Sum_probs=54.4

Q ss_pred             CCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEE------EEEecCCcc-----c---------------------cc
Q 013976          168 PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIF------VYVQMDNED-----V---------------------GK  214 (432)
Q Consensus       168 ~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f------~~vd~~~~~-----~---------------------~~  214 (432)
                      ++..+|-+++.| ..|+...|.+..++.+-   +.+      ..||.++..     |                     ..
T Consensus        59 GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~---~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g  135 (184)
T TIGR01626        59 GKVRVVHHIAGRTSAKEXNASLIDAIKAAK---FPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKG  135 (184)
T ss_pred             CCEEEEEEEecCCChhhccchHHHHHHHcC---CCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcc
Confidence            666788899999 88999888888886541   222      333333210     0                     11


Q ss_pred             chhhhhCCCCCCCcEEEEEeCCCCceecCCCCCCHHHHHHHH
Q 013976          215 PVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFG  256 (432)
Q Consensus       215 ~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi  256 (432)
                      .+...+|+.+. ++++++++.++...+...|.++.+.+.+++
T Consensus       136 ~v~~~~gv~~~-P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~  176 (184)
T TIGR01626       136 AVKNAWQLNSE-DSAIIVLDKTGKVKFVKEGALSDSDIQTVI  176 (184)
T ss_pred             hHHHhcCCCCC-CceEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence            23456777665 345367777666677788999998888743

This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.

>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]

Probab=84.69  E-value=3  Score=34.10  Aligned_cols=43  Identities=16%  Similarity=0.225  Sum_probs=29.9

Q ss_pred             CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCc-----eEEEEEecCC
Q 013976          167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-----LIFVYVQMDN  209 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~-----i~f~~vd~~~  209 (432)
                      .++.+.++|-+.| ++|+.+.+.+.++....+..     |.|+.-|-+.
T Consensus        32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~   80 (157)
T KOG2501|consen   32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDE   80 (157)
T ss_pred             CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCH
Confidence            3444555666788 99999999988888888765     4555544443

>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1

Probab=84.48  E-value=13  Score=32.82  Aligned_cols=86  Identities=17%  Similarity=0.239  Sum_probs=55.5

Q ss_pred             CCHHHHHHHHHHHhcCCcCccccCCCCCCCCCCceEEEecccchhhh--hcCCCcEEEEEeCCCChhhhhhHHHHHHHHH
Q 013976          247 LTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIV--LDESKDVLLEIYAPWCGHCQAFEPTYNKLAK  324 (432)
Q Consensus       247 ~~~~~i~~fi~~~~~g~l~~~~~se~~p~~~~~~v~~l~~~~~~~~~--~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~  324 (432)
                      +|.+.+..-....+..-.+......+.|   +..|..+++.+....+  ...++|.+|.|-+=.|++-..-...|+++++
T Consensus        53 fT~~~lk~vw~~~~ldl~~~a~~G~~AP---ns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~  129 (237)
T PF00837_consen   53 FTLESLKAVWKVMWLDLFKEAKLGGPAP---NSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVE  129 (237)
T ss_pred             hhHHHHHHHHHHHHHHcccceeCCCCCC---CCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHH
Confidence            4555544433333333223333333444   5678889987743333  3567999999999889998888899999999


Q ss_pred             HhcCCCCEEEE
Q 013976          325 HLRGVDSIVIA  335 (432)
Q Consensus       325 ~~~~~~~~~~~  335 (432)
                      .|.+.-+..++
T Consensus       130 ~f~d~adFl~V  140 (237)
T PF00837_consen  130 DFSDVADFLIV  140 (237)
T ss_pred             Hhhhhhheehh
Confidence            99874333333

97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process

>TIGR02180 GRX_euk Glutaredoxin

Probab=84.39  E-value=2.5  Score=30.32  Aligned_cols=57  Identities=9%  Similarity=-0.000  Sum_probs=36.5

Q ss_pred             eEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcc--cccchhhhhCCCCCCCcEEEE
Q 013976          172 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED--VGKPVSEYFGITGEAPKVLAY  232 (432)
Q Consensus       172 ~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~--~~~~l~~~~~i~~~~~P~i~i  232 (432)
                      +++|+.+| +.|+.+.+.+.++.  ..+.+.+..+|.....  ....+.+..|+...  |++.+
T Consensus         1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~v--P~v~i   60 (84)
T TIGR02180         1 VVVFSKSYCPYCKKAKEILAKLN--VKPAYEVVELDQLSNGSEIQDYLEEITGQRTV--PNIFI   60 (84)
T ss_pred             CEEEECCCChhHHHHHHHHHHcC--CCCCCEEEEeeCCCChHHHHHHHHHHhCCCCC--CeEEE
Confidence            35778888 99999999998877  3344666666654321  01124455576655  99854

This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.

>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC

Probab=84.28  E-value=0.75  Score=35.54  Aligned_cols=79  Identities=14%  Similarity=0.251  Sum_probs=48.5

Q ss_pred             EEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccccc------CCCCCCceEEEEeCCCcccCceeccC---
Q 013976          302 LEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR------AKSDGFPTILFFPAGNKSFDPINVDV---  372 (432)
Q Consensus       302 v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~~~------~~i~~~P~i~~~~~g~~~~~~~~y~g---  372 (432)
                      .+|+.++|+.|+.....|++-        ++.|-.+|+..+....      ....+.|..-++.......+.....+   
T Consensus         2 ~iY~~~~C~~c~ka~~~L~~~--------~i~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~   73 (111)
T cd03036           2 KFYEYPKCSTCRKAKKWLDEH--------GVDYTAIDIVEEPPSKEELKKWLEKSGLPLKKFFNTSGKSYRELGLKDKLP   73 (111)
T ss_pred             EEEECCCCHHHHHHHHHHHHc--------CCceEEecccCCcccHHHHHHHHHHcCCCHHHHHhcCCchHHhCCcccccc
Confidence            578999999999987666663        5777778877666521      23334565555543332211111211   


Q ss_pred             CCCHHHHHHHHHhcCC
Q 013976          373 DRTVVALYKFLKKNAS  388 (432)
Q Consensus       373 ~~~~~~l~~fi~~~~~  388 (432)
                      ..+.+.++++|.++..
T Consensus        74 ~~s~~e~~~~l~~~p~   89 (111)
T cd03036          74 SLSEEEALELLSSDGM   89 (111)
T ss_pred             cCCHHHHHHHHHhCcC
Confidence            3467888888888765

Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.

>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx

Probab=84.14  E-value=1.2  Score=33.99  Aligned_cols=81  Identities=7%  Similarity=0.073  Sum_probs=47.7

Q ss_pred             EEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCcccc------cCCCCCCceEEEEeCCCcccCceec--cC
Q 013976          301 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHH------RAKSDGFPTILFFPAGNKSFDPINV--DV  372 (432)
Q Consensus       301 lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~~------~~~i~~~P~i~~~~~g~~~~~~~~y--~g  372 (432)
                      +.+|+.++|+.|+.....+++.        ++.+-.+|+.++...      -..-.+.+.--++.......+-..-  ..
T Consensus         1 i~iY~~~~C~~c~ka~~~L~~~--------~i~~~~idi~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~l~~~~~~   72 (105)
T cd02977           1 ITIYGNPNCSTSRKALAWLEEH--------GIEYEFIDYLKEPPTKEELKELLAKLGLGVEDLFNTRGTPYRKLGLADKD   72 (105)
T ss_pred             CEEEECCCCHHHHHHHHHHHHc--------CCCcEEEeeccCCCCHHHHHHHHHhcCCCHHHHHhcCCchHHHcCCcccc
Confidence            3579999999999987766664        566777777665441      1122233333344322111011111  23


Q ss_pred             CCCHHHHHHHHHhcCCC
Q 013976          373 DRTVVALYKFLKKNASI  389 (432)
Q Consensus       373 ~~~~~~l~~fi~~~~~~  389 (432)
                      ..+.+++.++|.++-..
T Consensus        73 ~ls~~e~~~~l~~~p~L   89 (105)
T cd02977          73 ELSDEEALELMAEHPKL   89 (105)
T ss_pred             CCCHHHHHHHHHhCcCe
Confidence            57889999999888764

ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.

>KOG3425 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.79  E-value=5.1  Score=30.94  Aligned_cols=69  Identities=23%  Similarity=0.117  Sum_probs=47.9

Q ss_pred             cCCCcceEEEEE--------eC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCC---CCcEEEEE
Q 013976          166 ESPIKNQLLLFA--------VS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGE---APKVLAYT  233 (432)
Q Consensus       166 ~~~~~~~i~~~~--------~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~---~~P~i~i~  233 (432)
                      .+++...++|+.        +| ++|-...+.+.++-+.....+.|+.+++.+-.+.+.....|.....   ..|+++=+
T Consensus        23 ~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlrw  102 (128)
T KOG3425|consen   23 ENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLRW  102 (128)
T ss_pred             hCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCceeecceeeEE
Confidence            445555555554        45 7899999999999998888899999999875544454555554433   34777655


Q ss_pred             e
Q 013976          234 G  234 (432)
Q Consensus       234 ~  234 (432)
                      .
T Consensus       103 ~  103 (128)
T KOG3425|consen  103 K  103 (128)
T ss_pred             c
Confidence            4

>PRK10954 periplasmic protein disulfide isomerase I; Provisional

Probab=83.71  E-value=1.6  Score=38.04  Aligned_cols=41  Identities=27%  Similarity=0.582  Sum_probs=32.2

Q ss_pred             CCcEEEEEeCCCChhhhhhHHHH---HHHHHHhcCCCCEEEEEEeC
Q 013976          297 SKDVLLEIYAPWCGHCQAFEPTY---NKLAKHLRGVDSIVIAKMDG  339 (432)
Q Consensus       297 ~~~~lv~f~~~~c~~c~~~~~~~---~~la~~~~~~~~~~~~~id~  339 (432)
                      +++.+|.|+.-.|++|..+.+.+   ..+.+.+.+  ++.+..+.+
T Consensus        37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~--~v~~~~~~~   80 (207)
T PRK10954         37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPE--GTKMTKYHV   80 (207)
T ss_pred             CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCC--CCeEEEecc
Confidence            45679999999999999999866   777778876  566666554

>TIGR02200 GlrX_actino Glutaredoxin-like protein

Probab=83.54  E-value=3.3  Score=28.99  Aligned_cols=71  Identities=6%  Similarity=0.035  Sum_probs=39.5

Q ss_pred             eEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhh--CCCCCCCcEEEEEeCCCCceecCCCCCC
Q 013976          172 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYF--GITGEAPKVLAYTGNDDAKKHILDGELT  248 (432)
Q Consensus       172 ~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~--~i~~~~~P~i~i~~~~~~~~y~~~~~~~  248 (432)
                      +.+|+++| +.|+.+.+.+.+++..      +..+|.+........+...  +...  .|+++ ++++  ..   -...+
T Consensus         2 v~ly~~~~C~~C~~~~~~L~~~~~~------~~~idi~~~~~~~~~~~~~~~~~~~--vP~i~-~~~g--~~---l~~~~   67 (77)
T TIGR02200         2 ITVYGTTWCGYCAQLMRTLDKLGAA------YEWVDIEEDEGAADRVVSVNNGNMT--VPTVK-FADG--SF---LTNPS   67 (77)
T ss_pred             EEEEECCCChhHHHHHHHHHHcCCc------eEEEeCcCCHhHHHHHHHHhCCCce--eCEEE-ECCC--eE---ecCCC
Confidence            46778888 9999999888776443      4467776532111112222  5544  49984 4333  11   12345


Q ss_pred             HHHHHHHH
Q 013976          249 LDKIKTFG  256 (432)
Q Consensus       249 ~~~i~~fi  256 (432)
                      ...+.+.+
T Consensus        68 ~~~~~~~l   75 (77)
T TIGR02200        68 AAQVKAKL   75 (77)
T ss_pred             HHHHHHHh
Confidence            55665544

This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.

>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional

Probab=83.35  E-value=2.6  Score=35.23  Aligned_cols=55  Identities=13%  Similarity=0.141  Sum_probs=39.2

Q ss_pred             CCcceEEEEEeC--cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCC
Q 013976          168 PIKNQLLLFAVS--NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGIT  223 (432)
Q Consensus       168 ~~~~~i~~~~~~--~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~  223 (432)
                      +++.++.||..|  +.|...++.+.++++++. .+.++.+.++.......+++.+|+.
T Consensus        44 Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~-~~~vv~vs~D~~~~~~~f~~~~~~~  100 (167)
T PRK00522         44 GKRKVLNIFPSIDTGVCATSVRKFNQEAAELD-NTVVLCISADLPFAQKRFCGAEGLE  100 (167)
T ss_pred             CCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC-CcEEEEEeCCCHHHHHHHHHhCCCC
Confidence            556677888888  679999999999999985 4777777665432134455665553

>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=83.24  E-value=2.6  Score=30.33  Aligned_cols=76  Identities=18%  Similarity=0.286  Sum_probs=49.4

Q ss_pred             EEEEeC--cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCC-CceecCCCCCCHH
Q 013976          174 LLFAVS--NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDD-AKKHILDGELTLD  250 (432)
Q Consensus       174 ~~~~~~--~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~-~~~y~~~~~~~~~  250 (432)
                      .+|...  .=|..+...+.+++....  +.+..+|..+   .+.+...||.   ..|++.+....+ .......+.++.+
T Consensus         3 ~l~~k~~C~LC~~a~~~L~~~~~~~~--~~l~~vDI~~---d~~l~~~Y~~---~IPVl~~~~~~~~~~~~~~~~~~d~~   74 (81)
T PF05768_consen    3 TLYTKPGCHLCDEAKEILEEVAAEFP--FELEEVDIDE---DPELFEKYGY---RIPVLHIDGIRQFKEQEELKWRFDEE   74 (81)
T ss_dssp             EEEE-SSSHHHHHHHHHHHHCCTTST--CEEEEEETTT---THHHHHHSCT---STSEEEETT-GGGCTSEEEESSB-HH
T ss_pred             EEEcCCCCChHHHHHHHHHHHHhhcC--ceEEEEECCC---CHHHHHHhcC---CCCEEEEcCcccccccceeCCCCCHH
Confidence            445444  558888877777655544  7888999997   5578899986   349987654221 1123345678999


Q ss_pred             HHHHHHH
Q 013976          251 KIKTFGE  257 (432)
Q Consensus       251 ~i~~fi~  257 (432)
                      .|.+|++
T Consensus        75 ~L~~~L~   81 (81)
T PF05768_consen   75 QLRAWLE   81 (81)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhC
Confidence            9999875

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.

>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional

Probab=83.19  E-value=8.8  Score=32.78  Aligned_cols=93  Identities=9%  Similarity=-0.072  Sum_probs=57.8

Q ss_pred             CCcceEEEE-EeC-cchhhhHHHHHHHHHhccC-ceEEEEEecCCcc----------------------cccchhhhhCC
Q 013976          168 PIKNQLLLF-AVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNED----------------------VGKPVSEYFGI  222 (432)
Q Consensus       168 ~~~~~i~~~-~~~-~~~~~~~~~~~~~a~~~~~-~i~f~~vd~~~~~----------------------~~~~l~~~~~i  222 (432)
                      +++.++.|| ..| +.|....+.|.+.+.+|.+ .+.++.|..+...                      ....+++.||+
T Consensus        31 Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~ygv  110 (187)
T PRK10382         31 GRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDN  110 (187)
T ss_pred             CCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcCC
Confidence            444455556 566 8899999999999999863 2333333332210                      02466788887


Q ss_pred             C----CCCCcEEEEEeCCCCceecC----CCCCCHHHHHHHHHHHh
Q 013976          223 T----GEAPKVLAYTGNDDAKKHIL----DGELTLDKIKTFGEDFL  260 (432)
Q Consensus       223 ~----~~~~P~i~i~~~~~~~~y~~----~~~~~~~~i~~fi~~~~  260 (432)
                      .    +...|+.++++.++...|.+    ....+.+++.+.++.+-
T Consensus       111 ~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~alq  156 (187)
T PRK10382        111 MREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQ  156 (187)
T ss_pred             CcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhhh
Confidence            3    22238888887666443332    33468889998887754

>PRK10606 btuE putative glutathione peroxidase; Provisional

Probab=83.11  E-value=20  Score=30.54  Aligned_cols=40  Identities=8%  Similarity=0.023  Sum_probs=31.6

Q ss_pred             CCcceEEEEEeC-cchhhhHHHHHHHHHhccC-ceEEEEEecC
Q 013976          168 PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMD  208 (432)
Q Consensus       168 ~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~-~i~f~~vd~~  208 (432)
                      ++..+|.+++.| +.|. ..+.|.++.++|++ .+.++.+.|+
T Consensus        25 GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~n   66 (183)
T PRK10606         25 GNVLLIVNVASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCN   66 (183)
T ss_pred             CCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeecc
Confidence            567788889999 6665 47789999999985 3888888775

>TIGR03137 AhpC peroxiredoxin

Probab=82.02  E-value=12  Score=31.94  Aligned_cols=91  Identities=10%  Similarity=-0.011  Sum_probs=54.3

Q ss_pred             CCcceEEEE-EeC-cchhhhHHHHHHHHHhccC-ceEEEEEecCCc--------------c--------cccchhhhhCC
Q 013976          168 PIKNQLLLF-AVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNE--------------D--------VGKPVSEYFGI  222 (432)
Q Consensus       168 ~~~~~i~~~-~~~-~~~~~~~~~~~~~a~~~~~-~i~f~~vd~~~~--------------~--------~~~~l~~~~~i  222 (432)
                      ++++++.|| +.| +.|...++.|.++..++.+ .+.++.|.++..              .        ....+++.||+
T Consensus        31 Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~gv  110 (187)
T TIGR03137        31 GKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFGV  110 (187)
T ss_pred             CCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhCC
Confidence            445556666 677 8999999999999998863 233333332210              0        02355677887


Q ss_pred             CCC----CCcEEEEEeCCCCceecC----CCCCCHHHHHHHHHH
Q 013976          223 TGE----APKVLAYTGNDDAKKHIL----DGELTLDKIKTFGED  258 (432)
Q Consensus       223 ~~~----~~P~i~i~~~~~~~~y~~----~~~~~~~~i~~fi~~  258 (432)
                      ...    ..|+.++++.++...+..    ....+.+++.+.|+.
T Consensus       111 ~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~  154 (187)
T TIGR03137       111 LIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKA  154 (187)
T ss_pred             cccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence            521    347777776655333332    123477777777754

This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.

>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE

Probab=80.91  E-value=6.5  Score=31.82  Aligned_cols=41  Identities=15%  Similarity=0.151  Sum_probs=30.4

Q ss_pred             CcceEEEE-EeC-cchhhhHHHHHHHHHhccC-ceEEEEEecCC
Q 013976          169 IKNQLLLF-AVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDN  209 (432)
Q Consensus       169 ~~~~i~~~-~~~-~~~~~~~~~~~~~a~~~~~-~i~f~~vd~~~  209 (432)
                      +..++.|| +.| +.|....+.+.++++++.+ .+.++.|..+.
T Consensus        29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~   72 (149)
T cd03018          29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDS   72 (149)
T ss_pred             CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCC
Confidence            45556666 677 8999999999999999974 46666665543

AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	432
3uem_A	361	Crystal Structure Of Human Pdi Bb'a' Domains Length		5e-52
3f8u_A	481	TapasinERP57 HETERODIMER Length = 481		2e-38
3f8u_A	481	TapasinERP57 HETERODIMER Length = 481		1e-08
2dmm_A	142	The Solution Structure Of The Second Thioredoxin Do		2e-29
2b5e_A	504	Crystal Structure Of Yeast Protein Disulfide Isomer		3e-25
2b5e_A	504	Crystal Structure Of Yeast Protein Disulfide Isomer		3e-07
2dj3_A	133	The Solution Structure Of The Third Thioredoxin Dom		9e-25
2k18_A	228	Solution Structure Of Bb' Domains Of Human Protein		2e-22
2djj_A	121	Solution Structure Of The A' Domain Of Thermophilic		1e-21
1x5c_A	121	The Solution Structure Of The Second Thioredoxin-Li		4e-21
3bj5_A	147	Alternative Conformations Of The X Region Of Human		1e-15
2dj1_A	140	The Solution Structure Of The First Thioredoxin Dom		8e-12
3idv_A	241	Crystal Structure Of The A0a Fragment Of Erp72 Leng		7e-11
3ed3_A	298	Crystal Structure Of The Yeast DithiolDISULFIDE Oxi		2e-10
1x5d_A	133	The Solution Structure Of The Second Thioredoxin-Li		2e-10
1mek_A	120	Human Protein Disulfide Isomerase, Nmr, 40 Structur		1e-09
2diz_A	117	The Solution Structure Of The Third Thioredoxin Dom		2e-09
2dj2_A	120	The Solution Structure Of The Second Thioredoxin Do		2e-09
3uvt_A	111	Crystal Structure Of The Third Catalytic Domain Of		4e-09
3uj1_A	110	Crystal Structure Of The Third Thioredoxin Domain O		5e-09
2alb_A	113	Nmr Structure Of The N-Terminal Domain A Of The Gly		1e-08
2dml_A	130	The Solution Structure Of The First Thioredoxin Dom		1e-07
2yj7_A	106	Crystal Structure Of A Hyperstable Protein From The		3e-07
4f9z_D	227	Crystal Structure Of Human Erp27 Length = 227		4e-07
1fb0_A	105	Crystal Structure Of Thioredoxin M From Spinach Chl		2e-06
1gl8_A	104	Solution Structure Of Thioredoxin M From Spinach, O		4e-06
3q6o_A	244	Oxidoreductase Fragment Of Human Qsox1 Length = 244		6e-06
1dby_A	107	Nmr Structures Of Chloroplast Thioredoxin M Ch2 Fro		8e-06
2fd3_A	108	Crystal Structure Of Thioredoxin Mutant P34h Length		1e-05
3tco_A	109	Crystallographic And Spectroscopic Characterization		4e-05
2bjx_A	110	Protein Disulfide Isomerase Length = 110		4e-05
2puk_C	106	Crystal Srtucture Of The Binary Complex Between Fer		4e-05
2l5l_A	136	Solution Structure Of Thioredoxin From Bacteroides		8e-05
2cvk_A	110	Crystal Structure Of Thermus Thermophilus Thioredox		1e-04
2yzu_A	109	Crystal Structure Of Oxidized Thioredoxin From Ther		1e-04
3ec3_A	250	Crystal Structure Of The Bb Fragment Of Erp72 Lengt		1e-04
1zzy_A	108	Crystal Structure Of Thioredoxin Mutant L7v Length		1e-04
2h71_A	108	Crystal Structure Of Thioredoxin Mutant D47e In Hex		1e-04
2h72_A	108	Crystal Structure Of Thioredoxin Mutant E85d In Hex		1e-04
2tir_A	108	Crystal Structure Analysis Of A Mutant Escherichia		2e-04
3aps_A	122	Crystal Structure Of Trx4 Domain Of Erdj5 Length =		2e-04
2h70_A	108	Crystal Structure Of Thioredoxin Mutant D9e In Hexa		2e-04
2h74_A	108	Crystal Structure Of Thioredoxin Mutant D2e In Hexa		2e-04
2trx_A	108	Crystal Structure Of Thioredoxin From Escherichia C		2e-04
1xob_A	108	Thioredoxin (Reduced Dithio Form), Nmr, 20 Structur		2e-04
3dxb_A	222	Structure Of The Uhm Domain Of Puf60 Fused To Thior		2e-04
2h6y_A	108	Crystal Structure Of Thioredoxin Mutant E48d In Hex		2e-04
2eiq_A	108	Design Of Disulfide-linked Thioredoxin Dimers And M		3e-04
2eio_A	108	Design Of Disulfide-Linked Thioredoxin Dimers And M		3e-04
2h76_A	108	Crystal Structure Of Thioredoxin Mutant D10e In Hex		3e-04
2h6z_A	108	Crystal Structure Of Thioredoxin Mutant E44d In Hex		3e-04
2l4q_A	116	Solution Structures Of Oxidized And Reduced Thiored		3e-04
2h73_A	108	Crystal Structure Of Thioredoxin Mutant D43e In Hex		3e-04
2eir_A	108	Design Of Disulfide-Linked Thioredoxin Dimers And M		3e-04
3t58_A	519	C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTER		4e-04
3dyr_A	111	Crystal Structure Of E. Coli Thioredoxin Mutant I76		4e-04
2i1u_A	121	Mycobacterium Tuberculosis Thioredoxin C Length = 1		4e-04
2h75_A	108	Crystal Structure Of Thioredoxin Mutant D13e In Hex		6e-04
2h8l_A	252	Crystal Structure Of The Bb' Fragment Of Erp57 Leng		7e-04
3p2a_A	148	Crystal Structure Of Thioredoxin 2 From Yersinia Pe		8e-04
1x5e_A	126	The Solution Structure Of The Thioredoxin-Like Doma		8e-04

>pdb|3UEM|A Chain A, Crystal Structure Of Human Pdi Bb'a' Domains Length = 361

Iteration: 1
 Score =  201 bits (512), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 130/353 (36%), Positives = 196/353 (55%), Gaps = 17/353 (4%)
Query: 45  GPGIYNITTLDE---AERVLTSETKVVLGYLNSLVGSESEVLADASRLEDDVNFYQTTNP 101
           GPG    TTL +   AE ++ S    V+G+   +    ++    A+   DD+ F  T+N 
Sbjct: 13  GPGSEFATTLPDGAAAESLVESSEVAVIGFFKDVESDSAKQFLQAAEAIDDIPFGITSNS 72
Query: 102 DVAKIFHLDSKVNRPALVMVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENA 161
           DV   + LD    +  +V+ KK  E  + F +G+  K  + DF+  N+LPLV  FT + A
Sbjct: 73  DVFSKYQLD----KDGVVLFKKFDEGRNNF-EGEVTKENLLDFIKHNQLPLVIEFTEQTA 127
Query: 162 PSVFESPIKNQLLLF---AVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSE 218
           P +F   IK  +LLF   +VS D +  L  F+ AA+SFKGK++F+++  D+ D  + + E
Sbjct: 128 PKIFGGEIKTHILLFLPKSVS-DYDGKLSNFKTAAESFKGKILFIFIDSDHTD-NQRILE 185
Query: 219 YFGITGE-APKVLAYTGNDDAKKHILDGE-LTLDKIKTFGEDFLEGKLKPFFKSDPIPET 276
           +FG+  E  P V   T  ++  K+  + E LT ++I  F   FLEGK+KP   S  +PE 
Sbjct: 186 FFGLKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEGKIKPHLMSQELPED 245
Query: 277 NDGD-VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIA 335
            D   VK++VG NF+++  DE K+V +E YAPWCGHC+   P ++KL +  +  ++IVIA
Sbjct: 246 WDKQPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIA 305
Query: 336 KMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNAS 388
           KMD T NE    K   FPT+ FFPA       I+ + +RT+    KFL+    
Sbjct: 306 KMDSTANEVEAVKVHSFPTLKFFPASADR-TVIDYNGERTLDGFKKFLESGGQ 357

>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER Length = 481

Iteration: 1
 Score =  156 bits (395), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 119/387 (30%), Positives = 196/387 (50%), Gaps = 37/387 (9%)
Query: 32  SKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLN-SLVGSESEVLADASRLE 90
           + D IV+ +KK+ GP    + T +E ++ ++ +   ++G+ + S   + SE L  AS L 
Sbjct: 96  TADGIVSHLKKQAGPASVPLRTEEEFKKFISDKDASIVGFFDDSFSEAHSEFLKAASNLR 155
Query: 91  DDVNFYQTTNPDVAKIFHLDSK---VNRPALVMVKKETEKISYFADGKFDKSTIADFVFS 147
           D+  F  T    +   +  + +   + RP+ +  K E + ++Y  + K     I  F+  
Sbjct: 156 DNYRFAHTNVESLVNEYDDNGEGIILFRPSHLTNKFEDKTVAY-TEQKMTSGKIKKFIQE 214
Query: 148 NKLPLVTIFTRENAPSVFESPIKNQLLLFAVSN-DSEKLLPVFEEAAKSFKGKLIFV--- 203
           N   +    T +N     +  I+ + LL A  + D EK      + +  ++ +++ V   
Sbjct: 215 NIFGICPHMTEDN-----KDLIQGKDLLIAYYDVDYEKNA----KGSNYWRNRVMMVAKK 265
Query: 204 ---------YVQMDNEDVGKPVSEYFGI---TGEAPKVLAYTGNDDAKKHILDGELTLD- 250
                    +     +     +S+ FG+    GE P V   T     +K ++  E + D 
Sbjct: 266 FLDAGHKLNFAVASRKTFSHELSD-FGLESTAGEIPVVAIRTAK--GEKFVMQEEFSRDG 322
Query: 251 -KIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWC 309
             ++ F +D+ +G LK + KS+PIPE+NDG VK+VV  NFDEIV +E+KDVL+E YAPWC
Sbjct: 323 KALERFLQDYFDGNLKRYLKSEPIPESNDGPVKVVVAENFDEIVNNENKDVLIEFYAPWC 382
Query: 310 GHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE-HHRAKSDGFPTILFFPAGNKSFDPI 368
           GHC+  EP Y +L + L    +IVIAKMD T N+     +  GFPTI F PA NK  +P 
Sbjct: 383 GHCKNLEPKYKELGEKLSKDPNIVIAKMDATANDVPSPYEVRGFPTIYFSPA-NKKLNPK 441
Query: 369 NVDVDRTVVALYKFLKKNASIPFKIQK 395
             +  R +     +L++ A+ P  IQ+
Sbjct: 442 KYEGGRELSDFISYLQREATNPPVIQE 468

>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER Length = 481

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 12/123 (9%)
Query: 280 DVKIVVGNNFDEIVLDESKD--VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKM 337
           DV  +  +NF+  + D      +L+E +APWCGH +   P Y   A  L+G+  + +AK+
Sbjct: 2   DVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGI--VPLAKV 59
Query: 338 DGT--TNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKN---ASIPFK 392
           D T  TN  ++    G+PT+  F  G ++      D  RT   +   LKK    AS+P +
Sbjct: 60  DCTANTNTCNKYGVSGYPTLKIFRDGEEAG---AYDGPRTADGIVSHLKKQAGPASVPLR 116
Query: 393 IQK 395
            ++
Sbjct: 117 TEE 119

>pdb|2DMM|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of Human Protein Disulfide-Isomerase A3 Length = 142

Iteration: 1
 Score =  126 bits (317), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 64/130 (49%), Positives = 85/130 (65%), Gaps = 2/130 (1%)
Query: 260 LEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTY 319
            +G LK + KS+PIPE+NDG VK+VV  NFDEIV +E+KDVL+E YAPWCGHC+  EP Y
Sbjct: 8   FDGNLKRYLKSEPIPESNDGPVKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKY 67
Query: 320 NKLAKHLRGVDSIVIAKMDGTTNE-HHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVA 378
            +L + L    +IVIAKMD T N+     +  GFPTI F PA NK  +P   +  R +  
Sbjct: 68  KELGEKLSKDPNIVIAKMDATANDVPSPYEVRGFPTIYFSPA-NKKLNPKKYEGGRELSD 126
Query: 379 LYKFLKKNAS 388
              +L++ A+
Sbjct: 127 FISYLQREAT 136

>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase Length = 504

Iteration: 1
 Score =  112 bits (281), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 88/280 (31%), Positives = 132/280 (47%), Gaps = 45/280 (16%)
Query: 124 ETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVSNDSE 183
           + E + YF  G+ D S  A +V S  LPL  +F                       ND E
Sbjct: 216 QVEALPYF--GEIDGSVFAQYVESG-LPLGYLFY----------------------NDEE 250
Query: 184 KL---LPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKK 240
           +L    P+F E AK  +G + FV   +D    G+       +  + P    +   +D K 
Sbjct: 251 ELEEYKPLFTELAKKNRGLMNFV--SIDARKFGRHAGN-LNMKEQFPLFAIHDMTEDLKY 307
Query: 241 HI----------LDGELTLDK--IKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNN 288
            +          L  ++ L+   I++  +DFL+G   P  KS  I E  D  V  +VG N
Sbjct: 308 GLPQLSEEAFDELSDKIVLESKAIESLVKDFLKGDASPIVKSQEIFENQDSSVFQLVGKN 367
Query: 289 FDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLA-KHLRGVDSIVIAKMDGTTNEHHRA 347
            DEIV D  KDVL+  YAPWCGHC+   PTY +LA  +      ++IAK+D T N+    
Sbjct: 368 HDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTENDVRGV 427
Query: 348 KSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA 387
             +G+PTI+ +P G KS + +     R++ +L+ F+K+N 
Sbjct: 428 VIEGYPTIVLYPGGKKS-ESVVYQGSRSLDSLFDFIKENG 466

>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase Length = 504

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 63/114 (55%), Gaps = 7/114 (6%)
Query: 278 DGDVKIVVGNNFDEIVLDESKD-VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAK 336
           D  V  +  ++F+E +  +S D VL E +APWCGHC+   P Y K A+ L    +I +A+
Sbjct: 13  DSAVVKLATDSFNEYI--QSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVE-KNITLAQ 69
Query: 337 MDGTTNEHHRAKSD--GFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNAS 388
           +D T N+    + +  GFP++  F   + + + I+ +  RT  A+ +F+ K + 
Sbjct: 70  IDCTENQDLCMEHNIPGFPSLKIFKNSDVN-NSIDYEGPRTAEAIVQFMIKQSQ 122

>pdb|2DJ3|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of Mouse Protein Disulfide-Isomerase A4 Length = 133

Iteration: 1
 Score =  111 bits (277), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 57/129 (44%), Positives = 82/129 (63%), Gaps = 4/129 (3%)
Query: 277 NDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAK 336
           + G VK+VVG  FD IV+D  KDVL+E YAPWCGHC+  EP Y  L K  +G   +VIAK
Sbjct: 5   SSGPVKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAK 64
Query: 337 MDGTTNE--HHRAKSDGFPTILFFPAGNKSFDPINVD-VDRTVVALYKFLKKNASIPFKI 393
           MD T N+  + + K +GFPTI F P+G+K  +PI  +  +R +  L KF+ ++A+   + 
Sbjct: 65  MDATANDITNDQYKVEGFPTIYFAPSGDKK-NPIKFEGGNRDLEHLSKFIDEHATKRSRT 123
Query: 394 QKPTSAPKT 402
           ++  S P +
Sbjct: 124 KEELSGPSS 132

>pdb|2K18|A Chain A, Solution Structure Of Bb' Domains Of Human Protein Disulfide Isomerase Length = 228

Iteration: 1
 Score =  103 bits (256), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/219 (34%), Positives = 119/219 (54%), Gaps = 12/219 (5%)
Query: 57  AERVLTSETKVVLGYLNSLVGSESEVLADASRLEDDVNFYQTTNPDVAKIFHLDSKVNRP 116
           AE ++ S    V+G+   +    ++    A+   DD+ F  T+N DV   + LD    + 
Sbjct: 17  AESLVESSEVAVIGFFKDVESDSAKQFLQAAEAIDDIPFGITSNSDVFSKYQLD----KD 72
Query: 117 ALVMVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLF 176
            +V+ KK  E  + F +G+  K  + DF+  N+LPLV  FT + AP +F   IK  +LLF
Sbjct: 73  GVVLFKKFDEGRNNF-EGEVTKENLLDFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLF 131
Query: 177 ---AVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITG-EAPKVLAY 232
              +VS D +  L  F+ AA+SFKGK++F+++  D+ D  + + E+FG+   E P V   
Sbjct: 132 LPKSVS-DYDGKLSNFKTAAESFKGKILFIFIDSDHTD-NQRILEFFGLKKEECPAVRLI 189
Query: 233 TGNDDAKKHILDG-ELTLDKIKTFGEDFLEGKLKPFFKS 270
           T  ++  K+  +  ELT ++I  F   FLEGK+KP   S
Sbjct: 190 TLEEEMTKYKPESEELTAERITEFCHRFLEGKIKPHLMS 228

>pdb|2DJJ|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal Protein Disulfide Isomerase Length = 121

Iteration: 1
 Score =  100 bits (249), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 53/117 (45%), Positives = 71/117 (60%), Gaps = 5/117 (4%)
Query: 274 PETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV---D 330
           P  ++G V +VV  N++EIVLD++KDVL+E YAPWCGHC+A  P Y +L          D
Sbjct: 2   PLGSEGPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKD 61
Query: 331 SIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA 387
            +VIAK+D T N+    +  GFPTI  +PAG K   P+     RTV  L KF+ +N 
Sbjct: 62  RVVIAKVDATANDVPD-EIQGFPTIKLYPAGAKG-QPVTYSGSRTVEDLIKFIAENG 116

>pdb|1X5C|A Chain A, The Solution Structure Of The Second Thioredoxin-Like Domain Of Human Protein Disulfide-Isomerase Length = 121

Iteration: 1
 Score = 99.0 bits (245), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 47/106 (44%), Positives = 67/106 (63%), Gaps = 1/106 (0%)
Query: 279 GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD 338
           G VK++VG NF+++  DE K+V +E YAPWCGHC+   P ++KL +  +  ++IVIAKMD
Sbjct: 7   GPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMD 66
Query: 339 GTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLK 384
            T NE    K   FPT+ FFPA       I+ + +RT+    KFL+
Sbjct: 67  STANEVEAVKVHSFPTLKFFPASADR-TVIDYNGERTLDGFKKFLE 111

>pdb|3BJ5|A Chain A, Alternative Conformations Of The X Region Of Human Protein Disulphide- Isomerase Modulate Exposure Of The Substrate Binding B' Domain Length = 147

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 77/135 (57%), Gaps = 5/135 (3%)
Query: 148 NKLPLVTIFTRENAPSVFESPIKNQLLLF--AVSNDSEKLLPVFEEAAKSFKGKLIFVYV 205
           N+LPLV  FT + AP +F   IK  +LLF     +D +  L  F+ AA+SFKGK++F ++
Sbjct: 11  NQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFAFI 70
Query: 206 QMDNEDVGKPVSEYFGITG-EAPKVLAYTGNDDAKKHILDG-ELTLDKIKTFGEDFLEGK 263
             D+ D  + + E+FG+   E P V   T  ++  K+  +  ELT ++I  F   FLEGK
Sbjct: 71  DSDHTD-NQRILEFFGLKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEGK 129
Query: 264 LKPFFKSDPIPETND 278
           +KP   S  +PE  D
Sbjct: 130 IKPHLMSQELPEDWD 144

>pdb|2DJ1|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of Mouse Protein Disulfide-Isomerase A4 Length = 140

Iteration: 1
 Score = 68.2 bits (165), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 40/98 (40%), Positives = 53/98 (54%), Gaps = 8/98 (8%)
Query: 281 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVD-SIVIAKMDG 339
           V ++   NFD  V D+   VLLE YAPWCGHC+ F P Y K+A  L+  D  I +AK+D 
Sbjct: 19  VWVLNDGNFDNFVADKDT-VLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDA 77
Query: 340 TTNEHHRAKSD--GFPTILFFPAGNKSFDPINVDVDRT 375
           T+     +K D  G+PTI     G      ++ D  RT
Sbjct: 78  TSASMLASKFDVSGYPTIKILKKGQA----VDYDGSRT 111

>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72 Length = 241

Iteration: 1
 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 52/100 (52%), Gaps = 4/100 (4%)
Query: 266 PFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKH 325
           P    D +    +  V ++   NFD  V D+   VLLE YAPWCGHC+ F P Y K+A  
Sbjct: 2   PLGSEDDLEVKEENGVLVLNDANFDNFVADKDT-VLLEFYAPWCGHCKQFAPEYEKIANI 60
Query: 326 LRGVD-SIVIAKMDGTTNEHHRAKSD--GFPTILFFPAGN 362
           L+  D  I +AK+D T+     ++ D  G+PTI     G 
Sbjct: 61  LKDKDPPIPVAKIDATSASVLASRFDVSGYPTIKILKKGQ 100

>pdb|3ED3|A Chain A, Crystal Structure Of The Yeast DithiolDISULFIDE Oxidoreductase Mpd1p Length = 298

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 9/94 (9%)
Query: 267 FFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHL 326
           F+ SDP        +  +   +FD+ + + +   L+E YAPWCGHC+    T+ K AK L
Sbjct: 12  FYDSDP-------HISELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRL 64
Query: 327 RGVDSIVIAKMDGTTNEHHRAKSD--GFPTILFF 358
            GV  +     D   N+   AK D  GFPT++ F
Sbjct: 65  DGVVQVAAVNCDLNKNKALCAKYDVNGFPTLMVF 98

>pdb|1X5D|A Chain A, The Solution Structure Of The Second Thioredoxin-Like Domain Of Human Protein Disulfide-Isomerase A6 Length = 133

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 52/101 (51%), Gaps = 7/101 (6%)
Query: 279 GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV--DSIVIAK 336
           GDV  +  ++FD+ VLD     ++E YAPWCGHC+  EP +   A  ++      + +A 
Sbjct: 7   GDVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAA 66
Query: 337 MDGTTNE--HHRAKSDGFPTILFFPAGNKSFDPINVDVDRT 375
           +D T N+    R    GFPTI  F  G     P++ D  RT
Sbjct: 67  VDATVNQVLASRYGIRGFPTIKIFQKGES---PVDYDGGRT 104

>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures Length = 120

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/115 (37%), Positives = 60/115 (52%), Gaps = 6/115 (5%)
Query: 274 PETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDS-I 332
           PE  D  V ++  +NF E  L   K +L+E YAPWCGHC+A  P Y K A  L+   S I
Sbjct: 3   PEEED-HVLVLRKSNFAE-ALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEI 60
Query: 333 VIAKMDGT--TNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKK 385
            +AK+D T  ++   +    G+PTI FF  G+ +  P      R    +  +LKK
Sbjct: 61  RLAKVDATEESDLAQQYGVRGYPTIKFFRNGDTA-SPKEYTAGREADDIVNWLKK 114

>pdb|2DIZ|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of Human Thioredoxin Domain-Containing Protein 5 Length = 117

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 277 NDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLA-KHLRGVDSIVIA 335
           + G V  +  NNFD+ + +      ++ YAPWCGHC+   PT+ +L+ K   G+  + IA
Sbjct: 5   SSGTVLALTENNFDDTIAEGI--TFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIA 62
Query: 336 KMDGTTNEHHRAKSD--GFPTILFFPAGNK 363
           ++D T   +  +K    G+PT+L F  G K
Sbjct: 63  EVDCTAERNICSKYSVRGYPTLLLFRGGKK 92

>pdb|2DJ2|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of Mouse Protein Disulfide-Isomerase A4 Length = 120

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 49/83 (59%), Gaps = 5/83 (6%)
Query: 287 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHL-RGVDSIVIAKMDGT--TNE 343
           +NFD++V + +  +L+E YAPWCGHC+   P Y K AK L +    I +AK+D T  T+ 
Sbjct: 15  DNFDDVV-NNADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATEQTDL 73
Query: 344 HHRAKSDGFPTILFFPAGNKSFD 366
             R    G+PT+  F  G + FD
Sbjct: 74  AKRFDVSGYPTLKIFRKG-RPFD 95

>pdb|3UVT|A Chain A, Crystal Structure Of The Third Catalytic Domain Of Erp46 Length = 111

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 5/80 (6%)
Query: 287 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLA-KHLRGVDSIVIAKMDGTTNEHH 345
           NNFD+ + +      ++ YAPWCGHC+   PT+ +L+ K   G+  + IA++D T   + 
Sbjct: 13  NNFDDTIAEGI--TFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNI 70
Query: 346 RAKSD--GFPTILFFPAGNK 363
            +K    G+PT+L F  G K
Sbjct: 71  CSKYSVRGYPTLLLFRGGKK 90

>pdb|3UJ1|A Chain A, Crystal Structure Of The Third Thioredoxin Domain Of Human Erp46 Length = 110

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 56/104 (53%), Gaps = 8/104 (7%)
Query: 287 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLA-KHLRGVDSIVIAKMDGTTNEHH 345
           NNFD+ + +      ++ YAPWCGHC+   PT+ +L+ K   G+  + IA++D T   + 
Sbjct: 8   NNFDDTIAE--GITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNI 65
Query: 346 RAKSD--GFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA 387
            +K    G+PT+L F  G K  +       R + +L++F+   A
Sbjct: 66  CSKYSVRGYPTLLLFRGGKKVSEHSG---GRDLDSLHRFVLSQA 106

>pdb|2ALB|A Chain A, Nmr Structure Of The N-Terminal Domain A Of The Glycoprotein Chaperone Erp57 Length = 113

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 57/112 (50%), Gaps = 9/112 (8%)
Query: 280 DVKIVVGNNFDEIVLDESKD--VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKM 337
           DV  +  +NF+  + D      +L+E +APWCGHC+   P Y   A  L+G+  + +AK+
Sbjct: 2   DVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHCKRLAPEYEAAATRLKGI--VPLAKV 59
Query: 338 DGT--TNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA 387
           D T  TN  ++    G+PT+  F  G ++      D  RT   +   LKK A
Sbjct: 60  DCTANTNTCNKYGVSGYPTLKIFRDGEEAG---AYDGPRTADGIVSHLKKQA 108

>pdb|2DML|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of Mouse Protein Disulfide-Isomerase A6 Length = 130

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/92 (34%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 276 TNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIA 335
           ++  DV  +  +NF+  V+      L+E YAPWCGHCQ   P + K A  L+ V  +   
Sbjct: 14  SSSDDVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGAV 73
Query: 336 KMDGTTNEHHRAKSDGFPTILFFPAG-NKSFD 366
             D   +   +    GFPTI  F A  NK  D
Sbjct: 74  NADKHQSLGGQYGVQGFPTIKIFGANKNKPED 105

>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The Precambrian Period Length = 106

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 38/79 (48%)
Query: 284 VVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE 343
           V   NF++ VL   K VL++ +APWCG C+   P   +LAK   G   +V   +D   N 
Sbjct: 6   VTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENPNT 65
Query: 344 HHRAKSDGFPTILFFPAGN 362
             +      PT+L F  G 
Sbjct: 66  AAQYGIRSIPTLLLFKNGQ 84

>pdb|4F9Z|D Chain D, Crystal Structure Of Human Erp27 Length = 227

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 67/129 (51%), Gaps = 2/129 (1%)
Query: 137 DKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFA--VSNDSEKLLPVFEEAAK 194
           D + ++ F+  N L +VT +       +F S I+  LLL     S + E+ +  +++AAK
Sbjct: 99  DATKLSRFIEINSLHMVTEYNPVTVIGLFNSVIQIHLLLIMNKASPEYEENMHRYQKAAK 158
Query: 195 SFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKT 254
            F+GK++F+ V    ++ GK +S +     + P +  Y   DD    +   E++++ ++ 
Sbjct: 159 LFQGKILFILVDSGMKENGKVISFFKLKESQLPALAIYQTLDDEWDTLPTAEVSVEHVQN 218
Query: 255 FGEDFLEGK 263
           F + FL GK
Sbjct: 219 FCDGFLSGK 227

>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach Chloroplast (Reduced Form) Length = 105

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 42/84 (50%)
Query: 280 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG 339
           +V+ V  +++ E VL+    V+++ +APWCG C+   P  ++LAK   G  ++     D 
Sbjct: 1   EVQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDE 60
Query: 340 TTNEHHRAKSDGFPTILFFPAGNK 363
                 +      PT+LFF  G +
Sbjct: 61  APGIATQYNIRSIPTVLFFKNGER 84

>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach, Oxidized Form Length = 104

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 38/77 (49%)
Query: 287 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 346
           +++ E VL+    V+++ +APWCG C+   P  ++LAK   G  ++     D       +
Sbjct: 7   SSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQ 66
Query: 347 AKSDGFPTILFFPAGNK 363
                 PT+LFF  G +
Sbjct: 67  YNIRSIPTVLFFKNGER 83

>pdb|3Q6O|A Chain A, Oxidoreductase Fragment Of Human Qsox1 Length = 244

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Query: 293 VLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVD-SIVIAKMDGTTNEHHRAKSD- 350
           VL       +E +A WCGHC AF PT+  LA+ ++    ++ +A +D     +     D 
Sbjct: 26  VLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDF 85
Query: 351 ---GFPTILFFPA 360
              GFPT+ FF A
Sbjct: 86  NIPGFPTVRFFXA 98

>pdb|1DBY|A Chain A, Nmr Structures Of Chloroplast Thioredoxin M Ch2 From The Green Alga Chlamydomonas Reinhardtii Length = 107

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 36/78 (46%)
Query: 287 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 346
           + F  +VL+ S  VL++ +APWCG C+   P  +++A   +     V    D + N    
Sbjct: 9   DTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASE 68
Query: 347 AKSDGFPTILFFPAGNKS 364
                 PTI+ F  G K 
Sbjct: 69  YGIRSIPTIMVFKGGKKC 86

>pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h Length = 108

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 37/75 (49%)
Query: 287 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 346
           ++FD  VL     +L++ +A WCGHC+   P  +++A   +G  ++    +D       +
Sbjct: 10  DSFDTDVLKADGAILVDFWAEWCGHCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 347 AKSDGFPTILFFPAG 361
               G PT+L F  G
Sbjct: 70  YGIRGIPTLLLFKNG 84

>pdb|3TCO|A Chain A, Crystallographic And Spectroscopic Characterization Of Sulfolobus Solfataricus Trxa1 Provide Insights Into The Determinants Of Thioredoxin Fold Stability Length = 109

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Query: 280 DVKIVVGN-NFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD 338
           DV +V+   NFDE++ + +K VL++ +A WC  C  +EP Y K+A+  +G    V  +++
Sbjct: 4   DVTLVLTEENFDEVIRN-NKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKG--KAVFGRLN 60
Query: 339 GTTNEHHRAKSD--GFPTILFFPAG 361
              N+    K      PT L F  G
Sbjct: 61  VDENQKIADKYSVLNIPTTLIFVNG 85

>pdb|2BJX|A Chain A, Protein Disulfide Isomerase Length = 110

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 5/105 (4%)
Query: 57  AERVLTSETKVVLGYLNSLVGSESEVLADASRLEDDVNFYQTTNPDVAKIFHLDSKVNRP 116
           AE ++ S    V+G+   +    ++    A+   DD+ F  T+N DV   + LD    + 
Sbjct: 11  AESLVESSEVAVIGFFKDVESDSAKQFLQAAEAIDDIPFGITSNSDVFSKYQLD----KD 66
Query: 117 ALVMVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENA 161
            +V+ KK  E  + F +G+  K  + DF+  N+LPLV  FT + A
Sbjct: 67  GVVLFKKFDEGRNNF-EGEVTKENLLDFIKHNQLPLVIEFTEQTA 110

>pdb|2PUK|C Chain C, Crystal Srtucture Of The Binary Complex Between Ferredoxin: Thioredoxin Reductase And Thioredoxin M Length = 106

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 41/84 (48%)
Query: 280 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG 339
           +V+ V  +++ E VL+    V+++ +APWCG  +   P  ++LAK   G  ++     D 
Sbjct: 1   EVQDVNDSSWKEFVLESEVPVMVDFWAPWCGPSKLIAPVIDELAKEYSGKIAVYKLNTDE 60
Query: 340 TTNEHHRAKSDGFPTILFFPAGNK 363
                 +      PT+LFF  G +
Sbjct: 61  APGIATQYNIRSIPTVLFFKNGER 84

>pdb|2L5L|A Chain A, Solution Structure Of Thioredoxin From Bacteroides Vulgatus Length = 136

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 287 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 346
            N +E   +  K  +++ YA WCG C+   P  ++LAK   G   IVI K+D T  E   
Sbjct: 28  KNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYDG--QIVIYKVD-TEKEQEL 84
Query: 347 AKSDG---FPTILFFPAGNK 363
           A + G    P+ILF P   K
Sbjct: 85  AGAFGIRSIPSILFIPMEGK 104

>pdb|2CVK|A Chain A, Crystal Structure Of Thermus Thermophilus Thioredoxin Length = 110

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 284 VVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE 343
           V   NFDE  L +   VL++ +A WC  C+   P   ++AK   G   +++AK+D   N 
Sbjct: 7   VTDQNFDE-TLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYEG--KLLVAKLDVDENP 63
Query: 344 H--HRAKSDGFPTILFFPAGN 362
               R +    PT++ F  G 
Sbjct: 64  KTAXRYRVXSIPTVILFKDGQ 84

>pdb|2YZU|A Chain A, Crystal Structure Of Oxidized Thioredoxin From Thermus Thermophilus Hb8 Length = 109

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 284 VVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE 343
           V   NFDE  L +   VL++ +A WC  C+   P   ++AK   G   +++AK+D   N 
Sbjct: 6   VTDQNFDE-TLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYEG--KLLVAKLDVDENP 62
Query: 344 H--HRAKSDGFPTILFFPAGN 362
               R +    PT++ F  G 
Sbjct: 63  KTAXRYRVXSIPTVILFKDGQ 83

>pdb|3EC3|A Chain A, Crystal Structure Of The Bb Fragment Of Erp72 Length = 250

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 101/247 (40%), Gaps = 29/247 (11%)
Query: 51  ITTLDEAERVLTSETKVVLGYLNSLVGSESEVLAD--ASRLEDDVNFYQTTNPDVAKIFH 108
           I TL + +  L     VV+  +   VG    +     A+ L +D  F+ T + ++AK   
Sbjct: 11  ILTLKQVQEFLKDGDDVVILGVFQGVGDPGYLQYQDAANTLREDYKFHHTFSTEIAKFL- 69
Query: 109 LDSKVNRPALVMVKKETEKISYF-------ADGKFDKSTIADFVFSNKLPLVTIFTRENA 161
              KV+   LV+ + E  +  Y          G  + S I D+V  + LPLV      N 
Sbjct: 70  ---KVSLGKLVLXQPEKFQSKYEPRXHVXDVQGSTEASAIKDYVVKHALPLVGHRKTSND 126
Query: 162 PSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLI--------FVYVQMDNEDVG 213
              +    K  L++   S D       +  A + ++ K++        + +   D ED  
Sbjct: 127 AKRYS---KRPLVVVYYSVD---FSFDYRTATQFWRNKVLEVAKDFPEYTFAIADEEDYA 180
Query: 214 KPVSEYFGITGEAPKVLAYTGNDDAKKHILD-GELTLDKIKTFGEDFLEGKLKPFFKSDP 272
             V +  G++     V A   ++  KK   +  E   D ++ F   F +GKLKP  KS P
Sbjct: 181 TEVKD-LGLSESGGDVNAAILDESGKKFAXEPEEFDSDALREFVXAFKKGKLKPVIKSQP 239
Query: 273 IPETNDG 279
           +P+ N G
Sbjct: 240 VPKNNKG 246

>pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v Length = 108

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/78 (26%), Positives = 37/78 (47%)
Query: 284 VVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE 343
           V  ++FD  VL     +L++ +A WCG C+   P  +++A   +G  ++    +D     
Sbjct: 7   VTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 344 HHRAKSDGFPTILFFPAG 361
             +    G PT+L F  G
Sbjct: 67  APKYGIRGIPTLLLFKNG 84

>pdb|2H71|A Chain A, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 37/75 (49%)
Query: 287 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 346
           ++FD  VL     +L++ +A WCG C+   P  +++A+  +G  ++    +D       +
Sbjct: 10  DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIAEEYQGKLTVAKLNIDQNPGTAPK 69
Query: 347 AKSDGFPTILFFPAG 361
               G PT+L F  G
Sbjct: 70  YGIRGIPTLLLFKNG 84

>pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 37/76 (48%)
Query: 287 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 346
           ++FD  VL     +L++ +A WCG C+   P  +++A   +G  ++    +D       +
Sbjct: 10  DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 347 AKSDGFPTILFFPAGN 362
               G PT+L F  G+
Sbjct: 70  YGIRGIPTLLLFKNGD 85

>pdb|2TIR|A Chain A, Crystal Structure Analysis Of A Mutant Escherichia Coli Thioredoxin In Which Lysine 36 Is Replaced By Glutamic Acid Length = 108

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 36/75 (48%)
Query: 287 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 346
           ++FD  VL     +L++ +A WCG C+   P  +++A   +G  ++    +D       +
Sbjct: 10  DSFDTDVLKADGAILVDFWAEWCGPCEMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 347 AKSDGFPTILFFPAG 361
               G PT+L F  G
Sbjct: 70  YGIRGIPTLLLFKNG 84

>pdb|3APS|A Chain A, Crystal Structure Of Trx4 Domain Of Erdj5 Length = 122

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 289 FDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRG 328
           F+E VL      +++ YAPWCG CQ F P +  LA+ ++G
Sbjct: 13  FNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKG 52

>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 36/75 (48%)
Query: 287 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 346
           ++FD  VL     +L++ +A WCG C+   P  +++A   +G  ++    +D       +
Sbjct: 10  DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 347 AKSDGFPTILFFPAG 361
               G PT+L F  G
Sbjct: 70  YGIRGIPTLLLFKNG 84

>pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 36/75 (48%)
Query: 287 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 346
           ++FD  VL     +L++ +A WCG C+   P  +++A   +G  ++    +D       +
Sbjct: 10  DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 347 AKSDGFPTILFFPAG 361
               G PT+L F  G
Sbjct: 70  YGIRGIPTLLLFKNG 84

>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli At 1.68 Angstroms Resolution Length = 108

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 36/75 (48%)
Query: 287 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 346
           ++FD  VL     +L++ +A WCG C+   P  +++A   +G  ++    +D       +
Sbjct: 10  DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 347 AKSDGFPTILFFPAG 361
               G PT+L F  G
Sbjct: 70  YGIRGIPTLLLFKNG 84

>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures Length = 108

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 36/75 (48%)
Query: 287 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 346
           ++FD  VL     +L++ +A WCG C+   P  +++A   +G  ++    +D       +
Sbjct: 10  DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 347 AKSDGFPTILFFPAG 361
               G PT+L F  G
Sbjct: 70  YGIRGIPTLLLFKNG 84

>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin Length = 222

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 36/75 (48%)
Query: 287 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 346
           ++FD  VL     +L++ +A WCG C+   P  +++A   +G  ++    +D       +
Sbjct: 20  DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 79
Query: 347 AKSDGFPTILFFPAG 361
               G PT+L F  G
Sbjct: 80  YGIRGIPTLLLFKNG 94

>pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 36/75 (48%)
Query: 287 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 346
           ++FD  VL     +L++ +A WCG C+   P  +++A   +G  ++    +D       +
Sbjct: 10  DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADDYQGKLTVAKLNIDQNPGTAPK 69
Query: 347 AKSDGFPTILFFPAG 361
               G PT+L F  G
Sbjct: 70  YGIRGIPTLLLFKNG 84

>pdb|2EIQ|A Chain A, Design Of Disulfide-linked Thioredoxin Dimers And Multimers Through Analysis Of Crystal Contacts Length = 108

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 36/75 (48%)
Query: 287 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 346
           ++FD  VL     +L++ +A WCG C+   P  +++A   +G  ++    +D       +
Sbjct: 10  DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 347 AKSDGFPTILFFPAG 361
               G PT+L F  G
Sbjct: 70  YGIRGIPTLLLFKNG 84

>pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And Multimers Through Analysis Of Crystal Contacts Length = 108

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 36/75 (48%)
Query: 287 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 346
           ++FD  VL     +L++ +A WCG C+   P  +++A   +G  ++    +D       +
Sbjct: 10  DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 347 AKSDGFPTILFFPAG 361
               G PT+L F  G
Sbjct: 70  YGIRGIPTLLLFKNG 84

>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/74 (27%), Positives = 35/74 (47%)
Query: 288 NFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRA 347
           +FD  VL     +L++ +A WCG C+   P  +++A   +G  ++    +D       + 
Sbjct: 11  SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKY 70
Query: 348 KSDGFPTILFFPAG 361
              G PT+L F  G
Sbjct: 71  GIRGIPTLLLFKNG 84

>pdb|2H6Z|A Chain A, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 35/75 (46%)
Query: 287 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 346
           ++FD  VL     +L++ +A WCG C+   P  + +A   +G  ++    +D       +
Sbjct: 10  DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDDIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 347 AKSDGFPTILFFPAG 361
               G PT+L F  G
Sbjct: 70  YGIRGIPTLLLFKNG 84

>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C From M. Tb Length = 116

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 284 VVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN- 342
           V   +F   VL  +K VL++ +A WCG C+   P   ++A   R  D + +AK+D  TN 
Sbjct: 12  VTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATE-RATD-LTVAKLDVDTNP 69
Query: 343 EHHRA-KSDGFPTILFFPAGN 362
           E  R  +    PT++ F  G 
Sbjct: 70  ETARNFQVVSIPTLILFKDGQ 90

>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 35/75 (46%)
Query: 287 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 346
           ++FD  VL     +L++ +A WCG C+   P   ++A   +G  ++    +D       +
Sbjct: 10  DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILEEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 347 AKSDGFPTILFFPAG 361
               G PT+L F  G
Sbjct: 70  YGIRGIPTLLLFKNG 84

>pdb|2EIR|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And Multimers Through Analysis Of Crystal Contacts Length = 108

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 36/75 (48%)
Query: 287 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 346
           ++FD  VL     +L++ +A WCG C+   P  +++A   +G  ++    +D       +
Sbjct: 10  DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 347 AKSDGFPTILFFPAG 361
               G PT+L F  G
Sbjct: 70  YGIRGIPTLLLFKNG 84

>pdb|3T58|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN DISULFIDE Length = 519

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 293 VLDESKDVLLEIYAPWCGHCQAFEPTYNKLA---KHLRGVDSIVIAKMDGTTNEH--HRA 347
           VL  S    +E +A WCGH  AF PT+ +LA   K  R   ++ +      TN       
Sbjct: 26  VLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREF 85
Query: 348 KSDGFPTILFFPAGNKS 364
              GFPT+ FF A  K+
Sbjct: 86  NIAGFPTVRFFQAFTKN 102

>pdb|3DYR|A Chain A, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In Its Oxidized Form Length = 111

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 36/75 (48%)
Query: 287 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 346
           ++FD  VL     +L++ +A WCG C+   P  +++A   +G  ++    +D       +
Sbjct: 11  DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 70
Query: 347 AKSDGFPTILFFPAG 361
               G PT+L F  G
Sbjct: 71  YGIRGTPTLLLFKNG 85

>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C Length = 121

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 284 VVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN- 342
           V   +F   VL  +K VL++ +A WCG C+   P   ++A   R  D + +AK+D  TN 
Sbjct: 17  VTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATE-RATD-LTVAKLDVDTNP 74
Query: 343 EHHRA-KSDGFPTILFFPAGN 362
           E  R  +    PT++ F  G 
Sbjct: 75  ETARNFQVVSIPTLILFKDGQ 95

>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 36/75 (48%)
Query: 287 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 346
           ++F+  VL     +L++ +A WCG C+   P  +++A   +G  ++    +D       +
Sbjct: 10  DSFETDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 347 AKSDGFPTILFFPAG 361
               G PT+L F  G
Sbjct: 70  YGIRGIPTLLLFKNG 84

>pdb|2H8L|A Chain A, Crystal Structure Of The Bb' Fragment Of Erp57 Length = 252

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 60/252 (23%), Positives = 107/252 (42%), Gaps = 27/252 (10%)
Query: 46  PGIYNITTLDEAERVLTSETKVVLGYLN-SLVGSESEVLADASRLEDDVNFYQTTNPDVA 104
           P    + T +E ++ ++ +   ++G+ + S   + SE L  AS L D+  F  T    + 
Sbjct: 6   PASVPLRTEEEFKKFISDKDASIVGFFDDSFSEAHSEFLKAASNLRDNYRFAHTNVESLV 65
Query: 105 KIFHLDSK---VNRPALVMVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENA 161
             +  + +   + RP+ +  K E + ++Y  + K     I  F+  N   +    T +N 
Sbjct: 66  NEYDDNGEGIILFRPSHLTNKFEDKTVAY-TEQKXTSGKIKKFIQENIFGICPHXTEDN- 123
Query: 162 PSVFESPIKNQLLLFAVSN-DSEKLLP--------VFEEAAKSFKGKLIFVYVQMDNEDV 212
               +  I+ + LL A  + D EK           V   A K         +     +  
Sbjct: 124 ----KDLIQGKDLLIAYYDVDYEKNAKGSNYWRNRVXXVAKKFLDAGHKLNFAVASRKTF 179
Query: 213 GKPVSEYFGI---TGEAPKVLAYTGNDDAKKHILDGELTLD--KIKTFGEDFLEGKLKPF 267
              +S+ FG+    GE P V   T     +K +   E + D   ++ F +D+ +G LK +
Sbjct: 180 SHELSD-FGLESTAGEIPVVAIRTAK--GEKFVXQEEFSRDGKALERFLQDYFDGNLKRY 236
Query: 268 FKSDPIPETNDG 279
            KS+PIPE+NDG
Sbjct: 237 LKSEPIPESNDG 248

>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis Length = 148

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Query: 278 DGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKM 337
           DG+V        D+++ D+   V+ + +APWCG C++F P + + A    G    V    
Sbjct: 37  DGEVINATAETLDKLLQDDLPXVI-DFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNT 95
Query: 338 DGTTNEHHRAKSDGFPTILFFPAGNKSFDPIN 369
           +       R +    PTI  +  G K  D +N
Sbjct: 96  EAEPALSTRFRIRSIPTIXLYRNG-KXIDXLN 126

>pdb|1X5E|A Chain A, The Solution Structure Of The Thioredoxin-Like Domain Of Human Thioredoxin-Related Transmembrane Protein Length = 126

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 277 NDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAK 336
           + G+V+++   N+ E++     D ++E YAPWC  CQ  +P +   A+    ++ + IAK
Sbjct: 5   SSGNVRVITDENWRELL---EGDWMIEFYAPWCPACQNLQPEWESFAEWGEDLE-VNIAK 60
Query: 337 MDGT 340
           +D T
Sbjct: 61  VDVT 64

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	432
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	4e-95
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	2e-05
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	2e-72
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	5e-19
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	9e-07
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	3e-71
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	9e-25
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	3e-06
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	5e-49
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	1e-46
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	3e-46
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	1e-17
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	1e-04
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	1e-45
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	2e-12
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	3e-10
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	7e-44
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	2e-43
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	8e-42
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	2e-14
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	2e-13
2h8l_A	252	Protein disulfide-isomerase A3; thioredoxin-like f	5e-42
3ec3_A	250	Protein disulfide-isomerase A4; thioredoxin-like f	3e-40
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	2e-39
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	1e-14
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	3e-11
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	3e-32
3bj5_A	147	Protein disulfide-isomerase; thioredoxin fold, cha	4e-32
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	2e-30
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	1e-12
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	5e-30
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	1e-29
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	2e-08
1mek_A	120	Protein disulfide isomerase; electron transport, r	6e-29
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	8e-29
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	9e-29
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	1e-28
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	3e-27
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	3e-25
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	3e-05
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	6e-27
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	5e-26
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	3e-23
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	5e-15
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	1e-12
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	3e-21
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	1e-18
2l4c_A	124	Endoplasmic reticulum resident protein 27; ERP27,	7e-17
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	7e-13
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	3e-11
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	1e-10
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	1e-10
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	1e-10
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	2e-10
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	2e-10
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	2e-10
2l57_A	126	Uncharacterized protein; structural genomics, unkn	6e-10
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	2e-09
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	2e-09
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	3e-09
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	6e-09
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	7e-09
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	9e-09
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	9e-09
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	1e-08
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	2e-08
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	2e-08
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	2e-08
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	2e-08
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	3e-08
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	3e-08
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	4e-08
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	4e-08
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	4e-08
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	4e-08
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	4e-08
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	6e-08
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	6e-08
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	6e-08
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	7e-08
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	7e-08
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	1e-07
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	1e-07
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	2e-07
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	2e-07
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	2e-07
2kuc_A	130	Putative disulphide-isomerase; structural genomics	2e-07
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	3e-07
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	3e-07
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	3e-07
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	3e-07
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	3e-07
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	4e-07
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	4e-07
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	1e-05
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	4e-07
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	1e-06
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	1e-06
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	1e-06
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	2e-06
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	2e-06
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	3e-06
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	4e-06
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	4e-06
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	6e-06
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	7e-06
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	7e-06
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	8e-06
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	9e-06
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	1e-05
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	1e-05
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	1e-05
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	2e-05
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	4e-05
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	4e-05
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	5e-05
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	5e-05
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	9e-05
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	2e-04
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	3e-04
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	3e-04

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A Length = 361

 Score =  289 bits (741), Expect = 4e-95
 Identities = 117/359 (32%), Positives = 187/359 (52%), Gaps = 10/359 (2%)

Query: 34  DAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNSLVGSESEVLADASRLEDDV 93
             +    +         +     AE ++ S    V+G+   +    ++    A+   DD+
Sbjct: 5   SGLEVLFQGPGSEFATTLPDGAAAESLVESSEVAVIGFFKDVESDSAKQFLQAAEAIDDI 64

Query: 94  NFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFADGKFDKSTIADFVFSNKLPLV 153
            F  T+N DV   +    ++++  +V+ KK  E  + F +G+  K  + DF+  N+LPLV
Sbjct: 65  PFGITSNSDVFSKY----QLDKDGVVLFKKFDEGRNNF-EGEVTKENLLDFIKHNQLPLV 119

Query: 154 TIFTRENAPSVFESPIKNQLLLFAVSN--DSEKLLPVFEEAAKSFKGKLIFVYVQMDNED 211
             FT + AP +F   IK  +LLF   +  D +  L  F+ AA+SFKGK++F+++  D+ D
Sbjct: 120 IEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFIFIDSDHTD 179

Query: 212 VGKPVSEYFGITGEAPKVLAYTGNDDAKKHILD-GELTLDKIKTFGEDFLEGKLKPFFKS 270
             + +  +     E P V   T  ++  K+  +  ELT ++I  F   FLEGK+KP   S
Sbjct: 180 NQRILEFFGLKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEGKIKPHLMS 239

Query: 271 DPIPETND-GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV 329
             +PE  D   VK++VG NF+++  DE K+V +E YAPWCGHC+   P ++KL +  +  
Sbjct: 240 QELPEDWDKQPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDH 299

Query: 330 DSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNAS 388
           ++IVIAKMD T NE    K   FPT+ FFPA       I+ + +RT+    KFL+    
Sbjct: 300 ENIVIAKMDSTANEVEAVKVHSFPTLKFFPASADR-TVIDYNGERTLDGFKKFLESGGQ 357

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A Length = 361

 Score = 45.4 bits (107), Expect = 2e-05
 Identities = 41/257 (15%), Positives = 83/257 (32%), Gaps = 41/257 (15%)

Query: 32  SKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNSLVGSESEVLAD-----A 86
           +K+ ++ +IK    P +   T    A ++   E K  +        S+ +         A
Sbjct: 103 TKENLLDFIKHNQLPLVIEFTE-QTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAA 161

Query: 87  SRLEDDVNFY-----QTTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFAD-GKFDKST 140
              +  + F       T N  + + F L      PA+ ++  E E   Y  +  +     
Sbjct: 162 ESFKGKILFIFIDSDHTDNQRILEFFGLKK-EECPAVRLITLEEEMTKYKPESEELTAER 220

Query: 141 IADFV------------------FSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVS--N 180
           I +F                          V +   +N   V     KN  + F      
Sbjct: 221 ITEFCHRFLEGKIKPHLMSQELPEDWDKQPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCG 280

Query: 181 DSEKLLPVFEEAAKSFKG--KLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDA 238
             ++L P++++  +++K    ++   +     +V         +    P +  +  + D 
Sbjct: 281 HCKQLAPIWDKLGETYKDHENIVIAKMDSTANEVEA-----VKVHS-FPTLKFFPASADR 334

Query: 239 KKHILDGELTLDKIKTF 255
                +GE TLD  K F
Sbjct: 335 TVIDYNGERTLDGFKKF 351

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A Length = 481

 Score =  235 bits (599), Expect = 2e-72
 Identities = 107/384 (27%), Positives = 172/384 (44%), Gaps = 13/384 (3%)

Query: 32  SKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNSLVGSESEV-LADASRLE 90
           + D IV+ +KK+ GP    + T +E ++ ++ +   ++G+ +          L  AS L 
Sbjct: 96  TADGIVSHLKKQAGPASVPLRTEEEFKKFISDKDASIVGFFDDSFSEAHSEFLKAASNLR 155

Query: 91  DDVNFYQTTNPDVAKIFHLDSK---VNRPALVMVKKETEKISYFADGKFDKSTIADFVFS 147
           D+  F  T    +   +  + +   + RP+ +  K E + ++Y  + K     I  F+  
Sbjct: 156 DNYRFAHTNVESLVNEYDDNGEGIILFRPSHLTNKFEDKTVAYT-EQKMTSGKIKKFIQE 214

Query: 148 NKLPLVTIFTRENAPSVFESPIKNQLLLFAVSN---DSEKLLPVFEEAAKSFKGKLIFVY 204
           N   +    T +N   +    +               S          AK F      + 
Sbjct: 215 NIFGICPHMTEDNKDLIQGKDLLIAYYDVDYEKNAKGSNYWRNRVMMVAKKFLDAGHKLN 274

Query: 205 VQMDNEDVGKPVSEYFGITGEA---PKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE 261
             + +          FG+   A   P V   T   +      +       ++ F +D+ +
Sbjct: 275 FAVASRKTFSHELSDFGLESTAGEIPVVAIRTAKGEKFVMQEEFSRDGKALERFLQDYFD 334

Query: 262 GKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNK 321
           G LK + KS+PIPE+NDG VK+VV  NFDEIV +E+KDVL+E YAPWCGHC+  EP Y +
Sbjct: 335 GNLKRYLKSEPIPESNDGPVKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKE 394

Query: 322 LAKHLRGVDSIVIAKMDGTTNEH-HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALY 380
           L + L    +IVIAKMD T N+     +  GFPTI F PA  K  +P   +  R +    
Sbjct: 395 LGEKLSKDPNIVIAKMDATANDVPSPYEVRGFPTIYFSPANKKL-NPKKYEGGRELSDFI 453

Query: 381 KFLKKNASIPFKIQKPTSAPKTEK 404
            +L++ A+ P  IQ+     K + 
Sbjct: 454 SYLQREATNPPVIQEEKPKKKKKA 477

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A Length = 481

 Score = 88.0 bits (217), Expect = 5e-19
 Identities = 36/115 (31%), Positives = 54/115 (46%), Gaps = 9/115 (7%)

Query: 280 DVKIVVGNNFDEIVLDESKD--VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKM 337
           DV  +  +NF+  + D      +L+E +APWCGH +   P Y   A  L+G   + +AK+
Sbjct: 2   DVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKG--IVPLAKV 59

Query: 338 DGTTNEHHRAKSD--GFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIP 390
           D T N +   K    G+PT+  F  G ++      D  RT   +   LKK A   
Sbjct: 60  DCTANTNTCNKYGVSGYPTLKIFRDGEEAGA---YDGPRTADGIVSHLKKQAGPA 111

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A Length = 481

 Score = 49.9 bits (118), Expect = 9e-07
 Identities = 35/227 (15%), Positives = 74/227 (32%), Gaps = 33/227 (14%)

Query: 182 SEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKH 241
           +++L P +E AA   KG +    V   +          +G++G  P +  +   ++A  +
Sbjct: 36  AKRLAPEYEAAATRLKGIVPLAKV---DCTANTNTCNKYGVSG-YPTLKIFRDGEEAGAY 91

Query: 242 ILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVL 301
             DG  T D I +  +     +  P                 +      +  + +    +
Sbjct: 92  --DGPRTADGIVSHLKK----QAGP-------------ASVPLRTEEEFKKFISDKDASI 132

Query: 302 LEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAG 361
           +  +             + K A +LR         ++   NE+     +G   ILF P+ 
Sbjct: 133 VGFFDDSFSEAH---SEFLKAASNLRDNYRFAHTNVESLVNEYD---DNGEGIILFRPSH 186

Query: 362 NKS-FDPINVDVD---RTVVALYKFLKKNASIPFKIQKPTSAPKTEK 404
             + F+   V       T   + KF+++N           +    + 
Sbjct: 187 LTNKFEDKTVAYTEQKMTSGKIKKFIQENIFGICPHMTEDNKDLIQG 233

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A Length = 504

 Score =  232 bits (592), Expect = 3e-71
 Identities = 98/416 (23%), Positives = 165/416 (39%), Gaps = 35/416 (8%)

Query: 32  SKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNSLVGSESEVLADASRLED 91
           + +AIV ++ K+  P +  +  L       T  T V++          +   + A++  +
Sbjct: 109 TAEAIVQFMIKQSQPAVAVVADLPAYLANETFVTPVIVQSGKIDADFNATFYSMANKHFN 168

Query: 92  DVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFAD--GKFDKSTIADFVFSNK 149
           D +F    N D            + ++ +     E + Y        D      ++    
Sbjct: 169 DYDFVSAENADDDF---------KLSIYLPSAMDEPVVYNGKKADIADADVFEKWLQVEA 219

Query: 150 LPLVTIFTRENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDN 209
           LP              ES +    L +    + E+  P+F E AK  +G + FV +    
Sbjct: 220 LPYFGEIDGSVFAQYVESGLPLGYLFYNDEEELEEYKPLFTELAKKNRGLMNFVSIDARK 279

Query: 210 EDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILD------------GELTLDKIKTFGE 257
                  +    +  + P    +   +D K  +                L    I++  +
Sbjct: 280 F---GRHAGNLNMKEQFPLFAIHDMTEDLKYGLPQLSEEAFDELSDKIVLESKAIESLVK 336

Query: 258 DFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEP 317
           DFL+G   P  KS  I E  D  V  +VG N DEIV D  KDVL+  YAPWCGHC+   P
Sbjct: 337 DFLKGDASPIVKSQEIFENQDSSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAP 396

Query: 318 TYNKLAKHLRGVDS-IVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTV 376
           TY +LA       S ++IAK+D T N+      +G+PTI+ +P G KS + +     R++
Sbjct: 397 TYQELADTYANATSDVLIAKLDHTENDVRGVVIEGYPTIVLYPGGKKS-ESVVYQGSRSL 455

Query: 377 VALYKFLKKNASIPFKIQKPTSAPKTEKPTSEPKAESSDIKESHESSSDKDVKDEL 432
            +L+ F+K+N              K     ++ KA      ++  +  +  + DEL
Sbjct: 456 DSLFDFIKENGHFDVD-------GKALYEEAQEKAAEEADADAELADEEDAIHDEL 504

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A Length = 504

 Score =  105 bits (262), Expect = 9e-25
 Identities = 36/146 (24%), Positives = 67/146 (45%), Gaps = 6/146 (4%)

Query: 266 PFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKH 325
              + + +    D  V  +  ++F+E +      VL E +APWCGHC+   P Y K A+ 
Sbjct: 2   GHMQQEAVAP-EDSAVVKLATDSFNEYI-QSHDLVLAEFFAPWCGHCKNMAPEYVKAAET 59

Query: 326 LRGVDSIVIAKMDGTTNEHHRAKSD--GFPTILFFPAGNKSFDPINVDVDRTVVALYKFL 383
           L    +I +A++D T N+    + +  GFP++  F   + + + I+ +  RT  A+ +F+
Sbjct: 60  LVE-KNITLAQIDCTENQDLCMEHNIPGFPSLKIFKNSDVN-NSIDYEGPRTAEAIVQFM 117

Query: 384 KKNASIPFKIQKPTSAPKTEKPTSEP 409
            K +     +     A    +    P
Sbjct: 118 IKQSQPAVAVVADLPAYLANETFVTP 143

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A Length = 504

 Score = 48.3 bits (114), Expect = 3e-06
 Identities = 30/213 (14%), Positives = 63/213 (29%), Gaps = 16/213 (7%)

Query: 182 SEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKH 241
            + + P + +AA++   K I +  Q+D     + +     I G  P +  +  +D     
Sbjct: 46  CKNMAPEYVKAAETLVEKNITL-AQIDC-TENQDLCMEHNIPG-FPSLKIFKNSDVNNSI 102

Query: 242 ILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVL 301
             +G  T + I  F     +  +                  ++V           S  + 
Sbjct: 103 DYEGPRTAEAIVQFMIKQSQPAVAVVADLPAYLANETFVTPVIVQ----------SGKID 152

Query: 302 LEIYAPWCGHCQAFEPTYNKLA---KHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFF 358
            +  A +          Y+ ++          SI +         ++  K+D     +F 
Sbjct: 153 ADFNATFYSMANKHFNDYDFVSAENADDDFKLSIYLPSAMDEPVVYNGKKADIADADVFE 212

Query: 359 PAGNKSFDPINVDVDRTVVALYKFLKKNASIPF 391
                   P   ++D +V A Y          F
Sbjct: 213 KWLQVEALPYFGEIDGSVFAQYVESGLPLGYLF 245

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} Length = 133

 Score =  162 bits (412), Expect = 5e-49
 Identities = 57/130 (43%), Positives = 82/130 (63%), Gaps = 4/130 (3%)

Query: 276 TNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIA 335
            + G VK+VVG  FD IV+D  KDVL+E YAPWCGHC+  EP Y  L K  +G   +VIA
Sbjct: 4   GSSGPVKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIA 63

Query: 336 KMDGTTNE--HHRAKSDGFPTILFFPAGNKSFDPINVDV-DRTVVALYKFLKKNASIPFK 392
           KMD T N+  + + K +GFPTI F P+G+K  +PI  +  +R +  L KF+ ++A+   +
Sbjct: 64  KMDATANDITNDQYKVEGFPTIYFAPSGDKK-NPIKFEGGNRDLEHLSKFIDEHATKRSR 122

Query: 393 IQKPTSAPKT 402
            ++  S P +
Sbjct: 123 TKEELSGPSS 132

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A Length = 121

 Score =  155 bits (394), Expect = 1e-46
 Identities = 53/120 (44%), Positives = 71/120 (59%), Gaps = 5/120 (4%)

Query: 274 PETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV---D 330
           P  ++G V +VV  N++EIVLD++KDVL+E YAPWCGHC+A  P Y +L          D
Sbjct: 2   PLGSEGPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKD 61

Query: 331 SIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIP 390
            +VIAK+D T N+    +  GFPTI  +PAG K   P+     RTV  L KF+ +N    
Sbjct: 62  RVVIAKVDATAND-VPDEIQGFPTIKLYPAGAKG-QPVTYSGSRTVEDLIKFIAENGKYK 119

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens} Length = 382

 Score =  163 bits (413), Expect = 3e-46
 Identities = 49/279 (17%), Positives = 85/279 (30%), Gaps = 17/279 (6%)

Query: 32  SKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNSLVGSESEVLAD-ASRLE 90
           S  A+  +I+++    I  I  L E    L    + ++GY          V    A+ L 
Sbjct: 104 SVKALADYIRQQKSDPIQEIRDLAEIT-TLDRSKRNIIGYFEQKDSDNYRVFERVANILH 162

Query: 91  DDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFADGKFDKSTIADFVFSNKL 150
           DD  F  +   DV+K            +      +     +     +     +++    +
Sbjct: 163 DDCAFL-SAFGDVSKPERYSGD---NIIYKPPGHSAPDMVYLGAMTNFDVTYNWIQDKCV 218

Query: 151 PLVTIFTRENAPSVFESPIKNQLLLFAVSN--DSEKLLPVFEEAAKSFKGKLIFVYVQMD 208
           PLV   T EN   + E  +   +L     +    E           S KG + F++   D
Sbjct: 219 PLVREITFENGEELTEEGLPFLILFHMKEDTESLEIFQNEVARQLISEKGTINFLHA--D 276

Query: 209 NEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLKPFF 268
            +    P+        + P +   +             L   K+K F  D   GKL   F
Sbjct: 277 CDKFRHPLLHIQKTPADCPVIAIDSFRHMYVFGDFKDVLIPGKLKQFVFDLHSGKLHREF 336

Query: 269 KSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAP 307
              P P           G    ++     +    +  AP
Sbjct: 337 HHGPDPTDTA------PGEQAQDVASSPPESSFQK-LAP 368

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens} Length = 382

 Score = 83.1 bits (205), Expect = 1e-17
 Identities = 26/131 (19%), Positives = 54/131 (41%), Gaps = 9/131 (6%)

Query: 278 DGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLR----GVDSIV 333
             ++  +   N DE +L+ +   L+  YA WC   Q   P + + +  ++      + +V
Sbjct: 4   GSEITSLDTENIDE-ILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVV 62

Query: 334 IAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPF 391
            A++D   +     R +   +PT+  F  G            R+V AL  ++++  S P 
Sbjct: 63  FARVDCDQHSDIAQRYRISKYPTLKLFRNGMMM--KREYRGQRSVKALADYIRQQKSDPI 120

Query: 392 KIQKPTSAPKT 402
           +  +  +   T
Sbjct: 121 QEIRDLAEITT 131

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens} Length = 382

 Score = 43.0 bits (101), Expect = 1e-04
 Identities = 29/212 (13%), Positives = 69/212 (32%), Gaps = 37/212 (17%)

Query: 182 SEKLLPVFEEAAKSFK------GKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGN 235
           S+ L P+FEEA+   K       +++F  V   + D    +++ + I+   P  L    N
Sbjct: 37  SQMLHPIFEEASDVIKEEFPNENQVVFARV---DCDQHSDIAQRYRISKY-P-TLKLFRN 91

Query: 236 DDAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLD 295
               K    G+ ++  +  +                        D    + +  +   LD
Sbjct: 92  GMMMKREYRGQRSVKALADYIRQQK------------------SDPIQEIRDLAEITTLD 133

Query: 296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTI 355
            SK  ++  +             + ++A  L    + +         +  + +      I
Sbjct: 134 RSKRNIIGYFE---QKDSDNYRVFERVANILHDDCAFLS-----AFGDVSKPERYSGDNI 185

Query: 356 LFFPAGNKSFDPINVDVDRTVVALYKFLKKNA 387
           ++ P G+ + D + +         Y +++   
Sbjct: 186 IYKPPGHSAPDMVYLGAMTNFDVTYNWIQDKC 217

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3trq_A* 3trp_A* 3uom_A Length = 367

 Score =  160 bits (407), Expect = 1e-45
 Identities = 39/261 (14%), Positives = 91/261 (34%), Gaps = 16/261 (6%)

Query: 32  SKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKV-VLGYLNSLVGSESEVLAD-ASRL 89
           S D +V ++   +   +  I    E +     E ++ ++GY  +      +   + A   
Sbjct: 111 SADTLVEFLLDVLEDPVELIEGERELQAFENIEDEIKLIGYFKNKDSEHYKAFKEAAEEF 170

Query: 90  EDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFADGKFDKSTIADFVFSNK 149
              + F+ T +  VAK       +    +   +   E+     D    +  I +FV  ++
Sbjct: 171 HPYIPFFATFDSKVAKKLT----LKLNEIDFYEAFMEEPVTIPDKPNSEEEIVNFVEEHR 226

Query: 150 LPLVTIFTRENAPSVFESPIKNQLLLFAVSNDSE---KLLPVFEEAAKSFKGKLIFVYVQ 206
              +     E+    +E  +    ++           + L + +  A+          + 
Sbjct: 227 RSTLRKLKPESMYETWEDDMDGIHIVAFAEEADPDGYEFLEILKSVAQDNTDNPDLSIIW 286

Query: 207 MDNEDVGKPVSEY---FGITGEAPKVLAYTGNDDAKKHI----LDGELTLDKIKTFGEDF 259
           +D +D    V  +   F I   AP++      D     +     +   + ++++ + ED 
Sbjct: 287 IDPDDFPLLVPYWEKTFDIDLSAPQIGVVNVTDADSVWMEMDDEEDLPSAEELEDWLEDV 346

Query: 260 LEGKLKPFFKSDPIPETNDGD 280
           LEG++      D   + +D D
Sbjct: 347 LEGEINTEDDDDEDDDDDDDD 367

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3trq_A* 3trp_A* 3uom_A Length = 367

 Score = 67.3 bits (164), Expect = 2e-12
 Identities = 21/135 (15%), Positives = 41/135 (30%), Gaps = 17/135 (12%)

Query: 269 KSDPIPETNDGDVKIVV--GNNFDEIVLDESKDVLLEIYAPWCGHC------QAFEPTYN 320
           +    PE  DG  +++     N+   V  + + + L  + P           +  E    
Sbjct: 2   EGLDFPE-YDGVDRVINVNAKNYKN-VFKKYEVLALLYHEPPEDDKASQRQFEMEELILE 59

Query: 321 KLAKHLRGVDSIVIAKMDGTTNEHHRAKSD--GFPTILFFPAGNKSFDPINVDVDRTVVA 378
             A+ L     +    +D   +     K       +I  F         I  D + +   
Sbjct: 60  LAAQVLED-KGVGFGLVDSEKDAAVAKKLGLTEEDSIYVFKEDE----VIEYDGEFSADT 114

Query: 379 LYKFLKKNASIPFKI 393
           L +FL      P ++
Sbjct: 115 LVEFLLDVLEDPVEL 129

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3trq_A* 3trp_A* 3uom_A Length = 367

 Score = 60.8 bits (147), Expect = 3e-10
 Identities = 41/299 (13%), Positives = 90/299 (30%), Gaps = 42/299 (14%)

Query: 98  TTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFT 157
             +  VAK   L       ++ + K++ E I Y  DG+F   T+ +F+       V +  
Sbjct: 78  EKDAAVAKKLGLTE---EDSIYVFKED-EVIEY--DGEFSADTLVEFLLDVLEDPVELIE 131

Query: 158 RENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVS 217
            E     FE+      L+    N   +    F+EAA+ F   + F             V+
Sbjct: 132 GERELQAFENIEDEIKLIGYFKNKDSEHYKAFKEAAEEFHPYIPFFAT------FDSKVA 185

Query: 218 EYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETN 277
           +   +     ++  Y    +    I D   + ++I     +F+E   +            
Sbjct: 186 KKLTLKL--NEIDFYEAFMEEPVTIPDKPNSEEEIV----NFVEEHRRST---------- 229

Query: 278 DGDVKIVVGNNFDEIVLDE-SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAK 336
              ++ +   +  E   D+     ++            F      +A+       + I  
Sbjct: 230 ---LRKLKPESMYETWEDDMDGIHIVAFAEEADPDGYEFLEILKSVAQDNTDNPDLSIIW 286

Query: 337 MDGTTNEHHRA----------KSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKK 385
           +D                    +     +    A +   +  + +   +   L  +L+ 
Sbjct: 287 IDPDDFPLLVPYWEKTFDIDLSAPQIGVVNVTDADSVWMEMDDEEDLPSAEELEDWLED 345

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} Length = 127

 Score =  148 bits (376), Expect = 7e-44
 Identities = 29/126 (23%), Positives = 51/126 (40%), Gaps = 8/126 (6%)

Query: 268 FKSDPIPETNDG--DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKH 325
             +  +    +    V  +    FD IV+D  KDV +  Y PW  H  A    ++ L+  
Sbjct: 2   HMASNVANDGERPSRVVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMS 61

Query: 326 LRGV---DSIVIAKMDGTTN--EHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALY 380
                   + V A++DG        R +  GFPT+ ++   +K  +P      R +  + 
Sbjct: 62  QSQKRNHLTFVAARIDGEKYPDVIERMRVSGFPTMRYYTRIDKQ-EPFEYSGQRYLSLVD 120

Query: 381 KFLKKN 386
            F+ +N
Sbjct: 121 SFVFQN 126

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score =  161 bits (407), Expect = 2e-43
 Identities = 54/391 (13%), Positives = 116/391 (29%), Gaps = 56/391 (14%)

Query: 32  SKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNSLVG------SESEVLAD 85
           SK+++V +  + +   +  ++T       + +     +G+L +         +    L  
Sbjct: 208 SKESLVAFAMQHVRSTVTELST-GNFVNAIETAFAAGVGWLITFCSKGEDCLTSQTRLRL 266

Query: 86  ASRLEDDVNFYQ---TTNPDVAKIFHLDSKVNRPALVMVKK-----ETEKISYFADGKFD 137
           +  L+  VN           + K                       + EK S       D
Sbjct: 267 SGMLDGLVNVGWVDCDAQDSLCKSL----DTTASTTAYFPPGATLNDREKSSVLFLNSLD 322

Query: 138 KSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFK 197
              I   +  N LP   + +               L+ F    +     P  ++     K
Sbjct: 323 AKEIYMEIIHN-LPDFELLSANQLEDRLAH--HRWLVFFHFGKNENANDPELKKLKTLLK 379

Query: 198 GKLI-FVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFG 256
            + I  V     +      +     +    P +  + G    +  I  G+  L  I  F 
Sbjct: 380 NEHIQVVRF---DCSSAPGICSDLYVFQ--PSLAVFKGQGTKEYEIHHGKKILYDILAF- 433

Query: 257 EDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFE 316
                             E+ +  V  +   NF      + +  L++ +APW    +A  
Sbjct: 434 ----------------AKESVNSHVTTLGPQNFPA---SDKEPWLVDFFAPWSPPSRALL 474

Query: 317 PTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDR 374
           P   K +  L G   + +  +D T +E   +      +PT + F   +        +   
Sbjct: 475 PELRKASTLLYG--QLKVGTLDCTIHEGLCNMYNIQAYPTTVVFNQSS----IHEYEGHH 528

Query: 375 TVVALYKFLKKNASIPFKIQKPTSAPKTEKP 405
           +   + +F++   +       P++  +  K 
Sbjct: 529 SAEQILEFIEDLRNPSVVSLTPSTFNELVKQ 559

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score =  156 bits (396), Expect = 8e-42
 Identities = 39/322 (12%), Positives = 93/322 (28%), Gaps = 36/322 (11%)

Query: 86  ASRLEDDVNFYQ---TTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFADGKFDKSTIA 142
           ++ L   +       T +  +  ++++ +    P  V+  +      Y  +G      I 
Sbjct: 481 STLLYGQLKVGTLDCTIHEGLCNMYNIQA---YPTTVVFNQS-SIHEY--EGHHSAEQIL 534

Query: 143 DFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVSND----SEKLLPVFEEAAKSFKG 198
           +F+   + P V   T      + +    +++ +    +     S+ L+P ++  A++  G
Sbjct: 535 EFIEDLRNPSVVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTG 594

Query: 199 KLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGED 258
            +    V                +    P++  Y                          
Sbjct: 595 LINVGSVDCGQY---HSFCTQENVQR-YPEIRFYPQKSSKAYQY--------------HS 636

Query: 259 FLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPT 318
           +       +                +    F+E VL      +++ YAPW G  Q F P 
Sbjct: 637 YNGWNRDAYSLRSWGLGFLPQASIDLTPQTFNEKVLQGKTHWVVDFYAPWSGPSQNFAPE 696

Query: 319 YNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDV-DRT 375
           +  LA+ ++    +   K+D         +A    +P++  +             +  R 
Sbjct: 697 FELLARMIK--GKVRAGKVDCQAYPQTCQKAGIKAYPSVKLYQYERAKKSIWEEQINSRD 754

Query: 376 VVALYKFLKKNASIPFKIQKPT 397
              +   +           K  
Sbjct: 755 AKTIAALIYGKLETLQSQVKRN 776

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 74.8 bits (183), Expect = 2e-14
 Identities = 32/251 (12%), Positives = 71/251 (28%), Gaps = 31/251 (12%)

Query: 184 KLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHIL 243
            L P + E AK   G L    V   ++   + +    G+    P +  +     A K+  
Sbjct: 150 DLAPTWREFAKEVDGLLRIGAVNCGDD---RMLCRMKGVNS-YPSLFIFRSGMAAVKY-- 203

Query: 244 DGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLE 303
           +G+ + + +      F    ++               V  +   NF   + + +    + 
Sbjct: 204 NGDRSKESLV----AFAMQHVRS-------------TVTELSTGNFVNAI-ETAFAAGVG 245

Query: 304 IYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAG 361
               +C   +    +  +L         + +  +D    +       +    T  F P  
Sbjct: 246 WLITFCSKGEDCLTSQTRLRLSGMLDGLVNVGWVDCDAQDSLCKSLDTTASTTAYFPP-- 303

Query: 362 NKSFDPINVDVDRTVVALYKFLKKNASIPFKIQKPTSAPKTEKPTSEPKAESSDIKESHE 421
                 +N     +V+ L     K   +      P     +     +  A    +   H 
Sbjct: 304 ---GATLNDREKSSVLFLNSLDAKEIYMEIIHNLPDFELLSANQLEDRLAHHRWLVFFHF 360

Query: 422 SSSDKDVKDEL 432
             ++     EL
Sbjct: 361 GKNENANDPEL 371

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 71.3 bits (174), Expect = 2e-13
 Identities = 27/176 (15%), Positives = 57/176 (32%), Gaps = 15/176 (8%)

Query: 214 KPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPI 273
                 F     A +VL     D+  +   D           G  +       +      
Sbjct: 58  PNAHGDFLKINRAYEVL----KDEDLRKKYDKYGEKGLEDNQGGQYESWSYYRYDFGIYD 113

Query: 274 PETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIV 333
               D ++  +    FD  V +  +   +  Y+P   H     PT+ + AK + G+  + 
Sbjct: 114 D---DPEIITLERREFDAAV-NSGELWFVNFYSPGSSHSHDLAPTWREFAKEVDGL--LR 167

Query: 334 IAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA 387
           I  ++   +         + +P++  F +G  +        DR+  +L  F  ++ 
Sbjct: 168 IGAVNCGDDRMLCRMKGVNSYPSLFIFRSGMAAVKYNG---DRSKESLVAFAMQHV 220

>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens} Length = 252

 Score =  148 bits (374), Expect = 5e-42
 Identities = 44/248 (17%), Positives = 90/248 (36%), Gaps = 11/248 (4%)

Query: 45  GPGIYNITTLDEAERVLTSETKVVLGYLNSLVGSESEVLAD-ASRLEDDVNFYQTTNPDV 103
            P    + T +E ++ ++ +   ++G+ +             AS L D+  F  T    +
Sbjct: 5   SPASVPLRTEEEFKKFISDKDASIVGFFDDSFSEAHSEFLKAASNLRDNYRFAHTNVESL 64

Query: 104 AKIFHLDSK---VNRPALVMVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTREN 160
              +  + +   + RP+ +  K E + ++Y  + K     I  F+  N   +    T +N
Sbjct: 65  VNEYDDNGEGIILFRPSHLTNKFEDKTVAYT-EQKMTSGKIKKFIQENIFGICPHMTEDN 123

Query: 161 APSVFESPIKNQLLLFAVSN---DSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVS 217
              +    +               S          AK F      +   + +        
Sbjct: 124 KDLIQGKDLLIAYYDVDYEKNAKGSNYWRNRVMMVAKKFLDAGHKLNFAVASRKTFSHEL 183

Query: 218 EYFGITGEAPKV-LAYTGNDDAKKHILDGE--LTLDKIKTFGEDFLEGKLKPFFKSDPIP 274
             FG+   A ++ +        +K ++  E       ++ F +D+ +G LK + KS+PIP
Sbjct: 184 SDFGLESTAGEIPVVAIRTAKGEKFVMQEEFSRDGKALERFLQDYFDGNLKRYLKSEPIP 243

Query: 275 ETNDGDVK 282
           E+NDG   
Sbjct: 244 ESNDGAAA 251

>3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic reticulum, glycoprotein, redox-active center; 1.92A {Rattus norvegicus} Length = 250

 Score =  143 bits (361), Expect = 3e-40
 Identities = 57/249 (22%), Positives = 91/249 (36%), Gaps = 15/249 (6%)

Query: 45  GPGIYNITTLDEAERVLTSETKV-VLGYLNSLVGSESEVLAD-ASRLEDDVNFYQTTNPD 102
            P    I TL + +  L     V +LG    +         D A+ L +D  F+ T + +
Sbjct: 5   SPPSKEILTLKQVQEFLKDGDDVVILGVFQGVGDPGYLQYQDAANTLREDYKFHHTFSTE 64

Query: 103 VAKIFHLDSK---VNRPALVMVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRE 159
           +AK   +      + +P     K E         G  + S I D+V  + LPLV      
Sbjct: 65  IAKFLKVSLGKLVLMQPEKFQSKYEPRMHVMDVQGSTEASAIKDYVVKHALPLVGHRKTS 124

Query: 160 NAPSVFESPIKNQLLLFAV-----SNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGK 214
           N    +       +             ++       E AK F     + +   D ED   
Sbjct: 125 NDAKRYSKRPLVVVYYSVDFSFDYRTATQFWRNKVLEVAKDFPE---YTFAIADEEDYAT 181

Query: 215 PVSEYFGITGEAPKVLAYTGNDDAKKHILDG-ELTLDKIKTFGEDFLEGKLKPFFKSDPI 273
            V +  G++     V A   ++  KK  ++  E   D ++ F   F +GKLKP  KS P+
Sbjct: 182 EV-KDLGLSESGGDVNAAILDESGKKFAMEPEEFDSDALREFVMAFKKGKLKPVIKSQPV 240

Query: 274 PETNDGDVK 282
           P+ N G   
Sbjct: 241 PKNNKGAAA 249

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A Length = 350

 Score =  144 bits (363), Expect = 2e-39
 Identities = 38/246 (15%), Positives = 90/246 (36%), Gaps = 18/246 (7%)

Query: 32  SKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKV-VLGYLNSLVGSESEVLAD-ASRL 89
           + D +V ++   I   +  I +  E +     E ++ ++G+  S      +   + A   
Sbjct: 109 AADVLVEFLLDLIEDPVEIINSKLEVQAFERIEDQIKLIGFFKSEESEYYKAFEEAAEHF 168

Query: 90  EDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFADGKFDKSTIADFVFSNK 149
           +  + F+ T +  VAK       +    +   +   ++     D  + +  + +FV  ++
Sbjct: 169 QPYIKFFATFDKGVAKKLS----LKMNEVDFYEPFMDEPIAIPDKPYTEEELVEFVKEHQ 224

Query: 150 LPLVTIFTRENAPSVFESPIKNQLLLFAVSN---DSEKLLPVFEEAAKSFKGKLIFVYVQ 206
            P +     E+    +E  +    ++        D  + L + ++ A+          V 
Sbjct: 225 RPTLRRLRPEDMFETWEDDLNGIHIVAFAERSDPDGYEFLEILKQVARDNTDNPDLSIVW 284

Query: 207 MDNEDVGKPVSEYFGITG----EAPKVLAYTGNDDAKKHIL----DGELTLDKIKTFGED 258
           +D +D    V  Y+  T       P++      D     +     D   T ++++ + ED
Sbjct: 285 IDPDDFPLLV-AYWEKTFKIDLFKPQIGVVNVTDADSVWMEIPDDDDLPTAEELEDWIED 343

Query: 259 FLEGKL 264
            L GK+
Sbjct: 344 VLSGKI 349

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A Length = 350

 Score = 73.6 bits (180), Expect = 1e-14
 Identities = 20/147 (13%), Positives = 38/147 (25%), Gaps = 15/147 (10%)

Query: 272 PIPE-TNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV- 329
             P       V  +   NF +++  +  DVL   Y       +  +  +      L  V 
Sbjct: 3   NFPTYDGKDRVVSLTEKNFKQVL--KKYDVLCLYYHESVSSDKVAQKQFQLKEIVLELVA 60

Query: 330 -----DSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKF 382
                  I    +D         +   D   ++            I  D +     L +F
Sbjct: 61  QVLEHKDIGFVMVDAKKEAKLAKKLGFDEEGSLYVLKGDR----TIEFDGEFAADVLVEF 116

Query: 383 LKKNASIPFKIQKPTSAPKTEKPTSEP 409
           L      P +I       +  +   + 
Sbjct: 117 LLDLIEDPVEIINSKLEVQAFERIEDQ 143

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A Length = 350

 Score = 63.6 bits (154), Expect = 3e-11
 Identities = 42/298 (14%), Positives = 89/298 (29%), Gaps = 40/298 (13%)

Query: 98  TTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFT 157
                +AK    D      +L ++K +        DG+F    + +F+       V I  
Sbjct: 76  KKEAKLAKKLGFDE---EGSLYVLKGDRT---IEFDGEFAADVLVEFLLDLIEDPVEIIN 129

Query: 158 RENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVS 217
            +     FE       L+    ++  +    FEEAA+ F+  + F           K V+
Sbjct: 130 SKLEVQAFERIEDQIKLIGFFKSEESEYYKAFEEAAEHFQPYIKFFAT------FDKGVA 183

Query: 218 EYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETN 277
           +   +     +V  Y    D    I D   T +++     +F++   +P           
Sbjct: 184 KKLSLKM--NEVDFYEPFMDEPIAIPDKPYTEEELV----EFVKEHQRPTL--------- 228

Query: 278 DGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKM 337
               ++   + F+    D +   ++            F     ++A+       + I  +
Sbjct: 229 ---RRLRPEDMFETWEDDLNGIHIVAFAERSDPDGYEFLEILKQVARDNTDNPDLSIVWI 285

Query: 338 DGTTNEHHRA----------KSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKK 385
           D        A                 +    A +   +  + D   T   L  +++ 
Sbjct: 286 DPDDFPLLVAYWEKTFKIDLFKPQIGVVNVTDADSVWMEIPDDDDLPTAEELEDWIED 343

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} Length = 140

 Score =  118 bits (297), Expect = 3e-32
 Identities = 45/146 (30%), Positives = 67/146 (45%), Gaps = 16/146 (10%)

Query: 269 KSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRG 328
             D +    +  V ++   NFD  V D+   VLLE YAPWCGHC+ F P Y K+A  L+ 
Sbjct: 7   GDDDLEVKEENGVWVLNDGNFDNFVADK-DTVLLEFYAPWCGHCKQFAPEYEKIASTLKD 65

Query: 329 VDS-IVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKK 385
            D  I +AK+D T+      +    G+PTI     G      ++ D  RT   +   +++
Sbjct: 66  NDPPIAVAKIDATSASMLASKFDVSGYPTIKILKKGQ----AVDYDGSRTQEEIVAKVRE 121

Query: 386 NASIPFKIQKPTSAPKTEKPTSEPKA 411
            +       +P   P  E  TS P +
Sbjct: 122 VS-------QPDWTPPPE-VTSGPSS 139

>3bj5_A Protein disulfide-isomerase; thioredoxin fold, chaperone, endoplasmic reticulum, isomeras membrane, redox-active center; 2.20A {Homo sapiens} Length = 147

 Score =  118 bits (296), Expect = 4e-32
 Identities = 52/139 (37%), Positives = 78/139 (56%), Gaps = 5/139 (3%)

Query: 144 FVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVSN--DSEKLLPVFEEAAKSFKGKLI 201
            +  N+LPLV  FT + AP +F   IK  +LLF   +  D +  L  F+ AA+SFKGK++
Sbjct: 7   HMKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKIL 66

Query: 202 FVYVQMDNEDVGKPVSEYFGITGE-APKVLAYTGNDDAKKHILDG-ELTLDKIKTFGEDF 259
           F ++  D+ D  + + E+FG+  E  P V   T  ++  K+  +  ELT ++I  F   F
Sbjct: 67  FAFIDSDHTD-NQRILEFFGLKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRF 125

Query: 260 LEGKLKPFFKSDPIPETND 278
           LEGK+KP   S  +PE  D
Sbjct: 126 LEGKIKPHLMSQELPEDWD 144

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens} Length = 244

 Score =  117 bits (293), Expect = 2e-30
 Identities = 32/151 (21%), Positives = 52/151 (34%), Gaps = 6/151 (3%)

Query: 276 TNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDS-IVI 334
           +    + ++  +     VL       +E +A WCGHC AF PT+  LA+ ++     + +
Sbjct: 9   SPSDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYL 68

Query: 335 AKMDGTTNEHHRAKSD----GFPTILFFPAGN-KSFDPINVDVDRTVVALYKFLKKNASI 389
           A +D     +     D    GFPT+ FF A        +       V  L + L      
Sbjct: 69  AALDCAEETNSAVCRDFNIPGFPTVRFFXAFTXNGSGAVFPVAGADVQTLRERLIDALES 128

Query: 390 PFKIQKPTSAPKTEKPTSEPKAESSDIKESH 420
                 P   P       E     +   E +
Sbjct: 129 HHDTWPPACPPLEPAXLEEIDGFFARNNEEY 159

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens} Length = 244

 Score = 66.2 bits (161), Expect = 1e-12
 Identities = 29/206 (14%), Positives = 61/206 (29%), Gaps = 20/206 (9%)

Query: 184 KLLPVFEEAAKSFKGKLIFVYV-QMD-NEDVGKPVSEYFGITGEAP--KVLAYTGNDDAK 239
              P +   A+  K     +Y+  +D  E+    V   F I G  P  +       + + 
Sbjct: 47  AFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIPG-FPTVRFFXAFTXNGSG 105

Query: 240 KHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKD 299
                    +  ++    D LE     +  + P  E         +         +  + 
Sbjct: 106 AVFPVAGADVQTLRERLIDALESHHDTWPPACPPLEP------AXLEEIDGFFARNNEEY 159

Query: 300 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE-HHRAKSDGFPTI-LF 357
           + L          +       ++A  L     + + ++  T      +     FP+  L 
Sbjct: 160 LALIFEXGGSYLAR-------EVALDLSQHKGVAVRRVLNTEANVVRKFGVTDFPSCYLL 212

Query: 358 FPAGNKSFDPINVDVDRTVVALYKFL 383
           F  G+ S  P+ ++      A  + L
Sbjct: 213 FRNGSVSRVPVLMESRSFYTAYLQRL 238

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A Length = 133

 Score =  112 bits (281), Expect = 5e-30
 Identities = 30/132 (22%), Positives = 55/132 (41%), Gaps = 5/132 (3%)

Query: 150 LPLVTIFTRENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDN 209
            PL+     E       + I    +    + + ++L    +  A++ +G + F  +  D 
Sbjct: 5   SPLIGEIGPETYSDYMSAGIPLAYIFAETAEERKELSDKLKPIAEAQRGVINFGTI--DA 62

Query: 210 EDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILD--GELTLDKIKTFGEDFLEGKLKPF 267
           +  G        +  +     A       +K   D   E+T + IK F +DF+ GK++P 
Sbjct: 63  KAFGAHA-GNLNLKTDKFPAFAIQEVAKNQKFPFDQEKEITFEAIKAFVDDFVAGKIEPS 121

Query: 268 FKSDPIPETNDG 279
            KS+PIPE  +G
Sbjct: 122 IKSEPIPEKQEG 133

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A* Length = 519

 Score =  119 bits (299), Expect = 1e-29
 Identities = 30/138 (21%), Positives = 55/138 (39%), Gaps = 5/138 (3%)

Query: 276 TNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIV-I 334
           ++   + ++  ++    VL  S    +E +A WCGH  AF PT+ +LA  ++     + +
Sbjct: 9   SSSDPLTLLDADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNL 68

Query: 335 AKMDGTTNEHHRAKSD----GFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIP 390
           A +D     +     +    GFPT+ FF A  K+     +      V   +    +A   
Sbjct: 69  AVLDCAEETNSAVCREFNIAGFPTVRFFQAFTKNGSGATLPGAGANVQTLRMRLIDALES 128

Query: 391 FKIQKPTSAPKTEKPTSE 408
            +   P + P  E     
Sbjct: 129 HRDTWPPACPPLEPAKLN 146

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A* Length = 519

 Score = 55.3 bits (132), Expect = 2e-08
 Identities = 35/256 (13%), Positives = 80/256 (31%), Gaps = 25/256 (9%)

Query: 184 KLLPVFEEAAKSFKGKLIFVYV-QMD-NEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKH 241
              P ++E A   K     + +  +D  E+    V   F I G  P V  +         
Sbjct: 47  AFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREFNIAGF-PTVRFFQAFTKNGSG 105

Query: 242 ILD--GELTLDKIKTFGEDFLEGKLKPFFKSDPIPE-TNDGDVKIVVGNNFDEIVLDESK 298
                    +  ++    D LE     +  + P  E     D+      N  + +     
Sbjct: 106 ATLPGAGANVQTLRMRLIDALESHRDTWPPACPPLEPAKLNDIDGFFTRNKADYLA---- 161

Query: 299 DVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-HRAKSDGFPTI-L 356
            ++ E    + G     + +            ++ + ++  T ++  ++     FP+  L
Sbjct: 162 -LVFEREDSYLGREVTLDLSQY---------HAVAVRRVLNTESDLVNKFGVTDFPSCYL 211

Query: 357 FFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPFKIQKPTSAPKTEKPTSEPKAESSDI 416
               G+ S  P+ V+          +L+    +       T+ P T    +    + +D 
Sbjct: 212 LLRNGSVSRVPVLVESRSFYT---SYLRGLPGLTRDAPPTTATPVTADKIAPTVWKFADR 268

Query: 417 KESHESSSDKDVKDEL 432
            + + +  +  +   L
Sbjct: 269 SKIYMADLESALHYIL 284

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2 Length = 120

 Score =  108 bits (272), Expect = 6e-29
 Identities = 43/118 (36%), Positives = 58/118 (49%), Gaps = 6/118 (5%)

Query: 273 IPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDS- 331
            PE  D  V ++  +NF E  L   K +L+E YAPWCGHC+A  P Y K A  L+   S 
Sbjct: 2   APEEED-HVLVLRKSNFAE-ALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSE 59

Query: 332 IVIAKMDGTTNEHHRAKSD--GFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA 387
           I +AK+D T       +    G+PTI FF  G+ +  P      R    +  +LKK  
Sbjct: 60  IRLAKVDATEESDLAQQYGVRGYPTIKFFRNGDTA-SPKEYTAGREADDIVNWLKKRT 116

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 133

 Score =  109 bits (273), Expect = 8e-29
 Identities = 42/140 (30%), Positives = 62/140 (44%), Gaps = 15/140 (10%)

Query: 276 TNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLR--GVDSIV 333
            + GDV  +  ++FD+ VLD     ++E YAPWCGHC+  EP +   A  ++      + 
Sbjct: 4   GSSGDVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVK 63

Query: 334 IAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPF 391
           +A +D T N+    R    GFPTI  F  G     P++ D  RT   +        S   
Sbjct: 64  LAAVDATVNQVLASRYGIRGFPTIKIFQKGES---PVDYDGGRTRSDIVSRALDLFS--- 117

Query: 392 KIQKPTSAPKTEKPTSEPKA 411
                 +AP  E   S P +
Sbjct: 118 -----DNAPPPELLESGPSS 132

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus} Length = 130

 Score =  108 bits (272), Expect = 9e-29
 Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 6/114 (5%)

Query: 276 TNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIA 335
           ++  DV  +  +NF+  V+      L+E YAPWCGHCQ   P + K A  L+ V  + + 
Sbjct: 14  SSSDDVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDV--VKVG 71

Query: 336 KMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA 387
            ++   ++    +    GFPTI  F A      P +    RT  A+        
Sbjct: 72  AVNADKHQSLGGQYGVQGFPTIKIFGANKNK--PEDYQGGRTGEAIVDAALSAL 123

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 126

 Score =  108 bits (271), Expect = 1e-28
 Identities = 32/143 (22%), Positives = 52/143 (36%), Gaps = 21/143 (14%)

Query: 274 PETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIV 333
              + G+V+++   N+ E++     D ++E YAPWC  CQ  +P +   A+    ++ + 
Sbjct: 2   SSGSSGNVRVITDENWRELL---EGDWMIEFYAPWCPACQNLQPEWESFAEWGEDLE-VN 57

Query: 334 IAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPF 391
           IAK+D T       R   +  PTI     G            RT      F+        
Sbjct: 58  IAKVDVTEQPGLSGRFIINALPTIYHCKDGE----FRRYQGPRTKKDFINFISDK----- 108

Query: 392 KIQKPTSAPKTEKPTSEPKAESS 414
                      E  +S     SS
Sbjct: 109 ------EWKSIEPVSSWFSGPSS 125

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A Length = 241

 Score =  108 bits (270), Expect = 3e-27
 Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 8/142 (5%)

Query: 266 PFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKH 325
           P    D +    +  V ++   NFD  V  +   VLLE YAPWCGHC+ F P Y K+A  
Sbjct: 2   PLGSEDDLEVKEENGVLVLNDANFDNFV-ADKDTVLLEFYAPWCGHCKQFAPEYEKIANI 60

Query: 326 LRGVDS-IVIAKMDGTTNEHHRAKSD--GFPTILFFPAGNKSFDPINVDVDRTVVALYKF 382
           L+  D  I +AK+D T+     ++ D  G+PTI     G      ++ +  RT   +   
Sbjct: 61  LKDKDPPIPVAKIDATSASVLASRFDVSGYPTIKILKKGQ----AVDYEGSRTQEEIVAK 116

Query: 383 LKKNASIPFKIQKPTSAPKTEK 404
           +++ +   +      +   T++
Sbjct: 117 VREVSQPDWTPPPEVTLVLTKE 138

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A Length = 241

 Score =  102 bits (256), Expect = 3e-25
 Identities = 47/207 (22%), Positives = 83/207 (40%), Gaps = 22/207 (10%)

Query: 184 KLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHIL 243
           +  P +E+ A   K K   + V   +      ++  F ++G  P +         +    
Sbjct: 49  QFAPEYEKIANILKDKDPPIPVAKIDATSASVLASRFDVSG-YPTIKILKKG---QAVDY 104

Query: 244 DGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLE 303
           +G  T ++I     +  +          P          ++   NFDE+V +++  +L+E
Sbjct: 105 EGSRTQEEIVAKVREVSQ----------PDWTPPPEVTLVLTKENFDEVV-NDADIILVE 153

Query: 304 IYAPWCGHCQAFEPTYNKLAKHLRGVDS-IVIAKMDGTTNEH--HRAKSDGFPTILFFPA 360
            YAPWCGHC+   P Y K AK L      I +AK+D T       R    G+PT+  F  
Sbjct: 154 FYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETDLAKRFDVSGYPTLKIFRK 213

Query: 361 GNKSFDPINVDVDRTVVALYKFLKKNA 387
           G     P + +  R    +  ++ + +
Sbjct: 214 GR----PYDYNGPREKYGIVDYMIEQS 236

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A Length = 241

 Score = 44.1 bits (104), Expect = 3e-05
 Identities = 20/139 (14%), Positives = 48/139 (34%), Gaps = 22/139 (15%)

Query: 32  SKDAIVTWIKKKIGPGIYN------ITTLDEAERVLTSETKVVLGYLNSLVGSES----- 80
           +++ IV  +++   P          + T +  + V+     +++ +     G        
Sbjct: 109 TQEEIVAKVREVSQPDWTPPPEVTLVLTKENFDEVVNDADIILVEFYAPWCGHCKKLAPE 168

Query: 81  --EVLADASRLEDDVNFYQ---TTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFADGK 135
             +   + S+    +   +   T   D+AK F +      P L + +K      Y  +G 
Sbjct: 169 YEKAAKELSKRSPPIPLAKVDATAETDLAKRFDVSG---YPTLKIFRKG-RPYDY--NGP 222

Query: 136 FDKSTIADFVFSNKLPLVT 154
            +K  I D++        +
Sbjct: 223 REKYGIVDYMIEQSGAAAS 241

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A Length = 111

 Score =  103 bits (258), Expect = 6e-27
 Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 8/113 (7%)

Query: 278 DGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDS-IVIAK 336
              V  +  NNFD+ + +      ++ YAPWCGHC+   PT+ +L+K      + + IA+
Sbjct: 4   GSTVLALTENNFDDTIAE--GITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAE 61

Query: 337 MDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA 387
           +D T   +   +    G+PT+L F  G K  +       R + +L++F+   A
Sbjct: 62  VDCTAERNICSKYSVRGYPTLLLFRGGKKVSE---HSGGRDLDSLHRFVLSQA 111

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A Length = 240

 Score =  104 bits (261), Expect = 5e-26
 Identities = 23/162 (14%), Positives = 56/162 (34%), Gaps = 16/162 (9%)

Query: 280 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG 339
               +    F +++  +SK VL++    +    +     + +LA++    D +++A++  
Sbjct: 6   GALPLDTVTFYKVI-PKSKFVLVKFDTQYPYGEKQ--DEFKRLAENSASSDDLLVAEVGI 62

Query: 340 TTN---------EHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIP 390
           +           E ++   + +P    F  G+   +P+       V A+ ++LK      
Sbjct: 63  SDYGDKLNMELSEKYKLDKESYPVFYLFRDGDFE-NPVPYTGAVKVGAIQRWLKGQGV-- 119

Query: 391 FKIQKPTSAPKTEKPTSEPKAESSDIKESHESSSDKDVKDEL 432
             +  P   P  +    E    S            +D    +
Sbjct: 120 -YLGMPGCLPVYDALAGEFIRASGVEARQALLKQGQDNLSSV 160

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae} Length = 298

 Score = 98.3 bits (244), Expect = 3e-23
 Identities = 32/157 (20%), Positives = 53/157 (33%), Gaps = 23/157 (14%)

Query: 276 TNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIA 335
            +D  +  +   +FD+ + + +   L+E YAPWCGHC+    T+ K AK L GV  +   
Sbjct: 14  DSDPHISELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAV 73

Query: 336 KMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDV--------------DRTVVAL 379
             D   N+    +   +GFPT++ F            +                RT+  +
Sbjct: 74  NCDLNKNKALCAKYDVNGFPTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPI 133

Query: 380 YKFLKKNASIPFKIQKPTSAPKTEKPTSEPKAESSDI 416
             F            +          T       S  
Sbjct: 134 VDFSLSRI-------RSYVKKFVRIDTLGSLLRKSPK 163

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae} Length = 298

 Score = 74.4 bits (182), Expect = 5e-15
 Identities = 20/164 (12%), Positives = 52/164 (31%), Gaps = 22/164 (13%)

Query: 32  SKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNSLVGSESEVLADASRLED 91
           +   IV +   +I   +     +D    +L    K+ +   +          + A     
Sbjct: 129 TLAPIVDFSLSRIRSYVKKFVRIDTLGSLLRKSPKLSVVLFSKQDKISPVYKSIALDWLG 188

Query: 92  DVNFYQTTNPDVAKIFHL--------------------DSKVNRPALVMVKKETEKISYF 131
             +FY  +N  + ++  +                      + ++  LV+   + +K   +
Sbjct: 189 KFDFYSISNKKLKQLTDMNPTYEKTPEIFKYLQKVIPEQRQSDKSKLVVFDADKDKFWEY 248

Query: 132 ADGKFDKSTIADFV--FSNKLPLVTIFTRENAPSVFESPIKNQL 173
                +K+ I+ F+    +  P    F+R +    +    K  +
Sbjct: 249 EGNSINKNDISKFLRDTFSITPNEGPFSRRSEYIAYLKTGKKPI 292

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae} Length = 298

 Score = 67.1 bits (163), Expect = 1e-12
 Identities = 45/265 (16%), Positives = 78/265 (29%), Gaps = 44/265 (16%)

Query: 184 KLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITG--------------EAPKV 229
           KL   F +AAK   G +    V  D  +  K +   + + G                P  
Sbjct: 52  KLSSTFRKAAKRLDGVVQVAAVNCD-LNKNKALCAKYDVNGFPTLMVFRPPKIDLSKPID 110

Query: 230 LAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVG--- 286
            A          +  G  TL  I  F    +   +K F + D +        K+ V    
Sbjct: 111 NAKKSFSAHANEVYSGARTLAPIVDFSLSRIRSYVKKFVRIDTLGSLLRKSPKLSVVLFS 170

Query: 287 ------NNFDEIVLDESKDVLLEIYAPWCGHCQA---FEPTYNKLAKHLRGVDSIVIAKM 337
                   +  I LD       + Y+      +      PTY K  +  + +  ++  + 
Sbjct: 171 KQDKISPVYKSIALDWLGKF--DFYSISNKKLKQLTDMNPTYEKTPEIFKYLQKVIPEQR 228

Query: 338 DGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPFKIQKPT 397
                            ++ F A    F     +       + KFL+   S     + P 
Sbjct: 229 QSDK-----------SKLVVFDADKDKFWEYEGN-SINKNDISKFLRDTFS-ITPNEGPF 275

Query: 398 SAPKTEKPTSEPKAESSDIKESHES 422
           S  +  +  +  K     IK++H S
Sbjct: 276 S--RRSEYIAYLKTGKKPIKKNHSS 298

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus} Length = 122

 Score = 87.8 bits (218), Expect = 3e-21
 Identities = 23/113 (20%), Positives = 42/113 (37%), Gaps = 7/113 (6%)

Query: 280 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG 339
               +    F+E VL      +++ YAPWCG CQ F P +  LA+ ++G   +   K+D 
Sbjct: 4   ASIDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKG--KVRAGKVDC 61

Query: 340 TTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVD--RTVVALYKFLKKNAS 388
                   +A    +P++  +         I  +    R    +   +     
Sbjct: 62  QAYPQTCQKAGIKAYPSVKLYQYERAK-KSIWEEQINSRDAKTIAALIYGKLE 113

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A* Length = 470

 Score = 87.0 bits (214), Expect = 1e-18
 Identities = 18/107 (16%), Positives = 37/107 (34%), Gaps = 11/107 (10%)

Query: 269 KSDPIPE--TNDGDVKIVVGNNFDEIVLDESKD-VLLEIYAPWCGHCQAFEPTYNKLAKH 325
              P P     D  V  + G++F  +         ++  Y   CG C+ +  T++K A  
Sbjct: 11  TGSPRPGLFHLDSSVVDLSGDDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGG 70

Query: 326 LRG------VDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKS 364
           L+       +     A ++  +      +   +  P + FF   +  
Sbjct: 71  LKVEHGKDALQIATAAAVNCASEVDLCRKYDINFVPRLFFFYPRDSC 117

>2l4c_A Endoplasmic reticulum resident protein 27; ERP27, PDI, B domain, peptide binding; NMR {Homo sapiens} Length = 124

 Score = 75.8 bits (186), Expect = 7e-17
 Identities = 18/125 (14%), Positives = 42/125 (33%), Gaps = 11/125 (8%)

Query: 33  KDAIVTWIKKKIGPGIYN----ITTLDEAERVLTSETKVVLGYLNSLVGSESEVLADASR 88
               +   K   GPG       +T +  A   + +    V+G+   L      +L    +
Sbjct: 4   HHHHMEVEKSSDGPGAAQEPTWLTDVPAAMEFIAATEVAVIGFFQDLEIPAVPILHSMVQ 63

Query: 89  LEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKISYF---ADGKFDKSTIADFV 145
               V+F  +T+ +V   +++        + + +    +            D + ++ F+
Sbjct: 64  KFPGVSFGISTDSEVLTHYNITG----NTICLFRLVDNEQLNLEDEDIESIDATKLSRFI 119

Query: 146 FSNKL 150
             N L
Sbjct: 120 EINSL 124

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A Length = 248

 Score = 67.0 bits (163), Expect = 7e-13
 Identities = 16/110 (14%), Positives = 34/110 (30%), Gaps = 13/110 (11%)

Query: 288 NFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV-DSIVIAKMDGTTNEHHR 346
           +F++ V +     +++         +     +   +K        ++IA +         
Sbjct: 25  SFEKTV-ERFPYSVVKFDIASPYGEKH--EAFTAFSKSAHKATKDLLIATVGVKDYGELE 81

Query: 347 AK---------SDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA 387
            K            FP+I  F      +  +   VD T+  L  F+  N 
Sbjct: 82  NKALGDRYKVDDKNFPSIFLFKGNADEYVQLPSHVDVTLDNLKAFVSANT 131

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A Length = 164

 Score = 60.8 bits (147), Expect = 3e-11
 Identities = 18/99 (18%), Positives = 39/99 (39%), Gaps = 4/99 (4%)

Query: 291 EIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN---EHHRA 347
           +        +++ I+  WCG C+A +P + +  +      + V+  ++       E    
Sbjct: 40  KEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSP 99

Query: 348 KSDGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKK 385
                P ILF  P+G    + IN + + +    Y   ++
Sbjct: 100 DGGYIPRILFLDPSGKVHPEIINENGNPSYKYFYVSAEQ 138

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis} Length = 121

 Score = 57.8 bits (140), Expect = 1e-10
 Identities = 26/116 (22%), Positives = 49/116 (42%), Gaps = 15/116 (12%)

Query: 279 GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD 338
           G V+++   +  + V    K V+++ +A WCG C+   P + K++    G D +   K+D
Sbjct: 15  GSVQVISSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAG-DKVGFYKVD 73

Query: 339 GTTNEHHRAKSD--GFPTILFFPAGNKSFDPINVDVDRTVVA----LYKFLKKNAS 388
                    +      PT +FF  G K        +D  V A    L   + ++++
Sbjct: 74  VDEQSQIAQEVGIRAMPTFVFFKNGQK--------IDTVVGADPSKLQAAITQHSA 121

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 137

 Score = 58.3 bits (141), Expect = 1e-10
 Identities = 22/113 (19%), Positives = 37/113 (32%), Gaps = 18/113 (15%)

Query: 278 DGDVKIVVGNNFDEIVL-DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAK 336
            G +K       DE +  D+    ++E +A W   CQ+F P Y  L+        +   K
Sbjct: 6   SGYIKYFNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNC-TGLNFGK 64

Query: 337 MDGTTNEHHRAK--------SDGFPTILFFPAGNKSFDPINVDVDRTVVALYK 381
           +D         +        +   PT++ F  G +          R      K
Sbjct: 65  VDVGRYTDVSTRYKVSTSPLTKQLPTLILFQGGKE--------AMRRPQIDKK 109

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus} Length = 155

 Score = 58.6 bits (142), Expect = 1e-10
 Identities = 20/101 (19%), Positives = 36/101 (35%), Gaps = 12/101 (11%)

Query: 283 IVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN 342
             +          +   +L++ +APWCG C+   P +   A  L G   + +AK+D   +
Sbjct: 50  AGIDPAILARAERDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAG--QVRLAKIDTQAH 107

Query: 343 EHHRAKSD--GFPTILFFPAGNKSFDPINVDVDRTVVALYK 381
                +    G P  + F  G +        + R   A   
Sbjct: 108 PAVAGRHRIQGIPAFILFHKGRE--------LARAAGARPA 140

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei} Length = 140

 Score = 57.4 bits (139), Expect = 2e-10
 Identities = 28/107 (26%), Positives = 42/107 (39%), Gaps = 12/107 (11%)

Query: 277 NDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAK 336
           N   +       + + V D  K V++  Y+P C +C+A EP + + AK      S V  +
Sbjct: 4   NGSSIIEFEDMTWSQQVEDSKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGS--SAVFGR 61

Query: 337 MDGTTNEHHRAKSD--GFPTILFFPAGNKSFDPINVDVDRTVVALYK 381
           ++  TN     K    G PT  FF  G          V   V  +Y 
Sbjct: 62  INIATNPWTAEKYGVQGTPTFKFFCHGRP--------VWEQVGQIYP 100

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis} Length = 148

 Score = 57.8 bits (140), Expect = 2e-10
 Identities = 23/106 (21%), Positives = 44/106 (41%), Gaps = 13/106 (12%)

Query: 278 DGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKM 337
           DG+V        D+ +L +   ++++ +APWCG C++F P + + A    G   +   K+
Sbjct: 37  DGEVINATAETLDK-LLQDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAG--KVRFVKV 93

Query: 338 DGTTNEHHRAKSD--GFPTILFFPAGNKSFDPINVDVDRTVVALYK 381
           +         +      PTI+ +  G          +D    A+ K
Sbjct: 94  NTEAEPALSTRFRIRSIPTIMLYRNGKM--------IDMLNGAVPK 131

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210

 Score = 59.1 bits (143), Expect = 2e-10
 Identities = 26/134 (19%), Positives = 55/134 (41%), Gaps = 10/134 (7%)

Query: 267 FFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHL 326
           +++ D     +D ++  +    FD  V +  +   +  Y+P C HC    PT+ + AK +
Sbjct: 85  YYRYDFGIYDDDPEIITLERREFDAAV-NSGELWFVNFYSPGCSHCHDLAPTWREFAKEV 143

Query: 327 RGVDSI--VIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLK 384
            G+  I  V    D          S  +P++  F +G      +  + DR+  +L  F  
Sbjct: 144 DGLLRIGAVNCGDDRMLCRMKGVNS--YPSLFIFRSGM---AAVKYNGDRSKESLVAFAM 198

Query: 385 KNASIPFKIQKPTS 398
           +   +   + + ++
Sbjct: 199 Q--HVRSTVTELST 210

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens} Length = 126

 Score = 55.9 bits (135), Expect = 6e-10
 Identities = 14/80 (17%), Positives = 27/80 (33%), Gaps = 2/80 (2%)

Query: 289 FDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAK 348
            +     E    ++      C +C   +   + ++K   G  +I  A+++   N     K
Sbjct: 18  ENLEEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREGKFNIYYARLEEEKNIDLAYK 77

Query: 349 SD--GFPTILFFPAGNKSFD 366
            D    PT +F       F 
Sbjct: 78  YDANIVPTTVFLDKEGNKFY 97

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus} Length = 140

 Score = 55.1 bits (133), Expect = 2e-09
 Identities = 23/105 (21%), Positives = 40/105 (38%), Gaps = 13/105 (12%)

Query: 279 GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD 338
             V       F + V   +   L++ +APWCG C+   P   +LA+   G   + + K++
Sbjct: 33  PWVVEADEKGFAQEVA-GAPLTLVDFFAPWCGPCRLVSPILEELARDHAG--RLKVVKVN 89

Query: 339 GTTNEHHRAKSD--GFPTILFFPAGNKSFDPINVDVDRTVVALYK 381
              +    A+      PT++ F  G          V   V A  +
Sbjct: 90  VDEHPGLAARYGVRSVPTLVLFRRGAP--------VATWVGASPR 126

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus} Length = 136

 Score = 54.8 bits (132), Expect = 2e-09
 Identities = 27/100 (27%), Positives = 41/100 (41%), Gaps = 7/100 (7%)

Query: 269 KSDPIPETNDGDVKIVVGN---NFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKH 325
            +  +      +    V N   N +E   +  K  +++ YA WCG C+   P  ++LAK 
Sbjct: 7   GNGKVIHLTKAEFLAKVYNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKE 66

Query: 326 LRGVDSIVIAKMDGTTNEHHRAKSD--GFPTILFFPAGNK 363
             G   IVI K+D    +           P+ILF P   K
Sbjct: 67  YDG--QIVIYKVDTEKEQELAGAFGIRSIPSILFIPMEGK 104

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A Length = 134

 Score = 54.0 bits (130), Expect = 3e-09
 Identities = 24/104 (23%), Positives = 38/104 (36%), Gaps = 6/104 (5%)

Query: 291 EIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN-EHHRA-- 347
            +V  + K V+L++YA WC  C+ FE       +  + +   V+ + + T N     A  
Sbjct: 25  ALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALL 84

Query: 348 ---KSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNAS 388
                 G PTILFF    +      V            L+    
Sbjct: 85  KHLNVLGLPTILFFDGQGQEHPQARVTGFMDAETFSAHLRDRQP 128

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens} Length = 118

 Score = 52.8 bits (127), Expect = 6e-09
 Identities = 15/86 (17%), Positives = 30/86 (34%), Gaps = 6/86 (6%)

Query: 279 GDVKIVVGNNFDEIVLDESKD--VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAK 336
           G+++ + GN +   V +  +D  V++ +Y      C       + LA+           K
Sbjct: 3   GELREISGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFPET---KFVK 59

Query: 337 MDGTTNEHHRAKSDGFPTILFFPAGN 362
                +       +  PTI  +  G 
Sbjct: 60  AI-VNSCIQHYHDNCLPTIFVYKNGQ 84

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix} Length = 135

 Score = 52.9 bits (127), Expect = 7e-09
 Identities = 21/106 (19%), Positives = 42/106 (39%), Gaps = 18/106 (16%)

Query: 278 DGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRG-----VDSI 332
           DG +  +    F +++     D +L +Y+  C HC    P   + +K +       +   
Sbjct: 15  DGRLIYITPEEFRQLL---QGDAILAVYSKTCPHCHRDWPQLIQASKEVDVPIVMFIWGS 71

Query: 333 VIAKMDGTTNEHHRAKSD--GFPTILFFPAGNKSFDPINVDVDRTV 376
           +I + + +       K+   G PT++F+  G          VD+ V
Sbjct: 72  LIGERELSAARLEMNKAGVEGTPTLVFYKEGRI--------VDKLV 109

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis} Length = 118

 Score = 52.4 bits (126), Expect = 9e-09
 Identities = 22/119 (18%), Positives = 38/119 (31%), Gaps = 11/119 (9%)

Query: 270 SDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV 329
           SDPI   N               + +    VL++ +A WCG CQ        +A+     
Sbjct: 2   SDPIVHFNGTH------EALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEAN--- 52

Query: 330 DSIVIAKMDGTTNEHHRAKSD--GFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKN 386
             +   K+D   N +          P + F          ++  V   V  +   ++K 
Sbjct: 53  KDVTFIKVDVDKNGNAADAYGVSSIPALFFVKKEGNEIKTLDQFVGADVSRIKADIEKF 111

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C Length = 105

 Score = 51.9 bits (125), Expect = 9e-09
 Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 4/86 (4%)

Query: 280 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG 339
           +V+ V  +++ E VL+    V+++ +APWCG C+   P  ++LAK   G   I + K++ 
Sbjct: 1   EVQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSG--KIAVYKLNT 58

Query: 340 TTNEHHRAKSD--GFPTILFFPAGNK 363
                   + +    PT+LFF  G +
Sbjct: 59  DEAPGIATQYNIRSIPTVLFFKNGER 84

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} Length = 111

 Score = 51.5 bits (124), Expect = 1e-08
 Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 4/84 (4%)

Query: 281 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 340
           ++ +  N F++++ DE K  L+      C  CQ   P   +L  +     S     +D  
Sbjct: 6   LEKLDTNTFEQLIYDEGKACLVMFSRKNCHVCQKVTPVLEELRLNYEE--SFGFYYVDVE 63

Query: 341 TNEHHRAKSD--GFPTILFFPAGN 362
             +    +    G P IL+F  G 
Sbjct: 64  EEKTLFQRFSLKGVPQILYFKDGE 87

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum} Length = 128

 Score = 52.0 bits (125), Expect = 2e-08
 Identities = 23/110 (20%), Positives = 38/110 (34%), Gaps = 17/110 (15%)

Query: 284 VVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE 343
             G+N    V  ++  ++L  +A WC  C       +KL K+      I + K+D   NE
Sbjct: 29  QNGSNIINGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGK--RIYLLKVDLDKNE 86

Query: 344 HHRAKSD--GFPTILFFPAGNKSFDPINVDVDRTVVALYK-----FLKKN 386
               K      PTI+               + R    +        +KK+
Sbjct: 87  SLARKFSVKSLPTIILLKNKTM--------LARKDHFVSSNDLIALIKKH 128

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A Length = 153

 Score = 52.2 bits (125), Expect = 2e-08
 Identities = 32/158 (20%), Positives = 60/158 (37%), Gaps = 23/158 (14%)

Query: 275 ETNDGDVKIVV-GNNFDEIVLDES-KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSI 332
           E     V+ V     F+E++  ++   +++  +APW   C        +LAK L     +
Sbjct: 8   EAAVAAVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKEL---PQV 64

Query: 333 VIAKMD----GTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVA----LYKFLK 384
              K++       +E +   S   PT LFF    K        +DR   A    L K ++
Sbjct: 65  SFVKLEAEGVPEVSEKYEISS--VPTFLFFKNSQK--------IDRLDGAHAPELTKKVQ 114

Query: 385 KNASIPFKIQKPTSAPKTEKPTSEPKAESSDIKESHES 422
           ++AS    +        T+  +S     ++ ++  H  
Sbjct: 115 RHASSGSFLPSAKVKVDTDPNSSSVDKLAAALEHHHHH 152

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A Length = 119

 Score = 51.2 bits (123), Expect = 2e-08
 Identities = 29/124 (23%), Positives = 49/124 (39%), Gaps = 17/124 (13%)

Query: 270 SDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV 329
           S            I  G +F + V++    V+++ +A WCG C+   P   K+     G 
Sbjct: 4   SHHHHHHGSTTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHG- 62

Query: 330 DSIVIAKMDGTTNEHHRAKSD--GFPTILFFPAGNKSFDPINVDVDRTVVALYK-----F 382
             +V+AK+D   +     + +    PT+L    G+         VD+ V    +     F
Sbjct: 63  -KVVMAKVDIDDHTDLAIEYEVSAVPTVLAMKNGDV--------VDKFVGIKDEDQLEAF 113

Query: 383 LKKN 386
           LKK 
Sbjct: 114 LKKL 117

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A Length = 111

 Score = 50.8 bits (122), Expect = 2e-08
 Identities = 30/111 (27%), Positives = 41/111 (36%), Gaps = 15/111 (13%)

Query: 279 GDVKIVVGNNFDEIVLDES-KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKM 337
           G V  V  + F  IV     K V+L+++  WCG  +A  P Y KLA+    V   +  K+
Sbjct: 5   GKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLDV---IFLKL 61

Query: 338 DGTTNEHHRAKSDG---FPTILFFPAGNKSFDPINVDVDRTVVALYKFLKK 385
           D        AK  G    PT       +         V     A Y  L +
Sbjct: 62  DCNQENKTLAKELGIRVVPTFKILKENSV--------VGEVTGAKYDKLLE 104

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus} Length = 135

 Score = 51.4 bits (123), Expect = 3e-08
 Identities = 22/130 (16%), Positives = 45/130 (34%), Gaps = 11/130 (8%)

Query: 279 GDVKIVVGNNFDEIVLDESKD--VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAK 336
           G+++ + GN +   V +  KD  V++ +Y      C       + LA+           K
Sbjct: 10  GELREISGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKFPET---KFVK 66

Query: 337 MDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVD----VDRTVVALYKFLKKNASIPFK 392
                +       +  PTI  +  G      I +     ++  +  L   L +  +I   
Sbjct: 67  AI-VNSCIEHYHDNCLPTIFVYKNGQIEGKFIGIIECGGINLKLEELEWKLSEVGAIQSD 125

Query: 393 IQKPTSAPKT 402
           + +  S P +
Sbjct: 126 L-EENSGPSS 134

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti} Length = 107

 Score = 50.7 bits (122), Expect = 3e-08
 Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 12/95 (12%)

Query: 270 SDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV 329
           S+     +D        ++FD+ VL  S  VL++ +A WCG C+   P   ++ K   G 
Sbjct: 1   SEHTLAVSD--------SSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAG- 51

Query: 330 DSIVIAKMDGTTNEHHRAKSD--GFPTILFFPAGN 362
             + +AK++   N            PT++    G 
Sbjct: 52  -KVTVAKVNIDDNPETPNAYQVRSIPTLMLVRDGK 85

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1 Length = 124

 Score = 50.9 bits (122), Expect = 4e-08
 Identities = 31/111 (27%), Positives = 42/111 (37%), Gaps = 15/111 (13%)

Query: 279 GDVKIVVGNNFDEIVLDES-KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKM 337
           G V  V  + F  IV     K V+L+++  WCG C+A  P Y KLA+    V   +  K+
Sbjct: 18  GKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDV---IFLKL 74

Query: 338 DGTTNEHHRAKSDG---FPTILFFPAGNKSFDPINVDVDRTVVALYKFLKK 385
           D        AK  G    PT       +         V     A Y  L +
Sbjct: 75  DCNQENKTLAKELGIRVVPTFKILKENSV--------VGEVTGAKYDKLLE 117

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor} Length = 112

 Score = 50.4 bits (121), Expect = 4e-08
 Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 4/86 (4%)

Query: 279 GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD 338
           G +K V  ++F++ VL   K VL++ +A WCG C+   P+   +A        I I K++
Sbjct: 5   GTLKHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGD--KIEIVKLN 62

Query: 339 GTTNEHHRAKSD--GFPTILFFPAGN 362
              N    AK      PT+  +  G 
Sbjct: 63  IDENPGTAAKYGVMSIPTLNVYQGGE 88

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A Length = 110

 Score = 50.4 bits (121), Expect = 4e-08
 Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 8/84 (9%)

Query: 281 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 340
           ++ +          +   D ++  +   C HC+  E   +K       V    I+ +D +
Sbjct: 4   IRDITTEAGMA-HFEGLSDAIVFFHKNLCPHCKNMEKVLDKFGARAPQV---AISSVD-S 58

Query: 341 TNEHHRAKSDGF---PTILFFPAG 361
                  K  GF   PT++F   G
Sbjct: 59  EARPELMKELGFERVPTLVFIRDG 82

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} Length = 109

 Score = 50.0 bits (120), Expect = 4e-08
 Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 13/103 (12%)

Query: 281 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 340
             ++   NFDE V+  +K VL++ +A WC  C  +EP Y K+A+  +G    V  +++  
Sbjct: 6   TLVLTEENFDE-VIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKG--KAVFGRLNVD 62

Query: 341 TNEHHRAKSD--GFPTILFFPAGNKSFDPINVDVDRTVVALYK 381
            N+    K      PT L F  G          VD  V A+ +
Sbjct: 63  ENQKIADKYSVLNIPTTLIFVNGQL--------VDSLVGAVDE 97

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli} Length = 128

 Score = 50.9 bits (122), Expect = 4e-08
 Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 5/100 (5%)

Query: 266 PFFKSDPIPETNDGD-VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAK 324
               S  +P  +  D +  +  ++FD  VL     +L++ +A WCG  +   P  +++A 
Sbjct: 8   HHHSSGLVPRGSHSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIAD 67

Query: 325 HLRGVDSIVIAKMDGTTNEHHRAKSD--GFPTILFFPAGN 362
             +G   + +AK++   N     K    G PT+L F  G 
Sbjct: 68  EYQG--KLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGE 105

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct} Length = 106

 Score = 49.6 bits (119), Expect = 6e-08
 Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 4/85 (4%)

Query: 281 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 340
           V  V   NF++ VL   K VL++ +APWCG C+   P   +LAK   G   + + K++  
Sbjct: 3   VIEVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEG--KVKVVKVNVD 60

Query: 341 TNEHHRAKSD--GFPTILFFPAGNK 363
            N +  A+      PT+L F  G  
Sbjct: 61  ENPNTAAQYGIRSIPTLLLFKNGQV 85

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A Length = 112

 Score = 49.6 bits (119), Expect = 6e-08
 Identities = 24/120 (20%), Positives = 44/120 (36%), Gaps = 20/120 (16%)

Query: 279 GDVKIVVG-NNFDEIVL---DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVI 334
           G V ++     +D  +    +E K ++++  A WCG C+   P +  L+        ++ 
Sbjct: 2   GSVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYA--GKVIF 59

Query: 335 AKMDGTTNEHHRAKSD--GFPTILFFPAGNKSFDPINVDVDRTVVA----LYKFLKKNAS 388
            K+D          +     PT   +  G K         D  V A    L   + K+A+
Sbjct: 60  LKVDVDAVAAVAEAAGITAMPTFHVYKDGVK--------ADDLVGASQDKLKALVAKHAA 111

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1 Length = 115

 Score = 49.6 bits (119), Expect = 6e-08
 Identities = 26/124 (20%), Positives = 38/124 (30%), Gaps = 25/124 (20%)

Query: 270 SDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV 329
           S  +    D          F+  VL   + VL+  +A WCG CQ   P  N  A      
Sbjct: 6   SKGVITITD--------AEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSD- 56

Query: 330 DSIVIAKMDGTTNEHHRAKSD--GFPTILFFPAGNKSFDPINVDVDRTVVA-----LYKF 382
             + + K++   N     K    G P +                +D T        L  F
Sbjct: 57  -RLKVVKLEIDPNPTTVKKYKVEGVPALRLVKGEQI--------LDSTEGVISKDKLLSF 107

Query: 383 LKKN 386
           L  +
Sbjct: 108 LDTH 111

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ... Length = 108

 Score = 49.6 bits (119), Expect = 7e-08
 Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 12/95 (12%)

Query: 270 SDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV 329
           SD I    D        ++FD  VL     +L++ +A WCG C+   P  +++A   +G 
Sbjct: 1   SDKIIHLTD--------DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG- 51

Query: 330 DSIVIAKMDGTTNEHHRAKSD--GFPTILFFPAGN 362
             + +AK++   N     K    G PT+L F  G 
Sbjct: 52  -KLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGE 85

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1 Length = 107

 Score = 49.6 bits (119), Expect = 7e-08
 Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 4/85 (4%)

Query: 281 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 340
              V  + F  +VL+ S  VL++ +APWCG C+   P  +++A   +    +   K++  
Sbjct: 3   AGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKD--KLKCVKLNTD 60

Query: 341 TNEHHRAKSD--GFPTILFFPAGNK 363
            + +  ++      PTI+ F  G K
Sbjct: 61  ESPNVASEYGIRSIPTIMVFKGGKK 85

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1 Length = 125

 Score = 49.3 bits (118), Expect = 1e-07
 Identities = 23/114 (20%), Positives = 36/114 (31%), Gaps = 5/114 (4%)

Query: 275 ETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVI 334
                 V  V        ++ E    +    A WCG C+  E    K+A       ++  
Sbjct: 15  RARYPSVVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEF---PTVKF 71

Query: 335 AKMDGTTNEHHRAKSD--GFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKN 386
           AK+D   N    +K      PT +   +G      I  +       L   +K N
Sbjct: 72  AKVDADNNSEIVSKCRVLQLPTFIIARSGKMLGHVIGANPGMLRQKLRDIIKDN 125

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus} Length = 105

 Score = 48.4 bits (116), Expect = 1e-07
 Identities = 13/74 (17%), Positives = 26/74 (35%), Gaps = 6/74 (8%)

Query: 287 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 346
                  ++E + VLL I    CG C       N + ++    + +   ++     +   
Sbjct: 9   EELAT-YIEEQQLVLLFIKTENCGVCDVMLRKVNYVLENY---NYVEKIEILLQDMQEIA 64

Query: 347 AKSD--GFPTILFF 358
            +      PT+L F
Sbjct: 65  GRYAVFTGPTVLLF 78

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa} Length = 133

 Score = 49.1 bits (117), Expect = 2e-07
 Identities = 14/76 (18%), Positives = 23/76 (30%), Gaps = 9/76 (11%)

Query: 296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRA-------- 347
             K  LL   A WC  C+A + +               + K+D    + +          
Sbjct: 28  THKPTLLVFGANWCTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFDRNLELSQAYGDP 87

Query: 348 KSDGFPTILFF-PAGN 362
             DG P ++     G 
Sbjct: 88  IQDGIPAVVVVNSDGK 103

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A Length = 121

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 4/96 (4%)

Query: 269 KSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRG 328
           +   + ++       V   +F   VL  +K VL++ +A WCG C+   P   ++A     
Sbjct: 2   RWGSMTDSEKSATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERAT 61

Query: 329 VDSIVIAKMDGTTNEHHRAKSD--GFPTILFFPAGN 362
              + +AK+D  TN            PT++ F  G 
Sbjct: 62  --DLTVAKLDVDTNPETARNFQVVSIPTLILFKDGQ 95

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B Length = 109

 Score = 48.1 bits (115), Expect = 2e-07
 Identities = 25/113 (22%), Positives = 44/113 (38%), Gaps = 18/113 (15%)

Query: 281 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 340
            +    + FD   + + K V+++ YA WCG C+   P   K ++           K+D  
Sbjct: 9   TQFKTASEFDS-AIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQY---PQADFYKLDVD 64

Query: 341 TNEHHRAKSD--GFPTILFFPAGNKSFDPINVDVDRTV----VALYKFLKKNA 387
                  K++    PT+L F  G +        V + V     A+ + +  NA
Sbjct: 65  ELGDVAQKNEVSAMPTLLLFKNGKE--------VAKVVGANPAAIKQAIAANA 109

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron} Length = 130

 Score = 48.6 bits (116), Expect = 2e-07
 Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 10/90 (11%)

Query: 288 NFDEIVL---DESKDVLLEIYAPWCGHCQAFEPT--YNKLAKHLRGVDSIVIAKMDGTTN 342
           +F E +     E K + ++ +  WCG C+        + L          V  KMD    
Sbjct: 15  SFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFN-RHFVNLKMDMEKG 73

Query: 343 EHHRAKSD----GFPTILFFPAGNKSFDPI 368
           E    +       +PT+LF  +  +    +
Sbjct: 74  EGVELRKKYGVHAYPTLLFINSSGEVVYRL 103

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, alternative splicing, FBP interacting repressor, RRM, electron transport; 2.20A {Escherichia coli O157} Length = 222

 Score = 50.2 bits (120), Expect = 3e-07
 Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 12/95 (12%)

Query: 270 SDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV 329
           SD I    D        ++FD  VL     +L++ +A WCG C+   P  +++A   +G 
Sbjct: 11  SDKIIHLTD--------DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG- 61

Query: 330 DSIVIAKMDGTTNEHHRAKSD--GFPTILFFPAGN 362
             + +AK++   N     K    G PT+L F  G 
Sbjct: 62  -KLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGE 95

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1 Length = 112

 Score = 48.1 bits (115), Expect = 3e-07
 Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 17/114 (14%)

Query: 281 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 340
           VKIV      + ++ +++ V+++ +A WCG C+   P Y + +K       +V  K+D  
Sbjct: 10  VKIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTY---TKMVFIKVDVD 66

Query: 341 TNEHHRAKSD--GFPTILFFPAGNKSFDPINVDVDRTV----VALYKFLKKNAS 388
                  K +    PT   +  G+         VD  +     AL + ++K A+
Sbjct: 67  EVSEVTEKENITSMPTFKVYKNGSS--------VDTLLGANDSALKQLIEKYAA 112

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A Length = 142

 Score = 48.7 bits (116), Expect = 3e-07
 Identities = 14/79 (17%), Positives = 24/79 (30%), Gaps = 6/79 (7%)

Query: 287 NNFDEIVLDESKD--VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH 344
           +  D+  +    D  +LL                  +L +     D   +A  D   +E 
Sbjct: 25  STVDD-WIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFD-WQVAVADLEQSEA 82

Query: 345 HRAKSD--GFPTILFFPAG 361
              + +   FP  L F  G
Sbjct: 83  IGDRFNVRRFPATLVFTDG 101

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A Length = 141

 Score = 48.7 bits (116), Expect = 3e-07
 Identities = 20/100 (20%), Positives = 33/100 (33%), Gaps = 7/100 (7%)

Query: 269 KSDPIPETNDGDVKIVVGN---NFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKH 325
                      +    + +   +  E      K  +++ YA WCG C+   P   +L+K 
Sbjct: 20  PQSGTIHLTRAEFLKKIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKE 79

Query: 326 LRGVDSIVIAKMDGTTNEHHRAKSD--GFPTILFFPAGNK 363
             G   I I K++                PTI F P   +
Sbjct: 80  YAG--KIYIYKVNVDKEPELARDFGIQSIPTIWFVPMKGE 117

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A Length = 109

 Score = 47.7 bits (114), Expect = 3e-07
 Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 13/105 (12%)

Query: 279 GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD 338
                V   NFDE  L +   VL++ +A WC  C+   P   ++AK   G   +++AK+D
Sbjct: 1   AKPIEVTDQNFDE-TLGQHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEG--KLLVAKLD 57

Query: 339 GTTNEHHRAKSD--GFPTILFFPAGNKSFDPINVDVDRTVVALYK 381
              N     +      PT++ F  G          V+  V A  K
Sbjct: 58  VDENPKTAMRYRVMSIPTVILFKDGQP--------VEVLVGAQPK 94

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A Length = 104

 Score = 47.3 bits (113), Expect = 4e-07
 Identities = 23/103 (22%), Positives = 40/103 (38%), Gaps = 14/103 (13%)

Query: 281 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 340
           V  +   NFD   L   +  +++ +A WC  C    P   +LA+       +   K++  
Sbjct: 1   VIHLDSKNFDS-FLASHEIAVVDFWAEWCAPCLILAPIIEELAEDY---PQVGFGKLNSD 56

Query: 341 TNEHHRAKSD--GFPTILFFPAGNKSFDPINVDVDRTVVALYK 381
            N    A+      PT++FF  G          VD  + A+ +
Sbjct: 57  ENPDIAARYGVMSLPTVIFFKDGEP--------VDEIIGAVPR 91

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A Length = 229

 Score = 49.7 bits (118), Expect = 4e-07
 Identities = 19/123 (15%), Positives = 36/123 (29%), Gaps = 9/123 (7%)

Query: 278 DGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLA---KHLRGVDSIVI 334
           + DV++ +     +    E   + L   A  C  CQ  E    +         G D I +
Sbjct: 4   NLDVRMQLKELAQKE-FKEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKL 62

Query: 335 AKMDGTTNEHHRAKS--DGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPFK 392
                 T++    K   D  PTI+     +     I        +     +     +  +
Sbjct: 63  DIYSPFTHKEETEKYGVDRVPTIVIEGDKDY---GIRYIGLPAGLEFTTLINGIFHVSQR 119

Query: 393 IQK 395
             +
Sbjct: 120 KPQ 122

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A Length = 229

 Score = 45.0 bits (106), Expect = 1e-05
 Identities = 24/204 (11%), Positives = 59/204 (28%), Gaps = 30/204 (14%)

Query: 163 SVFESPIKN--QLLLFAVSNDSEK---LLPVFEEAAKSFKGKLI--FVYVQMDNEDVGKP 215
            + +   K    + LF+ +   E       + +E  +     +    + + + +    K 
Sbjct: 13  ELAQKEFKEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHKE 72

Query: 216 VSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPE 275
            +E +G+    P ++     D   ++   G     +  T          +    S+    
Sbjct: 73  ETEKYGVDR-VPTIVIEGDKDYGIRY--IGLPAGLEFTTLINGIFHVSQRKPQLSE---- 125

Query: 276 TNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIA 335
                         + + + +    +       CG+C +        A      D I   
Sbjct: 126 -----------KTLELLQVVDIPIEIWVFVTTSCGYCPSAAVMAWDFALA---NDYITSK 171

Query: 336 KMDGTTNEHHRAKSD--GFPTILF 357
            +D + N+    +    G P I+ 
Sbjct: 172 VIDASENQDLAEQFQVVGVPKIVI 195

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* Length = 287

 Score = 50.2 bits (120), Expect = 4e-07
 Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 11/81 (13%)

Query: 287 NNFDEIVLDESKD--VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH 344
           +N  + VL++S    VL   ++    HC    P    LA    G    ++AK+D   +  
Sbjct: 15  SNLQQ-VLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNG--QFILAKLD--CDAE 69

Query: 345 HRAKS----DGFPTILFFPAG 361
               +       PT+  F  G
Sbjct: 70  QMIAAQFGLRAIPTVYLFQNG 90

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum} Length = 133

 Score = 47.1 bits (112), Expect = 1e-06
 Identities = 12/112 (10%), Positives = 40/112 (35%), Gaps = 9/112 (8%)

Query: 281 VKIVVGNNFDEIVLDESKD--VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD 338
           +++    + ++ V   +++  ++++  A WC  C   +  +     +      + +  +D
Sbjct: 23  IELKNTGSLNQ-VFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNY----YYVTLVDID 77

Query: 339 GTTNEHHRAKSD--GFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNAS 388
              +     + +    PT  F+   N  +  ++         + K  +K   
Sbjct: 78  VDIHPKLNDQHNIKALPTFEFYFNLNNEWVLVHTVEGANQNDIEKAFQKYCL 129

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A Length = 114

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 17/109 (15%), Positives = 39/109 (35%), Gaps = 13/109 (11%)

Query: 279 GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD 338
             +  +        ++ ++  ++++ YA WCG C+  +P   KL +       +   K D
Sbjct: 12  TSITKLTNLTEFRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAY---PDVRFVKCD 68

Query: 339 GTTNEHHRAKSD--GFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKK 385
              +     + +    PT +    G          + + + A    L+K
Sbjct: 69  VDESPDIAKECEVTAMPTFVLGKDGQL--------IGKIIGANPTALEK 109

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} PDB: 1xbs_A Length = 149

 Score = 46.9 bits (111), Expect = 1e-06
 Identities = 13/83 (15%), Positives = 25/83 (30%), Gaps = 5/83 (6%)

Query: 282 KIVVGNNFDEIVLDES-KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 340
           K+      D+ +   + K ++L         C   +   +K +  L       I  +D  
Sbjct: 7   KLTSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLS--KMAAIYLVDVD 64

Query: 341 TNEH--HRAKSDGFPTILFFPAG 361
                         P+ +FF  G
Sbjct: 65  QTAVYTQYFDISYIPSTVFFFNG 87

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A Length = 105

 Score = 45.7 bits (109), Expect = 2e-06
 Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 5/84 (5%)

Query: 281 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 340
              +   NF +  +     VL++ +A WCG C+   P   + A+       + +AK++  
Sbjct: 2   TMTLTDANFQQ-AIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHAD--KVTVAKLNVD 58

Query: 341 TNEHHRAKSD--GFPTILFFPAGN 362
            N    ++      PT++ F  G 
Sbjct: 59  ENPETTSQFGIMSIPTLILFKGGR 82

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A Length = 106

 Score = 45.3 bits (108), Expect = 2e-06
 Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 13/102 (12%)

Query: 287 NNFDEIVLDES-KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHH 345
            + D  +   S K V+L+ +A WCG C+   P   +L+      D++V+ K+D    E  
Sbjct: 9   ADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFA--DNVVVLKVDVDECEDI 66

Query: 346 RAKSD--GFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKK 385
             + +    PT +F   G K        V+    A  K L+ 
Sbjct: 67  AMEYNISSMPTFVFLKNGVK--------VEEFAGANAKRLED 100

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C* Length = 116

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 21/93 (22%), Positives = 41/93 (44%), Gaps = 7/93 (7%)

Query: 275 ETNDGDVKIVVGNNFDEIVLDESKD--VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSI 332
             + G VK +      +  LD + D  V+++  A WCG  +  +P ++ L++    V   
Sbjct: 7   HHHHGSVKQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNV--- 63

Query: 333 VIAKMDGTTNEHHRAKSD--GFPTILFFPAGNK 363
           +  ++D    +   ++ +    PT  FF  G K
Sbjct: 64  IFLEVDVDDCQDVASECEVKSMPTFQFFKKGQK 96

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 3e-06
 Identities = 59/351 (16%), Positives = 105/351 (29%), Gaps = 110/351 (31%)

Query: 32  SKDAIVTWIKKKIGPGIYNITTLDEAERVLT-SETKVVLG-YLNSLVGSE-SEVLADASR 88
           ++   VT     +        +LD     LT  E K +L  YL+        EVL     
Sbjct: 272 TRFKQVT---DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL----- 323

Query: 89  LEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFADGKFDK--STIADFVF 146
                    TTNP    I              ++        +     DK  + I   + 
Sbjct: 324 ---------TTNPRRLSII--------AE--SIRDGLATWDNWKHVNCDKLTTIIESSL- 363

Query: 147 SNKLP---------LVTIFTRENAPSVFESPIKNQLL----LFAVSNDSEKLLPVFEE-- 191
            N L           +++F   +A       I   LL       + +D   ++    +  
Sbjct: 364 -NVLEPAEYRKMFDRLSVF-PPSAH------IPTILLSLIWFDVIKSDVMVVVNKLHKYS 415

Query: 192 -AAKSFKGKLIFVY-------VQMDNEDV--GKPVSEYFGITGEAPKVLAYTGNDDAKK- 240
              K  K   I +        V+++NE       V  Y       PK   +  +D     
Sbjct: 416 LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY-----NIPK--TFDSDDLIPPY 468

Query: 241 -----------HILDGELTLDKIKTFGE-----DFLEGKLKPFFKSDPIPETNDGDVKIV 284
                      H+ + E   +++  F        FLE K++           +D      
Sbjct: 469 LDQYFYSHIGHHLKNIEHP-ERMTLFRMVFLDFRFLEQKIR-----------HDSTAWNA 516

Query: 285 VGNNFDEIVLDESKDVLLEIYAPW-CGHCQAFEPTYNKLAKHLRGVDSIVI 334
            G+     +L+  +   L+ Y P+ C +   +E   N +   L  ++  +I
Sbjct: 517 SGS-----ILNTLQQ--LKFYKPYICDNDPKYERLVNAILDFLPKIEENLI 560

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 6e-05
 Identities = 44/275 (16%), Positives = 94/275 (34%), Gaps = 65/275 (23%)

Query: 183 EKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHI 242
           + +L VFE+A   F        V    +D+ K +     ++ E    +  + +  +    
Sbjct: 19  KDILSVFEDA---FVDNFDCKDV----QDMPKSI-----LSKEEIDHIIMSKDAVSGTLR 66

Query: 243 LDGELTLDKIKTFGEDFLEGKLKPFFK--SDPI-PETNDGDVKIVVGNNFDEIVLDESKD 299
           L   L L K +   + F+E  L+  +K    PI  E            +    +  E +D
Sbjct: 67  LFWTL-LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ--------PSMMTRMYIEQRD 117

Query: 300 VLL---EIYAPWCGHCQAFEPTYNKLAKHLRGVDS---IVIAKMDGTTNEHHRAKS---- 349
            L    +++A +  +    +P Y KL + L  +     ++I  + G+       K+    
Sbjct: 118 RLYNDNQVFAKY--NVSRLQP-YLKLRQALLELRPAKNVLIDGVLGS------GKTWVAL 168

Query: 350 ---DGFPTILFFPAGNKSF--DPINVDVDRTVV----ALYKFLKKNASIPFKIQKPTSAP 400
                +          K F  +  N +   TV+     L   +  N +      +   + 
Sbjct: 169 DVCLSYKVQCKMD--FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT-----SRSDHSS 221

Query: 401 KTEKPTSEPKAESSDI--KESHESS---SDKDVKD 430
             +      +AE   +   + +E+       +V++
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLL-NVQN 255

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A Length = 118

 Score = 45.0 bits (107), Expect = 3e-06
 Identities = 30/131 (22%), Positives = 44/131 (33%), Gaps = 23/131 (17%)

Query: 278 DGDVKIVVG-NNFDEIVL---DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIV 333
           +G V        FD  +    D  K V+++  A WCG C+   P + + AK   G    +
Sbjct: 5   EGAVIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFPGA---I 61

Query: 334 IAKMDGTTNEHHRAKSD--GFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPF 391
             K+D    +      +    PT LF   G K        VD  V      +        
Sbjct: 62  FLKVDVDELKDVAEAYNVEAMPTFLFIKDGEK--------VDSVVGGRKDDIHT------ 107

Query: 392 KIQKPTSAPKT 402
           KI     +  T
Sbjct: 108 KIVALMGSAST 118

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus} Length = 130

 Score = 45.0 bits (107), Expect = 4e-06
 Identities = 13/81 (16%), Positives = 30/81 (37%), Gaps = 9/81 (11%)

Query: 295 DESKDVLLEIYAPWCGHCQAFEP-TYN--KLAKHLRGVDSIVIAKMDGTTNEHHRAKSD- 350
              + V++  ++  C +CQ       +   +++ L      V+A +   T E        
Sbjct: 17  AHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLE--ARFVVASVSVDTPEGQELARRY 74

Query: 351 ---GFPTILFFPAGNKSFDPI 368
              G PT +F      +++ +
Sbjct: 75  RVPGTPTFVFLVPKAGAWEEV 95

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa} Length = 130

 Score = 45.1 bits (107), Expect = 4e-06
 Identities = 27/117 (23%), Positives = 44/117 (37%), Gaps = 20/117 (17%)

Query: 281 VKIVVGNNFDEIV---LDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKM 337
           +     + FD  +    +  K V+++  A WCG C+   P + + AK   G    V  K+
Sbjct: 17  IACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGA---VFLKV 73

Query: 338 DGTTNEHHRAKSD--GFPTILFFPAGNKSFDPINVDVDRTVVA----LYKFLKKNAS 388
           D    +    K +    PT LF   G +         D+ V A    L   + K+  
Sbjct: 74  DVDELKEVAEKYNVEAMPTFLFIKDGAE--------ADKVVGARKDDLQNTIVKHVG 122

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica} Length = 104

 Score = 43.8 bits (104), Expect = 6e-06
 Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 288 NFDEIVLD-ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 346
           + ++++ + + + ++++ +A WCG C+   P    LAK +     +  AK+D   NE   
Sbjct: 9   DLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEI---PEVEFAKVDVDQNEEAA 65

Query: 347 AKSD--GFPTILFFPAGNK 363
           AK      PT +F   G +
Sbjct: 66  AKYSVTAMPTFVFIKDGKE 84

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1 Length = 107

 Score = 43.8 bits (104), Expect = 7e-06
 Identities = 13/79 (16%), Positives = 29/79 (36%), Gaps = 6/79 (7%)

Query: 288 NFDEIVLD-ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 346
           +F   +    S+  +++     CG C    P ++ ++         V  ++D    +   
Sbjct: 11  DFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQA---VFLEVDVHQCQGTA 67

Query: 347 AKSD--GFPTILFFPAGNK 363
           A ++    PT  FF    +
Sbjct: 68  ATNNISATPTFQFFRNKVR 86

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} PDB: 2o7k_A 2o85_A 2o89_A 2o87_A Length = 106

 Score = 43.9 bits (104), Expect = 7e-06
 Identities = 27/103 (26%), Positives = 39/103 (37%), Gaps = 14/103 (13%)

Query: 281 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 340
           +  V   +FD  V       L++ +A  CG C+   P   +LA    G     I K+D  
Sbjct: 5   IVKVTDADFDSKVES--GVQLVDFWATACGPCKMIAPVLEELAADYEG--KADILKLDVD 60

Query: 341 TNEHHRAKSD--GFPTILFFPAGNKSFDPINVDVDRTVVALYK 381
            N    AK +    PT++ F  G          VD+ V    K
Sbjct: 61  ENPSTAAKYEVMSIPTLIVFKDGQP--------VDKVVGFQPK 95

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A Length = 117

 Score = 43.9 bits (104), Expect = 8e-06
 Identities = 19/89 (21%), Positives = 40/89 (44%), Gaps = 8/89 (8%)

Query: 279 GDVKIVVGNNFDEIVLDESKD--VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAK 336
            ++  +  +   E +L++ K+  V+++ +A WCG C+   P + +L++        +  K
Sbjct: 13  SELIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY----DAIFVK 68

Query: 337 MDGTTNEHHRAKSD--GFPTILFFPAGNK 363
           +D    E    K +    PT +    G K
Sbjct: 69  VDVDKLEETARKYNISAMPTFIAIKNGEK 97

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1 Length = 118

 Score = 43.8 bits (103), Expect = 9e-06
 Identities = 15/113 (13%), Positives = 37/113 (32%), Gaps = 8/113 (7%)

Query: 275 ETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRG----VD 330
             N  D+++       E + D+ +     I    C +C+ F  T + +    +     ++
Sbjct: 8   LDNIKDLEVTTVVRAQEAL-DKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFIN 66

Query: 331 SIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFL 383
           S   ++++       R      P  +    G  +   +  D   +   +  F 
Sbjct: 67  SEEPSQLNDLQAFRSRYGIPTVPGFVHITDGQIN---VRCDSSMSAQEIKDFA 116

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ... Length = 105

 Score = 43.4 bits (103), Expect = 1e-05
 Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 7/87 (8%)

Query: 281 VKIVVGNNFDEIVLDESKD--VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD 338
           VK +      +  LD + D  V+++  A WCG C+  +P ++ L++    V   +  ++D
Sbjct: 2   VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNV---IFLEVD 58

Query: 339 GTTNEHHRAKSD--GFPTILFFPAGNK 363
               +   ++S+    PT  FF  G K
Sbjct: 59  VDDCQDVASESEVKSMPTFQFFKKGQK 85

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1 Length = 113

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 22/109 (20%)

Query: 288 NFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD----GTTNE 343
           +F++      K ++++  A WC  C+   P + +LAK      ++   K+D        E
Sbjct: 18  HFEK-GKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKF---PNVTFLKVDVDELKAVAE 73

Query: 344 HHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVA----LYKFLKKNAS 388
               ++   PT +F   G          VD+TV A    L   + K+A+
Sbjct: 74  EWNVEA--MPTFIFLKDGKL--------VDKTVGADKDGLPTLVAKHAT 112

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1 Length = 124

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 26/127 (20%), Positives = 47/127 (37%), Gaps = 25/127 (19%)

Query: 274 PETNDGDVKIVVG-NNFDEI---VLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV 329
             + +G V        ++E      +    V+++  A WCG C+   P +  LAK L  V
Sbjct: 11  MASEEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNV 70

Query: 330 DSIVIAKMD----GTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVA----LYK 381
              +  K+D     +       ++   PT +F   G          +D+ V A    L  
Sbjct: 71  ---LFLKVDTDELKSVASDWAIQA--MPTFMFLKEGKI--------LDKVVGAKKDELQS 117

Query: 382 FLKKNAS 388
            + K+ +
Sbjct: 118 TIAKHLA 124

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A* Length = 122

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 29/138 (21%), Positives = 46/138 (33%), Gaps = 27/138 (19%)

Query: 270 SDPIPETNDGDVKIVV-GNNFDEIV---LDESKDVLLEIYAPWCGHCQAFEPTYNKLAKH 325
           +         +V  V     +   +       K V+++  A WCG C+   P +  LAK 
Sbjct: 3   ASATAAAVAAEVISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKK 62

Query: 326 LRGVDSIVIAKMD----GTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYK 381
                  V  K+D        E    ++   PT LF   G+          DR V A+ +
Sbjct: 63  FPNA---VFLKVDVDELKPIAEQFSVEA--MPTFLFMKEGDV--------KDRVVGAIKE 109

Query: 382 FLKKNASIPFKIQKPTSA 399
            L        K+    +A
Sbjct: 110 ELTA------KVGLHAAA 121

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1 Length = 123

 Score = 42.1 bits (99), Expect = 4e-05
 Identities = 27/109 (24%), Positives = 43/109 (39%), Gaps = 26/109 (23%)

Query: 270 SDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCG--------------HCQAF 315
           SD I    D        ++FD  VL     +L++ +A WCG               C+  
Sbjct: 2   SDKIIHLTD--------DSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMI 53

Query: 316 EPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSD--GFPTILFFPAGN 362
            P  +++A   +G   + +AK++   N     K    G PT+L F  G 
Sbjct: 54  APILDEIADEYQG--KLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGE 100

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A Length = 139

 Score = 42.1 bits (99), Expect = 4e-05
 Identities = 32/142 (22%), Positives = 53/142 (37%), Gaps = 24/142 (16%)

Query: 270 SDPIPETNDGDVKIVVG-NNFDEIV---LDESKDVLLEIYAPWCGHCQAFEPTYNKLAKH 325
            +P  E   G+V ++     +D+ +     + K VL    A WCG  +   P Y +L+++
Sbjct: 15  DEPHIELAGGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSEN 74

Query: 326 LRGVDSIVIAKMDGTTNEHHRAKSD--GFPTILFFPAGNKSFDPINVDVDRTVVALYKFL 383
              +   +   +D        A  +    PT  F   G +        VD+ V A    L
Sbjct: 75  YPSL---MFLVIDVDELSDFSASWEIKATPTFFFLRDGQQ--------VDKLVGANKPEL 123

Query: 384 KKNASIPFKIQK-PTSAPKTEK 404
            K      KI     S P ++K
Sbjct: 124 HK------KITAILDSLPPSDK 139

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae} Length = 112

 Score = 41.6 bits (98), Expect = 5e-05
 Identities = 9/78 (11%), Positives = 23/78 (29%), Gaps = 3/78 (3%)

Query: 288 NFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRA 347
            +        K ++L  +  W   C+A +  +  ++      + +    +D   N     
Sbjct: 12  TYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSN-VSFLSIDADENSEISE 70

Query: 348 KSD--GFPTILFFPAGNK 363
             +    P  +    G  
Sbjct: 71  LFEISAVPYFIIIHKGTI 88

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A Length = 112

 Score = 41.5 bits (98), Expect = 5e-05
 Identities = 24/113 (21%), Positives = 42/113 (37%), Gaps = 19/113 (16%)

Query: 281 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 340
           +      +F     +    VL + +APWCG  +   P   +L + +     + I K+D  
Sbjct: 3   IVKATDQSFSAETSE--GVVLADFWAPWCGPSKMIAPVLEELDQEMGD--KLKIVKIDVD 58

Query: 341 TNEHHRAKSD--GFPTILFFPAGNKSFDPINVDVDRTV-----VALYKFLKKN 386
            N+    K      PT+L    G          V+ +V      AL + + K+
Sbjct: 59  ENQETAGKYGVMSIPTLLVLKDGEV--------VETSVGFKPKEALQELVNKH 103

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1 Length = 85

 Score = 40.0 bits (94), Expect = 9e-05
 Identities = 12/69 (17%), Positives = 27/69 (39%), Gaps = 8/69 (11%)

Query: 297 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSD----GF 352
           SK  +    +P C HC A +    ++A  +    ++ +  ++    E+ +   +      
Sbjct: 2   SKVKIELFTSPMCPHCPAAKRVVEEVANEMPD--AVEVEYIN--VMENPQKAMEYGIMAV 57

Query: 353 PTILFFPAG 361
           PTI+     
Sbjct: 58  PTIVINGDV 66

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} Length = 151

 Score = 40.4 bits (94), Expect = 2e-04
 Identities = 14/82 (17%), Positives = 31/82 (37%), Gaps = 3/82 (3%)

Query: 291 EIVLDESKDVLLEIYAPWCGHCQAFEPTY--NKLAKHLRGVDSIVIAKMDGTTNEHHRAK 348
                  K +++  +   C + QA +  +  N+  + +     I++  M  TT+++    
Sbjct: 38  FYAQKSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQNKFIMLNLMHETTDKNLSPD 97

Query: 349 SDGFPTILFF-PAGNKSFDPIN 369
               P I+F  P+     D   
Sbjct: 98  GQYVPRIMFVDPSLTVRADIAG 119

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C Length = 245

 Score = 41.2 bits (96), Expect = 3e-04
 Identities = 27/128 (21%), Positives = 43/128 (33%), Gaps = 10/128 (7%)

Query: 283 IVVGNNFDEIVLDESKD--VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 340
           +  G  F E +  E K   +++ IY      C A   +   LA     V      K+  +
Sbjct: 117 LESGEQFLETIEKEQKITTIVVHIYEDGIKGCDALNSSLICLAAEYPMV---KFCKIKAS 173

Query: 341 TNE-HHRAKSDGFPTILFFPAGNKSFDPINVD----VDRTVVALYKFLKKNASIPFKIQK 395
                 R  SD  PT+L +  G    + I+V      +     +  FL +   +P K   
Sbjct: 174 NTGAGDRFSSDVLPTLLVYKGGELLSNFISVTEQLAEEFFTGDVESFLNEYGLLPEKEMH 233

Query: 396 PTSAPKTE 403
                  E
Sbjct: 234 VLEQTNME 241

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A Length = 226

 Score = 41.2 bits (96), Expect = 3e-04
 Identities = 30/204 (14%), Positives = 57/204 (27%), Gaps = 28/204 (13%)

Query: 165 FESPIKNQLLLFAVSNDSEK---LLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFG 221
             +P+K  L++F   +  +    L  + +E +     KL +  V  D  +  +    Y  
Sbjct: 20  MVNPVK--LIVFVRKDHCQYCDQLKQLVQELS-ELTDKLSYEIVDFDTPEGKELAKRY-- 74

Query: 222 ITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDV 281
              +       T +         G     +   F ED ++        S       D   
Sbjct: 75  -RIDRAPATTITQDGKDFGVRYFGLPAGHEFAAFLEDIVD-------VSREETNLMD--- 123

Query: 282 KIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAK--HLRGVDSIVIAKMDG 339
                     I   +    +L    P C +C       +K A      G   I+   ++ 
Sbjct: 124 -----ETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEA 178

Query: 340 TTNEHHRAKSD--GFPTILFFPAG 361
                   + +    P I+    G
Sbjct: 179 IEYPEWADQYNVMAVPKIVIQVNG 202

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	432
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	100.0
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	100.0
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	100.0
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	100.0
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	100.0
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	100.0
3ec3_A	250	Protein disulfide-isomerase A4; thioredoxin-like f	100.0
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	100.0
2h8l_A	252	Protein disulfide-isomerase A3; thioredoxin-like f	100.0
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	99.98
4f9z_D	227	Endoplasmic reticulum resident protein 27; thiored	99.97
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	99.96
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	99.92
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	99.91
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	99.91
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	99.9
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	99.88
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	99.87
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	99.85
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	99.83
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	99.82
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	99.82
3bj5_A	147	Protein disulfide-isomerase; thioredoxin fold, cha	99.82
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	99.79
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	99.78
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	99.77
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	99.77
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	99.75
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	99.75
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	99.75
2qsi_A	137	Putative hydrogenase expression/formation protein;	99.74
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	99.73
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	99.72
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	99.72
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	99.72
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	99.72
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	99.71
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	99.71
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	99.71
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	99.71
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	99.71
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	99.7
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	99.7
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	99.7
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	99.69
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	99.69
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	99.69
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	99.69
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	99.69
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	99.69
1mek_A	120	Protein disulfide isomerase; electron transport, r	99.69
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	99.69
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	99.68
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	99.68
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	99.68
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	99.68
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	99.68
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	99.67
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	99.67
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	99.67
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	99.67
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	99.67
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	99.67
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	99.67
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	99.67
4f9z_D	227	Endoplasmic reticulum resident protein 27; thiored	99.66
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	99.66
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	99.65
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	99.65
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	99.64
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	99.64
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	99.64
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	99.64
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	99.63
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	99.63
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	99.63
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	99.63
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.62
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.62
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	99.62
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	99.62
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	99.62
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	99.61
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	99.61
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	99.61
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	99.6
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	99.6
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	99.6
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	99.6
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	99.6
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	99.6
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	99.59
2l4c_A	124	Endoplasmic reticulum resident protein 27; ERP27,	99.59
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	99.59
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	99.59
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	99.58
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	99.58
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	99.58
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	99.57
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	99.57
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	99.57
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	99.57
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	99.56
2l57_A	126	Uncharacterized protein; structural genomics, unkn	99.55
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	99.55
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	99.55
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	99.31
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	99.54
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	99.54
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	99.54
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	99.53
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	99.53
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	99.52
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	99.5
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	99.49
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	99.48
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	99.45
2kuc_A	130	Putative disulphide-isomerase; structural genomics	99.42
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	99.42
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	99.42
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	99.42
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	99.4
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	99.4
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	99.4
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	99.39
2h8l_A	252	Protein disulfide-isomerase A3; thioredoxin-like f	99.38
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	99.37
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	99.35
3iv4_A	112	Putative oxidoreductase; APC23140, meticillin-resi	99.3
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	99.3
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	98.96
3ec3_A	250	Protein disulfide-isomerase A4; thioredoxin-like f	99.27
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	99.24
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	99.24
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	99.22
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	99.21
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	99.2
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	99.19
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	99.19
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	99.19
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	99.19
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	99.18
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	99.17
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	99.17
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	99.17
1un2_A	197	DSBA, thiol-disulfide interchange protein; disulfi	99.17
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	99.16
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	99.16
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	99.16
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	99.16
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	99.15
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	99.15
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	99.15
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	99.14
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	99.14
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	99.14
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	99.14
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	99.14
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	99.14
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	99.13
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	99.13
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	99.13
3raz_A	151	Thioredoxin-related protein; structural genomics,	99.12
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	99.12
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	99.11
1mek_A	120	Protein disulfide isomerase; electron transport, r	99.11
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	99.1
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	99.1
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	99.1
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	99.1
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	99.1
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	99.09
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	99.09
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	99.09
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	99.09
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	99.09
2l57_A	126	Uncharacterized protein; structural genomics, unkn	99.09
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	99.08
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	99.08
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	99.08
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	99.07
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	99.07
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	99.06
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	99.06
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	99.06
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	99.05
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	99.05
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	99.05
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	99.05
2qsi_A	137	Putative hydrogenase expression/formation protein;	99.04
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	99.04
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.04
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	99.03
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	99.03
1ttz_A	87	Conserved hypothetical protein; structural genomic	99.03
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	99.03
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	99.02
4evm_A	138	Thioredoxin family protein; structural genomics, n	99.02
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	99.02
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	99.02
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	99.0
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	99.0
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	99.0
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	98.99
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	98.99
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	98.99
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	98.99
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	98.98
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	98.98
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	98.98
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.98
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	98.96
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	98.95
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	98.95
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	98.95
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	98.93
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	98.93
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	98.93
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	98.93
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	98.92
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	98.92
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	98.92
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	98.91
3ira_A	173	Conserved protein; methanosarcina mazei,structural	98.91
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	98.91
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	98.91
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	98.91
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	98.91
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	98.91
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	98.9
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	98.9
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	98.87
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	98.86
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	98.85
2lrt_A	152	Uncharacterized protein; structural genomics, thio	98.85
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	98.84
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	98.82
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	98.81
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	98.81
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	98.8
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	98.8
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	98.8
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	98.8
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	98.8
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	98.79
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	98.78
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	98.25
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	98.75
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	98.74
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	98.74
2kuc_A	130	Putative disulphide-isomerase; structural genomics	98.74
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	98.74
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	98.74
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	98.73
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	98.73
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	98.71
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	98.7
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	98.68
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	98.68
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	98.67
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	98.67
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	98.67
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	98.67
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	98.67
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	98.11
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	98.65
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	98.63
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	98.62
2k6v_A	172	Putative cytochrome C oxidase assembly protein; th	98.6
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	98.59
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	98.58
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	98.58
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	98.58
3dwv_A	187	Glutathione peroxidase-like protein; alpha beta, 3	98.57
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	98.57
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	98.56
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	97.96
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	98.54
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	98.54
2p5q_A	170	Glutathione peroxidase 5; thioredoxin fold, oxidor	98.53
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	98.52
2v1m_A	169	Glutathione peroxidase; selenium, selenocysteine,	98.52
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	98.49
2obi_A	183	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	98.48
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	97.87
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	98.47
2p31_A	181	CL683, glutathione peroxidase 7; thioredoxin fold,	98.46
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	98.45
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	98.44
2f8a_A	208	Glutathione peroxidase 1; thioredoxin fold, struct	98.43
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	98.4
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	98.39
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	98.39
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	98.38
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	98.37
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	98.36
3iv4_A	112	Putative oxidoreductase; APC23140, meticillin-resi	98.34
1zof_A	198	Alkyl hydroperoxide-reductase; decamer, toroide-sh	98.34
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	98.33
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	98.32
3kij_A	180	Probable glutathione peroxidase 8; human PDI-perox	98.32
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	98.31
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	98.29
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	98.28
2gs3_A	185	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	98.28
3raz_A	151	Thioredoxin-related protein; structural genomics,	98.28
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	98.26
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	98.24
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	98.24
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	98.23
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	98.22
1xzo_A	174	BSSCO, hypothetical protein YPMQ; thioredoxin-like	98.22
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.2
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	98.17
2l4c_A	124	Endoplasmic reticulum resident protein 27; ERP27,	98.16
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	98.13
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	98.11
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	98.11
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	98.09
4evm_A	138	Thioredoxin family protein; structural genomics, n	98.09
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	98.08
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	98.07
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	98.07
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	98.07
2h01_A	192	2-Cys peroxiredoxin; thioredoxin peroxidase, struc	98.06
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	98.06
1zye_A	220	Thioredoxin-dependent peroxide reductase; catenane	98.04
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	98.04
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	98.04
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	98.03
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	98.03
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	98.02
3ztl_A	222	Thioredoxin peroxidase; oxidoreductase, reductase,	98.01
2jsy_A	167	Probable thiol peroxidase; solution structure, ant	98.0
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	97.99
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	97.95
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	97.94
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	97.94
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	97.94
1t3b_A	211	Thiol:disulfide interchange protein DSBC; oxidored	97.93
2b7k_A	200	SCO1 protein; metallochaperone, cytochrome C oxida	97.92
3gkn_A	163	Bacterioferritin comigratory protein; BCP, PRX, at	97.92
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	97.91
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	97.87
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	97.85
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	97.82
2i3y_A	215	Epididymal secretory glutathione peroxidase; thior	97.82
1kte_A	105	Thioltransferase; redox-active center, electron tr	97.81
1xvq_A	175	Thiol peroxidase; thioredoxin fold, structural gen	97.8
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	97.78
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	97.77
3bj5_A	147	Protein disulfide-isomerase; thioredoxin fold, cha	97.75
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	97.75
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	97.74
2lqo_A	92	Putative glutaredoxin RV3198.1/MT3292; TRX fold, o	97.69
3ira_A	173	Conserved protein; methanosarcina mazei,structural	97.68
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	97.66
3h93_A	192	Thiol:disulfide interchange protein DSBA; disulfid	97.65
2a4v_A	159	Peroxiredoxin DOT5; yeast nuclear thiol peroxidase	97.63
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	97.61
2lrt_A	152	Uncharacterized protein; structural genomics, thio	97.6
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	97.59
1ttz_A	87	Conserved hypothetical protein; structural genomic	97.58
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	97.58
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	97.57
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	97.56
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	97.56
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	97.56
2c0d_A	221	Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th	97.54
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	97.53
3nzn_A	103	Glutaredoxin; structural genomics, PSI2, MCSG, pro	97.51
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	97.5
3ixr_A	179	Bacterioferritin comigratory protein; alpha beta p	97.49
3ic4_A	92	Glutaredoxin (GRX-1); structural genomics, PSI, MC	97.48
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	97.48
1fov_A	82	Glutaredoxin 3, GRX3; active site disulfide, CIS P	97.46
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	97.45
3qmx_A	99	Glutaredoxin A, glutaredoxin 3; electron transport	97.42
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	97.4
3me7_A	170	Putative uncharacterized protein; electron transfe	97.39
3c1r_A	118	Glutaredoxin-1; oxidized form, oxidoreductase, cyt	97.39
3a2v_A	249	Probable peroxiredoxin; thioredoxin peroxidase, hy	97.37
2ec4_A	178	FAS-associated factor 1; UAS domain, protein FAF1,	97.34
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	97.34
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	97.33
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	97.33
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	97.32
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	97.32
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	97.32
2r37_A	207	Glutathione peroxidase 3; plasma, structural genom	97.28
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	97.26
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	97.25
3hd5_A	195	Thiol:disulfide interchange protein DSBA; protein	97.21
2znm_A	195	Thiol:disulfide interchange protein DSBA; thioredo	97.2
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	97.19
4g2e_A	157	Peroxiredoxin; redox protein, structural genomics,	97.19
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	97.18
1q98_A	165	Thiol peroxidase, TPX; structural genomics, NYSGXR	97.18
3dwv_A	187	Glutathione peroxidase-like protein; alpha beta, 3	97.14
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	97.13
4hde_A	170	SCO1/SENC family lipoprotein; structural genomics,	97.13
2khp_A	92	Glutaredoxin; thioredoxin type domain, ssgcid, ele	97.1
2p5q_A	170	Glutathione peroxidase 5; thioredoxin fold, oxidor	97.07
2yan_A	105	Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H	97.04
3rhb_A	113	ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox	97.04
3hz8_A	193	Thiol:disulfide interchange protein DSBA; thiol-ox	97.0
2pn8_A	211	Peroxiredoxin-4; thioredoxin, oxidoreductase, stru	96.99
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	96.99
2wfc_A	167	Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan	96.99
1tp9_A	162	Peroxiredoxin, PRX D (type II); oligomer, thioredo	96.98
2yzh_A	171	Probable thiol peroxidase; redox protein, antioxid	96.96
2pwj_A	171	Mitochondrial peroxiredoxin; alpha and beta protei	96.95
2v1m_A	169	Glutathione peroxidase; selenium, selenocysteine,	96.95
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	96.9
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	95.95
2k6v_A	172	Putative cytochrome C oxidase assembly protein; th	96.9
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	96.89
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	96.83
3zrd_A	200	Thiol peroxidase; oxidoreductase, 2Cys peroxiredox	96.82
1n8j_A	186	AHPC, alkyl hydroperoxide reductase C22 protein; p	96.77
3msz_A	89	Glutaredoxin 1; alpha-beta sandwich, center for st	96.72
2p31_A	181	CL683, glutathione peroxidase 7; thioredoxin fold,	96.7
1psq_A	163	Probable thiol peroxidase; structural genomics, NY	96.66
1zof_A	198	Alkyl hydroperoxide-reductase; decamer, toroide-sh	96.65
4dvc_A	184	Thiol:disulfide interchange protein DSBA; pilus as	96.61
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	96.6
1wik_A	109	Thioredoxin-like protein 2; picot homology 2 domai	96.6
4gqc_A	164	Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f	96.6
2obi_A	183	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	96.54
3kij_A	180	Probable glutathione peroxidase 8; human PDI-perox	96.53
3qpm_A	240	Peroxiredoxin; oxidoreductase, thioredoxin fold, p	96.52
3uma_A	184	Hypothetical peroxiredoxin protein; nysgrc, PSI bi	96.51
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	96.47
3gv1_A	147	Disulfide interchange protein; neisseria gonorrhoe	96.43
3h8q_A	114	Thioredoxin reductase 3; oxidoreductase, structura	96.4
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	95.39
3l9v_A	189	Putative thiol-disulfide isomerase or thioredoxin;	96.33
2f8a_A	208	Glutathione peroxidase 1; thioredoxin fold, struct	96.33
3p7x_A	166	Probable thiol peroxidase; thioredoxin fold, oxido	96.33
2gs3_A	185	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	96.32
1xzo_A	174	BSSCO, hypothetical protein YPMQ; thioredoxin-like	96.29
3mng_A	173	Peroxiredoxin-5, mitochondrial; peroxidase, PRXV,	96.28
3tjj_A	254	Peroxiredoxin-4; thioredoxin fold, sulfenylation,	96.27
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	96.26
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	95.96
3ctg_A	129	Glutaredoxin-2; reduced form, electron transport,	95.91
3feu_A	185	Putative lipoprotein; alpha-beta structure, struct	95.89
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	95.82
1zye_A	220	Thioredoxin-dependent peroxide reductase; catenane	95.76
2jsy_A	167	Probable thiol peroxidase; solution structure, ant	95.74
2b7k_A	200	SCO1 protein; metallochaperone, cytochrome C oxida	95.7
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	95.68
1prx_A	224	HORF6; peroxiredoxin, hydrogen peroxide, redox reg	95.65
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	95.49
2v2g_A	233	Peroxiredoxin 6; oxidoreductase, antioxidant enzym	95.47
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	95.36
2h01_A	192	2-Cys peroxiredoxin; thioredoxin peroxidase, struc	95.31
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	95.25
2ct6_A	111	SH3 domain-binding glutamic acid-rich-like protein	95.2
1z6m_A	175	Conserved hypothetical protein; structural genomic	95.09
1xcc_A	220	1-Cys peroxiredoxin; unknown function, structural	95.09
1t1v_A	93	SH3BGRL3, SH3 domain-binding glutamic acid-rich pr	94.94
2rem_A	193	Disulfide oxidoreductase; disulfide oxidoreductase	94.91
1aba_A	87	Glutaredoxin; electron transport; HET: MES; 1.45A	94.9
3ztl_A	222	Thioredoxin peroxidase; oxidoreductase, reductase,	94.89
2wci_A	135	Glutaredoxin-4; redox-active center, iron-sulfur c	94.7
3gkn_A	163	Bacterioferritin comigratory protein; BCP, PRX, at	94.22
3l9s_A	191	Thiol:disulfide interchange protein; thioredoxin-f	94.09
3zyw_A	111	Glutaredoxin-3; metal binding protein; 1.84A {Homo	94.09
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	94.02
1t3b_A	211	Thiol:disulfide interchange protein DSBC; oxidored	93.47
2axo_A	270	Hypothetical protein ATU2684; alpha beta protein.,	93.35
3ipz_A	109	Monothiol glutaredoxin-S14, chloroplastic; electro	93.27
1un2_A	197	DSBA, thiol-disulfide interchange protein; disulfi	93.27
3l4n_A	127	Monothiol glutaredoxin-6; C-terminal domain of GRX	93.27
3gx8_A	121	Monothiol glutaredoxin-5, mitochondrial; TRX fold,	92.7
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	92.65
1xvq_A	175	Thiol peroxidase; thioredoxin fold, structural gen	92.65
2i3y_A	215	Epididymal secretory glutathione peroxidase; thior	92.62
4f82_A	176	Thioredoxin reductase; structural genomics, niaid,	92.36
2wem_A	118	Glutaredoxin-related protein 5; chromosome 14 open	92.28
3keb_A	224	Probable thiol peroxidase; structural genomics, AP	91.87
2r37_A	207	Glutathione peroxidase 3; plasma, structural genom	91.73
3ixr_A	179	Bacterioferritin comigratory protein; alpha beta p	91.58
1u6t_A	121	SH3 domain-binding glutamic acid-rich-like protein	91.5
3sbc_A	216	Peroxiredoxin TSA1; alpha-beta fold, peroxidase, c	91.34
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	91.13
3c7m_A	195	Thiol:disulfide interchange protein DSBA-like; red	91.07
2c0d_A	221	Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th	91.04
2a4v_A	159	Peroxiredoxin DOT5; yeast nuclear thiol peroxidase	91.0
1n8j_A	186	AHPC, alkyl hydroperoxide reductase C22 protein; p	90.85
3a2v_A	249	Probable peroxiredoxin; thioredoxin peroxidase, hy	90.79
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	90.64
3h93_A	192	Thiol:disulfide interchange protein DSBA; disulfid	90.17
3p7x_A	166	Probable thiol peroxidase; thioredoxin fold, oxido	89.66
1kte_A	105	Thioltransferase; redox-active center, electron tr	89.62
1q98_A	165	Thiol peroxidase, TPX; structural genomics, NYSGXR	89.13
3me7_A	170	Putative uncharacterized protein; electron transfe	88.73
3gha_A	202	Disulfide bond formation protein D; BDBD, DSBA-lik	88.55
2ec4_A	178	FAS-associated factor 1; UAS domain, protein FAF1,	88.04

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=100.00  E-value=3.4e-52  Score=412.59  Aligned_cols=372  Identities=29%  Similarity=0.504  Sum_probs=331.5

Q ss_pred             CCCcceeeeccCcccccCCCcccCccCCCCCChhHHHHHHHHhhCCCceeeCCHHHHHHHhhcCCeEEEEEecCCCcchH
Q 013976            1 MSWRTSTTFRASRRFTSSSTASIKLIMAAAPSKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNSLVGSES   80 (432)
Q Consensus         1 ~~~Ptl~~f~~g~~~~~~~~~~~~~~Y~G~~~~~~i~~~l~~~~~~~~~~i~~~~~l~~~~~~~~~~vv~f~~~~~~~~~   80 (432)
                      .+||||++|++|+...         .|.|.++++.|++||.++++|++..+.+.++++++++.+++++|+||.+.+...+
T Consensus        74 ~~~Ptl~~~~~g~~~~---------~~~G~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~vv~~~~~~~~~~~  144 (481)
T 3f8u_A           74 SGYPTLKIFRDGEEAG---------AYDGPRTADGIVSHLKKQAGPASVPLRTEEEFKKFISDKDASIVGFFDDSFSEAH  144 (481)
T ss_dssp             CEESEEEEEETTEEEE---------ECCSCSSHHHHHHHHHHHTSCSEEEECSHHHHHHHTTSSSCEEEEEESCTTCHHH
T ss_pred             CCCCEEEEEeCCceee---------eecCccCHHHHHHHHHhhcccCceecCCHHHHHHHHhcCCcEEEEEECCCccchH
Confidence            3799999999996544         4999999999999999999999999999999999999999999999988888999


Q ss_pred             HHHHHHh-ccCCCceEEEeCcHHHHhHcCCCCCCCCCeEEEEe------cCCCceecccC-CCCCHHHHHHHHHhcCCCc
Q 013976           81 EVLADAS-RLEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVK------KETEKISYFAD-GKFDKSTIADFVFSNKLPL  152 (432)
Q Consensus        81 ~~f~~~a-~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~i~l~~------~~~~~~~~y~~-g~~~~~~l~~fi~~~~~p~  152 (432)
                      +.|.++| .+++++.|+++++.++++++++..    +.+++|+      ..++....| . |.++.++|.+||..++.|+
T Consensus       145 ~~f~~~a~~~~~~~~F~~~~~~~~~~~~~v~~----~~i~~~~p~~~~~~~~~~~~~y-~~~~~~~~~l~~fi~~~~~p~  219 (481)
T 3f8u_A          145 SEFLKAASNLRDNYRFAHTNVESLVNEYDDNG----EGIILFRPSHLTNKFEDKTVAY-TEQKMTSGKIKKFIQENIFGI  219 (481)
T ss_dssp             HHHHHHHHHHTTTSCEEEECCHHHHHHHCSSS----EEEEEECCGGGCBTTBCSEEEC-CCSSCCHHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHhccCceEEEECCHHHHHHhCCCC----CcEEEEecccccCccCCccccc-CCCCCCHHHHHHHHHHhCCCC
Confidence            9999999 788999999999999999999986    6699999      556677889 6 8899999999999999999


Q ss_pred             eeecCCCchhhhccCCCcceEEEEEeC-c-c---hhhhHHHHHHHHHhccCc---eEEEEEecCCcccccchhhhhCCCC
Q 013976          153 VTIFTRENAPSVFESPIKNQLLLFAVS-N-D---SEKLLPVFEEAAKSFKGK---LIFVYVQMDNEDVGKPVSEYFGITG  224 (432)
Q Consensus       153 v~~l~~~~~~~~~~~~~~~~i~~~~~~-~-~---~~~~~~~~~~~a~~~~~~---i~f~~vd~~~~~~~~~l~~~~~i~~  224 (432)
                      +.+++.+++..++..  +.+++|+... . .   .+.+...+.++|++|+++   +.|+++|+..   ....++.||++.
T Consensus       220 v~e~t~~n~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~vA~~~~~k~~~i~F~~~D~~~---~~~~l~~~gl~~  294 (481)
T 3f8u_A          220 CPHMTEDNKDLIQGK--DLLIAYYDVDYEKNAKGSNYWRNRVMMVAKKFLDAGHKLNFAVASRKT---FSHELSDFGLES  294 (481)
T ss_dssp             SCEECTTTHHHHTTS--SEEEEEECCCTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEETTT---THHHHGGGTCCC
T ss_pred             ccccChhHHHHhcCC--CceEEEEecccccchhhHHHHHHHHHHHHHHhcCCCceEEEEEEcHHH---HHHHHHHcCCCc
Confidence            999999999998753  4455554432 2 1   233678899999999998   9999999987   457789999983


Q ss_pred             --CCCcEEEEEeCCCCceecCCCCCCHH--HHHHHHHHHhcCCcCccccCCCCCCCCCCceEEEecccchhhhhcCCCcE
Q 013976          225 --EAPKVLAYTGNDDAKKHILDGELTLD--KIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDV  300 (432)
Q Consensus       225 --~~~P~i~i~~~~~~~~y~~~~~~~~~--~i~~fi~~~~~g~l~~~~~se~~p~~~~~~v~~l~~~~~~~~~~~~~~~~  300 (432)
                        ...|++++++ .++.+|.|.+.++.+  +|.+|++++++|+++++++|+++|....+.+..+++.+|++.+.+.++++
T Consensus       295 ~~~~~P~~~i~~-~~~~ky~~~~~~t~e~~~l~~f~~~~~~g~~~~~~~s~~~p~~~~~~v~~~~~~~~~~~~~~~~k~v  373 (481)
T 3f8u_A          295 TAGEIPVVAIRT-AKGEKFVMQEEFSRDGKALERFLQDYFDGNLKRYLKSEPIPESNDGPVKVVVAENFDEIVNNENKDV  373 (481)
T ss_dssp             CTTCSCEEEEEC-SSSCEEECCSCCCTTSHHHHHHHHHHHHTCCCCCCCCCCCCSCCCSSSEEECTTTHHHHHTCTTCEE
T ss_pred             ccCCCcEEEEEc-CCCcccCCCcccCccHHHHHHHHHHHhcCCcccccccCCCCCCCCCCeEEecccCHHHHhhcCCCcE
Confidence              3689999987 446789999889999  99999999999999999999999998889999999999999987778999


Q ss_pred             EEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc-ccCCCCCCceEEEEeCCCcccCceeccCCCCHHHH
Q 013976          301 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVAL  379 (432)
Q Consensus       301 lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-~~~~i~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l  379 (432)
                      +|.|||+||++|+.+.|.|.+++..+++..++.++.+|++.++. ..++|.++||+++|++|..+ ++..|.|.++.+.|
T Consensus       374 lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~~v~~~~id~~~~~~~~~~~v~~~Pt~~~~~~~~~~-~~~~~~G~~~~~~l  452 (481)
T 3f8u_A          374 LIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATANDVPSPYEVRGFPTIYFSPANKKL-NPKKYEGGRELSDF  452 (481)
T ss_dssp             EEEEECTTBHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTSSCCCTTCCCCSSSEEEEECTTCTT-SCEECCSCCSHHHH
T ss_pred             EEEEecCcChhHHHhhHHHHHHHHHhccCCCEEEEEEECCchhhHhhCCCcccCEEEEEeCCCeE-eeeEeCCCCCHHHH
Confidence            99999999999999999999999999886689999999999977 58999999999999999876 57899999999999


Q ss_pred             HHHHHhcCCCCCcc
Q 013976          380 YKFLKKNASIPFKI  393 (432)
Q Consensus       380 ~~fi~~~~~~~~~~  393 (432)
                      .+||+++++.+...
T Consensus       453 ~~~l~~~~~~~~~~  466 (481)
T 3f8u_A          453 ISYLQREATNPPVI  466 (481)
T ss_dssp             HHHHHHHCSSCCCC
T ss_pred             HHHHHHhcCCcccc
Confidence            99999999876654

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=100.00  E-value=4.6e-52  Score=396.68  Aligned_cols=340  Identities=35%  Similarity=0.614  Sum_probs=307.9

Q ss_pred             hCCCceeeCCHHHHHHHhhcCCeEEEEEecCCCcchHHHHHHHhccCCCceEEEeCcHHHHhHcCCCCCCCCCeEEEEec
Q 013976           44 IGPGIYNITTLDEAERVLTSETKVVLGYLNSLVGSESEVLADASRLEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKK  123 (432)
Q Consensus        44 ~~~~~~~i~~~~~l~~~~~~~~~~vv~f~~~~~~~~~~~f~~~a~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~i~l~~~  123 (432)
                      ..+.+..|++.+++++|++.++++|||||.+.+.+.++.|.++|+..+++.|+++++.++|++++++.    |+|++||.
T Consensus        15 ~~~~~~~l~~~~~~~~~~~~~~~~vvgff~~~~~~~~~~f~~~A~~~~~~~F~~t~~~~v~~~~~v~~----~~i~lfk~   90 (361)
T 3uem_A           15 GSEFATTLPDGAAAESLVESSEVAVIGFFKDVESDSAKQFLQAAEAIDDIPFGITSNSDVFSKYQLDK----DGVVLFKK   90 (361)
T ss_dssp             CCSSSEECCSHHHHHHHHHTSSEEEEEECSCTTSHHHHHHHHHHHHCSSSCEEEECCHHHHHHTTCSS----SEEEEEES
T ss_pred             ccccceecCCHHHHHHHHhcCCcEEEEEEcCCCchHHHHHHHHHhcCCCceEEEECcHHHHHHhCCCC----CeEEEEEe
Confidence            45778999999999999999999999999998899999999999555899999999999999999976    99999999


Q ss_pred             CCCceecccCCCCCHHHHHHHHHhcCCCceeecCCCchhhhccCCCcc-eEEEEEeC-cchhhhHHHHHHHHHhccCceE
Q 013976          124 ETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKN-QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLI  201 (432)
Q Consensus       124 ~~~~~~~y~~g~~~~~~l~~fi~~~~~p~v~~l~~~~~~~~~~~~~~~-~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~  201 (432)
                      .++....| +|+++.++|.+||..++.|++.+++++++..++..+.+. +++||++| ++|+++.+.|+++|+++++++.
T Consensus        91 f~~~~~~~-~g~~~~~~i~~fi~~~~~p~v~~~~~~~~~~~~~~~~~~~~v~F~~~~~~~~~~~~~~~~~~A~~~~~~i~  169 (361)
T 3uem_A           91 FDEGRNNF-EGEVTKENLLDFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKIL  169 (361)
T ss_dssp             STTSEEEC-CSCCCHHHHHHHHHHHSSCSEEECSTTTHHHHHSCSCCEEEEEECCSSSSSHHHHHHHHHHHHGGGTTTCE
T ss_pred             cCCCcccc-CCcCCHHHHHHHHHHcCCCcceecCcccHHHHhcCCCCcEEEEEEeCCchhHHHHHHHHHHHHHHccCceE
Confidence            88888999 999999999999999999999999999999998876554 56677788 8999999999999999999999


Q ss_pred             EEEEecCCcccccchhhhhCCCCCCCcEEEEEeCC-CCceecCC-CCCCHHHHHHHHHHHhcCCcCccccCCCCCCC-CC
Q 013976          202 FVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGND-DAKKHILD-GELTLDKIKTFGEDFLEGKLKPFFKSDPIPET-ND  278 (432)
Q Consensus       202 f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~-~~~~y~~~-~~~~~~~i~~fi~~~~~g~l~~~~~se~~p~~-~~  278 (432)
                      |+.+|++... ++.+++.||++....|+++++..+ ...+|.+. |.++.++|.+|++++++|++++..+|+++|+. ..
T Consensus       170 f~~vd~~~~~-~~~~~~~fgi~~~~~P~~~~~~~~~~~~ky~~~~~~~~~~~l~~fi~~~l~g~~~~~~~s~~~p~~~~~  248 (361)
T 3uem_A          170 FIFIDSDHTD-NQRILEFFGLKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEGKIKPHLMSQELPEDWDK  248 (361)
T ss_dssp             EEEECTTSGG-GHHHHHHTTCCTTTCSEEEEEECC--CCEECCSSCCCCHHHHHHHHHHHHTTCSCCCCBCCCCCTTTTT
T ss_pred             EEEecCChHH-HHHHHHHcCCCccCCccEEEEEcCCcccccCCCccccCHHHHHHHHHHHhcCCCcccccCCCCCccccc
Confidence            9999999433 678999999998556999999874 34677764 68999999999999999999999999999987 47


Q ss_pred             CceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCcccccCCCCCCceEEEE
Q 013976          279 GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFF  358 (432)
Q Consensus       279 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~~~~~i~~~P~i~~~  358 (432)
                      +.|..|++.+|++.+.+.+++++|.||||||++|+.+.|.|.+++..+++..++.++.+|++.+...+++|.++|++++|
T Consensus       249 ~~v~~l~~~~f~~~~~~~~k~~lv~f~a~wC~~C~~~~p~~~~la~~~~~~~~v~~~~vd~~~~~~~~~~v~~~Pt~~~~  328 (361)
T 3uem_A          249 QPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANEVEAVKVHSFPTLKFF  328 (361)
T ss_dssp             SSSEEECTTTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTTCBCSSCCCCSSSEEEEE
T ss_pred             CCcEEeecCchhhhcccCCCcEEEEEecCcCHhHHHHHHHHHHHHHHhccCCcEEEEEEECCccchhhcCCcccCeEEEE
Confidence            78999999999999888889999999999999999999999999999988667999999999999999999999999999


Q ss_pred             eCCCcccCceeccCCCCHHHHHHHHHhcCCCC
Q 013976          359 PAGNKSFDPINVDVDRTVVALYKFLKKNASIP  390 (432)
Q Consensus       359 ~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~  390 (432)
                      ++|... .+..|.|.++.+.|.+||+++.+..
T Consensus       329 ~~~~~~-~~~~~~G~~~~~~l~~~l~~~~~~~  359 (361)
T 3uem_A          329 PASADR-TVIDYNGERTLDGFKKFLESGGQDG  359 (361)
T ss_dssp             CSSSSC-CCEECCSCSSHHHHHHHHTTTSCSC
T ss_pred             ECCCCc-ceeEecCCCCHHHHHHHHHhcCCCC
Confidence            887543 5779999999999999999987653

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=100.00  E-value=6.2e-51  Score=405.60  Aligned_cols=365  Identities=26%  Similarity=0.412  Sum_probs=322.6

Q ss_pred             CCCcceeeeccCcc--cccCCCcccCccCCCCCChhHHHHHHHHhhCCCceeeCCHHHHHHHhhcCC--eEEEEEecCCC
Q 013976            1 MSWRTSTTFRASRR--FTSSSTASIKLIMAAAPSKDAIVTWIKKKIGPGIYNITTLDEAERVLTSET--KVVLGYLNSLV   76 (432)
Q Consensus         1 ~~~Ptl~~f~~g~~--~~~~~~~~~~~~Y~G~~~~~~i~~~l~~~~~~~~~~i~~~~~l~~~~~~~~--~~vv~f~~~~~   76 (432)
                      .||||+++|++|+.  ..         .|.|.++.+.|++||.+.+.|++..|++   ++.|++..+  +.+|+||.+.+
T Consensus        85 ~~~Pt~~~~~~g~~~~~~---------~~~G~~~~~~l~~~l~~~~~~~v~~i~~---~~~~~~~~~~~~~~v~~f~~~~  152 (504)
T 2b5e_A           85 PGFPSLKIFKNSDVNNSI---------DYEGPRTAEAIVQFMIKQSQPAVAVVAD---LPAYLANETFVTPVIVQSGKID  152 (504)
T ss_dssp             CSSSEEEEEETTCTTCEE---------ECCSCCSHHHHHHHHHHHTSCSEEECSC---HHHHHHHSCCSSCEEEEEESCC
T ss_pred             CcCCEEEEEeCCccccce---------eecCCCCHHHHHHHHHHhcCCcceeHHH---HHHHHhcCCCceEEEEEeCCCC
Confidence            48999999999984  22         4999999999999999999999999987   888888888  89999999877


Q ss_pred             cchHHHHHHHh-ccCCCceEEEeCcHHHHhHcCCCCCCCCCeEEEEecCCCceecccCCC-C---CHHHHHHHHHhcCCC
Q 013976           77 GSESEVLADAS-RLEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFADGK-F---DKSTIADFVFSNKLP  151 (432)
Q Consensus        77 ~~~~~~f~~~a-~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~i~l~~~~~~~~~~y~~g~-~---~~~~l~~fi~~~~~p  151 (432)
                      ......|..+| .+++++.|+++.  ++++++++.       +++|+..+ ....| .|. +   +.+.|..||..++.|
T Consensus       153 ~~~~~~f~~~A~~~~~~~~F~~~~--~~~~~~~~~-------i~l~~~~~-~~~~~-~g~~~~~~~~~~l~~fi~~~~~p  221 (504)
T 2b5e_A          153 ADFNATFYSMANKHFNDYDFVSAE--NADDDFKLS-------IYLPSAMD-EPVVY-NGKKADIADADVFEKWLQVEALP  221 (504)
T ss_dssp             HHHHHHHHHHHHHTTTTCEEEEEE--CTTSCCEEE-------EEETTEEE-EEEEC-CSCHHHHTSHHHHHHHHHHHSSC
T ss_pred             chHHHHHHHHHHHhhcCcEEEEEH--HHHHhcCCe-------EEecCCCC-ccccc-CCcccccCCHHHHHHHHHhcccC
Confidence            88899999999 788999999887  677666642       88888866 77788 888 7   999999999999999


Q ss_pred             ceeecCCCchhhhccCCCcceEEEEEeCcchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEE
Q 013976          152 LVTIFTRENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLA  231 (432)
Q Consensus       152 ~v~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~  231 (432)
                      ++.+++.+++..++..+.+.+++++......+.+...++++|+++++++.|+++|+..   ++.+++.||+ ....|+++
T Consensus       222 ~v~~~t~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~a~~~~~~i~F~~id~~~---~~~~~~~~gl-~~~~P~v~  297 (504)
T 2b5e_A          222 YFGEIDGSVFAQYVESGLPLGYLFYNDEEELEEYKPLFTELAKKNRGLMNFVSIDARK---FGRHAGNLNM-KEQFPLFA  297 (504)
T ss_dssp             SSCBCCHHHHHHHHHTTSCEEEEEESSHHHHHHHHHHHHHHHHHTTTTCEEEEEEHHH---HTTHHHHTTC-CSCSSEEE
T ss_pred             CcccCCHhHHHHHhcCCCcEEEEEecCcccHHHHHHHHHHHHHhcCCeeEEEEEehhh---hHHHHHHcCC-cccCCEEE
Confidence            9999999999999988876666665443444788999999999999999999999987   5589999999 76789999


Q ss_pred             EEeCCCCceecCC--CC-----------CCHHHHHHHHHHHhcCCcCccccCCCCCCCCCCceEEEecccchhhhhcCCC
Q 013976          232 YTGNDDAKKHILD--GE-----------LTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESK  298 (432)
Q Consensus       232 i~~~~~~~~y~~~--~~-----------~~~~~i~~fi~~~~~g~l~~~~~se~~p~~~~~~v~~l~~~~~~~~~~~~~~  298 (432)
                      +++...+.+|.+.  ++           ++.+.|.+|+.+++.|++.|..+|+++|....+.|..|++.+|++.+.+.++
T Consensus       298 i~~~~~~~ky~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~~~~g~~~p~~~s~~~p~~~~~~v~~l~~~~f~~~v~~~~k  377 (504)
T 2b5e_A          298 IHDMTEDLKYGLPQLSEEAFDELSDKIVLESKAIESLVKDFLKGDASPIVKSQEIFENQDSSVFQLVGKNHDEIVNDPKK  377 (504)
T ss_dssp             EEETTTTEEEECCCCCHHHHHTCCSCCCCCHHHHHHHHHHHHHTCCCCCCCCCCCCCCCSCSEEEECTTTHHHHHHCTTC
T ss_pred             EEeCCcCcccCCCCCccchhhccccccccCHHHHHHHHHHHHcCCCChhhhcCCCCccccccceecccccHHHhhccCCC
Confidence            9988667788876  66           8999999999999999999999999999888889999999999999888889


Q ss_pred             cEEEEEeCCCChhhhhhHHHHHHHHHHhc-CCCCEEEEEEeCCCcccccCCCCCCceEEEEeCCCcccCceeccCCCCHH
Q 013976          299 DVLLEIYAPWCGHCQAFEPTYNKLAKHLR-GVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVV  377 (432)
Q Consensus       299 ~~lv~f~~~~c~~c~~~~~~~~~la~~~~-~~~~~~~~~id~~~~~~~~~~i~~~P~i~~~~~g~~~~~~~~y~g~~~~~  377 (432)
                      ++||.|||+||++|+.+.|.|.+++..+. ...++.++.+|++.++...++|.++||+++|++|+.. .+..|.|.++.+
T Consensus       378 ~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~~~~~v~~~Pt~~~~~~G~~~-~~~~~~G~~~~~  456 (504)
T 2b5e_A          378 DVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTENDVRGVVIEGYPTIVLYPGGKKS-ESVVYQGSRSLD  456 (504)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGGCCCSSCCCSSSSEEEEECCTTSC-CCCBCCSCCCHH
T ss_pred             CEEEEEECCCChhHHHHhHHHHHHHHHhhccCCcEEEEEecCCccccccCCceecCeEEEEeCCcee-cceEecCCCCHH
Confidence            99999999999999999999999999987 4347999999999988866999999999999998764 466899999999


Q ss_pred             HHHHHHHhcCCCCCcc
Q 013976          378 ALYKFLKKNASIPFKI  393 (432)
Q Consensus       378 ~l~~fi~~~~~~~~~~  393 (432)
                      .|.+||++++......
T Consensus       457 ~l~~~i~~~~~~~~~~  472 (504)
T 2b5e_A          457 SLFDFIKENGHFDVDG  472 (504)
T ss_dssp             HHHHHHHHHCTTCCCH
T ss_pred             HHHHHHHhcCCCCCCH
Confidence            9999999998877644

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=100.00  E-value=4.3e-40  Score=344.23  Aligned_cols=346  Identities=17%  Similarity=0.253  Sum_probs=292.0

Q ss_pred             CCCcceeeeccCcccccCCCcccCccCCCCCChhHHHHHHHHhhCCCceeeCCH---HHHHHHhhcCCeEEEEEecCCCc
Q 013976            1 MSWRTSTTFRASRRFTSSSTASIKLIMAAAPSKDAIVTWIKKKIGPGIYNITTL---DEAERVLTSETKVVLGYLNSLVG   77 (432)
Q Consensus         1 ~~~Ptl~~f~~g~~~~~~~~~~~~~~Y~G~~~~~~i~~~l~~~~~~~~~~i~~~---~~l~~~~~~~~~~vv~f~~~~~~   77 (432)
                      .+|||+++|++|+...         .|.|.++++.|++||.+++.+++..|++.   +++++++..+.+.||+|++....
T Consensus       186 ~~~Pt~~~~~~g~~~~---------~~~G~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~vi~f~~~~~~  256 (780)
T 3apo_A          186 NSYPSLFIFRSGMAAV---------KYNGDRSKESLVAFAMQHVRSTVTELSTGNFVNAIETAFAAGVGWLITFCSKGED  256 (780)
T ss_dssp             ---CEEEEECTTSCCE---------ECCSCSCHHHHHHHHHTTSCCCEEECCHHHHHHHHHHHHHHTCEEEEEEECTTSC
T ss_pred             ceeeeEEEEeCCcEee---------EecCCCCHHHHHHHHHHhchhhheeccchhhHHHHHhhhccCCCEEEEEecCccc
Confidence            4799999999998643         49999999999999999999999999887   78888888888889999876431


Q ss_pred             -chHHHHHH-----------------------------------------------------------------------
Q 013976           78 -SESEVLAD-----------------------------------------------------------------------   85 (432)
Q Consensus        78 -~~~~~f~~-----------------------------------------------------------------------   85 (432)
                       +....+.+                                                                       
T Consensus       257 ~~~~~~~~~l~~~f~~~~~f~~v~c~~~~~l~~~~gi~~~p~~~f~~~~~~~~~~~~~~~y~g~~~~~~i~~~i~~~~p~  336 (780)
T 3apo_A          257 CLTSQTRLRLSGMLDGLVNVGWVDCDAQDSLCKSLDTTASTTAYFPPGATLNDREKSSVLFLNSLDAKEIYMEIIHNLPD  336 (780)
T ss_dssp             CCCHHHHHHHHHHTTTTEEEEEEETTTSHHHHTCC-----CEEEECTTCCSSTTTGGGSEEECCCCHHHHHHHHHHHSCC
T ss_pred             ccCHHHHHHHHHHhhccceEEEEEcCCCHHHHHHhCCCCCceeeeccccccCCCcccceeccccccHHHHHHHHHHhCCC
Confidence             11111111                                                                       


Q ss_pred             -------------------------------------Hh-ccC-CCceEEEe---CcHHHHhHcCCCCCCCCCeEEEEec
Q 013976           86 -------------------------------------AS-RLE-DDVNFYQT---TNPDVAKIFHLDSKVNRPALVMVKK  123 (432)
Q Consensus        86 -------------------------------------~a-~~~-~~~~F~~~---~~~~~~~~~~~~~~~~~p~i~l~~~  123 (432)
                                                           +| .++ ..+.|+.+   .++.+|+++++..    |++++|+.
T Consensus       337 v~~it~~~f~~~~~~~~~lv~F~~~~~~~~~~~~~~~~A~~~~~~~i~f~~~D~~~~~~~~~~~~~~~----p~i~l~~~  412 (780)
T 3apo_A          337 FELLSANQLEDRLAHHRWLVFFHFGKNENANDPELKKLKTLLKNEHIQVVRFDCSSAPGICSDLYVFQ----PSLAVFKG  412 (780)
T ss_dssp             CCEECHHHHHHHHTTSEEEEEEECC-----CCGGGGGHHHHHGGGTEEEEEEEGGGCHHHHHHTTCCS----CEEEEEES
T ss_pred             cccCCHHHHHHHhccCCeEEEEecCCccccchHHHHHHHHhhccCceeEEEEeCCCchhhHhhccccC----ChhhhccC
Confidence                                                 22 111 34667765   4567899999875    99999998


Q ss_pred             CC-CceecccCCCCCHHHHHHHHHhcCCCceeecCCCchhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceE
Q 013976          124 ET-EKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLI  201 (432)
Q Consensus       124 ~~-~~~~~y~~g~~~~~~l~~fi~~~~~p~v~~l~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~  201 (432)
                      .+ +....| .|.++.++|..|+..+..|.+.+++.+++..+  .+.++++.||++| ++|+.+.+.|.++|+++++++.
T Consensus       413 ~~~e~~~~~-~g~~~~~~i~~f~~~~~~~~v~~l~~~~~~~~--~~~~vlv~F~a~wC~~c~~~~p~~~~~a~~~~~~v~  489 (780)
T 3apo_A          413 QGTKEYEIH-HGKKILYDILAFAKESVNSHVTTLGPQNFPAS--DKEPWLVDFFAPWSPPSRALLPELRKASTLLYGQLK  489 (780)
T ss_dssp             STTSSEEEC-CSCCCHHHHHHHHHHHHTSCEEECCTTTSCTT--CCSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCE
T ss_pred             CCcceeeec-ccHhhHHHHHHHhhhccCCCCEecCHHHHHHc--CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeE
Confidence            77 557788 89999999999999999999999999999887  6668899999999 9999999999999999999999


Q ss_pred             EEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCceecCCCCCCHHHHHHHHHHHhcCCcCccccCCCCCCCCCCce
Q 013976          202 FVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDV  281 (432)
Q Consensus       202 f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g~l~~~~~se~~p~~~~~~v  281 (432)
                      |+.+|+++   .+.+++.|||++.  |+++++..+  ..+.+.|.++.++|.+|++++++                 +.|
T Consensus       490 ~~~vd~~~---~~~~~~~~~v~~~--Pt~~~~~~g--~~~~~~g~~~~~~l~~fi~~~~~-----------------~~v  545 (780)
T 3apo_A          490 VGTLDCTI---HEGLCNMYNIQAY--PTTVVFNQS--SIHEYEGHHSAEQILEFIEDLRN-----------------PSV  545 (780)
T ss_dssp             EEEEETTT---CHHHHHHTTCCSS--SEEEEEETT--EEEEECSCSCHHHHHHHHHHHHS-----------------CSE
T ss_pred             EEEEeCCC---CHHHHHHcCCCcC--CeEEEEcCC--ceeeecCcccHHHHHHHHHhhcc-----------------cce
Confidence            99999997   5689999999997  999998653  45788999999999999999986                 248


Q ss_pred             EEEecccchhhhhcC--CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEE
Q 013976          282 KIVVGNNFDEIVLDE--SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILF  357 (432)
Q Consensus       282 ~~l~~~~~~~~~~~~--~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~  357 (432)
                      ..|++++|++++.+.  +..++|.||+|||++|+.+.|.|.++|+.+++  ++.|+.+||+.+..  ..++|.++|++++
T Consensus       546 ~~l~~~~f~~~v~~~~~~~~~lv~F~ap~C~~c~~~~p~~~~lA~~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pti~~  623 (780)
T 3apo_A          546 VSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTG--LINVGSVDCGQYHSFCTQENVQRYPEIRF  623 (780)
T ss_dssp             EECCHHHHHHHTTTCCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHTT--TSEEEEEETTTTHHHHHHTTCCSSSEEEE
T ss_pred             eecCcccHHHHhhccCCCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhC--CeEEEEEECcchHHHHHHcCCCCCCeEEE
Confidence            889999999988654  46789999999999999999999999999987  69999999998876  6799999999999


Q ss_pred             EeCCCcc-cCceeccC-CCCHHHHHHHHHhcCC
Q 013976          358 FPAGNKS-FDPINVDV-DRTVVALYKFLKKNAS  388 (432)
Q Consensus       358 ~~~g~~~-~~~~~y~g-~~~~~~l~~fi~~~~~  388 (432)
                      |+.|... .+++.|.| .++.+.|.+||.++..
T Consensus       624 ~~~~~~~~~~~~~y~g~~~~~~~l~~fi~~~~~  656 (780)
T 3apo_A          624 YPQKSSKAYQYHSYNGWNRDAYSLRSWGLGFLP  656 (780)
T ss_dssp             ECCCSSSCCSCEECCCSCCSHHHHHHHHHTTSC
T ss_pred             EcCCCcCccchhhcCCCCCCHHHHHHHHhhhcc
Confidence            9987652 14678999 8999999999999873

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=100.00  E-value=4.9e-36  Score=313.51  Aligned_cols=342  Identities=14%  Similarity=0.254  Sum_probs=289.9

Q ss_pred             CcceeeeccCc-ccccCCCcccCccCCCCCChhHHHHHHHHhhCCCceeeCCHHHHHHHhhcCCeEEEEEecCCCcc---
Q 013976            3 WRTSTTFRASR-RFTSSSTASIKLIMAAAPSKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNSLVGS---   78 (432)
Q Consensus         3 ~Ptl~~f~~g~-~~~~~~~~~~~~~Y~G~~~~~~i~~~l~~~~~~~~~~i~~~~~l~~~~~~~~~~vv~f~~~~~~~---   78 (432)
                      .|++.+|+.+. .-.        ..|.|..+.+.|.+|+.....+.+..++ .+.+.++  ..+.++|.|+.+.|.+   
T Consensus       404 ~p~i~l~~~~~~e~~--------~~~~g~~~~~~i~~f~~~~~~~~v~~l~-~~~~~~~--~~~~vlv~F~a~wC~~c~~  472 (780)
T 3apo_A          404 QPSLAVFKGQGTKEY--------EIHHGKKILYDILAFAKESVNSHVTTLG-PQNFPAS--DKEPWLVDFFAPWSPPSRA  472 (780)
T ss_dssp             SCEEEEEESSTTSSE--------EECCSCCCHHHHHHHHHHHHTSCEEECC-TTTSCTT--CCSCEEEEEECTTCHHHHH
T ss_pred             CChhhhccCCCccee--------eecccHhhHHHHHHHhhhccCCCCEecC-HHHHHHc--CCCeEEEEEECCCCHHHHH
Confidence            38999998754 101        1388999999999999999999998886 4566665  5678889999888864   


Q ss_pred             hHHHHHHHh-ccCCCceEEEeC---cHHHHhHcCCCCCCCCCeEEEEecCCCceecccCCCCCHHHHHHHHHhcCCCcee
Q 013976           79 ESEVLADAS-RLEDDVNFYQTT---NPDVAKIFHLDSKVNRPALVMVKKETEKISYFADGKFDKSTIADFVFSNKLPLVT  154 (432)
Q Consensus        79 ~~~~f~~~a-~~~~~~~F~~~~---~~~~~~~~~~~~~~~~p~i~l~~~~~~~~~~y~~g~~~~~~l~~fi~~~~~p~v~  154 (432)
                      +...|.++| .+++.+.|+.+.   ++.+++.||+..   .|++++++.  +....| .|..+.++|..||.....|.|.
T Consensus       473 ~~p~~~~~a~~~~~~v~~~~vd~~~~~~~~~~~~v~~---~Pt~~~~~~--g~~~~~-~g~~~~~~l~~fi~~~~~~~v~  546 (780)
T 3apo_A          473 LLPELRKASTLLYGQLKVGTLDCTIHEGLCNMYNIQA---YPTTVVFNQ--SSIHEY-EGHHSAEQILEFIEDLRNPSVV  546 (780)
T ss_dssp             HHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCS---SSEEEEEET--TEEEEE-CSCSCHHHHHHHHHHHHSCSEE
T ss_pred             HhHHHHHHHHHhcCCeEEEEEeCCCCHHHHHHcCCCc---CCeEEEEcC--Cceeee-cCcccHHHHHHHHHhhccccee
Confidence            556788888 566789998853   567999999986   799999975  334678 8999999999999999999999


Q ss_pred             ecCCCchhhhccC---CCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEE
Q 013976          155 IFTRENAPSVFES---PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVL  230 (432)
Q Consensus       155 ~l~~~~~~~~~~~---~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i  230 (432)
                      .++.+++..+...   +..+++.||++| ++|+++.+.|+++|+.+++++.|+.+||+.   +..+|+.++++++  |++
T Consensus       547 ~l~~~~f~~~v~~~~~~~~~lv~F~ap~C~~c~~~~p~~~~lA~~~~~~v~~~~vd~~~---~~~l~~~~~v~~~--Pti  621 (780)
T 3apo_A          547 SLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTGLINVGSVDCGQ---YHSFCTQENVQRY--PEI  621 (780)
T ss_dssp             ECCHHHHHHHTTTCCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEETTT---THHHHHHTTCCSS--SEE
T ss_pred             ecCcccHHHHhhccCCCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhCCeEEEEEECcc---hHHHHHHcCCCCC--CeE
Confidence            9999999987654   345688899999 999999999999999999999999999998   5688999999997  999


Q ss_pred             EEEeCCCC---ceecCCC-CCCHHHHHHHHHHHhcCCcCccccCCCCCCCCCCceEEEecccchhhhhcCCCcEEEEEeC
Q 013976          231 AYTGNDDA---KKHILDG-ELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYA  306 (432)
Q Consensus       231 ~i~~~~~~---~~y~~~~-~~~~~~i~~fi~~~~~g~l~~~~~se~~p~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~  306 (432)
                      +++..+..   ....|.| .++.++|.+|+.+.+.                 +.+..++..+|.+.+.+.+++++|.||+
T Consensus       622 ~~~~~~~~~~~~~~~y~g~~~~~~~l~~fi~~~~~-----------------~~v~~l~~~~~~~~~~~~~~~v~v~F~a  684 (780)
T 3apo_A          622 RFYPQKSSKAYQYHSYNGWNRDAYSLRSWGLGFLP-----------------QASIDLTPQTFNEKVLQGKTHWVVDFYA  684 (780)
T ss_dssp             EEECCCSSSCCSCEECCCSCCSHHHHHHHHHTTSC-----------------CCSEEECHHHHHHHTTTCSSCEEEEEEC
T ss_pred             EEEcCCCcCccchhhcCCCCCCHHHHHHHHhhhcc-----------------cccccCCHHHHHHHHhcCCCeEEEEEEC
Confidence            99976543   2455788 8999999999999753                 2367899999998777778999999999


Q ss_pred             CCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCcccCceeccC----CCCHHHHH
Q 013976          307 PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDV----DRTVVALY  380 (432)
Q Consensus       307 ~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~~~g~~~~~~~~y~g----~~~~~~l~  380 (432)
                      +||++|+.+.|.|.+++..+++  ++.|+.+|++.+..  .+++|.++|++++|++|..+.   .+.|    .++.+.|.
T Consensus       685 ~wC~~C~~~~p~~~~la~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~---~~~G~~~g~~~~~~l~  759 (780)
T 3apo_A          685 PWSGPSQNFAPEFELLARMIKG--KVRAGKVDCQAYPQTCQKAGIKAYPSVKLYQYERAKK---SIWEEQINSRDAKTIA  759 (780)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTT--TCEEEEEETTTCHHHHHHTTCCSSSEEEEEEEETTTT---EEEEEEECCCCHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhcC--CceEEEEECCCCHHHHHhcCCCcCCEEEEEcCCCccc---cccCcccCCcCHHHHH
Confidence            9999999999999999999987  69999999998876  689999999999999988764   4555    58999999


Q ss_pred             HHHHhcCC
Q 013976          381 KFLKKNAS  388 (432)
Q Consensus       381 ~fi~~~~~  388 (432)
                      +||++++.
T Consensus       760 ~~l~~~l~  767 (780)
T 3apo_A          760 ALIYGKLE  767 (780)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHHH
Confidence            99999974

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=100.00  E-value=2.8e-33  Score=266.22  Aligned_cols=248  Identities=16%  Similarity=0.222  Sum_probs=215.3

Q ss_pred             CCCcceeeeccCcccccCCCcccCccCCCCCChhHHHHHHHHhhCCCceeeCCHHHHHHHhh-cCCeEEEEEecCCCcch
Q 013976            1 MSWRTSTTFRASRRFTSSSTASIKLIMAAAPSKDAIVTWIKKKIGPGIYNITTLDEAERVLT-SETKVVLGYLNSLVGSE   79 (432)
Q Consensus         1 ~~~Ptl~~f~~g~~~~~~~~~~~~~~Y~G~~~~~~i~~~l~~~~~~~~~~i~~~~~l~~~~~-~~~~~vv~f~~~~~~~~   79 (432)
                      .|||||++|++|+...          |.|.|+++.|++||+++++|++..|++.++++++++ .+++++|+||.+.+.+.
T Consensus        90 ~~~PTl~~f~~G~~~~----------y~G~~~~~~i~~~i~~~~~~~v~~i~~~~~~~~~~~~~~~~~vv~ff~~~~~~~  159 (367)
T 3us3_A           90 TEEDSIYVFKEDEVIE----------YDGEFSADTLVEFLLDVLEDPVELIEGERELQAFENIEDEIKLIGYFKNKDSEH  159 (367)
T ss_dssp             CSTTEEEEEETTEEEE----------CCSCCSHHHHHHHHHHHHSCSEEECCSHHHHHHHHHCCSSCEEEEECSCTTCHH
T ss_pred             CcCceEEEEECCcEEE----------eCCCCCHHHHHHHHHHhcCCCcEEcCCHHHHHHHhccCCCcEEEEEECCCCchH
Confidence            4899999999998766          999999999999999999999999999999999998 68999999999988899


Q ss_pred             HHHHHHHh-ccCCCceEEEeCcHHHHhHcCCCCCCCCCeEEEEecCCCceecccCCC-CCHHHHHHHHHhcCCCceeecC
Q 013976           80 SEVLADAS-RLEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFADGK-FDKSTIADFVFSNKLPLVTIFT  157 (432)
Q Consensus        80 ~~~f~~~a-~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~i~l~~~~~~~~~~y~~g~-~~~~~l~~fi~~~~~p~v~~l~  157 (432)
                      +..|.++| .+++++.|+++++.++++++++..    |+|++|+..++....| .|. ++.++|.+||..++.|+|.+++
T Consensus       160 ~~~f~~~A~~~~~~~~F~~~~~~~~~~~~~v~~----p~i~lf~~~~~~~~~y-~g~~~~~~~l~~fi~~~~~p~v~elt  234 (367)
T 3us3_A          160 YKAFKEAAEEFHPYIPFFATFDSKVAKKLTLKL----NEIDFYEAFMEEPVTI-PDKPNSEEEIVNFVEEHRRSTLRKLK  234 (367)
T ss_dssp             HHHHHHHHHHHTTTSCEEEECCHHHHHHHTCCT----TCEEEECTTCSSCEEC-SSSSCCHHHHHHHHHHTCSCSEEECC
T ss_pred             HHHHHHHHHhhcCCcEEEEECCHHHHHHcCCCC----CeEEEEcCCCCCCeec-CCCCCCHHHHHHHHHHcCccceeecC
Confidence            99999999 788999999999999999999985    9999999877788899 774 8999999999999999999999


Q ss_pred             CCchhhhccCCC-cceEEEEEe-C-cchhhhHHHHHHHHHhccC--ceEEEEEecCCcccccchh----hhhCCCCCCCc
Q 013976          158 RENAPSVFESPI-KNQLLLFAV-S-NDSEKLLPVFEEAAKSFKG--KLIFVYVQMDNEDVGKPVS----EYFGITGEAPK  228 (432)
Q Consensus       158 ~~~~~~~~~~~~-~~~i~~~~~-~-~~~~~~~~~~~~~a~~~~~--~i~f~~vd~~~~~~~~~l~----~~~~i~~~~~P  228 (432)
                      .+++..++.... ..++++|.+ + ..+.++...++++|++|++  ++.|+++|+...   ...+    +.||+.. ..|
T Consensus       235 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~vA~~~~~~~ki~F~~id~~~~---~~~l~~~~~~fgl~~-~~P  310 (367)
T 3us3_A          235 PESMYETWEDDMDGIHIVAFAEEADPDGYEFLEILKSVAQDNTDNPDLSIIWIDPDDF---PLLVPYWEKTFDIDL-SAP  310 (367)
T ss_dssp             GGGHHHHHHSCBTTEEEEEECCTTSHHHHHHHHHHHHHHHHTTTCTTCCEEEECGGGC---TTTHHHHHHHHTCCT-TSC
T ss_pred             hhhHHHHHhhccCCcEEEEEEcCCChhHHHHHHHHHHHHHHcCCCCceEEEEECCccc---hhHHHHHHHhcCCCC-CCC
Confidence            999988776432 234444444 4 5688999999999999998  799999999984   3444    4599983 579


Q ss_pred             EEEEEeCCCC--ceecCCC---CCCHHHHHHHHHHHhcCCcCcc
Q 013976          229 VLAYTGNDDA--KKHILDG---ELTLDKIKTFGEDFLEGKLKPF  267 (432)
Q Consensus       229 ~i~i~~~~~~--~~y~~~~---~~~~~~i~~fi~~~~~g~l~~~  267 (432)
                      ++++++...+  .+|.+.+   .++.++|.+|++++++|+++|.
T Consensus       311 ~~~i~~~~~~~~~~y~~~~~~~~~t~~~i~~F~~~~~~Gkl~p~  354 (367)
T 3us3_A          311 QIGVVNVTDADSVWMEMDDEEDLPSAEELEDWLEDVLEGEINTE  354 (367)
T ss_dssp             EEEEEETTTCCEEECCCCTTSCCCCHHHHHHHHHHHHHTSSCC-
T ss_pred             eEEEEecccccceeecCCcccccCCHHHHHHHHHHHHcCCcCcc
Confidence            9999987665  4676764   6999999999999999999985

>3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic reticulum, glycoprotein, redox-active center; 1.92A {Rattus norvegicus}

Probab=100.00  E-value=1e-31  Score=241.72  Aligned_cols=229  Identities=24%  Similarity=0.371  Sum_probs=185.2

Q ss_pred             hhCCCceeeCCHHHHHHHhhc-CCeEEEEEecCCCcchHHHHHHHh-ccCCCceEEEeCcHHHHhHcCCCCCCCCCeEEE
Q 013976           43 KIGPGIYNITTLDEAERVLTS-ETKVVLGYLNSLVGSESEVLADAS-RLEDDVNFYQTTNPDVAKIFHLDSKVNRPALVM  120 (432)
Q Consensus        43 ~~~~~~~~i~~~~~l~~~~~~-~~~~vv~f~~~~~~~~~~~f~~~a-~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~i~l  120 (432)
                      +++|+++.|++.+++++|++. +++++||||.+.+++.++.|.++| .+++++.|+++++++++++++++.    |+|++
T Consensus         3 ~~gP~v~~l~s~~~~~~~~~~~~~v~vVgff~~~~~~~~~~F~~~A~~lr~~~~F~~t~~~~v~~~~~v~~----p~ivl   78 (250)
T 3ec3_A            3 LGSPPSKEILTLKQVQEFLKDGDDVVILGVFQGVGDPGYLQYQDAANTLREDYKFHHTFSTEIAKFLKVSL----GKLVL   78 (250)
T ss_dssp             --CCSSEECCCHHHHHHHHHHCSSCEEEEECSCTTCHHHHHHHHHHHHHTTTCCEEEECCHHHHHHHTCCS----SEEEE
T ss_pred             CCCCCceecCCHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHHHHHHhhhcCcEEEEECcHHHHHHcCCCC----CeEEE
Confidence            578999999999999999998 999999999999999999999999 788999999999999999999976    99999


Q ss_pred             Eec------CCCceecccC--CCCCHHHHHHHHHhcCCCceeecCCCchhhhccCCCcceEEEEEeC------cchhhhH
Q 013976          121 VKK------ETEKISYFAD--GKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVS------NDSEKLL  186 (432)
Q Consensus       121 ~~~------~~~~~~~y~~--g~~~~~~l~~fi~~~~~p~v~~l~~~~~~~~~~~~~~~~i~~~~~~------~~~~~~~  186 (432)
                      ||+      .++....| .  |.++.++|.+||..+++|+|.+++.+++..++. +.+..++|+...      ..++.++
T Consensus        79 fk~~~~~~kfde~~~~y-~g~~~~~~~~l~~fi~~~~~Plv~e~t~~n~~~~~~-~~~l~~~~~~~d~~~~~~~~~~~~~  156 (250)
T 3ec3_A           79 MQPEKFQSKYEPRMHVM-DVQGSTEASAIKDYVVKHALPLVGHRKTSNDAKRYS-KRPLVVVYYSVDFSFDYRTATQFWR  156 (250)
T ss_dssp             ECCGGGCCTTSCSCEEE-ECCTTSCHHHHHHHHHHHSSCTEEEECTTTHHHHSC-SSSEEEEEECCCCSTTTHHHHHHHH
T ss_pred             Eecchhhccccccceec-cCCCCCCHHHHHHHHHHcCCCceeecCccchhhhhc-cCccEEEEEecccccccchhHHHHH
Confidence            996      35677888 6  589999999999999999999999999998874 556666655432      2346688


Q ss_pred             HHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCC-CcEEEEEeCCCCceecCC-CCCCHHHHHHHHHHHhcCCc
Q 013976          187 PVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEA-PKVLAYTGNDDAKKHILD-GELTLDKIKTFGEDFLEGKL  264 (432)
Q Consensus       187 ~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~-~P~i~i~~~~~~~~y~~~-~~~~~~~i~~fi~~~~~g~l  264 (432)
                      ..++++|++|+ ++.|+++|+.+   +.+.++.||+.... +|.+++++ ..+.+|.+. +.++.++|.+|++++++|++
T Consensus       157 ~~~~~vAk~~k-ki~F~~~d~~~---~~~~l~~fgl~~~~~~p~~~~~~-~~~~ky~~~~~~~t~~~i~~Fv~~~~~Gkl  231 (250)
T 3ec3_A          157 NKVLEVAKDFP-EYTFAIADEED---YATEVKDLGLSESGGDVNAAILD-ESGKKFAMEPEEFDSDALREFVMAFKKGKL  231 (250)
T ss_dssp             HHHHHHHTTCT-TSEEEEEETTT---THHHHHHTTCSSCSCSCEEEEEC-TTSCEEECCCCSCCHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHhhc-ceeEEEEcHHH---HHHHHHHcCCCccCCCcEEEEEc-CCCceecCCcccCCHHHHHHHHHHHHCCCc
Confidence            99999999999 99999999987   44678999998653 35776665 456789887 68999999999999999999


Q ss_pred             CccccCCCCCCCCCCceE
Q 013976          265 KPFFKSDPIPETNDGDVK  282 (432)
Q Consensus       265 ~~~~~se~~p~~~~~~v~  282 (432)
                      +|+++|||+|+.++++|.
T Consensus       232 ~p~~kSepiPe~~~~pV~  249 (250)
T 3ec3_A          232 KPVIKSQPVPKNNKGAAA  249 (250)
T ss_dssp             CCCC--------------
T ss_pred             cceeecCCCCCCCCCCCC
Confidence            999999999998776653

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=100.00  E-value=1.5e-31  Score=253.39  Aligned_cols=246  Identities=16%  Similarity=0.239  Sum_probs=213.4

Q ss_pred             CCCcceeeeccCcccccCCCcccCccCCCCCChhHHHHHHHHhhCCCceeeCCHHHHHHHhh-cCCeEEEEEecCCCcch
Q 013976            1 MSWRTSTTFRASRRFTSSSTASIKLIMAAAPSKDAIVTWIKKKIGPGIYNITTLDEAERVLT-SETKVVLGYLNSLVGSE   79 (432)
Q Consensus         1 ~~~Ptl~~f~~g~~~~~~~~~~~~~~Y~G~~~~~~i~~~l~~~~~~~~~~i~~~~~l~~~~~-~~~~~vv~f~~~~~~~~   79 (432)
                      .||||+++|++|+...          |.|.|+++.|++||.++++|++..|++.+++++++. ++++++|+||.+.+.+.
T Consensus        88 ~~~Pt~~~~~~g~~~~----------~~G~~~~~~l~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~vv~ff~~~~~~~  157 (350)
T 1sji_A           88 DEEGSLYVLKGDRTIE----------FDGEFAADVLVEFLLDLIEDPVEIINSKLEVQAFERIEDQIKLIGFFKSEESEY  157 (350)
T ss_dssp             CSTTEEEEEETTEEEE----------ECSCCCHHHHHHHHHTTSSCSEEECCSHHHHHHHHHCCSSCEEEEECSCTTSHH
T ss_pred             CccceEEEEECCcEEE----------ecCCCCHHHHHHHHHHhcCCcceeccchHHHHHHhccCCCcEEEEEECCCCcHH
Confidence            4899999999998554          999999999999999999999999999999999998 78899999999988889


Q ss_pred             HHHHHHHh-ccCCCceEEEeCcHHHHhHcCCCCCCCCCeEEEEecCCCceecccCCC-CCHHHHHHHHHhcCCCceeecC
Q 013976           80 SEVLADAS-RLEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFADGK-FDKSTIADFVFSNKLPLVTIFT  157 (432)
Q Consensus        80 ~~~f~~~a-~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~i~l~~~~~~~~~~y~~g~-~~~~~l~~fi~~~~~p~v~~l~  157 (432)
                      +..|.++| .+++++.|+.+.++++++++++..    |+|++|++.++....| .|. ++.++|.+||..++.|++.+++
T Consensus       158 ~~~~~~~A~~~~~~~~f~~~~~~~~~~~~~v~~----p~i~~~~~~~~~~~~y-~g~~~~~~~l~~fi~~~~~p~v~elt  232 (350)
T 1sji_A          158 YKAFEEAAEHFQPYIKFFATFDKGVAKKLSLKM----NEVDFYEPFMDEPIAI-PDKPYTEEELVEFVKEHQRPTLRRLR  232 (350)
T ss_dssp             HHHHHHHHHHTTTTSEEEEECCHHHHHHHTCCT----TCEEEECTTCSSCEEC-SSSSCCHHHHHHHHHHHCCCSEEECC
T ss_pred             HHHHHHHHHhhccCcEEEEECCHHHHHHcCCCC----CcEEEEeCCCCCceec-CCCCCCHHHHHHHHHHcCccchhhcC
Confidence            99999999 677999999999999999999973    9999999877778889 887 8999999999999999999999


Q ss_pred             CCchhhhccCCC-cceEEEEEe-C-cchhhhHHHHHHHHHhccC--ceEEEEEecCCcccccchh----hhhCCCCCCCc
Q 013976          158 RENAPSVFESPI-KNQLLLFAV-S-NDSEKLLPVFEEAAKSFKG--KLIFVYVQMDNEDVGKPVS----EYFGITGEAPK  228 (432)
Q Consensus       158 ~~~~~~~~~~~~-~~~i~~~~~-~-~~~~~~~~~~~~~a~~~~~--~i~f~~vd~~~~~~~~~l~----~~~~i~~~~~P  228 (432)
                      .+++..++..+. +..+++|.. + .+|..+.+.++++|+++++  ++.|+++|+..   ++.++    +.||++. ..|
T Consensus       233 ~~~~~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~~~~vA~~~~~~~~~~f~~id~~~---~~~~~~~~~~~~gi~~-~~P  308 (350)
T 1sji_A          233 PEDMFETWEDDLNGIHIVAFAERSDPDGYEFLEILKQVARDNTDNPDLSIVWIDPDD---FPLLVAYWEKTFKIDL-FKP  308 (350)
T ss_dssp             TTTHHHHHHSCSSSEEEEEECCTTSHHHHHHHHHHHHHHHHGGGCSSCCEEEECGGG---CHHHHHHHHHHCCSCT-TSC
T ss_pred             hhhHHHHhcCCCCCcEEEEEEcCCCccHHHHHHHHHHHHHHhCCCCceEEEEECchh---hHHHHHHHHhhcCCCc-cCC
Confidence            999999887654 434444544 3 4578999999999999987  89999999987   45677    7899983 469


Q ss_pred             EEEEEeCCCCceec--CC---CCCCHHHHHHHHHHHhcCCcC
Q 013976          229 VLAYTGNDDAKKHI--LD---GELTLDKIKTFGEDFLEGKLK  265 (432)
Q Consensus       229 ~i~i~~~~~~~~y~--~~---~~~~~~~i~~fi~~~~~g~l~  265 (432)
                      ++++++...+.+|.  +.   +.++.++|.+|++++++|++.
T Consensus       309 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~F~~d~~~Gkl~  350 (350)
T 1sji_A          309 QIGVVNVTDADSVWMEIPDDDDLPTAEELEDWIEDVLSGKIN  350 (350)
T ss_dssp             EEEEEESSSSCEEESCSSCCSCCCCHHHHHHHHHHHHTSCC-
T ss_pred             cEEEEecccccccccCCCcccccCCHHHHHHHHHHHhcCccC
Confidence            99999875554554  43   489999999999999999873

>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.2e-31  Score=241.83  Aligned_cols=231  Identities=19%  Similarity=0.337  Sum_probs=184.2

Q ss_pred             HhhCCCceeeCCHHHHHHHhhcCCeEEEEEecCCCcchHHHHHHHh-ccCCCceEEEeCcHHHHhHcCCCCCCCCCeEEE
Q 013976           42 KKIGPGIYNITTLDEAERVLTSETKVVLGYLNSLVGSESEVLADAS-RLEDDVNFYQTTNPDVAKIFHLDSKVNRPALVM  120 (432)
Q Consensus        42 ~~~~~~~~~i~~~~~l~~~~~~~~~~vv~f~~~~~~~~~~~f~~~a-~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~i~l  120 (432)
                      ++++|+++.|++.++++.|++.+++++||||.+.+++.++.|.++| .+++++.|+++.++++++++++..    |+|++
T Consensus         2 ~~~gP~v~~l~s~~~~~~~l~~~~v~vvgff~~~~~~~~~~f~~~A~~lr~~~~F~~~~~~~v~~~~~~~~----p~i~~   77 (252)
T 2h8l_A            2 PLGSPASVPLRTEEEFKKFISDKDASIVGFFDDSFSEAHSEFLKAASNLRDNYRFAHTNVESLVNEYDDNG----EGIIL   77 (252)
T ss_dssp             ----CCEEECCSHHHHHHHHTSSSCEEEEEESCTTSHHHHHHHHHHHHTTTTSCEEEECCHHHHHHHCSSS----EEEEE
T ss_pred             CcCCCCceeecCHHHHHHHhhcCCeEEEEEECCCCChHHHHHHHHHHhcccCcEEEEEChHHHHHHhCCCC----CcEEE
Confidence            5789999999999999999999999999999998899999999999 778999999999999999999985    99999


Q ss_pred             Eec------CCCceecccCCCCCHHHHHHHHHhcCCCceeecCCCchhhhccCCCcceEEEEEeC-c----chhhhHHHH
Q 013976          121 VKK------ETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVS-N----DSEKLLPVF  189 (432)
Q Consensus       121 ~~~------~~~~~~~y~~g~~~~~~l~~fi~~~~~p~v~~l~~~~~~~~~~~~~~~~i~~~~~~-~----~~~~~~~~~  189 (432)
                      ||+      .++....|..|+++.++|.+||..+++|+|.++|.+++..++.  .+.+++|+... .    ..+.+...+
T Consensus        78 fk~~~~~~kf~e~~~~y~~g~~~~~~l~~fi~~~~~Plv~e~t~~n~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~  155 (252)
T 2h8l_A           78 FRPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQENIFGICPHMTEDNKDLIQG--KDLLIAYYDVDYEKNAKGSNYWRNRV  155 (252)
T ss_dssp             ECCGGGCCTTSCSEEECCCSSCCHHHHHHHHHHHSSCSSCEECTTTHHHHSS--SSEEEEEECCBTTTBHHHHHHHHHHH
T ss_pred             EcchhhcccccccccccCCCCcCHHHHHHHHHhcccCCeeecccccHhhhcC--CCeEEEEeecchhhcchhHHHHHHHH
Confidence            996      3456667734778999999999999999999999999999844  35555555433 2    133588899


Q ss_pred             HHHHHhccCc---eEEEEEecCCcccccchhhhhCC--CCCCCcEEEEEeCCCCceecCCCCCCHHH--HHHHHHHHhcC
Q 013976          190 EEAAKSFKGK---LIFVYVQMDNEDVGKPVSEYFGI--TGEAPKVLAYTGNDDAKKHILDGELTLDK--IKTFGEDFLEG  262 (432)
Q Consensus       190 ~~~a~~~~~~---i~f~~vd~~~~~~~~~l~~~~~i--~~~~~P~i~i~~~~~~~~y~~~~~~~~~~--i~~fi~~~~~g  262 (432)
                      .++|++|+++   +.|+++|+..   +.++++.||+  ....+|+++|++. .+.+|.|.++++.++  |.+|++++++|
T Consensus       156 ~~vA~~~~~k~~~~~F~~~d~~~---~~~~~~~fgl~~~~~~~P~v~i~~~-~~~ky~~~~~~t~~~~~i~~F~~~~~~G  231 (252)
T 2h8l_A          156 MMVAKKFLDAGHKLNFAVASRKT---FSHELSDFGLESTAGEIPVVAIRTA-KGEKFVMQEEFSRDGKALERFLQDYFDG  231 (252)
T ss_dssp             HHHHHHHHHTTCCCEEEEEETTT---THHHHGGGTCCCCSCSSCEEEEECT-TSCEEECCSCCCTTSHHHHHHHHHHHHT
T ss_pred             HHHHHHccccCceEEEEEEchHH---HHHHHHHcCCCCccCCCCEEEEEeC-cCcEecCCcccCcchHHHHHHHHHHHCC
Confidence            9999999987   9999999987   4578999999  5567899999865 457888888899999  99999999999


Q ss_pred             CcCccccCCCCCCCCCCceE
Q 013976          263 KLKPFFKSDPIPETNDGDVK  282 (432)
Q Consensus       263 ~l~~~~~se~~p~~~~~~v~  282 (432)
                      +++|+++||++|+.++++|+
T Consensus       232 kl~~~~kSe~iPe~~~~pV~  251 (252)
T 2h8l_A          232 NLKRYLKSEPIPESNDGAAA  251 (252)
T ss_dssp             CSCCCC--------------
T ss_pred             CccccccCCCCCCCCCCCCC
Confidence            99999999999998777764

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=99.98  E-value=3.8e-32  Score=260.28  Aligned_cols=281  Identities=20%  Similarity=0.224  Sum_probs=205.6

Q ss_pred             CCCcceeeeccCcccccCCCcccCccCCCCCChhHHHHHHHHhhCCCceeeCCHHHHHHHhhcCCeEEEEEecCCCcchH
Q 013976            1 MSWRTSTTFRASRRFTSSSTASIKLIMAAAPSKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNSLVGSES   80 (432)
Q Consensus         1 ~~~Ptl~~f~~g~~~~~~~~~~~~~~Y~G~~~~~~i~~~l~~~~~~~~~~i~~~~~l~~~~~~~~~~vv~f~~~~~~~~~   80 (432)
                      .+|||+++|++|+...        ..|.|.++++.|++||.+++.+++..|++.++++. +..+..++|+||.+.+.+.+
T Consensus        81 ~~~Pt~~~f~~G~~~~--------~~~~G~~~~~~l~~~i~~~~~~~v~~l~~~~~l~~-l~~~~~~~v~ff~~~~~~~~  151 (382)
T 2r2j_A           81 SKYPTLKLFRNGMMMK--------REYRGQRSVKALADYIRQQKSDPIQEIRDLAEITT-LDRSKRNIIGYFEQKDSDNY  151 (382)
T ss_dssp             CEESEEEEEETTEEEE--------EECCSCCSHHHHHHHHHHHHSCCCEEC-------------CCEEEEEESCSSSHHH
T ss_pred             CcCCEEEEEeCCcEee--------eeecCcchHHHHHHHHHHhccCCceecCCHHHHHH-hcCCCCEEEEEECCCCChhH
Confidence            3799999999998763        13999999999999999999999999998888988 67788899999998888889


Q ss_pred             HHHHHHh-ccCCCceEEEeCcHHHHhHcCCCCCCCCCeEEEEecC--CCceecccCCCC-CHHHHHHHHHhcCCCceeec
Q 013976           81 EVLADAS-RLEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKE--TEKISYFADGKF-DKSTIADFVFSNKLPLVTIF  156 (432)
Q Consensus        81 ~~f~~~a-~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~i~l~~~~--~~~~~~y~~g~~-~~~~l~~fi~~~~~p~v~~l  156 (432)
                      +.|.++| .+++++.|+++.+ ++++.+++..   .|  ++|++.  +.....| .|.+ +.++|..||..++.|++.++
T Consensus       152 ~~f~~~A~~~~~~~~F~~~~~-~~~~~~~v~~---~p--i~~~~~~~~~~~~~y-~g~~~~~~~l~~fi~~~~~p~v~el  224 (382)
T 2r2j_A          152 RVFERVANILHDDCAFLSAFG-DVSKPERYSG---DN--IIYKPPGHSAPDMVY-LGAMTNFDVTYNWIQDKCVPLVREI  224 (382)
T ss_dssp             HHHHHHHHHHTTTCEEEEEES-CC-----------CE--EEEECSSSSSCCEEC-CSCTTCHHHHHHHHHHHHSCSSEEC
T ss_pred             HHHHHHHHHhhccceEEEEeh-hhHHhhCCCC---Cc--eEECCCCCCCcCccc-CCCCCCHHHHHHHHHhcccCceEec
Confidence            9999998 7889999999887 6788888864   46  556654  2456788 8998 89999999999999999999


Q ss_pred             CCCchhhhccCCCcceEEEEEeC--cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEe
Q 013976          157 TRENAPSVFESPIKNQLLLFAVS--NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTG  234 (432)
Q Consensus       157 ~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~  234 (432)
                      +.+++..++..+.+.+++|+.++  ..++.+...+.++|.++++++.|+++|+..   +..+++.||++..+.|++++.+
T Consensus       225 t~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~id~~~---~~~~~~~~gl~~~~~P~i~i~~  301 (382)
T 2r2j_A          225 TFENGEELTEEGLPFLILFHMKEDTESLEIFQNEVARQLISEKGTINFLHADCDK---FRHPLLHIQKTPADCPVIAIDS  301 (382)
T ss_dssp             CHHHHHHHHTTCCCEEEEEECTTCCHHHHHHHHHHHHHTGGGTTTSEEEEEETTT---THHHHHHTTCCGGGCSEEEEEC
T ss_pred             ChhhHHHHhcCCCcEEEEEecCCchHHHHHHHHHHHHHHHHhCCeeEEEEEchHH---hHHHHHHcCCCccCCCEEEEEc
Confidence            99999999888877777777665  345667778888888999999999999997   5578999999977789999986


Q ss_pred             CCCCceecCC---CCCCHHHHHHHHHHHhcCCcCccccCCCCCCCC------CCceEEEecccchhhhhcCCCcEEE
Q 013976          235 NDDAKKHILD---GELTLDKIKTFGEDFLEGKLKPFFKSDPIPETN------DGDVKIVVGNNFDEIVLDESKDVLL  302 (432)
Q Consensus       235 ~~~~~~y~~~---~~~~~~~i~~fi~~~~~g~l~~~~~se~~p~~~------~~~v~~l~~~~~~~~~~~~~~~~lv  302 (432)
                      ...  .|.|.   +.++.++|.+|++++++|+++|+++|+++|++.      +..+.....++|+++.-.+.+..|+
T Consensus       302 ~~~--~y~~~~~~~~~~~~~i~~F~~d~~~Gkl~p~~kse~~P~~~~~~~~~~~~~~~~~~s~f~~l~~~~~~~~~~  376 (382)
T 2r2j_A          302 FRH--MYVFGDFKDVLIPGKLKQFVFDLHSGKLHREFHHGPDPTDTAPGEQAQDVASSPPESSFQKLAPSEYRYTLL  376 (382)
T ss_dssp             SSC--EEECCCSGGGGSTTHHHHHHHHHHHTTTSSCC-------------------CCCCCCSGGGGSCCTTTCEEC
T ss_pred             chh--cCCCCccccccCHHHHHHHHHHHHCCCccccccCCCCCCCCCcccccccCCCCCCcccccccCCCccceecc
Confidence            533  35443   445789999999999999999999999999876      2223456778898865333455554

>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A

Probab=99.97  E-value=6.4e-29  Score=220.37  Aligned_cols=211  Identities=20%  Similarity=0.345  Sum_probs=187.9

Q ss_pred             CceeeCCHHHHHHHhhcCCeEEEEEecCCCcchHHHHHHHhccCCCceEEEeCcHHHHhHcCCCCCCCCCeEEEEecCCC
Q 013976           47 GIYNITTLDEAERVLTSETKVVLGYLNSLVGSESEVLADASRLEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETE  126 (432)
Q Consensus        47 ~~~~i~~~~~l~~~~~~~~~~vv~f~~~~~~~~~~~f~~~a~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~i~l~~~~~~  126 (432)
                      .+.+|++.++++++++.+++++||||.+.+.+++..|.++|+...++.|+++.++++|+++++..    |+|++||..++
T Consensus        10 ~~~~l~s~~~~~~~l~~~~v~vVgff~~~~~~~~~~f~~~A~~l~~~~F~~t~~~~v~~~~~v~~----p~i~lfk~~~~   85 (227)
T 4f9z_D           10 EPTWLTDVPAAMEFIAATEVAVIGFFQDLEIPAVPILHSMVQKFPGVSFGISTDSEVLTHYNITG----NTICLFRLVDN   85 (227)
T ss_dssp             CCEECCSHHHHHHHHHTSSEEEEEECSCSCSTHHHHHHHHTTTCTTSEEEEECCHHHHHHTTCCS----SEEEEEETTTT
T ss_pred             CCeeeCCHHHHHHHHhcCCeEEEEEecCCCchhHHHHHHHHHhCCCceEEEECCHHHHHHcCCCC----CeEEEEEecCc
Confidence            46799999999999999999999999999999999999999443699999999999999999975    99999998777


Q ss_pred             ceecccC----CCCCHHHHHHHHHhcCCCceeecCCCchhhhccCCCcceEEEEEe-C-cchhhhHHHHHHHHHhccCce
Q 013976          127 KISYFAD----GKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAV-S-NDSEKLLPVFEEAAKSFKGKL  200 (432)
Q Consensus       127 ~~~~y~~----g~~~~~~l~~fi~~~~~p~v~~l~~~~~~~~~~~~~~~~i~~~~~-~-~~~~~~~~~~~~~a~~~~~~i  200 (432)
                      ....| .    |+++.++|.+||..++.|+|.+++.+++..++..+.+.++++|.. + ++|..+++.|+++|+++++++
T Consensus        86 ~~~~~-~~~~~g~~~~~~l~~fi~~~~~plv~e~t~~n~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~~k~~i  164 (227)
T 4f9z_D           86 EQLNL-EDEDIESIDATKLSRFIEINSLHMVTEYNPVTVIGLFNSVIQIHLLLIMNKASPEYEENMHRYQKAAKLFQGKI  164 (227)
T ss_dssp             EEEEE-CHHHHHTCCHHHHHHHHHHHCCCSEEECCHHHHHHHHHSSCCEEEEEEECTTSTTHHHHHHHHHHHHHHTTTTC
T ss_pred             ccccc-cccccCCCCHHHHHHHHHHhCCCceeecCcccHHHHhccCCceEEEEEEcCCcchHHHHHHHHHHHHHHhhCCE
Confidence            77788 6    479999999999999999999999999999998887877776654 5 789999999999999999999


Q ss_pred             EEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCceecCC-CCCCHHHHHHHHHHHhcCC
Q 013976          201 IFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILD-GELTLDKIKTFGEDFLEGK  263 (432)
Q Consensus       201 ~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~-~~~~~~~i~~fi~~~~~g~  263 (432)
                      .|+++|++... +.++++.||++....|++++++..++.+|.+. +.++.++|.+|++++++|+
T Consensus       165 ~F~~vd~~~~~-~~~~l~~fgl~~~~~P~~~i~~~~~~~ky~~~~~~~t~~~i~~Fv~~~~~Gk  227 (227)
T 4f9z_D          165 LFILVDSGMKE-NGKVISFFKLKESQLPALAIYQTLDDEWDTLPTAEVSVEHVQNFCDGFLSGK  227 (227)
T ss_dssp             EEEEEETTSGG-GHHHHHHTTCCGGGCSEEEEEESSSCCEEEETTCCCCHHHHHHHHHHHHTTC
T ss_pred             EEEEeCCccHh-HHHHHHHcCCCcccCCEEEEEECCCCccccCCcCCCCHHHHHHHHHHHhCCC
Confidence            99999998644 55788999998667799999987766778774 7899999999999999986

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=99.96  E-value=3.8e-28  Score=217.93  Aligned_cols=218  Identities=22%  Similarity=0.409  Sum_probs=190.0

Q ss_pred             CceeecCCCchhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCc---eEEEEEecCCcccccchhhhhCCCCCC
Q 013976          151 PLVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK---LIFVYVQMDNEDVGKPVSEYFGITGEA  226 (432)
Q Consensus       151 p~v~~l~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~---i~f~~vd~~~~~~~~~l~~~~~i~~~~  226 (432)
                      ..+..++.+++......++++++.||++| ++|+.+.+.|.++++++.+.   +.|+.+|++.   ++.+++.||+++. 
T Consensus        15 ~~v~~l~~~~~~~~~~~~~~v~v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~---~~~l~~~~~v~~~-   90 (241)
T 3idv_A           15 NGVLVLNDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATS---ASVLASRFDVSGY-   90 (241)
T ss_dssp             TTEEEECTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETTT---CHHHHHHTTCCSS-
T ss_pred             CCcEEecccCHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhhcCCceEEEEEeccC---CHHHHHhcCCCcC-
Confidence            35888999999999888888899999999 99999999999999999876   9999999998   5689999999988 


Q ss_pred             CcEEEEEeCCCCceecCCCCCCHHHHHHHHHHHhcCCcCccccCCCCCCCCCCceEEEecccchhhhhcCCCcEEEEEeC
Q 013976          227 PKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYA  306 (432)
Q Consensus       227 ~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g~l~~~~~se~~p~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~  306 (432)
                       |+++++.++  ....+.|.++.+.|.+|+.+.+.....+          ....+..++..+|++.+ ..+++++|.||+
T Consensus        91 -Pt~~~~~~g--~~~~~~g~~~~~~l~~~i~~~~~~~~~~----------~~~~~~~~~~~~~~~~~-~~~~~~~v~f~a  156 (241)
T 3idv_A           91 -PTIKILKKG--QAVDYEGSRTQEEIVAKVREVSQPDWTP----------PPEVTLVLTKENFDEVV-NDADIILVEFYA  156 (241)
T ss_dssp             -SEEEEEETT--EEEECCSCSCHHHHHHHHHHHHSTTCCC----------CCCSSEECCTTTHHHHH-HHCSEEEEEEEC
T ss_pred             -CEEEEEcCC--CcccccCcccHHHHHHHHhhccCccccc----------ccccceeccHHHHHHhh-ccCCeEEEEEEC
Confidence             999998654  4456889999999999999987643221          23457889999999977 556899999999


Q ss_pred             CCChhhhhhHHHHHHHHHHhcCC-CCEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCcccCceeccCCCCHHHHHHHH
Q 013976          307 PWCGHCQAFEPTYNKLAKHLRGV-DSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFL  383 (432)
Q Consensus       307 ~~c~~c~~~~~~~~~la~~~~~~-~~~~~~~id~~~~~~--~~~~i~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi  383 (432)
                      +||++|+.+.|.|.+++..+.+. +.+.|+.+|++.+..  .+++|.++|++++|++|+.+    .|.|.++.+.|.+||
T Consensus       157 ~wC~~C~~~~p~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~~----~~~g~~~~~~l~~~l  232 (241)
T 3idv_A          157 PWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETDLAKRFDVSGYPTLKIFRKGRPY----DYNGPREKYGIVDYM  232 (241)
T ss_dssp             TTCTGGGGTHHHHHHHHHHHHTSSSCCCEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEE----ECCSCCSHHHHHHHH
T ss_pred             CCCHHHHHhHHHHHHHHHHHhccCCcEEEEEEECCCCHHHHHHcCCcccCEEEEEECCeEE----EecCCCCHHHHHHHH
Confidence            99999999999999999999763 469999999998876  68999999999999988654    799999999999999


Q ss_pred             HhcCCCC
Q 013976          384 KKNASIP  390 (432)
Q Consensus       384 ~~~~~~~  390 (432)
                      .+++...
T Consensus       233 ~~~~~~~  239 (241)
T 3idv_A          233 IEQSGAA  239 (241)
T ss_dssp             HHHTTCT
T ss_pred             HhhhCCC
Confidence            9998754

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=99.92  E-value=7.9e-23  Score=193.38  Aligned_cols=309  Identities=16%  Similarity=0.162  Sum_probs=239.7

Q ss_pred             CceeeCCHHHHHHHhhcCCeEEEEEecCCCcc--hHHH-------HHHHh-ccCC-CceEEEeC---cHHHHhHcCCCCC
Q 013976           47 GIYNITTLDEAERVLTSETKVVLGYLNSLVGS--ESEV-------LADAS-RLED-DVNFYQTT---NPDVAKIFHLDSK  112 (432)
Q Consensus        47 ~~~~i~~~~~l~~~~~~~~~~vv~f~~~~~~~--~~~~-------f~~~a-~~~~-~~~F~~~~---~~~~~~~~~~~~~  112 (432)
                      .+..+ +.+++++.+..+++++|.|+.+.|+.  +...       |.++| .+.+ .+.|+.++   +.++|+++++.. 
T Consensus        12 ~v~~l-~~~~f~~~i~~~~~~lV~F~a~wC~c~~~~p~~~~~~~~~~~~a~~~~~~~v~~~~Vd~~~~~~l~~~~~v~~-   89 (350)
T 1sji_A           12 RVVSL-TEKNFKQVLKKYDVLCLYYHESVSSDKVAQKQFQLKEIVLELVAQVLEHKDIGFVMVDAKKEAKLAKKLGFDE-   89 (350)
T ss_dssp             CCEEE-CHHHHHHHHTTCSEEEEEEECCSCSSSTTSHHHHHHHHHHHHHHHHGGGSSEEEEEEETTTTHHHHHHHTCCS-
T ss_pred             ccEEC-CHHHHHHHHhhCCeEEEEEECCCCcchhhCchhhhhhHHHHHHHHHHhhcCcEEEEEeCCCCHHHHHhcCCCc-
Confidence            36677 57889999988999999999998852  2333       77777 4444 58888753   678999999986 


Q ss_pred             CCCCeEEEEecCCCceecccCCCCCHHHHHHHHHhcCCCceeecC-CCchhhhcc-CCCcceEEEEEeCcchhhhHHHHH
Q 013976          113 VNRPALVMVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFT-RENAPSVFE-SPIKNQLLLFAVSNDSEKLLPVFE  190 (432)
Q Consensus       113 ~~~p~i~l~~~~~~~~~~y~~g~~~~~~l~~fi~~~~~p~v~~l~-~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~  190 (432)
                        +|++++|+.+  ....| .|..+.+.|..||.....|.+.+++ .+++..+.. .....++.||.++  |....+.|.
T Consensus        90 --~Pt~~~~~~g--~~~~~-~G~~~~~~l~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~vv~ff~~~--~~~~~~~~~  162 (350)
T 1sji_A           90 --EGSLYVLKGD--RTIEF-DGEFAADVLVEFLLDLIEDPVEIINSKLEVQAFERIEDQIKLIGFFKSE--ESEYYKAFE  162 (350)
T ss_dssp             --TTEEEEEETT--EEEEE-CSCCCHHHHHHHHHTTSSCSEEECCSHHHHHHHHHCCSSCEEEEECSCT--TSHHHHHHH
T ss_pred             --cceEEEEECC--cEEEe-cCCCCHHHHHHHHHHhcCCcceeccchHHHHHHhccCCCcEEEEEECCC--CcHHHHHHH
Confidence              7999999864  36688 9999999999999999999999996 466777765 4545556666553  556678899


Q ss_pred             HHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCceecCCCC-CCHHHHHHHHHHHhcCCcCcccc
Q 013976          191 EAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGE-LTLDKIKTFGEDFLEGKLKPFFK  269 (432)
Q Consensus       191 ~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~-~~~~~i~~fi~~~~~g~l~~~~~  269 (432)
                      ++|..+++.+.|+.+.      .+.+++.+|++ .  |+++++.........|.|. ++.++|.+|+....-        
T Consensus       163 ~~A~~~~~~~~f~~~~------~~~~~~~~~v~-~--p~i~~~~~~~~~~~~y~g~~~~~~~l~~fi~~~~~--------  225 (350)
T 1sji_A          163 EAAEHFQPYIKFFATF------DKGVAKKLSLK-M--NEVDFYEPFMDEPIAIPDKPYTEEELVEFVKEHQR--------  225 (350)
T ss_dssp             HHHHHTTTTSEEEEEC------CHHHHHHHTCC-T--TCEEEECTTCSSCEECSSSSCCHHHHHHHHHHHCC--------
T ss_pred             HHHHhhccCcEEEEEC------CHHHHHHcCCC-C--CcEEEEeCCCCCceecCCCCCCHHHHHHHHHHcCc--------
Confidence            9999999999999875      34689999998 5  9998887654456678887 899999999998542        


Q ss_pred             CCCCCCCCCCceEEEecccchhhhhcCC-CcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc----
Q 013976          270 SDPIPETNDGDVKIVVGNNFDEIVLDES-KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH----  344 (432)
Q Consensus       270 se~~p~~~~~~v~~l~~~~~~~~~~~~~-~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~----  344 (432)
                               +.+..++..++.+++.... +..++.|+.++|.+|..+.+.|.++|+.+++..++.|+.+|++.+..    
T Consensus       226 ---------p~v~elt~~~~~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~~~~vA~~~~~~~~~~f~~id~~~~~~~~~~  296 (350)
T 1sji_A          226 ---------PTLRRLRPEDMFETWEDDLNGIHIVAFAERSDPDGYEFLEILKQVARDNTDNPDLSIVWIDPDDFPLLVAY  296 (350)
T ss_dssp             ---------CSEEECCTTTHHHHHHSCSSSEEEEEECCTTSHHHHHHHHHHHHHHHHGGGCSSCCEEEECGGGCHHHHHH
T ss_pred             ---------cchhhcChhhHHHHhcCCCCCcEEEEEEcCCCccHHHHHHHHHHHHHHhCCCCceEEEEECchhhHHHHHH
Confidence                     3488899999998763332 55566799999999999999999999999853479999999987764    


Q ss_pred             --ccCCCC-CCceEEEEeCCCcccCcee-c---cCCCCHHHHHHHHHhcCCCCC
Q 013976          345 --HRAKSD-GFPTILFFPAGNKSFDPIN-V---DVDRTVVALYKFLKKNASIPF  391 (432)
Q Consensus       345 --~~~~i~-~~P~i~~~~~g~~~~~~~~-y---~g~~~~~~l~~fi~~~~~~~~  391 (432)
                        ..+++. .+|+++++...+.. +... +   .|..+.+.|.+||++..+.+.
T Consensus       297 ~~~~~gi~~~~P~~~i~~~~~~~-~~~~~~~~~~~~~~~~~i~~F~~d~~~Gkl  349 (350)
T 1sji_A          297 WEKTFKIDLFKPQIGVVNVTDAD-SVWMEIPDDDDLPTAEELEDWIEDVLSGKI  349 (350)
T ss_dssp             HHHHCCSCTTSCEEEEEESSSSC-EEESCSSCCSCCCCHHHHHHHHHHHHTSCC
T ss_pred             HHhhcCCCccCCcEEEEeccccc-ccccCCCcccccCCHHHHHHHHHHHhcCcc
Confidence              247777 58999999763321 1111 2   358899999999999876543

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=99.91  E-value=2.1e-24  Score=191.59  Aligned_cols=194  Identities=14%  Similarity=0.171  Sum_probs=158.0

Q ss_pred             ceEEEEEe-C-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCceecCCCCCC
Q 013976          171 NQLLLFAV-S-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELT  248 (432)
Q Consensus       171 ~~i~~~~~-~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~~~  248 (432)
                      .+++|+++ | ++|+.+.+.++++|+. .+++.|+.+|+++.+ ++.+++.||+.+.  |+++++.++......+.|..+
T Consensus        25 ~lv~f~~~~~C~~C~~~~~~~~~la~~-~~~v~~~~vd~~~~~-~~~~~~~~~v~~~--Pt~~~~~~g~~~~~~~~G~~~  100 (226)
T 1a8l_A           25 KLIVFVRKDHCQYCDQLKQLVQELSEL-TDKLSYEIVDFDTPE-GKELAKRYRIDRA--PATTITQDGKDFGVRYFGLPA  100 (226)
T ss_dssp             EEEEEECSSSCTTHHHHHHHHHHHHTT-CTTEEEEEEETTSHH-HHHHHHHTTCCSS--SEEEEEETTBCCSEEEESCCC
T ss_pred             EEEEEecCCCCchhHHHHHHHHHHHhh-CCceEEEEEeCCCcc-cHHHHHHcCCCcC--ceEEEEcCCceeeEEEeccCc
Confidence            35678888 9 9999999999999965 567999999998733 3589999999987  999998665433456778888


Q ss_pred             HHHHHHHHHHHhcCCcCccccCCCCCCCCCCceEEEecccchhhhhcCCCcE-EEEEeCCCChhhhhhHHHHHHHHHHhc
Q 013976          249 LDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDV-LLEIYAPWCGHCQAFEPTYNKLAKHLR  327 (432)
Q Consensus       249 ~~~i~~fi~~~~~g~l~~~~~se~~p~~~~~~v~~l~~~~~~~~~~~~~~~~-lv~f~~~~c~~c~~~~~~~~~la~~~~  327 (432)
                      .+.+.+|+..++....               .+..++..+|+... ..++++ +|.||++||++|+.+.|.|.+++..+.
T Consensus       101 ~~~l~~~l~~~l~~~~---------------~~~~l~~~~~~~~~-~~~~~~~~v~F~a~wC~~C~~~~p~~~~l~~~~~  164 (226)
T 1a8l_A          101 GHEFAAFLEDIVDVSR---------------EETNLMDETKQAIR-NIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENT  164 (226)
T ss_dssp             TTHHHHHHHHHHHHHH---------------TCCCCCHHHHHHHT-TCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcC---------------CCCCCCHHHHHHHH-hcCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcc
Confidence            8999999999874221               12335667777754 445666 999999999999999999999999997


Q ss_pred             C--CCCEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCcccCceeccCCCCHHHHHHHHHhcC
Q 013976          328 G--VDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA  387 (432)
Q Consensus       328 ~--~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  387 (432)
                      +  ..++.++.+|++.+..  .+++|.++|++++|++|+...   .+.|..+.+.|.+||++++
T Consensus       165 ~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~~~---~~~G~~~~~~l~~~l~~~l  225 (226)
T 1a8l_A          165 KAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQVNGEDRV---EFEGAYPEKMFLEKLLSAL  225 (226)
T ss_dssp             HTTCCCEEEEEEEGGGCHHHHHHTTCCSSCEEEEEETTEEEE---EEESCCCHHHHHHHHHHHH
T ss_pred             cccCCcEEEEEEEcccCHHHHHhCCCcccCeEEEEeCCceeE---EEcCCCCHHHHHHHHHHhh
Confidence            1  1269999999998776  689999999999999887653   7999999999999998864

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=99.91  E-value=2e-22  Score=191.36  Aligned_cols=315  Identities=14%  Similarity=0.138  Sum_probs=244.8

Q ss_pred             CceeeCCHHHHHHHhhcCCeEEEEEecCCCcc--hHH-------HHHHHh-ccCC-CceEEEeC---cHHHHhHcCCCCC
Q 013976           47 GIYNITTLDEAERVLTSETKVVLGYLNSLVGS--ESE-------VLADAS-RLED-DVNFYQTT---NPDVAKIFHLDSK  112 (432)
Q Consensus        47 ~~~~i~~~~~l~~~~~~~~~~vv~f~~~~~~~--~~~-------~f~~~a-~~~~-~~~F~~~~---~~~~~~~~~~~~~  112 (432)
                      .+..+ +.+.++++++.++.++|-|+.+.|++  ...       .|..+| .+.+ .+.|+.+.   ++++|+++++.. 
T Consensus        14 ~v~~l-t~~~f~~~i~~~~~vlV~FyApWC~~~~~~~~l~~~~p~~e~~a~~~~~~~v~~~~Vd~~~~~~l~~~~~V~~-   91 (367)
T 3us3_A           14 RVINV-NAKNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKKLGLTE-   91 (367)
T ss_dssp             CCEEC-CTTTHHHHHHHCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEETTTTHHHHHHHTCCS-
T ss_pred             ccEEC-CHHHHHHHHhhCCeEEEEEECCCchhHHHhhhhccccHHHHHHHHHhhcCCceEEEEeCcccHHHHHHcCCCc-
Confidence            46666 46889999999999999999999976  122       466777 4444 58888754   678999999986 


Q ss_pred             CCCCeEEEEecCCCceecccCCCCCHHHHHHHHHhcCCCceeecCC-Cchhhhcc-CCCcceEEEEEeCcchhhhHHHHH
Q 013976          113 VNRPALVMVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTR-ENAPSVFE-SPIKNQLLLFAVSNDSEKLLPVFE  190 (432)
Q Consensus       113 ~~~p~i~l~~~~~~~~~~y~~g~~~~~~l~~fi~~~~~p~v~~l~~-~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~  190 (432)
                        +|++++|+.+  ....| .|..+.+.|..||.....|.+..++. +++..+.. ....++|.||.+  .|....+.|.
T Consensus        92 --~PTl~~f~~G--~~~~y-~G~~~~~~i~~~i~~~~~~~v~~i~~~~~~~~~~~~~~~~~vv~ff~~--~~~~~~~~f~  164 (367)
T 3us3_A           92 --EDSIYVFKED--EVIEY-DGEFSADTLVEFLLDVLEDPVELIEGERELQAFENIEDEIKLIGYFKN--KDSEHYKAFK  164 (367)
T ss_dssp             --TTEEEEEETT--EEEEC-CSCCSHHHHHHHHHHHHSCSEEECCSHHHHHHHHHCCSSCEEEEECSC--TTCHHHHHHH
T ss_pred             --CceEEEEECC--cEEEe-CCCCCHHHHHHHHHHhcCCCcEEcCCHHHHHHHhccCCCcEEEEEECC--CCchHHHHHH
Confidence              7999999953  45688 99999999999999999999999964 67777776 444556666655  3556778899


Q ss_pred             HHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCceecCCCC-CCHHHHHHHHHHHhcCCcCcccc
Q 013976          191 EAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGE-LTLDKIKTFGEDFLEGKLKPFFK  269 (432)
Q Consensus       191 ~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~-~~~~~i~~fi~~~~~g~l~~~~~  269 (432)
                      ++|..+++.+.|+.+..      ..+++.+|++.   |+|+++......+..|.|. ++.+.|.+||....-        
T Consensus       165 ~~A~~~~~~~~F~~~~~------~~~~~~~~v~~---p~i~lf~~~~~~~~~y~g~~~~~~~l~~fi~~~~~--------  227 (367)
T 3us3_A          165 EAAEEFHPYIPFFATFD------SKVAKKLTLKL---NEIDFYEAFMEEPVTIPDKPNSEEEIVNFVEEHRR--------  227 (367)
T ss_dssp             HHHHHHTTTSCEEEECC------HHHHHHHTCCT---TCEEEECTTCSSCEECSSSSCCHHHHHHHHHHTCS--------
T ss_pred             HHHHhhcCCcEEEEECC------HHHHHHcCCCC---CeEEEEcCCCCCCeecCCCCCCHHHHHHHHHHcCc--------
Confidence            99999999999998753      36789999973   8898887654556678884 999999999998542        


Q ss_pred             CCCCCCCCCCceEEEecccchhhhhcC-CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCcccc---
Q 013976          270 SDPIPETNDGDVKIVVGNNFDEIVLDE-SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHH---  345 (432)
Q Consensus       270 se~~p~~~~~~v~~l~~~~~~~~~~~~-~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~~---  345 (432)
                               +.|..++..++.+.+... .++.++.|+.++|..|..+...+.++|+.+++.+++.|+.+|+......   
T Consensus       228 ---------p~v~elt~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~vA~~~~~~~ki~F~~id~~~~~~~l~~  298 (367)
T 3us3_A          228 ---------STLRKLKPESMYETWEDDMDGIHIVAFAEEADPDGYEFLEILKSVAQDNTDNPDLSIIWIDPDDFPLLVPY  298 (367)
T ss_dssp             ---------CSEEECCGGGHHHHHHSCBTTEEEEEECCTTSHHHHHHHHHHHHHHHHTTTCTTCCEEEECGGGCTTTHHH
T ss_pred             ---------cceeecChhhHHHHHhhccCCcEEEEEEcCCChhHHHHHHHHHHHHHHcCCCCceEEEEECCccchhHHHH
Confidence                     348889999988766443 4577888999999999999999999999999854699999999987642   


Q ss_pred             ---cCCCC-CCceEEEEeCCCcccCceecc---CCCCHHHHHHHHHhcCCCCCcccCC
Q 013976          346 ---RAKSD-GFPTILFFPAGNKSFDPINVD---VDRTVVALYKFLKKNASIPFKIQKP  396 (432)
Q Consensus       346 ---~~~i~-~~P~i~~~~~g~~~~~~~~y~---g~~~~~~l~~fi~~~~~~~~~~~~~  396 (432)
                         .+++. .+|+++++.......+...+.   +..+.++|.+|+++....+.+....
T Consensus       299 ~~~~fgl~~~~P~~~i~~~~~~~~~~y~~~~~~~~~t~~~i~~F~~~~~~Gkl~p~~~  356 (367)
T 3us3_A          299 WEKTFDIDLSAPQIGVVNVTDADSVWMEMDDEEDLPSAEELEDWLEDVLEGEINTEDD  356 (367)
T ss_dssp             HHHHHTCCTTSCEEEEEETTTCCEEECCCCTTSCCCCHHHHHHHHHHHHHTSSCC---
T ss_pred             HHHhcCCCCCCCeEEEEecccccceeecCCcccccCCHHHHHHHHHHHHcCCcCcccc
Confidence               26776 899999997543310111344   3689999999999999888776533

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=99.90  E-value=1.5e-23  Score=186.30  Aligned_cols=191  Identities=13%  Similarity=0.096  Sum_probs=157.7

Q ss_pred             CCCcceEEEE-----EeC-cchhhhHHHHHHHHHhc--cCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCC
Q 013976          167 SPIKNQLLLF-----AVS-NDSEKLLPVFEEAAKSF--KGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDA  238 (432)
Q Consensus       167 ~~~~~~i~~~-----~~~-~~~~~~~~~~~~~a~~~--~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~  238 (432)
                      ...++.+++|     ++| ++|+.+.+.|.++|..+  .+++.|+.+||+.   ++.+|+.|||+++  |+++++.. +.
T Consensus        19 ~~~~v~v~~~~~~~~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~vd~~~---~~~l~~~~~v~~~--Ptl~~~~~-~~   92 (229)
T 2ywm_A           19 FKEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFT---HKEETEKYGVDRV--PTIVIEGD-KD   92 (229)
T ss_dssp             CCSCEEEEEECCCTTCGGGGHHHHHHHHHHHHHHHHHCTTTEEEEEECTTT---CHHHHHHTTCCBS--SEEEEESS-SC
T ss_pred             ccCCeEEEEEccCCCCcccHHHHHHHHHHHHHHhccCCCCceEEEEecCcc---cHHHHHHcCCCcC--cEEEEECC-Cc
Confidence            3446677777     677 89999999999999998  6789999999998   6799999999988  99999963 33


Q ss_pred             ceecCCCCCCHHHHHHHHHHHhcCCcCccccCCCCCCCCCCceEEEecccchhhhhcCCCcE-EEEEeCCCChhhhhhHH
Q 013976          239 KKHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDV-LLEIYAPWCGHCQAFEP  317 (432)
Q Consensus       239 ~~y~~~~~~~~~~i~~fi~~~~~g~l~~~~~se~~p~~~~~~v~~l~~~~~~~~~~~~~~~~-lv~f~~~~c~~c~~~~~  317 (432)
                      ....|.|..+.+.+..|+...+...               +.+..++..+|+..+ ..++++ +|.||++||++|+.+.|
T Consensus        93 ~~~~~~G~~~~~~l~~~~~~~~~~~---------------~~~~~l~~~~~~~~~-~~~~~~~~v~F~a~wC~~C~~~~~  156 (229)
T 2ywm_A           93 YGIRYIGLPAGLEFTTLINGIFHVS---------------QRKPQLSEKTLELLQ-VVDIPIEIWVFVTTSCGYCPSAAV  156 (229)
T ss_dssp             CCEEEESCCCTTHHHHHHHHHHHHH---------------TTCCSCCHHHHHHHT-TCCSCEEEEEEECTTCTTHHHHHH
T ss_pred             ccceecCCccHHHHHHHHHHHHhcc---------------CCccCCCHHHHHHHH-hcCCCeEEEEEECCCCcchHHHHH
Confidence            4566789899999999999876411               113446778888865 444555 88899999999999999


Q ss_pred             HHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCcccCceeccCCCCHHHHHHHHHhcCC
Q 013976          318 TYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNAS  388 (432)
Q Consensus       318 ~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  388 (432)
                      .|.+++..+.   ++.++.+|++.+..  .+++|.++|++++  +|+ +   ..|.|..+.+.|.+||.+.++
T Consensus       157 ~~~~~~~~~~---~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~--~G~-~---~~~~G~~~~~~l~~~l~~~~~  220 (229)
T 2ywm_A          157 MAWDFALAND---YITSKVIDASENQDLAEQFQVVGVPKIVI--NKG-V---AEFVGAQPENAFLGYIMAVYE  220 (229)
T ss_dssp             HHHHHHHHCT---TEEEEEEEGGGCHHHHHHTTCCSSSEEEE--GGG-T---EEEESCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCC---CeEEEEEECCCCHHHHHHcCCcccCEEEE--CCE-E---EEeeCCCCHHHHHHHHHHHhh
Confidence            9999999983   69999999998776  6899999999999  665 3   269999999999999998764

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=99.88  E-value=1.4e-21  Score=174.60  Aligned_cols=194  Identities=12%  Similarity=0.078  Sum_probs=151.3

Q ss_pred             CcceEEEEEeC---cchhhhHHHHHHHHHh---ccCc--eEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCce
Q 013976          169 IKNQLLLFAVS---NDSEKLLPVFEEAAKS---FKGK--LIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKK  240 (432)
Q Consensus       169 ~~~~i~~~~~~---~~~~~~~~~~~~~a~~---~~~~--i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~  240 (432)
                      .++.+.||++|   +.|+.+.+.+.++|+.   ++++  +.|+.+|+++   ++.+++.|||+..  |+++++ ++   .
T Consensus        26 ~pv~v~~~~~~~~c~~c~~~~~~l~ela~~~~~~~~~~~v~~~~vd~d~---~~~~~~~~gv~~~--Pt~~i~-~g---~   96 (243)
T 2hls_A           26 NPVEVHVFLSKSGCETCEDTLRLMKLFEEESPTRNGGKLLKLNVYYRES---DSDKFSEFKVERV--PTVAFL-GG---E   96 (243)
T ss_dssp             SCEEEEEEECSSSCTTHHHHHHHHHHHHHHSCEETTEESEEEEEEETTT---THHHHHHTTCCSS--SEEEET-TT---T
T ss_pred             CCEEEEEEeCCCCCCchHHHHHHHHHHHHhccCCCCCceeEEEEecCCc---CHHHHHhcCCCcC--CEEEEE-CC---c
Confidence            47788899988   6799999999999998   5555  9999999987   5689999999977  999988 33   3


Q ss_pred             ecCCCCCCHHHHHHHHHHHhcCCcCccccCCCCCCCCCCceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHH
Q 013976          241 HILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYN  320 (432)
Q Consensus       241 y~~~~~~~~~~i~~fi~~~~~g~l~~~~~se~~p~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~  320 (432)
                      ..|.|..+...+..|+..++.+...+.               .++..+++....-.++.+++.||+|||++|+.+.|.|+
T Consensus        97 ~~~~G~~~~~~l~~fv~~~l~~~~~~~---------------~l~~~~~~~~~~~~~~~~vv~F~a~wC~~C~~~~p~l~  161 (243)
T 2hls_A           97 VRWTGIPAGEEIRALVEVIMRLSEDES---------------GLEDATKEALKSLKGRVHIETIITPSCPYCPYAVLLAH  161 (243)
T ss_dssp             EEEESCCCTTHHHHHHHHHHHHHTTCC---------------CCCHHHHHHHHHCCSCEEEEEEECSSCSSHHHHHHHHH
T ss_pred             eeEcCCCcHHHHHHHHHHHHhccCCCC---------------CCCHHHHHHHHHcCCCcEEEEEECCCCCCcHHHHHHHH
Confidence            345676777899999998875322211               12223344322223456789999999999999999999


Q ss_pred             HHHHHhc--CCCCEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCcccCceeccCCCCHHHHHHHHHhcCCCCCcc
Q 013976          321 KLAKHLR--GVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPFKI  393 (432)
Q Consensus       321 ~la~~~~--~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~~~~  393 (432)
                      +++..+.  +.+++.++.+|++.+..  .+++|.++||+++  +|..     .|.|.++.+.|.+||.+.+......
T Consensus       162 ~la~~~~~~~~~~v~~~~vd~~~~~~~~~~~~V~~vPt~~i--~G~~-----~~~G~~~~~~l~~~l~~~~~~~~~~  231 (243)
T 2hls_A          162 MFAYEAWKQGNPVILSEAVEAYENPDIADKYGVMSVPSIAI--NGYL-----VFVGVPYEEDFLDYVKSAAEGRLTV  231 (243)
T ss_dssp             HHHHHHHHTTCCCEEEEEEETTTCHHHHHHTTCCSSSEEEE--TTEE-----EEESCCCHHHHHHHHHHHHTTCCCC
T ss_pred             HHHHHcccccCCcEEEEEEECccCHHHHHHcCCeeeCeEEE--CCEE-----EEeCCCCHHHHHHHHHHHhhccccc
Confidence            9999984  22379999999998876  6899999999988  5542     5999999999999999998754333

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=99.87  E-value=5.2e-20  Score=175.01  Aligned_cols=238  Identities=16%  Similarity=0.256  Sum_probs=187.3

Q ss_pred             Ccceeeecc--CcccccCCCcccCccCCCCCChhHHHHHHHHhhCCCceeeCCHHHHHHHhhc-CCeEEEEEecCCCcc-
Q 013976            3 WRTSTTFRA--SRRFTSSSTASIKLIMAAAPSKDAIVTWIKKKIGPGIYNITTLDEAERVLTS-ETKVVLGYLNSLVGS-   78 (432)
Q Consensus         3 ~Ptl~~f~~--g~~~~~~~~~~~~~~Y~G~~~~~~i~~~l~~~~~~~~~~i~~~~~l~~~~~~-~~~~vv~f~~~~~~~-   78 (432)
                      -|+|.+||.  +....          |.|..+.++|.+||+....|.+.+++. +.+..++.. .+.++|.|+...+.+ 
T Consensus        82 ~~~i~lfk~f~~~~~~----------~~g~~~~~~i~~fi~~~~~p~v~~~~~-~~~~~~~~~~~~~~~v~F~~~~~~~~  150 (361)
T 3uem_A           82 KDGVVLFKKFDEGRNN----------FEGEVTKENLLDFIKHNQLPLVIEFTE-QTAPKIFGGEIKTHILLFLPKSVSDY  150 (361)
T ss_dssp             SSEEEEEESSTTSEEE----------CCSCCCHHHHHHHHHHHSSCSEEECST-TTHHHHHSCSCCEEEEEECCSSSSSH
T ss_pred             CCeEEEEEecCCCccc----------cCCcCCHHHHHHHHHHcCCCcceecCc-ccHHHHhcCCCCcEEEEEEeCCchhH
Confidence            389999986  33333          999999999999999999999988864 556666654 456677777665543 


Q ss_pred             --hHHHHHHHh-ccCCCceEEEeC-----cHHHHhHcCCCCCCCCCeEEEEecCCCceecc--cCCCCCHHHHHHHHHhc
Q 013976           79 --ESEVLADAS-RLEDDVNFYQTT-----NPDVAKIFHLDSKVNRPALVMVKKETEKISYF--ADGKFDKSTIADFVFSN  148 (432)
Q Consensus        79 --~~~~f~~~a-~~~~~~~F~~~~-----~~~~~~~~~~~~~~~~p~i~l~~~~~~~~~~y--~~g~~~~~~l~~fi~~~  148 (432)
                        ....|.++| ++++.+.|+.+.     ...+|+.+|+.. ...|++++++..+ ....|  ..|.++.+.|..|+...
T Consensus       151 ~~~~~~~~~~A~~~~~~i~f~~vd~~~~~~~~~~~~fgi~~-~~~P~~~~~~~~~-~~~ky~~~~~~~~~~~l~~fi~~~  228 (361)
T 3uem_A          151 DGKLSNFKTAAESFKGKILFIFIDSDHTDNQRILEFFGLKK-EECPAVRLITLEE-EMTKYKPESEELTAERITEFCHRF  228 (361)
T ss_dssp             HHHHHHHHHHHGGGTTTCEEEEECTTSGGGHHHHHHTTCCT-TTCSEEEEEECC---CCEECCSSCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCceEEEEecCChHHHHHHHHHcCCCc-cCCccEEEEEcCC-cccccCCCccccCHHHHHHHHHHH
Confidence              456788888 677889999854     457899999973 2469999998743 33344  13789999999999874


Q ss_pred             CC------------------CceeecCCCchhhhc-cCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCc--eEEEEEe
Q 013976          149 KL------------------PLVTIFTRENAPSVF-ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK--LIFVYVQ  206 (432)
Q Consensus       149 ~~------------------p~v~~l~~~~~~~~~-~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~--i~f~~vd  206 (432)
                      ..                  ..+..++.+++..+. ..++.+++.||++| ++|+.+.+.|.++|..++++  +.|+.+|
T Consensus       229 l~g~~~~~~~s~~~p~~~~~~~v~~l~~~~f~~~~~~~~k~~lv~f~a~wC~~C~~~~p~~~~la~~~~~~~~v~~~~vd  308 (361)
T 3uem_A          229 LEGKIKPHLMSQELPEDWDKQPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMD  308 (361)
T ss_dssp             HTTCSCCCCBCCCCCTTTTTSSSEEECTTTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHTTTCSSEEEEEEE
T ss_pred             hcCCCcccccCCCCCcccccCCcEEeecCchhhhcccCCCcEEEEEecCcCHhHHHHHHHHHHHHHHhccCCcEEEEEEE
Confidence            21                  237788899998865 56778889999999 99999999999999999875  9999999


Q ss_pred             cCCcccccchhhhhCCCCCCCcEEEEEeCC-CCceecCCCCCCHHHHHHHHHHHh
Q 013976          207 MDNEDVGKPVSEYFGITGEAPKVLAYTGND-DAKKHILDGELTLDKIKTFGEDFL  260 (432)
Q Consensus       207 ~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~-~~~~y~~~~~~~~~~i~~fi~~~~  260 (432)
                      +....     ++.|++.++  |+++++..+ +.....+.|.++.+.|.+||.+..
T Consensus       309 ~~~~~-----~~~~~v~~~--Pt~~~~~~~~~~~~~~~~G~~~~~~l~~~l~~~~  356 (361)
T 3uem_A          309 STANE-----VEAVKVHSF--PTLKFFPASADRTVIDYNGERTLDGFKKFLESGG  356 (361)
T ss_dssp             TTTCB-----CSSCCCCSS--SEEEEECSSSSCCCEECCSCSSHHHHHHHHTTTS
T ss_pred             CCccc-----hhhcCCccc--CeEEEEECCCCcceeEecCCCCHHHHHHHHHhcC
Confidence            98742     688999998  999999655 345678899999999999998753

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=99.85  E-value=1.3e-19  Score=173.35  Aligned_cols=307  Identities=15%  Similarity=0.183  Sum_probs=214.3

Q ss_pred             ceeeCCHHHHHHHhhcCCeEEEEEecCCCcc---hHHHHHHHh-cc------CCCceEEEeC---cHHHHhHcCCCCCCC
Q 013976           48 IYNITTLDEAERVLTSETKVVLGYLNSLVGS---ESEVLADAS-RL------EDDVNFYQTT---NPDVAKIFHLDSKVN  114 (432)
Q Consensus        48 ~~~i~~~~~l~~~~~~~~~~vv~f~~~~~~~---~~~~f~~~a-~~------~~~~~F~~~~---~~~~~~~~~~~~~~~  114 (432)
                      +..|+ .++++.++..++.++|.|+.+.|++   +...|.++| .+      .+.+.|+.+.   +.++|+++++..   
T Consensus         7 v~~l~-~~~f~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~~~~~l~~~~~v~~---   82 (382)
T 2r2j_A            7 ITSLD-TENIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISK---   82 (382)
T ss_dssp             -CBCC-TTTHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEETTTCHHHHHHTTCCE---
T ss_pred             eEECC-HHHHHHHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEECCccHHHHHhcCCCc---
Confidence            55664 5778888888899999999999865   556677777 44      3458888854   678999999986   


Q ss_pred             CCeEEEEecCCCcee-cccCCCCCHHHHHHHHHhcCCCceeecCC-CchhhhccCCCcceEEEEEeCcchhhhHHHHHHH
Q 013976          115 RPALVMVKKETEKIS-YFADGKFDKSTIADFVFSNKLPLVTIFTR-ENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEA  192 (432)
Q Consensus       115 ~p~i~l~~~~~~~~~-~y~~g~~~~~~l~~fi~~~~~p~v~~l~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  192 (432)
                      +|++++|+.+. ... .| .|..+.+.|..||.....|.+..++. +.+.. +.....+++.||.++  +......|.++
T Consensus        83 ~Pt~~~f~~G~-~~~~~~-~G~~~~~~l~~~i~~~~~~~v~~l~~~~~l~~-l~~~~~~~v~ff~~~--~~~~~~~f~~~  157 (382)
T 2r2j_A           83 YPTLKLFRNGM-MMKREY-RGQRSVKALADYIRQQKSDPIQEIRDLAEITT-LDRSKRNIIGYFEQK--DSDNYRVFERV  157 (382)
T ss_dssp             ESEEEEEETTE-EEEEEC-CSCCSHHHHHHHHHHHHSCCCEEC-------------CCEEEEEESCS--SSHHHHHHHHH
T ss_pred             CCEEEEEeCCc-Eeeeee-cCcchHHHHHHHHHHhccCCceecCCHHHHHH-hcCCCCEEEEEECCC--CChhHHHHHHH
Confidence            79999998542 223 58 89999999999999998888888864 45666 455555667777554  22345679999


Q ss_pred             HHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCC-CCceecCCCCC-CHHHHHHHHHHHhcCCcCccccC
Q 013976          193 AKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGND-DAKKHILDGEL-TLDKIKTFGEDFLEGKLKPFFKS  270 (432)
Q Consensus       193 a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~-~~~~y~~~~~~-~~~~i~~fi~~~~~g~l~~~~~s  270 (432)
                      |..+++.+.|+...+.       +++.+++++.  | +++...+ ......|.|.+ +.+.|.+||....-         
T Consensus       158 A~~~~~~~~F~~~~~~-------~~~~~~v~~~--p-i~~~~~~~~~~~~~y~g~~~~~~~l~~fi~~~~~---------  218 (382)
T 2r2j_A          158 ANILHDDCAFLSAFGD-------VSKPERYSGD--N-IIYKPPGHSAPDMVYLGAMTNFDVTYNWIQDKCV---------  218 (382)
T ss_dssp             HHHHTTTCEEEEEESC-------C--------C--E-EEEECSSSSSCCEECCSCTTCHHHHHHHHHHHHS---------
T ss_pred             HHHhhccceEEEEehh-------hHHhhCCCCC--c-eEECCCCCCCcCcccCCCCCCHHHHHHHHHhccc---------
Confidence            9999998998887752       3567788776  7 6566542 23456788988 99999999998652         


Q ss_pred             CCCCCCCCCceEEEecccchhhhhcCCCcEEEEEeCCCCh-hhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccC
Q 013976          271 DPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCG-HCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRA  347 (432)
Q Consensus       271 e~~p~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~-~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~  347 (432)
                              +.+..++..++.+++ ..+.+++|+|+.++|. .|+.+...+.+++..+++  ++.|+.+|++.+..  ..+
T Consensus       219 --------p~v~elt~~~~~~~~-~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~--~i~f~~id~~~~~~~~~~~  287 (382)
T 2r2j_A          219 --------PLVREITFENGEELT-EEGLPFLILFHMKEDTESLEIFQNEVARQLISEKG--TINFLHADCDKFRHPLLHI  287 (382)
T ss_dssp             --------CSSEECCHHHHHHHH-TTCCCEEEEEECTTCCHHHHHHHHHHHHHTGGGTT--TSEEEEEETTTTHHHHHHT
T ss_pred             --------CceEecChhhHHHHh-cCCCcEEEEEecCCchHHHHHHHHHHHHHHHHhCC--eeEEEEEchHHhHHHHHHc
Confidence                    236788999998854 6678899999999874 455555666666666665  79999999998765  567


Q ss_pred             CCC--CCceEEEEeCCCcccCceeccCCCCHHHHHHHHHhcCCCCCccc
Q 013976          348 KSD--GFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPFKIQ  394 (432)
Q Consensus       348 ~i~--~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~~~~~  394 (432)
                      +++  .+|.++++..++.. ....+.+..+.+.|.+||++..+.+....
T Consensus       288 gl~~~~~P~i~i~~~~~~y-~~~~~~~~~~~~~i~~F~~d~~~Gkl~p~  335 (382)
T 2r2j_A          288 QKTPADCPVIAIDSFRHMY-VFGDFKDVLIPGKLKQFVFDLHSGKLHRE  335 (382)
T ss_dssp             TCCGGGCSEEEEECSSCEE-ECCCSGGGGSTTHHHHHHHHHHHTTTSSC
T ss_pred             CCCccCCCEEEEEcchhcC-CCCccccccCHHHHHHHHHHHHCCCcccc
Confidence            776  78999998654321 11123455677999999999987766543

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A

Probab=99.83  E-value=3.6e-20  Score=149.53  Aligned_cols=127  Identities=21%  Similarity=0.333  Sum_probs=113.9

Q ss_pred             cCCCceeecCCCchhhhccCCCcceEEEEEeCcchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCC
Q 013976          148 NKLPLVTIFTRENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAP  227 (432)
Q Consensus       148 ~~~p~v~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~  227 (432)
                      ++.|++.+++.+++..++..+.++++.||+++++|+.+.+.++++|++|++++.|+++|.++   ++.+++.||+++...
T Consensus         3 c~~plv~~~t~~~f~~~~~~~~pv~v~f~a~~~~c~~~~p~l~~~A~~~~gk~~f~~vd~d~---~~~~a~~~gi~~~~i   79 (133)
T 2djk_A            3 LGSPLIGEIGPETYSDYMSAGIPLAYIFAETAEERKELSDKLKPIAEAQRGVINFGTIDAKA---FGAHAGNLNLKTDKF   79 (133)
T ss_dssp             CSCCCSEECCHHHHHHHHHTTSCEEEEECSCSSSHHHHHHHHHHHHHSSTTTSEEEEECTTT---TGGGTTTTTCCSSSS
T ss_pred             cccCceeccChHHHHHHhcCCCCEEEEEecChhhHHHHHHHHHHHHHHhCCeEEEEEEchHH---hHHHHHHcCCCcccC
Confidence            57899999999999998887778788888888999999999999999999999999999987   568999999998667


Q ss_pred             cEEEEEeCCCCceecCC--CCCCHHHHHHHHHHHhcCCcCccccCCCCCCCC
Q 013976          228 KVLAYTGNDDAKKHILD--GELTLDKIKTFGEDFLEGKLKPFFKSDPIPETN  277 (432)
Q Consensus       228 P~i~i~~~~~~~~y~~~--~~~~~~~i~~fi~~~~~g~l~~~~~se~~p~~~  277 (432)
                      |+++++...+++.|.+.  |.++.+.|.+|++++++|+++|+++||++|+++
T Consensus        80 Ptl~i~~~~~g~~~~~~~~g~~~~~~l~~fi~~~l~Gkl~p~~kSe~iP~~~  131 (133)
T 2djk_A           80 PAFAIQEVAKNQKFPFDQEKEITFEAIKAFVDDFVAGKIEPSIKSEPIPEKQ  131 (133)
T ss_dssp             SEEEEECTTTCCBCCCCSSSCCCHHHHHHHHHHHHHTCCCCSSCCCCCCTTS
T ss_pred             CEEEEEecCcCcccCCCCccccCHHHHHHHHHHHHcCCcCccccCCCCCCcC
Confidence            99999976445667776  999999999999999999999999999999874

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=99.82  E-value=6e-18  Score=167.03  Aligned_cols=306  Identities=17%  Similarity=0.188  Sum_probs=230.3

Q ss_pred             ceeeCCHHHHHHHhhcC---CeEEEEEecCCCcc---hHHHHHHHh-ccCCCceEEEeC---cHHHHhHcCCCCCCCCCe
Q 013976           48 IYNITTLDEAERVLTSE---TKVVLGYLNSLVGS---ESEVLADAS-RLEDDVNFYQTT---NPDVAKIFHLDSKVNRPA  117 (432)
Q Consensus        48 ~~~i~~~~~l~~~~~~~---~~~vv~f~~~~~~~---~~~~f~~~a-~~~~~~~F~~~~---~~~~~~~~~~~~~~~~p~  117 (432)
                      +..| +.+++++++..+   +.++|.|+.+.|++   ....|.++| .+.+.+.|+.++   +.++|+++|+..   .|+
T Consensus         3 v~~l-~~~~f~~~i~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~v~~---~Pt   78 (481)
T 3f8u_A            3 VLEL-TDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGIVPLAKVDCTANTNTCNKYGVSG---YPT   78 (481)
T ss_dssp             CEEE-CTTTHHHHTTCCSSSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCCEEEEETTTCHHHHHHTTCCE---ESE
T ss_pred             eEEe-cHHHHHHHHHhCCCCCeEEEEEECCCCHHHHHhHHHHHHHHHHhcCceEEEEEECCCCHHHHHhcCCCC---CCE
Confidence            5566 468888998877   89999999999865   556788888 566668888865   778999999986   799


Q ss_pred             EEEEecCCCceecccCCCCCHHHHHHHHHhcCCCceeecC-CCchhhhccCCCcceEEEEEeCcchhhhHHHHHHHHHhc
Q 013976          118 LVMVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFT-RENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSF  196 (432)
Q Consensus       118 i~l~~~~~~~~~~y~~g~~~~~~l~~fi~~~~~p~v~~l~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~~  196 (432)
                      +++|+.+ +....| .|..+.+.|..|+.....|.+.+++ .+.+..+.......++.||.++  +......|.++|..+
T Consensus        79 l~~~~~g-~~~~~~-~G~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~vv~~~~~~--~~~~~~~f~~~a~~~  154 (481)
T 3f8u_A           79 LKIFRDG-EEAGAY-DGPRTADGIVSHLKKQAGPASVPLRTEEEFKKFISDKDASIVGFFDDS--FSEAHSEFLKAASNL  154 (481)
T ss_dssp             EEEEETT-EEEEEC-CSCSSHHHHHHHHHHHTSCSEEEECSHHHHHHHTTSSSCEEEEEESCT--TCHHHHHHHHHHHHH
T ss_pred             EEEEeCC-ceeeee-cCccCHHHHHHHHHhhcccCceecCCHHHHHHHHhcCCcEEEEEECCC--ccchHHHHHHHHHHh
Confidence            9999864 356778 9999999999999999999998884 4667777666655555566543  456678899999999


Q ss_pred             cCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEe------CCCCceecCC-CCCCHHHHHHHHHHHhcCCcCcccc
Q 013976          197 KGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTG------NDDAKKHILD-GELTLDKIKTFGEDFLEGKLKPFFK  269 (432)
Q Consensus       197 ~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~------~~~~~~y~~~-~~~~~~~i~~fi~~~~~g~l~~~~~  269 (432)
                      ++.+.|+.+.      ...+++.++++..  | ++++.      ........|. |..+.+.|.+||....-        
T Consensus       155 ~~~~~F~~~~------~~~~~~~~~v~~~--~-i~~~~p~~~~~~~~~~~~~y~~~~~~~~~l~~fi~~~~~--------  217 (481)
T 3f8u_A          155 RDNYRFAHTN------VESLVNEYDDNGE--G-IILFRPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQENIF--------  217 (481)
T ss_dssp             TTTSCEEEEC------CHHHHHHHCSSSE--E-EEEECCGGGCBTTBCSEEECCCSSCCHHHHHHHHHHHTT--------
T ss_pred             ccCceEEEEC------CHHHHHHhCCCCC--c-EEEEecccccCccCCcccccCCCCCCHHHHHHHHHHhCC--------
Confidence            9999999875      3467899999765  5 55554      2234556777 78999999999998653        


Q ss_pred             CCCCCCCCCCceEEEecccchhhhhcCCCcEEEEEeCCC-Chh---hhhhHHHHHHHHHHhcCC-CCEEEEEEeCCCccc
Q 013976          270 SDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPW-CGH---CQAFEPTYNKLAKHLRGV-DSIVIAKMDGTTNEH  344 (432)
Q Consensus       270 se~~p~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~-c~~---c~~~~~~~~~la~~~~~~-~~~~~~~id~~~~~~  344 (432)
                               +.+..++..++..+.   +.+.++.|+... ...   +..+...+.++|+.+++. ..+.|+.+|+.....
T Consensus       218 ---------p~v~e~t~~n~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~vA~~~~~k~~~i~F~~~D~~~~~~  285 (481)
T 3f8u_A          218 ---------GICPHMTEDNKDLIQ---GKDLLIAYYDVDYEKNAKGSNYWRNRVMMVAKKFLDAGHKLNFAVASRKTFSH  285 (481)
T ss_dssp             ---------TTSCEECTTTHHHHT---TSSEEEEEECCCTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEETTTTHH
T ss_pred             ---------CCccccChhHHHHhc---CCCceEEEEecccccchhhHHHHHHHHHHHHHHhcCCCceEEEEEEcHHHHHH
Confidence                     236678888988865   456666666533 222   233577899999999873 349999999888765


Q ss_pred             --ccCCCC----CCceEEEEeCCCcccCceeccCCCCHH--HHHHHHHhcCCCCCcc
Q 013976          345 --HRAKSD----GFPTILFFPAGNKSFDPINVDVDRTVV--ALYKFLKKNASIPFKI  393 (432)
Q Consensus       345 --~~~~i~----~~P~i~~~~~g~~~~~~~~y~g~~~~~--~l~~fi~~~~~~~~~~  393 (432)
                        ..++++    ..|.++++..+..   ...+.+..+.+  .|.+|+.+........
T Consensus       286 ~l~~~gl~~~~~~~P~~~i~~~~~~---ky~~~~~~t~e~~~l~~f~~~~~~g~~~~  339 (481)
T 3f8u_A          286 ELSDFGLESTAGEIPVVAIRTAKGE---KFVMQEEFSRDGKALERFLQDYFDGNLKR  339 (481)
T ss_dssp             HHGGGTCCCCTTCSCEEEEECSSSC---EEECCSCCCTTSHHHHHHHHHHHHTCCCC
T ss_pred             HHHHcCCCcccCCCcEEEEEcCCCc---ccCCCcccCccHHHHHHHHHHHhcCCccc
Confidence              567776    6899999964332   22566778888  9999999988765543

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=99.82  E-value=8.8e-20  Score=146.17  Aligned_cols=109  Identities=27%  Similarity=0.480  Sum_probs=98.1

Q ss_pred             CCceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcC---CCCEEEEEEeCCCccc--ccCCCCCC
Q 013976          278 DGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRG---VDSIVIAKMDGTTNEH--HRAKSDGF  352 (432)
Q Consensus       278 ~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~---~~~~~~~~id~~~~~~--~~~~i~~~  352 (432)
                      .+.|..|++++|++.+.+.+++++|.||++||++|+.+.|.|.+++..+..   ..++.|+.+|++.+..  .+++|.++
T Consensus        14 ~~~v~~l~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~   93 (127)
T 3h79_A           14 PSRVVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKYPDVIERMRVSGF   93 (127)
T ss_dssp             CCCCEECCTTTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTTCHHHHHHTTCCSS
T ss_pred             CCceEECChhhHHHHHhCCCCCEEEEEECCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEccccHhHHHhcCCccC
Confidence            567999999999998877789999999999999999999999999998752   2479999999999866  68999999


Q ss_pred             ceEEEEeCCCcccCceeccCCCCHHHHHHHHHhcC
Q 013976          353 PTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA  387 (432)
Q Consensus       353 P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  387 (432)
                      |++++|++|... .+..|.|.++.+.|.+||.+++
T Consensus        94 Pt~~~~~~g~~~-~~~~~~G~~~~~~l~~~i~~~s  127 (127)
T 3h79_A           94 PTMRYYTRIDKQ-EPFEYSGQRYLSLVDSFVFQNT  127 (127)
T ss_dssp             SEEEEECSSCSS-SCEECCSCCCHHHHHHHHHHHC
T ss_pred             CEEEEEeCCCCC-CceEecCCccHHHHHHHHHhcC
Confidence            999999999876 5679999999999999999864

>3bj5_A Protein disulfide-isomerase; thioredoxin fold, chaperone, endoplasmic reticulum, isomeras membrane, redox-active center; 2.20A {Homo sapiens}

Probab=99.82  E-value=1.1e-19  Score=148.40  Aligned_cols=133  Identities=36%  Similarity=0.621  Sum_probs=109.7

Q ss_pred             HHHhcCCCceeecCCCchhhhccCCCcceEEEEEeC--cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhC
Q 013976          144 FVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVS--NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFG  221 (432)
Q Consensus       144 fi~~~~~p~v~~l~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~  221 (432)
                      -+..+++|+|.++|.++...++..+.+..+++|...  ...+.+++.++++|++|+|++.|+++|..... +..+++.||
T Consensus         7 ~~~~~~~PLV~e~t~en~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~fkgki~Fv~vd~~~~~-~~~~l~~fG   85 (147)
T 3bj5_A            7 HMKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFAFIDSDHTD-NQRILEFFG   85 (147)
T ss_dssp             --------CEEECCTTTHHHHHSSSCCEEEEEECCTTSSSHHHHHHHHHHHHHTTTTTCEEEEECTTCGG-GHHHHHHTT
T ss_pred             chhhccCCeeEEeccccHHHHhcCCCceEEEEEecCCcHhHHHHHHHHHHHHHHcCCceEEEEEecchHh-HHHHHHHcC
Confidence            356789999999999999999998887777767653  55788999999999999999999999985443 556889999


Q ss_pred             CCCCCCcEEEEEeC-CCCceecCC-CCCCHHHHHHHHHHHhcCCcCccccCCCCCCCC
Q 013976          222 ITGEAPKVLAYTGN-DDAKKHILD-GELTLDKIKTFGEDFLEGKLKPFFKSDPIPETN  277 (432)
Q Consensus       222 i~~~~~P~i~i~~~-~~~~~y~~~-~~~~~~~i~~fi~~~~~g~l~~~~~se~~p~~~  277 (432)
                      ++...+|+++|.+. ..+.+|.+. ++++.++|.+||++|++|+++|+++|||+|++|
T Consensus        86 l~~~~~P~v~i~~~~~~~~Ky~~~~~~~t~~~i~~Fv~d~l~GkL~p~~KSEpiPe~w  143 (147)
T 3bj5_A           86 LKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEGKIKPHLMSQELPEDW  143 (147)
T ss_dssp             CCGGGCSEEEEEECSSSCEEECCSCCCCCHHHHHHHHHHHHTTCSCEEECCSCCCGGG
T ss_pred             CCcccCCEEEEEecccccccCCCCcccCCHHHHHHHHHHHHcCCccccccCCCCCCCc
Confidence            99877899999986 556788875 789999999999999999999999999999884

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=99.79  E-value=2e-18  Score=137.00  Aligned_cols=114  Identities=46%  Similarity=0.853  Sum_probs=99.4

Q ss_pred             CCCCCceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcC---CCCEEEEEEeCCCcccccCCCCC
Q 013976          275 ETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRG---VDSIVIAKMDGTTNEHHRAKSDG  351 (432)
Q Consensus       275 ~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~---~~~~~~~~id~~~~~~~~~~i~~  351 (432)
                      +...+.|..|++++|++.+...+++++|+||++||++|+.+.|.|.+++..+.+   ..++.|+.+|++.++... +|.+
T Consensus         3 ~~~~~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~-~v~~   81 (121)
T 2djj_A            3 LGSEGPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATANDVPD-EIQG   81 (121)
T ss_dssp             CCCSCSSEECCTTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSCCSS-CCSS
T ss_pred             ccCCCCeEEecccCHHHHhhcCCCCEEEEEECCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECccccccc-ccCc
Confidence            345677999999999998767789999999999999999999999999999986   347999999999988766 9999


Q ss_pred             CceEEEEeCCCcccCceeccCCCCHHHHHHHHHhcCCCC
Q 013976          352 FPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIP  390 (432)
Q Consensus       352 ~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~  390 (432)
                      +|++++|.+|..+ ....|.|..+.+.|.+||++++...
T Consensus        82 ~Pt~~~~~~~~~~-~~~~~~G~~~~~~l~~~i~~~~~~~  119 (121)
T 2djj_A           82 FPTIKLYPAGAKG-QPVTYSGSRTVEDLIKFIAENGKYK  119 (121)
T ss_dssp             SSEEEEECSSCTT-SCCCCCCCSCHHHHHHHHHHTSSSC
T ss_pred             CCeEEEEeCcCCC-CceEecCCCCHHHHHHHHHhccCcC
Confidence            9999999888653 2448999999999999999988654

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=99.78  E-value=1.5e-17  Score=152.86  Aligned_cols=215  Identities=16%  Similarity=0.196  Sum_probs=167.9

Q ss_pred             CCceeecCCCchhhhc-cCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCC
Q 013976          150 LPLVTIFTRENAPSVF-ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAP  227 (432)
Q Consensus       150 ~p~v~~l~~~~~~~~~-~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~  227 (432)
                      .+.+.+++.++|...+ ..+.++++.||++| ++|+.+.+.|.++|..+.+.+.|+.+||+... .+.+|+.|||.++  
T Consensus        16 ~~~vv~lt~~~f~~~i~~~~~~vlV~F~A~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~d~~~-~~~l~~~~~I~~~--   92 (298)
T 3ed3_A           16 DPHISELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNK-NKALCAKYDVNGF--   92 (298)
T ss_dssp             CTTCEECCHHHHHHHHTSSSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTSTT-THHHHHHTTCCBS--
T ss_pred             CCCeEEeCHHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHccCCcEEEEEEccCcc-CHHHHHhCCCCcc--
Confidence            4568899999999887 45667889999999 99999999999999999999999999998544 6789999999998  


Q ss_pred             cEEEEEeCCCC----------------ceecCCCCCCHHHHHHHHHHHhcCCcCccccCCCCCCCCCCceEEEe-cccch
Q 013976          228 KVLAYTGNDDA----------------KKHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVV-GNNFD  290 (432)
Q Consensus       228 P~i~i~~~~~~----------------~~y~~~~~~~~~~i~~fi~~~~~g~l~~~~~se~~p~~~~~~v~~l~-~~~~~  290 (432)
                      |+++++..+..                ....|.|.++.+.|.+|+.+.+.                 ..+..+. .++++
T Consensus        93 Pt~~~~~~g~~v~~~~g~~~~~~~~~~~~~~y~G~r~~~~i~~fl~~~~~-----------------~~v~~i~~~~~l~  155 (298)
T 3ed3_A           93 PTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDFSLSRIR-----------------SYVKKFVRIDTLG  155 (298)
T ss_dssp             SEEEEEECCCC-------------CCCEEEECCSCCSHHHHHHHHHTTCC-----------------CCEEECSCGGGHH
T ss_pred             ceEEEEECCceeecccccccccccccccceeecCCcCHHHHHHHHHHhcc-----------------cccEEcCCHHHHH
Confidence            99999987641                35678999999999999998754                 2355664 46788


Q ss_pred             hhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc----ccCC-----C------------
Q 013976          291 EIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH----HRAK-----S------------  349 (432)
Q Consensus       291 ~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~----~~~~-----i------------  349 (432)
                      +++...+.+.+++|. ..    ....+.|..+|..+.+  .+.|+.++......    .++.     |            
T Consensus       156 ~~l~~~~~~~vi~fs-~~----~~~~~~f~~~A~~~~~--~~~F~~v~~~~~a~~~~~~~~~~~~p~i~~~~~~~~~~~~  228 (298)
T 3ed3_A          156 SLLRKSPKLSVVLFS-KQ----DKISPVYKSIALDWLG--KFDFYSISNKKLKQLTDMNPTYEKTPEIFKYLQKVIPEQR  228 (298)
T ss_dssp             HHHTSCSSEEEEEEE-SS----SSCCHHHHHHHHHTBT--TEEEEEEEGGGCCCCCTTCTTSTTCHHHHHHHHHHHHHHT
T ss_pred             HHHhcCCceEEEEEc-CC----CcchHHHHHHHHHhhc--CcEEEEEcchHhhhhhhhhhhcccCcchhhhhhccccccc
Confidence            877544566677663 22    2346789999999988  79999998443221    1222     2            


Q ss_pred             -CCCceEEEEeCCCcccCceeccC-CCCHHHHHHHHHhcCCCCCcc
Q 013976          350 -DGFPTILFFPAGNKSFDPINVDV-DRTVVALYKFLKKNASIPFKI  393 (432)
Q Consensus       350 -~~~P~i~~~~~g~~~~~~~~y~g-~~~~~~l~~fi~~~~~~~~~~  393 (432)
                       ...|++++|+....  +++.|.| ..+.+.|.+||.++....+..
T Consensus       229 ~~~~P~lv~~~~~~~--~~~~y~g~~~~~~~i~~fi~~~~~~~p~~  272 (298)
T 3ed3_A          229 QSDKSKLVVFDADKD--KFWEYEGNSINKNDISKFLRDTFSITPNE  272 (298)
T ss_dssp             TCSSCEEEEEETTTT--EEEECCCSSCCHHHHHHHHHHHHTCCCSS
T ss_pred             ccCCCeEEEEcCCCC--ceEEeccccCCHHHHHHHHHhhcCCCCCc
Confidence             67999999987655  6779996 789999999999776654333

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=99.77  E-value=9.6e-19  Score=134.46  Aligned_cols=94  Identities=26%  Similarity=0.529  Sum_probs=83.4

Q ss_pred             cccchhhhhcC-CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEEEeCCC
Q 013976          286 GNNFDEIVLDE-SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGN  362 (432)
Q Consensus       286 ~~~~~~~~~~~-~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~~~g~  362 (432)
                      .++|++.+.+. +++++|.|||+||++|+.+.|.|.+++..+.+   +.|+.+|++++..  .+++|.++||+++|++|+
T Consensus         8 ~~~f~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~---~~~~~vd~d~~~~l~~~~~V~~~PT~~~~~~G~   84 (105)
T 3zzx_A            8 QEDFTKQLNEAGNKLVVIDFYATWCGPCKMIAPKLEELSQSMSD---VVFLKVDVDECEDIAQDNQIACMPTFLFMKNGQ   84 (105)
T ss_dssp             HHHHHHHHHHTTTSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT---EEEEEEETTTCHHHHHHTTCCBSSEEEEEETTE
T ss_pred             HHHHHHHHHhcCCCEEEEEEECCCCCCccCCCcchhhhhhccCC---eEEEEEecccCHHHHHHcCCCeecEEEEEECCE
Confidence            47898888654 57999999999999999999999999998865   8999999999877  689999999999999998


Q ss_pred             cccCceeccCCCCHHHHHHHHHhc
Q 013976          363 KSFDPINVDVDRTVVALYKFLKKN  386 (432)
Q Consensus       363 ~~~~~~~y~g~~~~~~l~~fi~~~  386 (432)
                      .+.   ++.| .+.+.|.+||++|
T Consensus        85 ~v~---~~~G-~~~~~l~~~i~k~  104 (105)
T 3zzx_A           85 KLD---SLSG-ANYDKLLELVEKN  104 (105)
T ss_dssp             EEE---EEES-CCHHHHHHHHHHH
T ss_pred             EEE---EEeC-cCHHHHHHHHHhc
Confidence            775   6777 6899999999986

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.77  E-value=6.5e-18  Score=136.37  Aligned_cols=112  Identities=49%  Similarity=0.940  Sum_probs=99.2

Q ss_pred             CCceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceE
Q 013976          278 DGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTI  355 (432)
Q Consensus       278 ~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i  355 (432)
                      ++.|..|++.+|+..+...+++++|+||++||++|+.+.|.|.+++..+....++.|+.+|++.+..  .+++|.++|++
T Consensus         6 ~~~v~~l~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~   85 (133)
T 2dj3_A            6 SGPVKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITNDQYKVEGFPTI   85 (133)
T ss_dssp             SCSSEECCTTTCCCCCTCTTSEEEEEECCTTCSHHHHHHHHHHHHHHHHTTSSSEEEEEECTTTSCCCCSSCCCSSSSEE
T ss_pred             CCceEEEcCCCHHHHhccCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCEEEEEecCCcCHHHHhhcCCCcCCEE
Confidence            5679999999999988666899999999999999999999999999999864479999999998877  57999999999


Q ss_pred             EEEeCCCcccCceecc-CCCCHHHHHHHHHhcCCCC
Q 013976          356 LFFPAGNKSFDPINVD-VDRTVVALYKFLKKNASIP  390 (432)
Q Consensus       356 ~~~~~g~~~~~~~~y~-g~~~~~~l~~fi~~~~~~~  390 (432)
                      ++|.+|..+ ..+.|. |..+.+.|.+||++++...
T Consensus        86 ~~~~~g~~~-~~~~~~gg~~~~~~l~~~l~~~~~~~  120 (133)
T 2dj3_A           86 YFAPSGDKK-NPIKFEGGNRDLEHLSKFIDEHATKR  120 (133)
T ss_dssp             EEECTTCTT-SCEECCSSCCSTTHHHHHHHHHSSSC
T ss_pred             EEEeCCCcc-cceEecCCCcCHHHHHHHHHHhcccc
Confidence            999988776 566788 4589999999999998654

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*

Probab=99.75  E-value=8.9e-18  Score=139.88  Aligned_cols=120  Identities=18%  Similarity=0.255  Sum_probs=99.2

Q ss_pred             CCceEEEecccchhhhhcC-CCcEEEEEeC-------CCChhhhhhHHHHHHHHHHhcCC---CCEEEEEEeCCCccc--
Q 013976          278 DGDVKIVVGNNFDEIVLDE-SKDVLLEIYA-------PWCGHCQAFEPTYNKLAKHLRGV---DSIVIAKMDGTTNEH--  344 (432)
Q Consensus       278 ~~~v~~l~~~~~~~~~~~~-~~~~lv~f~~-------~~c~~c~~~~~~~~~la~~~~~~---~~~~~~~id~~~~~~--  344 (432)
                      .+.|..|+..+|++.+... +.++||+|||       +||++|+.+.|+|+++|..+...   .++.|+++|++++..  
T Consensus        17 ~~~vi~lt~~nF~~~v~~~~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kvD~d~~~~la   96 (178)
T 3ga4_A           17 DTGVITVTADNYPLLSRGVPGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVDVNEVPQLV   96 (178)
T ss_dssp             TTSEEECCTTTHHHHTTCCTTCEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTCHHHH
T ss_pred             cCCCEECCHHHHHHHHcccCCCcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEEECccCHHHH
Confidence            3468899999999987543 4679999999       49999999999999999999711   279999999999887  


Q ss_pred             ccCCCCCCceEEEEeCCCccc---------Cceec---cC-CCCHHHHHHHHHhcCCCCCcccCCC
Q 013976          345 HRAKSDGFPTILFFPAGNKSF---------DPINV---DV-DRTVVALYKFLKKNASIPFKIQKPT  397 (432)
Q Consensus       345 ~~~~i~~~P~i~~~~~g~~~~---------~~~~y---~g-~~~~~~l~~fi~~~~~~~~~~~~~~  397 (432)
                      .+++|.++||+++|++|....         .+..|   .| .++++.|.+||.++++..+.+..|+
T Consensus        97 ~~~~I~siPtl~~F~~g~~~~~~~~~~~~~~~~~y~~~~~~~~~ae~la~fi~~~t~~~i~I~rp~  162 (178)
T 3ga4_A           97 KDLKLQNVPHLVVYPPAESNKQSQFEWKTSPFYQYSLVPENAENTLQFGDFLAKILNISITVPQAF  162 (178)
T ss_dssp             HHTTCCSSCEEEEECCCCGGGGGGCCTTTSCCEEECCCGGGTTCHHHHHHHHHHHHTCCCCCCCSC
T ss_pred             HHcCCCCCCEEEEEcCCCCCCccccccccCCcceeecccCCCcCHHHHHHHHHHhcCCCccccCCC
Confidence            799999999999999997542         23455   35 8999999999999998777665553

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=99.75  E-value=8.6e-17  Score=143.72  Aligned_cols=202  Identities=16%  Similarity=0.234  Sum_probs=166.9

Q ss_pred             CCceeeCCHHHHHHHhhcCCeEEEEEecCCCcc---hHHHHHHHh-ccCC---CceEEEe---CcHHHHhHcCCCCCCCC
Q 013976           46 PGIYNITTLDEAERVLTSETKVVLGYLNSLVGS---ESEVLADAS-RLED---DVNFYQT---TNPDVAKIFHLDSKVNR  115 (432)
Q Consensus        46 ~~~~~i~~~~~l~~~~~~~~~~vv~f~~~~~~~---~~~~f~~~a-~~~~---~~~F~~~---~~~~~~~~~~~~~~~~~  115 (432)
                      ..+..+ +.+.++.++...+.++|.|+.+.|.+   ....|.+++ .+.+   .+.|+.+   .+.+++++|++..   .
T Consensus        15 ~~v~~l-~~~~~~~~~~~~~~v~v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~---~   90 (241)
T 3idv_A           15 NGVLVL-NDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASVLASRFDVSG---Y   90 (241)
T ss_dssp             TTEEEE-CTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETTTCHHHHHHTTCCS---S
T ss_pred             CCcEEe-cccCHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhhcCCceEEEEEeccCCHHHHHhcCCCc---C
Confidence            346666 45889999988899999999998865   445666666 3333   3778774   3678999999986   7


Q ss_pred             CeEEEEecCCCceecccCCCCCHHHHHHHHHhcCCC-------ceeecCCCchhhhccCCCcceEEEEEeC-cchhhhHH
Q 013976          116 PALVMVKKETEKISYFADGKFDKSTIADFVFSNKLP-------LVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLP  187 (432)
Q Consensus       116 p~i~l~~~~~~~~~~y~~g~~~~~~l~~fi~~~~~p-------~v~~l~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~  187 (432)
                      |++++|+.  +....| .|..+.+.|..||.....+       .+..++.+++......+..+++.||++| ++|+.+.+
T Consensus        91 Pt~~~~~~--g~~~~~-~g~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p  167 (241)
T 3idv_A           91 PTIKILKK--GQAVDY-EGSRTQEEIVAKVREVSQPDWTPPPEVTLVLTKENFDEVVNDADIILVEFYAPWCGHCKKLAP  167 (241)
T ss_dssp             SEEEEEET--TEEEEC-CSCSCHHHHHHHHHHHHSTTCCCCCCSSEECCTTTHHHHHHHCSEEEEEEECTTCTGGGGTHH
T ss_pred             CEEEEEcC--CCcccc-cCcccHHHHHHHHhhccCcccccccccceeccHHHHHHhhccCCeEEEEEECCCCHHHHHhHH
Confidence            99999985  345568 8999999999999876554       5778899999998888888889999999 99999999


Q ss_pred             HHHHHHHhccCc---eEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCceecCCCCCCHHHHHHHHHHHhc
Q 013976          188 VFEEAAKSFKGK---LIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  261 (432)
Q Consensus       188 ~~~~~a~~~~~~---i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  261 (432)
                      .+.++|.++.++   +.|+.+|++.   ++.+++.|||.+.  |+++++.++  +...|.|.++.+.|.+|+.+...
T Consensus       168 ~~~~~a~~~~~~~~~v~~~~vd~~~---~~~l~~~~~v~~~--Pt~~~~~~g--~~~~~~g~~~~~~l~~~l~~~~~  237 (241)
T 3idv_A          168 EYEKAAKELSKRSPPIPLAKVDATA---ETDLAKRFDVSGY--PTLKIFRKG--RPYDYNGPREKYGIVDYMIEQSG  237 (241)
T ss_dssp             HHHHHHHHHHTSSSCCCEEEEETTT---CHHHHHHTTCCSS--SEEEEEETT--EEEECCSCCSHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhccCCcEEEEEEECCC---CHHHHHHcCCccc--CEEEEEECC--eEEEecCCCCHHHHHHHHHhhhC
Confidence            999999999765   9999999998   5689999999988  999998754  45568999999999999999764

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=99.75  E-value=2.6e-16  Score=156.10  Aligned_cols=299  Identities=14%  Similarity=0.207  Sum_probs=224.6

Q ss_pred             CceeeCCHHHHHHHhhcCCeEEEEEecCCCcc---hHHHHHHHh-ccCC-CceEEEeC---cHHHHhHcCCCCCCCCCeE
Q 013976           47 GIYNITTLDEAERVLTSETKVVLGYLNSLVGS---ESEVLADAS-RLED-DVNFYQTT---NPDVAKIFHLDSKVNRPAL  118 (432)
Q Consensus        47 ~~~~i~~~~~l~~~~~~~~~~vv~f~~~~~~~---~~~~f~~~a-~~~~-~~~F~~~~---~~~~~~~~~~~~~~~~p~i  118 (432)
                      .+..+ +.+++++++..++.++|.|+.+.|++   +...|.++| .+.+ .+.|+.++   +.++|+++|+..   +|++
T Consensus        15 ~v~~l-~~~~f~~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~v~~~~vd~~~~~~l~~~~~v~~---~Pt~   90 (504)
T 2b5e_A           15 AVVKL-ATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNIPG---FPSL   90 (504)
T ss_dssp             SCEEC-CTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTCHHHHHHTTCCS---SSEE
T ss_pred             CcEEC-CHHHHHHHHhcCCeEEEEEECCCCHHHHHhHHHHHHHHHHhccCCeEEEEEECCCCHHHHHhcCCCc---CCEE
Confidence            46677 46889999988999999999999865   556788887 5555 48888864   678999999986   7999


Q ss_pred             EEEecCCCc-eecccCCCCCHHHHHHHHHhcCCCceeecCCCchhhhccCCC--cceEEEEEeCcchhhhHHHHHHHHHh
Q 013976          119 VMVKKETEK-ISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPI--KNQLLLFAVSNDSEKLLPVFEEAAKS  195 (432)
Q Consensus       119 ~l~~~~~~~-~~~y~~g~~~~~~l~~fi~~~~~p~v~~l~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~a~~  195 (432)
                      ++|+.+... ...| .|..+.+.|.+||.....|.+.+++.  +..++....  ..++.||...  .......|.++|..
T Consensus        91 ~~~~~g~~~~~~~~-~G~~~~~~l~~~l~~~~~~~v~~i~~--~~~~~~~~~~~~~~v~~f~~~--~~~~~~~f~~~A~~  165 (504)
T 2b5e_A           91 KIFKNSDVNNSIDY-EGPRTAEAIVQFMIKQSQPAVAVVAD--LPAYLANETFVTPVIVQSGKI--DADFNATFYSMANK  165 (504)
T ss_dssp             EEEETTCTTCEEEC-CSCCSHHHHHHHHHHHTSCSEEECSC--HHHHHHHSCCSSCEEEEEESC--CHHHHHHHHHHHHH
T ss_pred             EEEeCCccccceee-cCCCCHHHHHHHHHHhcCCcceeHHH--HHHHHhcCCCceEEEEEeCCC--CchHHHHHHHHHHH
Confidence            999974321 7788 99999999999999999999999988  777766555  4566666553  23355689999999


Q ss_pred             ccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCceecCCCC-C---CHHHHHHHHHHHhcCCcCccccCC
Q 013976          196 FKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGE-L---TLDKIKTFGEDFLEGKLKPFFKSD  271 (432)
Q Consensus       196 ~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~-~---~~~~i~~fi~~~~~g~l~~~~~se  271 (432)
                      +++.+.|+.++  +      +++.+|++      ++++.... ....|.|. +   +.+.|.+||....-.         
T Consensus       166 ~~~~~~F~~~~--~------~~~~~~~~------i~l~~~~~-~~~~~~g~~~~~~~~~~l~~fi~~~~~p---------  221 (504)
T 2b5e_A          166 HFNDYDFVSAE--N------ADDDFKLS------IYLPSAMD-EPVVYNGKKADIADADVFEKWLQVEALP---------  221 (504)
T ss_dssp             TTTTCEEEEEE--C------TTSCCEEE------EEETTEEE-EEEECCSCHHHHTSHHHHHHHHHHHSSC---------
T ss_pred             hhcCcEEEEEH--H------HHHhcCCe------EEecCCCC-cccccCCcccccCCHHHHHHHHHhcccC---------
Confidence            99999999887  1      34556653      44443322 45567887 6   999999999886432         


Q ss_pred             CCCCCCCCceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCC
Q 013976          272 PIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKS  349 (432)
Q Consensus       272 ~~p~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i  349 (432)
                              .+..++..++..+. ....+++++|+...... ..+...|.++|+.+++  ++.|+.+|+.....  ..+++
T Consensus       222 --------~v~~~t~~~~~~~~-~~~~~~~~l~~~~~~~~-~~~~~~l~~~a~~~~~--~i~F~~id~~~~~~~~~~~gl  289 (504)
T 2b5e_A          222 --------YFGEIDGSVFAQYV-ESGLPLGYLFYNDEEEL-EEYKPLFTELAKKNRG--LMNFVSIDARKFGRHAGNLNM  289 (504)
T ss_dssp             --------SSCBCCHHHHHHHH-HTTSCEEEEEESSHHHH-HHHHHHHHHHHHHTTT--TCEEEEEEHHHHTTHHHHTTC
T ss_pred             --------CcccCCHhHHHHHh-cCCCcEEEEEecCcccH-HHHHHHHHHHHHhcCC--eeEEEEEehhhhHHHHHHcCC
Confidence                    24557778888865 56677888787654333 7788999999999997  79999999887655  46676


Q ss_pred             -CCCceEEEEeCCCcccCceecc--CC-----------CCHHHHHHHHHhcCCCCCc
Q 013976          350 -DGFPTILFFPAGNKSFDPINVD--VD-----------RTVVALYKFLKKNASIPFK  392 (432)
Q Consensus       350 -~~~P~i~~~~~g~~~~~~~~y~--g~-----------~~~~~l~~fi~~~~~~~~~  392 (432)
                       ..+|+++++...... + ..+.  +.           .+.+.|.+|+.+....+..
T Consensus       290 ~~~~P~v~i~~~~~~~-k-y~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~~~~g~~~  344 (504)
T 2b5e_A          290 KEQFPLFAIHDMTEDL-K-YGLPQLSEEAFDELSDKIVLESKAIESLVKDFLKGDAS  344 (504)
T ss_dssp             CSCSSEEEEEETTTTE-E-EECCCCCHHHHHTCCSCCCCCHHHHHHHHHHHHHTCCC
T ss_pred             cccCCEEEEEeCCcCc-c-cCCCCCccchhhccccccccCHHHHHHHHHHHHcCCCC
Confidence             469999999874332 1 1233  33           7899999999998876553

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=99.74  E-value=3e-18  Score=135.65  Aligned_cols=104  Identities=11%  Similarity=0.070  Sum_probs=94.7

Q ss_pred             CceEEEecccchhhhhcCCCcEEEEEeCCCC--hhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCce
Q 013976          279 GDVKIVVGNNFDEIVLDESKDVLLEIYAPWC--GHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPT  354 (432)
Q Consensus       279 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c--~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~  354 (432)
                      .....++..+|++.+...++++||+|||+||  ++|+.+.|++.+|+..|.+  ++.|+++|++++..  .+|+|.++||
T Consensus        15 ~g~~~vt~~~F~~~v~~~~~~vlVdF~A~wCr~gpCk~iaPvleela~e~~~--~v~~~KVdvDe~~~la~~ygV~siPT   92 (137)
T 2qsi_A           15 NAPTLVDEATVDDFIAHSGKIVVLFFRGDAVRFPEAADLAVVLPELINAFPG--RLVAAEVAAEAERGLMARFGVAVCPS   92 (137)
T ss_dssp             --CEEECTTTHHHHHHTSSSEEEEEECCCTTTCTTHHHHHHHHHHHHHTSTT--TEEEEEECGGGHHHHHHHHTCCSSSE
T ss_pred             cCCcccCHhHHHHHHhcCCCcEEEEEeCCccCCCchhhHHhHHHHHHHHccC--CcEEEEEECCCCHHHHHHcCCccCCE
Confidence            4456899999999986666699999999999  9999999999999999987  79999999999887  6899999999


Q ss_pred             EEEEeCCCcccCceeccCCCCHHHHHHHHHhcC
Q 013976          355 ILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA  387 (432)
Q Consensus       355 i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  387 (432)
                      +++|++|+.+.   +..|..+.+.|.++|++++
T Consensus        93 lilFkdG~~v~---~~vG~~~k~~l~~~l~~~l  122 (137)
T 2qsi_A           93 LAVVQPERTLG---VIAKIQDWSSYLAQIGAML  122 (137)
T ss_dssp             EEEEECCEEEE---EEESCCCHHHHHHHHHHHH
T ss_pred             EEEEECCEEEE---EEeCCCCHHHHHHHHHHHh
Confidence            99999999886   8899999999999999888

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=99.73  E-value=2.7e-17  Score=127.52  Aligned_cols=104  Identities=25%  Similarity=0.506  Sum_probs=93.6

Q ss_pred             CceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEE
Q 013976          279 GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTIL  356 (432)
Q Consensus       279 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~  356 (432)
                      +.|..++.++|++.+...+++++|+||++||++|+.+.|.|.+++..+.+  ++.++.+|++.+..  .++++.++|+++
T Consensus         2 ~~v~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~v~~~Pt~~   79 (108)
T 2trx_A            2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTAPKYGIRGIPTLL   79 (108)
T ss_dssp             TTEEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TEEEEEEETTTCTTHHHHTTCCSSSEEE
T ss_pred             CcceecchhhHHHHHHhcCCeEEEEEECCCCHhHHHHHHHHHHHHHHhCC--CcEEEEEECCCCHHHHHHcCCcccCEEE
Confidence            45888999999987777789999999999999999999999999999986  69999999998876  689999999999


Q ss_pred             EEeCCCcccCceeccCCCCHHHHHHHHHhcC
Q 013976          357 FFPAGNKSFDPINVDVDRTVVALYKFLKKNA  387 (432)
Q Consensus       357 ~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  387 (432)
                      +|++|+.+.   .+.|..+.+.|.+||++.+
T Consensus        80 ~~~~G~~~~---~~~G~~~~~~l~~~l~~~l  107 (108)
T 2trx_A           80 LFKNGEVAA---TKVGALSKGQLKEFLDANL  107 (108)
T ss_dssp             EEETTEEEE---EEESCCCHHHHHHHHHHHH
T ss_pred             EEeCCEEEE---EEecCCCHHHHHHHHHHhh
Confidence            998887654   7889999999999998865

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.72  E-value=2.5e-17  Score=134.21  Aligned_cols=112  Identities=32%  Similarity=0.645  Sum_probs=98.1

Q ss_pred             CCCceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCC-CCEEEEEEeCCCccc--ccCCCCCCc
Q 013976          277 NDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV-DSIVIAKMDGTTNEH--HRAKSDGFP  353 (432)
Q Consensus       277 ~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~-~~~~~~~id~~~~~~--~~~~i~~~P  353 (432)
                      ..+.|..|+..+|++.+ ..++++||+||++||++|+.+.|.|.+++..+.+. ..+.|+.+|++.+..  .+++|.++|
T Consensus        15 ~~~~v~~l~~~~~~~~~-~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P   93 (140)
T 2dj1_A           15 EENGVWVLNDGNFDNFV-ADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASMLASKFDVSGYP   93 (140)
T ss_dssp             EETTEEECCTTTHHHHH-TTCSEEEEEECCTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTTCHHHHHHTTCCSSS
T ss_pred             CCCCCEEcChHhHHHHH-hcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCcccHHHHHHCCCCccC
Confidence            35679999999999976 55789999999999999999999999999999863 359999999998865  689999999


Q ss_pred             eEEEEeCCCcccCceeccCCCCHHHHHHHHHhcCCCCCcc
Q 013976          354 TILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPFKI  393 (432)
Q Consensus       354 ~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~~~~  393 (432)
                      ++++|++|+ +.   .|.|..+.+.|.+||++++......
T Consensus        94 t~~~~~~G~-~~---~~~g~~~~~~l~~~l~~~~~~~~~~  129 (140)
T 2dj1_A           94 TIKILKKGQ-AV---DYDGSRTQEEIVAKVREVSQPDWTP  129 (140)
T ss_dssp             EEEEEETTE-EE---ECCSCCCHHHHHHHHHHHHSSSCCC
T ss_pred             eEEEEECCc-EE---EcCCCCCHHHHHHHHHHhcCCCCCC
Confidence            999998886 32   8999999999999999998766544

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=99.72  E-value=1.7e-17  Score=129.28  Aligned_cols=104  Identities=20%  Similarity=0.306  Sum_probs=94.8

Q ss_pred             CceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEE
Q 013976          279 GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTIL  356 (432)
Q Consensus       279 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~  356 (432)
                      ..+..++.++|++.+.+.+++++|.||++||++|+.+.|.|.+++..+.+  ++.|+.+|++.+..  .+++|.++|+++
T Consensus         4 ~~v~~l~~~~~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pt~~   81 (111)
T 3gnj_A            4 MSLEKLDTNTFEQLIYDEGKACLVMFSRKNCHVCQKVTPVLEELRLNYEE--SFGFYYVDVEEEKTLFQRFSLKGVPQIL   81 (111)
T ss_dssp             CCSEECCHHHHHHHHTTSCCCEEEEEECSSCHHHHHHHHHHHHHHHHTTT--TSEEEEEETTTCHHHHHHTTCCSSCEEE
T ss_pred             CcceecCHHHHHHHHHhcCCEEEEEEeCCCChhHHHHHHHHHHHHHHcCC--ceEEEEEECCcChhHHHhcCCCcCCEEE
Confidence            34888999999998877789999999999999999999999999999987  69999999999886  689999999999


Q ss_pred             EEeCCCcccCceeccCCCCHHHHHHHHHhcC
Q 013976          357 FFPAGNKSFDPINVDVDRTVVALYKFLKKNA  387 (432)
Q Consensus       357 ~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  387 (432)
                      +|++|+.+.   .+.|..+.+.|.+||++++
T Consensus        82 ~~~~g~~~~---~~~g~~~~~~l~~~l~~~l  109 (111)
T 3gnj_A           82 YFKDGEYKG---KMAGDVEDDEVEQMIADVL  109 (111)
T ss_dssp             EEETTEEEE---EEESSCCHHHHHHHHHHHH
T ss_pred             EEECCEEEE---EEeccCCHHHHHHHHHHHh
Confidence            999887654   7899999999999999875

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=99.72  E-value=2.1e-17  Score=132.65  Aligned_cols=104  Identities=11%  Similarity=0.108  Sum_probs=88.4

Q ss_pred             eEEEec-ccchhhhhc-CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEE
Q 013976          281 VKIVVG-NNFDEIVLD-ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTIL  356 (432)
Q Consensus       281 v~~l~~-~~~~~~~~~-~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~  356 (432)
                      +..|.. .+|++.+.. .++++||.|||+||++|+.+.|+|+++|..+.+  .+.|+++|+++++.  ..|+|.+.||++
T Consensus        23 v~~l~t~~~f~~~v~~~~~k~VVVdF~A~WCgPCk~m~PvleelA~e~~~--~v~f~kVDVDe~~e~a~~y~V~siPT~~  100 (160)
T 2av4_A           23 LQHLNSGWAVDQAIVNEDERLVCIRFGHDYDPDCMKMDELLYKVADDIKN--FCVIYLVDITEVPDFNTMYELYDPVSVM  100 (160)
T ss_dssp             CEECCSHHHHHHHHHHCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTT--TEEEEEEETTTCCTTTTTTTCCSSEEEE
T ss_pred             hhccCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHccC--CcEEEEEECCCCHHHHHHcCCCCCCEEE
Confidence            444554 789988864 678999999999999999999999999999987  69999999999988  789999999999


Q ss_pred             EEeCCCcccCce-------eccCCCC-HHHHHHHHHhcC
Q 013976          357 FFPAGNKSFDPI-------NVDVDRT-VVALYKFLKKNA  387 (432)
Q Consensus       357 ~~~~g~~~~~~~-------~y~g~~~-~~~l~~fi~~~~  387 (432)
                      +|++|+.+ ..-       ...|... .+.|.++|+.+.
T Consensus       101 fFk~G~~v-~vd~Gtgd~~k~vGa~~~k~~l~~~ie~~~  138 (160)
T 2av4_A          101 FFYRNKHM-MIDLGTGNNNKINWPMNNKQEFIDIVETIF  138 (160)
T ss_dssp             EEETTEEE-EEECSSSCCSCBCSCCCCHHHHHHHHHHHH
T ss_pred             EEECCEEE-EEecCCCCcCeEEeecCCHHHHHHHHHHHH
Confidence            99999764 001       4667665 899999998876

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=99.72  E-value=4.2e-17  Score=130.52  Aligned_cols=105  Identities=24%  Similarity=0.468  Sum_probs=94.3

Q ss_pred             CCceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceE
Q 013976          278 DGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTI  355 (432)
Q Consensus       278 ~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i  355 (432)
                      .+.|..++.++|++.+.+.+++++|+||++||++|+.+.|.|.++++.+.+  ++.|+.+|++.+..  ..++|.++|++
T Consensus        21 ~~~v~~l~~~~f~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pt~   98 (128)
T 2o8v_B           21 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTAPKYGIRGIPTL   98 (128)
T ss_dssp             CCCSEEECTTTHHHHTTTCSSEEEEEEECSSCHHHHHTHHHHHHHHHHTTT--TEEEEEEETTTCCTTSGGGTCCSSSEE
T ss_pred             ccccEecChhhHHHHHHhcCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcC--CeEEEEEECCCCHHHHHHcCCCccCEE
Confidence            456889999999987777789999999999999999999999999999986  69999999998876  68999999999


Q ss_pred             EEEeCCCcccCceeccCCCCHHHHHHHHHhcC
Q 013976          356 LFFPAGNKSFDPINVDVDRTVVALYKFLKKNA  387 (432)
Q Consensus       356 ~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  387 (432)
                      ++|++|+.+.   .+.|..+.+.|.+||++.+
T Consensus        99 ~~~~~G~~~~---~~~G~~~~~~l~~~l~~~l  127 (128)
T 2o8v_B           99 LLFKNGEVAA---TKVGALSKGQLKEFLDANL  127 (128)
T ss_dssp             EEEETTEEEE---EEESCCCHHHHHHHHHHHH
T ss_pred             EEEeCCEEEE---EEcCCCCHHHHHHHHHHhh
Confidence            9998887654   7889999999999998865

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=99.71  E-value=3.9e-17  Score=127.82  Aligned_cols=104  Identities=16%  Similarity=0.229  Sum_probs=89.4

Q ss_pred             CceEEEecccchhhhhcCCC--cEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCcccccCCCCCCceEE
Q 013976          279 GDVKIVVGNNFDEIVLDESK--DVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTIL  356 (432)
Q Consensus       279 ~~v~~l~~~~~~~~~~~~~~--~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~~~~~i~~~P~i~  356 (432)
                      +.+..++.++|.+.+.+.++  +++|.||++||++|+.+.|.+++||..+.+   +.|+++|++++ ..+++|.++||++
T Consensus         3 G~v~~it~~~f~~~v~~~~~~~~vvv~F~a~wc~~C~~~~p~l~~la~~~~~---v~f~kvd~d~~-~~~~~v~~~PT~~   78 (118)
T 3evi_A            3 GELREISGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFPE---TKFVKAIVNSC-IQHYHDNCLPTIF   78 (118)
T ss_dssp             CSCEECCGGGHHHHTTTCCTTCEEEEEEECTTSHHHHHHHHHHHHHHHHCTT---SEEEEEEGGGT-STTCCGGGCSEEE
T ss_pred             cceEEeCHHHHHHHHHhcCCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC---CEEEEEEhHHh-HHHCCCCCCCEEE
Confidence            45788899999998866554  899999999999999999999999999854   99999999886 5789999999999


Q ss_pred             EEeCCCcccCceeccC-------CCCHHHHHHHHHhcCCC
Q 013976          357 FFPAGNKSFDPINVDV-------DRTVVALYKFLKKNASI  389 (432)
Q Consensus       357 ~~~~g~~~~~~~~y~g-------~~~~~~l~~fi~~~~~~  389 (432)
                      +|++|+.+.   ++.|       ..+.+.|..+|.++.-.
T Consensus        79 ~fk~G~~v~---~~~G~~~~gg~~~~~~~le~~L~~~g~i  115 (118)
T 3evi_A           79 VYKNGQIEA---KFIGIIECGGINLKLEELEWKLAEVGAI  115 (118)
T ss_dssp             EEETTEEEE---EEESTTTTTCSSCCHHHHHHHHHTTTSC
T ss_pred             EEECCEEEE---EEeChhhhCCCCCCHHHHHHHHHHcCCc
Confidence            999998876   4444       35889999999887543

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=99.71  E-value=7.6e-17  Score=124.66  Aligned_cols=103  Identities=22%  Similarity=0.420  Sum_probs=93.0

Q ss_pred             CceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEE
Q 013976          279 GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTIL  356 (432)
Q Consensus       279 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~  356 (432)
                      +.|..+++++|++.+...+++++|.||++||++|+.+.|.|.+++..+.+  ++.|+.+|++.+..  ..+++.++|+++
T Consensus         2 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~v~~~Pt~~   79 (107)
T 2i4a_A            2 EHTLAVSDSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAG--KVTVAKVNIDDNPETPNAYQVRSIPTLM   79 (107)
T ss_dssp             CCEEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHHTT--SEEEEEEETTTCCHHHHHTTCCSSSEEE
T ss_pred             CceeecchhhhhHHHHhCCCEEEEEEECCCChhHHHHhHHHHHHHHHhCC--cEEEEEEECCCCHHHHHhcCCCccCEEE
Confidence            35888999999988777789999999999999999999999999999986  69999999998876  689999999999


Q ss_pred             EEeCCCcccCceeccCCCCHHHHHHHHHhc
Q 013976          357 FFPAGNKSFDPINVDVDRTVVALYKFLKKN  386 (432)
Q Consensus       357 ~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~  386 (432)
                      +|++|+.+.   .+.|..+.+.|.+||+++
T Consensus        80 ~~~~G~~~~---~~~G~~~~~~l~~~l~~~  106 (107)
T 2i4a_A           80 LVRDGKVID---KKVGALPKSQLKAWVESA  106 (107)
T ss_dssp             EEETTEEEE---EEESCCCHHHHHHHHHHT
T ss_pred             EEeCCEEEE---EecCCCCHHHHHHHHHhc
Confidence            998887654   688999999999999875

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=99.71  E-value=3e-18  Score=136.16  Aligned_cols=105  Identities=14%  Similarity=0.103  Sum_probs=94.8

Q ss_pred             ceEEEecccchhhhhcCCCcEEEEEeCCC--ChhhhhhHHHHHHHHHHhcCCCC-EEEEEEeCCCccc--ccCCCCCCce
Q 013976          280 DVKIVVGNNFDEIVLDESKDVLLEIYAPW--CGHCQAFEPTYNKLAKHLRGVDS-IVIAKMDGTTNEH--HRAKSDGFPT  354 (432)
Q Consensus       280 ~v~~l~~~~~~~~~~~~~~~~lv~f~~~~--c~~c~~~~~~~~~la~~~~~~~~-~~~~~id~~~~~~--~~~~i~~~P~  354 (432)
                      .+..++..+|++.+ ..++++||+||++|  |++|+.+.|++++|+..|.+  + +.|+++|+++|..  .+|+|.++||
T Consensus        18 g~~~~t~~~F~~~v-~~~~~vlVdF~a~~crCgpCk~iaPvleela~e~~g--~~v~~~KVdvDe~~~lA~~ygV~sIPT   94 (140)
T 2qgv_A           18 GWTPVSESRLDDWL-TQAPDGVVLLSSDPKRTPEVSDNPVMIGELLHEFPD--YTWQVAIADLEQSEAIGDRFGAFRFPA   94 (140)
T ss_dssp             TCEECCHHHHHHHH-HTCSSEEEEECCCTTTCTTTTHHHHHHHHHHTTCTT--SCCEEEECCHHHHHHHHHHHTCCSSSE
T ss_pred             CCccCCHHHHHHHH-hCCCCEEEEEeCCcccCCcHHHHHhHHHHHHHHcCC--CeEEEEEEECCCCHHHHHHcCCccCCE
Confidence            46789999999988 46789999999999  99999999999999999987  6 9999999999887  6899999999


Q ss_pred             EEEEeCCCcccCceeccCCCCHHHHHHHHHhcCCCC
Q 013976          355 ILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIP  390 (432)
Q Consensus       355 i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~  390 (432)
                      +++|++|+.+.   +..|..+.+.|.++|+++++.+
T Consensus        95 lilFk~G~~v~---~~~G~~~k~~l~~~i~~~l~~~  127 (140)
T 2qgv_A           95 TLVFTGGNYRG---VLNGIHPWAELINLMRGLVEPQ  127 (140)
T ss_dssp             EEEEETTEEEE---EEESCCCHHHHHHHHHHHHC--
T ss_pred             EEEEECCEEEE---EEecCCCHHHHHHHHHHHhcCC
Confidence            99999999886   8889999999999999988533

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=99.71  E-value=6.5e-17  Score=126.29  Aligned_cols=103  Identities=20%  Similarity=0.341  Sum_probs=93.2

Q ss_pred             eEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEEE
Q 013976          281 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFF  358 (432)
Q Consensus       281 v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~  358 (432)
                      +..++.++|++.+  .+++++|.||++||++|+.+.|.|.+++..+++  ++.|+.+|++.+..  .+++|.++|++++|
T Consensus         3 v~~l~~~~~~~~~--~~~~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~   78 (112)
T 2voc_A            3 IVKATDQSFSAET--SEGVVLADFWAPWCGPSKMIAPVLEELDQEMGD--KLKIVKIDVDENQETAGKYGVMSIPTLLVL   78 (112)
T ss_dssp             CEECCTTTHHHHH--SSSEEEEEEECTTBGGGGGHHHHHHHHHHHHTT--TCEEEEEETTTCCSHHHHTTCCSBSEEEEE
T ss_pred             eEEecHHHHHHHh--CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC--CcEEEEEECCCCHHHHHHcCCCcccEEEEE
Confidence            5678999999987  778999999999999999999999999999986  69999999998876  68999999999999


Q ss_pred             eCCCcccCceeccCCCCHHHHHHHHHhcCCCC
Q 013976          359 PAGNKSFDPINVDVDRTVVALYKFLKKNASIP  390 (432)
Q Consensus       359 ~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~  390 (432)
                      ++|+.+.   .+.|..+.+.|.+||.+++...
T Consensus        79 ~~G~~~~---~~~G~~~~~~l~~~l~~~~~~~  107 (112)
T 2voc_A           79 KDGEVVE---TSVGFKPKEALQELVNKHLLEH  107 (112)
T ss_dssp             ETTEEEE---EEESCCCHHHHHHHHHTTSCSC
T ss_pred             eCCEEEE---EEeCCCCHHHHHHHHHHHHHhh
Confidence            8887654   7899999999999999988654

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.71  E-value=2.5e-17  Score=132.83  Aligned_cols=110  Identities=33%  Similarity=0.562  Sum_probs=96.4

Q ss_pred             CCceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcC--CCCEEEEEEeCCCccc--ccCCCCCCc
Q 013976          278 DGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRG--VDSIVIAKMDGTTNEH--HRAKSDGFP  353 (432)
Q Consensus       278 ~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~--~~~~~~~~id~~~~~~--~~~~i~~~P  353 (432)
                      .+.+..++..+|++.+...++++||+||++||++|+.+.|.|.+++..+..  ..++.|+.+|++.+..  .+++|.++|
T Consensus         6 ~~~v~~l~~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~P   85 (133)
T 1x5d_A            6 SGDVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRGFP   85 (133)
T ss_dssp             CCSCEECCTTHHHHHTTTSSSEEEEEEECTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTTCCHHHHHHTCCSSS
T ss_pred             CCcCEEcCHhhHHHHHhcCCCeEEEEEECCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCCCHHHHHhCCCCeeC
Confidence            456899999999998877789999999999999999999999999999971  1269999999998876  689999999


Q ss_pred             eEEEEeCCCcccCceeccCCCCHHHHHHHHHhcCCCC
Q 013976          354 TILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIP  390 (432)
Q Consensus       354 ~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~  390 (432)
                      ++++|.+|+.+.   .|.|..+.+.|.+||.+++...
T Consensus        86 t~~~~~~g~~~~---~~~G~~~~~~l~~~l~~~~~~~  119 (133)
T 1x5d_A           86 TIKIFQKGESPV---DYDGGRTRSDIVSRALDLFSDN  119 (133)
T ss_dssp             EEEEEETTEEEE---EECSCCSHHHHHHHHHHHHHHH
T ss_pred             eEEEEeCCCceE---EecCCCCHHHHHHHHHHHhhcc
Confidence            999999886543   7999999999999999987543

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=99.70  E-value=4e-17  Score=127.16  Aligned_cols=104  Identities=31%  Similarity=0.612  Sum_probs=93.0

Q ss_pred             CceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCC-CCEEEEEEeCCCccc--ccCCCCCCceE
Q 013976          279 GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV-DSIVIAKMDGTTNEH--HRAKSDGFPTI  355 (432)
Q Consensus       279 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~-~~~~~~~id~~~~~~--~~~~i~~~P~i  355 (432)
                      +.+..++.++|++.+.  +++++|.||++||++|+.+.|.|.+++..+... ..+.++.+|++.+..  .+++|.++|++
T Consensus         5 ~~v~~l~~~~~~~~~~--~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~   82 (111)
T 3uvt_A            5 STVLALTENNFDDTIA--EGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGYPTL   82 (111)
T ss_dssp             CCSEECCTTTHHHHHH--SSEEEEEEECSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             CcceEcChhhHHHHhc--CCcEEEEEECCCChhHHHhhHHHHHHHHHhhccCCceEEEEEeccccHhHHHhcCCCcccEE
Confidence            4588999999999885  779999999999999999999999999987643 479999999998876  78999999999


Q ss_pred             EEEeCCCcccCceeccCCCCHHHHHHHHHhcC
Q 013976          356 LFFPAGNKSFDPINVDVDRTVVALYKFLKKNA  387 (432)
Q Consensus       356 ~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  387 (432)
                      ++|++|+.+.   .+.|..+.+.|.+||++++
T Consensus        83 ~~~~~g~~~~---~~~g~~~~~~l~~~l~~~a  111 (111)
T 3uvt_A           83 LLFRGGKKVS---EHSGGRDLDSLHRFVLSQA  111 (111)
T ss_dssp             EEEETTEEEE---EECSCCSHHHHHHHHHHHC
T ss_pred             EEEeCCcEEE---eccCCcCHHHHHHHHHhcC
Confidence            9999997654   8999999999999999864

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=99.70  E-value=7.7e-17  Score=125.80  Aligned_cols=105  Identities=24%  Similarity=0.459  Sum_probs=94.1

Q ss_pred             CceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEE
Q 013976          279 GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTIL  356 (432)
Q Consensus       279 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~  356 (432)
                      +.|..++..+|.+.+.+.+++++|.||++||++|+.+.|.|.+++..+.+  ++.++.+|++.+..  .++++.++|+++
T Consensus         5 ~~v~~l~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~v~~~Pt~~   82 (112)
T 1t00_A            5 GTLKHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGD--KIEIVKLNIDENPGTAAKYGVMSIPTLN   82 (112)
T ss_dssp             CCCEEECTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TCEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             ceEEecchhhHHHHHhhCCCeEEEEEECCCCHhHHhcCHHHHHHHHHhcC--CeEEEEEEcCCCHHHHHhCCCCcccEEE
Confidence            45788999999988877789999999999999999999999999999976  69999999998876  689999999999


Q ss_pred             EEeCCCcccCceeccCCCCHHHHHHHHHhcCC
Q 013976          357 FFPAGNKSFDPINVDVDRTVVALYKFLKKNAS  388 (432)
Q Consensus       357 ~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  388 (432)
                      +|++|+.+.   .+.|..+.+.|.+||++.+.
T Consensus        83 ~~~~G~~~~---~~~G~~~~~~l~~~l~~~l~  111 (112)
T 1t00_A           83 VYQGGEVAK---TIVGAKPKAAIVRDLEDFIA  111 (112)
T ss_dssp             EEETTEEEE---EEESCCCHHHHHHHTHHHHC
T ss_pred             EEeCCEEEE---EEeCCCCHHHHHHHHHHHhh
Confidence            999887654   78899999999999988753

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=99.70  E-value=1.5e-16  Score=128.91  Aligned_cols=112  Identities=24%  Similarity=0.403  Sum_probs=97.4

Q ss_pred             CCceEEEecccchhhhhc-----------CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--
Q 013976          278 DGDVKIVVGNNFDEIVLD-----------ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--  344 (432)
Q Consensus       278 ~~~v~~l~~~~~~~~~~~-----------~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--  344 (432)
                      +..|..|+..+|.+.+.+           .+++++|.||++||++|+.+.|.|.+++..+.+  ++.|+.+|++.+..  
T Consensus         8 ~~~v~~l~~~~f~~~v~~~~~~~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~l~~~~~~--~v~~~~vd~~~~~~l~   85 (136)
T 2l5l_A            8 NGKVIHLTKAEFLAKVYNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYDG--QIVIYKVDTEKEQELA   85 (136)
T ss_dssp             TTSEEEECHHHHHHHTBCTTTCSSSCCBCCSSCEEEEEECTTSHHHHHHHHHHHHHHHHTTT--TCEEEEEETTTCHHHH
T ss_pred             CCceEEecchHHHHHHHhhccCccceeecCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcC--CEEEEEEeCCCCHHHH
Confidence            456889999999998764           468999999999999999999999999999986  69999999998875  


Q ss_pred             ccCCCCCCceEEEE-eCCCcccCceeccCCCCHHHHHHHHHhcCCCCCcccC
Q 013976          345 HRAKSDGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNASIPFKIQK  395 (432)
Q Consensus       345 ~~~~i~~~P~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~~~~~~  395 (432)
                      .+++|.++|++++| ++|+.+    .+.|..+.+.|.+||+++.......+.
T Consensus        86 ~~~~v~~~Pt~~~~~~~G~~~----~~~G~~~~~~l~~~l~~~~~~~~~~~~  133 (136)
T 2l5l_A           86 GAFGIRSIPSILFIPMEGKPE----MAQGAMPKASFKKAIDEFLLKKEGHHH  133 (136)
T ss_dssp             HHTTCCSSCEEEEECSSSCCE----EEESCCCHHHHHHHHHHHHTSCTTSSC
T ss_pred             HHcCCCCCCEEEEECCCCcEE----EEeCCCCHHHHHHHHHHHhhccCCCCC
Confidence            68999999999999 666543    789999999999999999876655543

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=99.69  E-value=9.4e-17  Score=123.90  Aligned_cols=101  Identities=27%  Similarity=0.387  Sum_probs=92.0

Q ss_pred             ceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEE
Q 013976          280 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILF  357 (432)
Q Consensus       280 ~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~  357 (432)
                      .+..++.++|++.+  .+++++|.||++||++|+.+.|.|.++++.+.+  ++.|+.+|++.+..  ..+++.++|++++
T Consensus         4 ~v~~l~~~~~~~~~--~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~   79 (106)
T 3die_A            4 AIVKVTDADFDSKV--ESGVQLVDFWATACGPCKMIAPVLEELAADYEG--KADILKLDVDENPSTAAKYEVMSIPTLIV   79 (106)
T ss_dssp             CCEECCTTTHHHHS--CSSEEEEEEECSBCHHHHHHHHHHHHHHHHTTT--TCEEEEEETTTCHHHHHHTTCCSBSEEEE
T ss_pred             ceEECCHHHHHHHh--cCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcC--CcEEEEEECCcCHHHHHhCCCcccCEEEE
Confidence            47889999999988  789999999999999999999999999999987  59999999998876  6899999999999


Q ss_pred             EeCCCcccCceeccCCCCHHHHHHHHHhcC
Q 013976          358 FPAGNKSFDPINVDVDRTVVALYKFLKKNA  387 (432)
Q Consensus       358 ~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  387 (432)
                      |++|+.+.   .+.|..+.+.|.+||++++
T Consensus        80 ~~~G~~~~---~~~g~~~~~~l~~~l~~~l  106 (106)
T 3die_A           80 FKDGQPVD---KVVGFQPKENLAEVLDKHL  106 (106)
T ss_dssp             EETTEEEE---EEESCCCHHHHHHHHHTTC
T ss_pred             EeCCeEEE---EEeCCCCHHHHHHHHHHhC
Confidence            99887664   7899999999999998763

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.69  E-value=8.6e-17  Score=129.17  Aligned_cols=107  Identities=29%  Similarity=0.524  Sum_probs=95.8

Q ss_pred             CCceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceE
Q 013976          278 DGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTI  355 (432)
Q Consensus       278 ~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i  355 (432)
                      .+.+..|+.++|++.+.+.+++++|+||++||++|+.+.|.|.+++..+.+  .+.|+.+|++.+..  .+++|.++|++
T Consensus        16 ~~~v~~l~~~~f~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~l~~~~~v~~~Pt~   93 (130)
T 2dml_A           16 SDDVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKD--VVKVGAVNADKHQSLGGQYGVQGFPTI   93 (130)
T ss_dssp             TSSSEECCTTTHHHHTTTCSSCEEEEEECTTCSTTGGGHHHHHHHHHHTTT--TSEEEEEETTTCHHHHHHHTCCSSSEE
T ss_pred             CCCcEECCHHHHHHHHhcCCCeEEEEEECCCCHHHHhhCHHHHHHHHHhcC--ceEEEEEeCCCCHHHHHHcCCCccCEE
Confidence            567899999999998777789999999999999999999999999999987  59999999998876  68999999999


Q ss_pred             EEEeCCCcccCceeccCCCCHHHHHHHHHhcCC
Q 013976          356 LFFPAGNKSFDPINVDVDRTVVALYKFLKKNAS  388 (432)
Q Consensus       356 ~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  388 (432)
                      ++|.+|..  ....|.|..+.+.|.+||.+.+.
T Consensus        94 ~~~~~~~~--~~~~~~G~~~~~~l~~~l~~~l~  124 (130)
T 2dml_A           94 KIFGANKN--KPEDYQGGRTGEAIVDAALSALR  124 (130)
T ss_dssp             EEESSCTT--SCEECCSCCSHHHHHHHHHHHHH
T ss_pred             EEEeCCCC--eEEEeecCCCHHHHHHHHHHHHh
Confidence            99988875  24489999999999999998764

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=99.69  E-value=6e-17  Score=127.94  Aligned_cols=106  Identities=25%  Similarity=0.425  Sum_probs=95.0

Q ss_pred             CCCceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCce
Q 013976          277 NDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPT  354 (432)
Q Consensus       277 ~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~  354 (432)
                      ....+..++.++|++.+.+.+++++|+||++||++|+.+.|.|.+++..+.+  ++.|+.+|++.+..  .+++|.++|+
T Consensus        11 ~~~~~~~~~~~~f~~~v~~~~k~vlv~f~a~~C~~C~~~~~~l~~~~~~~~~--~v~~~~vd~d~~~~l~~~~~v~~~Pt   88 (119)
T 1w4v_A           11 GSTTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHG--KVVMAKVDIDDHTDLAIEYEVSAVPT   88 (119)
T ss_dssp             CCSEEECCSHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT--SSEEEEEETTTTHHHHHHTTCCSSSE
T ss_pred             CceEEEecChhhHHHHHHcCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcC--CeEEEEEeCCCCHHHHHHcCCCcccE
Confidence            3567899999999998877789999999999999999999999999999976  69999999998875  6899999999


Q ss_pred             EEEEeCCCcccCceeccCCCCHHHHHHHHHhcC
Q 013976          355 ILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA  387 (432)
Q Consensus       355 i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  387 (432)
                      +++|++|+.+.   .+.|..+.+.|.+||++.+
T Consensus        89 ~~~~~~G~~~~---~~~G~~~~~~l~~~l~~~l  118 (119)
T 1w4v_A           89 VLAMKNGDVVD---KFVGIKDEDQLEAFLKKLI  118 (119)
T ss_dssp             EEEEETTEEEE---EEESCCCHHHHHHHHHHHH
T ss_pred             EEEEeCCcEEE---EEcCCCCHHHHHHHHHHHh
Confidence            99998887654   7889899999999998764

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=99.69  E-value=4.9e-17  Score=132.41  Aligned_cols=107  Identities=22%  Similarity=0.333  Sum_probs=96.8

Q ss_pred             CCceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceE
Q 013976          278 DGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTI  355 (432)
Q Consensus       278 ~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i  355 (432)
                      ...+..++.++|.+.+.+.++++||+||++||++|+.+.|.|.+++..+.+  ++.|+.+|++.+..  .+++|.++|++
T Consensus         5 ~~~v~~l~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pt~   82 (140)
T 3hz4_A            5 GSSIIEFEDMTWSQQVEDSKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGS--SAVFGRINIATNPWTAEKYGVQGTPTF   82 (140)
T ss_dssp             TTTEEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT--TSEEEEEETTTCHHHHHHHTCCEESEE
T ss_pred             CcceEEcchHhHHHHHHhCCCcEEEEEECCCChhHHHHHHHHHHHHHHhCC--ceEEEEEECCcCHhHHHHCCCCcCCEE
Confidence            356899999999977778889999999999999999999999999999987  69999999998876  68999999999


Q ss_pred             EEEeCCCcccCceeccCCCCHHHHHHHHHhcCCC
Q 013976          356 LFFPAGNKSFDPINVDVDRTVVALYKFLKKNASI  389 (432)
Q Consensus       356 ~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~  389 (432)
                      ++|++|+.+.   .+.|..+.+.|.+||++.+..
T Consensus        83 ~~~~~G~~~~---~~~G~~~~~~l~~~l~~~l~~  113 (140)
T 3hz4_A           83 KFFCHGRPVW---EQVGQIYPSILKNAVRDMLQH  113 (140)
T ss_dssp             EEEETTEEEE---EEESSCCHHHHHHHHHHHHHH
T ss_pred             EEEeCCcEEE---EEcCCCCHHHHHHHHHHHhcc
Confidence            9999987654   789999999999999988753

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.69  E-value=9.5e-17  Score=124.51  Aligned_cols=104  Identities=25%  Similarity=0.477  Sum_probs=93.7

Q ss_pred             CCceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceE
Q 013976          278 DGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTI  355 (432)
Q Consensus       278 ~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i  355 (432)
                      .+.+..++.++|++.+ ..+++++|+||++||++|+.+.|.|.+++..+.+  ++.|+.+|++.+..  ..+++.++|++
T Consensus         3 ~~~v~~l~~~~~~~~~-~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~i~~~Pt~   79 (109)
T 3tco_A            3 EDVTLVLTEENFDEVI-RNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKG--KAVFGRLNVDENQKIADKYSVLNIPTT   79 (109)
T ss_dssp             CCCCEECCTTTHHHHH-HHSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TSEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             CCeEEEecHHHHHHHH-hcCCeEEEEEECCCCHHHHhhhHHHHHHHHHhCC--CceEEEEccccCHHHHHhcCcccCCEE
Confidence            3468889999999977 5589999999999999999999999999999987  69999999998876  68999999999


Q ss_pred             EEEeCCCcccCceeccCCCCHHHHHHHHHhcC
Q 013976          356 LFFPAGNKSFDPINVDVDRTVVALYKFLKKNA  387 (432)
Q Consensus       356 ~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  387 (432)
                      ++|++|+.+.   .+.|..+.+.|.++|++++
T Consensus        80 ~~~~~g~~~~---~~~g~~~~~~l~~~l~~~l  108 (109)
T 3tco_A           80 LIFVNGQLVD---SLVGAVDEDTLESTVNKYL  108 (109)
T ss_dssp             EEEETTEEEE---EEESCCCHHHHHHHHHHHC
T ss_pred             EEEcCCcEEE---eeeccCCHHHHHHHHHHHh
Confidence            9999887764   7899999999999999875

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=99.69  E-value=6.2e-16  Score=136.73  Aligned_cols=201  Identities=10%  Similarity=0.068  Sum_probs=156.8

Q ss_pred             eeCCHHHHHHHh-h--cCCeEEEEEecC-CCcc---hHHHHHHHhccCCCceEEEeC-----cHHHHhHcCCCCCCCCCe
Q 013976           50 NITTLDEAERVL-T--SETKVVLGYLNS-LVGS---ESEVLADASRLEDDVNFYQTT-----NPDVAKIFHLDSKVNRPA  117 (432)
Q Consensus        50 ~i~~~~~l~~~~-~--~~~~~vv~f~~~-~~~~---~~~~f~~~a~~~~~~~F~~~~-----~~~~~~~~~~~~~~~~p~  117 (432)
                      ...+.++++.++ .  .++++++.|+.+ .|++   ....+.++++..+.+.|+.++     ++++++.||+..   .|+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~v~lv~f~~~~~C~~C~~~~~~~~~la~~~~~v~~~~vd~~~~~~~~~~~~~~v~~---~Pt   81 (226)
T 1a8l_A            5 SDADKKVIKEEFFSKMVNPVKLIVFVRKDHCQYCDQLKQLVQELSELTDKLSYEIVDFDTPEGKELAKRYRIDR---APA   81 (226)
T ss_dssp             CHHHHHHHHHHTGGGCCSCEEEEEEECSSSCTTHHHHHHHHHHHHTTCTTEEEEEEETTSHHHHHHHHHTTCCS---SSE
T ss_pred             CHHHHHHHHHHHHHhcCCCeEEEEEecCCCCchhHHHHHHHHHHHhhCCceEEEEEeCCCcccHHHHHHcCCCc---Cce
Confidence            344567777777 3  356777888877 7765   455677777667789998854     678999999986   799


Q ss_pred             EEEEecCCCceecccCCCCCHHHHHHHHHhcCC--CceeecCCCchhhhccCCCcc-eEEEEEeC-cchhhhHHHHHHHH
Q 013976          118 LVMVKKETEKISYFADGKFDKSTIADFVFSNKL--PLVTIFTRENAPSVFESPIKN-QLLLFAVS-NDSEKLLPVFEEAA  193 (432)
Q Consensus       118 i~l~~~~~~~~~~y~~g~~~~~~l~~fi~~~~~--p~v~~l~~~~~~~~~~~~~~~-~i~~~~~~-~~~~~~~~~~~~~a  193 (432)
                      +++|+.+......| .|..+...+..|+.....  .....++.+++..+...+.++ ++.||++| ++|+.+.+.+.+++
T Consensus        82 ~~~~~~g~~~~~~~-~G~~~~~~l~~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~l~  160 (226)
T 1a8l_A           82 TTITQDGKDFGVRY-FGLPAGHEFAAFLEDIVDVSREETNLMDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFA  160 (226)
T ss_dssp             EEEEETTBCCSEEE-ESCCCTTHHHHHHHHHHHHHHTCCCCCHHHHHHHTTCCSCEEEEEEECSSCTTHHHHHHHHHHHH
T ss_pred             EEEEcCCceeeEEE-eccCcHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHhcCCCcEEEEEeCCCCCccHHHHHHHHHHH
Confidence            99998644334677 788888889999876431  234567777777776666677 88899999 99999999999999


Q ss_pred             Hhcc----CceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCceecCCCCCCHHHHHHHHHHHh
Q 013976          194 KSFK----GKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFL  260 (432)
Q Consensus       194 ~~~~----~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~  260 (432)
                      ..+.    +++.|+.+|++.   ++.+++.||+.+.  |+++++..+. ....+.|..+.+.|.+|+...+
T Consensus       161 ~~~~~~~~~~v~~~~vd~~~---~~~l~~~~~v~~~--Pt~~~~~~G~-~~~~~~G~~~~~~l~~~l~~~l  225 (226)
T 1a8l_A          161 IENTKAGKGKILGDMVEAIE---YPEWADQYNVMAV--PKIVIQVNGE-DRVEFEGAYPEKMFLEKLLSAL  225 (226)
T ss_dssp             HHHHHTTCCCEEEEEEEGGG---CHHHHHHTTCCSS--CEEEEEETTE-EEEEEESCCCHHHHHHHHHHHH
T ss_pred             HhcccccCCcEEEEEEEccc---CHHHHHhCCCccc--CeEEEEeCCc-eeEEEcCCCCHHHHHHHHHHhh
Confidence            9998    579999999987   5689999999998  9998886443 3456789999999999998865

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=99.69  E-value=9.1e-17  Score=126.92  Aligned_cols=111  Identities=34%  Similarity=0.665  Sum_probs=97.0

Q ss_pred             CCceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCC-CCEEEEEEeCCCccc--ccCCCCCCce
Q 013976          278 DGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV-DSIVIAKMDGTTNEH--HRAKSDGFPT  354 (432)
Q Consensus       278 ~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~-~~~~~~~id~~~~~~--~~~~i~~~P~  354 (432)
                      ++.|..++.++|++.+ ..+++++|+||++||++|+.+.|.|.+++..++.. .++.++.+|++.+..  .++++.++|+
T Consensus         6 ~~~v~~l~~~~~~~~~-~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt   84 (120)
T 1mek_A            6 EDHVLVLRKSNFAEAL-AAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPT   84 (120)
T ss_dssp             ETTEEECCTTTHHHHH-HHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSHHHHTCCSSSE
T ss_pred             CCCcEEechhhHHHHH-ccCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCCCHHHHHHCCCCcccE
Confidence            4568899999999876 56789999999999999999999999999998753 379999999998765  6899999999


Q ss_pred             EEEEeCCCcccCceeccCCCCHHHHHHHHHhcCCCC
Q 013976          355 ILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIP  390 (432)
Q Consensus       355 i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~  390 (432)
                      +++|++|+.+ .+..|.|..+.+.|.+||+++++..
T Consensus        85 ~~~~~~g~~~-~~~~~~g~~~~~~l~~~l~~~~~~~  119 (120)
T 1mek_A           85 IKFFRNGDTA-SPKEYTAGREADDIVNWLKKRTGPA  119 (120)
T ss_dssp             EEEEESSCSS-SCEECCCCSSHHHHHHHHHTTSCCC
T ss_pred             EEEEeCCCcC-CcccccCccCHHHHHHHHHhccCCC
Confidence            9999998865 3458999999999999999987653

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=99.69  E-value=1.3e-16  Score=125.02  Aligned_cols=105  Identities=22%  Similarity=0.392  Sum_probs=94.6

Q ss_pred             CceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEE
Q 013976          279 GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTIL  356 (432)
Q Consensus       279 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~  356 (432)
                      +.|..++.++|++.+...+++++|.||++||++|+.+.|.|.+++..+.+  ++.|+.+|++.+..  .++++.++|+++
T Consensus         7 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~--~v~~~~v~~~~~~~~~~~~~v~~~Pt~~   84 (115)
T 1thx_A            7 KGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSD--RLKVVKLEIDPNPTTVKKYKVEGVPALR   84 (115)
T ss_dssp             CSEEECCGGGHHHHTTTCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTT--TCEEEEEESTTCHHHHHHTTCCSSSEEE
T ss_pred             CceEEeeccchhhHhhcCCceEEEEEECCCCHHHHHhHHHHHHHHHHhCC--cEEEEEEEcCCCHHHHHHcCCCceeEEE
Confidence            45889999999998777789999999999999999999999999999986  59999999998876  689999999999


Q ss_pred             EEeCCCcccCceeccCCCCHHHHHHHHHhcCC
Q 013976          357 FFPAGNKSFDPINVDVDRTVVALYKFLKKNAS  388 (432)
Q Consensus       357 ~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  388 (432)
                      +|++|..+.   .+.|..+.+.|.+||++++.
T Consensus        85 ~~~~G~~~~---~~~g~~~~~~l~~~l~~~l~  113 (115)
T 1thx_A           85 LVKGEQILD---STEGVISKDKLLSFLDTHLN  113 (115)
T ss_dssp             EEETTEEEE---EEESCCCHHHHHHHHHHHHC
T ss_pred             EEcCCEEEE---EecCCCCHHHHHHHHHHHhc
Confidence            998887654   68899999999999998765

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.68  E-value=2.8e-16  Score=126.93  Aligned_cols=108  Identities=16%  Similarity=0.167  Sum_probs=91.8

Q ss_pred             CCceEEEecccchhhhhcCC--CcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCcccccCCCCCCceE
Q 013976          278 DGDVKIVVGNNFDEIVLDES--KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTI  355 (432)
Q Consensus       278 ~~~v~~l~~~~~~~~~~~~~--~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~~~~~i~~~P~i  355 (432)
                      .+.+..|+..+|.+.+...+  +++||.||++||++|+.+.|.|.+++..+.   ++.|+.+|++.+. .+++|.++||+
T Consensus         9 ~g~v~~i~~~~~~~~v~~~~~~~~vvv~f~a~wC~~C~~~~p~l~~la~~~~---~v~~~~vd~~~~~-~~~~i~~~Pt~   84 (135)
T 2dbc_A            9 FGELREISGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKFP---ETKFVKAIVNSCI-EHYHDNCLPTI   84 (135)
T ss_dssp             CCSCEECCHHHHHHHTTTCCSSCEEEEEECCTTCHHHHHHHHHHHHHHHHCS---SEEEEEECCSSSC-SSCCSSCCSEE
T ss_pred             CCceEEcCHHHHHHHHHhcCCCCEEEEEEECCCChHHHHHHHHHHHHHHHCC---CcEEEEEEhhcCc-ccCCCCCCCEE
Confidence            45688889999999886533  689999999999999999999999999985   4999999998875 78999999999


Q ss_pred             EEEeCCCcccCceeccCCC-------CHHHHHHHHHhcCCCCCc
Q 013976          356 LFFPAGNKSFDPINVDVDR-------TVVALYKFLKKNASIPFK  392 (432)
Q Consensus       356 ~~~~~g~~~~~~~~y~g~~-------~~~~l~~fi~~~~~~~~~  392 (432)
                      ++|++|+.+.   .+.|..       +.+.|.++|.++......
T Consensus        85 ~~~~~G~~v~---~~~G~~~~~~~~~~~~~l~~~l~~~~~i~~~  125 (135)
T 2dbc_A           85 FVYKNGQIEG---KFIGIIECGGINLKLEELEWKLSEVGAIQSD  125 (135)
T ss_dssp             EEESSSSCSE---EEESTTTTTCTTCCHHHHHHHHHHHTSSCCC
T ss_pred             EEEECCEEEE---EEEeEEeeCCCcCCHHHHHHHHHHcCCcccc
Confidence            9999998765   566643       789999999998765433

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=99.68  E-value=1.2e-16  Score=123.65  Aligned_cols=102  Identities=23%  Similarity=0.478  Sum_probs=91.9

Q ss_pred             eEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEEE
Q 013976          281 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFF  358 (432)
Q Consensus       281 v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~  358 (432)
                      |..++.++|++.+.+.+++++|.||++||++|+.+.|.|.+++..+++  ++.++.+|++.+..  ..+++.++|++++|
T Consensus         3 v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~   80 (107)
T 1dby_A            3 AGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKD--KLKCVKLNTDESPNVASEYGIRSIPTIMVF   80 (107)
T ss_dssp             CEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TCEEEEEETTTCHHHHHHHTCCSSCEEEEE
T ss_pred             cEeccHHHHHHHHhcCCCcEEEEEECCCCHhHHHHHHHHHHHHHHhCC--ceEEEEEECCCCHHHHHHCCCCcCCEEEEE
Confidence            678899999998877789999999999999999999999999999986  59999999998865  68999999999999


Q ss_pred             eCCCcccCceeccCCCCHHHHHHHHHhcC
Q 013976          359 PAGNKSFDPINVDVDRTVVALYKFLKKNA  387 (432)
Q Consensus       359 ~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  387 (432)
                      ++|+.+.   .+.|..+.+.|.++|++.+
T Consensus        81 ~~G~~~~---~~~G~~~~~~l~~~l~~~l  106 (107)
T 1dby_A           81 KGGKKCE---TIIGAVPKATIVQTVEKYL  106 (107)
T ss_dssp             SSSSEEE---EEESCCCHHHHHHHHHHHC
T ss_pred             eCCEEEE---EEeCCCCHHHHHHHHHHHh
Confidence            8887654   7889999999999999865

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=99.68  E-value=1.3e-16  Score=132.09  Aligned_cols=106  Identities=23%  Similarity=0.499  Sum_probs=95.3

Q ss_pred             CCceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceE
Q 013976          278 DGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTI  355 (432)
Q Consensus       278 ~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i  355 (432)
                      .+.+..++..+|++.+ ..+++++|+||++||++|+.+.|.|++++..+.+  ++.|+.+|++.+..  .+++|.++|++
T Consensus        46 ~~~~~~l~~~~f~~~~-~~~~~vlv~F~a~wC~~C~~~~p~l~~la~~~~~--~v~~~~vd~~~~~~l~~~~~i~~~Pt~  122 (155)
T 2ppt_A           46 TGKVAGIDPAILARAE-RDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAG--QVRLAKIDTQAHPAVAGRHRIQGIPAF  122 (155)
T ss_dssp             CSSEEECCHHHHHHHT-TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT--TCEEEEEETTTSTHHHHHTTCCSSSEE
T ss_pred             CCCCccCCHHHHHHHH-hCCCcEEEEEECCCCHHHHHHHHHHHHHHHHccC--CEEEEEEeCCccHHHHHHcCCCcCCEE
Confidence            5668889999999987 6778999999999999999999999999999987  59999999998876  68999999999


Q ss_pred             EEEeCCCcccCceeccCCCCHHHHHHHHHhcCCC
Q 013976          356 LFFPAGNKSFDPINVDVDRTVVALYKFLKKNASI  389 (432)
Q Consensus       356 ~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~  389 (432)
                      ++|++|+.+.   .+.|..+.+.|.+||+++++.
T Consensus       123 ~~~~~G~~~~---~~~G~~~~~~l~~~l~~~l~~  153 (155)
T 2ppt_A          123 ILFHKGRELA---RAAGARPASELVGFVRGKLGA  153 (155)
T ss_dssp             EEEETTEEEE---EEESCCCHHHHHHHHHHHHC-
T ss_pred             EEEeCCeEEE---EecCCCCHHHHHHHHHHHhcc
Confidence            9999887654   788999999999999998754

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=99.68  E-value=1.4e-16  Score=130.96  Aligned_cols=106  Identities=21%  Similarity=0.507  Sum_probs=96.6

Q ss_pred             CCceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceE
Q 013976          278 DGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTI  355 (432)
Q Consensus       278 ~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i  355 (432)
                      .+.+..+++.+|++.+ ..+++++|+||++||++|+.+.|.|.+++..+.+  ++.|+.+|++.+..  .+++|.++|++
T Consensus        37 ~~~v~~l~~~~~~~~~-~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~--~~~~~~vd~~~~~~l~~~~~v~~~Pt~  113 (148)
T 3p2a_A           37 DGEVINATAETLDKLL-QDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAG--KVRFVKVNTEAEPALSTRFRIRSIPTI  113 (148)
T ss_dssp             CCCCEECCTTTHHHHT-TCSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTT--TCEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             cCCceecCHHHHHHHH-hcCCcEEEEEECCCCHHHHHHHHHHHHHHHHcCC--ceEEEEEECcCCHHHHHHCCCCccCEE
Confidence            5678999999999987 7789999999999999999999999999999986  69999999998877  68999999999


Q ss_pred             EEEeCCCcccCceeccCCCCHHHHHHHHHhcCCC
Q 013976          356 LFFPAGNKSFDPINVDVDRTVVALYKFLKKNASI  389 (432)
Q Consensus       356 ~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~  389 (432)
                      ++|++|+.+.   .+.|..+.+.|.+||++++..
T Consensus       114 ~~~~~G~~~~---~~~G~~~~~~l~~~l~~~l~~  144 (148)
T 3p2a_A          114 MLYRNGKMID---MLNGAVPKAPFDNWLDEQLSR  144 (148)
T ss_dssp             EEEETTEEEE---EESSCCCHHHHHHHHHHHHHS
T ss_pred             EEEECCeEEE---EEeCCCCHHHHHHHHHHHhcc
Confidence            9999887764   799999999999999998764

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=99.68  E-value=1.3e-16  Score=126.36  Aligned_cols=106  Identities=25%  Similarity=0.443  Sum_probs=94.6

Q ss_pred             CCceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceE
Q 013976          278 DGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTI  355 (432)
Q Consensus       278 ~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i  355 (432)
                      .+.+..++..+|.+.+...+++++|.||++||++|+.+.|.|.+++..+.+  ++.|+.+|++.+..  .+++|.++|++
T Consensus        11 ~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~i~~~Pt~   88 (121)
T 2i1u_A           11 KSATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERAT--DLTVAKLDVDTNPETARNFQVVSIPTL   88 (121)
T ss_dssp             -CCSEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TCEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             cccceecCHHHHHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcC--CeEEEEEECCCCHHHHHhcCCCcCCEE
Confidence            456899999999988877789999999999999999999999999999976  69999999998876  68999999999


Q ss_pred             EEEeCCCcccCceeccCCCCHHHHHHHHHhcCC
Q 013976          356 LFFPAGNKSFDPINVDVDRTVVALYKFLKKNAS  388 (432)
Q Consensus       356 ~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  388 (432)
                      ++|++|+.+.   .+.|..+.+.|.+||++++.
T Consensus        89 ~~~~~g~~~~---~~~G~~~~~~l~~~l~~~l~  118 (121)
T 2i1u_A           89 ILFKDGQPVK---RIVGAKGKAALLRELSDVVP  118 (121)
T ss_dssp             EEEETTEEEE---EEESCCCHHHHHHHTCSCCC
T ss_pred             EEEECCEEEE---EecCCCCHHHHHHHHHHHHh
Confidence            9999887654   78999999999999988764

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=99.67  E-value=2.8e-16  Score=138.37  Aligned_cols=114  Identities=23%  Similarity=0.431  Sum_probs=101.1

Q ss_pred             CCCCCceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCC
Q 013976          275 ETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGF  352 (432)
Q Consensus       275 ~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~  352 (432)
                      ....+.+..++.++|++.+.+.+++++|.||++||++|+.+.|.|.+++..+++  ++.|+.+|++.+..  .+++|.++
T Consensus         8 ~~~~~~~~~lt~~~f~~~v~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~--~v~~~~vd~d~~~~l~~~~~v~~~   85 (222)
T 3dxb_A            8 HPMSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTAPKYGIRGI   85 (222)
T ss_dssp             -CCSCCCEECCTTTHHHHHTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TCEEEEEETTTCTTTGGGGTCCSB
T ss_pred             CCCCCCceeCCHHHHHHHHHhcCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcC--CcEEEEEECCCCHHHHHHcCCCcC
Confidence            334677999999999998778889999999999999999999999999999987  59999999999876  68999999


Q ss_pred             ceEEEEeCCCcccCceeccCCCCHHHHHHHHHhcCCCCCcc
Q 013976          353 PTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPFKI  393 (432)
Q Consensus       353 P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~~~~  393 (432)
                      |++++|++|+.+.   .+.|..+.+.|.+||++++......
T Consensus        86 Pt~~~~~~G~~~~---~~~G~~~~~~l~~~l~~~l~~~~~~  123 (222)
T 3dxb_A           86 PTLLLFKNGEVAA---TKVGALSKGQLKEFLDANLAGSAME  123 (222)
T ss_dssp             SEEEEEETTEEEE---EEESCCCHHHHHHHHHHHSCCSCCB
T ss_pred             CEEEEEECCeEEE---EeccccChHHHHHHHHhhccccccc
Confidence            9999999887654   7899999999999999998754433

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=99.67  E-value=2.1e-16  Score=121.72  Aligned_cols=102  Identities=26%  Similarity=0.524  Sum_probs=91.4

Q ss_pred             eEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEEE
Q 013976          281 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFF  358 (432)
Q Consensus       281 v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~  358 (432)
                      |..++.++|++.+...+++++|+||++||++|+.+.|.+.+++..+++  ++.++.+|++.+..  .++++.++|+++++
T Consensus         2 v~~~~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~   79 (105)
T 1fb6_A            2 VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSG--KIAVYKLNTDEAPGIATQYNIRSIPTVLFF   79 (105)
T ss_dssp             CEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TCEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred             ceechhhhHHHHHhcCCCcEEEEEECCCChHHHHHHHHHHHHHHHhcC--ceEEEEEcCcchHHHHHhCCCCcccEEEEE
Confidence            577899999998877789999999999999999999999999999987  59999999998865  68999999999999


Q ss_pred             eCCCcccCceeccCCCCHHHHHHHHHhcC
Q 013976          359 PAGNKSFDPINVDVDRTVVALYKFLKKNA  387 (432)
Q Consensus       359 ~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  387 (432)
                      ++|+.+.   .+.|..+.+.+.++|++++
T Consensus        80 ~~g~~~~---~~~G~~~~~~l~~~l~~~l  105 (105)
T 1fb6_A           80 KNGERKE---SIIGAVPKSTLTDSIEKYL  105 (105)
T ss_dssp             ETTEEEE---EEEECCCHHHHHHHHHHHC
T ss_pred             eCCeEEE---EEecCCCHHHHHHHHHhhC
Confidence            9887654   7889999999999998753

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=99.67  E-value=1.3e-16  Score=122.94  Aligned_cols=96  Identities=17%  Similarity=0.161  Sum_probs=78.0

Q ss_pred             ecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEEEeCCC
Q 013976          285 VGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGN  362 (432)
Q Consensus       285 ~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~~~g~  362 (432)
                      +.++|++.+ ..+++++|.||++||++|+.+.|.|.+++..+.   ++.|+.+|++.+..  .+++|.++|++++|++|+
T Consensus         7 ~~~~~~~~~-~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~---~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~   82 (105)
T 4euy_A            7 TIEELATYI-EEQQLVLLFIKTENCGVCDVMLRKVNYVLENYN---YVEKIEILLQDMQEIAGRYAVFTGPTVLLFYNGK   82 (105)
T ss_dssp             ---CCSSST-TCSSEEEEEEEESSCHHHHHHHHHHHHHHHTCT---TEEEEEEEECCC---------CCCCEEEEEETTE
T ss_pred             CHHHHHHHH-hcCCCEEEEEeCCCCcchHHHHHHHHHHHHHcC---CceEEEEECCCCHHHHHhcCCCCCCEEEEEeCCe
Confidence            457888876 667999999999999999999999999999884   59999999998876  689999999999999887


Q ss_pred             cccCceeccCCCCHHHHHHHHHhcC
Q 013976          363 KSFDPINVDVDRTVVALYKFLKKNA  387 (432)
Q Consensus       363 ~~~~~~~y~g~~~~~~l~~fi~~~~  387 (432)
                      .+.   ++.|..+.+.|.++|+++.
T Consensus        83 ~~~---~~~g~~~~~~l~~~l~~~~  104 (105)
T 4euy_A           83 EIL---RESRFISLENLERTIQLFE  104 (105)
T ss_dssp             EEE---EEESSCCHHHHHHHHHTTC
T ss_pred             EEE---EEeCCcCHHHHHHHHHHhh
Confidence            664   7889999999999999875

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=99.67  E-value=2.4e-16  Score=121.40  Aligned_cols=101  Identities=20%  Similarity=0.392  Sum_probs=89.4

Q ss_pred             eEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEEE
Q 013976          281 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFF  358 (432)
Q Consensus       281 v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~  358 (432)
                      |..++.++|++. ...+++++|.||++||++|+.+.|.|.+++..+.+  ++.++.+|++.+..  .++++.++|++++|
T Consensus         2 v~~l~~~~~~~~-~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~--~v~~~~v~~~~~~~~~~~~~v~~~Pt~~~~   78 (105)
T 1nsw_A            2 TMTLTDANFQQA-IQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHAD--KVTVAKLNVDENPETTSQFGIMSIPTLILF   78 (105)
T ss_dssp             CEEECTTTHHHH-HSSSSCEEEEEECTTCHHHHHHHHHHHHHHHHSTT--TCEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred             ceeccHHhHHHH-HhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcC--CcEEEEEECcCCHHHHHHcCCccccEEEEE
Confidence            578899999964 46678999999999999999999999999999986  59999999998876  68999999999999


Q ss_pred             eCCCcccCceeccCCCCHHHHHHHHHhcC
Q 013976          359 PAGNKSFDPINVDVDRTVVALYKFLKKNA  387 (432)
Q Consensus       359 ~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  387 (432)
                      ++|+.+.   .+.|..+.+.|.++|++.+
T Consensus        79 ~~G~~~~---~~~G~~~~~~l~~~l~~~l  104 (105)
T 1nsw_A           79 KGGRPVK---QLIGYQPKEQLEAQLADVL  104 (105)
T ss_dssp             ETTEEEE---EEESCCCHHHHHHHTTTTT
T ss_pred             eCCeEEE---EEecCCCHHHHHHHHHHHh
Confidence            8887654   7889999999999998764

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=99.67  E-value=1.1e-16  Score=127.05  Aligned_cols=104  Identities=25%  Similarity=0.506  Sum_probs=87.9

Q ss_pred             CceEEEecccchhhhhcCCCcEEEEEeCCCCh--------------hhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc
Q 013976          279 GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCG--------------HCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH  344 (432)
Q Consensus       279 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~--------------~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~  344 (432)
                      +.|..++..+|++.+...+++++|.||++||+              +|+.+.|.|.+++..+.+  ++.++.+|++.+..
T Consensus         3 ~~v~~l~~~~f~~~~~~~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~--~~~~~~vd~d~~~~   80 (123)
T 1oaz_A            3 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNPG   80 (123)
T ss_dssp             CSCEECCSTTHHHHTTSCSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC---------CEEEEEETTSCTT
T ss_pred             CccEecChhhHHHHHHhCCCeEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhcC--CeEEEEEECCCCHH
Confidence            34788999999987777889999999999999              999999999999999876  69999999998876


Q ss_pred             --ccCCCCCCceEEEEeCCCcccCceeccCCCCHHHHHHHHHhcC
Q 013976          345 --HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA  387 (432)
Q Consensus       345 --~~~~i~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  387 (432)
                        .+++|.++|++++|++|+.+.   .+.|..+.+.|.+||++++
T Consensus        81 l~~~~~v~~~Pt~~~~~~G~~~~---~~~G~~~~~~l~~~l~~~l  122 (123)
T 1oaz_A           81 TAPKYGIRGIPTLLLFKNGEVAA---TKVGALSKGQLKEFLDANL  122 (123)
T ss_dssp             TGGGGTCCBSSEEEEEESSSEEE---EEESCCCHHHHHHHHTTTC
T ss_pred             HHHHcCCCccCEEEEEECCEEEE---EEeCCCCHHHHHHHHHHHh
Confidence              689999999999999887664   7899999999999998865

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=99.67  E-value=2.5e-16  Score=128.42  Aligned_cols=107  Identities=21%  Similarity=0.366  Sum_probs=92.9

Q ss_pred             CCceEEEecccchhhhhc-----------CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--
Q 013976          278 DGDVKIVVGNNFDEIVLD-----------ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--  344 (432)
Q Consensus       278 ~~~v~~l~~~~~~~~~~~-----------~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--  344 (432)
                      .+.+..++..+|...+.+           .+++++|.||++||++|+.+.|.|.+++..+.+  ++.|+.+|++.+..  
T Consensus        21 ~~~v~~l~~~~f~~~l~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~   98 (141)
T 3hxs_A           21 QSGTIHLTRAEFLKKIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAG--KIYIYKVNVDKEPELA   98 (141)
T ss_dssp             --CCEECCHHHHHHHTCCCSSCCCCCCCCCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTT--TCEEEEEETTTCHHHH
T ss_pred             CCCcccccHHHHHHHhhccccchhHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcC--ceEEEEEECCCCHHHH
Confidence            567899999999998866           468999999999999999999999999999987  69999999998876  


Q ss_pred             ccCCCCCCceEEEEeCCCcccCceeccCCCCHHHHHHHHHhcCCC
Q 013976          345 HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASI  389 (432)
Q Consensus       345 ~~~~i~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~  389 (432)
                      ..++|.++|++++|..+..+   +.+.|..+.+.|.+||++++..
T Consensus        99 ~~~~v~~~Pt~~~~~~~g~~---~~~~G~~~~~~l~~~l~~~l~k  140 (141)
T 3hxs_A           99 RDFGIQSIPTIWFVPMKGEP---QVNMGALSKEQLKGYIDKVLLK  140 (141)
T ss_dssp             HHTTCCSSSEEEEECSSSCC---EEEESCCCHHHHHHHHHHTTC-
T ss_pred             HHcCCCCcCEEEEEeCCCCE---EEEeCCCCHHHHHHHHHHHHcc
Confidence            68999999999999555433   3899999999999999998753

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=99.67  E-value=2.5e-16  Score=122.11  Aligned_cols=104  Identities=24%  Similarity=0.444  Sum_probs=91.6

Q ss_pred             ceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEE
Q 013976          280 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILF  357 (432)
Q Consensus       280 ~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~  357 (432)
                      .|..++.++|++.+ ..+++++|+||++||++|+.+.|.|.+++..+.+  ++.++.+|++.+..  ..+++.++|++++
T Consensus         2 ~v~~l~~~~~~~~~-~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~   78 (109)
T 2yzu_A            2 KPIEVTDQNFDETL-GQHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEG--KLLVAKLDVDENPKTAMRYRVMSIPTVIL   78 (109)
T ss_dssp             CCEECCTTTHHHHH-HHCSEEEEEEECTTCHHHHHHHHHHHHHHHHTBT--TBEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred             cceEccHhHHHHHh-cCCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhC--ceEEEEEECCCCHhHHHhCCCCcCCEEEE
Confidence            47789999999654 6678999999999999999999999999999986  69999999998876  6899999999999


Q ss_pred             EeCCCcccCceeccCCCCHHHHHHHHHhcCCC
Q 013976          358 FPAGNKSFDPINVDVDRTVVALYKFLKKNASI  389 (432)
Q Consensus       358 ~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~  389 (432)
                      |++|+.+.   .+.|..+.+.|.+||++++..
T Consensus        79 ~~~g~~~~---~~~g~~~~~~l~~~l~~~l~~  107 (109)
T 2yzu_A           79 FKDGQPVE---VLVGAQPKRNYQAKIEKHLPA  107 (109)
T ss_dssp             EETTEEEE---EEESCCCHHHHHHHHHTTC--
T ss_pred             EeCCcEee---eEeCCCCHHHHHHHHHHHhhh
Confidence            98887653   788999999999999988753

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=99.67  E-value=1.4e-16  Score=126.45  Aligned_cols=105  Identities=21%  Similarity=0.481  Sum_probs=92.5

Q ss_pred             CceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEE
Q 013976          279 GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTIL  356 (432)
Q Consensus       279 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~  356 (432)
                      +.|..++.++|.+.+.+.+++++|.||++||++|+.+.|.|.+++..+.+  ++.|+.+|++.+..  .+++|.++|+++
T Consensus         3 ~~v~~l~~~~f~~~~~~~~~~~lv~f~a~~C~~C~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~   80 (122)
T 3aps_A            3 QASIDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKG--KVRAGKVDCQAYPQTCQKAGIKAYPSVK   80 (122)
T ss_dssp             CCSEECCHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT--TCEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             cchhcCCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC--CeEEEEEeCcCCHHHHHHcCCCccceEE
Confidence            45788999999877777789999999999999999999999999999987  69999999998876  689999999999


Q ss_pred             EEeCCCcccCceeccCC----CCHHHHHHHHHhcCC
Q 013976          357 FFPAGNKSFDPINVDVD----RTVVALYKFLKKNAS  388 (432)
Q Consensus       357 ~~~~g~~~~~~~~y~g~----~~~~~l~~fi~~~~~  388 (432)
                      +|.+|..+.   .+.|.    .+.+.|.+||++.+.
T Consensus        81 ~~~~~~~~~---~~~g~~~~~~~~~~l~~~l~~~l~  113 (122)
T 3aps_A           81 LYQYERAKK---SIWEEQINSRDAKTIAALIYGKLE  113 (122)
T ss_dssp             EEEEEGGGT---EEEEEEECCSCHHHHHHHHHHHHH
T ss_pred             EEeCCCccc---eeeccccCcCCHHHHHHHHHHHHH
Confidence            997776553   56664    899999999998875

>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A

Probab=99.66  E-value=2.6e-15  Score=132.62  Aligned_cols=204  Identities=15%  Similarity=0.092  Sum_probs=154.7

Q ss_pred             eeecCCCchhhhccCCCcceEEEEEeCcchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEE
Q 013976          153 VTIFTRENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAY  232 (432)
Q Consensus       153 v~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i  232 (432)
                      +...+.+++..++..+..++|-||.++  |....+.|.++|..+. .+.|+...      .+.++..+++++   |+|++
T Consensus        12 ~~l~s~~~~~~~l~~~~v~vVgff~~~--~~~~~~~f~~~A~~l~-~~~F~~t~------~~~v~~~~~v~~---p~i~l   79 (227)
T 4f9z_D           12 TWLTDVPAAMEFIAATEVAVIGFFQDL--EIPAVPILHSMVQKFP-GVSFGIST------DSEVLTHYNITG---NTICL   79 (227)
T ss_dssp             EECCSHHHHHHHHHTSSEEEEEECSCS--CSTHHHHHHHHTTTCT-TSEEEEEC------CHHHHHHTTCCS---SEEEE
T ss_pred             eeeCCHHHHHHHHhcCCeEEEEEecCC--CchhHHHHHHHHHhCC-CceEEEEC------CHHHHHHcCCCC---CeEEE
Confidence            333355677776666655666677664  7788899999999995 79998754      347899999963   88888


Q ss_pred             EeCCCCceecCC----CCCCHHHHHHHHHHHhcCCcCccccCCCCCCCCCCceEEEecccchhhhhcCCCcEEEEEeCCC
Q 013976          233 TGNDDAKKHILD----GELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPW  308 (432)
Q Consensus       233 ~~~~~~~~y~~~----~~~~~~~i~~fi~~~~~g~l~~~~~se~~p~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~  308 (432)
                      +......+..|.    |.++.+.|.+||....-                 +.|..++..++..++......++++|+.+|
T Consensus        80 fk~~~~~~~~~~~~~~g~~~~~~l~~fi~~~~~-----------------plv~e~t~~n~~~~~~~~~~~~~l~f~~~~  142 (227)
T 4f9z_D           80 FRLVDNEQLNLEDEDIESIDATKLSRFIEINSL-----------------HMVTEYNPVTVIGLFNSVIQIHLLLIMNKA  142 (227)
T ss_dssp             EETTTTEEEEECHHHHHTCCHHHHHHHHHHHCC-----------------CSEEECCHHHHHHHHHSSCCEEEEEEECTT
T ss_pred             EEecCcccccccccccCCCCHHHHHHHHHHhCC-----------------CceeecCcccHHHHhccCCceEEEEEEcCC
Confidence            876444445566    47899999999999642                 348889999999876444455667788999


Q ss_pred             ChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCC--ccc--ccCCCC--CCceEEEEeCCCcccCceec-cCCCCHHHHHH
Q 013976          309 CGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT--NEH--HRAKSD--GFPTILFFPAGNKSFDPINV-DVDRTVVALYK  381 (432)
Q Consensus       309 c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~--~~~--~~~~i~--~~P~i~~~~~g~~~~~~~~y-~g~~~~~~l~~  381 (432)
                      |.+|..+.+.|.++|+.+++  ++.|+.+|++.  +..  ..+++.  .+|+++++..+...  ...+ .+..+.+.|.+
T Consensus       143 ~~~~~~~~~~~~~vAk~~k~--~i~F~~vd~~~~~~~~~l~~fgl~~~~~P~~~i~~~~~~~--ky~~~~~~~t~~~i~~  218 (227)
T 4f9z_D          143 SPEYEENMHRYQKAAKLFQG--KILFILVDSGMKENGKVISFFKLKESQLPALAIYQTLDDE--WDTLPTAEVSVEHVQN  218 (227)
T ss_dssp             STTHHHHHHHHHHHHHHTTT--TCEEEEEETTSGGGHHHHHHTTCCGGGCSEEEEEESSSCC--EEEETTCCCCHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHhhC--CEEEEEeCCccHhHHHHHHHcCCCcccCCEEEEEECCCCc--cccCCcCCCCHHHHHH
Confidence            99999999999999999998  69999999975  322  578887  89999999755432  1123 36899999999


Q ss_pred             HHHhcCCC
Q 013976          382 FLKKNASI  389 (432)
Q Consensus       382 fi~~~~~~  389 (432)
                      ||++....
T Consensus       219 Fv~~~~~G  226 (227)
T 4f9z_D          219 FCDGFLSG  226 (227)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHhCC
Confidence            99987653

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=99.66  E-value=1.3e-16  Score=125.46  Aligned_cols=101  Identities=19%  Similarity=0.346  Sum_probs=88.3

Q ss_pred             ceEEEecccchhhhhc-CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEE
Q 013976          280 DVKIVVGNNFDEIVLD-ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTIL  356 (432)
Q Consensus       280 ~v~~l~~~~~~~~~~~-~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~  356 (432)
                      .+...+.++|++.+.+ .+++++|.||++||++|+.+.|.|.+++..+.+   +.|+.+|++.+..  .+++|.++|+++
T Consensus        13 ~~~~~t~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~---v~~~~vd~d~~~~l~~~~~v~~~Pt~~   89 (116)
T 3qfa_C           13 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSN---VIFLEVDVDDCQDVASECEVKSMPTFQ   89 (116)
T ss_dssp             CBCCCCHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHHHHHHTTCTT---SEEEEEETTTTHHHHHHTTCCSSSEEE
T ss_pred             ccCCCCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC---CEEEEEECCCCHHHHHHcCCccccEEE
Confidence            4556778999997753 679999999999999999999999999988865   9999999998876  689999999999


Q ss_pred             EEeCCCcccCceeccCCCCHHHHHHHHHhcC
Q 013976          357 FFPAGNKSFDPINVDVDRTVVALYKFLKKNA  387 (432)
Q Consensus       357 ~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  387 (432)
                      +|++|+.+.   .+.|. +.+.|.++|++++
T Consensus        90 ~~~~G~~~~---~~~G~-~~~~l~~~l~~~l  116 (116)
T 3qfa_C           90 FFKKGQKVG---EFSGA-NKEKLEATINELV  116 (116)
T ss_dssp             EESSSSEEE---EEESC-CHHHHHHHHHHHC
T ss_pred             EEeCCeEEE---EEcCC-CHHHHHHHHHHhC
Confidence            998887764   68888 9999999998763

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=99.65  E-value=5e-16  Score=120.97  Aligned_cols=103  Identities=24%  Similarity=0.386  Sum_probs=88.4

Q ss_pred             CCceEEEecccchhhhhc-CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCC-Cccc--ccCCCCCCc
Q 013976          278 DGDVKIVVGNNFDEIVLD-ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT-TNEH--HRAKSDGFP  353 (432)
Q Consensus       278 ~~~v~~l~~~~~~~~~~~-~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~-~~~~--~~~~i~~~P  353 (432)
                      .+.|..++.++|++.+.+ .+++++|.||++||++|+.+.|.|.+++..+.+   +.|+.+|++ .+..  .++++.++|
T Consensus         4 ~~~v~~l~~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~---v~~~~vd~~~~~~~~~~~~~v~~~P   80 (111)
T 2pu9_C            4 VGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLD---VIFLKLDCNQENKTLAKELGIRVVP   80 (111)
T ss_dssp             TTSEEEECTTTHHHHHTTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT---SEEEEEECSSTTHHHHHHHCCSBSS
T ss_pred             cCccEEechHHHHHHHHhcCCCEEEEEEECCcCHhHHHHCHHHHHHHHHCCC---eEEEEEecCcchHHHHHHcCCCeee
Confidence            567999999999998864 578999999999999999999999999999864   999999998 4433  689999999


Q ss_pred             eEEEEeCCCcccCceeccCCCCHHHHHHHHHhcC
Q 013976          354 TILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA  387 (432)
Q Consensus       354 ~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  387 (432)
                      +++++++|+.+.   .+.|. +.+.|.++|++..
T Consensus        81 t~~~~~~G~~~~---~~~G~-~~~~l~~~l~~~~  110 (111)
T 2pu9_C           81 TFKILKENSVVG---EVTGA-KYDKLLEAIQAAR  110 (111)
T ss_dssp             EEEEESSSSEEE---EEESS-CHHHHHHHHHHHH
T ss_pred             EEEEEeCCcEEE---EEcCC-CHHHHHHHHHHhh
Confidence            999999987654   67776 5899999998764

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.65  E-value=4.9e-16  Score=124.00  Aligned_cols=106  Identities=26%  Similarity=0.521  Sum_probs=91.7

Q ss_pred             CCceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceE
Q 013976          278 DGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTI  355 (432)
Q Consensus       278 ~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i  355 (432)
                      .+.|..|+.++|++.+ .  +.++|.||++||++|+.+.|.|.+++..+.+. ++.|+.+|++.+..  .+++|.++|++
T Consensus         6 ~~~v~~l~~~~f~~~~-~--~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~Pt~   81 (126)
T 1x5e_A            6 SGNVRVITDENWRELL-E--GDWMIEFYAPWCPACQNLQPEWESFAEWGEDL-EVNIAKVDVTEQPGLSGRFIINALPTI   81 (126)
T ss_dssp             CCSEEECCTTTHHHHT-S--SEEEEEEECSSCHHHHHHHHHHHHHHHHHGGG-TCEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             CCccEEecHHHHHHHh-C--CCEEEEEECCCCHHHHHHhHHHHHHHHHhccC-CeEEEEEECcCCHHHHHHcCCcccCEE
Confidence            4568999999999866 2  24999999999999999999999999998752 69999999998876  68999999999


Q ss_pred             EEEeCCCcccCceeccCCCCHHHHHHHHHhcCCCCC
Q 013976          356 LFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPF  391 (432)
Q Consensus       356 ~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~~  391 (432)
                      ++|++|+.    ..+.|..+.+.|.+||+++.....
T Consensus        82 ~~~~~G~~----~~~~G~~~~~~l~~~l~~~~~~~~  113 (126)
T 1x5e_A           82 YHCKDGEF----RRYQGPRTKKDFINFISDKEWKSI  113 (126)
T ss_dssp             EEEETTEE----EECCSCCCHHHHHHHHHTCGGGGS
T ss_pred             EEEeCCeE----EEeecCCCHHHHHHHHHHHhhccC
Confidence            99988863    289999999999999999875443

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C

Probab=99.64  E-value=1.5e-16  Score=140.48  Aligned_cols=133  Identities=17%  Similarity=0.226  Sum_probs=107.4

Q ss_pred             HHHHHHHhcCCcCccccCCCCCCCCCCceEEE-ecccchhhhhc--CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCC
Q 013976          253 KTFGEDFLEGKLKPFFKSDPIPETNDGDVKIV-VGNNFDEIVLD--ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV  329 (432)
Q Consensus       253 ~~fi~~~~~g~l~~~~~se~~p~~~~~~v~~l-~~~~~~~~~~~--~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~  329 (432)
                      ..|++.|..+++.+..++.+ +....+.|..| +..+|.+.+..  .++++||.||++||++|+.+.|.|.+||..+.+ 
T Consensus        87 e~fL~~~r~~Rl~el~~~~~-~~~~~G~V~ei~s~~~f~~~v~~~~~~k~VvV~Fya~wC~~Ck~l~p~l~~La~~~~~-  164 (245)
T 1a0r_P           87 ENCLRKYRRQCMQDMHQKLS-FGPRYGFVYELESGEQFLETIEKEQKITTIVVHIYEDGIKGCDALNSSLICLAAEYPM-  164 (245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC-CCCCCCSEEECCSHHHHHHHHHSSCTTCEEEEEEECTTSTTHHHHHHHHHHHHHHCTT-
T ss_pred             HHHHHHHHHHHHHHHHHHhh-ccCCCCeEEEeCCHHHHHHHHHHhcCCCEEEEEEECCCChHHHHHHHHHHHHHHHCCC-
Confidence            46899999999888776643 33456788889 68999998864  368999999999999999999999999999864 


Q ss_pred             CCEEEEEEeCCCccc-ccCCCCCCceEEEEeCCCcccCceecc---C-CCCHHHHHHHHHhcCCC
Q 013976          330 DSIVIAKMDGTTNEH-HRAKSDGFPTILFFPAGNKSFDPINVD---V-DRTVVALYKFLKKNASI  389 (432)
Q Consensus       330 ~~~~~~~id~~~~~~-~~~~i~~~P~i~~~~~g~~~~~~~~y~---g-~~~~~~l~~fi~~~~~~  389 (432)
                        +.|+.||++.... ..|+|.++||+++|++|..+.+.+.+.   | ..+.+.|..||.++...
T Consensus       165 --v~f~kVd~d~~~l~~~~~I~~~PTll~~~~G~~v~~~vG~~~~~g~~~~~e~Le~~L~~~g~l  227 (245)
T 1a0r_P          165 --VKFCKIKASNTGAGDRFSSDVLPTLLVYKGGELLSNFISVTEQLAEEFFTGDVESFLNEYGLL  227 (245)
T ss_dssp             --SEEEEEEHHHHCCTTSSCTTTCSEEEEEETTEEEEEETTGGGGSCTTCCHHHHHHHHHTTTCS
T ss_pred             --CEEEEEeCCcHHHHHHCCCCCCCEEEEEECCEEEEEEeCCcccccccccHHHHHHHHHHcCCC
Confidence              9999999977444 689999999999999997764333332   2 25788999999998754

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6

Probab=99.64  E-value=7.1e-17  Score=140.85  Aligned_cols=131  Identities=18%  Similarity=0.245  Sum_probs=107.0

Q ss_pred             HHHHHHHHHhcCCcCccccCCCCCCCCCCceEEE-ecccchhhhhcCC--CcEEEEEeCCCChhhhhhHHHHHHHHHHhc
Q 013976          251 KIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIV-VGNNFDEIVLDES--KDVLLEIYAPWCGHCQAFEPTYNKLAKHLR  327 (432)
Q Consensus       251 ~i~~fi~~~~~g~l~~~~~se~~p~~~~~~v~~l-~~~~~~~~~~~~~--~~~lv~f~~~~c~~c~~~~~~~~~la~~~~  327 (432)
                      +...|++.|..+++.+..++.. +....+.|..+ +..+|.+.+.+.+  +++||.||++||++|+.+.|.|.+++..+.
T Consensus        72 ~d~~fl~~~r~~Rl~el~~~~~-~~~~~g~v~~i~~~~~f~~~v~~~~~~k~vvV~F~a~wC~~C~~l~p~l~~la~~~~  150 (217)
T 2trc_P           72 EDEGCLRKYRRQCMQDMHQKLS-FGPRYGFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYP  150 (217)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHC-CCCCCCSEEECCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTCT
T ss_pred             ccHHHHHHHHHHHHHHHHHHHH-hccCCCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCccHHHHHHHHHHHHHHCC
Confidence            3467999999999977665543 33446778888 8899999886554  899999999999999999999999999885


Q ss_pred             CCCCEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCcccCceeccCCCC-------HHHHHHHHHhcCCC
Q 013976          328 GVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRT-------VVALYKFLKKNASI  389 (432)
Q Consensus       328 ~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~~~g~~~~~~~~y~g~~~-------~~~l~~fi~~~~~~  389 (432)
                         .+.|+.||++ +..  ..++|.++||+++|++|..+.   .+.|..+       .+.|..||.++...
T Consensus       151 ---~v~f~~vd~~-~~~l~~~~~i~~~PTl~~~~~G~~v~---~~~G~~~~~g~~~~~~~Le~~L~~~g~l  214 (217)
T 2trc_P          151 ---MVKFCKIRAS-NTGAGDRFSSDVLPTLLVYKGGELIS---NFISVAEQFAEDFFAADVESFLNEYGLL  214 (217)
T ss_dssp             ---TSEEEEEEHH-HHTCSTTSCGGGCSEEEEEETTEEEE---EETTGGGGSCSSCCHHHHHHHHHTTTCS
T ss_pred             ---CeEEEEEECC-cHHHHHHCCCCCCCEEEEEECCEEEE---EEeCCcccCcccCCHHHHHHHHHHcCCC
Confidence               5999999998 433  689999999999999987654   6666544       59999999988653

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=99.64  E-value=6e-16  Score=118.73  Aligned_cols=101  Identities=20%  Similarity=0.366  Sum_probs=89.9

Q ss_pred             eEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEEE
Q 013976          281 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFF  358 (432)
Q Consensus       281 v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~  358 (432)
                      |..++.++|++.+ ..+++++|+||++||++|+.+.+.+.+++..+.+   +.++.+|++.+..  ..+++.++|++++|
T Consensus         1 V~~l~~~~~~~~~-~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~   76 (104)
T 2e0q_A            1 VIHLDSKNFDSFL-ASHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQ---VGFGKLNSDENPDIAARYGVMSLPTVIFF   76 (104)
T ss_dssp             CEECCTTTHHHHH-HHSSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT---SEEEEEETTTCHHHHHHTTCCSSCEEEEE
T ss_pred             CeecCHHHHHHHH-hcCCcEEEEEECCCChhHHHHhHHHHHHHHHcCC---ceEEEEECCCCHHHHHhCCccccCEEEEE
Confidence            4578899999987 6678999999999999999999999999999875   9999999998876  68999999999999


Q ss_pred             eCCCcccCceeccCCCCHHHHHHHHHhcCC
Q 013976          359 PAGNKSFDPINVDVDRTVVALYKFLKKNAS  388 (432)
Q Consensus       359 ~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  388 (432)
                      ++|+.+.   .+.|..+.+.|.+||+++++
T Consensus        77 ~~g~~~~---~~~g~~~~~~l~~~l~~~l~  103 (104)
T 2e0q_A           77 KDGEPVD---EIIGAVPREEIEIRIKNLLG  103 (104)
T ss_dssp             ETTEEEE---EEESCCCHHHHHHHHHHHHT
T ss_pred             ECCeEhh---hccCCCCHHHHHHHHHHHhc
Confidence            8887654   78899999999999998754

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=99.64  E-value=9.8e-16  Score=118.45  Aligned_cols=100  Identities=18%  Similarity=0.272  Sum_probs=84.7

Q ss_pred             eEEE-ecccchhhhhc-CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEE
Q 013976          281 VKIV-VGNNFDEIVLD-ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTIL  356 (432)
Q Consensus       281 v~~l-~~~~~~~~~~~-~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~  356 (432)
                      +..+ +.++|++.+.+ .+++++|.||++||++|+.+.|.|.+++..+.   ++.|+.+|++.+..  .++++.++|+++
T Consensus         3 v~~i~~~~~~~~~~~~~~~~~v~v~f~a~wC~~C~~~~~~~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~v~~~Pt~~   79 (107)
T 1gh2_A            3 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP---QAVFLEVDVHQCQGTAATNNISATPTFQ   79 (107)
T ss_dssp             EEEECSGGGHHHHHHHTTTSCEEEEEECSSCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTSHHHHHHTTCCSSSEEE
T ss_pred             eEEecCHHHHHHHHHhCCCCEEEEEEECCCChhhHHHHHHHHHHHHHCC---CcEEEEEECccCHHHHHhcCCCcccEEE
Confidence            4455 45889987754 67899999999999999999999999999983   59999999998876  689999999999


Q ss_pred             EEeCCCcccCceeccCCCCHHHHHHHHHhcC
Q 013976          357 FFPAGNKSFDPINVDVDRTVVALYKFLKKNA  387 (432)
Q Consensus       357 ~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  387 (432)
                      +|++|+.+.   .+.| .+.+.|.+||++++
T Consensus        80 ~~~~G~~~~---~~~G-~~~~~l~~~l~~~l  106 (107)
T 1gh2_A           80 FFRNKVRID---QYQG-ADAVGLEEKIKQHL  106 (107)
T ss_dssp             EEETTEEEE---EEES-SCHHHHHHHHHHHH
T ss_pred             EEECCeEEE---EEeC-CCHHHHHHHHHHhc
Confidence            999987664   6778 45566999998865

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=99.63  E-value=7.9e-16  Score=125.23  Aligned_cols=105  Identities=21%  Similarity=0.332  Sum_probs=79.8

Q ss_pred             CceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEE
Q 013976          279 GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTIL  356 (432)
Q Consensus       279 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~  356 (432)
                      +.+..++.++|.+.+.+.++ ++|.||++||++|+.+.|.|.+++..+.+  ++.|+.+|++.+..  ..+++.++|+++
T Consensus        33 ~~v~~l~~~~~~~~~~~~~~-vvv~f~~~~C~~C~~~~~~l~~l~~~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pt~~  109 (140)
T 1v98_A           33 PWVVEADEKGFAQEVAGAPL-TLVDFFAPWCGPCRLVSPILEELARDHAG--RLKVVKVNVDEHPGLAARYGVRSVPTLV  109 (140)
T ss_dssp             ----------------CCCE-EEEEEECTTCHHHHHHHHHHHHHHHHTTT--TEEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             CccccCCHHHHHHHHHcCCC-EEEEEECCCCHHHHHHHHHHHHHHHHccC--ceEEEEEECCCCHHHHHHCCCCccCEEE
Confidence            56788999999998866666 99999999999999999999999999986  69999999998876  689999999999


Q ss_pred             EEeCCCcccCceeccCCCCHHHHHHHHHhcCCC
Q 013976          357 FFPAGNKSFDPINVDVDRTVVALYKFLKKNASI  389 (432)
Q Consensus       357 ~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~  389 (432)
                      +|++|..+.   .+.|..+.+.|.+||+++++.
T Consensus       110 ~~~~G~~~~---~~~G~~~~~~l~~~i~~~l~~  139 (140)
T 1v98_A          110 LFRRGAPVA---TWVGASPRRVLEERLRPYLEG  139 (140)
T ss_dssp             EEETTEEEE---EEESCCCHHHHHHHHHHHHTC
T ss_pred             EEeCCcEEE---EEeCCCCHHHHHHHHHHHHcc
Confidence            999887654   788999999999999987653

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=99.63  E-value=1e-15  Score=121.74  Aligned_cols=102  Identities=23%  Similarity=0.315  Sum_probs=90.1

Q ss_pred             CceEEEec-ccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceE
Q 013976          279 GDVKIVVG-NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTI  355 (432)
Q Consensus       279 ~~v~~l~~-~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i  355 (432)
                      .-+..|+. ++|++.+ ..+++++|.||++||++|+.+.|.|.+++..+.   ++.|+.+|++.+..  ..++|.++|++
T Consensus        19 ~mv~~l~~~~~f~~~~-~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~---~v~~~~vd~d~~~~l~~~~~v~~~Pt~   94 (125)
T 1r26_A           19 PSVVDVYSVEQFRNIM-SEDILTVAWFTAVWCGPCKTIERPMEKIAYEFP---TVKFAKVDADNNSEIVSKCRVLQLPTF   94 (125)
T ss_dssp             SCCEEECCHHHHHHHH-HSSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT---TSEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             cceEECCCHHHHHHHH-ccCCEEEEEEECCcCHhHHHHHHHHHHHHHHCC---CCEEEEEECCCCHHHHHHcCCCcccEE
Confidence            34889999 9999987 778999999999999999999999999999984   59999999998876  68999999999


Q ss_pred             EEEeCCCcccCceeccCCCCHHHHHHHHHhcCC
Q 013976          356 LFFPAGNKSFDPINVDVDRTVVALYKFLKKNAS  388 (432)
Q Consensus       356 ~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  388 (432)
                      ++|++|..+.   .+.| .+.+.|.++|++.+.
T Consensus        95 ~i~~~G~~~~---~~~G-~~~~~l~~~l~~~l~  123 (125)
T 1r26_A           95 IIARSGKMLG---HVIG-ANPGMLRQKLRDIIK  123 (125)
T ss_dssp             EEEETTEEEE---EEES-SCHHHHHHHHHHHHH
T ss_pred             EEEeCCeEEE---EEeC-CCHHHHHHHHHHHhc
Confidence            9999887654   6788 788999999988753

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=99.63  E-value=1.2e-15  Score=117.51  Aligned_cols=101  Identities=25%  Similarity=0.440  Sum_probs=87.7

Q ss_pred             eEEEec-ccchhhhhc-CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEE
Q 013976          281 VKIVVG-NNFDEIVLD-ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTIL  356 (432)
Q Consensus       281 v~~l~~-~~~~~~~~~-~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~  356 (432)
                      |..++. ++|++.+.+ .+++++|.||++||++|+.+.|.|.+++..++.  ++.++.+|++.+..  .++++.++|+++
T Consensus         2 v~~l~~~~~~~~~l~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~v~~~Pt~~   79 (106)
T 1xwb_A            2 VYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFAD--NVVVLKVDVDECEDIAMEYNISSMPTFV   79 (106)
T ss_dssp             EEECCSHHHHHHHHHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TEEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             ceecCCHHHHHHHHHhcCCCEEEEEEECCcCHHHHHhhHHHHHHHHHhCC--CeEEEEEeccchHHHHHHcCCCcccEEE
Confidence            456677 889887754 678999999999999999999999999999975  69999999998876  689999999999


Q ss_pred             EEeCCCcccCceeccCCCCHHHHHHHHHhcC
Q 013976          357 FFPAGNKSFDPINVDVDRTVVALYKFLKKNA  387 (432)
Q Consensus       357 ~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  387 (432)
                      +|++|+.+.   .+.| .+.+.|.+||++++
T Consensus        80 ~~~~G~~~~---~~~g-~~~~~l~~~i~~~l  106 (106)
T 1xwb_A           80 FLKNGVKVE---EFAG-ANAKRLEDVIKANI  106 (106)
T ss_dssp             EEETTEEEE---EEES-CCHHHHHHHHHHTC
T ss_pred             EEcCCcEEE---EEcC-CCHHHHHHHHHHhC
Confidence            999887654   6788 78999999998763

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=99.63  E-value=7.9e-16  Score=119.41  Aligned_cols=100  Identities=23%  Similarity=0.460  Sum_probs=86.3

Q ss_pred             ceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEE
Q 013976          280 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILF  357 (432)
Q Consensus       280 ~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~  357 (432)
                      .....+..+|++.+ ..+++++|.||++||++|+.+.|.|.+++..+.+   +.|+.+|++.+..  .+++|.++|++++
T Consensus         8 ~~~~~~~~~f~~~~-~~~k~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~---~~~~~vd~~~~~~l~~~~~v~~~Pt~~~   83 (109)
T 3f3q_A            8 VTQFKTASEFDSAI-AQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQ---ADFYKLDVDELGDVAQKNEVSAMPTLLL   83 (109)
T ss_dssp             CEECCSHHHHHHHT-TSSSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT---SEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred             ccCCCCHHHHHHHH-hcCCEEEEEEECCcCHhHHHHHHHHHHHHHHCCC---CEEEEEECCCCHHHHHHcCCCccCEEEE
Confidence            34556678998876 5689999999999999999999999999999865   8999999998876  6899999999999


Q ss_pred             EeCCCcccCceeccCCCCHHHHHHHHHhcC
Q 013976          358 FPAGNKSFDPINVDVDRTVVALYKFLKKNA  387 (432)
Q Consensus       358 ~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  387 (432)
                      |.+|+.+.   .+.|. +.+.|.++|++++
T Consensus        84 ~~~G~~~~---~~~G~-~~~~l~~~i~~~l  109 (109)
T 3f3q_A           84 FKNGKEVA---KVVGA-NPAAIKQAIAANA  109 (109)
T ss_dssp             EETTEEEE---EEESS-CHHHHHHHHHHHC
T ss_pred             EECCEEEE---EEeCC-CHHHHHHHHHhhC
Confidence            99887664   67776 7799999998864

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.62  E-value=9.5e-16  Score=133.83  Aligned_cols=108  Identities=20%  Similarity=0.468  Sum_probs=96.6

Q ss_pred             CCceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceE
Q 013976          278 DGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTI  355 (432)
Q Consensus       278 ~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i  355 (432)
                      +..+..+++.+|+..+ ..++++||.||++||++|+.+.|.|.+++..+.+  .+.|+.+|++.+..  ..++|.++|++
T Consensus        96 ~~~v~~l~~~~f~~~~-~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pt~  172 (210)
T 3apq_A           96 DPEIITLERREFDAAV-NSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDG--LLRIGAVNCGDDRMLCRMKGVNSYPSL  172 (210)
T ss_dssp             CTTSEECCHHHHHHHH-HHSCCEEEEEECTTCHHHHHHHHHHHHHHHHTBT--TBEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             CCceEEecHHHHHHHH-ccCCcEEEEEeCCCChhHHHHHHHHHHHHHHhcC--ceEEEEEECCccHHHHHHcCCCcCCeE
Confidence            4568899999999987 6678999999999999999999999999999987  69999999998876  68999999999


Q ss_pred             EEEeCCCcccCceeccCCCCHHHHHHHHHhcCCCCC
Q 013976          356 LFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPF  391 (432)
Q Consensus       356 ~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~~  391 (432)
                      ++|++|..+.   .+.|..+.+.|.+||.+++....
T Consensus       173 ~~~~~G~~~~---~~~G~~~~~~l~~~i~~~l~~~~  205 (210)
T 3apq_A          173 FIFRSGMAAV---KYNGDRSKESLVAFAMQHVRSTV  205 (210)
T ss_dssp             EEECTTSCCE---ECCSCCCHHHHHHHHHHHHHCCS
T ss_pred             EEEECCCcee---EecCCCCHHHHHHHHHHhCcccc
Confidence            9998887654   89999999999999999876544

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.62  E-value=1.3e-15  Score=139.86  Aligned_cols=105  Identities=17%  Similarity=0.313  Sum_probs=94.7

Q ss_pred             CCceEEEecccchhhhhc-CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCce
Q 013976          278 DGDVKIVVGNNFDEIVLD-ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPT  354 (432)
Q Consensus       278 ~~~v~~l~~~~~~~~~~~-~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~  354 (432)
                      .+.|..++..+|++.+.. .+++++|.||++||++|+.+.|.|.++++.+.+  ++.|+.||++.+..  ..++|.++||
T Consensus         6 ~~~v~~~~~~~f~~~~~~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt   83 (287)
T 3qou_A            6 VENIVNINESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNG--QFILAKLDCDAEQMIAAQFGLRAIPT   83 (287)
T ss_dssp             CTTEEECCTTTHHHHHTTTTTSCEEEEEECTTCTTTTTTHHHHHHHHHHHTS--SSEEEEEETTTCHHHHHTTTCCSSSE
T ss_pred             CCccEECCHHHHHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHcCC--CeEEEEEeCccCHHHHHHcCCCCCCe
Confidence            456899999999997643 268999999999999999999999999999987  69999999998876  7899999999


Q ss_pred             EEEEeCCCcccCceeccCCCCHHHHHHHHHhcC
Q 013976          355 ILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA  387 (432)
Q Consensus       355 i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  387 (432)
                      +++|++|+.+.   .+.|..+.+.+..||.++.
T Consensus        84 ~~~~~~G~~~~---~~~g~~~~~~l~~~l~~~l  113 (287)
T 3qou_A           84 VYLFQNGQPVD---GFQGPQPEEAIRALLDXVL  113 (287)
T ss_dssp             EEEEETTEEEE---EEESCCCHHHHHHHHHHHS
T ss_pred             EEEEECCEEEE---EeeCCCCHHHHHHHHHHHc
Confidence            99999987664   7899999999999999986

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=99.62  E-value=9.4e-16  Score=125.93  Aligned_cols=99  Identities=13%  Similarity=0.102  Sum_probs=88.0

Q ss_pred             Eecccchhhhh-cCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEEEeC
Q 013976          284 VVGNNFDEIVL-DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPA  360 (432)
Q Consensus       284 l~~~~~~~~~~-~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~~~  360 (432)
                      .+.++|++.+. ..++++||.|||+||++|+.+.|.|.+++..+.+  .+.|+.+|++++..  ..++|.++|+++++++
T Consensus         9 ~~~~~~~~~i~~~~~k~vlv~F~a~WC~~C~~~~p~l~~l~~~~~~--~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~   86 (149)
T 3gix_A            9 TSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSK--MAAIYLVDVDQTAVYTQYFDISYIPSTVFFFN   86 (149)
T ss_dssp             CSHHHHHHHHHHCCSSEEEEEEECTTSHHHHHHHHHHHHHHTTTTT--TEEEEEEETTTCCHHHHHTTCCSSSEEEEEET
T ss_pred             CCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHccC--ceEEEEEECCcCHHHHHHcCCCccCeEEEEEC
Confidence            35678998886 5679999999999999999999999999999876  59999999998877  6899999999999999


Q ss_pred             CCcc---------cCceeccC-CCCHHHHHHHHHhcC
Q 013976          361 GNKS---------FDPINVDV-DRTVVALYKFLKKNA  387 (432)
Q Consensus       361 g~~~---------~~~~~y~g-~~~~~~l~~fi~~~~  387 (432)
                      |+.+         .   .+.| ..+.+.|.++|++..
T Consensus        87 G~~v~~~~g~~~~~---~~~G~~~~~~~l~~~l~~~~  120 (149)
T 3gix_A           87 GQHMKVDYGSPDHT---KFVGSFKTKQDFIDLIEVIY  120 (149)
T ss_dssp             TEEEEEECSSSCCS---CEESCCSSHHHHHHHHHHHH
T ss_pred             CeEEEeecCCCCCC---eEeeecCCHHHHHHHHHHHH
Confidence            9776         4   7888 889999999999875

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=99.62  E-value=9.4e-16  Score=122.71  Aligned_cols=95  Identities=23%  Similarity=0.320  Sum_probs=82.7

Q ss_pred             ccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCcc
Q 013976          287 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKS  364 (432)
Q Consensus       287 ~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~~~g~~~  364 (432)
                      .++.+.....+++++|.||++||++|+.+.|.|.++++.+++  ++.++.+|++.+..  .+++|.++|++++|++|+.+
T Consensus        32 ~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~--~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~  109 (128)
T 3ul3_B           32 SNIINGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGK--RIYLLKVDLDKNESLARKFSVKSLPTIILLKNKTML  109 (128)
T ss_dssp             CSSSSBTTSCCSEEEEEEECTTCHHHHHHHHHHHHHHHHHGG--GEEEEEEEGGGCHHHHHHTTCCSSSEEEEEETTEEE
T ss_pred             ccHHHHHHccCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcC--CeEEEEEECCCCHHHHHHcCCCCcCEEEEEECCEEE
Confidence            333333456789999999999999999999999999999986  79999999998876  68999999999999988765


Q ss_pred             cCceeccCCCCHHHHHHHHHhc
Q 013976          365 FDPINVDVDRTVVALYKFLKKN  386 (432)
Q Consensus       365 ~~~~~y~g~~~~~~l~~fi~~~  386 (432)
                      .   .+.|..+.+.|.+||+++
T Consensus       110 ~---~~~G~~~~~~l~~~l~~~  128 (128)
T 3ul3_B          110 A---RKDHFVSSNDLIALIKKH  128 (128)
T ss_dssp             E---EESSCCCHHHHHHHHTTC
T ss_pred             E---EecCCCCHHHHHHHHHhC
Confidence            4   788999999999999864

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=99.62  E-value=1.1e-15  Score=119.09  Aligned_cols=103  Identities=20%  Similarity=0.430  Sum_probs=89.0

Q ss_pred             ceEEE-ecccchhhhhc-C--CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCc
Q 013976          280 DVKIV-VGNNFDEIVLD-E--SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFP  353 (432)
Q Consensus       280 ~v~~l-~~~~~~~~~~~-~--~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P  353 (432)
                      .|..+ +.++|++.+.. .  +++++|.||++||++|+.+.|.|.+++..+.+  ++.|+.+|++.+..  ..+++.++|
T Consensus         3 ~v~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~P   80 (112)
T 1ep7_A            3 SVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAG--KVIFLKVDVDAVAAVAEAAGITAMP   80 (112)
T ss_dssp             SEEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TSEEEEEETTTTHHHHHHHTCCBSS
T ss_pred             cEEEecCHHHHHHHHHhhcccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcCC--CeEEEEEECCchHHHHHHcCCCccc
Confidence            46777 45889988754 3  78999999999999999999999999999986  69999999998765  689999999


Q ss_pred             eEEEEeCCCcccCceeccCCCCHHHHHHHHHhcCC
Q 013976          354 TILFFPAGNKSFDPINVDVDRTVVALYKFLKKNAS  388 (432)
Q Consensus       354 ~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  388 (432)
                      ++++|++|+.+.   .+.|. +.+.|.+||+++++
T Consensus        81 t~~~~~~G~~~~---~~~G~-~~~~l~~~l~~~l~  111 (112)
T 1ep7_A           81 TFHVYKDGVKAD---DLVGA-SQDKLKALVAKHAA  111 (112)
T ss_dssp             EEEEEETTEEEE---EEESC-CHHHHHHHHHHHHC
T ss_pred             EEEEEECCeEEE---EEcCC-CHHHHHHHHHHHhc
Confidence            999999887654   68887 99999999998764

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=99.61  E-value=1.6e-15  Score=120.21  Aligned_cols=104  Identities=21%  Similarity=0.349  Sum_probs=91.4

Q ss_pred             CCceEEEecccchhhhhc---CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCC
Q 013976          278 DGDVKIVVGNNFDEIVLD---ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGF  352 (432)
Q Consensus       278 ~~~v~~l~~~~~~~~~~~---~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~  352 (432)
                      .+.+..++.++|++.+..   .+++++|.||++||++|+.+.|.|.+++..+.+   +.|+.+|++.+..  .++++.++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~vd~~~~~~~~~~~~v~~~   88 (122)
T 2vlu_A           12 AEVISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPN---AVFLKVDVDELKPIAEQFSVEAM   88 (122)
T ss_dssp             CCCEEECSHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTT---SEEEEEETTTCHHHHHHTTCCSS
T ss_pred             CcceeccCHHHHHHHHHHhhccCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC---cEEEEEECCCCHHHHHHcCCCcc
Confidence            345777888999998865   678999999999999999999999999999875   9999999998876  68999999


Q ss_pred             ceEEEEeCCCcccCceeccCCCCHHHHHHHHHhcCC
Q 013976          353 PTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNAS  388 (432)
Q Consensus       353 P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  388 (432)
                      |++++|++|+.+.   .+.|.. .+.|.+||++++.
T Consensus        89 Pt~~~~~~G~~~~---~~~G~~-~~~l~~~l~~~l~  120 (122)
T 2vlu_A           89 PTFLFMKEGDVKD---RVVGAI-KEELTAKVGLHAA  120 (122)
T ss_dssp             SEEEEEETTEEEE---EEESSC-HHHHHHHHHHHHS
T ss_pred             cEEEEEeCCEEEE---EEeCcC-HHHHHHHHHHHhc
Confidence            9999999887654   788877 9999999998764

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=99.61  E-value=3.5e-15  Score=137.00  Aligned_cols=158  Identities=16%  Similarity=0.266  Sum_probs=122.7

Q ss_pred             CCCcceeeeccCcccccCCC--------cccCccCCCCCChhHHHHHHHHhhCCCceeeCCHHHHHHHhhcCCeEEEEEe
Q 013976            1 MSWRTSTTFRASRRFTSSST--------ASIKLIMAAAPSKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYL   72 (432)
Q Consensus         1 ~~~Ptl~~f~~g~~~~~~~~--------~~~~~~Y~G~~~~~~i~~~l~~~~~~~~~~i~~~~~l~~~~~~~~~~vv~f~   72 (432)
                      .++||+++|++|+......-        ......|.|.|+++.|+.||.+++.+++..|.+.++++++++.....+|++|
T Consensus        90 ~~~Pt~~~~~~g~~v~~~~g~~~~~~~~~~~~~~y~G~r~~~~i~~fl~~~~~~~v~~i~~~~~l~~~l~~~~~~~vi~f  169 (298)
T 3ed3_A           90 NGFPTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDFSLSRIRSYVKKFVRIDTLGSLLRKSPKLSVVLF  169 (298)
T ss_dssp             CBSSEEEEEECCCC-------------CCCEEEECCSCCSHHHHHHHHHTTCCCCEEECSCGGGHHHHHTSCSSEEEEEE
T ss_pred             CccceEEEEECCceeecccccccccccccccceeecCCcCHHHHHHHHHHhcccccEEcCCHHHHHHHHhcCCceEEEEE
Confidence            47999999999973110000        0011359999999999999999999999999999999999987544444455


Q ss_pred             cCCCcchHHHHHHHh-ccCCCceEEEeCcHHHHhHcCC-----CC---------------CCCCCeEEEEecCCCceecc
Q 013976           73 NSLVGSESEVLADAS-RLEDDVNFYQTTNPDVAKIFHL-----DS---------------KVNRPALVMVKKETEKISYF  131 (432)
Q Consensus        73 ~~~~~~~~~~f~~~a-~~~~~~~F~~~~~~~~~~~~~~-----~~---------------~~~~p~i~l~~~~~~~~~~y  131 (432)
                      .. +......|..+| .+++.+.|+.+.+.+++..+++     +.               ..+.|+|++|+..++....|
T Consensus       170 s~-~~~~~~~f~~~A~~~~~~~~F~~v~~~~~a~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~P~lv~~~~~~~~~~~y  248 (298)
T 3ed3_A          170 SK-QDKISPVYKSIALDWLGKFDFYSISNKKLKQLTDMNPTYEKTPEIFKYLQKVIPEQRQSDKSKLVVFDADKDKFWEY  248 (298)
T ss_dssp             ES-SSSCCHHHHHHHHHTBTTEEEEEEEGGGCCCCCTTCTTSTTCHHHHHHHHHHHHHHTTCSSCEEEEEETTTTEEEEC
T ss_pred             cC-CCcchHHHHHHHHHhhcCcEEEEEcchHhhhhhhhhhhcccCcchhhhhhcccccccccCCCeEEEEcCCCCceEEe
Confidence            43 456778999999 7889999999998887754422     00               02469999999988899999


Q ss_pred             cC-CCCCHHHHHHHHH--hcCCCceeecCCCc
Q 013976          132 AD-GKFDKSTIADFVF--SNKLPLVTIFTREN  160 (432)
Q Consensus       132 ~~-g~~~~~~l~~fi~--~~~~p~v~~l~~~~  160 (432)
                       . +.++.++|..||.  .+..|.+.+++..+
T Consensus       249 -~g~~~~~~~i~~fi~~~~~~~p~~~~ls~~~  279 (298)
T 3ed3_A          249 -EGNSINKNDISKFLRDTFSITPNEGPFSRRS  279 (298)
T ss_dssp             -CCSSCCHHHHHHHHHHHHTCCCSSSTTSHHH
T ss_pred             -ccccCCHHHHHHHHHhhcCCCCCcCCCchHH
Confidence             6 5789999999999  88999999999865

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=99.61  E-value=1.6e-14  Score=127.91  Aligned_cols=194  Identities=8%  Similarity=0.030  Sum_probs=147.1

Q ss_pred             CHHHHHHHh--hcCCeEEEEEecCC-----Ccc---hHHHHHHHh-cc--CCCceEEEeC---cHHHHhHcCCCCCCCCC
Q 013976           53 TLDEAERVL--TSETKVVLGYLNSL-----VGS---ESEVLADAS-RL--EDDVNFYQTT---NPDVAKIFHLDSKVNRP  116 (432)
Q Consensus        53 ~~~~l~~~~--~~~~~~vv~f~~~~-----~~~---~~~~f~~~a-~~--~~~~~F~~~~---~~~~~~~~~~~~~~~~p  116 (432)
                      +.++++.++  +....++|.+|.+.     |.+   ....+.++| .+  .+.+.|+.++   ++++|++|++..   +|
T Consensus         7 ~~~~l~~~~~~~~~~~v~v~~~~~~~~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~---~P   83 (229)
T 2ywm_A            7 VRMQLKELAQKEFKEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHKEETEKYGVDR---VP   83 (229)
T ss_dssp             HHHHHHHHHHHHCCSCEEEEEECCCTTCGGGGHHHHHHHHHHHHHHHHHCTTTEEEEEECTTTCHHHHHHTTCCB---SS
T ss_pred             HHHHHHHHHHHhccCCeEEEEEccCCCCcccHHHHHHHHHHHHHHhccCCCCceEEEEecCcccHHHHHHcCCCc---Cc
Confidence            456777777  33444444455332     333   334455554 33  6778998864   788999999986   79


Q ss_pred             eEEEEecCCCceecccCCCCCHHHHHHHHHhcC--CCceeecCCCchhhhccCCCcc-eEEEEEeC-cchhhhHHHHHHH
Q 013976          117 ALVMVKKETEKISYFADGKFDKSTIADFVFSNK--LPLVTIFTRENAPSVFESPIKN-QLLLFAVS-NDSEKLLPVFEEA  192 (432)
Q Consensus       117 ~i~l~~~~~~~~~~y~~g~~~~~~l~~fi~~~~--~p~v~~l~~~~~~~~~~~~~~~-~i~~~~~~-~~~~~~~~~~~~~  192 (432)
                      ++++|+. +.....| .|..+..+|..|+....  .+.+..++.+++..+...+.++ ++.||++| ++|+.+.+.+.++
T Consensus        84 tl~~~~~-~~~~~~~-~G~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~~~~~~~  161 (229)
T 2ywm_A           84 TIVIEGD-KDYGIRY-IGLPAGLEFTTLINGIFHVSQRKPQLSEKTLELLQVVDIPIEIWVFVTTSCGYCPSAAVMAWDF  161 (229)
T ss_dssp             EEEEESS-SCCCEEE-ESCCCTTHHHHHHHHHHHHHTTCCSCCHHHHHHHTTCCSCEEEEEEECTTCTTHHHHHHHHHHH
T ss_pred             EEEEECC-Cccccee-cCCccHHHHHHHHHHHHhccCCccCCCHHHHHHHHhcCCCeEEEEEECCCCcchHHHHHHHHHH
Confidence            9999974 3456778 89888899999997643  2346778888888877666666 55699999 9999999999999


Q ss_pred             HHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCceecCCCCCCHHHHHHHHHHHhc
Q 013976          193 AKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  261 (432)
Q Consensus       193 a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  261 (432)
                      +..+ +++.|+.+|++.   ++.+++.||+.+.  |++++  ++  +...+.|..+.+.|.+|+...+.
T Consensus       162 ~~~~-~~v~~~~vd~~~---~~~l~~~~~v~~~--Pt~~~--~G--~~~~~~G~~~~~~l~~~l~~~~~  220 (229)
T 2ywm_A          162 ALAN-DYITSKVIDASE---NQDLAEQFQVVGV--PKIVI--NK--GVAEFVGAQPENAFLGYIMAVYE  220 (229)
T ss_dssp             HHHC-TTEEEEEEEGGG---CHHHHHHTTCCSS--SEEEE--GG--GTEEEESCCCHHHHHHHHHHHHH
T ss_pred             HHHC-CCeEEEEEECCC---CHHHHHHcCCccc--CEEEE--CC--EEEEeeCCCCHHHHHHHHHHHhh
Confidence            9999 579999999987   5689999999988  99977  33  24457899999999999999875

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=99.60  E-value=3e-15  Score=118.99  Aligned_cols=103  Identities=25%  Similarity=0.431  Sum_probs=88.2

Q ss_pred             CCceEEEecccchhhhhc-CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCC-ccc--ccCCCCCCc
Q 013976          278 DGDVKIVVGNNFDEIVLD-ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT-NEH--HRAKSDGFP  353 (432)
Q Consensus       278 ~~~v~~l~~~~~~~~~~~-~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~-~~~--~~~~i~~~P  353 (432)
                      .+.+..++.++|.+.+.+ .+++++|.||++||++|+.+.|.+.+++..+.+   +.++.+|++. +..  .++++.++|
T Consensus        17 ~~~v~~l~~~~~~~~~~~~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~---~~~~~vd~~~~~~~~~~~~~v~~~P   93 (124)
T 1faa_A           17 VGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLD---VIFLKLDCNQENKTLAKELGIRVVP   93 (124)
T ss_dssp             TTSEEEECTTTHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT---SEEEEEECSSTTHHHHHHHCCSSSS
T ss_pred             CCceEEecchhHHHHHHhcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHCCC---CEEEEEecCcchHHHHHHcCCCeee
Confidence            456899999999998864 578999999999999999999999999999864   8999999983 433  579999999


Q ss_pred             eEEEEeCCCcccCceeccCCCCHHHHHHHHHhcC
Q 013976          354 TILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA  387 (432)
Q Consensus       354 ~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  387 (432)
                      +++++++|+.+.   .+.|.. .+.|.++|++..
T Consensus        94 t~~~~~~G~~~~---~~~G~~-~~~l~~~i~~~~  123 (124)
T 1faa_A           94 TFKILKENSVVG---EVTGAK-YDKLLEAIQAAR  123 (124)
T ss_dssp             EEEEEETTEEEE---EEESSC-HHHHHHHHHHHT
T ss_pred             EEEEEeCCcEEE---EEcCCC-HHHHHHHHHHhh
Confidence            999999997654   677764 899999998764

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=99.60  E-value=1.9e-15  Score=117.93  Aligned_cols=101  Identities=22%  Similarity=0.427  Sum_probs=89.3

Q ss_pred             CceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEE
Q 013976          279 GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTIL  356 (432)
Q Consensus       279 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~  356 (432)
                      +....++..+|++.+ +.+++++|+||++||++|+.+.|.|.+++..+.   ++.|+.+|++.+..  .++++.++|+++
T Consensus         9 ~~~~~~~~~~f~~~~-~~~k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~---~v~~~~vd~~~~~~~~~~~~v~~~Pt~~   84 (112)
T 1syr_A            9 MVKIVTSQAEFDSII-SQNELVIVDFFAEWCGPCKRIAPFYEECSKTYT---KMVFIKVDVDEVSEVTEKENITSMPTFK   84 (112)
T ss_dssp             CCEEECSHHHHHHHH-HHCSEEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTTHHHHHHTTCCSSSEEE
T ss_pred             eEEEECCHHHHHHHH-ccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcC---CCEEEEEECCCCHHHHHHcCCCcccEEE
Confidence            457788899999977 567899999999999999999999999999886   39999999998875  689999999999


Q ss_pred             EEeCCCcccCceeccCCCCHHHHHHHHHhcC
Q 013976          357 FFPAGNKSFDPINVDVDRTVVALYKFLKKNA  387 (432)
Q Consensus       357 ~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  387 (432)
                      +|++|+.+.   .+.|. +.+.|.+||++.+
T Consensus        85 ~~~~G~~~~---~~~G~-~~~~l~~~l~~~l  111 (112)
T 1syr_A           85 VYKNGSSVD---TLLGA-NDSALKQLIEKYA  111 (112)
T ss_dssp             EEETTEEEE---EEESC-CHHHHHHHHHTTC
T ss_pred             EEECCcEEE---EEeCC-CHHHHHHHHHHhh
Confidence            999887654   68887 9999999998865

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=99.60  E-value=4.2e-15  Score=118.13  Aligned_cols=103  Identities=22%  Similarity=0.390  Sum_probs=88.9

Q ss_pred             CCceEEE-ecccchhhhhc---CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCC
Q 013976          278 DGDVKIV-VGNNFDEIVLD---ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDG  351 (432)
Q Consensus       278 ~~~v~~l-~~~~~~~~~~~---~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~  351 (432)
                      .+.+..+ +.++|++.+..   .+++++|+||++||++|+.+.|.|.+++..+.   ++.|+.+|++.+..  .+++|.+
T Consensus        15 ~~~v~~l~~~~~~~~~l~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~---~v~~~~vd~d~~~~l~~~~~v~~   91 (124)
T 1xfl_A           15 EGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLP---NVLFLKVDTDELKSVASDWAIQA   91 (124)
T ss_dssp             CSCCEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS---SEEEEEEETTTSHHHHHHTTCCS
T ss_pred             CCcEEEeCCHHHHHHHHHHhhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC---CcEEEEEECccCHHHHHHcCCCc
Confidence            4567777 56889988754   47899999999999999999999999999986   49999999998765  6899999


Q ss_pred             CceEEEEeCCCcccCceeccCCCCHHHHHHHHHhcC
Q 013976          352 FPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA  387 (432)
Q Consensus       352 ~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  387 (432)
                      +|++++|++|+.+.   .+.| .+.+.|.++|++.+
T Consensus        92 ~Pt~~~~~~G~~~~---~~~G-~~~~~l~~~l~~~l  123 (124)
T 1xfl_A           92 MPTFMFLKEGKILD---KVVG-AKKDELQSTIAKHL  123 (124)
T ss_dssp             SSEEEEEETTEEEE---EEES-CCHHHHHHHHHHHC
T ss_pred             cCEEEEEECCEEEE---EEeC-CCHHHHHHHHHHhc
Confidence            99999999887654   6777 58999999998865

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=99.60  E-value=2.3e-15  Score=117.31  Aligned_cols=102  Identities=12%  Similarity=0.242  Sum_probs=83.9

Q ss_pred             eEEEec-ccchhhhh--cCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceE
Q 013976          281 VKIVVG-NNFDEIVL--DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTI  355 (432)
Q Consensus       281 v~~l~~-~~~~~~~~--~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i  355 (432)
                      |..++. ++|++.+.  ..+++++|.||++||++|+.+.|.|.+++..+.. +++.|+.+|++.+..  ..+++.++|++
T Consensus         2 v~~i~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~~vd~~~~~~~~~~~~v~~~Pt~   80 (112)
T 3d6i_A            2 VIEINDQEQFTYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSN-SNVSFLSIDADENSEISELFEISAVPYF   80 (112)
T ss_dssp             EEEECCHHHHHHHHTTTTTTCCEEEEEECCC--CHHHHHHHHHHHHHCGGG-TTSEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             ccccCCHHHHHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHhcCC-CCEEEEEEecccCHHHHHHcCCCcccEE
Confidence            567887 89999774  2368999999999999999999999999998643 269999999998876  68999999999


Q ss_pred             EEEeCCCcccCceeccCCCCHHHHHHHHHhcC
Q 013976          356 LFFPAGNKSFDPINVDVDRTVVALYKFLKKNA  387 (432)
Q Consensus       356 ~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  387 (432)
                      ++|++|+.+.   .+.|. ..+.|.++|++++
T Consensus        81 ~~~~~G~~~~---~~~G~-~~~~l~~~l~~~~  108 (112)
T 3d6i_A           81 IIIHKGTILK---ELSGA-DPKEYVSLLEDCK  108 (112)
T ss_dssp             EEEETTEEEE---EECSC-CHHHHHHHHHHHH
T ss_pred             EEEECCEEEE---EecCC-CHHHHHHHHHHHH
Confidence            9999887664   67776 4567999998765

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=99.60  E-value=2.2e-15  Score=118.44  Aligned_cols=100  Identities=19%  Similarity=0.449  Sum_probs=87.1

Q ss_pred             ceEEEec-ccchhhhhc-CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceE
Q 013976          280 DVKIVVG-NNFDEIVLD-ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTI  355 (432)
Q Consensus       280 ~v~~l~~-~~~~~~~~~-~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i  355 (432)
                      .+..++. ++|++.+.+ .+++++|.||++||++|+.+.|.|.+++..+    ++.|+.+|++.+..  .++++.++|++
T Consensus        14 ~v~~l~~~~~~~~~l~~~~~~~~vv~f~a~wC~~C~~~~~~~~~~~~~~----~~~~~~vd~~~~~~~~~~~~v~~~Pt~   89 (117)
T 2xc2_A           14 ELIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY----DAIFVKVDVDKLEETARKYNISAMPTF   89 (117)
T ss_dssp             EEEECCSTTHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHTTS----SSEEEEEETTTSHHHHHHTTCCSSSEE
T ss_pred             eeEEeCCHHHHHHHHHhCCCCEEEEEEECCCCHhHHHHhHHHHHHHHHc----CcEEEEEECCccHHHHHHcCCCccceE
Confidence            3778888 899998754 6789999999999999999999999998877    48999999998876  68999999999


Q ss_pred             EEEeCCCcccCceeccCCCCHHHHHHHHHhcC
Q 013976          356 LFFPAGNKSFDPINVDVDRTVVALYKFLKKNA  387 (432)
Q Consensus       356 ~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  387 (432)
                      ++|++|+.+.   .+.| .+.+.|.++|++++
T Consensus        90 ~~~~~G~~~~---~~~G-~~~~~l~~~l~~~l  117 (117)
T 2xc2_A           90 IAIKNGEKVG---DVVG-ASIAKVEDMIKKFI  117 (117)
T ss_dssp             EEEETTEEEE---EEES-SCHHHHHHHHHHHC
T ss_pred             EEEeCCcEEE---EEeC-CCHHHHHHHHHHhC
Confidence            9999887654   6778 68999999998763

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=99.60  E-value=6e-14  Score=125.37  Aligned_cols=217  Identities=13%  Similarity=0.130  Sum_probs=156.4

Q ss_pred             CceeecCCCchhhhc-cCCCcceEEEEEeC-cchhhhHHHHHHHHHhccC---ceEEEEEecCCcccccchhhhhCCCCC
Q 013976          151 PLVTIFTRENAPSVF-ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG---KLIFVYVQMDNEDVGKPVSEYFGITGE  225 (432)
Q Consensus       151 p~v~~l~~~~~~~~~-~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~---~i~f~~vd~~~~~~~~~l~~~~~i~~~  225 (432)
                      ..+..++.+++...+ ..++++++.||++| ++|+.+.+.|.++++++.+   .+.|+.+||+... ++.+|+.|+|.+.
T Consensus        12 ~~v~~l~~~~f~~~i~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~-~~~l~~~~~v~~~   90 (244)
T 3q6o_A           12 DPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEET-NSAVCRDFNIPGF   90 (244)
T ss_dssp             SSSEEECTTTHHHHHSSCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTSTT-THHHHHHTTCCSS
T ss_pred             CCceeCChhhHHHHHhhCCCeEEEEEECCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCchh-hHHHHHHcCCCcc
Confidence            357889999998754 55578889999999 9999999999999999987   7999999996544 6799999999998


Q ss_pred             CCcEEEEEeCCC----CceecCCCCCCHHHHHHHHHHHhcCCcCccccCCCCCCCCCCceEEEecccchhhhhcCC-CcE
Q 013976          226 APKVLAYTGNDD----AKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDES-KDV  300 (432)
Q Consensus       226 ~~P~i~i~~~~~----~~~y~~~~~~~~~~i~~fi~~~~~g~l~~~~~se~~p~~~~~~v~~l~~~~~~~~~~~~~-~~~  300 (432)
                        |+++++..+.    +....+.| .+.+.|.+|+.+++.....      ..|.. ...+..++..++.+++.... +.+
T Consensus        91 --Pt~~~~~~g~~~~~g~~~~~~g-~~~~~l~~~i~~~l~~~~~------~~p~~-~p~l~~~~~~~l~~~~~~~~~~~~  160 (244)
T 3q6o_A           91 --PTVRFFXAFTXNGSGAVFPVAG-ADVQTLRERLIDALESHHD------TWPPA-CPPLEPAXLEEIDGFFARNNEEYL  160 (244)
T ss_dssp             --SEEEEECTTCCSSSCEECCCTT-CCHHHHHHHHHHHHHTCTT------SCCTT-SCCCSCCCHHHHHTHHHHCCCSEE
T ss_pred             --CEEEEEeCCCcCCCCeeEecCC-CCHHHHHHHHHHHHHhccc------cCCCC-CCCcccccHHHHHHHhhcCCCceE
Confidence              9999997643    22334455 7999999999999874331      12211 11233345567777664443 566


Q ss_pred             EEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc-ccCCCCCCceEEEEeCCCcccCceeccC-CCCHHH
Q 013976          301 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-HRAKSDGFPTILFFPAGNKSFDPINVDV-DRTVVA  378 (432)
Q Consensus       301 lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-~~~~i~~~P~i~~~~~g~~~~~~~~y~g-~~~~~~  378 (432)
                      .++|....|.       ...+++..+.....+.+..++-..... .+|+|+++|++++|.++.+.   ..+.. ..+.+.
T Consensus       161 al~f~~~~~~-------~~~~~~~d~~~~~~i~v~~~~~~~~~l~~~f~v~~~Pslvl~~~~g~~---~~~~~~~~~r~~  230 (244)
T 3q6o_A          161 ALIFEXGGSY-------LAREVALDLSQHKGVAVRRVLNTEANVVRKFGVTDFPSCYLLFRNGSV---SRVPVLMESRSF  230 (244)
T ss_dssp             EEEEECTTCC-------HHHHHHHHTTTCTTEEEEEEETTCHHHHHHHTCCCSSEEEEEETTSCE---EECCCSSSSHHH
T ss_pred             EEEEEECCcc-------hHHHHHHHhccCCceEEEEEeCchHHHHHHcCCCCCCeEEEEeCCCCe---EeeccccccHHH
Confidence            6777766543       345566667665679998888554444 78999999999999765543   24553 567788


Q ss_pred             HHHHHHhcCC
Q 013976          379 LYKFLKKNAS  388 (432)
Q Consensus       379 l~~fi~~~~~  388 (432)
                      +..+|+...+
T Consensus       231 ~~~~l~~~~~  240 (244)
T 3q6o_A          231 YTAYLQRLSG  240 (244)
T ss_dssp             HHHHHHTC--
T ss_pred             HHHHHHhCCC
Confidence            8888877655

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=99.59  E-value=3.7e-15  Score=114.41  Aligned_cols=99  Identities=19%  Similarity=0.497  Sum_probs=84.9

Q ss_pred             EEEec-ccchhhhhc-CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEE
Q 013976          282 KIVVG-NNFDEIVLD-ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILF  357 (432)
Q Consensus       282 ~~l~~-~~~~~~~~~-~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~  357 (432)
                      ..++. ++|++.+.+ .+++++|.||++||++|+.+.|.+.+++..+.   ++.|+.+|++.+..  ..+++.++|++++
T Consensus         2 ~~i~~~~~~~~~l~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~---~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~   78 (104)
T 2vim_A            2 RVLATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP---EVEFAKVDVDQNEEAAAKYSVTAMPTFVF   78 (104)
T ss_dssp             EECCSHHHHHHHHHTTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred             eecCCHHHHHHHHHhcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHCC---CCEEEEEeccCCHHHHHHcCCccccEEEE
Confidence            44555 788887754 57899999999999999999999999999885   59999999998875  6899999999999


Q ss_pred             EeCCCcccCceeccCCCCHHHHHHHHHhcC
Q 013976          358 FPAGNKSFDPINVDVDRTVVALYKFLKKNA  387 (432)
Q Consensus       358 ~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  387 (432)
                      |++|+.+.   .+.| .+.+.|.+||++++
T Consensus        79 ~~~g~~~~---~~~G-~~~~~l~~~l~~~l  104 (104)
T 2vim_A           79 IKDGKEVD---RFSG-ANETKLRETITRHK  104 (104)
T ss_dssp             EETTEEEE---EEES-SCHHHHHHHHHHHC
T ss_pred             EeCCcEEE---EEeC-CCHHHHHHHHHhhC
Confidence            99887654   6778 68999999998763

>2l4c_A Endoplasmic reticulum resident protein 27; ERP27, PDI, B domain, peptide binding; NMR {Homo sapiens}

Probab=99.59  E-value=5.2e-15  Score=116.40  Aligned_cols=106  Identities=14%  Similarity=0.245  Sum_probs=95.4

Q ss_pred             HHHhhCCCcee--eCCHHHHHHHhhcCCeEEEEEecCCCcchHHHHHHHhccCCCceEEEeCcHHHHhHcCCCCCCCCCe
Q 013976           40 IKKKIGPGIYN--ITTLDEAERVLTSETKVVLGYLNSLVGSESEVLADASRLEDDVNFYQTTNPDVAKIFHLDSKVNRPA  117 (432)
Q Consensus        40 l~~~~~~~~~~--i~~~~~l~~~~~~~~~~vv~f~~~~~~~~~~~f~~~a~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~  117 (432)
                      |+++++|++..  |++.+++++|++.++++|||||.+.+++.++.|.++|+..+++.|++++++++++++++..    |+
T Consensus        13 m~kq~gP~~~~~~i~s~~e~e~fi~~~~v~VVGfF~~~~~~~~~~F~~~A~~~~d~~F~~t~~~~v~~~~~v~~----~~   88 (124)
T 2l4c_A           13 SSDGPGAAQEPTWLTDVPAAMEFIAATEVAVIGFFQDLEIPAVPILHSMVQKFPGVSFGISTDSEVLTHYNITG----NT   88 (124)
T ss_dssp             SCCCSCCSCCCEECCSHHHHHHHHHTSSEEEEEECSCTTSTHHHHHHHHHHHCTTSEEEEECCHHHHHHTTCCS----SC
T ss_pred             HHhccCCCCcceEcCCHHHHHHHHhcCCCEEEEEECCCCChhHHHHHHHHHhCCCceEEEEChHHHHHHcCCCC----Ce
Confidence            45788898855  9999999999999999999999999999999999999444999999999999999999985    99


Q ss_pred             EEEEecCCCceecccCC----CCCHHHHHHHHHhcCC
Q 013976          118 LVMVKKETEKISYFADG----KFDKSTIADFVFSNKL  150 (432)
Q Consensus       118 i~l~~~~~~~~~~y~~g----~~~~~~l~~fi~~~~~  150 (432)
                      |+|||++++....| .|    +++.++|.+||..+++
T Consensus        89 vvlfkkfde~~~~~-~g~~~~~~~~~~L~~FI~~n~l  124 (124)
T 2l4c_A           89 ICLFRLVDNEQLNL-EDEDIESIDATKLSRFIEINSL  124 (124)
T ss_dssp             EEEEETTTTEEEEE-CHHHHTTCCHHHHHHHHHHHCC
T ss_pred             EEEEEcCCCCceee-cCcccCCCCHHHHHHHHHHhcC
Confidence            99999988888889 75    7999999999998763

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.59  E-value=2.3e-16  Score=127.94  Aligned_cols=104  Identities=20%  Similarity=0.371  Sum_probs=87.3

Q ss_pred             CceEEEecccchhhhhcCC-CcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCC-----
Q 013976          279 GDVKIVVGNNFDEIVLDES-KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSD-----  350 (432)
Q Consensus       279 ~~v~~l~~~~~~~~~~~~~-~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~-----  350 (432)
                      +.|..++..+|++.+.... ++++|.||++||++|+.+.|.|.+++..+.+ .++.|+.+|++.+..  .+++|.     
T Consensus         7 ~~v~~l~~~~f~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~-~~v~~~~vd~~~~~~~~~~~~v~~~~~~   85 (137)
T 2dj0_A            7 GYIKYFNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNC-TGLNFGKVDVGRYTDVSTRYKVSTSPLT   85 (137)
T ss_dssp             SCCEECCTTHHHHHHHHSTTSCEEEEECCTTCSTTTTTHHHHHHHHHHHCS-SSCEEEECCTTTCHHHHHHTTCCCCSSS
T ss_pred             ceEEEccHhhHHHHHhcCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CCeEEEEEeCccCHHHHHHccCcccCCc
Confidence            4588999999999886554 4899999999999999999999999999975 269999999998876  689998     


Q ss_pred             -CCceEEEEeCCCcccCceeccCCCCHHHHHHHHHhc
Q 013976          351 -GFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKN  386 (432)
Q Consensus       351 -~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~  386 (432)
                       ++|++++|++|+.+.   ++.|..+.+.|.+||.++
T Consensus        86 ~~~Pt~~~~~~G~~~~---~~~G~~~~~~l~~~l~~~  119 (137)
T 2dj0_A           86 KQLPTLILFQGGKEAM---RRPQIDKKGRAVSWTFSE  119 (137)
T ss_dssp             SCSSEEEEESSSSEEE---EESCBCSSSCBCCCCCCH
T ss_pred             CCCCEEEEEECCEEEE---EecCcCchHHHHHHHhcc
Confidence             999999999887654   677877766666665443

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=99.59  E-value=4.3e-15  Score=114.26  Aligned_cols=96  Identities=20%  Similarity=0.409  Sum_probs=83.6

Q ss_pred             ecccchhhhhc-CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEEEeCC
Q 013976          285 VGNNFDEIVLD-ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAG  361 (432)
Q Consensus       285 ~~~~~~~~~~~-~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~~~g  361 (432)
                      +.++|++.+.+ .+++++|.||++||++|+.+.|.|.+++..+++   +.|+.+|++.+..  ..+++.++|++++|++|
T Consensus         7 ~~~~~~~~l~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~---~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g   83 (105)
T 3m9j_A            7 SKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN---VIFLEVDVDDCQDVASESEVKSMPTFQFFKKG   83 (105)
T ss_dssp             SHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHSTT---SEEEEEETTTCHHHHHHTTCCBSSEEEEEETT
T ss_pred             CHHHHHHHHHhcCCCeEEEEEECCCChhhHHHHHHHHHHHHHccC---eEEEEEEhhhhHHHHHHcCCCcCcEEEEEECC
Confidence            34677777643 578999999999999999999999999999865   9999999998876  68999999999999998


Q ss_pred             CcccCceeccCCCCHHHHHHHHHhcC
Q 013976          362 NKSFDPINVDVDRTVVALYKFLKKNA  387 (432)
Q Consensus       362 ~~~~~~~~y~g~~~~~~l~~fi~~~~  387 (432)
                      +.+.   .+.|. +.+.|.++|++++
T Consensus        84 ~~~~---~~~g~-~~~~l~~~l~~~l  105 (105)
T 3m9j_A           84 QKVG---EFSGA-NKEKLEATINELV  105 (105)
T ss_dssp             EEEE---EEESS-CHHHHHHHHHHHC
T ss_pred             eEEE---EEeCC-CHHHHHHHHHHhC
Confidence            8764   78887 9999999998763

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=99.58  E-value=8.5e-15  Score=130.94  Aligned_cols=113  Identities=26%  Similarity=0.440  Sum_probs=94.5

Q ss_pred             CCceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcC-CCCEEEEEEeCCC--ccc--ccCCCCCC
Q 013976          278 DGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRG-VDSIVIAKMDGTT--NEH--HRAKSDGF  352 (432)
Q Consensus       278 ~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~-~~~~~~~~id~~~--~~~--~~~~i~~~  352 (432)
                      .+.|..|++.+|++.+.+.+++++|.|||+||++|+.+.|.|.++++.+.+ ...+.|+.+||+.  +..  .+++|.++
T Consensus        11 ~~~v~~l~~~~f~~~i~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~v~~~   90 (244)
T 3q6o_A           11 SDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIPGF   90 (244)
T ss_dssp             TSSSEEECTTTHHHHHSSCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTSTTTHHHHHHTTCCSS
T ss_pred             CCCceeCChhhHHHHHhhCCCeEEEEEECCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCchhhHHHHHHcCCCcc
Confidence            567999999999998878789999999999999999999999999999986 2369999999954  433  68999999


Q ss_pred             ceEEEEeCCCccc--CceeccCCCCHHHHHHHHHhcCCCCC
Q 013976          353 PTILFFPAGNKSF--DPINVDVDRTVVALYKFLKKNASIPF  391 (432)
Q Consensus       353 P~i~~~~~g~~~~--~~~~y~g~~~~~~l~~fi~~~~~~~~  391 (432)
                      |++++|.+|.+..  ..+.+.| .+.+.|.++|.+++....
T Consensus        91 Pt~~~~~~g~~~~~g~~~~~~g-~~~~~l~~~i~~~l~~~~  130 (244)
T 3q6o_A           91 PTVRFFXAFTXNGSGAVFPVAG-ADVQTLRERLIDALESHH  130 (244)
T ss_dssp             SEEEEECTTCCSSSCEECCCTT-CCHHHHHHHHHHHHHTCT
T ss_pred             CEEEEEeCCCcCCCCeeEecCC-CCHHHHHHHHHHHHHhcc
Confidence            9999999876531  2234555 799999999999886543

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=99.58  E-value=1.2e-15  Score=123.73  Aligned_cols=106  Identities=14%  Similarity=0.142  Sum_probs=77.0

Q ss_pred             ceEEEecccchhhhhcCCCcEEEEEeCCC--ChhhhhhHHHHHHHHHHhcCCCCEE--EEEEeCCCccc--ccCCCCCCc
Q 013976          280 DVKIVVGNNFDEIVLDESKDVLLEIYAPW--CGHCQAFEPTYNKLAKHLRGVDSIV--IAKMDGTTNEH--HRAKSDGFP  353 (432)
Q Consensus       280 ~v~~l~~~~~~~~~~~~~~~~lv~f~~~~--c~~c~~~~~~~~~la~~~~~~~~~~--~~~id~~~~~~--~~~~i~~~P  353 (432)
                      .+..++.++|++.+ ..++.++|+|+++|  |++|+.+.|.|+++++.+ +  ++.  |+.||++.+..  .+|+|.++|
T Consensus        18 ~~~~l~~~~f~~~i-~~~~~~vv~f~~~~~~C~~C~~l~P~l~~la~~~-~--~v~~~~~~Vd~d~~~~la~~~~V~~iP   93 (142)
T 2es7_A           18 GWQPVEASTVDDWI-KRVGDGVILLSSDPRRTPEVSDNPVMIAELLREF-P--QFDWQVAVADLEQSEAIGDRFNVRRFP   93 (142)
T ss_dssp             TCEECCCC---------CCSEEEEECCCSCC----CCHHHHHHHHHHTC-T--TSCCEEEEECHHHHHHHHHTTTCCSSS
T ss_pred             cCcccccccHHHHH-HhCCCEEEEEECCCCCCccHHHHHHHHHHHHHHh-c--ccceeEEEEECCCCHHHHHhcCCCcCC
Confidence            47788999999987 44567888999887  999999999999999998 5  578  99999998776  689999999


Q ss_pred             eEEEEeCCCcccCceeccCCCCHHHHHHHHHhcCCCCCc
Q 013976          354 TILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPFK  392 (432)
Q Consensus       354 ~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~~~  392 (432)
                      |+++|++|+.+.   ++.|..+.+.|.+||++.+..+..
T Consensus        94 T~~~fk~G~~v~---~~~G~~~~~~l~~~i~~~l~~~~~  129 (142)
T 2es7_A           94 ATLVFTDGKLRG---ALSGIHPWAELLTLMRSIVDTPAA  129 (142)
T ss_dssp             EEEEESCC-------CEESCCCHHHHHHHHHHHHC----
T ss_pred             eEEEEeCCEEEE---EEeCCCCHHHHHHHHHHHhccccc
Confidence            999999998765   789999999999999999865443

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A

Probab=99.58  E-value=7.1e-15  Score=129.86  Aligned_cols=104  Identities=21%  Similarity=0.352  Sum_probs=90.6

Q ss_pred             CCceEEEecccchhhhhcCCCcEEEEEe--CCCChhhhhhHHHHHHHHHHhcC-CCCEEEEEEeCCC-----ccc--ccC
Q 013976          278 DGDVKIVVGNNFDEIVLDESKDVLLEIY--APWCGHCQAFEPTYNKLAKHLRG-VDSIVIAKMDGTT-----NEH--HRA  347 (432)
Q Consensus       278 ~~~v~~l~~~~~~~~~~~~~~~~lv~f~--~~~c~~c~~~~~~~~~la~~~~~-~~~~~~~~id~~~-----~~~--~~~  347 (432)
                      .+.|..|+..+|++.+ +.++++||.||  ||||+    +.|.|.++|..+.+ .+++.|+.|||+.     +..  .++
T Consensus        15 ~~~v~~Lt~~nF~~vi-~~~~~vlV~Fy~~ApWCg----l~P~~e~lA~~~~~~~~~v~~akVD~d~~g~~~n~~la~~~   89 (248)
T 2c0g_A           15 CTGCVDLDELSFEKTV-ERFPYSVVKFDIASPYGE----KHEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRY   89 (248)
T ss_dssp             CTTCEECCTTTHHHHH-TTSSEEEEEEEESSCCSH----HHHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHT
T ss_pred             CCCcEECCHHHHHHHH-hcCCCEEEEEECCCCCCc----cHHHHHHHHHHHhccCCCeEEEEEECCcccccccHHHHHHh
Confidence            4568899999999954 77789999999  99998    99999999999965 4579999999998     544  689


Q ss_pred             CCC--CCceEEEEeCCCcccCceec--cCCCCHHHHHHHHHhcCC
Q 013976          348 KSD--GFPTILFFPAGNKSFDPINV--DVDRTVVALYKFLKKNAS  388 (432)
Q Consensus       348 ~i~--~~P~i~~~~~g~~~~~~~~y--~g~~~~~~l~~fi~~~~~  388 (432)
                      +|.  ++||+++|+ |... .+..|  .|.++.+.|.+||+++++
T Consensus        90 ~V~~~~~PTl~~F~-G~~~-~~~~y~~~G~~~~~~L~~fi~~~~~  132 (248)
T 2c0g_A           90 KVDDKNFPSIFLFK-GNAD-EYVQLPSHVDVTLDNLKAFVSANTP  132 (248)
T ss_dssp             TCCTTSCCEEEEES-SSSS-SEEECCTTSCCCHHHHHHHHHHHSS
T ss_pred             CCCcCCCCeEEEEe-CCcC-cceeecccCCCCHHHHHHHHHHhhc
Confidence            999  999999999 8732 46688  999999999999999986

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=99.57  E-value=1e-13  Score=136.21  Aligned_cols=220  Identities=13%  Similarity=0.131  Sum_probs=159.9

Q ss_pred             ceeecCCCchhhhc-cCCCcceEEEEEeC-cchhhhHHHHHHHHHhccC---ceEEEEEecCCcccccchhhhhCCCCCC
Q 013976          152 LVTIFTRENAPSVF-ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG---KLIFVYVQMDNEDVGKPVSEYFGITGEA  226 (432)
Q Consensus       152 ~v~~l~~~~~~~~~-~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~---~i~f~~vd~~~~~~~~~l~~~~~i~~~~  226 (432)
                      .|.+++.+++...+ ..+++++|.||++| ++|+.+.+.|.++|+++.+   .+.|+.|||+.+. ++.+++.|||.+. 
T Consensus        13 ~V~~Lt~~~f~~~v~~~~k~vlV~FyA~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~d~-~~~l~~~~~V~~~-   90 (519)
T 3t58_A           13 PLTLLDADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEET-NSAVCREFNIAGF-   90 (519)
T ss_dssp             SSEEECTTTHHHHHSSCSSEEEEEEECTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTSGG-GHHHHHHTTCCSB-
T ss_pred             CcEECChHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCccc-cHHHHHHcCCccc-
Confidence            47889999998754 55678889999999 9999999999999999987   7999999997544 6799999999998 


Q ss_pred             CcEEEEEeCCCC---ceecCCCCCCHHHHHHHHHHHhcCCcCccccCCCCCCCCCCceEEEecccchhhhhcCC-CcEEE
Q 013976          227 PKVLAYTGNDDA---KKHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDES-KDVLL  302 (432)
Q Consensus       227 ~P~i~i~~~~~~---~~y~~~~~~~~~~i~~fi~~~~~g~l~~~~~se~~p~~~~~~v~~l~~~~~~~~~~~~~-~~~lv  302 (432)
                       |+++++..+..   ....+.|..+.+.|.+|+.+++.....      ..|.. ...+..++..++++++.... +.+++
T Consensus        91 -PTl~~f~~g~~~G~~~~~~~g~~~~~~L~~~l~~~l~~~~~------~~P~~-~p~l~~it~~~l~~~l~~~~~~~val  162 (519)
T 3t58_A           91 -PTVRFFQAFTKNGSGATLPGAGANVQTLRMRLIDALESHRD------TWPPA-CPPLEPAKLNDIDGFFTRNKADYLAL  162 (519)
T ss_dssp             -SEEEEECTTCCSCCCEEECCSSCCHHHHHHHHHHHHTTCCS------CCCTT-CCCCSBCCHHHHTTGGGSCCCSEEEE
T ss_pred             -CEEEEEcCcccCCCceeEecCCCCHHHHHHHHHHHHhhccc------cCCCC-CCccCcCCHHHHHHHhccCCCCeEEE
Confidence             99999985321   233456779999999999999864321      11111 12344456677877765443 56777


Q ss_pred             EEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc-ccCCCCCCceEEEEeCCCcccCceeccC-CCCHHHHH
Q 013976          303 EIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-HRAKSDGFPTILFFPAGNKSFDPINVDV-DRTVVALY  380 (432)
Q Consensus       303 ~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-~~~~i~~~P~i~~~~~g~~~~~~~~y~g-~~~~~~l~  380 (432)
                      +|....       .....+++..+.....+.+..++...... .+|+|+.+|+++++.++.+..   .+.. ..+...+.
T Consensus       163 lF~~~~-------s~~~~~~~ldl~~~~~v~v~~v~~~~~~l~~kfgV~~~Pslvl~~~nGk~~---~~~v~~~~r~~~~  232 (519)
T 3t58_A          163 VFERED-------SYLGREVTLDLSQYHAVAVRRVLNTESDLVNKFGVTDFPSCYLLLRNGSVS---RVPVLVESRSFYT  232 (519)
T ss_dssp             EEECTT-------CCHHHHHHHHTTTCTTEEEEEEETTCHHHHHHHTCCCSSEEEEEETTSCEE---ECCCSSCSHHHHH
T ss_pred             EecCCc-------hHHHHHHHHHhhccCCeeEEEecCchHHHHHHcCCCCCCeEEEEeCCCcee---ecccccccHHHHH
Confidence            777654       23567788888876689998887554444 789999999999997766531   2332 33446677


Q ss_pred             HHHHhcCCCCC
Q 013976          381 KFLKKNASIPF  391 (432)
Q Consensus       381 ~fi~~~~~~~~  391 (432)
                      .+|+.......
T Consensus       233 ~~l~~l~~~~~  243 (519)
T 3t58_A          233 SYLRGLPGLTR  243 (519)
T ss_dssp             HHHTTSTTCCC
T ss_pred             HHHHHccCCCC
Confidence            78776555443

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=99.57  E-value=2.7e-15  Score=117.32  Aligned_cols=99  Identities=19%  Similarity=0.407  Sum_probs=82.9

Q ss_pred             ceEEEec-ccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEE
Q 013976          280 DVKIVVG-NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTIL  356 (432)
Q Consensus       280 ~v~~l~~-~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~  356 (432)
                      .+..++. +.|++ +.+.+++++|.||++||++|+.+.|.|.+++..+.+   +.|+.+|++.+..  .++++.++|+++
T Consensus        13 ~~~~~~~~~~~~~-~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~---v~~~~vd~~~~~~l~~~~~v~~~Pt~~   88 (114)
T 2oe3_A           13 SITKLTNLTEFRN-LIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPD---VRFVKCDVDESPDIAKECEVTAMPTFV   88 (114)
T ss_dssp             GSCBCCSHHHHHH-HHHHCSEEEEEEECTTCHHHHHTHHHHHHHHHHCTT---SEEEEEETTTCHHHHHHTTCCSBSEEE
T ss_pred             heeecCCHHHHHH-HHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC---CEEEEEECCCCHHHHHHCCCCcccEEE
Confidence            3455555 44555 446778999999999999999999999999999865   9999999998866  689999999999


Q ss_pred             EEeCCCcccCceeccCCCCHHHHHHHHHhc
Q 013976          357 FFPAGNKSFDPINVDVDRTVVALYKFLKKN  386 (432)
Q Consensus       357 ~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~  386 (432)
                      +|++|+.+.   .+.|.. .+.|.++|+++
T Consensus        89 ~~~~G~~~~---~~~G~~-~~~l~~~l~~~  114 (114)
T 2oe3_A           89 LGKDGQLIG---KIIGAN-PTALEKGIKDL  114 (114)
T ss_dssp             EEETTEEEE---EEESSC-HHHHHHHHHTC
T ss_pred             EEeCCeEEE---EEeCCC-HHHHHHHHHhC
Confidence            999887654   788877 99999999763

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=99.57  E-value=1.1e-14  Score=118.52  Aligned_cols=102  Identities=15%  Similarity=0.188  Sum_probs=83.4

Q ss_pred             ecccchhhhhc-CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEEEeCC
Q 013976          285 VGNNFDEIVLD-ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAG  361 (432)
Q Consensus       285 ~~~~~~~~~~~-~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~~~g  361 (432)
                      +.++|++.+.+ .+++++|.|||+||++|+.+.|.|.+++..+.+  ++.|+.+|++.+..  .+++|.++|++++|++|
T Consensus        10 ~~~~~~~~v~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~--~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~~G   87 (142)
T 1qgv_A           10 NGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKN--FAVIYLVDITEVPDFNKMYELYDPCTVMFFFRN   87 (142)
T ss_dssp             SHHHHHHHHHTCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTT--TEEEEEEETTTCCTTTTSSCSCSSCEEEEEETT
T ss_pred             CHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC--CeEEEEEccccCHHHHHHcCCCCCCEEEEEECC
Confidence            45788877765 678999999999999999999999999999976  69999999998876  68999999999999988


Q ss_pred             CcccC------ceeccCCC-CHHHHHHHHHhcCC
Q 013976          362 NKSFD------PINVDVDR-TVVALYKFLKKNAS  388 (432)
Q Consensus       362 ~~~~~------~~~y~g~~-~~~~l~~fi~~~~~  388 (432)
                      +.+..      ...+.|.. +.+.+.++|++...
T Consensus        88 ~~v~~~~g~~~~~~~~g~~~~~~~l~~~i~~~~~  121 (142)
T 1qgv_A           88 KHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYR  121 (142)
T ss_dssp             EEEEEECC------CCSCCSCHHHHHHHHHHHHH
T ss_pred             cEEEEecCCCCcceeeeecCcHHHHHHHHHHHHH
Confidence            76520      01244544 48999999988764

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=99.57  E-value=1.5e-14  Score=119.55  Aligned_cols=108  Identities=22%  Similarity=0.353  Sum_probs=90.5

Q ss_pred             CCceEEEe-cccchhhhhcC-CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCc
Q 013976          278 DGDVKIVV-GNNFDEIVLDE-SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFP  353 (432)
Q Consensus       278 ~~~v~~l~-~~~~~~~~~~~-~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P  353 (432)
                      .+.+..++ .++|++.+.+. +++++|.||++||++|+.+.|.|.+++..+.   ++.|+.+|++.+..  .+++|.++|
T Consensus        11 ~~~v~~l~~~~~~~~~~~~~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~---~v~~~~vd~~~~~~l~~~~~v~~~P   87 (153)
T 2wz9_A           11 VAAVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELP---QVSFVKLEAEGVPEVSEKYEISSVP   87 (153)
T ss_dssp             -CCSEEECSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTSHHHHHHTTCCSSS
T ss_pred             cCCeEEcCCHHHHHHHHHhcCCCeEEEEEECCCCHhHHHHHHHHHHHHHHcC---CeEEEEEECCCCHHHHHHcCCCCCC
Confidence            34577787 48898877443 7899999999999999999999999999974   59999999998876  689999999


Q ss_pred             eEEEEeCCCcccCceeccCCCCHHHHHHHHHhcCCCCCc
Q 013976          354 TILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPFK  392 (432)
Q Consensus       354 ~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~~~  392 (432)
                      ++++|.+|+.+.   .+.| .+.+.|.+||++.+.....
T Consensus        88 t~~~~~~G~~~~---~~~G-~~~~~l~~~i~~~l~~~~~  122 (153)
T 2wz9_A           88 TFLFFKNSQKID---RLDG-AHAPELTKKVQRHASSGSF  122 (153)
T ss_dssp             EEEEEETTEEEE---EEES-SCHHHHHHHHHHHSCTTSS
T ss_pred             EEEEEECCEEEE---EEeC-CCHHHHHHHHHHHhccccC
Confidence            999999887653   5667 5788999999999876544

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=99.56  E-value=3.2e-15  Score=116.15  Aligned_cols=100  Identities=14%  Similarity=0.226  Sum_probs=84.2

Q ss_pred             EEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEEEe
Q 013976          282 KIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFP  359 (432)
Q Consensus       282 ~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~~  359 (432)
                      ..++.++| +.+ ..+++++|.||++||++|+.+.|.|.+++..+.   ++.|+.+|++.+..  .++++.++|++++|+
T Consensus         6 ~~~~~~~f-~~~-~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~---~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~   80 (110)
T 2l6c_A            6 DITTEAGM-AHF-EGLSDAIVFFHKNLCPHCKNMEKVLDKFGARAP---QVAISSVDSEARPELMKELGFERVPTLVFIR   80 (110)
T ss_dssp             BCGGGCSH-HHH-TTCSEEEEEEECSSCSTHHHHHHHHHHHHTTCT---TSCEEEEEGGGCHHHHHHTTCCSSCEEEEEE
T ss_pred             ecCCHHHH-HHH-HcCCCEEEEEECCCCHhHHHHHHHHHHHHHHCC---CcEEEEEcCcCCHHHHHHcCCcccCEEEEEE
Confidence            44667889 545 456899999999999999999999999998775   58999999987766  689999999999999


Q ss_pred             CCCcccCceeccCCCCHHHHHHHHHhcCCC
Q 013976          360 AGNKSFDPINVDVDRTVVALYKFLKKNASI  389 (432)
Q Consensus       360 ~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~  389 (432)
                      +|+.+.   ++.|..+.+.|.++|.+....
T Consensus        81 ~G~~v~---~~~G~~~~~~l~~~~~~~~~~  107 (110)
T 2l6c_A           81 DGKVAK---VFSGIMNPRELQALYASIHHH  107 (110)
T ss_dssp             SSSEEE---EEESCCCHHHHHHHHHTC---
T ss_pred             CCEEEE---EEcCCCCHHHHHHHHHHHhhh
Confidence            988764   788999999999999988653

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=99.55  E-value=1.2e-14  Score=115.96  Aligned_cols=94  Identities=15%  Similarity=0.144  Sum_probs=81.6

Q ss_pred             hcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEe--CCCccc--ccCCCCCCceEEEEe-CCCcccCce
Q 013976          294 LDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD--GTTNEH--HRAKSDGFPTILFFP-AGNKSFDPI  368 (432)
Q Consensus       294 ~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id--~~~~~~--~~~~i~~~P~i~~~~-~g~~~~~~~  368 (432)
                      ...+++++|.||++||++|+.+.|.|.+++..++.  ++.|+.+|  ++.+..  ..+++.++|++++|. +|+.+.   
T Consensus        23 ~~~~k~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~--~v~~~~v~~~~d~~~~~~~~~~v~~~Pt~~~~~~~G~~~~---   97 (126)
T 2l57_A           23 AKEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREG--KFNIYYARLEEEKNIDLAYKYDANIVPTTVFLDKEGNKFY---   97 (126)
T ss_dssp             CCSSSCEEEEEECSSCHHHHHHHHHHHHHHHHSSS--SCEEEEEETTSSHHHHHHHHTTCCSSSEEEEECTTCCEEE---
T ss_pred             HhCCCcEEEEEECCCCccHHHHHHHHHHHHHHhcC--CeEEEEEeCCCCchHHHHHHcCCcceeEEEEECCCCCEEE---
Confidence            35568999999999999999999999999999974  79999999  776655  689999999999998 776553   


Q ss_pred             eccCCCCHHHHHHHHHhcCCCCCc
Q 013976          369 NVDVDRTVVALYKFLKKNASIPFK  392 (432)
Q Consensus       369 ~y~g~~~~~~l~~fi~~~~~~~~~  392 (432)
                      .+.|..+.+.|.++|++++.....
T Consensus        98 ~~~G~~~~~~l~~~l~~~~~~~~~  121 (126)
T 2l57_A           98 VHQGLMRKNNIETILNSLGVKEGH  121 (126)
T ss_dssp             EEESCCCHHHHHHHHHHHCCCCCC
T ss_pred             EecCCCCHHHHHHHHHHHhccccc
Confidence            688999999999999999876553

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=99.55  E-value=5.7e-15  Score=116.84  Aligned_cols=103  Identities=22%  Similarity=0.502  Sum_probs=88.1

Q ss_pred             CceEEEec-ccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceE
Q 013976          279 GDVKIVVG-NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTI  355 (432)
Q Consensus       279 ~~v~~l~~-~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i  355 (432)
                      +.+..++. ++|++.+ ..+++++|+||++||++|+.+.|.|.+++..+.+. ++.|+.+|++.+..  ..+++.++|++
T Consensus        15 ~~~~~i~~~~~f~~~l-~~~k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~~-~v~~~~vd~d~~~~~~~~~~v~~~Pt~   92 (121)
T 2j23_A           15 GSVQVISSYDQFKQVT-GGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGD-KVGFYKVDVDEQSQIAQEVGIRAMPTF   92 (121)
T ss_dssp             CCEEECCSHHHHHHHH-SSSSCEEEEEECTTCSTHHHHHHHHHHHHTSTHHH-HSEEEEEETTTCHHHHHHHTCCSSSEE
T ss_pred             cceEEcCCHHHHHHHH-cCCCEEEEEEECCCCHhHHHHHHHHHHHHHHCcCC-cEEEEEEECcCCHHHHHHcCCCcccEE
Confidence            34666666 8888877 67789999999999999999999999999887752 49999999998876  68999999999


Q ss_pred             EEEeCCCcccCceeccCCCCHHHHHHHHHhcC
Q 013976          356 LFFPAGNKSFDPINVDVDRTVVALYKFLKKNA  387 (432)
Q Consensus       356 ~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  387 (432)
                      ++|++|+.+.   .+.|. +.+.|.+||++.+
T Consensus        93 ~~~~~G~~~~---~~~G~-~~~~l~~~l~~~l  120 (121)
T 2j23_A           93 VFFKNGQKID---TVVGA-DPSKLQAAITQHS  120 (121)
T ss_dssp             EEEETTEEEE---EEESS-CHHHHHHHHHHHT
T ss_pred             EEEECCeEEe---eEcCC-CHHHHHHHHHHhh
Confidence            9999887654   67887 9999999999865

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=99.55  E-value=2e-15  Score=122.01  Aligned_cols=103  Identities=17%  Similarity=0.289  Sum_probs=87.3

Q ss_pred             CCceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeC---------CCccc--cc
Q 013976          278 DGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG---------TTNEH--HR  346 (432)
Q Consensus       278 ~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~---------~~~~~--~~  346 (432)
                      ++.+..++..+|++.+..   +++|.||++||++|+.+.|.|.+++..++    +.|+.+|+         +.+..  .+
T Consensus        15 ~~~v~~l~~~~~~~~~~~---~vlv~F~a~wC~~C~~~~p~l~~l~~~~~----v~~~~vd~~~~~~~~~~d~~~~l~~~   87 (135)
T 3emx_A           15 DGRLIYITPEEFRQLLQG---DAILAVYSKTCPHCHRDWPQLIQASKEVD----VPIVMFIWGSLIGERELSAARLEMNK   87 (135)
T ss_dssp             TTEEEECCHHHHHHHHTS---SEEEEEEETTCHHHHHHHHHHHHHHTTCC----SCEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred             cCceeecCHHHHHHHhCC---cEEEEEECCcCHhhhHhChhHHHHHHHCC----CEEEEEECCCchhhhhhhhhHHHHHH
Confidence            466888999999998733   99999999999999999999999988774    88899998         33333  57


Q ss_pred             CCCCCCceEEEEeCCCcccCceeccCCCCHHHHHHHHHhcCCCC
Q 013976          347 AKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIP  390 (432)
Q Consensus       347 ~~i~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~  390 (432)
                      ++|.++||+++|++|+.+.   .+.|..+.+.+.++++++.+..
T Consensus        88 ~~v~~~Pt~~~~~~G~~v~---~~~G~~~~~~~~~~i~~~~~~~  128 (135)
T 3emx_A           88 AGVEGTPTLVFYKEGRIVD---KLVGATPWSLKVEKAREIYGGE  128 (135)
T ss_dssp             HTCCSSSEEEEEETTEEEE---EEESCCCHHHHHHHHHHHC---
T ss_pred             cCCceeCeEEEEcCCEEEE---EEeCCCCHHHHHHHHHHHhCCC
Confidence            8999999999999988765   8899999999999999988653

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=99.31  E-value=4.9e-16  Score=119.72  Aligned_cols=101  Identities=30%  Similarity=0.534  Sum_probs=89.5

Q ss_pred             eEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEEE
Q 013976          281 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFF  358 (432)
Q Consensus       281 v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~  358 (432)
                      +..++.++|.+.+...+++++|.||++||++|+.+.+.+.+++..+.+  ++.++.+|++.+..  ..+++.++|++++|
T Consensus         3 v~~l~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~   80 (106)
T 2yj7_A            3 VIEVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEG--KVKVVKVNVDENPNTAAQYGIRSIPTLLLF   80 (106)
Confidence            567888999987777789999999999999999999999999999986  69999999988776  68999999999999


Q ss_pred             eCCCcccCceeccCCCCHHHHHHHHHhc
Q 013976          359 PAGNKSFDPINVDVDRTVVALYKFLKKN  386 (432)
Q Consensus       359 ~~g~~~~~~~~y~g~~~~~~l~~fi~~~  386 (432)
                      ++|+.+.   .+.|..+.+.|.+||++.
T Consensus        81 ~~g~~~~---~~~g~~~~~~l~~~l~~~  105 (106)
T 2yj7_A           81 KNGQVVD---RLVGAQPKEALKERIDKH  105 (106)
Confidence            8887654   788989999999999865

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=99.54  E-value=1.1e-14  Score=114.68  Aligned_cols=104  Identities=15%  Similarity=0.233  Sum_probs=84.9

Q ss_pred             ceEEE--ecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceE
Q 013976          280 DVKIV--VGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTI  355 (432)
Q Consensus       280 ~v~~l--~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i  355 (432)
                      .+..+  +..+|.+.+.+.+++++|.||++||++|+.+.|.|.+++..+ .  ++.|+.+|++.+..  .+++|.++|++
T Consensus         4 ~v~~~~g~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~l~~~~-~--~v~~~~vd~~~~~~~~~~~~i~~~Pt~   80 (118)
T 2f51_A            4 PIVHFNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEAN-K--DVTFIKVDVDKNGNAADAYGVSSIPAL   80 (118)
T ss_dssp             CSEEECSCHHHHHHHHHHCSSCEEEEEECTTCHHHHHHHHHHHHHHHHC-T--TSEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             cceEecCCHHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHC-C--CeEEEEEECCCCHHHHHhcCCCCCCEE
Confidence            35667  457888767667899999999999999999999999999998 3  69999999998876  68999999999


Q ss_pred             EEEeC----CCcccCceeccCCCCHHHHHHHHHhcCCCC
Q 013976          356 LFFPA----GNKSFDPINVDVDRTVVALYKFLKKNASIP  390 (432)
Q Consensus       356 ~~~~~----g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~  390 (432)
                      ++|.+    |+.+.   ++.|.. .+.|.+.|.++....
T Consensus        81 ~~~~~~~~~G~~~~---~~~G~~-~~~l~~~~~~~~~~~  115 (118)
T 2f51_A           81 FFVKKEGNEIKTLD---QFVGAD-VSRIKADIEKFKHHH  115 (118)
T ss_dssp             EEEEEETTEEEEEE---EEESCC-HHHHHHHHHHHC---
T ss_pred             EEEeCCCCcceEEE---eecCCC-HHHHHHHHHHhhhcc
Confidence            99987    65543   677754 556999999887543

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=99.54  E-value=8.1e-15  Score=114.36  Aligned_cols=102  Identities=21%  Similarity=0.374  Sum_probs=86.8

Q ss_pred             CceEEE-ecccchhhhhc---CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCC
Q 013976          279 GDVKIV-VGNNFDEIVLD---ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGF  352 (432)
Q Consensus       279 ~~v~~l-~~~~~~~~~~~---~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~  352 (432)
                      +.+..+ +.++|++.+..   .+++++|+||++||++|+.+.+.|.+++..+.   ++.|+.+|++.+..  ..+++.++
T Consensus         4 ~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~---~v~~~~v~~~~~~~~~~~~~v~~~   80 (113)
T 1ti3_A            4 GQVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP---NVTFLKVDVDELKAVAEEWNVEAM   80 (113)
T ss_dssp             CCEEEECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS---SEEEEEEETTTCHHHHHHHHCSST
T ss_pred             CceeEeccHHHHHHHHHHhhhcCCeEEEEEECCCCHHHHHHHHHHHHHHHhCC---CcEEEEEEccccHHHHHhCCCCcc
Confidence            456677 56889988754   47899999999999999999999999999986   59999999998765  68999999


Q ss_pred             ceEEEEeCCCcccCceeccCCCCHHHHHHHHHhcC
Q 013976          353 PTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA  387 (432)
Q Consensus       353 P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  387 (432)
                      |++++|++|+.+.   .+.| .+.+.|.++|++++
T Consensus        81 Pt~~~~~~G~~~~---~~~g-~~~~~l~~~l~~~~  111 (113)
T 1ti3_A           81 PTFIFLKDGKLVD---KTVG-ADKDGLPTLVAKHA  111 (113)
T ss_dssp             TEEEEEETTEEEE---EEEC-CCTTHHHHHHHHHH
T ss_pred             cEEEEEeCCEEEE---EEec-CCHHHHHHHHHHhh
Confidence            9999999887654   5677 68899999998865

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=99.54  E-value=1.7e-14  Score=117.14  Aligned_cols=105  Identities=20%  Similarity=0.333  Sum_probs=89.4

Q ss_pred             CCceEEEe-cccchhhhh---cCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCC
Q 013976          278 DGDVKIVV-GNNFDEIVL---DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDG  351 (432)
Q Consensus       278 ~~~v~~l~-~~~~~~~~~---~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~  351 (432)
                      .+.+..++ .++|++.+.   ..+++++|.||++||++|+.+.|.|.+++..+.   ++.|+.+|++.+..  ..++|.+
T Consensus        23 ~~~~~~i~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~---~v~~~~v~~~~~~~~~~~~~v~~   99 (139)
T 3d22_A           23 GGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYP---SLMFLVIDVDELSDFSASWEIKA   99 (139)
T ss_dssp             CTTCEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTSHHHHHHTTCCE
T ss_pred             CCcEEEeCCHHHHHHHHHHHhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC---CCEEEEEeCcccHHHHHHcCCCc
Confidence            44566665 689998774   347899999999999999999999999999984   49999999998876  6899999


Q ss_pred             CceEEEEeCCCcccCceeccCCCCHHHHHHHHHhcCCC
Q 013976          352 FPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASI  389 (432)
Q Consensus       352 ~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~  389 (432)
                      +|+++++++|+.+.   .+.|. +.+.|.++|.+.+..
T Consensus       100 ~Pt~~~~~~G~~~~---~~~G~-~~~~l~~~l~~~~~~  133 (139)
T 3d22_A          100 TPTFFFLRDGQQVD---KLVGA-NKPELHKKITAILDS  133 (139)
T ss_dssp             ESEEEEEETTEEEE---EEESC-CHHHHHHHHHHHHHT
T ss_pred             ccEEEEEcCCeEEE---EEeCC-CHHHHHHHHHHHhcc
Confidence            99999999887654   67777 899999999988754

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=99.53  E-value=1.6e-14  Score=113.57  Aligned_cols=103  Identities=22%  Similarity=0.397  Sum_probs=87.8

Q ss_pred             CceEEE-ecccchhhhhc---CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCC
Q 013976          279 GDVKIV-VGNNFDEIVLD---ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGF  352 (432)
Q Consensus       279 ~~v~~l-~~~~~~~~~~~---~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~  352 (432)
                      +.+..+ +.++|++.+..   .+++++|.||++||++|+.+.|.|.+++..+.   ++.|+.+|++.+..  ..+++.++
T Consensus         6 ~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~---~~~~~~v~~~~~~~~~~~~~v~~~   82 (118)
T 2vm1_A            6 GAVIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFP---GAIFLKVDVDELKDVAEAYNVEAM   82 (118)
T ss_dssp             CCEEECCSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTSHHHHHHTTCCSB
T ss_pred             CceEEecCHHHHHHHHHhcccCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC---CcEEEEEEcccCHHHHHHcCCCcC
Confidence            446666 46889887754   47899999999999999999999999999986   49999999998765  68999999


Q ss_pred             ceEEEEeCCCcccCceeccCCCCHHHHHHHHHhcCC
Q 013976          353 PTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNAS  388 (432)
Q Consensus       353 P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  388 (432)
                      |++++|++|+.+.   .+.| .+.+.|.++|.+++.
T Consensus        83 Pt~~~~~~g~~~~---~~~g-~~~~~l~~~l~~~~~  114 (118)
T 2vm1_A           83 PTFLFIKDGEKVD---SVVG-GRKDDIHTKIVALMG  114 (118)
T ss_dssp             SEEEEEETTEEEE---EEES-CCHHHHHHHHHHHHC
T ss_pred             cEEEEEeCCeEEE---EecC-CCHHHHHHHHHHHhc
Confidence            9999999887654   6777 689999999998865

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A

Probab=99.53  E-value=4.5e-14  Score=124.35  Aligned_cols=103  Identities=20%  Similarity=0.350  Sum_probs=89.3

Q ss_pred             CceEEEecccchhhhhcCCCcEEEEEeC--CCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCC-----ccc--ccCCC
Q 013976          279 GDVKIVVGNNFDEIVLDESKDVLLEIYA--PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT-----NEH--HRAKS  349 (432)
Q Consensus       279 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~--~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~-----~~~--~~~~i  349 (432)
                      ..|..|+..+|++.+ +.++++||.||+  |||+    +.|.|.++|..+.+.+++.|+.|||++     +..  .+++|
T Consensus         5 ~~v~~Lt~~nF~~~i-~~~~~vlV~FyA~~pWCg----l~P~~e~lA~~~~~~~~v~~akVDvd~~g~~~~~~l~~~~~V   79 (240)
T 2qc7_A            5 KGALPLDTVTFYKVI-PKSKFVLVKFDTQYPYGE----KQDEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKL   79 (240)
T ss_dssp             TTCEECCTTHHHHHG-GGCSEEEEEECCSSCCSH----HHHHHHHHHHHHTTCTTEEEEEECCCCSSSCCSHHHHHHTTC
T ss_pred             CCceECCHHHHHHHH-cCCCCEEEEEeCCCCCCc----chHHHHHHHHHhcCCCCeEEEEEeCCcccchhhHHHHHHcCC
Confidence            457889999999965 667899999999  9999    999999999999865579999999654     443  68999


Q ss_pred             C--CCceEEEEeCCCcccCceeccCCCCHHHHHHHHHhcC
Q 013976          350 D--GFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA  387 (432)
Q Consensus       350 ~--~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  387 (432)
                      .  ++||+++|++|... .+..|.|.++.+.|.+||++++
T Consensus        80 ~~~~~PTl~~f~~G~~~-~~~~y~G~~~~~~L~~fi~~~~  118 (240)
T 2qc7_A           80 DKESYPVFYLFRDGDFE-NPVPYTGAVKVGAIQRWLKGQG  118 (240)
T ss_dssp             CGGGCSEEEEEETTCSS-CCEECCSCSCHHHHHHHHHHTT
T ss_pred             CCCCCCEEEEEeCCCcC-cceeecCCCCHHHHHHHHHHhc
Confidence            9  99999999999721 3568999999999999999997

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=99.52  E-value=1.2e-14  Score=114.36  Aligned_cols=97  Identities=13%  Similarity=0.214  Sum_probs=79.8

Q ss_pred             eEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--------ccCCCCCC
Q 013976          281 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--------HRAKSDGF  352 (432)
Q Consensus       281 v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--------~~~~i~~~  352 (432)
                      +..++.++|.+.+ ..+++++|+||++||++|+.+.|.|.+++..+..  .+.++  |++....        .+++|.++
T Consensus        14 ~~~~~~~~~~~~~-~~~~~~~v~f~a~wC~~C~~~~p~l~~~~~~~~~--~v~~~--~~~~~~~~~~~~~~~~~~~i~~~   88 (118)
T 1zma_A           14 LEVTTVVRAQEAL-DKKETATFFIGRKTCPYCRKFAGTLSGVVAETKA--HIYFI--NSEEPSQLNDLQAFRSRYGIPTV   88 (118)
T ss_dssp             SEECCHHHHHHHH-HTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCC--CCEEE--ETTCGGGHHHHHHHHHHHTCCSS
T ss_pred             hhcCCHHHHHHHH-hCCCeEEEEEECCCCccHHHHHHHHHHHHHhcCC--eEEEE--ECCCcCcHHHHHHHHHHcCCCCC
Confidence            6778889999876 5578999999999999999999999999998864  45555  4443321        46899999


Q ss_pred             ceEEEEeCCCcccCceeccCCCCHHHHHHHHHh
Q 013976          353 PTILFFPAGNKSFDPINVDVDRTVVALYKFLKK  385 (432)
Q Consensus       353 P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~  385 (432)
                      |++++|++|+.+.   ++.|..+.+.|.+||++
T Consensus        89 Pt~~~~~~G~~~~---~~~G~~~~~~l~~~l~k  118 (118)
T 1zma_A           89 PGFVHITDGQINV---RCDSSMSAQEIKDFAGL  118 (118)
T ss_dssp             CEEEEEETTEEEE---ECCTTCCHHHHHHHHTC
T ss_pred             CeEEEEECCEEEE---EecCCCCHHHHHHHhhC
Confidence            9999999887654   78999999999999863

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=99.50  E-value=1.7e-14  Score=116.10  Aligned_cols=104  Identities=11%  Similarity=0.241  Sum_probs=85.8

Q ss_pred             CCceEEEec-ccchhhhhcC-CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCc
Q 013976          278 DGDVKIVVG-NNFDEIVLDE-SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFP  353 (432)
Q Consensus       278 ~~~v~~l~~-~~~~~~~~~~-~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P  353 (432)
                      .+.+..++. ++|++.+... ++++||.||++||++|+.+.|.|.+++..+    ++.|+.+|++.+..  .+++|.++|
T Consensus        19 ~~~v~~l~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~----~v~~~~vd~~~~~~l~~~~~v~~~P   94 (133)
T 3cxg_A           19 QSIYIELKNTGSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYY----YVTLVDIDVDIHPKLNDQHNIKALP   94 (133)
T ss_dssp             TEEEEECCCTTHHHHHHTC-CCSEEEEEEECTTCHHHHHTHHHHHGGGGTE----ECEEEEEETTTCHHHHHHTTCCSSS
T ss_pred             CccEEEecChhHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHhc----CEEEEEEeccchHHHHHhcCCCCCC
Confidence            456777775 8888877443 479999999999999999999999988766    48999999998876  689999999


Q ss_pred             eEEEEe--CCC--cccCceeccCCCCHHHHHHHHHhcCCC
Q 013976          354 TILFFP--AGN--KSFDPINVDVDRTVVALYKFLKKNASI  389 (432)
Q Consensus       354 ~i~~~~--~g~--~~~~~~~y~g~~~~~~l~~fi~~~~~~  389 (432)
                      ++++|+  +|+  .+.   .+.|. +.+.|.++|++.+..
T Consensus        95 t~~~~~~~~g~g~~~~---~~~G~-~~~~l~~~l~~~l~~  130 (133)
T 3cxg_A           95 TFEFYFNLNNEWVLVH---TVEGA-NQNDIEKAFQKYCLE  130 (133)
T ss_dssp             EEEEEEEETTEEEEEE---EEESC-CHHHHHHHHHHHSEE
T ss_pred             EEEEEEecCCCeEEEE---EEcCC-CHHHHHHHHHHHHHh
Confidence            999996  776  332   67776 899999999998753

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*

Probab=99.49  E-value=8e-15  Score=140.29  Aligned_cols=101  Identities=16%  Similarity=0.275  Sum_probs=84.6

Q ss_pred             CCceEEEecccchhhhhcC-CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCC------CEEEEEEeCCCccc--ccCC
Q 013976          278 DGDVKIVVGNNFDEIVLDE-SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVD------SIVIAKMDGTTNEH--HRAK  348 (432)
Q Consensus       278 ~~~v~~l~~~~~~~~~~~~-~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~------~~~~~~id~~~~~~--~~~~  348 (432)
                      .+.|..|+..+|++.+... .+++||.|||+||++|+.+.|.|.++++.+....      .+.|+.||++.+..  .+++
T Consensus        22 ~~~V~~Lt~~~F~~~l~~~~~k~VlV~FyA~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~~~~la~~y~  101 (470)
T 3qcp_A           22 DSSVVDLSGDDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASEVDLCRKYD  101 (470)
T ss_dssp             CTTEEECSCSCGGGTCTTGGGSCEEEEEECTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTTCHHHHHHTT
T ss_pred             CCCcEECCHHHHHHHHHhCCCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCCCHHHHHHcC
Confidence            5679999999999987543 4799999999999999999999999999997532      49999999999876  6899


Q ss_pred             CCCCceEEEEeCCCcccCceeccCCCCHHHH
Q 013976          349 SDGFPTILFFPAGNKSFDPINVDVDRTVVAL  379 (432)
Q Consensus       349 i~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l  379 (432)
                      |.++||+++|.+|... .+..|.|.++.+.|
T Consensus       102 V~~~PTlilf~~gg~~-~~~~y~G~r~~e~L  131 (470)
T 3qcp_A          102 INFVPRLFFFYPRDSC-RSNEECGTSSLEHV  131 (470)
T ss_dssp             CCSSCEEEEEEESSCC-CTTSCCCCCCEEEE
T ss_pred             CCccCeEEEEECCCce-EEEEeeCCCCHHHH
Confidence            9999999999776654 56688886555443

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A

Probab=99.48  E-value=1.7e-13  Score=110.19  Aligned_cols=106  Identities=11%  Similarity=0.129  Sum_probs=90.8

Q ss_pred             ceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCC--CceE
Q 013976          280 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDG--FPTI  355 (432)
Q Consensus       280 ~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~--~P~i  355 (432)
                      .|..++..+|++.+ ....+++|+||++ |++|+.+.|.++++|+.|++  ++.|+++|++++..  ..|+|.+  +|++
T Consensus         7 lv~~~t~~~f~~~~-~~~~pv~v~f~a~-~~~c~~~~p~l~~~A~~~~g--k~~f~~vd~d~~~~~a~~~gi~~~~iPtl   82 (133)
T 2djk_A            7 LIGEIGPETYSDYM-SAGIPLAYIFAET-AEERKELSDKLKPIAEAQRG--VINFGTIDAKAFGAHAGNLNLKTDKFPAF   82 (133)
T ss_dssp             CSEECCHHHHHHHH-HTTSCEEEEECSC-SSSHHHHHHHHHHHHHSSTT--TSEEEEECTTTTGGGTTTTTCCSSSSSEE
T ss_pred             ceeccChHHHHHHh-cCCCCEEEEEecC-hhhHHHHHHHHHHHHHHhCC--eEEEEEEchHHhHHHHHHcCCCcccCCEE
Confidence            36788999999874 6678999999999 89999999999999999987  69999999998876  6899999  9999


Q ss_pred             EEEeC--CCcccCceecc--CCCCHHHHHHHHHhcCCCCCcc
Q 013976          356 LFFPA--GNKSFDPINVD--VDRTVVALYKFLKKNASIPFKI  393 (432)
Q Consensus       356 ~~~~~--g~~~~~~~~y~--g~~~~~~l~~fi~~~~~~~~~~  393 (432)
                      ++|.+  |.+.    .+.  |..+.+.|.+||++++..+...
T Consensus        83 ~i~~~~~g~~~----~~~~~g~~~~~~l~~fi~~~l~Gkl~p  120 (133)
T 2djk_A           83 AIQEVAKNQKF----PFDQEKEITFEAIKAFVDDFVAGKIEP  120 (133)
T ss_dssp             EEECTTTCCBC----CCCSSSCCCHHHHHHHHHHHHHTCCCC
T ss_pred             EEEecCcCccc----CCCCccccCHHHHHHHHHHHHcCCcCc
Confidence            99987  5442    444  9999999999999998655543

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=99.45  E-value=3.3e-13  Score=132.62  Aligned_cols=114  Identities=25%  Similarity=0.397  Sum_probs=95.7

Q ss_pred             CCceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcC-CCCEEEEEEeCCC--ccc--ccCCCCCC
Q 013976          278 DGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRG-VDSIVIAKMDGTT--NEH--HRAKSDGF  352 (432)
Q Consensus       278 ~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~-~~~~~~~~id~~~--~~~--~~~~i~~~  352 (432)
                      ...|..|++++|+..+.+.+++++|.|||+||++|+.+.|.|.++++.+.+ ...+.|+.|||+.  +..  .+++|.++
T Consensus        11 ~~~V~~Lt~~~f~~~v~~~~k~vlV~FyA~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~d~~~~l~~~~~V~~~   90 (519)
T 3t58_A           11 SDPLTLLDADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREFNIAGF   90 (519)
T ss_dssp             TSSSEEECTTTHHHHHSSCSSEEEEEEECTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTSGGGHHHHHHTTCCSB
T ss_pred             CCCcEECChHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCccccHHHHHHcCCccc
Confidence            456999999999998877789999999999999999999999999999986 3469999999975  333  68999999


Q ss_pred             ceEEEEeCCCcccC-ceeccCCCCHHHHHHHHHhcCCCCC
Q 013976          353 PTILFFPAGNKSFD-PINVDVDRTVVALYKFLKKNASIPF  391 (432)
Q Consensus       353 P~i~~~~~g~~~~~-~~~y~g~~~~~~l~~fi~~~~~~~~  391 (432)
                      |++++|.+|.+..+ ...+.|..+.+.|.++|.+.+....
T Consensus        91 PTl~~f~~g~~~G~~~~~~~g~~~~~~L~~~l~~~l~~~~  130 (519)
T 3t58_A           91 PTVRFFQAFTKNGSGATLPGAGANVQTLRMRLIDALESHR  130 (519)
T ss_dssp             SEEEEECTTCCSCCCEEECCSSCCHHHHHHHHHHHHTTCC
T ss_pred             CEEEEEcCcccCCCceeEecCCCCHHHHHHHHHHHHhhcc
Confidence            99999997654211 1356778999999999999986543

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=99.42  E-value=1.6e-13  Score=109.83  Aligned_cols=103  Identities=20%  Similarity=0.349  Sum_probs=84.8

Q ss_pred             Eecccchhhhh---cCCCcEEEEEeCCCChhhhhhHHHH---HHHHHHhcCCCCEEEEEEeCCCc--cc--ccCCCCCCc
Q 013976          284 VVGNNFDEIVL---DESKDVLLEIYAPWCGHCQAFEPTY---NKLAKHLRGVDSIVIAKMDGTTN--EH--HRAKSDGFP  353 (432)
Q Consensus       284 l~~~~~~~~~~---~~~~~~lv~f~~~~c~~c~~~~~~~---~~la~~~~~~~~~~~~~id~~~~--~~--~~~~i~~~P  353 (432)
                      ++..+|++.+.   ..+++++|.||++||++|+.+.|.+   ..++..+..  ++.++.+|++..  ..  ..+++.++|
T Consensus        11 ~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~~~v~~~P   88 (130)
T 2kuc_A           11 FRELSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNR--HFVNLKMDMEKGEGVELRKKYGVHAYP   88 (130)
T ss_dssp             CBCCCHHHHHHHHHHHSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHHH--HSEEEEECSSSTTHHHHHHHTTCCSSC
T ss_pred             cccCCHHHHHHHHHhcCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHhc--CeEEEEEecCCcchHHHHHHcCCCCCC
Confidence            46788888663   3568999999999999999999999   777777765  689999999852  22  589999999


Q ss_pred             eEEEE-eCCCcccCceeccCCCCHHHHHHHHHhcCCCCC
Q 013976          354 TILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNASIPF  391 (432)
Q Consensus       354 ~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~~  391 (432)
                      ++++| ++|+.+.   .+.|..+.+.|.+||+++.....
T Consensus        89 t~~~~d~~G~~~~---~~~G~~~~~~l~~~l~~~~~~~~  124 (130)
T 2kuc_A           89 TLLFINSSGEVVY---RLVGAEDAPELLKKVKLGVESEG  124 (130)
T ss_dssp             EEEEECTTSCEEE---EEESCCCHHHHHHHHHHHHSCCC
T ss_pred             EEEEECCCCcEEE---EecCCCCHHHHHHHHHHHHHhcc
Confidence            99999 6776653   78899999999999999876554

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=99.42  E-value=3.1e-14  Score=114.06  Aligned_cols=106  Identities=24%  Similarity=0.420  Sum_probs=88.8

Q ss_pred             CCceEEE-ecccchhhhhc---CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCC
Q 013976          278 DGDVKIV-VGNNFDEIVLD---ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDG  351 (432)
Q Consensus       278 ~~~v~~l-~~~~~~~~~~~---~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~  351 (432)
                      .+.+..+ +.++|++.+..   .+++++|.||++||++|+.+.|.|.+++..+.   ++.|+.+|++.+..  .++++.+
T Consensus        13 ~~~~~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~---~v~~~~v~~~~~~~~~~~~~v~~   89 (130)
T 1wmj_A           13 EGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFP---GAVFLKVDVDELKEVAEKYNVEA   89 (130)
T ss_dssp             CSSSBCCSSSHHHHHHHHHHHTTTCBCBEECCSSSCSCSSSSHHHHHHHHHHCT---TBCCEECCTTTSGGGHHHHTCCS
T ss_pred             CcceEEcCCHHHHHHHHHHHhhcCCEEEEEEECCCChhHHHHHHHHHHHHHHCC---CCEEEEEeccchHHHHHHcCCCc
Confidence            3456666 45888887754   47899999999999999999999999999986   49999999998766  6899999


Q ss_pred             CceEEEEeCCCcccCceeccCCCCHHHHHHHHHhcCCCC
Q 013976          352 FPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIP  390 (432)
Q Consensus       352 ~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~  390 (432)
                      +|++++|++|+.+.   .+.| .+.+.|.++|++.+...
T Consensus        90 ~Pt~~~~~~g~~~~---~~~g-~~~~~l~~~l~~~~~~~  124 (130)
T 1wmj_A           90 MPTFLFIKDGAEAD---KVVG-ARKDDLQNTIVKHVGAT  124 (130)
T ss_dssp             SCCCCBCTTTTCCB---CCCT-TCTTTHHHHHHHHTSSS
T ss_pred             cceEEEEeCCeEEE---EEeC-CCHHHHHHHHHHHHhcc
Confidence            99999998887664   6677 58889999999988643

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=99.42  E-value=7.6e-13  Score=97.26  Aligned_cols=81  Identities=21%  Similarity=0.275  Sum_probs=71.3

Q ss_pred             CcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCcccCceeccCCCC
Q 013976          298 KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRT  375 (432)
Q Consensus       298 ~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~~~g~~~~~~~~y~g~~~  375 (432)
                      ...++.||++||++|+.+.|.+.+++..+.+  ++.++.+|++++..  .++++.++|++++  +|+.     .+.|..+
T Consensus         3 ~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~--~G~~-----~~~G~~~   73 (85)
T 1fo5_A            3 KVKIELFTSPMCPHCPAAKRVVEEVANEMPD--AVEVEYINVMENPQKAMEYGIMAVPTIVI--NGDV-----EFIGAPT   73 (85)
T ss_dssp             CEEEEEEECCCSSCCCTHHHHHHHHHHHCSS--SEEEEEEESSSSCCTTTSTTTCCSSEEEE--TTEE-----ECCSSSS
T ss_pred             ceEEEEEeCCCCCchHHHHHHHHHHHHHcCC--ceEEEEEECCCCHHHHHHCCCcccCEEEE--CCEE-----eeecCCC
Confidence            4679999999999999999999999999986  69999999988776  6899999999999  5532     6888889


Q ss_pred             HHHHHHHHHhcC
Q 013976          376 VVALYKFLKKNA  387 (432)
Q Consensus       376 ~~~l~~fi~~~~  387 (432)
                      .+.|.++|++++
T Consensus        74 ~~~l~~~l~~~l   85 (85)
T 1fo5_A           74 KEALVEAIKKRL   85 (85)
T ss_dssp             SHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhC
Confidence            999999998753

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=99.42  E-value=2.7e-13  Score=107.45  Aligned_cols=99  Identities=18%  Similarity=0.299  Sum_probs=81.2

Q ss_pred             eEEEecccchhhhhc-CCCcEEEEEeCC-------CChhhhhhHHHHHHHHHHhcCCCCEEEEEEeC-------CCccc-
Q 013976          281 VKIVVGNNFDEIVLD-ESKDVLLEIYAP-------WCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG-------TTNEH-  344 (432)
Q Consensus       281 v~~l~~~~~~~~~~~-~~~~~lv~f~~~-------~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~-------~~~~~-  344 (432)
                      +...+.++|.+.+.+ .+++++|.||++       ||++|+.+.|.|.+++..+.+  ++.|+.+|+       +.+.. 
T Consensus         7 v~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~--~~~~~~vd~~~~~~~~d~~~~~   84 (123)
T 1wou_A            7 VSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISE--GCVFIYCQVGEKPYWKDPNNDF   84 (123)
T ss_dssp             EEEESHHHHHHHHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCT--TEEEEEEECCCHHHHHCTTCHH
T ss_pred             EEeccHHHHHHHHHHhCCCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcCC--CcEEEEEECCCchhhhchhHHH
Confidence            566677889988765 578999999999       999999999999999998876  699999999       44444 


Q ss_pred             -ccCCCCCCceEEEEeCCCcccCceeccCCCCHHHHHHHHHh
Q 013976          345 -HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKK  385 (432)
Q Consensus       345 -~~~~i~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~  385 (432)
                       ..++|.++|++++|.++...   ..+.| .+.+.|.+||.+
T Consensus        85 ~~~~~i~~~Pt~~~~~~~~~~---~g~~~-~~~~~l~~~i~~  122 (123)
T 1wou_A           85 RKNLKVTAVPTLLKYGTPQKL---VESEC-LQANLVEMLFSE  122 (123)
T ss_dssp             HHHHCCCSSSEEEETTSSCEE---EGGGG-GCHHHHHHHHHC
T ss_pred             HHHCCCCeeCEEEEEcCCceE---ecccc-CCHHHHHHHHhc
Confidence             57999999999999875543   23443 678899999875

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=99.40  E-value=3.3e-13  Score=108.51  Aligned_cols=87  Identities=22%  Similarity=0.427  Sum_probs=74.8

Q ss_pred             cCCCcEEEEEeCCCChhhhhhHHHHH--HHHHHhcCCCCEEEEEEeC---CCccc--ccCCC---CCCceEEEE-eCCCc
Q 013976          295 DESKDVLLEIYAPWCGHCQAFEPTYN--KLAKHLRGVDSIVIAKMDG---TTNEH--HRAKS---DGFPTILFF-PAGNK  363 (432)
Q Consensus       295 ~~~~~~lv~f~~~~c~~c~~~~~~~~--~la~~~~~~~~~~~~~id~---~~~~~--~~~~i---~~~P~i~~~-~~g~~  363 (432)
                      ..+++++|.||++||++|+.+.|.|.  +++..+.+  ++.++.+|+   +.+..  ..++|   .++|++++| ++|+.
T Consensus        27 ~~~k~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~~~--~~~~~~vd~~~~~~~~~l~~~~~v~~~~~~Pt~~~~d~~G~~  104 (133)
T 3fk8_A           27 RTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIAK--HFEVVKIDVGNFDRNLELSQAYGDPIQDGIPAVVVVNSDGKV  104 (133)
T ss_dssp             HHTCCEEEEEECTTCHHHHHHHHHHTSHHHHHHHHH--HCEEEEEECTTTTSSHHHHHHTTCGGGGCSSEEEEECTTSCE
T ss_pred             hcCCcEEEEEcCCCCHHHHHHHHHhCCHHHHHHhcC--CEEEEEEeCCcccchHHHHHHhCCccCCccceEEEECCCCCE
Confidence            45799999999999999999999999  99999976  699999999   55544  68999   999999999 78876


Q ss_pred             ccCceeccC-------CCCHHHHHHHHHhc
Q 013976          364 SFDPINVDV-------DRTVVALYKFLKKN  386 (432)
Q Consensus       364 ~~~~~~y~g-------~~~~~~l~~fi~~~  386 (432)
                      +.   .+.|       ..+.+.+.+||++.
T Consensus       105 ~~---~~~g~~~~~~~~~~~~~l~~~l~~l  131 (133)
T 3fk8_A          105 RY---TTKGGELANARKMSDQGIYDFFAKI  131 (133)
T ss_dssp             EE---ECCSCTTTTGGGSCHHHHHHHHHHH
T ss_pred             EE---EecCCcccccccCCHHHHHHHHHHh
Confidence            54   5666       67999999999875

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=99.40  E-value=6.8e-13  Score=106.80  Aligned_cols=99  Identities=25%  Similarity=0.484  Sum_probs=80.2

Q ss_pred             ecccchhhhhc-CCCcEEEEEeCCCChhhhhhHHHH---HHHHHHhcCCCCEEEEEEeCCCccc------ccCCCCCCce
Q 013976          285 VGNNFDEIVLD-ESKDVLLEIYAPWCGHCQAFEPTY---NKLAKHLRGVDSIVIAKMDGTTNEH------HRAKSDGFPT  354 (432)
Q Consensus       285 ~~~~~~~~~~~-~~~~~lv~f~~~~c~~c~~~~~~~---~~la~~~~~~~~~~~~~id~~~~~~------~~~~i~~~P~  354 (432)
                      +.++|...+.+ .++++||.||++||++|+.+.+.+   .+++..+++   +.++.+|++.+..      ..++|.++|+
T Consensus        18 ~~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~~---~~~~~vd~~~~~~~~~~l~~~~~v~~~Pt   94 (134)
T 2fwh_A           18 TVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALAD---TVLLQANVTANDAQDVALLKHLNVLGLPT   94 (134)
T ss_dssp             SHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTTT---SEEEEEECTTCCHHHHHHHHHTTCCSSSE
T ss_pred             CHHHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcC---cEEEEEeCCCCcchHHHHHHHcCCCCCCE
Confidence            34666666643 378999999999999999999999   899988864   9999999976432      4799999999


Q ss_pred             EEEE-eCCCcccCceeccCCCCHHHHHHHHHhcC
Q 013976          355 ILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNA  387 (432)
Q Consensus       355 i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  387 (432)
                      +++| ++|+.+ ....+.|..+.+.|.++|++..
T Consensus        95 ~~~~d~~G~~v-~~~~~~G~~~~~~l~~~l~~~~  127 (134)
T 2fwh_A           95 ILFFDGQGQEH-PQARVTGFMDAETFSAHLRDRQ  127 (134)
T ss_dssp             EEEECTTSCBC-GGGCBCSCCCHHHHHHHHHHC-
T ss_pred             EEEECCCCCEe-eeeeeeeccCHHHHHHHHHhcC
Confidence            9999 777764 1137899999999999998764

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=99.40  E-value=6.8e-12  Score=111.63  Aligned_cols=195  Identities=10%  Similarity=0.008  Sum_probs=136.8

Q ss_pred             eeCCHHHHHHHhhc-CCeEEEEEecCC--Ccc---hHHHHHHHhccCCC------ceEEEeC---cHHHHhHcCCCCCCC
Q 013976           50 NITTLDEAERVLTS-ETKVVLGYLNSL--VGS---ESEVLADASRLEDD------VNFYQTT---NPDVAKIFHLDSKVN  114 (432)
Q Consensus        50 ~i~~~~~l~~~~~~-~~~~vv~f~~~~--~~~---~~~~f~~~a~~~~~------~~F~~~~---~~~~~~~~~~~~~~~  114 (432)
                      ..++.++|+.++.. ...++|.||...  +.+   ....+.++|+..+.      +.|+.++   ++++++.||+..   
T Consensus        10 ~~~~~~ql~~~~~~~~~pv~v~~~~~~~~c~~c~~~~~~l~ela~~~~~~~~~~~v~~~~vd~d~~~~~~~~~gv~~---   86 (243)
T 2hls_A           10 SEDFRRELRETLAEMVNPVEVHVFLSKSGCETCEDTLRLMKLFEEESPTRNGGKLLKLNVYYRESDSDKFSEFKVER---   86 (243)
T ss_dssp             CHHHHHHHHHHHTTCCSCEEEEEEECSSSCTTHHHHHHHHHHHHHHSCEETTEESEEEEEEETTTTHHHHHHTTCCS---
T ss_pred             CHHHHHHHHHHHHhCCCCEEEEEEeCCCCCCchHHHHHHHHHHHHhccCCCCCceeEEEEecCCcCHHHHHhcCCCc---
Confidence            44566788888765 234455555444  443   33345566644333      8888754   578999999985   


Q ss_pred             CCeEEEEecCCCceecccCCCCCHHHHHHHHHhcCC--CceeecCCCchhhhccC-CCcceEEEEEeC-cchhhhHHHHH
Q 013976          115 RPALVMVKKETEKISYFADGKFDKSTIADFVFSNKL--PLVTIFTRENAPSVFES-PIKNQLLLFAVS-NDSEKLLPVFE  190 (432)
Q Consensus       115 ~p~i~l~~~~~~~~~~y~~g~~~~~~l~~fi~~~~~--p~v~~l~~~~~~~~~~~-~~~~~i~~~~~~-~~~~~~~~~~~  190 (432)
                      .|++.++ . +  ...| .|......+..|+.....  ..-..++.+++..+... +...++.||++| ++|+.+.+.|.
T Consensus        87 ~Pt~~i~-~-g--~~~~-~G~~~~~~l~~fv~~~l~~~~~~~~l~~~~~~~~~~~~~~~~vv~F~a~wC~~C~~~~p~l~  161 (243)
T 2hls_A           87 VPTVAFL-G-G--EVRW-TGIPAGEEIRALVEVIMRLSEDESGLEDATKEALKSLKGRVHIETIITPSCPYCPYAVLLAH  161 (243)
T ss_dssp             SSEEEET-T-T--TEEE-ESCCCTTHHHHHHHHHHHHHTTCCCCCHHHHHHHHHCCSCEEEEEEECSSCSSHHHHHHHHH
T ss_pred             CCEEEEE-C-C--ceeE-cCCCcHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHcCCCcEEEEEECCCCCCcHHHHHHHH
Confidence            7999998 3 2  5667 777777788888765321  11123444444444322 334467799999 99999999999


Q ss_pred             HHHHhcc----CceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCceecCCCCCCHHHHHHHHHHHhcC
Q 013976          191 EAAKSFK----GKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEG  262 (432)
Q Consensus       191 ~~a~~~~----~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g  262 (432)
                      ++|..+.    +++.++.+|++.   ++.+++.||+.+.  |++++  ++  .. .+.|.++.+.|.+|+...+..
T Consensus       162 ~la~~~~~~~~~~v~~~~vd~~~---~~~~~~~~~V~~v--Pt~~i--~G--~~-~~~G~~~~~~l~~~l~~~~~~  227 (243)
T 2hls_A          162 MFAYEAWKQGNPVILSEAVEAYE---NPDIADKYGVMSV--PSIAI--NG--YL-VFVGVPYEEDFLDYVKSAAEG  227 (243)
T ss_dssp             HHHHHHHHTTCCCEEEEEEETTT---CHHHHHHTTCCSS--SEEEE--TT--EE-EEESCCCHHHHHHHHHHHHTT
T ss_pred             HHHHHcccccCCcEEEEEEECcc---CHHHHHHcCCeee--CeEEE--CC--EE-EEeCCCCHHHHHHHHHHHhhc
Confidence            9999983    569999999998   5688999999988  99977  22  22 378999999999999998864

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=99.39  E-value=8.7e-13  Score=96.92  Aligned_cols=80  Identities=14%  Similarity=0.151  Sum_probs=70.7

Q ss_pred             cEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCcccCceeccCCCCH
Q 013976          299 DVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTV  376 (432)
Q Consensus       299 ~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~~~g~~~~~~~~y~g~~~~  376 (432)
                      ..+|.||++||++|+.+.|.+.+++..+.+  ++.++.+|++.+..  .++++.++|++++  +|+.     .+.|..+.
T Consensus         3 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~--~G~~-----~~~G~~~~   73 (85)
T 1nho_A            3 VNIEVFTSPTCPYCPMAIEVVDEAKKEFGD--KIDVEKIDIMVDREKAIEYGLMAVPAIAI--NGVV-----RFVGAPSR   73 (85)
T ss_dssp             CCEEEESCSSSCCSTTHHHHHHHHHHHHCS--SCCEEEECTTTCGGGGGGTCSSCSSEEEE--TTTE-----EEECSSCC
T ss_pred             EEEEEEECCCCcchHHHHHHHHHHHHHhcC--CeEEEEEECCCCHHHHHhCCceeeCEEEE--CCEE-----EEccCCCH
Confidence            368999999999999999999999999986  69999999998876  6899999999999  5542     68888899


Q ss_pred             HHHHHHHHhcC
Q 013976          377 VALYKFLKKNA  387 (432)
Q Consensus       377 ~~l~~fi~~~~  387 (432)
                      +.|.++|++.+
T Consensus        74 ~~l~~~l~~~l   84 (85)
T 1nho_A           74 EELFEAINDEM   84 (85)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHHh
Confidence            99999998865

>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens}

Probab=99.38  E-value=1.5e-11  Score=110.15  Aligned_cols=212  Identities=16%  Similarity=0.137  Sum_probs=153.1

Q ss_pred             cCCCceeecC-CCchhhhccCCCcceEEEEEeCcchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCC
Q 013976          148 NKLPLVTIFT-RENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEA  226 (432)
Q Consensus       148 ~~~p~v~~l~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~  226 (432)
                      .+-|.+.+++ .+.+..++.....++|.||.++  +......|.++|..+++.+.|+.+.      ...+++.++++.  
T Consensus         3 ~~gP~v~~l~s~~~~~~~l~~~~v~vvgff~~~--~~~~~~~f~~~A~~lr~~~~F~~~~------~~~v~~~~~~~~--   72 (252)
T 2h8l_A            3 LGSPASVPLRTEEEFKKFISDKDASIVGFFDDS--FSEAHSEFLKAASNLRDNYRFAHTN------VESLVNEYDDNG--   72 (252)
T ss_dssp             ---CCEEECCSHHHHHHHHTSSSCEEEEEESCT--TSHHHHHHHHHHHHTTTTSCEEEEC------CHHHHHHHCSSS--
T ss_pred             cCCCCceeecCHHHHHHHhhcCCeEEEEEECCC--CChHHHHHHHHHHhcccCcEEEEEC------hHHHHHHhCCCC--
Confidence            3567788885 4556666666655566677654  5566778999999999999998874      346889999973  


Q ss_pred             CcEEEEEeCC------CCceecC-CCCCCHHHHHHHHHHHhcCCcCccccCCCCCCCCCCceEEEecccchhhhhcCCCc
Q 013976          227 PKVLAYTGND------DAKKHIL-DGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKD  299 (432)
Q Consensus       227 ~P~i~i~~~~------~~~~y~~-~~~~~~~~i~~fi~~~~~g~l~~~~~se~~p~~~~~~v~~l~~~~~~~~~~~~~~~  299 (432)
                       |+++++.++      ......| .|.++.+.|.+||....-                 +.|..++..++..+   .+.+
T Consensus        73 -p~i~~fk~~~~~~kf~e~~~~y~~g~~~~~~l~~fi~~~~~-----------------Plv~e~t~~n~~~~---~~~~  131 (252)
T 2h8l_A           73 -EGIILFRPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQENIF-----------------GICPHMTEDNKDLI---QGKD  131 (252)
T ss_dssp             -EEEEEECCGGGCCTTSCSEEECCCSSCCHHHHHHHHHHHSS-----------------CSSCEECTTTHHHH---SSSS
T ss_pred             -CcEEEEcchhhcccccccccccCCCCcCHHHHHHHHHhccc-----------------CCeeecccccHhhh---cCCC
Confidence             888877642      1345667 899999999999999652                 34788999999885   2456


Q ss_pred             EEEEEeCCCChhh----hhhHHHHHHHHHHhcC-CCCEEEEEEeCCCccc--ccCCC----CCCceEEEEeCCCcccCce
Q 013976          300 VLLEIYAPWCGHC----QAFEPTYNKLAKHLRG-VDSIVIAKMDGTTNEH--HRAKS----DGFPTILFFPAGNKSFDPI  368 (432)
Q Consensus       300 ~lv~f~~~~c~~c----~~~~~~~~~la~~~~~-~~~~~~~~id~~~~~~--~~~~i----~~~P~i~~~~~g~~~~~~~  368 (432)
                      ++|.|+...+..+    ..+...+.++|+.+++ ...+.|+.+|+.....  ..+++    ..+|.++++......   .
T Consensus       132 ~~v~~~~~~~~~~~~~~~~~~~~~~~vA~~~~~k~~~~~F~~~d~~~~~~~~~~fgl~~~~~~~P~v~i~~~~~~k---y  208 (252)
T 2h8l_A          132 LLIAYYDVDYEKNAKGSNYWRNRVMMVAKKFLDAGHKLNFAVASRKTFSHELSDFGLESTAGEIPVVAIRTAKGEK---F  208 (252)
T ss_dssp             EEEEEECCBTTTBHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEETTTTHHHHGGGTCCCCSCSSCEEEEECTTSCE---E
T ss_pred             eEEEEeecchhhcchhHHHHHHHHHHHHHHccccCceEEEEEEchHHHHHHHHHcCCCCccCCCCEEEEEeCcCcE---e
Confidence            7777775543222    2477889999999986 2349999999987765  56777    369999999543221   2


Q ss_pred             eccCCCCHHH--HHHHHHhcCCCCCcc
Q 013976          369 NVDVDRTVVA--LYKFLKKNASIPFKI  393 (432)
Q Consensus       369 ~y~g~~~~~~--l~~fi~~~~~~~~~~  393 (432)
                      .+.+..+.+.  |.+|+++....+...
T Consensus       209 ~~~~~~t~~~~~i~~F~~~~~~Gkl~~  235 (252)
T 2h8l_A          209 VMQEEFSRDGKALERFLQDYFDGNLKR  235 (252)
T ss_dssp             ECCSCCCTTSHHHHHHHHHHHHTCSCC
T ss_pred             cCCcccCcchHHHHHHHHHHHCCCccc
Confidence            4667788888  999999998776644

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=99.37  E-value=6.1e-13  Score=102.31  Aligned_cols=87  Identities=11%  Similarity=0.108  Sum_probs=68.7

Q ss_pred             CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCC---CCEEEEEEeCCCccc----ccCCCCCCceEEEEeCCCcccCce
Q 013976          296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV---DSIVIAKMDGTTNEH----HRAKSDGFPTILFFPAGNKSFDPI  368 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~---~~~~~~~id~~~~~~----~~~~i~~~P~i~~~~~g~~~~~~~  368 (432)
                      +.+.+||+|||+||++|+.+.+.   ++..+...   ..+.+.++|++.+..    ..++|.++||+++|.+|+.+.   
T Consensus        17 ~~~~~LV~F~A~wC~~Ck~~~~~---i~~~~~~~a~~~~~~l~~vdv~~~~~~~la~~~~V~g~PT~i~f~~G~ev~---   90 (116)
T 3dml_A           17 KAELRLLMFEQPGCLYCARWDAE---IAPQYPLTDEGRAAPVQRLQMRDPLPPGLELARPVTFTPTFVLMAGDVESG---   90 (116)
T ss_dssp             --CEEEEEEECTTCHHHHHHHHH---TTTTGGGSHHHHHSCEEEEETTSCCCTTCBCSSCCCSSSEEEEEETTEEEE---
T ss_pred             cCCCEEEEEECCCCHHHHHHHHH---HHhhHHHhhhcccceEEEEECCCCCchhHHHHCCCCCCCEEEEEECCEEEe---
Confidence            34789999999999999999753   33334331   127788899988743    478999999999999998876   


Q ss_pred             eccCCCCHHHHHHHHHhcCC
Q 013976          369 NVDVDRTVVALYKFLKKNAS  388 (432)
Q Consensus       369 ~y~g~~~~~~l~~fi~~~~~  388 (432)
                      +..|....+.+..||.+.+.
T Consensus        91 Ri~G~~~~~~f~~~L~~~l~  110 (116)
T 3dml_A           91 RLEGYPGEDFFWPMLARLIG  110 (116)
T ss_dssp             EEECCCCHHHHHHHHHHHHH
T ss_pred             eecCCCCHHHHHHHHHHHHh
Confidence            88999999999999988653

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=99.35  E-value=1.4e-12  Score=109.84  Aligned_cols=99  Identities=14%  Similarity=0.214  Sum_probs=78.7

Q ss_pred             Eecccchhhhh---cCCCcEEEEEeCCCChhhhhhHHHH---HHHHHHhcCCCCEEEEEEeCCCcc--------------
Q 013976          284 VVGNNFDEIVL---DESKDVLLEIYAPWCGHCQAFEPTY---NKLAKHLRGVDSIVIAKMDGTTNE--------------  343 (432)
Q Consensus       284 l~~~~~~~~~~---~~~~~~lv~f~~~~c~~c~~~~~~~---~~la~~~~~~~~~~~~~id~~~~~--------------  343 (432)
                      ++..+|++.+.   ..+++++|.|||+||++|+.+.+.+   .++.+.+++  ++.++.+|++.+.              
T Consensus        31 ~~~~~~~~~~~~a~~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~~--~~~~v~v~~d~~~~~~~~~~~~~~~~~  108 (172)
T 3f9u_A           31 AKFDDYDLGMEYARQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINN--DYVLITLYVDNKTPLTEPVKIMENGTE  108 (172)
T ss_dssp             CCBSCHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHHH--HCEEEEEETTCCCEEEEEEEEEETTEE
T ss_pred             cchhhHHHHHHHHHHcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcC--CEEEEEEecCcccccchhhhhhhcchh
Confidence            44567776553   4578999999999999999975544   666666665  6999999998776              


Q ss_pred             --------------cccCCCCCCceEEEE-eCCCcccCceeccCCCC-HHHHHHHHHhcC
Q 013976          344 --------------HHRAKSDGFPTILFF-PAGNKSFDPINVDVDRT-VVALYKFLKKNA  387 (432)
Q Consensus       344 --------------~~~~~i~~~P~i~~~-~~g~~~~~~~~y~g~~~-~~~l~~fi~~~~  387 (432)
                                    ...+++.++|+++++ ++|+.+.   .+.|..+ .+.+.++|++.+
T Consensus       109 ~~~~~~~~~~~~~~~~~~~v~~~Pt~~lid~~G~~~~---~~~G~~~~~~~l~~~l~~~l  165 (172)
T 3f9u_A          109 RTLRTVGDKWSYLQRVKFGANAQPFYVLIDNEGNPLN---KSYAYDEDISKYINFLQTGL  165 (172)
T ss_dssp             EEEEEHHHHHHHHHHHHHSCCCSSEEEEECTTSCBSS---CCBCSCCCHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhHHHHHHcCCCCcceEEEECCCCCEEe---eccCCCCCHHHHHHHHHHHH
Confidence                          345789999999999 7787764   6778887 999999998865

>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}

Probab=99.30  E-value=1.7e-12  Score=98.38  Aligned_cols=96  Identities=14%  Similarity=0.166  Sum_probs=77.3

Q ss_pred             eEEEe-cccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc------ccCCCC-CC
Q 013976          281 VKIVV-GNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------HRAKSD-GF  352 (432)
Q Consensus       281 v~~l~-~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~------~~~~i~-~~  352 (432)
                      ...|+ .++|++.+ +.+++++|+|||+||++|+.+.|.|++++..  .  ++.|+.+|++++..      .+++|. ..
T Consensus         8 ~~~i~s~e~f~~ii-~~~~~vvi~khatwCgpc~~~~~~~e~~~~~--~--~v~~~~vdVde~r~~Sn~IA~~~~V~h~s   82 (112)
T 3iv4_A            8 AIKLSSIDQFEQVI-EENKYVFVLKHSETCPISANAYDQFNKFLYE--R--DMDGYYLIVQQERDLSDYIAKKTNVKHES   82 (112)
T ss_dssp             EEECCSHHHHHHHH-HHCSEEEEEEECTTCHHHHHHHHHHHHHHHH--H--TCCEEEEEGGGGHHHHHHHHHHHTCCCCS
T ss_pred             eeecCCHHHHHHHH-hcCCCEEEEEECCcCHhHHHHHHHHHHHhcc--C--CceEEEEEeecCchhhHHHHHHhCCccCC
Confidence            44554 47788866 4489999999999999999999999999984  2  69999999998853      689999 59


Q ss_pred             ceEEEEeCCCcccCceeccCCCCHHHHHHHH
Q 013976          353 PTILFFPAGNKSFDPINVDVDRTVVALYKFL  383 (432)
Q Consensus       353 P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi  383 (432)
                      |++++|++|+.+.+  .-.+..+...|.+.+
T Consensus        83 Pq~il~k~G~~v~~--~SH~~I~~~~l~~~~  111 (112)
T 3iv4_A           83 PQAFYFVNGEMVWN--RDHGDINVSSLAQAE  111 (112)
T ss_dssp             SEEEEEETTEEEEE--EEGGGCSHHHHHHHT
T ss_pred             CeEEEEECCEEEEE--eeccccCHHHHHHhh
Confidence            99999999988641  234577888777654

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=99.30  E-value=1.5e-11  Score=97.82  Aligned_cols=105  Identities=14%  Similarity=0.119  Sum_probs=90.2

Q ss_pred             CCceeecCCCchhhhcc-CCCcceEEEEEeC-cchhhhHHHHHHHHHhcc-----CceEEEEEecCCcccccchhhhhCC
Q 013976          150 LPLVTIFTRENAPSVFE-SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFK-----GKLIFVYVQMDNEDVGKPVSEYFGI  222 (432)
Q Consensus       150 ~p~v~~l~~~~~~~~~~-~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~-----~~i~f~~vd~~~~~~~~~l~~~~~i  222 (432)
                      .+.+..++.+++...+. .+++++|.||++| ++|+.+.+.|.++|..+.     +.+.|+.+|++.   ++.+++.|+|
T Consensus        14 ~~~v~~l~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~---~~~l~~~~~v   90 (127)
T 3h79_A           14 PSRVVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEK---YPDVIERMRV   90 (127)
T ss_dssp             CCCCEECCTTTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTT---CHHHHHHTTC
T ss_pred             CCceEECChhhHHHHHhCCCCCEEEEEECCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEccc---cHhHHHhcCC
Confidence            34688999999998774 5778899999999 999999999999998764     569999999998   6699999999


Q ss_pred             CCCCCcEEEEEeCCCCc-eecCCCCCCHHHHHHHHHHH
Q 013976          223 TGEAPKVLAYTGNDDAK-KHILDGELTLDKIKTFGEDF  259 (432)
Q Consensus       223 ~~~~~P~i~i~~~~~~~-~y~~~~~~~~~~i~~fi~~~  259 (432)
                      .++  |+++++..++.. ...+.|.++.+.|.+||.+.
T Consensus        91 ~~~--Pt~~~~~~g~~~~~~~~~G~~~~~~l~~~i~~~  126 (127)
T 3h79_A           91 SGF--PTMRYYTRIDKQEPFEYSGQRYLSLVDSFVFQN  126 (127)
T ss_dssp             CSS--SEEEEECSSCSSSCEECCSCCCHHHHHHHHHHH
T ss_pred             ccC--CEEEEEeCCCCCCceEecCCccHHHHHHHHHhc
Confidence            998  999999766532 36789999999999999874

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=98.96  E-value=2.5e-13  Score=108.79  Aligned_cols=93  Identities=19%  Similarity=0.245  Sum_probs=76.9

Q ss_pred             cCCCcEEEEEeCCCChhhhhhHHHH---HHHHHHhcCCCCEEEEEEeCCCc--cc--ccCCCCCCceEEEE--eCCCc--
Q 013976          295 DESKDVLLEIYAPWCGHCQAFEPTY---NKLAKHLRGVDSIVIAKMDGTTN--EH--HRAKSDGFPTILFF--PAGNK--  363 (432)
Q Consensus       295 ~~~~~~lv~f~~~~c~~c~~~~~~~---~~la~~~~~~~~~~~~~id~~~~--~~--~~~~i~~~P~i~~~--~~g~~--  363 (432)
                      ..++++||+||++||++|+.+.|.+   .++++.+..  ++.++.+|++..  ..  ..++|.++|++++|  .+|+.  
T Consensus        17 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~d~~~G~~~~   94 (130)
T 2lst_A           17 AHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEA--RFVVASVSVDTPEGQELARRYRVPGTPTFVFLVPKAGAWEE   94 (130)
Confidence            4568999999999999999999999   889888876  699999998533  22  58899999999999  55665  


Q ss_pred             ccCceeccCCCCHHHHHHHHHhcCCCCCc
Q 013976          364 SFDPINVDVDRTVVALYKFLKKNASIPFK  392 (432)
Q Consensus       364 ~~~~~~y~g~~~~~~l~~fi~~~~~~~~~  392 (432)
                      +.   .+.|..+.+.|.++|++.++....
T Consensus        95 ~~---~~~G~~~~~~l~~~l~~~~~~~~~  120 (130)
T 2lst_A           95 VG---RLFGSRPRAEFLKELRQVCVKGGA  120 (130)
Confidence            33   788989999999999988765443

>3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic reticulum, glycoprotein, redox-active center; 1.92A {Rattus norvegicus}

Probab=99.27  E-value=1.7e-10  Score=103.14  Aligned_cols=210  Identities=12%  Similarity=0.099  Sum_probs=149.7

Q ss_pred             CCCceeecCC-CchhhhccC-CCcceEEEEEeCcchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCC
Q 013976          149 KLPLVTIFTR-ENAPSVFES-PIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEA  226 (432)
Q Consensus       149 ~~p~v~~l~~-~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~  226 (432)
                      +-|.+.+++. +.+..++.. ...++|-||.+  .+......|.++|..+++.+.|+...      ...++..++++.  
T Consensus         4 ~gP~v~~l~s~~~~~~~~~~~~~v~vVgff~~--~~~~~~~~F~~~A~~lr~~~~F~~t~------~~~v~~~~~v~~--   73 (250)
T 3ec3_A            4 GSPPSKEILTLKQVQEFLKDGDDVVILGVFQG--VGDPGYLQYQDAANTLREDYKFHHTF------STEIAKFLKVSL--   73 (250)
T ss_dssp             -CCSSEECCCHHHHHHHHHHCSSCEEEEECSC--TTCHHHHHHHHHHHHHTTTCCEEEEC------CHHHHHHHTCCS--
T ss_pred             CCCCceecCCHHHHHHHHhcCCCeEEEEEEcC--CCchHHHHHHHHHHhhhcCcEEEEEC------cHHHHHHcCCCC--
Confidence            4577777765 666666665 54555556654  35677888999999999999999874      346788899864  


Q ss_pred             CcEEEEEeCC------CCceecCC--CCCCHHHHHHHHHHHhcCCcCccccCCCCCCCCCCceEEEecccchhhhhcCCC
Q 013976          227 PKVLAYTGND------DAKKHILD--GELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESK  298 (432)
Q Consensus       227 ~P~i~i~~~~------~~~~y~~~--~~~~~~~i~~fi~~~~~g~l~~~~~se~~p~~~~~~v~~l~~~~~~~~~~~~~~  298 (432)
                       |+++++.++      ......|.  |.++.+.|.+||....-                 +.|..++..++.... . ++
T Consensus        74 -p~ivlfk~~~~~~kfde~~~~y~g~~~~~~~~l~~fi~~~~~-----------------Plv~e~t~~n~~~~~-~-~~  133 (250)
T 3ec3_A           74 -GKLVLMQPEKFQSKYEPRMHVMDVQGSTEASAIKDYVVKHAL-----------------PLVGHRKTSNDAKRY-S-KR  133 (250)
T ss_dssp             -SEEEEECCGGGCCTTSCSCEEEECCTTSCHHHHHHHHHHHSS-----------------CTEEEECTTTHHHHS-C-SS
T ss_pred             -CeEEEEecchhhccccccceeccCCCCCCHHHHHHHHHHcCC-----------------CceeecCccchhhhh-c-cC
Confidence             888888642      12344556  57899999999999642                 348889999998865 3 67


Q ss_pred             cEEEEEeCC-CC----hhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCC--C-ceEEEEeCCCcccCce
Q 013976          299 DVLLEIYAP-WC----GHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDG--F-PTILFFPAGNKSFDPI  368 (432)
Q Consensus       299 ~~lv~f~~~-~c----~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~--~-P~i~~~~~g~~~~~~~  368 (432)
                      ++++.|+.. .+    ..+..+...+.++|+.++   ++.|+.+|+..+..  ..+++..  + |.++++..+...   .
T Consensus       134 ~l~~~~~~~d~~~~~~~~~~~~~~~~~~vAk~~k---ki~F~~~d~~~~~~~l~~fgl~~~~~~p~~~~~~~~~~k---y  207 (250)
T 3ec3_A          134 PLVVVYYSVDFSFDYRTATQFWRNKVLEVAKDFP---EYTFAIADEEDYATEVKDLGLSESGGDVNAAILDESGKK---F  207 (250)
T ss_dssp             SEEEEEECCCCSTTTHHHHHHHHHHHHHHHTTCT---TSEEEEEETTTTHHHHHHTTCSSCSCSCEEEEECTTSCE---E
T ss_pred             ccEEEEEecccccccchhHHHHHHHHHHHHHhhc---ceeEEEEcHHHHHHHHHHcCCCccCCCcEEEEEcCCCce---e
Confidence            777777753 22    234567888999999988   49999999987655  4667763  4 467666533221   1


Q ss_pred             ecc-CCCCHHHHHHHHHhcCCCCCccc
Q 013976          369 NVD-VDRTVVALYKFLKKNASIPFKIQ  394 (432)
Q Consensus       369 ~y~-g~~~~~~l~~fi~~~~~~~~~~~  394 (432)
                      .+. +..+.+.|.+|+++....+....
T Consensus       208 ~~~~~~~t~~~i~~Fv~~~~~Gkl~p~  234 (250)
T 3ec3_A          208 AMEPEEFDSDALREFVMAFKKGKLKPV  234 (250)
T ss_dssp             ECCCCSCCHHHHHHHHHHHHTTCCCCC
T ss_pred             cCCcccCCHHHHHHHHHHHHCCCccce
Confidence            344 67899999999999998876543

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.24  E-value=7.4e-11  Score=94.14  Aligned_cols=106  Identities=20%  Similarity=0.194  Sum_probs=92.3

Q ss_pred             CceeecCCCchhh-hccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCc
Q 013976          151 PLVTIFTRENAPS-VFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPK  228 (432)
Q Consensus       151 p~v~~l~~~~~~~-~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P  228 (432)
                      +.+..++.+++.. +...++++++.||++| +.|+.+.+.+.+++.++.+.+.|+.+|++.   +..+++.|++...  |
T Consensus        17 ~~v~~l~~~~f~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~---~~~l~~~~~v~~~--P   91 (130)
T 2dml_A           17 DDVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGAVNADK---HQSLGGQYGVQGF--P   91 (130)
T ss_dssp             SSSEECCTTTHHHHTTTCSSCEEEEEECTTCSTTGGGHHHHHHHHHHTTTTSEEEEEETTT---CHHHHHHHTCCSS--S
T ss_pred             CCcEECCHHHHHHHHhcCCCeEEEEEECCCCHHHHhhCHHHHHHHHHhcCceEEEEEeCCC---CHHHHHHcCCCcc--C
Confidence            3577889999987 4466778889999999 999999999999999999999999999988   5689999999988  9


Q ss_pred             EEEEEeCCCCceecCCCCCCHHHHHHHHHHHhc
Q 013976          229 VLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  261 (432)
Q Consensus       229 ~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  261 (432)
                      ++++++.+......+.|..+.+.+.+|+.+.+.
T Consensus        92 t~~~~~~~~~~~~~~~G~~~~~~l~~~l~~~l~  124 (130)
T 2dml_A           92 TIKIFGANKNKPEDYQGGRTGEAIVDAALSALR  124 (130)
T ss_dssp             EEEEESSCTTSCEECCSCCSHHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCeEEEeecCCCHHHHHHHHHHHHh
Confidence            999997765446778899999999999998774

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=99.24  E-value=1.7e-11  Score=101.08  Aligned_cols=87  Identities=16%  Similarity=0.283  Sum_probs=73.4

Q ss_pred             CCCcEEEEEe-CCCChhhhhhHHHH---HHHHHHhcCCCCEEEEEEeCCCcc-----------c--ccCCCCCCceEEEE
Q 013976          296 ESKDVLLEIY-APWCGHCQAFEPTY---NKLAKHLRGVDSIVIAKMDGTTNE-----------H--HRAKSDGFPTILFF  358 (432)
Q Consensus       296 ~~~~~lv~f~-~~~c~~c~~~~~~~---~~la~~~~~~~~~~~~~id~~~~~-----------~--~~~~i~~~P~i~~~  358 (432)
                      .+++++|.|| ++||++|+.+.|.+   .+++..+..  ++.++.+|++...           .  ..++|.++|+++++
T Consensus        46 ~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~--~~~~v~vd~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~~~  123 (154)
T 2ju5_A           46 DHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGV--HLHMVEVDFPQKNHQPEEQRQKNQELKAQYKVTGFPELVFI  123 (154)
T ss_dssp             HCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHHH--HCEEEEEECCSSCCCCHHHHHHHHHHHHHTTCCSSSEEEEE
T ss_pred             CCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcC--cEEEEEecCccccCCChhhHhhHHHHHHHcCCCCCCEEEEE
Confidence            4689999999 99999999999999   778776654  6999999998764           1  57999999999999


Q ss_pred             -eCCCcccCceeccCCC--CHHHHHHHHHhcCC
Q 013976          359 -PAGNKSFDPINVDVDR--TVVALYKFLKKNAS  388 (432)
Q Consensus       359 -~~g~~~~~~~~y~g~~--~~~~l~~fi~~~~~  388 (432)
                       ++|+.+.   .+ |..  +.+.+.++|++.++
T Consensus       124 d~~G~~~~---~~-G~~~~~~~~l~~~l~~~l~  152 (154)
T 2ju5_A          124 DAEGKQLA---RM-GFEPGGGAAYVSKVKSALK  152 (154)
T ss_dssp             CTTCCEEE---EE-CCCTTCHHHHHHHHHHHHT
T ss_pred             cCCCCEEE---Ee-cCCCCCHHHHHHHHHHHHh
Confidence             7777653   56 877  89999999998765

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.22  E-value=3.2e-11  Score=92.93  Aligned_cols=105  Identities=16%  Similarity=0.237  Sum_probs=92.3

Q ss_pred             CCceeecCCCchhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCc
Q 013976          150 LPLVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPK  228 (432)
Q Consensus       150 ~p~v~~l~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P  228 (432)
                      .+.+..++.+++...+..++++++.||++| +.|+.+.+.+.+++..+.+++.|+.+|++.   .+.+++.|++.+.  |
T Consensus         3 ~~~v~~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~i~~~--P   77 (109)
T 3tco_A            3 EDVTLVLTEENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDE---NQKIADKYSVLNI--P   77 (109)
T ss_dssp             CCCCEECCTTTHHHHHHHSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTT---CHHHHHHTTCCSS--S
T ss_pred             CCeEEEecHHHHHHHHhcCCeEEEEEECCCCHHHHhhhHHHHHHHHHhCCCceEEEEcccc---CHHHHHhcCcccC--C
Confidence            356788999999998888888899999999 999999999999999999899999999998   5689999999988  9


Q ss_pred             EEEEEeCCCCceecCCCCCCHHHHHHHHHHHh
Q 013976          229 VLAYTGNDDAKKHILDGELTLDKIKTFGEDFL  260 (432)
Q Consensus       229 ~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~  260 (432)
                      +++++.++ .....+.|..+.+.|.+|+++++
T Consensus        78 t~~~~~~g-~~~~~~~g~~~~~~l~~~l~~~l  108 (109)
T 3tco_A           78 TTLIFVNG-QLVDSLVGAVDEDTLESTVNKYL  108 (109)
T ss_dssp             EEEEEETT-EEEEEEESCCCHHHHHHHHHHHC
T ss_pred             EEEEEcCC-cEEEeeeccCCHHHHHHHHHHHh
Confidence            99888443 34456788899999999999875

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.21  E-value=9.9e-11  Score=94.71  Aligned_cols=108  Identities=13%  Similarity=0.166  Sum_probs=94.0

Q ss_pred             CceeecCCCchhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCc---eEEEEEecCCcccccchhhhhCCCCCC
Q 013976          151 PLVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK---LIFVYVQMDNEDVGKPVSEYFGITGEA  226 (432)
Q Consensus       151 p~v~~l~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~---i~f~~vd~~~~~~~~~l~~~~~i~~~~  226 (432)
                      ..+..++.+++...+..++++++.||++| +.|+.+.+.|.+++..+.+.   +.|+.+|++.   +..+++.|++... 
T Consensus        17 ~~v~~l~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~---~~~~~~~~~v~~~-   92 (140)
T 2dj1_A           17 NGVWVLNDGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATS---ASMLASKFDVSGY-   92 (140)
T ss_dssp             TTEEECCTTTHHHHHTTCSEEEEEECCTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTT---CHHHHHHTTCCSS-
T ss_pred             CCCEEcChHhHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCcc---cHHHHHHCCCCcc-
Confidence            34788999999998888888899999999 99999999999999999875   9999999988   5689999999988 


Q ss_pred             CcEEEEEeCCCCceecCCCCCCHHHHHHHHHHHhcCCcC
Q 013976          227 PKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLK  265 (432)
Q Consensus       227 ~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g~l~  265 (432)
                       |+++++.++.  ...+.|..+.+.|.+|+.+.+.....
T Consensus        93 -Pt~~~~~~G~--~~~~~g~~~~~~l~~~l~~~~~~~~~  128 (140)
T 2dj1_A           93 -PTIKILKKGQ--AVDYDGSRTQEEIVAKVREVSQPDWT  128 (140)
T ss_dssp             -SEEEEEETTE--EEECCSCCCHHHHHHHHHHHHSSSCC
T ss_pred             -CeEEEEECCc--EEEcCCCCCHHHHHHHHHHhcCCCCC
Confidence             9999885543  66788999999999999999875543

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=99.20  E-value=8.9e-11  Score=91.08  Aligned_cols=103  Identities=16%  Similarity=0.132  Sum_probs=89.0

Q ss_pred             eeecCCCchhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEE
Q 013976          153 VTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLA  231 (432)
Q Consensus       153 v~~l~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~  231 (432)
                      +.+++.+++...+ .++++++.||++| +.|+.+.+.+.+++.++.+++.|+.+|++.   ++.+++.||+.+.  |+++
T Consensus         3 v~~l~~~~~~~~~-~~~~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~---~~~l~~~~~v~~~--Pt~~   76 (112)
T 2voc_A            3 IVKATDQSFSAET-SEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDE---NQETAGKYGVMSI--PTLL   76 (112)
T ss_dssp             CEECCTTTHHHHH-SSSEEEEEEECTTBGGGGGHHHHHHHHHHHHTTTCEEEEEETTT---CCSHHHHTTCCSB--SEEE
T ss_pred             eEEecHHHHHHHh-CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCcEEEEEECCC---CHHHHHHcCCCcc--cEEE
Confidence            5678999998877 7778889999999 999999999999999999889999999998   5689999999988  9999


Q ss_pred             EEeCCCCceecCCCCCCHHHHHHHHHHHhcC
Q 013976          232 YTGNDDAKKHILDGELTLDKIKTFGEDFLEG  262 (432)
Q Consensus       232 i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g  262 (432)
                      ++.++ .....+.|..+.+.|.+|+.+.+..
T Consensus        77 ~~~~G-~~~~~~~G~~~~~~l~~~l~~~~~~  106 (112)
T 2voc_A           77 VLKDG-EVVETSVGFKPKEALQELVNKHLLE  106 (112)
T ss_dssp             EEETT-EEEEEEESCCCHHHHHHHHHTTSCS
T ss_pred             EEeCC-EEEEEEeCCCCHHHHHHHHHHHHHh
Confidence            88433 3455678999999999999987753

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*

Probab=99.19  E-value=1.1e-10  Score=96.98  Aligned_cols=117  Identities=14%  Similarity=0.084  Sum_probs=94.1

Q ss_pred             HHHHHhcCCCceeecCCCchhhhccC--CCcceEEEEE-------eC-cchhhhHHHHHHHHHhcc-----CceEEEEEe
Q 013976          142 ADFVFSNKLPLVTIFTRENAPSVFES--PIKNQLLLFA-------VS-NDSEKLLPVFEEAAKSFK-----GKLIFVYVQ  206 (432)
Q Consensus       142 ~~fi~~~~~p~v~~l~~~~~~~~~~~--~~~~~i~~~~-------~~-~~~~~~~~~~~~~a~~~~-----~~i~f~~vd  206 (432)
                      .+++....-..+.+++.++|..++..  +.++++.|++       .| +.|+.+.+.|+++|.+|.     +++.|+.||
T Consensus         9 ~~l~~l~~~~~vi~lt~~nF~~~v~~~~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kvD   88 (178)
T 3ga4_A            9 DDILQLKDDTGVITVTADNYPLLSRGVPGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVD   88 (178)
T ss_dssp             HHHHTTCCTTSEEECCTTTHHHHTTCCTTCEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEE
T ss_pred             HHHHHhhccCCCEECCHHHHHHHHcccCCCcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEEE
Confidence            44444455567899999999998754  3345667777       38 899999999999999998     899999999


Q ss_pred             cCCcccccchhhhhCCCCCCCcEEEEEeCCCCce-------------ecCC-C-CCCHHHHHHHHHHHhcCC
Q 013976          207 MDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKK-------------HILD-G-ELTLDKIKTFGEDFLEGK  263 (432)
Q Consensus       207 ~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~-------------y~~~-~-~~~~~~i~~fi~~~~~g~  263 (432)
                      +++   ++.+++.|||++.  |+++++.++....             |.+. | .++.+.|.+||.+.++-.
T Consensus        89 ~d~---~~~la~~~~I~si--Ptl~~F~~g~~~~~~~~~~~~~~~~~y~~~~~~~~~ae~la~fi~~~t~~~  155 (178)
T 3ga4_A           89 VNE---VPQLVKDLKLQNV--PHLVVYPPAESNKQSQFEWKTSPFYQYSLVPENAENTLQFGDFLAKILNIS  155 (178)
T ss_dssp             TTT---CHHHHHHTTCCSS--CEEEEECCCCGGGGGGCCTTTSCCEEECCCGGGTTCHHHHHHHHHHHHTCC
T ss_pred             Ccc---CHHHHHHcCCCCC--CEEEEEcCCCCCCccccccccCCcceeecccCCCcCHHHHHHHHHHhcCCC
Confidence            998   7799999999998  9999998775333             3333 4 789999999999977633

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=99.19  E-value=8.9e-11  Score=89.89  Aligned_cols=102  Identities=13%  Similarity=0.155  Sum_probs=88.7

Q ss_pred             CceeecCCCchhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcE
Q 013976          151 PLVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKV  229 (432)
Q Consensus       151 p~v~~l~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~  229 (432)
                      ..+.+++.+++...+ .+++.++.||++| +.|+.+.+.+.++++++.+++.|+.+|++.   ++.+++.|++.+.  |+
T Consensus         3 ~~v~~l~~~~~~~~~-~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~v~~~--Pt   76 (106)
T 3die_A            3 MAIVKVTDADFDSKV-ESGVQLVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDE---NPSTAAKYEVMSI--PT   76 (106)
T ss_dssp             CCCEECCTTTHHHHS-CSSEEEEEEECSBCHHHHHHHHHHHHHHHHTTTTCEEEEEETTT---CHHHHHHTTCCSB--SE
T ss_pred             cceEECCHHHHHHHh-cCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCcEEEEEECCc---CHHHHHhCCCccc--CE
Confidence            347788999999888 7778889999999 999999999999999999999999999998   5689999999998  99


Q ss_pred             EEEEeCCCCceecCCCCCCHHHHHHHHHHH
Q 013976          230 LAYTGNDDAKKHILDGELTLDKIKTFGEDF  259 (432)
Q Consensus       230 i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~  259 (432)
                      ++++..+ .....+.|..+.+.|.+|++++
T Consensus        77 ~~~~~~G-~~~~~~~g~~~~~~l~~~l~~~  105 (106)
T 3die_A           77 LIVFKDG-QPVDKVVGFQPKENLAEVLDKH  105 (106)
T ss_dssp             EEEEETT-EEEEEEESCCCHHHHHHHHHTT
T ss_pred             EEEEeCC-eEEEEEeCCCCHHHHHHHHHHh
Confidence            9888643 3445678889999999999875

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=99.19  E-value=7.3e-12  Score=95.96  Aligned_cols=74  Identities=18%  Similarity=0.213  Sum_probs=58.9

Q ss_pred             CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCC------Cccc--ccCCCCCCceEEEEeCCCcccCce
Q 013976          297 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT------TNEH--HRAKSDGFPTILFFPAGNKSFDPI  368 (432)
Q Consensus       297 ~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~------~~~~--~~~~i~~~P~i~~~~~g~~~~~~~  368 (432)
                      ++.++|.|||+||++|+.+.|.|.+++..+.        .+|++      .+..  ..++|.++||+++  +|.      
T Consensus        12 ~k~~vV~F~A~WC~~C~~~~p~~~~~a~~~~--------~v~~~~~~~~~~~~~l~~~~~V~~~PT~~i--~G~------   75 (106)
T 3kp8_A           12 RQIGGTMYGAYWCPHCQDQKELFGAAFDQVP--------YVECSPNGPGTPQAQECTEAGITSYPTWII--NGR------   75 (106)
T ss_dssp             HHHTCEEEECTTCHHHHHHHHHHGGGGGGSC--------EEESCTTCTTSCCCHHHHHTTCCSSSEEEE--TTE------
T ss_pred             CCCEEEEEECCCCHHHHHHHHHHHHHHHhCC--------EEEEecccccchhHHHHHHcCCeEeCEEEE--CCE------
Confidence            4567999999999999999999999986553        45555      2222  5799999999877  553      


Q ss_pred             eccCCCCHHHHHHHHHhc
Q 013976          369 NVDVDRTVVALYKFLKKN  386 (432)
Q Consensus       369 ~y~g~~~~~~l~~fi~~~  386 (432)
                      .|.|.++.+.|.+|+.-.
T Consensus        76 ~~~G~~~~~~l~~~~~~~   93 (106)
T 3kp8_A           76 TYTGVRSLEALAVASGYP   93 (106)
T ss_dssp             EEESCCCHHHHHHHHTCC
T ss_pred             EecCCCCHHHHHHHhCCc
Confidence            589999999999998543

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=99.19  E-value=8.9e-11  Score=95.73  Aligned_cols=102  Identities=13%  Similarity=0.199  Sum_probs=82.6

Q ss_pred             EEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCc-------------------
Q 013976          282 KIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN-------------------  342 (432)
Q Consensus       282 ~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-------------------  342 (432)
                      ..++++.+..... .+++++|.||++||++|+.+.+.+.+++..+.+  ++.++.++++..                   
T Consensus        15 ~~~~g~~~~~~~~-~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~   91 (148)
T 2b5x_A           15 AWLNGEVTREQLI-GEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQD--QLNVVAVHMPRSEDDLDPGKIKETAAEHDIT   91 (148)
T ss_dssp             EEESCCCCHHHHT-TTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT--TSEEEEEECCCSTTTSSHHHHHHHHHHTTCC
T ss_pred             ccccCcccchhhc-CCCEEEEEEEcCCCHHHHHHhHHHHHHHHHhcC--CcEEEEEEcCCCccccCHHHHHHHHHHcCCC
Confidence            5677777765433 568999999999999999999999999999987  389999987531                   


Q ss_pred             --------cc--ccCCCCCCceEEEE-eCCCcccCceeccCCCCHHHHHHHHHhcCCC
Q 013976          343 --------EH--HRAKSDGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNASI  389 (432)
Q Consensus       343 --------~~--~~~~i~~~P~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~  389 (432)
                              ..  ..+++.++|+++++ ++|..+.   .+.|..+.+.|.++|++.++.
T Consensus        92 ~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~---~~~g~~~~~~l~~~l~~~l~~  146 (148)
T 2b5x_A           92 QPIFVDSDHALTDAFENEYVPAYYVFDKTGQLRH---FQAGGSGMKMLEKRVNRVLAE  146 (148)
T ss_dssp             SCEEECSSCHHHHHTCCCCSSEEEEECTTCBEEE---EEESCSTTHHHHHHHHHHHTT
T ss_pred             cceEECCchhHHHHhCCCCCCEEEEECCCCcEEE---EecCCCCHHHHHHHHHHHHhc
Confidence                    11  46899999999999 6776543   677888999999999987653

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=99.18  E-value=1.4e-10  Score=89.10  Aligned_cols=103  Identities=19%  Similarity=0.284  Sum_probs=87.6

Q ss_pred             ceeecCCCchhh-hccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcE
Q 013976          152 LVTIFTRENAPS-VFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKV  229 (432)
Q Consensus       152 ~v~~l~~~~~~~-~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~  229 (432)
                      .+..++.+++.. +...++++++.||++| +.|+.+.+.+.+++.++.+++.|+.+|++.   ++.+++.||+.+.  |+
T Consensus         3 ~v~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~v~~~--Pt   77 (108)
T 2trx_A            3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQ---NPGTAPKYGIRGI--PT   77 (108)
T ss_dssp             TEEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTT---CTTHHHHTTCCSS--SE
T ss_pred             cceecchhhHHHHHHhcCCeEEEEEECCCCHhHHHHHHHHHHHHHHhCCCcEEEEEECCC---CHHHHHHcCCccc--CE
Confidence            477899999985 4466778888899999 999999999999999999889999999988   5689999999988  99


Q ss_pred             EEEEeCCCCceecCCCCCCHHHHHHHHHHHh
Q 013976          230 LAYTGNDDAKKHILDGELTLDKIKTFGEDFL  260 (432)
Q Consensus       230 i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~  260 (432)
                      ++++..+ .....+.|..+.+.|.+|+++.+
T Consensus        78 ~~~~~~G-~~~~~~~G~~~~~~l~~~l~~~l  107 (108)
T 2trx_A           78 LLLFKNG-EVAATKVGALSKGQLKEFLDANL  107 (108)
T ss_dssp             EEEEETT-EEEEEEESCCCHHHHHHHHHHHH
T ss_pred             EEEEeCC-EEEEEEecCCCHHHHHHHHHHhh
Confidence            9888433 33455678899999999999875

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.17  E-value=1.2e-10  Score=93.45  Aligned_cols=98  Identities=18%  Similarity=0.344  Sum_probs=76.1

Q ss_pred             EEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCc-------------------
Q 013976          282 KIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN-------------------  342 (432)
Q Consensus       282 ~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-------------------  342 (432)
                      ..++++.+.-.. -.+++++|.||++||++|+.+.+.+.+++..+.   ++.++.++++.+                   
T Consensus        10 ~~~~g~~~~l~~-~~~k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~   85 (136)
T 1lu4_A           10 TTLSGAPFDGAS-LQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP---AVTFVGIATRADVGAMQSFVSKYNLNFTNLN   85 (136)
T ss_dssp             EBTTSCEEEGGG-GTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEECSSCHHHHHHHHHHHTCCSEEEE
T ss_pred             ecCCCCeecHHH-hCCCEEEEEEECCcChhHHHHHHHHHHHHHHCC---CcEEEEEEcCCCHHHHHHHHHHcCCCceEEE
Confidence            333444443322 246899999999999999999999999999997   589999998762                   


Q ss_pred             ---cc--ccCCCCCCceEEEE-eCCCcccCceecc---CCCCHHHHHHHHHhcC
Q 013976          343 ---EH--HRAKSDGFPTILFF-PAGNKSFDPINVD---VDRTVVALYKFLKKNA  387 (432)
Q Consensus       343 ---~~--~~~~i~~~P~i~~~-~~g~~~~~~~~y~---g~~~~~~l~~fi~~~~  387 (432)
                         ..  ..+++.++|+++++ ++|..+    .+.   |..+.+.|.++|++.+
T Consensus        86 d~~~~~~~~~~i~~~P~~~lid~~G~i~----~~~~~~g~~~~~~l~~~l~~ll  135 (136)
T 1lu4_A           86 DADGVIWARYNVPWQPAFVFYRADGTST----FVNNPTAAMSQDELSGRVAALT  135 (136)
T ss_dssp             CTTSHHHHHTTCCSSSEEEEECTTSCEE----EECCSSSCCCHHHHHHHHHHC-
T ss_pred             CCchhHHHhcCCCCCCEEEEECCCCcEE----EEEcCCCccCHHHHHHHHHHHh
Confidence               22  46899999999999 455432    677   8899999999999865

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=99.17  E-value=6e-11  Score=91.75  Aligned_cols=104  Identities=17%  Similarity=0.316  Sum_probs=89.8

Q ss_pred             ceeecCCCchhhhc-cCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcE
Q 013976          152 LVTIFTRENAPSVF-ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKV  229 (432)
Q Consensus       152 ~v~~l~~~~~~~~~-~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~  229 (432)
                      .+..++.+++...+ ..++++++.||++| +.|+.+.+.+.++++++.+++.|+.+|++.   ++.+++.|++.+.  |+
T Consensus         5 ~v~~l~~~~~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~---~~~l~~~~~v~~~--Pt   79 (111)
T 3gnj_A            5 SLEKLDTNTFEQLIYDEGKACLVMFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVEE---EKTLFQRFSLKGV--PQ   79 (111)
T ss_dssp             CSEECCHHHHHHHHTTSCCCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTSEEEEEETTT---CHHHHHHTTCCSS--CE
T ss_pred             cceecCHHHHHHHHHhcCCEEEEEEeCCCChhHHHHHHHHHHHHHHcCCceEEEEEECCc---ChhHHHhcCCCcC--CE
Confidence            46778899998877 67778889999999 999999999999999999899999999998   5689999999988  99


Q ss_pred             EEEEeCCCCceecCCCCCCHHHHHHHHHHHhc
Q 013976          230 LAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  261 (432)
Q Consensus       230 i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  261 (432)
                      ++++.++. ....+.|..+.+.|.+|+++++.
T Consensus        80 ~~~~~~g~-~~~~~~g~~~~~~l~~~l~~~l~  110 (111)
T 3gnj_A           80 ILYFKDGE-YKGKMAGDVEDDEVEQMIADVLE  110 (111)
T ss_dssp             EEEEETTE-EEEEEESSCCHHHHHHHHHHHHH
T ss_pred             EEEEECCE-EEEEEeccCCHHHHHHHHHHHhc
Confidence            98885442 34457788999999999998764

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=99.17  E-value=6.9e-11  Score=90.42  Aligned_cols=102  Identities=18%  Similarity=0.186  Sum_probs=87.9

Q ss_pred             eeecCCCchhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEE
Q 013976          153 VTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLA  231 (432)
Q Consensus       153 v~~l~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~  231 (432)
                      +.+++.+++......++++++.||++| +.|+.+.+.+.++++++.+++.|+.+|++.   ++.+++.||+.+.  |+++
T Consensus         2 v~~l~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~---~~~~~~~~~v~~~--Pt~~   76 (105)
T 1nsw_A            2 TMTLTDANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDE---NPETTSQFGIMSI--PTLI   76 (105)
T ss_dssp             CEEECTTTHHHHHSSSSCEEEEEECTTCHHHHHHHHHHHHHHHHSTTTCEEEEEETTT---CHHHHHHTTCCSS--SEEE
T ss_pred             ceeccHHhHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECcC---CHHHHHHcCCccc--cEEE
Confidence            567899999988888888889999999 999999999999999999889999999988   5689999999988  9999


Q ss_pred             EEeCCCCceecCCCCCCHHHHHHHHHHHh
Q 013976          232 YTGNDDAKKHILDGELTLDKIKTFGEDFL  260 (432)
Q Consensus       232 i~~~~~~~~y~~~~~~~~~~i~~fi~~~~  260 (432)
                      ++.++ .....+.|..+.+.+.+|+++++
T Consensus        77 ~~~~G-~~~~~~~G~~~~~~l~~~l~~~l  104 (105)
T 1nsw_A           77 LFKGG-RPVKQLIGYQPKEQLEAQLADVL  104 (105)
T ss_dssp             EEETT-EEEEEEESCCCHHHHHHHTTTTT
T ss_pred             EEeCC-eEEEEEecCCCHHHHHHHHHHHh
Confidence            88443 33455678899999999998764

>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13

Probab=99.17  E-value=6.4e-12  Score=107.66  Aligned_cols=115  Identities=15%  Similarity=0.264  Sum_probs=84.2

Q ss_pred             chhhhhCCCCCCCcEEEEEeCCCCceecCC-CCCCHHHHHHHHHHHhcCCcCccccCCCCCCCCCCceEEEecccchhhh
Q 013976          215 PVSEYFGITGEAPKVLAYTGNDDAKKHILD-GELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIV  293 (432)
Q Consensus       215 ~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~-~~~~~~~i~~fi~~~~~g~l~~~~~se~~p~~~~~~v~~l~~~~~~~~~  293 (432)
                      ...+.+|+++.  |++++  +   .+|... +.++.+++..|+++++.  +.+++.|+++|.....   ...+.+|..+.
T Consensus        41 ~~a~~~gi~gv--P~fvi--n---gk~~~~~~~~~~~~~~~f~~~~~~--l~~~L~s~~~p~~~~~---~~~g~~y~~l~  108 (197)
T 1un2_A           41 KAAADVQLRGV--PAMFV--N---GKYQLNPQGMDTSNMDVFVQQYAD--TVKYLSEKKGGGTGAQ---YEDGKQYTTLE  108 (197)
T ss_dssp             HHHHHTTCCSS--SEEEE--T---TTEEECGGGSCCSSHHHHHHHHHH--HHHHHTC------------CCBTTTEEECS
T ss_pred             HHHHHcCCCcC--CEEEE--c---ceEecCccccccccHHHHHHHHHH--HHHHHHhCcccccccc---cCCCCCceEcc
Confidence            45788999987  99966  1   234443 35677889999999988  8899999988875432   34677777654


Q ss_pred             h-cCCCcEEEEEeCCCChhhhhhHHHH---HHHHHHhcCCCCEEEEEEeCCCcc
Q 013976          294 L-DESKDVLLEIYAPWCGHCQAFEPTY---NKLAKHLRGVDSIVIAKMDGTTNE  343 (432)
Q Consensus       294 ~-~~~~~~lv~f~~~~c~~c~~~~~~~---~~la~~~~~~~~~~~~~id~~~~~  343 (432)
                      . ...+++||.||+.||+||+.+.|.|   .++++.+.+  ++.|.++++..+.
T Consensus       109 ~p~~~~~~vveFf~~~C~~C~~~~p~~~~~~~l~~~~~~--~v~~~~~~v~~~~  160 (197)
T 1un2_A          109 KPVAGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPE--GVKMTKYHVNFMG  160 (197)
T ss_dssp             SCCTTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCT--TCCEEEEECSSSS
T ss_pred             CCCCCCCEEEEEECCCChhHHHhCcccccHHHHHHHCCC--CCEEEEeccCcCC
Confidence            3 3357899999999999999999999   999999876  7999999988763

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=99.16  E-value=8.4e-11  Score=95.77  Aligned_cols=88  Identities=14%  Similarity=0.192  Sum_probs=63.4

Q ss_pred             cCCCcEEEEEeCCCChhhhhhHHHHHHHHH---HhcCCCCEEEEEEeCCCccc-ccCCCCCCceEEEEe-CCCcccCcee
Q 013976          295 DESKDVLLEIYAPWCGHCQAFEPTYNKLAK---HLRGVDSIVIAKMDGTTNEH-HRAKSDGFPTILFFP-AGNKSFDPIN  369 (432)
Q Consensus       295 ~~~~~~lv~f~~~~c~~c~~~~~~~~~la~---~~~~~~~~~~~~id~~~~~~-~~~~i~~~P~i~~~~-~g~~~~~~~~  369 (432)
                      ..+++++|.|||+||++|+.+.|.+.+...   ..+.  ++..+.+|.+..+. ..+++.++||+++|. +|+.+.   +
T Consensus        42 ~~~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~~~--~fv~V~vD~e~~~~~~~~~v~~~PT~~f~~~~G~~v~---~  116 (151)
T 3ph9_A           42 KSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQN--KFIMLNLMHETTDKNLSPDGQYVPRIMFVDPSLTVRA---D  116 (151)
T ss_dssp             HHTCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHHHH--TCEEEEESSCCSCGGGCTTCCCSSEEEEECTTSCBCT---T
T ss_pred             HcCCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHhhc--CeEEEEecCCchhhHhhcCCCCCCEEEEECCCCCEEE---E
Confidence            457999999999999999999999987532   2221  35555555322222 578999999999997 887765   4


Q ss_pred             ccCC----------CCHHHHHHHHHhcC
Q 013976          370 VDVD----------RTVVALYKFLKKNA  387 (432)
Q Consensus       370 y~g~----------~~~~~l~~fi~~~~  387 (432)
                      ..|.          .+...+++.|++.+
T Consensus       117 ~~G~~~~~~~~~~~~~~~~ll~~~~~al  144 (151)
T 3ph9_A          117 IAGRYSNRLYTYEPRDLPLLIENMKKAL  144 (151)
T ss_dssp             CCCSCTTSTTCCCGGGHHHHHHHHHHHH
T ss_pred             EeCCcCCcccccchhhHHHHHHHHHHHH
Confidence            4554          45677777777654

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.16  E-value=1.7e-10  Score=92.38  Aligned_cols=108  Identities=19%  Similarity=0.184  Sum_probs=92.6

Q ss_pred             CceeecCCCchhhhc-cCCCcceEEEEEeC-cchhhhHHHHHHHHHhcc----CceEEEEEecCCcccccchhhhhCCCC
Q 013976          151 PLVTIFTRENAPSVF-ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFK----GKLIFVYVQMDNEDVGKPVSEYFGITG  224 (432)
Q Consensus       151 p~v~~l~~~~~~~~~-~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~----~~i~f~~vd~~~~~~~~~l~~~~~i~~  224 (432)
                      ..+..++.+++...+ ..++++++.||++| +.|+.+.+.+.+++.++.    +++.|+.+|++.   ++.+++.|++..
T Consensus         7 ~~v~~l~~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~---~~~l~~~~~v~~   83 (133)
T 1x5d_A            7 GDVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATV---NQVLASRYGIRG   83 (133)
T ss_dssp             CSCEECCTTHHHHHTTTSSSEEEEEEECTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTT---CCHHHHHHTCCS
T ss_pred             CcCEEcCHhhHHHHHhcCCCeEEEEEECCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCC---CHHHHHhCCCCe
Confidence            457889999998764 56677888899999 999999999999999998    789999999998   568999999998


Q ss_pred             CCCcEEEEEeCCCCceecCCCCCCHHHHHHHHHHHhcCCc
Q 013976          225 EAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKL  264 (432)
Q Consensus       225 ~~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g~l  264 (432)
                      .  |+++++..+. ....+.|..+.+.|.+|+.+.+....
T Consensus        84 ~--Pt~~~~~~g~-~~~~~~G~~~~~~l~~~l~~~~~~~~  120 (133)
T 1x5d_A           84 F--PTIKIFQKGE-SPVDYDGGRTRSDIVSRALDLFSDNA  120 (133)
T ss_dssp             S--SEEEEEETTE-EEEEECSCCSHHHHHHHHHHHHHHHS
T ss_pred             e--CeEEEEeCCC-ceEEecCCCCHHHHHHHHHHHhhccC
Confidence            8  9999997743 45667899999999999999987543

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=99.16  E-value=1.9e-10  Score=89.40  Aligned_cols=106  Identities=16%  Similarity=0.242  Sum_probs=89.6

Q ss_pred             CceeecCCCchhhh-ccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCc
Q 013976          151 PLVTIFTRENAPSV-FESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPK  228 (432)
Q Consensus       151 p~v~~l~~~~~~~~-~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P  228 (432)
                      ..+..++.+++... ...+++++++||++| +.|+.+.+.+.+++..+.+++.|+.+|++.   ++.+++.||+...  |
T Consensus         7 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~---~~~~~~~~~v~~~--P   81 (115)
T 1thx_A            7 KGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDP---NPTTVKKYKVEGV--P   81 (115)
T ss_dssp             CSEEECCGGGHHHHTTTCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTT---CHHHHHHTTCCSS--S
T ss_pred             CceEEeeccchhhHhhcCCceEEEEEECCCCHHHHHhHHHHHHHHHHhCCcEEEEEEEcCC---CHHHHHHcCCCce--e
Confidence            45788999999865 456778888999999 999999999999999999889999999998   5689999999988  9


Q ss_pred             EEEEEeCCCCceecCCCCCCHHHHHHHHHHHhcC
Q 013976          229 VLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEG  262 (432)
Q Consensus       229 ~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g  262 (432)
                      +++++.++ .....+.|..+.+.+.+|++.++++
T Consensus        82 t~~~~~~G-~~~~~~~g~~~~~~l~~~l~~~l~~  114 (115)
T 1thx_A           82 ALRLVKGE-QILDSTEGVISKDKLLSFLDTHLNN  114 (115)
T ss_dssp             EEEEEETT-EEEEEEESCCCHHHHHHHHHHHHC-
T ss_pred             EEEEEcCC-EEEEEecCCCCHHHHHHHHHHHhcC
Confidence            99988433 3445567889999999999998753

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=99.16  E-value=2.8e-11  Score=98.05  Aligned_cols=109  Identities=16%  Similarity=0.203  Sum_probs=93.4

Q ss_pred             CCceeecCCCchh-hhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCC
Q 013976          150 LPLVTIFTRENAP-SVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAP  227 (432)
Q Consensus       150 ~p~v~~l~~~~~~-~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~  227 (432)
                      .+.+..++.+++. .+...++++++.||++| +.|+.+.+.|.+++.++.+++.|+.+|++.   .+.+++.|++.+.  
T Consensus         5 ~~~v~~l~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~---~~~l~~~~~v~~~--   79 (140)
T 3hz4_A            5 GSSIIEFEDMTWSQQVEDSKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSSAVFGRINIAT---NPWTAEKYGVQGT--   79 (140)
T ss_dssp             TTTEEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEETTT---CHHHHHHHTCCEE--
T ss_pred             CcceEEcchHhHHHHHHhCCCcEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCc---CHhHHHHCCCCcC--
Confidence            3568889999998 56677778889999999 999999999999999999999999999998   5689999999988  


Q ss_pred             cEEEEEeCCCCceecCCCCCCHHHHHHHHHHHhcCCc
Q 013976          228 KVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKL  264 (432)
Q Consensus       228 P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g~l  264 (432)
                      |+++++.++ .....+.|..+.+.|.+|++.++....
T Consensus        80 Pt~~~~~~G-~~~~~~~G~~~~~~l~~~l~~~l~~~~  115 (140)
T 3hz4_A           80 PTFKFFCHG-RPVWEQVGQIYPSILKNAVRDMLQHGE  115 (140)
T ss_dssp             SEEEEEETT-EEEEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEeCC-cEEEEEcCCCCHHHHHHHHHHHhcccc
Confidence            999988544 244567888999999999999986443

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=99.15  E-value=9.9e-11  Score=90.06  Aligned_cols=103  Identities=16%  Similarity=0.179  Sum_probs=88.9

Q ss_pred             eeecCCCchhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEE
Q 013976          153 VTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLA  231 (432)
Q Consensus       153 v~~l~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~  231 (432)
                      +.+++.+++......+++++++||++| +.|+.+.+.+.+++..+.+++.|+.+|++.   ++.+++.|++.+.  |+++
T Consensus         3 v~~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~v~~~--Pt~~   77 (109)
T 2yzu_A            3 PIEVTDQNFDETLGQHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEGKLLVAKLDVDE---NPKTAMRYRVMSI--PTVI   77 (109)
T ss_dssp             CEECCTTTHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTT---CHHHHHHTTCCSS--SEEE
T ss_pred             ceEccHhHHHHHhcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhCceEEEEEECCC---CHhHHHhCCCCcC--CEEE
Confidence            678899999988888888889999999 999999999999999999889999999988   5689999999988  9998


Q ss_pred             EEeCCCCceecCCCCCCHHHHHHHHHHHhc
Q 013976          232 YTGNDDAKKHILDGELTLDKIKTFGEDFLE  261 (432)
Q Consensus       232 i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  261 (432)
                      ++.++ .....+.|..+.+.+.+|+.+.+.
T Consensus        78 ~~~~g-~~~~~~~g~~~~~~l~~~l~~~l~  106 (109)
T 2yzu_A           78 LFKDG-QPVEVLVGAQPKRNYQAKIEKHLP  106 (109)
T ss_dssp             EEETT-EEEEEEESCCCHHHHHHHHHTTC-
T ss_pred             EEeCC-cEeeeEeCCCCHHHHHHHHHHHhh
Confidence            88443 334456788999999999998765

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=99.15  E-value=4.4e-11  Score=99.63  Aligned_cols=89  Identities=18%  Similarity=0.326  Sum_probs=69.0

Q ss_pred             cCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc---ccCCC--CCCceEEEE-eCCCcccCce
Q 013976          295 DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH---HRAKS--DGFPTILFF-PAGNKSFDPI  368 (432)
Q Consensus       295 ~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~---~~~~i--~~~P~i~~~-~~g~~~~~~~  368 (432)
                      ..++++||.||++||++|+.+.|.|.+++..+..  ++.|+.+|++.+..   ..+.+  .++|++++| ++|+.+.   
T Consensus        44 ~~~k~vlv~F~a~WC~~C~~~~p~l~~~~~~~~~--~~~~~~v~~d~~~~~~~~~~~~~~~~~Pt~~~~d~~G~~~~---  118 (164)
T 1sen_A           44 ASGLPLMVIIHKSWCGACKALKPKFAESTEISEL--SHNFVMVNLEDEEEPKDEDFSPDGGYIPRILFLDPSGKVHP---  118 (164)
T ss_dssp             HHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHH--HTTSEEEEEEGGGSCSCGGGCTTCSCSSEEEEECTTSCBCT---
T ss_pred             hcCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhc--CCeEEEEEecCCchHHHHHhcccCCcCCeEEEECCCCCEEE---
Confidence            4578999999999999999999999998876654  34555666655433   45666  679999999 7887764   


Q ss_pred             eccC----------CCCHHHHHHHHHhcCC
Q 013976          369 NVDV----------DRTVVALYKFLKKNAS  388 (432)
Q Consensus       369 ~y~g----------~~~~~~l~~fi~~~~~  388 (432)
                      .+.|          ..+.+.|.++|++.+.
T Consensus       119 ~~~G~~~~~~~~~~~~~~~~l~~~l~~~l~  148 (164)
T 1sen_A          119 EIINENGNPSYKYFYVSAEQVVQGMKEAQE  148 (164)
T ss_dssp             TCCCTTSCTTSTTCCCSHHHHHHHHHHHHH
T ss_pred             EEeCCCCccchhcccCCHHHHHHHHHHHHH
Confidence            4555          3789999999998764

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=99.15  E-value=1.5e-10  Score=93.84  Aligned_cols=105  Identities=17%  Similarity=0.257  Sum_probs=87.0

Q ss_pred             CceeecCCCchhhhcc------------CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchh
Q 013976          151 PLVTIFTRENAPSVFE------------SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVS  217 (432)
Q Consensus       151 p~v~~l~~~~~~~~~~------------~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~  217 (432)
                      +.+..++.++|...+.            .++++++.||++| ++|+.+.+.+.+++..+.+++.|+.+|++.   ++.++
T Consensus        22 ~~v~~l~~~~f~~~l~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~~   98 (141)
T 3hxs_A           22 SGTIHLTRAEFLKKIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDK---EPELA   98 (141)
T ss_dssp             -CCEECCHHHHHHHTCCCSSCCCCCCCCCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEETTT---CHHHH
T ss_pred             CCcccccHHHHHHHhhccccchhHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCceEEEEEECCC---CHHHH
Confidence            3456666666665443            3667889999999 999999999999999999999999999998   56899


Q ss_pred             hhhCCCCCCCcEEEEEeCCCCceecCCCCCCHHHHHHHHHHHhc
Q 013976          218 EYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  261 (432)
Q Consensus       218 ~~~~i~~~~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  261 (432)
                      +.||+.+.  |++++++.++ ....+.|..+.+.|.+||+.++.
T Consensus        99 ~~~~v~~~--Pt~~~~~~~g-~~~~~~G~~~~~~l~~~l~~~l~  139 (141)
T 3hxs_A           99 RDFGIQSI--PTIWFVPMKG-EPQVNMGALSKEQLKGYIDKVLL  139 (141)
T ss_dssp             HHTTCCSS--SEEEEECSSS-CCEEEESCCCHHHHHHHHHHTTC
T ss_pred             HHcCCCCc--CEEEEEeCCC-CEEEEeCCCCHHHHHHHHHHHHc
Confidence            99999988  9999986554 33467888999999999999875

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=99.14  E-value=1.8e-10  Score=95.86  Aligned_cols=105  Identities=18%  Similarity=0.285  Sum_probs=81.8

Q ss_pred             eEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccC-----------
Q 013976          281 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRA-----------  347 (432)
Q Consensus       281 v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~-----------  347 (432)
                      +..++++.+.-... .++++||.||++||++|+.+.+.+.+++..+++. ++.++.|+++....  ..+           
T Consensus        19 l~~~~g~~~~l~~~-~gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~~-~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~   96 (165)
T 3or5_A           19 GVTVDGKPFSSASL-KGKAYIVNFFATWCPPCRSEIPDMVQVQKTWASR-GFTFVGIAVNEQLPNVKNYMKTQGIIYPVM   96 (165)
T ss_dssp             EECTTSCEEEGGGG-TTCEEEEEEECTTSHHHHHHHHHHHHHHHHHTTT-TEEEEEEECSCCHHHHHHHHHHHTCCSCEE
T ss_pred             eeCCCCCEechhHc-CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccC-CeEEEEEECCCCHHHHHHHHHHcCCCCceE
Confidence            44445555443322 4689999999999999999999999999999874 69999999886543  233           


Q ss_pred             ----------------CCCCCceEEEE-eCCCcccCceeccCCCCHHHHHHHHHhcCCCC
Q 013976          348 ----------------KSDGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNASIP  390 (432)
Q Consensus       348 ----------------~i~~~P~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~  390 (432)
                                      ++.++|+++++ ++|..+.   .+.|..+.+.|.++|++.+...
T Consensus        97 ~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~---~~~g~~~~~~l~~~l~~~l~~~  153 (165)
T 3or5_A           97 MATPELIRAFNGYIDGGITGIPTSFVIDASGNVSG---VIVGPRSKADFDRIVKMALGAK  153 (165)
T ss_dssp             ECCHHHHHHHHTTSTTCSCSSSEEEEECTTSBEEE---EECSCCCHHHHHHHHHHHHC--
T ss_pred             ecCHHHHHHHhhhhccCCCCCCeEEEECCCCcEEE---EEcCCCCHHHHHHHHHHHHhhh
Confidence                            79999999999 6666543   7889899999999999987643

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=99.14  E-value=1.9e-10  Score=91.51  Aligned_cols=103  Identities=19%  Similarity=0.288  Sum_probs=87.6

Q ss_pred             ceeecCCCchhh-hccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcE
Q 013976          152 LVTIFTRENAPS-VFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKV  229 (432)
Q Consensus       152 ~v~~l~~~~~~~-~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~  229 (432)
                      .+..++.+++.. +...++++++.||++| +.|+.+.+.+.++++.+.+++.|+.+|++.   ++.+++.|++...  |+
T Consensus        23 ~v~~l~~~~f~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~~~---~~~l~~~~~v~~~--Pt   97 (128)
T 2o8v_B           23 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQ---NPGTAPKYGIRGI--PT   97 (128)
T ss_dssp             CSEEECTTTHHHHTTTCSSEEEEEEECSSCHHHHHTHHHHHHHHHHTTTTEEEEEEETTT---CCTTSGGGTCCSS--SE
T ss_pred             ccEecChhhHHHHHHhcCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCC---CHHHHHHcCCCcc--CE
Confidence            367889999985 4466778889999999 999999999999999999889999999998   5689999999988  99


Q ss_pred             EEEEeCCCCceecCCCCCCHHHHHHHHHHHh
Q 013976          230 LAYTGNDDAKKHILDGELTLDKIKTFGEDFL  260 (432)
Q Consensus       230 i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~  260 (432)
                      ++++.++ .....+.|..+.+.|.+|+++++
T Consensus        98 ~~~~~~G-~~~~~~~G~~~~~~l~~~l~~~l  127 (128)
T 2o8v_B           98 LLLFKNG-EVAATKVGALSKGQLKEFLDANL  127 (128)
T ss_dssp             EEEEETT-EEEEEEESCCCHHHHHHHHHHHH
T ss_pred             EEEEeCC-EEEEEEcCCCCHHHHHHHHHHhh
Confidence            9988433 34455788899999999999875

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A

Probab=99.14  E-value=3.1e-10  Score=100.17  Aligned_cols=147  Identities=12%  Similarity=0.023  Sum_probs=111.6

Q ss_pred             CceeecCCCchhhhccCCCcceEEEE--EeCcchhhhHHHHHHHHHhcc---CceEEEEEecCCc--ccccchhhhhCCC
Q 013976          151 PLVTIFTRENAPSVFESPIKNQLLLF--AVSNDSEKLLPVFEEAAKSFK---GKLIFVYVQMDNE--DVGKPVSEYFGIT  223 (432)
Q Consensus       151 p~v~~l~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~~~~~~~a~~~~---~~i~f~~vd~~~~--~~~~~l~~~~~i~  223 (432)
                      +.+..++..+|..++..+.+++|.||  ++|..   +.|.|.++|..+.   +++.|+.|||+.+  .-++.+|+.|+|+
T Consensus        16 ~~v~~Lt~~nF~~vi~~~~~vlV~Fy~~ApWCg---l~P~~e~lA~~~~~~~~~v~~akVD~d~~g~~~n~~la~~~~V~   92 (248)
T 2c0g_A           16 TGCVDLDELSFEKTVERFPYSVVKFDIASPYGE---KHEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKVD   92 (248)
T ss_dssp             TTCEECCTTTHHHHHTTSSEEEEEEEESSCCSH---HHHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTTCC
T ss_pred             CCcEECCHHHHHHHHhcCCCEEEEEECCCCCCc---cHHHHHHHHHHHhccCCCeEEEEEECCcccccccHHHHHHhCCC
Confidence            45788999999998877778888899  88843   9999999999995   4799999999872  1146899999999


Q ss_pred             --CCCCcEEEEEeCCC-CceecC--CCCCCHHHHHHHHHHHhcCCcCccccCCCCCCCCCCceEEEecccchhhhhcCCC
Q 013976          224 --GEAPKVLAYTGNDD-AKKHIL--DGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESK  298 (432)
Q Consensus       224 --~~~~P~i~i~~~~~-~~~y~~--~~~~~~~~i~~fi~~~~~g~l~~~~~se~~p~~~~~~v~~l~~~~~~~~~~~~~~  298 (432)
                        ++  |++.++. +. .....|  .|.++.+.|.+||.+.....     .  ..+    +     +-..++.++.    
T Consensus        93 ~~~~--PTl~~F~-G~~~~~~~y~~~G~~~~~~L~~fi~~~~~~~-----~--~~~----g-----~i~~~d~l~~----  149 (248)
T 2c0g_A           93 DKNF--PSIFLFK-GNADEYVQLPSHVDVTLDNLKAFVSANTPLY-----I--GRD----G-----CIKEFNEVLK----  149 (248)
T ss_dssp             TTSC--CEEEEES-SSSSSEEECCTTSCCCHHHHHHHHHHHSSCC-----C--CCT----T-----CCHHHHHHHT----
T ss_pred             cCCC--CeEEEEe-CCcCcceeecccCCCCHHHHHHHHHHhhccc-----c--CCC----C-----chHHHHHHHH----
Confidence              77  9999997 54 235567  89999999999999976411     0  011    1     1134555442    


Q ss_pred             cEEEEEeCCCChhhhhhHHHHHHHHHHhc
Q 013976          299 DVLLEIYAPWCGHCQAFEPTYNKLAKHLR  327 (432)
Q Consensus       299 ~~lv~f~~~~c~~c~~~~~~~~~la~~~~  327 (432)
                          .|.+.||..|..+....++++..+.
T Consensus       150 ----~f~~~~~~~~~~~~~~~~~~~~~l~  174 (248)
T 2c0g_A          150 ----NYANIPDAEQLKLIEKLQAKQEQLT  174 (248)
T ss_dssp             ----TGGGSCHHHHHHHHHHHHHHHHHCC
T ss_pred             ----HHhcccchhHHHHHHHHHHHHHHcc
Confidence                2678889999888888888877763

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=99.14  E-value=2.5e-10  Score=91.50  Aligned_cols=101  Identities=21%  Similarity=0.306  Sum_probs=77.6

Q ss_pred             eEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCc------------------
Q 013976          281 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN------------------  342 (432)
Q Consensus       281 v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~------------------  342 (432)
                      +..+++..+.-... .+++++|.||++||++|+.+.+.+.+++..+.   ++.++.++++.+                  
T Consensus        10 ~~~~~g~~~~l~~~-~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~   85 (136)
T 1zzo_A           10 AKTLDGHDFHGESL-LGKPAVLWFWAPWCPTCQGEAPVVGQVAASHP---EVTFVGVAGLDQVPAMQEFVNKYPVKTFTQ   85 (136)
T ss_dssp             EEBTTSCEEEGGGG-TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEECSSCHHHHHHHHHHTTCTTSEE
T ss_pred             cccCCCCEeeHHHh-CCCeEEEEEEcCCChhHHHHHHHHHHHHHHcC---CeEEEEEeCCCCHHHHHHHHHHcCCCceEE
Confidence            34444555544332 46899999999999999999999999999987   588999998642                  


Q ss_pred             -----cc--ccCCCCCCceEEEEeCCCcccCceeccCCCCHHHHHHHHHhcCC
Q 013976          343 -----EH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNAS  388 (432)
Q Consensus       343 -----~~--~~~~i~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  388 (432)
                           ..  ..+++.++|+++++..+..+ .  .+.|..+.+.|.++|++.++
T Consensus        86 ~~d~~~~~~~~~~i~~~P~~~~id~~g~i-~--~~~g~~~~~~l~~~l~~~l~  135 (136)
T 1zzo_A           86 LADTDGSVWANFGVTQQPAYAFVDPHGNV-D--VVRGRMSQDELTRRVTALTS  135 (136)
T ss_dssp             EECTTCHHHHHTTCCSSSEEEEECTTCCE-E--EEESCCCHHHHHHHHHHHC-
T ss_pred             EEcCCcHHHHHcCCCCCceEEEECCCCCE-E--EEecCCCHHHHHHHHHHHhc
Confidence                 11  46899999999999543333 1  68899999999999998764

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=99.14  E-value=5.3e-11  Score=85.44  Aligned_cols=73  Identities=19%  Similarity=0.295  Sum_probs=60.0

Q ss_pred             EEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCcccccCCCCCCceEEEEeCCCcccCceeccCCC-CHHHH
Q 013976          301 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDR-TVVAL  379 (432)
Q Consensus       301 lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~~~~~i~~~P~i~~~~~g~~~~~~~~y~g~~-~~~~l  379 (432)
                      .|.||++||++|+.+.|.+.+++..+..  ++.++.+| +.....+++|.++|++++  +|+.+     +.|.. +.+.|
T Consensus         3 ~v~f~a~wC~~C~~~~~~l~~~~~~~~~--~~~~~~v~-~~~~~~~~~v~~~Pt~~~--~G~~~-----~~G~~~~~~~l   72 (77)
T 1ilo_A            3 KIQIYGTGCANCQMLEKNAREAVKELGI--DAEFEKIK-EMDQILEAGLTALPGLAV--DGELK-----IMGRVASKEEI   72 (77)
T ss_dssp             EEEEECSSSSTTHHHHHHHHHHHHHTTC--CEEEEEEC-SHHHHHHHTCSSSSCEEE--TTEEE-----ECSSCCCHHHH
T ss_pred             EEEEEcCCChhHHHHHHHHHHHHHHcCC--ceEEEEec-CHHHHHHCCCCcCCEEEE--CCEEE-----EcCCCCCHHHH
Confidence            5889999999999999999999999986  69999999 222226899999999999  66543     33876 89999


Q ss_pred             HHHH
Q 013976          380 YKFL  383 (432)
Q Consensus       380 ~~fi  383 (432)
                      .+||
T Consensus        73 ~~~l   76 (77)
T 1ilo_A           73 KKIL   76 (77)
T ss_dssp             HHHC
T ss_pred             HHHh
Confidence            8876

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=99.14  E-value=2.4e-10  Score=93.40  Aligned_cols=106  Identities=19%  Similarity=0.244  Sum_probs=93.1

Q ss_pred             CceeecCCCchhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcE
Q 013976          151 PLVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKV  229 (432)
Q Consensus       151 p~v~~l~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~  229 (432)
                      ..+..++.+++......++++++.||++| +.|+.+.+.|.+++.++.+++.|+.+|++.   ++.+++.|++.+.  |+
T Consensus        38 ~~v~~l~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~---~~~l~~~~~v~~~--Pt  112 (148)
T 3p2a_A           38 GEVINATAETLDKLLQDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEA---EPALSTRFRIRSI--PT  112 (148)
T ss_dssp             CCCEECCTTTHHHHTTCSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTCEEEEEETTT---CHHHHHHTTCCSS--SE
T ss_pred             CCceecCHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHHHHHHHHcCCceEEEEEECcC---CHHHHHHCCCCcc--CE
Confidence            35778999999988888888899999999 999999999999999999889999999998   5689999999988  99


Q ss_pred             EEEEeCCCCceecCCCCCCHHHHHHHHHHHhcC
Q 013976          230 LAYTGNDDAKKHILDGELTLDKIKTFGEDFLEG  262 (432)
Q Consensus       230 i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g  262 (432)
                      ++++.++ .....+.|..+.+.|.+|+++++.+
T Consensus       113 ~~~~~~G-~~~~~~~G~~~~~~l~~~l~~~l~~  144 (148)
T 3p2a_A          113 IMLYRNG-KMIDMLNGAVPKAPFDNWLDEQLSR  144 (148)
T ss_dssp             EEEEETT-EEEEEESSCCCHHHHHHHHHHHHHS
T ss_pred             EEEEECC-eEEEEEeCCCCHHHHHHHHHHHhcc
Confidence            9888644 3445678999999999999998864

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=99.13  E-value=2.5e-10  Score=87.48  Aligned_cols=102  Identities=14%  Similarity=0.146  Sum_probs=86.5

Q ss_pred             ceeecCCCchhhhc-cCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcE
Q 013976          152 LVTIFTRENAPSVF-ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKV  229 (432)
Q Consensus       152 ~v~~l~~~~~~~~~-~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~  229 (432)
                      .+..++.+++.... ..+++++++||++| +.|+.+.+.+.+++.++.+++.|+.+|++.   ++.+++.||+...  |+
T Consensus         3 ~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~v~~~--Pt   77 (107)
T 2i4a_A            3 HTLAVSDSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDD---NPETPNAYQVRSI--PT   77 (107)
T ss_dssp             CEEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTSEEEEEEETTT---CCHHHHHTTCCSS--SE
T ss_pred             ceeecchhhhhHHHHhCCCEEEEEEECCCChhHHHHhHHHHHHHHHhCCcEEEEEEECCC---CHHHHHhcCCCcc--CE
Confidence            47789999998654 56778888899999 999999999999999999889999999988   5689999999988  99


Q ss_pred             EEEEeCCCCceecCCCCCCHHHHHHHHHHH
Q 013976          230 LAYTGNDDAKKHILDGELTLDKIKTFGEDF  259 (432)
Q Consensus       230 i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~  259 (432)
                      ++++.++ .....+.|..+.+.|.+|++++
T Consensus        78 ~~~~~~G-~~~~~~~G~~~~~~l~~~l~~~  106 (107)
T 2i4a_A           78 LMLVRDG-KVIDKKVGALPKSQLKAWVESA  106 (107)
T ss_dssp             EEEEETT-EEEEEEESCCCHHHHHHHHHHT
T ss_pred             EEEEeCC-EEEEEecCCCCHHHHHHHHHhc
Confidence            9988433 3344567889999999999875

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=99.13  E-value=1.7e-10  Score=94.65  Aligned_cols=93  Identities=17%  Similarity=0.313  Sum_probs=76.0

Q ss_pred             CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCcc----------------------c--ccCCCCC
Q 013976          296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE----------------------H--HRAKSDG  351 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~----------------------~--~~~~i~~  351 (432)
                      .++++||.||++||++|+.+.+.+.+++..+.+. ++.++.|+++...                      .  ..+++.+
T Consensus        25 ~gk~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~~-~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  103 (151)
T 2f9s_A           25 KGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQ-GVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSP  103 (151)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGG-TEEEEEEEESCCHHHHHHHHHHHTCCSCEEEETTSHHHHHTTCCS
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccC-CeEEEEEECCCCHHHHHHHHHHcCCCceEEECCchHHHHhcCCCC
Confidence            4689999999999999999999999999999863 6889999886531                      1  4689999


Q ss_pred             CceEEEE-eCCCcccCceeccCCCCHHHHHHHHHhcCCCCCc
Q 013976          352 FPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNASIPFK  392 (432)
Q Consensus       352 ~P~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~~~  392 (432)
                      +|+++++ ++|..+.   .+.|..+.+.|.++|++.+.....
T Consensus       104 ~P~~~lid~~G~i~~---~~~G~~~~~~l~~~l~~ll~~~~~  142 (151)
T 2f9s_A          104 LPTTFLINPEGKVVK---VVTGTMTESMIHDYMNLIKPGETS  142 (151)
T ss_dssp             SCEEEEECTTSEEEE---EEESCCCHHHHHHHHHHHSCC---
T ss_pred             CCeEEEECCCCcEEE---EEeCCCCHHHHHHHHHHHHhhhhc
Confidence            9999999 6676553   677888999999999998765443

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=99.13  E-value=1.8e-10  Score=87.72  Aligned_cols=102  Identities=16%  Similarity=0.197  Sum_probs=87.8

Q ss_pred             eeecCCCchhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEE
Q 013976          153 VTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLA  231 (432)
Q Consensus       153 v~~l~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~  231 (432)
                      |.+++.+++......++++++.||++| +.|+.+.+.+.+++..+.+ +.|+.+|++.   ++.+++.|++...  |+++
T Consensus         1 V~~l~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~v~~~~---~~~~~~~~~v~~~--Pt~~   74 (104)
T 2e0q_A            1 VIHLDSKNFDSFLASHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQ-VGFGKLNSDE---NPDIAARYGVMSL--PTVI   74 (104)
T ss_dssp             CEECCTTTHHHHHHHSSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTT---CHHHHHHTTCCSS--CEEE
T ss_pred             CeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHhHHHHHHHHHcCC-ceEEEEECCC---CHHHHHhCCcccc--CEEE
Confidence            457889999988887878889999999 9999999999999999988 9999999988   5689999999988  9999


Q ss_pred             EEeCCCCceecCCCCCCHHHHHHHHHHHhc
Q 013976          232 YTGNDDAKKHILDGELTLDKIKTFGEDFLE  261 (432)
Q Consensus       232 i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  261 (432)
                      ++.++ .....+.|..+.+.+.+|++++++
T Consensus        75 ~~~~g-~~~~~~~g~~~~~~l~~~l~~~l~  103 (104)
T 2e0q_A           75 FFKDG-EPVDEIIGAVPREEIEIRIKNLLG  103 (104)
T ss_dssp             EEETT-EEEEEEESCCCHHHHHHHHHHHHT
T ss_pred             EEECC-eEhhhccCCCCHHHHHHHHHHHhc
Confidence            88443 334556788999999999998764

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=99.12  E-value=1.7e-10  Score=94.66  Aligned_cols=91  Identities=16%  Similarity=0.234  Sum_probs=74.5

Q ss_pred             CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--------------------------ccCC-
Q 013976          296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--------------------------HRAK-  348 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--------------------------~~~~-  348 (432)
                      .++++||.||++||++|+.+.|.+.+++..+++. ++.++.|+++....                          ..++ 
T Consensus        23 ~gk~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~-~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (151)
T 3raz_A           23 KAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKKG-SVDMVGIALDTSDNIGNFLKQTPVSYPIWRYTGANSRNFMKTYGN  101 (151)
T ss_dssp             CSSEEEEEEECTTCHHHHHHHHHHHHHHHTSCTT-TEEEEEEESSCHHHHHHHHHHSCCSSCEEEECCSCHHHHHHTTTC
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccC-CeEEEEEECCChHHHHHHHHHcCCCCceEecCccchHHHHHHhCC
Confidence            4689999999999999999999999999999653 79999999863111                          3466 


Q ss_pred             -CCCCceEEEE-eCCCcccCceeccCCCCHHHHHHHHHhcCCCC
Q 013976          349 -SDGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNASIP  390 (432)
Q Consensus       349 -i~~~P~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~  390 (432)
                       +.++|+++++ ++|..+.   .+.|..+.+.|.++|++..+..
T Consensus       102 ~v~~~P~~~lid~~G~i~~---~~~g~~~~~~l~~~l~~l~~~~  142 (151)
T 3raz_A          102 TVGVLPFTVVEAPKCGYRQ---TITGEVNEKSLTDAVKLAHSKC  142 (151)
T ss_dssp             CSCCSSEEEEEETTTTEEE---ECCSCCCHHHHHHHHHHHHTC-
T ss_pred             ccCCCCEEEEECCCCcEEE---EECCCCCHHHHHHHHHHHHHHh
Confidence             9999999999 6666554   7889999999999999876543

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=99.12  E-value=6.2e-10  Score=87.45  Aligned_cols=105  Identities=15%  Similarity=0.198  Sum_probs=87.6

Q ss_pred             CCceeecCCCchhhhc-cCCCcceEEEEEeC-cchhhhHHHHHHHHHhccC-----ceEEEEEecCCcccccchhhhhCC
Q 013976          150 LPLVTIFTRENAPSVF-ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-----KLIFVYVQMDNEDVGKPVSEYFGI  222 (432)
Q Consensus       150 ~p~v~~l~~~~~~~~~-~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~-----~i~f~~vd~~~~~~~~~l~~~~~i  222 (432)
                      .+.+..++.+++...+ ..++++++.||++| ++|+.+.+.|.++++++.+     .+.|+.+|++...    +++  ++
T Consensus         6 ~~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~~----~~~--~v   79 (121)
T 2djj_A            6 EGPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAND----VPD--EI   79 (121)
T ss_dssp             SCSSEECCTTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSC----CSS--CC
T ss_pred             CCCeEEecccCHHHHhhcCCCCEEEEEECCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECcccc----ccc--cc
Confidence            3457889999998874 66778899999999 9999999999999999987     7999999998742    454  88


Q ss_pred             CCCCCcEEEEEeCCCCc-eecCCCCCCHHHHHHHHHHHhcC
Q 013976          223 TGEAPKVLAYTGNDDAK-KHILDGELTLDKIKTFGEDFLEG  262 (432)
Q Consensus       223 ~~~~~P~i~i~~~~~~~-~y~~~~~~~~~~i~~fi~~~~~g  262 (432)
                      ...  |+++++..++.. ...+.|..+.+.|.+|+.+.++.
T Consensus        80 ~~~--Pt~~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~~  118 (121)
T 2djj_A           80 QGF--PTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAENGKY  118 (121)
T ss_dssp             SSS--SEEEEECSSCTTSCCCCCCCSCHHHHHHHHHHTSSS
T ss_pred             CcC--CeEEEEeCcCCCCceEecCCCCHHHHHHHHHhccCc
Confidence            887  999999766432 56788999999999999997753

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=99.11  E-value=1.7e-10  Score=95.05  Aligned_cols=105  Identities=12%  Similarity=0.109  Sum_probs=89.9

Q ss_pred             ceeecCCCchhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEE
Q 013976          152 LVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVL  230 (432)
Q Consensus       152 ~v~~l~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i  230 (432)
                      .+.+++.+++......++++++.||++| +.|+.+.+.|++++.++.+++.|+.+|++.   ++.+++.|||...  |++
T Consensus        48 ~~~~l~~~~f~~~~~~~~~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~---~~~l~~~~~i~~~--Pt~  122 (155)
T 2ppt_A           48 KVAGIDPAILARAERDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQA---HPAVAGRHRIQGI--PAF  122 (155)
T ss_dssp             SEEECCHHHHHHHTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTT---STHHHHHTTCCSS--SEE
T ss_pred             CCccCCHHHHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHccCCEEEEEEeCCc---cHHHHHHcCCCcC--CEE
Confidence            3677888888887777778899999999 999999999999999999889999999998   5689999999988  999


Q ss_pred             EEEeCCCCceecCCCCCCHHHHHHHHHHHhcC
Q 013976          231 AYTGNDDAKKHILDGELTLDKIKTFGEDFLEG  262 (432)
Q Consensus       231 ~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g  262 (432)
                      +++.++ .....+.|..+.+.|.+|++++++.
T Consensus       123 ~~~~~G-~~~~~~~G~~~~~~l~~~l~~~l~~  153 (155)
T 2ppt_A          123 ILFHKG-RELARAAGARPASELVGFVRGKLGA  153 (155)
T ss_dssp             EEEETT-EEEEEEESCCCHHHHHHHHHHHHC-
T ss_pred             EEEeCC-eEEEEecCCCCHHHHHHHHHHHhcc
Confidence            988543 3345577889999999999998763

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=99.11  E-value=3.2e-10  Score=88.84  Aligned_cols=105  Identities=14%  Similarity=0.220  Sum_probs=90.4

Q ss_pred             ceeecCCCchhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhcc---CceEEEEEecCCcccccchhhhhCCCCCCC
Q 013976          152 LVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFK---GKLIFVYVQMDNEDVGKPVSEYFGITGEAP  227 (432)
Q Consensus       152 ~v~~l~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~---~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~  227 (432)
                      .+..++.+++......+++++++||++| +.|+.+.+.+.+++..+.   ..+.|+.+|+..   .+.+++.|++.+.  
T Consensus         8 ~v~~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~---~~~~~~~~~v~~~--   82 (120)
T 1mek_A            8 HVLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATE---ESDLAQQYGVRGY--   82 (120)
T ss_dssp             TEEECCTTTHHHHHHHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTT---CCSSHHHHTCCSS--
T ss_pred             CcEEechhhHHHHHccCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCC---CHHHHHHCCCCcc--
Confidence            4788999999988888888899999999 999999999999999997   369999999988   5589999999988  


Q ss_pred             cEEEEEeCCCC-ceecCCCCCCHHHHHHHHHHHhc
Q 013976          228 KVLAYTGNDDA-KKHILDGELTLDKIKTFGEDFLE  261 (432)
Q Consensus       228 P~i~i~~~~~~-~~y~~~~~~~~~~i~~fi~~~~~  261 (432)
                      |+++++.++.. ....+.|..+.+.|.+|+++.++
T Consensus        83 Pt~~~~~~g~~~~~~~~~g~~~~~~l~~~l~~~~~  117 (120)
T 1mek_A           83 PTIKFFRNGDTASPKEYTAGREADDIVNWLKKRTG  117 (120)
T ss_dssp             SEEEEEESSCSSSCEECCCCSSHHHHHHHHHTTSC
T ss_pred             cEEEEEeCCCcCCcccccCccCHHHHHHHHHhccC
Confidence            99998865532 12677899999999999998765

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.10  E-value=3.8e-10  Score=89.43  Aligned_cols=108  Identities=18%  Similarity=0.131  Sum_probs=91.3

Q ss_pred             CCceeecCCCchhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccC-ceEEEEEecCCcccccchhhhhCCCCCCC
Q 013976          150 LPLVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNEDVGKPVSEYFGITGEAP  227 (432)
Q Consensus       150 ~p~v~~l~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~-~i~f~~vd~~~~~~~~~l~~~~~i~~~~~  227 (432)
                      ...+..++.+++..++..  ++++.||++| +.|+.+.+.+.++++.+.+ .+.|+.+|++.   +..+++.|++...  
T Consensus         6 ~~~v~~l~~~~f~~~~~~--~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~v~~~~vd~~~---~~~~~~~~~v~~~--   78 (126)
T 1x5e_A            6 SGNVRVITDENWRELLEG--DWMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTE---QPGLSGRFIINAL--   78 (126)
T ss_dssp             CCSEEECCTTTHHHHTSS--EEEEEEECSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEETTT---CHHHHHHTTCCSS--
T ss_pred             CCccEEecHHHHHHHhCC--CEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECcC---CHHHHHHcCCccc--
Confidence            345888999999987654  4788899999 9999999999999999986 79999999987   5689999999988  


Q ss_pred             cEEEEEeCCCCceecCCCCCCHHHHHHHHHHHhcCCcCc
Q 013976          228 KVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLKP  266 (432)
Q Consensus       228 P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g~l~~  266 (432)
                      |+++++.++  +...+.|..+.+.|.+|+++.+...+.+
T Consensus        79 Pt~~~~~~G--~~~~~~G~~~~~~l~~~l~~~~~~~~~~  115 (126)
T 1x5e_A           79 PTIYHCKDG--EFRRYQGPRTKKDFINFISDKEWKSIEP  115 (126)
T ss_dssp             SEEEEEETT--EEEECCSCCCHHHHHHHHHTCGGGGSCE
T ss_pred             CEEEEEeCC--eEEEeecCCCHHHHHHHHHHHhhccCCC
Confidence            999988544  3567889999999999999988655544

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.10  E-value=4e-10  Score=90.23  Aligned_cols=109  Identities=11%  Similarity=0.252  Sum_probs=90.7

Q ss_pred             CCceeecCCCchhhhcc-CCCcceEEEEEeC-cchhhhHHHHHHHHHhcc--CceEEEEEecCCcccccchhhhhCCCCC
Q 013976          150 LPLVTIFTRENAPSVFE-SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFK--GKLIFVYVQMDNEDVGKPVSEYFGITGE  225 (432)
Q Consensus       150 ~p~v~~l~~~~~~~~~~-~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~--~~i~f~~vd~~~~~~~~~l~~~~~i~~~  225 (432)
                      .+.+..++.+++...+. .++++++.||++| +.|+.+.+.|.+++.++.  +.+.|+.+|++.   +..+++.|++...
T Consensus         6 ~~~v~~l~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~~~---~~~~~~~~~v~~~   82 (133)
T 2dj3_A            6 SGPVKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATA---NDITNDQYKVEGF   82 (133)
T ss_dssp             SCSSEECCTTTCCCCCTCTTSEEEEEECCTTCSHHHHHHHHHHHHHHHHTTSSSEEEEEECTTT---SCCCCSSCCCSSS
T ss_pred             CCceEEEcCCCHHHHhccCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCEEEEEecCCc---CHHHHhhcCCCcC
Confidence            45688899999988765 4677888899999 999999999999999998  569999999987   4577888999988


Q ss_pred             CCcEEEEEeCCCC-ceecCC-CCCCHHHHHHHHHHHhcCC
Q 013976          226 APKVLAYTGNDDA-KKHILD-GELTLDKIKTFGEDFLEGK  263 (432)
Q Consensus       226 ~~P~i~i~~~~~~-~~y~~~-~~~~~~~i~~fi~~~~~g~  263 (432)
                        |+++++..+.. ....+. |..+.+.|.+|+...+...
T Consensus        83 --Pt~~~~~~g~~~~~~~~~gg~~~~~~l~~~l~~~~~~~  120 (133)
T 2dj3_A           83 --PTIYFAPSGDKKNPIKFEGGNRDLEHLSKFIDEHATKR  120 (133)
T ss_dssp             --SEEEEECTTCTTSCEECCSSCCSTTHHHHHHHHHSSSC
T ss_pred             --CEEEEEeCCCcccceEecCCCcCHHHHHHHHHHhcccc
Confidence              99999876543 233566 5689999999999998654

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A

Probab=99.10  E-value=5.8e-11  Score=98.71  Aligned_cols=65  Identities=18%  Similarity=0.247  Sum_probs=55.7

Q ss_pred             CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCC---CCCCceEEEEeCCCc
Q 013976          296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAK---SDGFPTILFFPAGNK  363 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~---i~~~P~i~~~~~g~~  363 (432)
                      .+++++|.|||+||++|+.+.|.+.+++..+.   ++.|..+|.+.+..  ..+.   +.++||+++|.+|..
T Consensus        53 ~~k~vvv~F~A~WC~pC~~~~P~l~~l~~~~~---~v~~~~v~~d~~~~~~~~~~~~~v~~iPt~i~~~~~G~  122 (167)
T 1z6n_A           53 ERRYRLLVAGEMWCPDCQINLAALDFAQRLQP---NIELAIISKGRAEDDLRQRLALERIAIPLVLVLDEEFN  122 (167)
T ss_dssp             CSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT---TEEEEEECHHHHHHHTTTTTTCSSCCSSEEEEECTTCC
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHCC---CcEEEEEECCCCHHHHHHHHHcCCCCcCeEEEECCCCC
Confidence            45789999999999999999999999998774   59999999887765  4565   999999999988643

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=99.10  E-value=2.2e-10  Score=89.85  Aligned_cols=104  Identities=13%  Similarity=0.144  Sum_probs=88.0

Q ss_pred             CceeecCCCchhhh-ccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCc
Q 013976          151 PLVTIFTRENAPSV-FESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPK  228 (432)
Q Consensus       151 p~v~~l~~~~~~~~-~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P  228 (432)
                      +.+..++.++|... ...+++.++.||++| +.|+.+.+.+.+++.++.+++.|+.+|++.   +..+++.|++.+.  |
T Consensus        13 ~~~~~~~~~~f~~~v~~~~k~vlv~f~a~~C~~C~~~~~~l~~~~~~~~~~v~~~~vd~d~---~~~l~~~~~v~~~--P   87 (119)
T 1w4v_A           13 TTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDD---HTDLAIEYEVSAV--P   87 (119)
T ss_dssp             SEEECCSHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEETTT---THHHHHHTTCCSS--S
T ss_pred             eEEEecChhhHHHHHHcCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCC---CHHHHHHcCCCcc--c
Confidence            46788888888774 456777888899999 999999999999999998889999999987   5689999999988  9


Q ss_pred             EEEEEeCCCCceecCCCCCCHHHHHHHHHHHh
Q 013976          229 VLAYTGNDDAKKHILDGELTLDKIKTFGEDFL  260 (432)
Q Consensus       229 ~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~  260 (432)
                      +++++.++ .....+.|..+.+.|.+|+++++
T Consensus        88 t~~~~~~G-~~~~~~~G~~~~~~l~~~l~~~l  118 (119)
T 1w4v_A           88 TVLAMKNG-DVVDKFVGIKDEDQLEAFLKKLI  118 (119)
T ss_dssp             EEEEEETT-EEEEEEESCCCHHHHHHHHHHHH
T ss_pred             EEEEEeCC-cEEEEEcCCCCHHHHHHHHHHHh
Confidence            99888433 34456778889999999999875

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=99.10  E-value=2.4e-10  Score=92.75  Aligned_cols=85  Identities=13%  Similarity=0.261  Sum_probs=72.0

Q ss_pred             CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCC-------------------------ccc--ccCC
Q 013976          296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT-------------------------NEH--HRAK  348 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~-------------------------~~~--~~~~  348 (432)
                      .++++||.||++||++|+.+.+.+.+++..+... ++.++.|+++.                         +..  ..++
T Consensus        33 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~-~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  111 (145)
T 3erw_A           33 KGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSD-SVKLVTVNLVNSEQNQQVVEDFIKANKLTFPIVLDSKGELMKEYH  111 (145)
T ss_dssp             TTSEEEEEEECSSCHHHHHHHHHHHHHHHHCCCS-SEEEEEEECGGGSSCHHHHHHHHHHTTCCSCEEECSSSHHHHHTT
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcCCC-CEEEEEEEccCCcCCHHHHHHHHHHcCCceeEEEcCchhHHHhcC
Confidence            5689999999999999999999999999999843 69999999864                         111  5789


Q ss_pred             CCCCceEEEE-eCCCcccCceeccCCCCHHHHHHHHH
Q 013976          349 SDGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLK  384 (432)
Q Consensus       349 i~~~P~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~  384 (432)
                      +.++|+++++ ++|..+.   .+.|..+.+.|.++|+
T Consensus       112 v~~~P~~~lid~~G~i~~---~~~g~~~~~~l~~~l~  145 (145)
T 3erw_A          112 IITIPTSFLLNEKGEIEK---TKIGPMTAEQLKEWTE  145 (145)
T ss_dssp             CCEESEEEEECTTCCEEE---EEESCCCHHHHHHHHC
T ss_pred             cCccCeEEEEcCCCcEEE---EEcCCcCHHHHHHhhC
Confidence            9999999999 6776554   7889999999998873

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=99.09  E-value=6.9e-10  Score=110.08  Aligned_cols=176  Identities=14%  Similarity=0.107  Sum_probs=123.5

Q ss_pred             cceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCceecCCCCCC
Q 013976          170 KNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELT  248 (432)
Q Consensus       170 ~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~~~  248 (432)
                      ++.+.+|.+. +.|+++...++++|.. .+++.+...|  .   . .         ...|++.+...+......|-|-..
T Consensus        20 ~v~l~~~~~~~~~~~~~~~~~~~~~~~-s~~i~~~~~~--~---~-~---------~~~p~~~~~~~~~~~~i~f~g~p~   83 (521)
T 1hyu_A           20 PVELIATLDDSAKSAEIKELLAEIAEL-SDKVTFKEDN--T---L-P---------VRKPSFLITNPGSQQGPRFAGSPL   83 (521)
T ss_dssp             CEEEEEECCSSHHHHHHHHHHHHHHTT-CTTEEEEECT--T---S-S---------SCSSEEEEECTTCCCSCEEESCCC
T ss_pred             CEEEEEEeCCCcchHHHHHHHHHHHHh-CCceEEEEcC--C---c-c---------cCCCEEEEecCCCcceEEEeccCc
Confidence            5556666665 5677888888887655 4567764321  1   0 0         234999888655434455667666


Q ss_pred             HHHHHHHHHHHhcCCcCccccCCCCCCCCCCceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcC
Q 013976          249 LDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRG  328 (432)
Q Consensus       249 ~~~i~~fi~~~~~g~l~~~~~se~~p~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~  328 (432)
                      -.++..|+..+++-.-.               -..++.+.++....-.....++.||++||++|+.+.|.+++++..+. 
T Consensus        84 g~e~~s~~~~l~~~~~~---------------~~~~~~~~~~~i~~~~~~~~i~~f~a~~C~~C~~~~~~l~~~a~~~~-  147 (521)
T 1hyu_A           84 GHEFTSLVLALLWTGGH---------------PSKEAQSLLEQIRDIDGDFEFETYYSLSCHNCPDVVQALNLMAVLNP-  147 (521)
T ss_dssp             GGGHHHHHHHHHHHTTC---------------CCCSCHHHHHHHHHCCSCEEEEEEECTTCSSHHHHHHHHHHHHHHCT-
T ss_pred             chhHHHHHHHHHhhcCC---------------CCCCCHHHHHHHHhcCCCcceEEEECCCCcCcHHHHHHHHHHHhHcC-
Confidence            66777777776541111               12244455555432234667999999999999999999999998875 


Q ss_pred             CCCEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCcccCceeccCCCCHHHHHHHHHhc
Q 013976          329 VDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKN  386 (432)
Q Consensus       329 ~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~  386 (432)
                        ++.+..+|.+.+..  .+++|.++|++++  +|+.+     ..|..+.+.|.+|+...
T Consensus       148 --~v~~~~vd~~~~~~~~~~~~i~svPt~~i--~g~~~-----~~G~~~~~~l~~~l~~~  198 (521)
T 1hyu_A          148 --RIKHTAIDGGTFQNEITERNVMGVPAVFV--NGKEF-----GQGRMTLTEIVAKVDTG  198 (521)
T ss_dssp             --TEEEEEEETTTCHHHHHHTTCCSSSEEEE--TTEEE-----EESCCCHHHHHHHHCCS
T ss_pred             --ceEEEEEechhhHHHHHHhCCCccCEEEE--CCEEE-----ecCCCCHHHHHHHHhhc
Confidence              59999999998877  6899999999977  66543     44889999999998765

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=99.09  E-value=3.8e-10  Score=90.80  Aligned_cols=106  Identities=17%  Similarity=0.276  Sum_probs=86.6

Q ss_pred             ceeecCCCchhhhcc------------CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhh
Q 013976          152 LVTIFTRENAPSVFE------------SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSE  218 (432)
Q Consensus       152 ~v~~l~~~~~~~~~~------------~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~  218 (432)
                      .+..++.++|...+.            .++++++.||++| +.|+.+.+.+.+++.++.+++.|+.+|++.   +..+++
T Consensus        10 ~v~~l~~~~f~~~v~~~~~~~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~---~~~l~~   86 (136)
T 2l5l_A           10 KVIHLTKAEFLAKVYNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEK---EQELAG   86 (136)
T ss_dssp             SEEEECHHHHHHHTBCTTTCSSSCCBCCSSCEEEEEECTTSHHHHHHHHHHHHHHHHTTTTCEEEEEETTT---CHHHHH
T ss_pred             ceEEecchHHHHHHHhhccCccceeecCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCCEEEEEEeCCC---CHHHHH
Confidence            355666666665443            4567888999999 999999999999999999889999999998   568999


Q ss_pred             hhCCCCCCCcEEEEEeCCCCceecCCCCCCHHHHHHHHHHHhcCC
Q 013976          219 YFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGK  263 (432)
Q Consensus       219 ~~~i~~~~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g~  263 (432)
                      .|++...  |++++++.++ +...+.|..+.+.|.+|+++.+...
T Consensus        87 ~~~v~~~--Pt~~~~~~~G-~~~~~~G~~~~~~l~~~l~~~~~~~  128 (136)
T 2l5l_A           87 AFGIRSI--PSILFIPMEG-KPEMAQGAMPKASFKKAIDEFLLKK  128 (136)
T ss_dssp             HTTCCSS--CEEEEECSSS-CCEEEESCCCHHHHHHHHHHHHTSC
T ss_pred             HcCCCCC--CEEEEECCCC-cEEEEeCCCCHHHHHHHHHHHhhcc
Confidence            9999988  9999985443 2335678899999999999987643

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.09  E-value=6.8e-10  Score=94.46  Aligned_cols=138  Identities=15%  Similarity=0.231  Sum_probs=94.8

Q ss_pred             CHHHHHHHHHHHhcCCcCccccCCCCCCCCCCceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhc
Q 013976          248 TLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLR  327 (432)
Q Consensus       248 ~~~~i~~fi~~~~~g~l~~~~~se~~p~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~  327 (432)
                      ...++.+|+..+..|.+...........-.+-.+..++++.+.-.- -.++++||.||++||++|....+.+.++...++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~p~f~l~~~~G~~~~l~~-~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~   90 (186)
T 1jfu_A           12 AAVATAQKIAPLAHGEVAALTMASAPLKLPDLAFEDADGKPKKLSD-FRGKTLLVNLWATWCVPCRKEMPALDELQGKLS   90 (186)
T ss_dssp             HHHHHHHHHGGGCCGGGTTCEECCSCCBCCCCEEECTTSCEEEGGG-GTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHhhhcchhhcchhhhhccccCCCcCCCcEeEcCCCCEeeHHH-cCCCEEEEEEEeCCCHhHHHHHHHHHHHHHHhc
Confidence            3457889999999998876655332221112223333343332211 146899999999999999999999999999998


Q ss_pred             CCCCEEEEEEeCCCccc-------ccCCCC-----------------------CCceEEEE-eCCCcccCceeccCCC--
Q 013976          328 GVDSIVIAKMDGTTNEH-------HRAKSD-----------------------GFPTILFF-PAGNKSFDPINVDVDR--  374 (432)
Q Consensus       328 ~~~~~~~~~id~~~~~~-------~~~~i~-----------------------~~P~i~~~-~~g~~~~~~~~y~g~~--  374 (432)
                      +. ++.++.|+++..+.       .++++.                       ++|+++++ ++|+.+.   .+.|..  
T Consensus        91 ~~-~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~P~~~lid~~G~i~~---~~~g~~~~  166 (186)
T 1jfu_A           91 GP-NFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEIA---TIAGPAEW  166 (186)
T ss_dssp             BT-TEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHHHHTTTCCSSSSEEEEECTTSBEEE---EEESCCCT
T ss_pred             cC-CcEEEEEECCCCCHHHHHHHHHHcCCCCCceEECCcchHHHHhccccccCCCCEEEEECCCCCEEE---EEecCCcc
Confidence            42 79999999886521       234443                       89999999 6666543   567755  


Q ss_pred             CHHHHHHHHHhcCCCC
Q 013976          375 TVVALYKFLKKNASIP  390 (432)
Q Consensus       375 ~~~~l~~fi~~~~~~~  390 (432)
                      +.+.|.++|++.+..+
T Consensus       167 ~~~~l~~~l~~ll~~~  182 (186)
T 1jfu_A          167 ASEDALKLIRAATGKA  182 (186)
T ss_dssp             TSHHHHHHHHHHHC--
T ss_pred             CHHHHHHHHHHHhccc
Confidence            4789999999887643

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=99.09  E-value=2e-10  Score=89.65  Aligned_cols=102  Identities=13%  Similarity=0.213  Sum_probs=85.8

Q ss_pred             CceeecCCCchhhhcc--CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCC
Q 013976          151 PLVTIFTRENAPSVFE--SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAP  227 (432)
Q Consensus       151 p~v~~l~~~~~~~~~~--~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~  227 (432)
                      +.....+.++|...+.  .++++++.||++| +.|+.+.+.+.++++++.+ +.|+.+|++.   ++.+++.||+.+.  
T Consensus        12 ~~~~~~t~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-v~~~~vd~d~---~~~l~~~~~v~~~--   85 (116)
T 3qfa_C           12 SVKQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSN-VIFLEVDVDD---CQDVASECEVKSM--   85 (116)
T ss_dssp             CCBCCCCHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHHHHHHTTCTT-SEEEEEETTT---THHHHHHTTCCSS--
T ss_pred             cccCCCCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-CEEEEEECCC---CHHHHHHcCCccc--
Confidence            4566677788888776  6778889999999 9999999999999999988 9999999998   5689999999998  


Q ss_pred             cEEEEEeCCCCceecCCCCCCHHHHHHHHHHHh
Q 013976          228 KVLAYTGNDDAKKHILDGELTLDKIKTFGEDFL  260 (432)
Q Consensus       228 P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~  260 (432)
                      |+++++.++ .....+.|. +.+.|.+|+++++
T Consensus        86 Pt~~~~~~G-~~~~~~~G~-~~~~l~~~l~~~l  116 (116)
T 3qfa_C           86 PTFQFFKKG-QKVGEFSGA-NKEKLEATINELV  116 (116)
T ss_dssp             SEEEEESSS-SEEEEEESC-CHHHHHHHHHHHC
T ss_pred             cEEEEEeCC-eEEEEEcCC-CHHHHHHHHHHhC
Confidence            999888443 344456787 9999999998763

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=99.09  E-value=1.9e-10  Score=95.68  Aligned_cols=105  Identities=12%  Similarity=0.184  Sum_probs=80.7

Q ss_pred             ceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCC------------------
Q 013976          280 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT------------------  341 (432)
Q Consensus       280 ~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~------------------  341 (432)
                      .+..++++.+.... ..++++||.||++||++|+.+.|.|.+++..++.. ++.++.|+++.                  
T Consensus        22 ~l~~~~g~~~~~~~-~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~-~~~vv~v~~~~~~~~~~~~~~~~~~~~~~   99 (164)
T 2h30_A           22 TMKTADNRPASVYL-KKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFS-SANLITVASPGFLHEKKDGEFQKWYAGLN   99 (164)
T ss_dssp             TCEETTSSBGGGGC-CTTSCEEEEECCTTCHHHHHHHHHHHHHHTCGGGT-TSEEEEEECTTSTTCCCTTHHHHHHTTSC
T ss_pred             ccCCCCCCEeeHHH-hCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccC-CcEEEEEEcCCCccccCHHHHHHHHHhCC
Confidence            45666777666533 34689999999999999999999999999988653 56666666431                  


Q ss_pred             ----------ccc--ccCCCCCCceEEEE-eCCCcccCceeccCCCCHHHHHHHHHhcCCC
Q 013976          342 ----------NEH--HRAKSDGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNASI  389 (432)
Q Consensus       342 ----------~~~--~~~~i~~~P~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~  389 (432)
                                +..  ..+++.++|+++++ ++|..+.   .+.|..+.+.|.++|++....
T Consensus       100 ~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~---~~~g~~~~~~l~~~i~~~~~~  157 (164)
T 2h30_A          100 YPKLPVVTDNGGTIAQNLNISVYPSWALIGKDGDVQR---IVKGSINEAQALALIRNPNAD  157 (164)
T ss_dssp             CTTSCEEECTTCHHHHHTTCCSSSEEEEECTTSCEEE---EEESCCCHHHHHHHHHCTTCC
T ss_pred             CCcceEEEcCchHHHHHcCCCccceEEEECCCCcEEE---EEcCCCCHHHHHHHHHHHHHH
Confidence                      111  35799999999999 6776653   678989999999999988764

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=99.09  E-value=6.5e-10  Score=88.08  Aligned_cols=106  Identities=8%  Similarity=0.067  Sum_probs=87.6

Q ss_pred             ceeecCCCchh-----hhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEe--cCCcccccchhhhhCCC
Q 013976          152 LVTIFTRENAP-----SVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQ--MDNEDVGKPVSEYFGIT  223 (432)
Q Consensus       152 ~v~~l~~~~~~-----~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd--~~~~~~~~~l~~~~~i~  223 (432)
                      .+..++..++.     .....++++++.||++| +.|+.+.+.+.++++++.+.+.|+.+|  ++.   +..+++.||+.
T Consensus         5 ~~~~l~~~~~~~~~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~d~---~~~~~~~~~v~   81 (126)
T 2l57_A            5 GIKQINFQSINVVENLEEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREGKFNIYYARLEEEK---NIDLAYKYDAN   81 (126)
T ss_dssp             CSSCTTTTCCSEESSTTTCCSSSCEEEEEECSSCHHHHHHHHHHHHHHHHSSSSCEEEEEETTSSH---HHHHHHHTTCC
T ss_pred             ccCCCCccccchhHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc---hHHHHHHcCCc
Confidence            34556666666     45566778889999999 999999999999999998889999999  766   56889999999


Q ss_pred             CCCCcEEEEEeCCCCceecCCCCCCHHHHHHHHHHHhcC
Q 013976          224 GEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEG  262 (432)
Q Consensus       224 ~~~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g  262 (432)
                      +.  |++++++.++.....+.|..+.+.|.+|+++.+..
T Consensus        82 ~~--Pt~~~~~~~G~~~~~~~G~~~~~~l~~~l~~~~~~  118 (126)
T 2l57_A           82 IV--PTTVFLDKEGNKFYVHQGLMRKNNIETILNSLGVK  118 (126)
T ss_dssp             SS--SEEEEECTTCCEEEEEESCCCHHHHHHHHHHHCCC
T ss_pred             ce--eEEEEECCCCCEEEEecCCCCHHHHHHHHHHHhcc
Confidence            88  99999975544555678889999999999998753

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=99.08  E-value=3.4e-10  Score=91.60  Aligned_cols=106  Identities=18%  Similarity=0.214  Sum_probs=77.1

Q ss_pred             CceeecCCCchhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcE
Q 013976          151 PLVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKV  229 (432)
Q Consensus       151 p~v~~l~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~  229 (432)
                      +.+.+++.+++......+..+++.||++| +.|+.+.+.+.+++.++.+++.|+.+|++.   +..+++.|++...  |+
T Consensus        33 ~~v~~l~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~---~~~l~~~~~v~~~--Pt  107 (140)
T 1v98_A           33 PWVVEADEKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDE---HPGLAARYGVRSV--PT  107 (140)
T ss_dssp             ----------------CCCEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTT---CHHHHHHTTCCSS--SE
T ss_pred             CccccCCHHHHHHHHHcCCCEEEEEECCCCHHHHHHHHHHHHHHHHccCceEEEEEECCC---CHHHHHHCCCCcc--CE
Confidence            45677888888877655545788899999 999999999999999999889999999998   5689999999988  99


Q ss_pred             EEEEeCCCCceecCCCCCCHHHHHHHHHHHhcC
Q 013976          230 LAYTGNDDAKKHILDGELTLDKIKTFGEDFLEG  262 (432)
Q Consensus       230 i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g  262 (432)
                      ++++.++. ....+.|..+.+.|.+|+++++.|
T Consensus       108 ~~~~~~G~-~~~~~~G~~~~~~l~~~i~~~l~~  139 (140)
T 1v98_A          108 LVLFRRGA-PVATWVGASPRRVLEERLRPYLEG  139 (140)
T ss_dssp             EEEEETTE-EEEEEESCCCHHHHHHHHHHHHTC
T ss_pred             EEEEeCCc-EEEEEeCCCCHHHHHHHHHHHHcc
Confidence            98885432 345577889999999999998875

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=99.08  E-value=1.8e-10  Score=90.92  Aligned_cols=103  Identities=19%  Similarity=0.284  Sum_probs=81.1

Q ss_pred             ceeecCCCchhh-hccCCCcceEEEEEeC-c--------------chhhhHHHHHHHHHhccCceEEEEEecCCcccccc
Q 013976          152 LVTIFTRENAPS-VFESPIKNQLLLFAVS-N--------------DSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKP  215 (432)
Q Consensus       152 ~v~~l~~~~~~~-~~~~~~~~~i~~~~~~-~--------------~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~  215 (432)
                      .+.+++.+++.. +...++++++.||++| +              +|+.+.+.+.+++.++.+++.|+.+|++.   ++.
T Consensus         4 ~v~~l~~~~f~~~~~~~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~~~~~~~vd~d~---~~~   80 (123)
T 1oaz_A            4 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGKLTVAKLNIDQ---NPG   80 (123)
T ss_dssp             SCEECCSTTHHHHTTSCSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC-------CEEEEEETTS---CTT
T ss_pred             ccEecChhhHHHHHHhCCCeEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhcCCeEEEEEECCC---CHH
Confidence            467889999975 4567778889999999 9              99999999999999999889999999998   568


Q ss_pred             hhhhhCCCCCCCcEEEEEeCCCCceecCCCCCCHHHHHHHHHHHh
Q 013976          216 VSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFL  260 (432)
Q Consensus       216 l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~  260 (432)
                      +++.||+.+.  |+++++.++ .....+.|..+.+.+.+|++..+
T Consensus        81 l~~~~~v~~~--Pt~~~~~~G-~~~~~~~G~~~~~~l~~~l~~~l  122 (123)
T 1oaz_A           81 TAPKYGIRGI--PTLLLFKNG-EVAATKVGALSKGQLKEFLDANL  122 (123)
T ss_dssp             TGGGGTCCBS--SEEEEEESS-SEEEEEESCCCHHHHHHHHTTTC
T ss_pred             HHHHcCCCcc--CEEEEEECC-EEEEEEeCCCCHHHHHHHHHHHh
Confidence            9999999998  999988443 34455788899999999998754

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=99.08  E-value=3.8e-10  Score=86.54  Aligned_cols=102  Identities=21%  Similarity=0.246  Sum_probs=85.5

Q ss_pred             eeecCCCchhhhc-cCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEE
Q 013976          153 VTIFTRENAPSVF-ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVL  230 (432)
Q Consensus       153 v~~l~~~~~~~~~-~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i  230 (432)
                      +..++.+++.... ..++++++.||++| +.|+.+.+.+.+++.++.+++.|+.+|++.   ++.+++.||+.+.  |++
T Consensus         3 v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~v~~~--Pt~   77 (107)
T 1dby_A            3 AGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDE---SPNVASEYGIRSI--PTI   77 (107)
T ss_dssp             CEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTT---CHHHHHHHTCCSS--CEE
T ss_pred             cEeccHHHHHHHHhcCCCcEEEEEECCCCHhHHHHHHHHHHHHHHhCCceEEEEEECCC---CHHHHHHCCCCcC--CEE
Confidence            4567888887744 56677788899999 999999999999999999889999999987   5689999999988  999


Q ss_pred             EEEeCCCCceecCCCCCCHHHHHHHHHHHh
Q 013976          231 AYTGNDDAKKHILDGELTLDKIKTFGEDFL  260 (432)
Q Consensus       231 ~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~  260 (432)
                      +++.++ .....+.|..+.+.+.+++++++
T Consensus        78 ~~~~~G-~~~~~~~G~~~~~~l~~~l~~~l  106 (107)
T 1dby_A           78 MVFKGG-KKCETIIGAVPKATIVQTVEKYL  106 (107)
T ss_dssp             EEESSS-SEEEEEESCCCHHHHHHHHHHHC
T ss_pred             EEEeCC-EEEEEEeCCCCHHHHHHHHHHHh
Confidence            888433 34456778899999999999875

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=99.07  E-value=6e-10  Score=86.20  Aligned_cols=104  Identities=15%  Similarity=0.199  Sum_probs=87.8

Q ss_pred             ceeecCCCchhh-hccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcE
Q 013976          152 LVTIFTRENAPS-VFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKV  229 (432)
Q Consensus       152 ~v~~l~~~~~~~-~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~  229 (432)
                      .+..++.+++.. +...++++++.||++| +.|+.+.+.+.+++.++.+++.|+.+|++.   ++.+++.||+.+.  |+
T Consensus         6 ~v~~l~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~v~~~--Pt   80 (112)
T 1t00_A            6 TLKHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDE---NPGTAAKYGVMSI--PT   80 (112)
T ss_dssp             CCEEECTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTT---CHHHHHHTTCCSS--SE
T ss_pred             eEEecchhhHHHHHhhCCCeEEEEEECCCCHhHHhcCHHHHHHHHHhcCCeEEEEEEcCC---CHHHHHhCCCCcc--cE
Confidence            467889999865 4456777888899999 999999999999999998889999999988   5689999999988  99


Q ss_pred             EEEEeCCCCceecCCCCCCHHHHHHHHHHHhc
Q 013976          230 LAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  261 (432)
Q Consensus       230 i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  261 (432)
                      ++++.++ .....+.|..+.+.+.+|++++++
T Consensus        81 ~~~~~~G-~~~~~~~G~~~~~~l~~~l~~~l~  111 (112)
T 1t00_A           81 LNVYQGG-EVAKTIVGAKPKAAIVRDLEDFIA  111 (112)
T ss_dssp             EEEEETT-EEEEEEESCCCHHHHHHHTHHHHC
T ss_pred             EEEEeCC-EEEEEEeCCCCHHHHHHHHHHHhh
Confidence            9888543 344567788999999999998764

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=99.07  E-value=3.9e-10  Score=86.27  Aligned_cols=97  Identities=8%  Similarity=0.054  Sum_probs=72.6

Q ss_pred             CCCchhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeC
Q 013976          157 TRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGN  235 (432)
Q Consensus       157 ~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~  235 (432)
                      +.+++...+..++++++.||++| ++|+.+.+.+.+++.++. ++.|+.+|++.   ++.+++.|++.+.  |+++++.+
T Consensus         7 ~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~-~~~~~~vd~~~---~~~l~~~~~v~~~--Pt~~~~~~   80 (105)
T 4euy_A            7 TIEELATYIEEQQLVLLFIKTENCGVCDVMLRKVNYVLENYN-YVEKIEILLQD---MQEIAGRYAVFTG--PTVLLFYN   80 (105)
T ss_dssp             ---CCSSSTTCSSEEEEEEEESSCHHHHHHHHHHHHHHHTCT-TEEEEEEEECC---C---------CCC--CEEEEEET
T ss_pred             CHHHHHHHHhcCCCEEEEEeCCCCcchHHHHHHHHHHHHHcC-CceEEEEECCC---CHHHHHhcCCCCC--CEEEEEeC
Confidence            45677777777888899999999 999999999999999995 59999999998   5689999999988  99998864


Q ss_pred             CCCceecCCCCCCHHHHHHHHHHHh
Q 013976          236 DDAKKHILDGELTLDKIKTFGEDFL  260 (432)
Q Consensus       236 ~~~~~y~~~~~~~~~~i~~fi~~~~  260 (432)
                      + .....+.|..+.+.|.+++++++
T Consensus        81 G-~~~~~~~g~~~~~~l~~~l~~~~  104 (105)
T 4euy_A           81 G-KEILRESRFISLENLERTIQLFE  104 (105)
T ss_dssp             T-EEEEEEESSCCHHHHHHHHHTTC
T ss_pred             C-eEEEEEeCCcCHHHHHHHHHHhh
Confidence            4 23455678899999999998764

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=99.06  E-value=7e-10  Score=89.82  Aligned_cols=87  Identities=17%  Similarity=0.364  Sum_probs=68.6

Q ss_pred             CCCcEEEEEeCCCChhhhhhHHHHHH---HHHHhcCCCCEEEEEEeCCCccc--------------------------cc
Q 013976          296 ESKDVLLEIYAPWCGHCQAFEPTYNK---LAKHLRGVDSIVIAKMDGTTNEH--------------------------HR  346 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~c~~~~~~~~~---la~~~~~~~~~~~~~id~~~~~~--------------------------~~  346 (432)
                      .++++||.||++||++|+...|.+.+   +...+++. ++.++.|+++.+..                          ..
T Consensus        26 ~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~-~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  104 (142)
T 3ewl_A           26 KAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENG-TLRVLAIYPDENREEWATKAVYMPQGWIVGWNKAGDIRTRQL  104 (142)
T ss_dssp             CCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHT-SEEEEEEECSSCHHHHHHHHTTSCTTCEEEECTTCHHHHTTC
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccC-CeEEEEEEecCCHHHHHHHHHHcCCCcceeeCCccchhhHHH
Confidence            46899999999999999999999998   88888753 69999998875432                          27


Q ss_pred             CCCCCCceEEEEeCCCcccCceeccCCCCHHHHHHHHHhcCC
Q 013976          347 AKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNAS  388 (432)
Q Consensus       347 ~~i~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  388 (432)
                      +++.++|+++++..+..+    .+ +..+.+.|.++|+++.+
T Consensus       105 ~~v~~~P~~~lid~~G~i----~~-~~~~~~~l~~~l~~~~~  141 (142)
T 3ewl_A          105 YDIRATPTIYLLDGRKRV----IL-KDTSMEQLIDYLATQAG  141 (142)
T ss_dssp             SCCCSSSEEEEECTTCBE----EE-CSCCHHHHHHHHHC---
T ss_pred             cCCCCCCeEEEECCCCCE----Ee-cCCCHHHHHHHHHHHcc
Confidence            899999999999443332    33 56889999999998754

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=99.06  E-value=4e-10  Score=88.51  Aligned_cols=106  Identities=14%  Similarity=0.102  Sum_probs=88.7

Q ss_pred             CCceeecCCCchhh-hccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCC
Q 013976          150 LPLVTIFTRENAPS-VFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAP  227 (432)
Q Consensus       150 ~p~v~~l~~~~~~~-~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~  227 (432)
                      ...+..++.+++.. +...+++++++||++| +.|+.+.+.+.+++.++.+++.|+.+|++.   ++.+++.|++...  
T Consensus        11 ~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~i~~~--   85 (121)
T 2i1u_A           11 KSATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDT---NPETARNFQVVSI--   85 (121)
T ss_dssp             -CCSEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTT---CHHHHHHTTCCSS--
T ss_pred             cccceecCHHHHHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCC---CHHHHHhcCCCcC--
Confidence            44578899999975 4466778888899999 999999999999999998889999999987   5689999999988  


Q ss_pred             cEEEEEeCCCCceecCCCCCCHHHHHHHHHHHhc
Q 013976          228 KVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  261 (432)
Q Consensus       228 P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  261 (432)
                      |+++++.++ .....+.|..+.+.|.+|++.+++
T Consensus        86 Pt~~~~~~g-~~~~~~~G~~~~~~l~~~l~~~l~  118 (121)
T 2i1u_A           86 PTLILFKDG-QPVKRIVGAKGKAALLRELSDVVP  118 (121)
T ss_dssp             SEEEEEETT-EEEEEEESCCCHHHHHHHTCSCCC
T ss_pred             CEEEEEECC-EEEEEecCCCCHHHHHHHHHHHHh
Confidence            999888643 234557888999999999988764

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=99.06  E-value=6.1e-10  Score=84.98  Aligned_cols=102  Identities=18%  Similarity=0.263  Sum_probs=85.1

Q ss_pred             eeecCCCchhhhc-cCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEE
Q 013976          153 VTIFTRENAPSVF-ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVL  230 (432)
Q Consensus       153 v~~l~~~~~~~~~-~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i  230 (432)
                      +..++.+++.... ..+++.+++||++| +.|+.+.+.+.+++.++.+++.|+.+|++.   ++.+++.|++.+.  |++
T Consensus         2 v~~~~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~v~~~--Pt~   76 (105)
T 1fb6_A            2 VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDE---APGIATQYNIRSI--PTV   76 (105)
T ss_dssp             CEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTT---CHHHHHHTTCCSS--SEE
T ss_pred             ceechhhhHHHHHhcCCCcEEEEEECCCChHHHHHHHHHHHHHHHhcCceEEEEEcCcc---hHHHHHhCCCCcc--cEE
Confidence            4578888988754 45667788899999 999999999999999999889999999987   5689999999988  999


Q ss_pred             EEEeCCCCceecCCCCCCHHHHHHHHHHHh
Q 013976          231 AYTGNDDAKKHILDGELTLDKIKTFGEDFL  260 (432)
Q Consensus       231 ~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~  260 (432)
                      +++.++ .....+.|..+.+.+.+++++++
T Consensus        77 ~~~~~g-~~~~~~~G~~~~~~l~~~l~~~l  105 (105)
T 1fb6_A           77 LFFKNG-ERKESIIGAVPKSTLTDSIEKYL  105 (105)
T ss_dssp             EEEETT-EEEEEEEECCCHHHHHHHHHHHC
T ss_pred             EEEeCC-eEEEEEecCCCHHHHHHHHHhhC
Confidence            888543 23445678899999999998763

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=99.05  E-value=2.2e-10  Score=90.25  Aligned_cols=104  Identities=18%  Similarity=0.109  Sum_probs=87.1

Q ss_pred             ceeecCCCchh-hhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcE
Q 013976          152 LVTIFTRENAP-SVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKV  229 (432)
Q Consensus       152 ~v~~l~~~~~~-~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~  229 (432)
                      .+..++.+++. .+...++++++.||++| +.|+.+.+.+.+++.++.+++.|+.+|++.   ++.+++.|++.+.  |+
T Consensus         4 ~v~~l~~~~f~~~~~~~~~~~lv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~---~~~~~~~~~v~~~--Pt   78 (122)
T 3aps_A            4 ASIDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQA---YPQTCQKAGIKAY--PS   78 (122)
T ss_dssp             CSEECCHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTT---CHHHHHHTTCCSS--SE
T ss_pred             chhcCCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCcC---CHHHHHHcCCCcc--ce
Confidence            36778888884 46677778889999999 999999999999999999889999999998   5689999999988  99


Q ss_pred             EEEEeCCCCceecCCCC----CCHHHHHHHHHHHhc
Q 013976          230 LAYTGNDDAKKHILDGE----LTLDKIKTFGEDFLE  261 (432)
Q Consensus       230 i~i~~~~~~~~y~~~~~----~~~~~i~~fi~~~~~  261 (432)
                      +++++.+.. ...+.|.    .+.+.|.+|++..+.
T Consensus        79 ~~~~~~~~~-~~~~~g~~~~~~~~~~l~~~l~~~l~  113 (122)
T 3aps_A           79 VKLYQYERA-KKSIWEEQINSRDAKTIAALIYGKLE  113 (122)
T ss_dssp             EEEEEEEGG-GTEEEEEEECCSCHHHHHHHHHHHHH
T ss_pred             EEEEeCCCc-cceeeccccCcCCHHHHHHHHHHHHH
Confidence            998865542 3334443    799999999999876

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=99.05  E-value=3.7e-10  Score=92.86  Aligned_cols=86  Identities=19%  Similarity=0.222  Sum_probs=71.8

Q ss_pred             CcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCC---------------------------Cccc--ccCC
Q 013976          298 KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT---------------------------TNEH--HRAK  348 (432)
Q Consensus       298 ~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~---------------------------~~~~--~~~~  348 (432)
                      +++||.||++||++|+.+.+.+.+++..+    ++.++.|+++                           .+..  ..++
T Consensus        31 k~vll~f~~~~C~~C~~~~~~l~~l~~~~----~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  106 (154)
T 3ia1_A           31 KPAVIVFWASWCTVCKAEFPGLHRVAEET----GVPFYVISREPRDTREVVLEYMKTYPRFIPLLASDRDRPHEVAARFK  106 (154)
T ss_dssp             SSEEEEEECTTCHHHHHHHHHHHHHHHHH----CCCEEEEECCTTCCHHHHHHHHTTCTTEEECBCCSSCCHHHHHTTSS
T ss_pred             CeEEEEEEcccChhHHHHHHHHHHHHHHc----CCeEEEEeCCCcccHHHHHHHHHHcCCCcccccccccchHHHHHHhC
Confidence            89999999999999999999999999999    3777778872                           1111  5789


Q ss_pred             CCCCceEEEE-eCCCcccCceeccCCCCHHHHHHHHHhcCCCC
Q 013976          349 SDGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNASIP  390 (432)
Q Consensus       349 i~~~P~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~  390 (432)
                      +.++|+++++ ++|+.+.   .+.|..+.+.|.++|+++.+..
T Consensus       107 v~~~P~~~lid~~G~i~~---~~~g~~~~~~l~~~l~~~~~~~  146 (154)
T 3ia1_A          107 VLGQPWTFVVDREGKVVA---LFAGRAGREALLDALLLAGADL  146 (154)
T ss_dssp             BCSSCEEEEECTTSEEEE---EEESBCCHHHHHHHHHHTTCCC
T ss_pred             CCcccEEEEECCCCCEEE---EEcCCCCHHHHHHHHHhccCcc
Confidence            9999999888 6676554   7888999999999999997654

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=99.05  E-value=9.9e-10  Score=96.32  Aligned_cols=109  Identities=19%  Similarity=0.285  Sum_probs=94.5

Q ss_pred             CCceeecCCCchhh-hccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCC
Q 013976          150 LPLVTIFTRENAPS-VFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAP  227 (432)
Q Consensus       150 ~p~v~~l~~~~~~~-~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~  227 (432)
                      .+.+..++.++|.. +...++++++.||++| +.|+.+.+.|.++++++.+++.|+.+|++.   ++.+++.|++.+.  
T Consensus        11 ~~~~~~lt~~~f~~~v~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~---~~~l~~~~~v~~~--   85 (222)
T 3dxb_A           11 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQ---NPGTAPKYGIRGI--   85 (222)
T ss_dssp             SCCCEECCTTTHHHHHTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTT---CTTTGGGGTCCSB--
T ss_pred             CCCceeCCHHHHHHHHHhcCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCCcEEEEEECCC---CHHHHHHcCCCcC--
Confidence            45688999999987 5677778899999999 999999999999999999999999999998   5689999999988  


Q ss_pred             cEEEEEeCCCCceecCCCCCCHHHHHHHHHHHhcCCc
Q 013976          228 KVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKL  264 (432)
Q Consensus       228 P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g~l  264 (432)
                      |+++++..+. ....+.|..+.+.|.+|++..+.+..
T Consensus        86 Pt~~~~~~G~-~~~~~~G~~~~~~l~~~l~~~l~~~~  121 (222)
T 3dxb_A           86 PTLLLFKNGE-VAATKVGALSKGQLKEFLDANLAGSA  121 (222)
T ss_dssp             SEEEEEETTE-EEEEEESCCCHHHHHHHHHHHSCCSC
T ss_pred             CEEEEEECCe-EEEEeccccChHHHHHHHHhhccccc
Confidence            9999886442 34466788999999999999987654

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=99.05  E-value=3.9e-10  Score=86.11  Aligned_cols=94  Identities=18%  Similarity=0.260  Sum_probs=76.2

Q ss_pred             CCchhhhcc--CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEe
Q 013976          158 RENAPSVFE--SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTG  234 (432)
Q Consensus       158 ~~~~~~~~~--~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~  234 (432)
                      .++|...+.  .++++++.||++| ++|+.+.+.+.+++..+.+ +.|+.+|+++   ++++++.|||++.  |+++++.
T Consensus         8 ~~~f~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~vd~d~---~~~l~~~~~V~~~--PT~~~~~   81 (105)
T 3zzx_A            8 QEDFTKQLNEAGNKLVVIDFYATWCGPCKMIAPKLEELSQSMSD-VVFLKVDVDE---CEDIAQDNQIACM--PTFLFMK   81 (105)
T ss_dssp             HHHHHHHHHHTTTSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT-EEEEEEETTT---CHHHHHHTTCCBS--SEEEEEE
T ss_pred             HHHHHHHHHhcCCCEEEEEEECCCCCCccCCCcchhhhhhccCC-eEEEEEeccc---CHHHHHHcCCCee--cEEEEEE
Confidence            356666553  2456677799999 9999999999999999876 8999999988   6799999999998  9999886


Q ss_pred             CCCCceecCCCCCCHHHHHHHHHHH
Q 013976          235 NDDAKKHILDGELTLDKIKTFGEDF  259 (432)
Q Consensus       235 ~~~~~~y~~~~~~~~~~i~~fi~~~  259 (432)
                      ++. ....+.| .+.+.|.+||+++
T Consensus        82 ~G~-~v~~~~G-~~~~~l~~~i~k~  104 (105)
T 3zzx_A           82 NGQ-KLDSLSG-ANYDKLLELVEKN  104 (105)
T ss_dssp             TTE-EEEEEES-CCHHHHHHHHHHH
T ss_pred             CCE-EEEEEeC-cCHHHHHHHHHhc
Confidence            543 3344567 6899999999874

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=99.04  E-value=5.9e-10  Score=88.09  Aligned_cols=103  Identities=14%  Similarity=0.133  Sum_probs=87.8

Q ss_pred             eeecCCCchhhhccCCC-cceEEEEEeC---cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCc
Q 013976          153 VTIFTRENAPSVFESPI-KNQLLLFAVS---NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPK  228 (432)
Q Consensus       153 v~~l~~~~~~~~~~~~~-~~~i~~~~~~---~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P  228 (432)
                      +..++.++|+..+.... ++++.|+++|   ++|+.+.+.+.++|.+|.+++.|+.||.++   ++.+...|||.+.  |
T Consensus        17 ~~~vt~~~F~~~v~~~~~~vlVdF~A~wCr~gpCk~iaPvleela~e~~~~v~~~KVdvDe---~~~la~~ygV~si--P   91 (137)
T 2qsi_A           17 PTLVDEATVDDFIAHSGKIVVLFFRGDAVRFPEAADLAVVLPELINAFPGRLVAAEVAAEA---ERGLMARFGVAVC--P   91 (137)
T ss_dssp             CEEECTTTHHHHHHTSSSEEEEEECCCTTTCTTHHHHHHHHHHHHHTSTTTEEEEEECGGG---HHHHHHHHTCCSS--S
T ss_pred             CcccCHhHHHHHHhcCCCcEEEEEeCCccCCCchhhHHhHHHHHHHHccCCcEEEEEECCC---CHHHHHHcCCccC--C
Confidence            34788999988765555 7788888977   689999999999999999999999999988   6799999999998  9


Q ss_pred             EEEEEeCCCCceecCCCCCCHHHHHHHHHHHhc
Q 013976          229 VLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  261 (432)
Q Consensus       229 ~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  261 (432)
                      +++++.+++ ..-...|..+.+.|.++|+.++.
T Consensus        92 TlilFkdG~-~v~~~vG~~~k~~l~~~l~~~l~  123 (137)
T 2qsi_A           92 SLAVVQPER-TLGVIAKIQDWSSYLAQIGAMLA  123 (137)
T ss_dssp             EEEEEECCE-EEEEEESCCCHHHHHHHHHHHHH
T ss_pred             EEEEEECCE-EEEEEeCCCCHHHHHHHHHHHhc
Confidence            999997664 33456788999999999999874

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=99.04  E-value=5.9e-10  Score=91.37  Aligned_cols=91  Identities=15%  Similarity=0.344  Sum_probs=76.3

Q ss_pred             CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCcc------------------------c-ccCCCC
Q 013976          296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE------------------------H-HRAKSD  350 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~------------------------~-~~~~i~  350 (432)
                      .++++||.||++||++|+.+.+.+.++...+.+. ++.++.|+++.+.                        . ..+++.
T Consensus        29 ~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~-~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~  107 (152)
T 2lja_A           29 KGKYIYIDVWATWCGPCRGELPALKELEEKYAGK-DIHFVSLSCDKNKKAWENMVTKDQLKGIQLHMGTDRTFMDAYLIN  107 (152)
T ss_dssp             TTSEEEEEECCSSCCGGGGTHHHHHHHHHHSTTS-SEEEEEEECCSCHHHHHHHHHHHTCCSEEEECSSCTHHHHHTTCC
T ss_pred             CCCEEEEEEECCcCHhHHHHhHHHHHHHHHhccC-CeEEEEEEccCcHHHHHHHHHhcCCCCceeecCcchhHHHHcCcC
Confidence            3589999999999999999999999999999763 6999999988763                        1 468999


Q ss_pred             CCceEEEEe-CCCcccCceeccCCCCHHHHHHHHHhcCCCC
Q 013976          351 GFPTILFFP-AGNKSFDPINVDVDRTVVALYKFLKKNASIP  390 (432)
Q Consensus       351 ~~P~i~~~~-~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~  390 (432)
                      ++|+++++. +|..+.   .+.|..+.+.|.++|++..+..
T Consensus       108 ~~P~~~lid~~G~i~~---~~~g~~~~~~l~~~l~~~~~~~  145 (152)
T 2lja_A          108 GIPRFILLDRDGKIIS---ANMTRPSDPKTAEKFNELLGLE  145 (152)
T ss_dssp             SSCCEEEECTTSCEEE---SSCCCTTCHHHHHHHHHHHTCC
T ss_pred             CCCEEEEECCCCeEEE---ccCCCCCHHHHHHHHHHHhccc
Confidence            999999996 666553   5678889999999999887643

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.04  E-value=6.6e-10  Score=96.58  Aligned_cols=109  Identities=14%  Similarity=0.183  Sum_probs=94.5

Q ss_pred             CCceeecCCCchhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCc
Q 013976          150 LPLVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPK  228 (432)
Q Consensus       150 ~p~v~~l~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P  228 (432)
                      .+.+..++.+++......+++++|.||++| +.|+.+.+.|.+++.++.+++.|+.||++.   ++.+++.||+.+.  |
T Consensus        96 ~~~v~~l~~~~f~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~~~---~~~l~~~~~v~~~--P  170 (210)
T 3apq_A           96 DPEIITLERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGD---DRMLCRMKGVNSY--P  170 (210)
T ss_dssp             CTTSEECCHHHHHHHHHHSCCEEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTT---CHHHHHHTTCCSS--S
T ss_pred             CCceEEecHHHHHHHHccCCcEEEEEeCCCChhHHHHHHHHHHHHHHhcCceEEEEEECCc---cHHHHHHcCCCcC--C
Confidence            345778888899887778888899999999 999999999999999999999999999998   5689999999988  9


Q ss_pred             EEEEEeCCCCceecCCCCCCHHHHHHHHHHHhcCCc
Q 013976          229 VLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKL  264 (432)
Q Consensus       229 ~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g~l  264 (432)
                      +++++..+ .....+.|..+.+.|.+|+.+.++..+
T Consensus       171 t~~~~~~G-~~~~~~~G~~~~~~l~~~i~~~l~~~~  205 (210)
T 3apq_A          171 SLFIFRSG-MAAVKYNGDRSKESLVAFAMQHVRSTV  205 (210)
T ss_dssp             EEEEECTT-SCCEECCSCCCHHHHHHHHHHHHHCCS
T ss_pred             eEEEEECC-CceeEecCCCCHHHHHHHHHHhCcccc
Confidence            99988443 345667899999999999999987544

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=99.03  E-value=9.3e-10  Score=84.87  Aligned_cols=102  Identities=17%  Similarity=0.167  Sum_probs=87.1

Q ss_pred             CceeecCCCchhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhcc---CceEEEEEecCCcccccchhhhhCCCCCC
Q 013976          151 PLVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFK---GKLIFVYVQMDNEDVGKPVSEYFGITGEA  226 (432)
Q Consensus       151 p~v~~l~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~---~~i~f~~vd~~~~~~~~~l~~~~~i~~~~  226 (432)
                      ..+..++.+++...+. ++++++.||++| +.|+.+.+.+.++++++.   ..+.|+.+|++.   .+.+++.|++... 
T Consensus         5 ~~v~~l~~~~~~~~~~-~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~---~~~l~~~~~v~~~-   79 (111)
T 3uvt_A            5 STVLALTENNFDDTIA-EGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTA---ERNICSKYSVRGY-   79 (111)
T ss_dssp             CCSEECCTTTHHHHHH-SSEEEEEEECSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTT---CHHHHHHTTCCSS-
T ss_pred             CcceEcChhhHHHHhc-CCcEEEEEECCCChhHHHhhHHHHHHHHHhhccCCceEEEEEeccc---cHhHHHhcCCCcc-
Confidence            3578899999998877 568888899999 999999999999999986   469999999998   5689999999988 


Q ss_pred             CcEEEEEeCCCCceecCCCCCCHHHHHHHHHHH
Q 013976          227 PKVLAYTGNDDAKKHILDGELTLDKIKTFGEDF  259 (432)
Q Consensus       227 ~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~  259 (432)
                       |+++++.++. ....+.|..+.+.|.+|+.+.
T Consensus        80 -Pt~~~~~~g~-~~~~~~g~~~~~~l~~~l~~~  110 (111)
T 3uvt_A           80 -PTLLLFRGGK-KVSEHSGGRDLDSLHRFVLSQ  110 (111)
T ss_dssp             -SEEEEEETTE-EEEEECSCCSHHHHHHHHHHH
T ss_pred             -cEEEEEeCCc-EEEeccCCcCHHHHHHHHHhc
Confidence             9998885443 445678999999999999863

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=99.03  E-value=2e-10  Score=87.11  Aligned_cols=75  Identities=13%  Similarity=0.146  Sum_probs=64.4

Q ss_pred             cEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCcccCceeccCCCCH
Q 013976          299 DVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTV  376 (432)
Q Consensus       299 ~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~~~g~~~~~~~~y~g~~~~  376 (432)
                      ..|++|+++||++|+.+.+.+++++..+.    +.+..+|+++++.  .++++. +|++++|.+|+.+     +.|..+.
T Consensus        30 ~~vv~y~~~~C~~C~~a~~~L~~l~~e~~----i~~~~vDId~d~~l~~~ygv~-VP~l~~~~dG~~v-----~~g~~~~   99 (107)
T 2fgx_A           30 RKLVVYGREGCHLCEEMIASLRVLQKKSW----FELEVINIDGNEHLTRLYNDR-VPVLFAVNEDKEL-----CHYFLDS   99 (107)
T ss_dssp             CCEEEEECSSCHHHHHHHHHHHHHHHHSC----CCCEEEETTTCHHHHHHSTTS-CSEEEETTTTEEE-----ECSSCCC
T ss_pred             cEEEEEeCCCChhHHHHHHHHHHHHHhcC----CeEEEEECCCCHHHHHHhCCC-CceEEEEECCEEE-----EecCCCH
Confidence            57999999999999999999999998863    7888999997766  578887 9999999988653     4577899


Q ss_pred             HHHHHHH
Q 013976          377 VALYKFL  383 (432)
Q Consensus       377 ~~l~~fi  383 (432)
                      +.|.+||
T Consensus       100 ~~L~~~L  106 (107)
T 2fgx_A          100 DVIGAYL  106 (107)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9999887

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=99.03  E-value=1.8e-10  Score=84.24  Aligned_cols=74  Identities=11%  Similarity=0.041  Sum_probs=59.7

Q ss_pred             EEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCcccCceeccCCCCHHH
Q 013976          301 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVA  378 (432)
Q Consensus       301 lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~~~g~~~~~~~~y~g~~~~~~  378 (432)
                      +++||++||++|+.+.|.+++++..+       +..+|+++++.  .++++. +|++++ .+|+.+    .  |..+.+.
T Consensus         3 vv~f~a~~C~~C~~~~~~L~~~~~~~-------~~~vdid~~~~l~~~~g~~-vPtl~~-~~G~~v----~--g~~~~~~   67 (87)
T 1ttz_A            3 LTLYQRDDCHLCDQAVEALAQARAGA-------FFSVFIDDDAALESAYGLR-VPVLRD-PMGREL----D--WPFDAPR   67 (87)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHTTCCC-------EEEEECTTCHHHHHHHTTT-CSEEEC-TTCCEE----E--SCCCHHH
T ss_pred             EEEEECCCCchHHHHHHHHHHHHHhh-------eEEEECCCCHHHHHHhCCC-cCeEEE-ECCEEE----e--CCCCHHH
Confidence            78999999999999999998874322       67899998776  578998 999998 766543    2  7889999


Q ss_pred             HHHHHHhcCCC
Q 013976          379 LYKFLKKNASI  389 (432)
Q Consensus       379 l~~fi~~~~~~  389 (432)
                      |.++|.+.+..
T Consensus        68 L~~~l~~~~~~   78 (87)
T 1ttz_A           68 LRAWLDAAPHA   78 (87)
T ss_dssp             HHHHHHTCC--
T ss_pred             HHHHHHHHHHH
Confidence            99999987653

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=99.03  E-value=5.9e-10  Score=88.62  Aligned_cols=103  Identities=11%  Similarity=0.106  Sum_probs=84.7

Q ss_pred             CCceeecCCCchhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCc
Q 013976          150 LPLVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPK  228 (432)
Q Consensus       150 ~p~v~~l~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P  228 (432)
                      .|.+...+.+.+......++++++.||++| +.|+.+.+.+.++++++.+++.|+.+|++.   .+.+++.|++.+.  |
T Consensus        24 ~~~~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~---~~~l~~~~~v~~~--P   98 (128)
T 3ul3_B           24 VPRLQQNGSNIINGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKRIYLLKVDLDK---NESLARKFSVKSL--P   98 (128)
T ss_dssp             --CCCCCCCSSSSBTTSCCSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGEEEEEEEGGG---CHHHHHHTTCCSS--S
T ss_pred             CCccccCCccHHHHHHccCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCC---CHHHHHHcCCCCc--C
Confidence            444555556666666677778889999999 999999999999999999889999999998   5689999999988  9


Q ss_pred             EEEEEeCCCCceecCCCCCCHHHHHHHHHH
Q 013976          229 VLAYTGNDDAKKHILDGELTLDKIKTFGED  258 (432)
Q Consensus       229 ~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~  258 (432)
                      +++++.++ .....+.|..+.+.|.+|+++
T Consensus        99 t~~~~~~G-~~~~~~~G~~~~~~l~~~l~~  127 (128)
T 3ul3_B           99 TIILLKNK-TMLARKDHFVSSNDLIALIKK  127 (128)
T ss_dssp             EEEEEETT-EEEEEESSCCCHHHHHHHHTT
T ss_pred             EEEEEECC-EEEEEecCCCCHHHHHHHHHh
Confidence            99988543 345567889999999999875

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.02  E-value=1.2e-09  Score=89.57  Aligned_cols=93  Identities=14%  Similarity=0.190  Sum_probs=75.4

Q ss_pred             CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCc-----------------------cc--ccCCCC
Q 013976          296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN-----------------------EH--HRAKSD  350 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-----------------------~~--~~~~i~  350 (432)
                      .++++||.||++||++|+.+.+.+.+++..+.+. ++.++.++.+..                       ..  ..+++.
T Consensus        27 ~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~-~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~  105 (153)
T 2l5o_A           27 QGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNK-NFQVLAVAQPIDPIESVRQYVKDYGLPFTVMYDADKAVGQAFGTQ  105 (153)
T ss_dssp             TTCEEEEEEECTTCTTHHHHHHHHHHHHHHGGGT-TEEEEEEECTTSCHHHHHHHHHHTTCCSEEEECSSCHHHHHHTCC
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHhccC-CeEEEEEecCCCCHHHHHHHHHHcCCCceEEcCchHHHHHHcCCC
Confidence            4689999999999999999999999999999863 688887774321                       11  467999


Q ss_pred             CCceEEEE-eCCCcccCceeccCCCCHHHHHHHHHhcCCCCCc
Q 013976          351 GFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNASIPFK  392 (432)
Q Consensus       351 ~~P~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~~~  392 (432)
                      ++|+++++ ++|..+.   .+.|..+.+.|.++|++.+.....
T Consensus       106 ~~P~~~lid~~G~i~~---~~~g~~~~~~l~~~l~~ll~~~~~  145 (153)
T 2l5o_A          106 VYPTSVLIGKKGEILK---TYVGEPDFGKLYQEIDTAWRNSDA  145 (153)
T ss_dssp             SSSEEEEECSSSCCCE---EEESSCCHHHHHHHHHHHHHCCSS
T ss_pred             ccCeEEEECCCCcEEE---EEcCCCCHHHHHHHHHHHHHhhhh
Confidence            99999999 6676553   688999999999999988765443

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=99.02  E-value=8e-10  Score=88.59  Aligned_cols=86  Identities=22%  Similarity=0.320  Sum_probs=70.8

Q ss_pred             CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCC----------------------------ccc--c
Q 013976          296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT----------------------------NEH--H  345 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~----------------------------~~~--~  345 (432)
                      .++++||.||++||++|+.+.+.+.+++..+..  ++.++.+++..                            +..  .
T Consensus        21 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~   98 (138)
T 4evm_A           21 KGKKVYLKFWASWCSICLASLPDTDEIAKEAGD--DYVVLTVVSPGHKGEQSEADFKNWYKGLDYKNLPVLVDPSGKLLE   98 (138)
T ss_dssp             TTSEEEEEECCTTCHHHHHHHHHHHHHHHTCTT--TEEEEEEECTTSTTCCCHHHHHHHHTTCCCTTCCEEECTTCHHHH
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCC--CcEEEEEEcCCCCchhhHHHHHHHHhhcCCCCeeEEECcchHHHH
Confidence            468999999999999999999999999998655  68888885432                            111  4


Q ss_pred             cCCCCCCceEEEE-eCCCcccCceeccCCCCHHHHHHHHHhc
Q 013976          346 RAKSDGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKN  386 (432)
Q Consensus       346 ~~~i~~~P~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~  386 (432)
                      .+++.++|+++++ ++|+.+.   .+.|..+.+.|.++|++.
T Consensus        99 ~~~v~~~P~~~lid~~G~i~~---~~~g~~~~~~l~~~l~~l  137 (138)
T 4evm_A           99 TYGVRSYPTQAFIDKEGKLVK---THPGFMEKDAILQTLKEL  137 (138)
T ss_dssp             HTTCCSSSEEEEECTTCCEEE---EEESCCCHHHHHHHHHHC
T ss_pred             HcCcccCCeEEEECCCCcEEE---eecCCCcHHHHHHHHHhh
Confidence            6899999999999 6776554   788999999999999875

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=99.02  E-value=1.3e-09  Score=90.19  Aligned_cols=90  Identities=17%  Similarity=0.215  Sum_probs=73.9

Q ss_pred             CCCcEEEEEeCCCChhhhh-hHHHHHHHHHHhcCCCCEEEEEEeCC----------------------------Cc-c--
Q 013976          296 ESKDVLLEIYAPWCGHCQA-FEPTYNKLAKHLRGVDSIVIAKMDGT----------------------------TN-E--  343 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~c~~-~~~~~~~la~~~~~~~~~~~~~id~~----------------------------~~-~--  343 (432)
                      .++++||.||++||++|.. +.|.+.+++..+++. ++.++.|+++                            .. .  
T Consensus        29 ~gk~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~~-~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  107 (160)
T 3lor_A           29 RGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDES-QVQVIGLHSVFEHHDVMTPEALKVFIDEFGIKFPVAVDMPREGQ  107 (160)
T ss_dssp             TTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTT-TEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCTTC
T ss_pred             CCCEEEEEEEcCCCcchhhhhhHHHHHHHHHhCcC-CcEEEEEeccccccccCCHHHHHHHHHHcCCCCcEEECCccccc
Confidence            4689999999999999999 699999999999874 6999998863                            11 1  


Q ss_pred             ----c-ccCCCCCCceEEEE-eCCCcccCceeccCCCCHHHHHHHHHhcCCC
Q 013976          344 ----H-HRAKSDGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNASI  389 (432)
Q Consensus       344 ----~-~~~~i~~~P~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~  389 (432)
                          . ..+++.++|+++++ ++|+.+.   .+.|..+.+.|.++|++.++.
T Consensus       108 ~~~~~~~~~~v~~~P~~~lid~~G~i~~---~~~g~~~~~~l~~~i~~ll~~  156 (160)
T 3lor_A          108 RIPSTMKKYRLEGTPSIILADRKGRIRQ---VQFGQVDDFVLGLLLGSLLSE  156 (160)
T ss_dssp             SSCHHHHHTTCCSSSEEEEECTTSBEEE---EEESCCCHHHHHHHHHHHHTC
T ss_pred             hhhhHHHhcccCccceEEEECCCCcEEE---EecCcCCHHHHHHHHHHHHhc
Confidence                2 46899999999999 5666543   677999999999999988754

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=99.02  E-value=8.7e-10  Score=88.53  Aligned_cols=106  Identities=8%  Similarity=0.045  Sum_probs=84.3

Q ss_pred             eeecCC-Cchhhhc--cCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCc
Q 013976          153 VTIFTR-ENAPSVF--ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPK  228 (432)
Q Consensus       153 v~~l~~-~~~~~~~--~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P  228 (432)
                      +..++. ++|+..+  ...+++++-|+++| ++|+.+.+.++++|+++.+++.|+.||+++   ++++...|+|...  |
T Consensus        23 v~~l~t~~~f~~~v~~~~~k~VVVdF~A~WCgPCk~m~PvleelA~e~~~~v~f~kVDVDe---~~e~a~~y~V~si--P   97 (160)
T 2av4_A           23 LQHLNSGWAVDQAIVNEDERLVCIRFGHDYDPDCMKMDELLYKVADDIKNFCVIYLVDITE---VPDFNTMYELYDP--V   97 (160)
T ss_dssp             CEECCSHHHHHHHHHHCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTT---CCTTTTTTTCCSS--E
T ss_pred             hhccCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCCcEEEEEECCC---CHHHHHHcCCCCC--C
Confidence            444444 6676554  35667888899999 999999999999999999999999999998   6799999999887  9


Q ss_pred             EEEEEeCCCCce-e-------cCCCCCC-HHHHHHHHHHHhcCC
Q 013976          229 VLAYTGNDDAKK-H-------ILDGELT-LDKIKTFGEDFLEGK  263 (432)
Q Consensus       229 ~i~i~~~~~~~~-y-------~~~~~~~-~~~i~~fi~~~~~g~  263 (432)
                      +++++.+++... -       ...|... .+.|.++|+.++.|-
T Consensus        98 T~~fFk~G~~v~vd~Gtgd~~k~vGa~~~k~~l~~~ie~~~r~a  141 (160)
T 2av4_A           98 SVMFFYRNKHMMIDLGTGNNNKINWPMNNKQEFIDIVETIFRGA  141 (160)
T ss_dssp             EEEEEETTEEEEEECSSSCCSCBCSCCCCHHHHHHHHHHHHHHH
T ss_pred             EEEEEECCEEEEEecCCCCcCeEEeecCCHHHHHHHHHHHHHHh
Confidence            998886553211 1       5667666 899999998887643

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=99.00  E-value=9.4e-10  Score=90.84  Aligned_cols=90  Identities=14%  Similarity=0.177  Sum_probs=74.1

Q ss_pred             CCCcEEEEEeCCCChhhhhh-HHHHHHHHHHhcCCCCEEEEEEeCCC----------------------------cc---
Q 013976          296 ESKDVLLEIYAPWCGHCQAF-EPTYNKLAKHLRGVDSIVIAKMDGTT----------------------------NE---  343 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~c~~~-~~~~~~la~~~~~~~~~~~~~id~~~----------------------------~~---  343 (432)
                      .++++||.||++||++|+.. .|.+.+++..+++. ++.++.|+++.                            ..   
T Consensus        27 ~gk~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~~~-~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  105 (158)
T 3eyt_A           27 RGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPED-KVAVLGLHTVFEHHEAMTPISLKAFLHEYRIKFPVGVDQPGDGA  105 (158)
T ss_dssp             TTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTT-TEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCSSS
T ss_pred             CCCEEEEEEECCcCcchhhhhhHHHHHHHHHhCcC-CEEEEEEEecccccccCCHHHHHHHHHHcCCCceEEEcCccchh
Confidence            46899999999999999995 99999999999863 69999988641                            11   


Q ss_pred             ---c-ccCCCCCCceEEEE-eCCCcccCceeccCCCCHHHHHHHHHhcCCC
Q 013976          344 ---H-HRAKSDGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNASI  389 (432)
Q Consensus       344 ---~-~~~~i~~~P~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~  389 (432)
                         . ..+++.++|+++++ ++|..+.   .+.|..+.+.|.++|++.++.
T Consensus       106 ~~~~~~~~~v~~~P~~~lid~~G~i~~---~~~g~~~~~~l~~~i~~ll~~  153 (158)
T 3eyt_A          106 MPRTMAAYQMRGTPSLLLIDKAGDLRA---HHFGDVSELLLGAEIATLLGE  153 (158)
T ss_dssp             SCHHHHHTTCCSSSEEEEECTTSEEEE---EEESCCCHHHHHHHHHHHHTS
T ss_pred             hHHHHHHcCCCCCCEEEEECCCCCEEE---EEeCCCCHHHHHHHHHHHhcc
Confidence               1 46899999999999 5666543   677899999999999998764

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=99.00  E-value=1.8e-09  Score=87.43  Aligned_cols=83  Identities=12%  Similarity=0.191  Sum_probs=66.8

Q ss_pred             CCcEEEEEeCCCChhhhhhHHHHHH---HHHHhcCCCCEEEEEEeCCCcc--------------------------cccC
Q 013976          297 SKDVLLEIYAPWCGHCQAFEPTYNK---LAKHLRGVDSIVIAKMDGTTNE--------------------------HHRA  347 (432)
Q Consensus       297 ~~~~lv~f~~~~c~~c~~~~~~~~~---la~~~~~~~~~~~~~id~~~~~--------------------------~~~~  347 (432)
                      ++++||.||++||++|+...|.+.+   +...+++. ++.++.|+.+.+.                          ...+
T Consensus        31 gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~-~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  109 (142)
T 3eur_A           31 AEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAK-KLKVLSIYPDEELDEWKKHRNDFAKEWTNGYDKELVIKNKNLY  109 (142)
T ss_dssp             CSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTT-SEEEEEEECSSCHHHHHHHGGGSCTTSEEEECTTCHHHHTTCS
T ss_pred             CCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccC-CeEEEEEEcCCCHHHHHHHHHhcccccccccCccchhhhhhhc
Confidence            5899999999999999999999999   99999763 7999999987651                          2467


Q ss_pred             CCCCCceEEEEeCCCcccCceeccCCCCHHHHHHHHHh
Q 013976          348 KSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKK  385 (432)
Q Consensus       348 ~i~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~  385 (432)
                      ++.++|+++++..+..+    .+.+ .+.+.|.+||++
T Consensus       110 ~v~~~P~~~lid~~G~i----~~~~-~~~~~l~~~l~e  142 (142)
T 3eur_A          110 DLRAIPTLYLLDKNKTV----LLKD-ATLQKVEQYLAE  142 (142)
T ss_dssp             CCTTCSEEEEECTTCBE----EEEE-ECHHHHHHHHHC
T ss_pred             CCCcCCeEEEECCCCcE----EecC-CCHHHHHHHHhC
Confidence            89999999999544443    3333 368899998864

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=99.00  E-value=1.5e-09  Score=88.33  Aligned_cols=86  Identities=17%  Similarity=0.273  Sum_probs=70.0

Q ss_pred             CCCcEEEEEeCCCChhhhhhHHHHHHHHHHh-cCCCCEEEEEEeCCCcc-----------------------c----ccC
Q 013976          296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHL-RGVDSIVIAKMDGTTNE-----------------------H----HRA  347 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~-~~~~~~~~~~id~~~~~-----------------------~----~~~  347 (432)
                      .++++||.||++||++|+.+.|.+.+++..+ .+ .++.++.++++...                       .    ..+
T Consensus        32 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~-~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  110 (148)
T 3fkf_A           32 RNRYLLLNFWASWCDPQPEANAELKRLNKEYKKN-KNFAMLGISLDIDREAWETAIKKDTLSWDQVCDFTGLSSETAKQY  110 (148)
T ss_dssp             TTSEEEEEEECGGGCCCHHHHHHHHHHHHHTTTC-TTEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHHT
T ss_pred             CCcEEEEEEECCCCHHHHHHhHHHHHHHHHhcCC-CCeEEEEEECCCCHHHHHHHHHHcCCCceEEEccCCcchHHHHhc
Confidence            4689999999999999999999999999999 54 36999999888643                       1    578


Q ss_pred             CCCCCceEEEE-eCCCcccCceeccCCCCHHHHHHHHHhcCC
Q 013976          348 KSDGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNAS  388 (432)
Q Consensus       348 ~i~~~P~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  388 (432)
                      ++.++|+++++ ++|..+     +... +.+.+.++|++.+.
T Consensus       111 ~v~~~P~~~lid~~G~i~-----~~~~-~~~~l~~~l~~ll~  146 (148)
T 3fkf_A          111 AILTLPTNILLSPTGKIL-----ARDI-QGEALTGKLKELLK  146 (148)
T ss_dssp             TCCSSSEEEEECTTSBEE-----EESC-CHHHHHHHHHHHC-
T ss_pred             CCCCcCEEEEECCCCeEE-----EecC-CHHHHHHHHHHHHc
Confidence            99999999999 566543     2222 88999999988764

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=98.99  E-value=1.3e-09  Score=83.32  Aligned_cols=100  Identities=14%  Similarity=0.182  Sum_probs=82.7

Q ss_pred             eeecCC-Cchhhhcc--CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCc
Q 013976          153 VTIFTR-ENAPSVFE--SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPK  228 (432)
Q Consensus       153 v~~l~~-~~~~~~~~--~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P  228 (432)
                      +.+++. +++...+.  .+++.++.||++| +.|+.+.+.+.+++.++.+.+.|+.+|++.   .+.+++.||+.+.  |
T Consensus         2 v~~l~~~~~~~~~l~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~v~~~--P   76 (106)
T 1xwb_A            2 VYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDE---CEDIAMEYNISSM--P   76 (106)
T ss_dssp             EEECCSHHHHHHHHHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTT---CHHHHHHTTCCSS--S
T ss_pred             ceecCCHHHHHHHHHhcCCCEEEEEEECCcCHHHHHhhHHHHHHHHHhCCCeEEEEEeccc---hHHHHHHcCCCcc--c
Confidence            456677 77777666  6777888899999 999999999999999998889999999987   5689999999988  9


Q ss_pred             EEEEEeCCCCceecCCCCCCHHHHHHHHHHH
Q 013976          229 VLAYTGNDDAKKHILDGELTLDKIKTFGEDF  259 (432)
Q Consensus       229 ~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~  259 (432)
                      +++++.++. ....+.| .+.+.+.+|++++
T Consensus        77 t~~~~~~G~-~~~~~~g-~~~~~l~~~i~~~  105 (106)
T 1xwb_A           77 TFVFLKNGV-KVEEFAG-ANAKRLEDVIKAN  105 (106)
T ss_dssp             EEEEEETTE-EEEEEES-CCHHHHHHHHHHT
T ss_pred             EEEEEcCCc-EEEEEcC-CCHHHHHHHHHHh
Confidence            998885442 3445667 7899999999875

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=98.99  E-value=9.2e-10  Score=90.48  Aligned_cols=125  Identities=16%  Similarity=0.134  Sum_probs=89.4

Q ss_pred             CceeecC-CCchhhhccC--CCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCC
Q 013976          151 PLVTIFT-RENAPSVFES--PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEA  226 (432)
Q Consensus       151 p~v~~l~-~~~~~~~~~~--~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~  226 (432)
                      ..+..++ .+++...+..  ++++++.||++| +.|+.+.+.|.++++++. ++.|+.+|++.   ++.+++.||+.+. 
T Consensus        12 ~~v~~l~~~~~~~~~~~~~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~vd~~~---~~~l~~~~~v~~~-   86 (153)
T 2wz9_A           12 AAVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELP-QVSFVKLEAEG---VPEVSEKYEISSV-   86 (153)
T ss_dssp             CCSEEECSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTT---SHHHHHHTTCCSS-
T ss_pred             CCeEEcCCHHHHHHHHHhcCCCeEEEEEECCCCHhHHHHHHHHHHHHHHcC-CeEEEEEECCC---CHHHHHHcCCCCC-
Confidence            3455665 4777776665  778889999999 999999999999999985 59999999988   5689999999988 


Q ss_pred             CcEEEEEeCCCCceecCCCCCCHHHHHHHHHHHhcCCcCccccCCCCCCCCCCceEEEecccchhhh
Q 013976          227 PKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIV  293 (432)
Q Consensus       227 ~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g~l~~~~~se~~p~~~~~~v~~l~~~~~~~~~  293 (432)
                       |+++++.++ .....+.| .+.+.|.+||+++++....          .....+..++..+|++..
T Consensus        87 -Pt~~~~~~G-~~~~~~~G-~~~~~l~~~i~~~l~~~~~----------~~~~~~~~l~~~~f~~~~  140 (153)
T 2wz9_A           87 -PTFLFFKNS-QKIDRLDG-AHAPELTKKVQRHASSGSF----------LPSAKVKVDTDPNSSSVD  140 (153)
T ss_dssp             -SEEEEEETT-EEEEEEES-SCHHHHHHHHHHHSCTTSS----------CSCCCCCCC---------
T ss_pred             -CEEEEEECC-EEEEEEeC-CCHHHHHHHHHHHhccccC----------CCccccccCCCCChhhHH
Confidence             999999733 23344556 5788999999998864322          113346667888888755

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=98.99  E-value=8.8e-10  Score=87.18  Aligned_cols=102  Identities=14%  Similarity=0.099  Sum_probs=86.3

Q ss_pred             ceeecCC-CchhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcE
Q 013976          152 LVTIFTR-ENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKV  229 (432)
Q Consensus       152 ~v~~l~~-~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~  229 (432)
                      .+.+++. +++...+..++++++.||++| +.|+.+.+.+.+++.++. .+.|+.+|++.   .+.+++.|++...  |+
T Consensus        20 mv~~l~~~~~f~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~vd~d~---~~~l~~~~~v~~~--Pt   93 (125)
T 1r26_A           20 SVVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFP-TVKFAKVDADN---NSEIVSKCRVLQL--PT   93 (125)
T ss_dssp             CCEEECCHHHHHHHHHSSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT-TSEEEEEETTT---CHHHHHHTTCCSS--SE
T ss_pred             ceEECCCHHHHHHHHccCCEEEEEEECCcCHhHHHHHHHHHHHHHHCC-CCEEEEEECCC---CHHHHHHcCCCcc--cE
Confidence            3778888 888888878888899999999 999999999999999995 49999999987   5689999999988  99


Q ss_pred             EEEEeCCCCceecCCCCCCHHHHHHHHHHHhc
Q 013976          230 LAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  261 (432)
Q Consensus       230 i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  261 (432)
                      ++++..+. ....+.| .+.+.|.+|++++++
T Consensus        94 ~~i~~~G~-~~~~~~G-~~~~~l~~~l~~~l~  123 (125)
T 1r26_A           94 FIIARSGK-MLGHVIG-ANPGMLRQKLRDIIK  123 (125)
T ss_dssp             EEEEETTE-EEEEEES-SCHHHHHHHHHHHHH
T ss_pred             EEEEeCCe-EEEEEeC-CCHHHHHHHHHHHhc
Confidence            98885442 3344567 789999999999875

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=98.99  E-value=1.7e-09  Score=88.57  Aligned_cols=92  Identities=16%  Similarity=0.251  Sum_probs=73.7

Q ss_pred             CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc------------------------ccCCCCC
Q 013976          296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------------------------HRAKSDG  351 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~------------------------~~~~i~~  351 (432)
                      .++++||.||++||++|..+.+.+.+++..+.+. ++.++.++++.+..                        ..+++.+
T Consensus        27 ~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~-~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  105 (152)
T 3gl3_A           27 TGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAK-GFQVVAVNLDAKTGDAMKFLAQVPAEFTVAFDPKGQTPRLYGVKG  105 (152)
T ss_dssp             TTSEEEEEEECTTCTHHHHHHHHHHHHHHHHGGG-TEEEEEEECCSSHHHHHHHHHHSCCCSEEEECTTCHHHHHTTCCS
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcC-CeEEEEEECCCCHHHHHHHHHHcCCCCceeECCcchhHHHcCCCC
Confidence            4689999999999999999999999999999874 58999999886541                        3589999


Q ss_pred             CceEEEE-eCCCcccCceeccC--CCCHHHHHHHHHhcCCCCC
Q 013976          352 FPTILFF-PAGNKSFDPINVDV--DRTVVALYKFLKKNASIPF  391 (432)
Q Consensus       352 ~P~i~~~-~~g~~~~~~~~y~g--~~~~~~l~~fi~~~~~~~~  391 (432)
                      +|+++++ ++|..+.   .+.|  ..+.+.|.++|+++.....
T Consensus       106 ~P~~~lid~~G~i~~---~~~g~~~~~~~~l~~~i~~~~~~~~  145 (152)
T 3gl3_A          106 MPTSFLIDRNGKVLL---QHVGFRPADKEALEQQILAALGGNE  145 (152)
T ss_dssp             SSEEEEECTTSBEEE---EEESCCTTTHHHHHHHHHHHTC---
T ss_pred             CCeEEEECCCCCEEE---EEccCCCcCHHHHHHHHHHHHcccc
Confidence            9999999 6666543   5666  3466999999999876544

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=98.98  E-value=8.6e-10  Score=85.30  Aligned_cols=102  Identities=22%  Similarity=0.284  Sum_probs=83.4

Q ss_pred             eeec-CCCchhhhccC----CCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCC
Q 013976          153 VTIF-TRENAPSVFES----PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEA  226 (432)
Q Consensus       153 v~~l-~~~~~~~~~~~----~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~  226 (432)
                      +..+ +.+++...+..    ++++++.||++| +.|+.+.+.+.+++.++.+++.|+.+|++.   .+.+++.|++.+. 
T Consensus         4 v~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~---~~~~~~~~~v~~~-   79 (112)
T 1ep7_A            4 VIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDA---VAAVAEAAGITAM-   79 (112)
T ss_dssp             EEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTT---THHHHHHHTCCBS-
T ss_pred             EEEecCHHHHHHHHHhhcccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcCCCeEEEEEECCc---hHHHHHHcCCCcc-
Confidence            4455 45667766654    678888999999 999999999999999999889999999987   5689999999988 


Q ss_pred             CcEEEEEeCCCCceecCCCCCCHHHHHHHHHHHhc
Q 013976          227 PKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  261 (432)
Q Consensus       227 ~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  261 (432)
                       |+++++..+ .....+.|. +.+.|.+|++++++
T Consensus        80 -Pt~~~~~~G-~~~~~~~G~-~~~~l~~~l~~~l~  111 (112)
T 1ep7_A           80 -PTFHVYKDG-VKADDLVGA-SQDKLKALVAKHAA  111 (112)
T ss_dssp             -SEEEEEETT-EEEEEEESC-CHHHHHHHHHHHHC
T ss_pred             -cEEEEEECC-eEEEEEcCC-CHHHHHHHHHHHhc
Confidence             999888543 234456776 99999999998874

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=98.98  E-value=3.2e-09  Score=81.91  Aligned_cols=104  Identities=16%  Similarity=0.209  Sum_probs=84.7

Q ss_pred             CCceeecCCCchhhhcc--CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCC
Q 013976          150 LPLVTIFTRENAPSVFE--SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEA  226 (432)
Q Consensus       150 ~p~v~~l~~~~~~~~~~--~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~  226 (432)
                      ...+..++.+++...+.  .++++++.||++| +.|+.+.+.+.+++.++.+ +.|+.+|++..  ...+++.||+.+. 
T Consensus         4 ~~~v~~l~~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~--~~~~~~~~~v~~~-   79 (111)
T 2pu9_C            4 VGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLD-VIFLKLDCNQE--NKTLAKELGIRVV-   79 (111)
T ss_dssp             TTSEEEECTTTHHHHHTTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEECSST--THHHHHHHCCSBS-
T ss_pred             cCccEEechHHHHHHHHhcCCCEEEEEEECCcCHhHHHHCHHHHHHHHHCCC-eEEEEEecCcc--hHHHHHHcCCCee-
Confidence            45688899999988776  4677888899999 9999999999999999986 99999999832  5689999999988 


Q ss_pred             CcEEEEEeCCCCceecCCCCCCHHHHHHHHHHHh
Q 013976          227 PKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFL  260 (432)
Q Consensus       227 ~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~  260 (432)
                       |+++++..+ .....+.|. +.+.|.+|++.++
T Consensus        80 -Pt~~~~~~G-~~~~~~~G~-~~~~l~~~l~~~~  110 (111)
T 2pu9_C           80 -PTFKILKEN-SVVGEVTGA-KYDKLLEAIQAAR  110 (111)
T ss_dssp             -SEEEEESSS-SEEEEEESS-CHHHHHHHHHHHH
T ss_pred             -eEEEEEeCC-cEEEEEcCC-CHHHHHHHHHHhh
Confidence             998777443 233445665 5899999998875

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=98.98  E-value=3.7e-10  Score=89.61  Aligned_cols=104  Identities=10%  Similarity=0.094  Sum_probs=88.9

Q ss_pred             ceeecCCCchhhhccCCCcceEEEEEeC---cchhhhHHHHHHHHHhccCc-eEEEEEecCCcccccchhhhhCCCCCCC
Q 013976          152 LVTIFTRENAPSVFESPIKNQLLLFAVS---NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNEDVGKPVSEYFGITGEAP  227 (432)
Q Consensus       152 ~v~~l~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~a~~~~~~-i~f~~vd~~~~~~~~~l~~~~~i~~~~~  227 (432)
                      -+..++.++|+..+.++.++++.|+++|   ++|+.+.+.+.++|.+|.++ +.|+.||.++   ++.+...|||.+.  
T Consensus        18 g~~~~t~~~F~~~v~~~~~vlVdF~a~~crCgpCk~iaPvleela~e~~g~~v~~~KVdvDe---~~~lA~~ygV~sI--   92 (140)
T 2qgv_A           18 GWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLHEFPDYTWQVAIADLEQ---SEAIGDRFGAFRF--   92 (140)
T ss_dssp             TCEECCHHHHHHHHHTCSSEEEEECCCTTTCTTTTHHHHHHHHHHTTCTTSCCEEEECCHHH---HHHHHHHHTCCSS--
T ss_pred             CCccCCHHHHHHHHhCCCCEEEEEeCCcccCCcHHHHHhHHHHHHHHcCCCeEEEEEEECCC---CHHHHHHcCCccC--
Confidence            3558899999887766667777777887   68999999999999999999 9999999998   6799999999998  


Q ss_pred             cEEEEEeCCCCceecCCCCCCHHHHHHHHHHHhc
Q 013976          228 KVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  261 (432)
Q Consensus       228 P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  261 (432)
                      |+++++.+++ ..-...|..+.+.|.++|+.++.
T Consensus        93 PTlilFk~G~-~v~~~~G~~~k~~l~~~i~~~l~  125 (140)
T 2qgv_A           93 PATLVFTGGN-YRGVLNGIHPWAELINLMRGLVE  125 (140)
T ss_dssp             SEEEEEETTE-EEEEEESCCCHHHHHHHHHHHHC
T ss_pred             CEEEEEECCE-EEEEEecCCCHHHHHHHHHHHhc
Confidence            9999997664 33456788999999999999884

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.98  E-value=1.7e-09  Score=98.90  Aligned_cols=106  Identities=15%  Similarity=0.279  Sum_probs=92.3

Q ss_pred             CCceeecCCCchhhhccC--CCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCC
Q 013976          150 LPLVTIFTRENAPSVFES--PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEA  226 (432)
Q Consensus       150 ~p~v~~l~~~~~~~~~~~--~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~  226 (432)
                      .+.|.+++.++|..++..  +++++|.||++| ++|+.+.+.+.++++++.+++.|+.||++.   ++.+++.|||.+. 
T Consensus         6 ~~~v~~~~~~~f~~~~~~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~---~~~~~~~~~v~~~-   81 (287)
T 3qou_A            6 VENIVNINESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQFILAKLDCDA---EQMIAAQFGLRAI-   81 (287)
T ss_dssp             CTTEEECCTTTHHHHHTTTTTSCEEEEEECTTCTTTTTTHHHHHHHHHHHTSSSEEEEEETTT---CHHHHHTTTCCSS-
T ss_pred             CCccEECCHHHHHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEEeCcc---CHHHHHHcCCCCC-
Confidence            567999999999998754  678889999999 999999999999999999999999999998   5699999999988 


Q ss_pred             CcEEEEEeCCCCceecCCCCCCHHHHHHHHHHHhc
Q 013976          227 PKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  261 (432)
Q Consensus       227 ~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  261 (432)
                       |+++++..+. ....+.|..+.+.+.+|+...+.
T Consensus        82 -Pt~~~~~~G~-~~~~~~g~~~~~~l~~~l~~~lp  114 (287)
T 3qou_A           82 -PTVYLFQNGQ-PVDGFQGPQPEEAIRALLDXVLP  114 (287)
T ss_dssp             -SEEEEEETTE-EEEEEESCCCHHHHHHHHHHHSC
T ss_pred             -CeEEEEECCE-EEEEeeCCCCHHHHHHHHHHHcC
Confidence             9999885442 34457788999999999999874

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=98.96  E-value=1.3e-09  Score=85.74  Aligned_cols=105  Identities=17%  Similarity=0.247  Sum_probs=86.8

Q ss_pred             CCceeecCCCchhhhcc----CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCC
Q 013976          150 LPLVTIFTRENAPSVFE----SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITG  224 (432)
Q Consensus       150 ~p~v~~l~~~~~~~~~~----~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~  224 (432)
                      .+.+..++.+++...+.    .+++.++.||++| +.|+.+.+.|.+++.++.+ +.|+.+|++.   ++.+++.||+.+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~vd~~~---~~~~~~~~~v~~   87 (122)
T 2vlu_A           12 AEVISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPN-AVFLKVDVDE---LKPIAEQFSVEA   87 (122)
T ss_dssp             CCCEEECSHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTT---CHHHHHHTTCCS
T ss_pred             CcceeccCHHHHHHHHHHhhccCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-cEEEEEECCC---CHHHHHHcCCCc
Confidence            45677778888877654    3677888899999 9999999999999999988 9999999998   568999999998


Q ss_pred             CCCcEEEEEeCCCCceecCCCCCCHHHHHHHHHHHhcC
Q 013976          225 EAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEG  262 (432)
Q Consensus       225 ~~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g  262 (432)
                      .  |+++++.++ .....+.|.. .+.|.+|++.++++
T Consensus        88 ~--Pt~~~~~~G-~~~~~~~G~~-~~~l~~~l~~~l~~  121 (122)
T 2vlu_A           88 M--PTFLFMKEG-DVKDRVVGAI-KEELTAKVGLHAAA  121 (122)
T ss_dssp             S--SEEEEEETT-EEEEEEESSC-HHHHHHHHHHHHSC
T ss_pred             c--cEEEEEeCC-EEEEEEeCcC-HHHHHHHHHHHhcc
Confidence            8  999888543 2344567877 99999999998753

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=98.95  E-value=8.9e-10  Score=89.74  Aligned_cols=88  Identities=14%  Similarity=0.114  Sum_probs=71.9

Q ss_pred             CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCcc--------------------------c-ccCC
Q 013976          296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--------------------------H-HRAK  348 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~--------------------------~-~~~~  348 (432)
                      .++++||.||++||++|+.+.|.+.+++..+.+. ++.++.++++.+.                          . ..++
T Consensus        30 ~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~-~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  108 (148)
T 3hcz_A           30 QAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAK-GIQVYAANIERKDEEWLKFIRSKKIGGWLNVRDSKNHTDFKITYD  108 (148)
T ss_dssp             CCSEEEEEEECGGGCTTCSHHHHHHHHHHHHGGG-TEEEEEEECCSSSHHHHHHHHHHTCTTSEEEECTTCCCCHHHHHC
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHhccC-CEEEEEEEecCCHHHHHHHHHHcCCCCceEEeccccchhHHHhcC
Confidence            4689999999999999999999999999999874 6999999988553                          2 4578


Q ss_pred             CCCCceEEEE-eCCCcccCceeccCCCCHHHHHHHHHhcC
Q 013976          349 SDGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNA  387 (432)
Q Consensus       349 i~~~P~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  387 (432)
                      +.++|+++++ ++|..+.   .+.|..+.+.+++.+.+.+
T Consensus       109 i~~~P~~~lid~~G~i~~---~~~g~~~~~~~l~~l~~~l  145 (148)
T 3hcz_A          109 IYATPVLYVLDKNKVIIA---KRIGYENLDDFLVQYEKSL  145 (148)
T ss_dssp             CCSSCEEEEECTTCBEEE---ESCCGGGHHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCcEEE---ecCCHHHHHHHHHHHHHHh
Confidence            9999999999 6676553   6677777777777776543

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=98.95  E-value=3.7e-09  Score=81.00  Aligned_cols=97  Identities=8%  Similarity=0.116  Sum_probs=78.8

Q ss_pred             cCCCchhhhc--cCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEE
Q 013976          156 FTRENAPSVF--ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAY  232 (432)
Q Consensus       156 l~~~~~~~~~--~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i  232 (432)
                      -+.+++...+  ..+++.++.||++| ++|+.+.+.+.++++++. ++.|+.+|++.   ++.+++.||+.+.  |++++
T Consensus         7 ~~~~~~~~~~~~~~~~~v~v~f~a~wC~~C~~~~~~~~~~~~~~~-~~~~~~vd~~~---~~~~~~~~~v~~~--Pt~~~   80 (107)
T 1gh2_A            7 GSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP-QAVFLEVDVHQ---CQGTAATNNISAT--PTFQF   80 (107)
T ss_dssp             CSGGGHHHHHHHTTTSCEEEEEECSSCHHHHHHHHHHHHHHHHCT-TSEEEEEETTT---SHHHHHHTTCCSS--SEEEE
T ss_pred             cCHHHHHHHHHhCCCCEEEEEEECCCChhhHHHHHHHHHHHHHCC-CcEEEEEECcc---CHHHHHhcCCCcc--cEEEE
Confidence            3567888777  46778889999999 999999999999999994 59999999987   5689999999988  99988


Q ss_pred             EeCCCCceecCCCCCCHHHHHHHHHHHh
Q 013976          233 TGNDDAKKHILDGELTLDKIKTFGEDFL  260 (432)
Q Consensus       233 ~~~~~~~~y~~~~~~~~~~i~~fi~~~~  260 (432)
                      +.++. ....+.| .+.+.|.+|+++++
T Consensus        81 ~~~G~-~~~~~~G-~~~~~l~~~l~~~l  106 (107)
T 1gh2_A           81 FRNKV-RIDQYQG-ADAVGLEEKIKQHL  106 (107)
T ss_dssp             EETTE-EEEEEES-SCHHHHHHHHHHHH
T ss_pred             EECCe-EEEEEeC-CCHHHHHHHHHHhc
Confidence            85443 3344567 45566999998875

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=98.95  E-value=2.4e-09  Score=82.47  Aligned_cols=98  Identities=13%  Similarity=0.075  Sum_probs=82.0

Q ss_pred             eecCCCchhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEE
Q 013976          154 TIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAY  232 (432)
Q Consensus       154 ~~l~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i  232 (432)
                      ...+.+++......++++++.||++| +.|+.+.+.+.++++++.+ +.|+.+|++.   .+.+++.|++.+.  |++++
T Consensus        10 ~~~~~~~f~~~~~~~k~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~-~~~~~vd~~~---~~~l~~~~~v~~~--Pt~~~   83 (109)
T 3f3q_A           10 QFKTASEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQ-ADFYKLDVDE---LGDVAQKNEVSAM--PTLLL   83 (109)
T ss_dssp             ECCSHHHHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTT---CHHHHHHTTCCSS--SEEEE
T ss_pred             CCCCHHHHHHHHhcCCEEEEEEECCcCHhHHHHHHHHHHHHHHCCC-CEEEEEECCC---CHHHHHHcCCCcc--CEEEE
Confidence            34556777777788888899999999 9999999999999999987 9999999988   5689999999998  99998


Q ss_pred             EeCCCCceecCCCCCCHHHHHHHHHHH
Q 013976          233 TGNDDAKKHILDGELTLDKIKTFGEDF  259 (432)
Q Consensus       233 ~~~~~~~~y~~~~~~~~~~i~~fi~~~  259 (432)
                      +..+ .....+.|. +.+.|.++++++
T Consensus        84 ~~~G-~~~~~~~G~-~~~~l~~~i~~~  108 (109)
T 3f3q_A           84 FKNG-KEVAKVVGA-NPAAIKQAIAAN  108 (109)
T ss_dssp             EETT-EEEEEEESS-CHHHHHHHHHHH
T ss_pred             EECC-EEEEEEeCC-CHHHHHHHHHhh
Confidence            8743 334455675 789999999875

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=98.93  E-value=1.6e-09  Score=83.86  Aligned_cols=102  Identities=19%  Similarity=0.262  Sum_probs=85.9

Q ss_pred             CceeecCCCchhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcE
Q 013976          151 PLVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKV  229 (432)
Q Consensus       151 p~v~~l~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~  229 (432)
                      +....++.+++...+..++++++.||++| +.|+.+.+.+.+++.++.+ +.|+.+|++.   .+.+++.|++...  |+
T Consensus         9 ~~~~~~~~~~f~~~~~~~k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~-v~~~~vd~~~---~~~~~~~~~v~~~--Pt   82 (112)
T 1syr_A            9 MVKIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTK-MVFIKVDVDE---VSEVTEKENITSM--PT   82 (112)
T ss_dssp             CCEEECSHHHHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTT---THHHHHHTTCCSS--SE
T ss_pred             eEEEECCHHHHHHHHccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcCC-CEEEEEECCC---CHHHHHHcCCCcc--cE
Confidence            45677888889888888888889999999 9999999999999999986 9999999987   5689999999988  99


Q ss_pred             EEEEeCCCCceecCCCCCCHHHHHHHHHHHh
Q 013976          230 LAYTGNDDAKKHILDGELTLDKIKTFGEDFL  260 (432)
Q Consensus       230 i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~  260 (432)
                      ++++..+ .....+.|. +.+.|.+|+++++
T Consensus        83 ~~~~~~G-~~~~~~~G~-~~~~l~~~l~~~l  111 (112)
T 1syr_A           83 FKVYKNG-SSVDTLLGA-NDSALKQLIEKYA  111 (112)
T ss_dssp             EEEEETT-EEEEEEESC-CHHHHHHHHHTTC
T ss_pred             EEEEECC-cEEEEEeCC-CHHHHHHHHHHhh
Confidence            9888643 234456787 9999999998764

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=98.93  E-value=3.3e-09  Score=81.98  Aligned_cols=102  Identities=17%  Similarity=0.171  Sum_probs=80.8

Q ss_pred             eeecCC-CchhhhccC---CCcceEEEEEeC-cchhhhHHHHHHHHHhcc-CceEEEEEecCCcccccchhhhhCCCCCC
Q 013976          153 VTIFTR-ENAPSVFES---PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFK-GKLIFVYVQMDNEDVGKPVSEYFGITGEA  226 (432)
Q Consensus       153 v~~l~~-~~~~~~~~~---~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~-~~i~f~~vd~~~~~~~~~l~~~~~i~~~~  226 (432)
                      +.+++. +++...+..   +++.++.||++| ++|+.+.+.+.+++.++. ..+.|+.+|++.   .+.+++.||+.+. 
T Consensus         2 v~~i~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~vd~~~---~~~~~~~~~v~~~-   77 (112)
T 3d6i_A            2 VIEINDQEQFTYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADE---NSEISELFEISAV-   77 (112)
T ss_dssp             EEEECCHHHHHHHHTTTTTTCCEEEEEECCC--CHHHHHHHHHHHHHCGGGTTSEEEEEETTT---CHHHHHHTTCCSS-
T ss_pred             ccccCCHHHHHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEeccc---CHHHHHHcCCCcc-
Confidence            456776 778777765   677888899999 999999999999999963 459999999988   5689999999988 


Q ss_pred             CcEEEEEeCCCCceecCCCCCCHHHHHHHHHHHhc
Q 013976          227 PKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  261 (432)
Q Consensus       227 ~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  261 (432)
                       |+++++..+ .....+.|. +.+.|.++++++++
T Consensus        78 -Pt~~~~~~G-~~~~~~~G~-~~~~l~~~l~~~~~  109 (112)
T 3d6i_A           78 -PYFIIIHKG-TILKELSGA-DPKEYVSLLEDCKN  109 (112)
T ss_dssp             -SEEEEEETT-EEEEEECSC-CHHHHHHHHHHHHH
T ss_pred             -cEEEEEECC-EEEEEecCC-CHHHHHHHHHHHHh
Confidence             999888543 234456675 56679999998775

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=98.93  E-value=1.9e-09  Score=91.44  Aligned_cols=89  Identities=11%  Similarity=0.229  Sum_probs=71.3

Q ss_pred             CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCE------EEEEEeCCC-ccc--cc--------------------
Q 013976          296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSI------VIAKMDGTT-NEH--HR--------------------  346 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~------~~~~id~~~-~~~--~~--------------------  346 (432)
                      .++++||.||++||++|+.+.+.|.+++..+++. ++      .|+.|+++. +..  ..                    
T Consensus        58 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~-~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  136 (183)
T 3lwa_A           58 ENQVVILNAWGQWCAPCRSESDDLQIIHEELQAA-GNGDTPGGTVLGINVRDYSRDIAQDFVTDNGLDYPSIYDPPFMTA  136 (183)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHC-C---CCSEEEEEEECSCCCHHHHHHHHHHTTCCSCEEECTTCGGG
T ss_pred             CCCEEEEEEECCcCHhHHHHHHHHHHHHHHHHhc-CCCccCCcEEEEEECCCCCHHHHHHHHHHcCCCccEEECCcchHH
Confidence            4689999999999999999999999999999763 36      999999887 222  22                    


Q ss_pred             -----CCCCCCceEEEE-eCCCcccCceeccCCCCHHHHHHHHHhcCC
Q 013976          347 -----AKSDGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNAS  388 (432)
Q Consensus       347 -----~~i~~~P~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  388 (432)
                           +.+..+|+++++ ++|+.+.   .+.|..+.+.|.++|++.+.
T Consensus       137 ~~~~~~~v~~~P~~~lid~~G~i~~---~~~g~~~~~~l~~~l~~ll~  181 (183)
T 3lwa_A          137 ASLGGVPASVIPTTIVLDKQHRPAA---VFLREVTSKDVLDVALPLVD  181 (183)
T ss_dssp             GGTTTCCTTCCSEEEEECTTSCEEE---EECSCCCHHHHHHHHHHHHH
T ss_pred             HHhccCCCCCCCeEEEECCCCcEEE---EEcCCCCHHHHHHHHHHHHh
Confidence                 257899987777 6676553   67888999999999988753

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A

Probab=98.93  E-value=5.1e-09  Score=92.03  Aligned_cols=105  Identities=10%  Similarity=0.059  Sum_probs=87.5

Q ss_pred             CceeecCCCchhhhccCCCcceEEEEE--eCcchhhhHHHHHHHHHhcc--CceEEEEEecCC--cccccchhhhhCCC-
Q 013976          151 PLVTIFTRENAPSVFESPIKNQLLLFA--VSNDSEKLLPVFEEAAKSFK--GKLIFVYVQMDN--EDVGKPVSEYFGIT-  223 (432)
Q Consensus       151 p~v~~l~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~a~~~~--~~i~f~~vd~~~--~~~~~~l~~~~~i~-  223 (432)
                      ..|..++.++|..++..+.+++|.||+  +|..   +.|.|.++|..+.  +.+.|+.||+++  ...++.+|+.|+|+ 
T Consensus         5 ~~v~~Lt~~nF~~~i~~~~~vlV~FyA~~pWCg---l~P~~e~lA~~~~~~~~v~~akVDvd~~g~~~~~~l~~~~~V~~   81 (240)
T 2qc7_A            5 KGALPLDTVTFYKVIPKSKFVLVKFDTQYPYGE---KQDEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKLDK   81 (240)
T ss_dssp             TTCEECCTTHHHHHGGGCSEEEEEECCSSCCSH---HHHHHHHHHHHHTTCTTEEEEEECCCCSSSCCSHHHHHHTTCCG
T ss_pred             CCceECCHHHHHHHHcCCCCEEEEEeCCCCCCc---chHHHHHHHHHhcCCCCeEEEEEeCCcccchhhHHHHHHcCCCC
Confidence            457889999999988777788889999  8833   9999999999997  469999999654  11267899999999 


Q ss_pred             -CCCCcEEEEEeCCC-CceecCCCCCCHHHHHHHHHHHh
Q 013976          224 -GEAPKVLAYTGNDD-AKKHILDGELTLDKIKTFGEDFL  260 (432)
Q Consensus       224 -~~~~P~i~i~~~~~-~~~y~~~~~~~~~~i~~fi~~~~  260 (432)
                       ++  |++.++..+. .....|.|.++.+.|.+|+.+..
T Consensus        82 ~~~--PTl~~f~~G~~~~~~~y~G~~~~~~L~~fi~~~~  118 (240)
T 2qc7_A           82 ESY--PVFYLFRDGDFENPVPYTGAVKVGAIQRWLKGQG  118 (240)
T ss_dssp             GGC--SEEEEEETTCSSCCEECCSCSCHHHHHHHHHHTT
T ss_pred             CCC--CEEEEEeCCCcCcceeecCCCCHHHHHHHHHHhc
Confidence             77  9999997765 34667889999999999999874

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=98.92  E-value=2.3e-09  Score=82.73  Aligned_cols=102  Identities=9%  Similarity=0.140  Sum_probs=82.8

Q ss_pred             eeecCCCchhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEE
Q 013976          153 VTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLA  231 (432)
Q Consensus       153 v~~l~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~  231 (432)
                      +..++.+++ ..+..+++.++.||++| +.|+.+.+.+.+++..+. .+.|+.+|++.   .+.+++.||+.+.  |+++
T Consensus         5 ~~~~~~~~f-~~~~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~---~~~l~~~~~v~~~--Pt~~   77 (110)
T 2l6c_A            5 RDITTEAGM-AHFEGLSDAIVFFHKNLCPHCKNMEKVLDKFGARAP-QVAISSVDSEA---RPELMKELGFERV--PTLV   77 (110)
T ss_dssp             SBCGGGCSH-HHHTTCSEEEEEEECSSCSTHHHHHHHHHHHHTTCT-TSCEEEEEGGG---CHHHHHHTTCCSS--CEEE
T ss_pred             eecCCHHHH-HHHHcCCCEEEEEECCCCHhHHHHHHHHHHHHHHCC-CcEEEEEcCcC---CHHHHHHcCCccc--CEEE
Confidence            456777888 55566678888999999 999999999999999987 59999999987   5689999999988  9999


Q ss_pred             EEeCCCCceecCCCCCCHHHHHHHHHHHhcC
Q 013976          232 YTGNDDAKKHILDGELTLDKIKTFGEDFLEG  262 (432)
Q Consensus       232 i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g  262 (432)
                      ++.++ .....+.|..+.+.|.+++..++++
T Consensus        78 ~~~~G-~~v~~~~G~~~~~~l~~~~~~~~~~  107 (110)
T 2l6c_A           78 FIRDG-KVAKVFSGIMNPRELQALYASIHHH  107 (110)
T ss_dssp             EEESS-SEEEEEESCCCHHHHHHHHHTC---
T ss_pred             EEECC-EEEEEEcCCCCHHHHHHHHHHHhhh
Confidence            88544 3445667889999999999998653

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=98.92  E-value=3.8e-09  Score=86.65  Aligned_cols=90  Identities=17%  Similarity=0.268  Sum_probs=71.2

Q ss_pred             CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCcc------------------------c-ccCCCC
Q 013976          296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE------------------------H-HRAKSD  350 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~------------------------~-~~~~i~  350 (432)
                      .++++||.||++||++|+.+.+.+.+++..+.+. ++.++.++++.+.                        . ..+++.
T Consensus        27 ~gk~vll~f~~~~C~~C~~~~~~l~~~~~~~~~~-~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~  105 (154)
T 3kcm_A           27 KGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGK-PFRMLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKRVGKLYGTT  105 (154)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTS-SEEEEEEECCTTHHHHHHHHHHHHCCCCCEEECTTCHHHHHHTCC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccC-CeEEEEEEcCCcchHHHHHHHHHcCCCeeEEecCchHHHHHhCCC
Confidence            4689999999999999999999999999999873 6999999988751                        1 357999


Q ss_pred             CCceEEEE-eCCCcccCceeccCCC--CHHHHHHHHHhcCCC
Q 013976          351 GFPTILFF-PAGNKSFDPINVDVDR--TVVALYKFLKKNASI  389 (432)
Q Consensus       351 ~~P~i~~~-~~g~~~~~~~~y~g~~--~~~~l~~fi~~~~~~  389 (432)
                      ++|+++++ ++|+.+.   .+.|..  +.+.+.++|++....
T Consensus       106 ~~P~~~lid~~G~i~~---~~~g~~~~~~~~l~~~l~~l~~~  144 (154)
T 3kcm_A          106 GVPETFVIDRHGVILK---KVVGAMEWDHPEVIAFLNNELSK  144 (154)
T ss_dssp             SBCEEEEECTTSBEEE---EEESCCCTTSHHHHHHHHTC---
T ss_pred             CCCeEEEECCCCcEEE---EEcCCCccccHHHHHHHHHHHHH
Confidence            99987777 6666543   566754  778999999887643

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=98.92  E-value=1.4e-09  Score=87.84  Aligned_cols=104  Identities=8%  Similarity=0.068  Sum_probs=74.5

Q ss_pred             ceeecCCCchhhhccCCCcceEEEEEeC---cchhhhHHHHHHHHHhccCceE--EEEEecCCcccccchhhhhCCCCCC
Q 013976          152 LVTIFTRENAPSVFESPIKNQLLLFAVS---NDSEKLLPVFEEAAKSFKGKLI--FVYVQMDNEDVGKPVSEYFGITGEA  226 (432)
Q Consensus       152 ~v~~l~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~a~~~~~~i~--f~~vd~~~~~~~~~l~~~~~i~~~~  226 (432)
                      -+..++.++|+..+..+...+++|++.|   ++|+.+.+.|.+++++| +++.  |+.||+++   ++.+++.|||.+. 
T Consensus        18 ~~~~l~~~~f~~~i~~~~~~vv~f~~~~~~C~~C~~l~P~l~~la~~~-~~v~~~~~~Vd~d~---~~~la~~~~V~~i-   92 (142)
T 2es7_A           18 GWQPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREF-PQFDWQVAVADLEQ---SEAIGDRFNVRRF-   92 (142)
T ss_dssp             TCEECCCC--------CCSEEEEECCCSCC----CCHHHHHHHHHHTC-TTSCCEEEEECHHH---HHHHHHTTTCCSS-
T ss_pred             cCcccccccHHHHHHhCCCEEEEEECCCCCCccHHHHHHHHHHHHHHh-cccceeEEEEECCC---CHHHHHhcCCCcC-
Confidence            5678899999988876655556565655   68999999999999999 8888  99999987   5689999999998 


Q ss_pred             CcEEEEEeCCCCceecCCCCCCHHHHHHHHHHHhcC
Q 013976          227 PKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEG  262 (432)
Q Consensus       227 ~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g  262 (432)
                       |+++++.++ .....+.|..+.+.|.+|++.+++.
T Consensus        93 -PT~~~fk~G-~~v~~~~G~~~~~~l~~~i~~~l~~  126 (142)
T 2es7_A           93 -PATLVFTDG-KLRGALSGIHPWAELLTLMRSIVDT  126 (142)
T ss_dssp             -SEEEEESCC-----CEESCCCHHHHHHHHHHHHC-
T ss_pred             -CeEEEEeCC-EEEEEEeCCCCHHHHHHHHHHHhcc
Confidence             999998544 3445667889999999999998863

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=98.91  E-value=1.9e-09  Score=82.15  Aligned_cols=96  Identities=11%  Similarity=0.214  Sum_probs=79.1

Q ss_pred             CCCchhhhcc--CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEE
Q 013976          157 TRENAPSVFE--SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYT  233 (432)
Q Consensus       157 ~~~~~~~~~~--~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~  233 (432)
                      +.+++...+.  .+++.++.||++| +.|+.+.+.+.+++.++.+ +.|+.+|++.   ++.+++.|++.+.  |+++++
T Consensus         7 ~~~~~~~~l~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~vd~~~---~~~~~~~~~v~~~--Pt~~~~   80 (105)
T 3m9j_A            7 SKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN-VIFLEVDVDD---CQDVASESEVKSM--PTFQFF   80 (105)
T ss_dssp             SHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHSTT-SEEEEEETTT---CHHHHHHTTCCBS--SEEEEE
T ss_pred             CHHHHHHHHHhcCCCeEEEEEECCCChhhHHHHHHHHHHHHHccC-eEEEEEEhhh---hHHHHHHcCCCcC--cEEEEE
Confidence            3455556555  5677888899999 9999999999999999988 9999999988   5689999999988  999998


Q ss_pred             eCCCCceecCCCCCCHHHHHHHHHHHh
Q 013976          234 GNDDAKKHILDGELTLDKIKTFGEDFL  260 (432)
Q Consensus       234 ~~~~~~~y~~~~~~~~~~i~~fi~~~~  260 (432)
                      .+++ ....+.|. +.+.|.+|+++++
T Consensus        81 ~~g~-~~~~~~g~-~~~~l~~~l~~~l  105 (105)
T 3m9j_A           81 KKGQ-KVGEFSGA-NKEKLEATINELV  105 (105)
T ss_dssp             ETTE-EEEEEESS-CHHHHHHHHHHHC
T ss_pred             ECCe-EEEEEeCC-CHHHHHHHHHHhC
Confidence            5443 34456787 9999999998763

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}

Probab=98.91  E-value=1.2e-09  Score=90.76  Aligned_cols=75  Identities=19%  Similarity=0.338  Sum_probs=59.6

Q ss_pred             ccchhhhhcCCCcEEEEEeCCCChhhhhhHHH-H--HHHHHHhcCCCCEEEEEEeCCCccc--ccC--------CCCCCc
Q 013976          287 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPT-Y--NKLAKHLRGVDSIVIAKMDGTTNEH--HRA--------KSDGFP  353 (432)
Q Consensus       287 ~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~-~--~~la~~~~~~~~~~~~~id~~~~~~--~~~--------~i~~~P  353 (432)
                      +.|.... ..++++||.||++||++|+.|.+. |  .+++..+.+  ++.++.+|++++..  ..+        ++.++|
T Consensus        30 ea~~~A~-~~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~~--~fv~ikVD~de~~~l~~~y~~~~q~~~gv~g~P  106 (173)
T 3ira_A           30 EAFEKAR-KENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNE--AFVSIKVDREERPDIDNIYMTVCQIILGRGGWP  106 (173)
T ss_dssp             HHHHHHH-HHTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHHH--HCEEEEEETTTCHHHHHHHHHHHHHHHSCCCSS
T ss_pred             HHHHHHH-HhCCCEEEecccchhHhhccccccccCCHHHHHHHHh--cCceeeeCCcccCcHHHHHHHHHHHHcCCCCCc
Confidence            4555533 567999999999999999999983 4  567777766  69999999998765  345        899999


Q ss_pred             eEEEEe-CCCcc
Q 013976          354 TILFFP-AGNKS  364 (432)
Q Consensus       354 ~i~~~~-~g~~~  364 (432)
                      +++++. +|+.+
T Consensus       107 t~v~l~~dG~~v  118 (173)
T 3ira_A          107 LNIIMTPGKKPF  118 (173)
T ss_dssp             EEEEECTTSCEE
T ss_pred             ceeeECCCCCce
Confidence            999995 66554

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=98.91  E-value=3.6e-09  Score=80.43  Aligned_cols=99  Identities=12%  Similarity=0.195  Sum_probs=79.6

Q ss_pred             eecCC-Cchhhhcc--CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcE
Q 013976          154 TIFTR-ENAPSVFE--SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKV  229 (432)
Q Consensus       154 ~~l~~-~~~~~~~~--~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~  229 (432)
                      .+++. +++...+.  .+++.++.||++| +.|+.+.+.+.+++.++. .+.|+.+|++.   ++.+++.||+...  |+
T Consensus         2 ~~i~~~~~~~~~l~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~v~~~~---~~~~~~~~~v~~~--Pt   75 (104)
T 2vim_A            2 RVLATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP-EVEFAKVDVDQ---NEEAAAKYSVTAM--PT   75 (104)
T ss_dssp             EECCSHHHHHHHHHTTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTT---CHHHHHHTTCCSS--SE
T ss_pred             eecCCHHHHHHHHHhcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHCC-CCEEEEEeccC---CHHHHHHcCCccc--cE
Confidence            34555 66766665  5667788899999 999999999999999997 59999999987   5689999999988  99


Q ss_pred             EEEEeCCCCceecCCCCCCHHHHHHHHHHHh
Q 013976          230 LAYTGNDDAKKHILDGELTLDKIKTFGEDFL  260 (432)
Q Consensus       230 i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~  260 (432)
                      ++++.++. ....+.| .+.+.+.+|+++++
T Consensus        76 ~~~~~~g~-~~~~~~G-~~~~~l~~~l~~~l  104 (104)
T 2vim_A           76 FVFIKDGK-EVDRFSG-ANETKLRETITRHK  104 (104)
T ss_dssp             EEEEETTE-EEEEEES-SCHHHHHHHHHHHC
T ss_pred             EEEEeCCc-EEEEEeC-CCHHHHHHHHHhhC
Confidence            98886442 3445567 68999999998763

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=98.91  E-value=1e-09  Score=91.71  Aligned_cols=99  Identities=21%  Similarity=0.314  Sum_probs=71.2

Q ss_pred             eEEE--ecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCc----------------
Q 013976          281 VKIV--VGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN----------------  342 (432)
Q Consensus       281 v~~l--~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~----------------  342 (432)
                      +..+  .+..+.......++++||.||++||++|+.+.|.+.++++.     ++.++.|+++..                
T Consensus        33 l~~~~~~g~~~~~~~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~-----~v~vv~v~~~~~~~~~~~~~~~~~~~~~  107 (168)
T 2b1k_A           33 LESLDNPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ-----GIRVVGMNYKDDRQKAISWLKELGNPYA  107 (168)
T ss_dssp             EEESSSTTCEEEGGGGCCSSCEEEEEECTTCHHHHHHHHHHHHHHHT-----TCCEEEEEESCCHHHHHHHHHHHCCCCS
T ss_pred             eecccCCCcEeehhHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHC-----CCEEEEEECCCChHHHHHHHHHcCCCCc
Confidence            4444  45555433334678999999999999999999999999875     366666664321                


Q ss_pred             -------cc--ccCCCCCCceEEEE-eCCCcccCceeccCCCCHHHHHHHHHhcC
Q 013976          343 -------EH--HRAKSDGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNA  387 (432)
Q Consensus       343 -------~~--~~~~i~~~P~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  387 (432)
                             ..  ..+++.++|+.+++ ++|..+.   .+.|..+.+.+.++|++.+
T Consensus       108 ~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~---~~~g~~~~~~l~~~l~~~l  159 (168)
T 2b1k_A          108 LSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRY---RHAGDLNPRVWEEEIKPLW  159 (168)
T ss_dssp             EEEEETTCHHHHHHTCCSSSEEEEECTTSBEEE---EEESCCCHHHHHHTTHHHH
T ss_pred             eeeECcchHHHHHcCccccCEEEEECCCCeEEE---EEeCCCCHHHHHHHHHHHH
Confidence                   11  35799999966666 6666543   6778889999998888765

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=98.91  E-value=3.2e-09  Score=83.45  Aligned_cols=102  Identities=17%  Similarity=0.213  Sum_probs=84.5

Q ss_pred             ceeecCC-CchhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCc-eEEEEEecCCcccccchhhhhCCCCCCCc
Q 013976          152 LVTIFTR-ENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNEDVGKPVSEYFGITGEAPK  228 (432)
Q Consensus       152 ~v~~l~~-~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~-i~f~~vd~~~~~~~~~l~~~~~i~~~~~P  228 (432)
                      .+..++. +++...+..++++++.||++| +.|+.+.+.+.+++..+.++ +.|+.+|++.   ++.+++.|++...  |
T Consensus        16 ~~~~i~~~~~f~~~l~~~k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~~~v~~~~vd~d~---~~~~~~~~~v~~~--P   90 (121)
T 2j23_A           16 SVQVISSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDE---QSQIAQEVGIRAM--P   90 (121)
T ss_dssp             CEEECCSHHHHHHHHSSSSCEEEEEECTTCSTHHHHHHHHHHHHTSTHHHHSEEEEEETTT---CHHHHHHHTCCSS--S
T ss_pred             ceEEcCCHHHHHHHHcCCCEEEEEEECCCCHhHHHHHHHHHHHHHHCcCCcEEEEEEECcC---CHHHHHHcCCCcc--c
Confidence            3555555 777777777778889999999 99999999999999999876 9999999998   5689999999988  9


Q ss_pred             EEEEEeCCCCceecCCCCCCHHHHHHHHHHHh
Q 013976          229 VLAYTGNDDAKKHILDGELTLDKIKTFGEDFL  260 (432)
Q Consensus       229 ~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~  260 (432)
                      +++++.++ .....+.|. +.+.|.+|++.++
T Consensus        91 t~~~~~~G-~~~~~~~G~-~~~~l~~~l~~~l  120 (121)
T 2j23_A           91 TFVFFKNG-QKIDTVVGA-DPSKLQAAITQHS  120 (121)
T ss_dssp             EEEEEETT-EEEEEEESS-CHHHHHHHHHHHT
T ss_pred             EEEEEECC-eEEeeEcCC-CHHHHHHHHHHhh
Confidence            99888643 234456777 9999999999875

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=98.91  E-value=4.6e-09  Score=86.06  Aligned_cols=88  Identities=19%  Similarity=0.279  Sum_probs=69.3

Q ss_pred             CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCc-------------------------cc--ccCC
Q 013976          296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN-------------------------EH--HRAK  348 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-------------------------~~--~~~~  348 (432)
                      .+++++|.||++||++|+.+.|.+.+++..+.+. ++.++.|+++..                         ..  ..++
T Consensus        28 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~-~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  106 (152)
T 2lrn_A           28 KGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDK-GFTIYGVSTDRREEDWKKAIEEDKSYWNQVLLQKDDVKDVLESYC  106 (152)
T ss_dssp             TTSEEEEEEECTTCTTHHHHHHHHHHHHHHHTTT-TEEEEEEECCSCHHHHHHHHHHHTCCSEEEEECHHHHHHHHHHTT
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHhccC-CeEEEEEEccCCHHHHHHHHHHhCCCCeEEecccchhHHHHHHhC
Confidence            4689999999999999999999999999999873 699999998863                         12  4789


Q ss_pred             CCCCceEEEE-eCCCcccCceeccCCCCHHHHHHHHHhcCCCC
Q 013976          349 SDGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNASIP  390 (432)
Q Consensus       349 i~~~P~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~  390 (432)
                      +.++|+++++ ++|..+.   .+   .+.+.+.++|++.....
T Consensus       107 v~~~P~~~lid~~G~i~~---~~---~~~~~l~~~l~~l~~~~  143 (152)
T 2lrn_A          107 IVGFPHIILVDPEGKIVA---KE---LRGDDLYNTVEKFVNGA  143 (152)
T ss_dssp             CCSSCEEEEECTTSEEEE---EC---CCTTHHHHHHHHHHTSS
T ss_pred             CCcCCeEEEECCCCeEEE---ee---CCHHHHHHHHHHHHhhc
Confidence            9999999999 6665542   22   34567777777765543

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=98.91  E-value=5e-09  Score=86.50  Aligned_cols=89  Identities=19%  Similarity=0.371  Sum_probs=71.1

Q ss_pred             CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCC-------------------ccc--ccCCCCCCce
Q 013976          296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT-------------------NEH--HRAKSDGFPT  354 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~-------------------~~~--~~~~i~~~P~  354 (432)
                      .++++||.||++||++|+.+.+.+.+++..+.+. ++.++.++++.                   +..  ..+++.++|+
T Consensus        40 ~gk~vll~F~~~~C~~C~~~~~~l~~~~~~~~~~-~~~~v~v~~d~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~  118 (158)
T 3hdc_A           40 RGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKG-DLVVLAVNVEKRFPEKYRRAPVSFNFLSDATGQVQQRYGANRLPD  118 (158)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHSSTT-SEEEEEEECSSSCCGGGGGCCCSCEEEECTTSHHHHHTTCCSSSE
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHHcccC-CeEEEEEeCCHHHHHHHHHcCCCceEEECchHHHHHHhCCCCcce
Confidence            4689999999999999999999999999999853 79999999887                   112  5789999999


Q ss_pred             EEEE-eCCCcccCceeccC--CCCHHHHHHHHHhcCC
Q 013976          355 ILFF-PAGNKSFDPINVDV--DRTVVALYKFLKKNAS  388 (432)
Q Consensus       355 i~~~-~~g~~~~~~~~y~g--~~~~~~l~~fi~~~~~  388 (432)
                      ++++ ++|..+.   .+.|  ..+..++++.+.+...
T Consensus       119 ~~lid~~G~i~~---~~~G~~~~~~~~~~~~~~~~~~  152 (158)
T 3hdc_A          119 TFIVDRKGIIRQ---RVTGGIEWDAPKVVSYLKSLEG  152 (158)
T ss_dssp             EEEECTTSBEEE---EEESCCCTTSHHHHHHHHTTC-
T ss_pred             EEEEcCCCCEEE---EEeCCCccchHHHHHHHHhhcc
Confidence            8888 6665543   6677  4566888888776653

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=98.90  E-value=4.2e-09  Score=82.15  Aligned_cols=99  Identities=18%  Similarity=0.308  Sum_probs=81.8

Q ss_pred             eeecCC-Cchhhhcc--CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCc
Q 013976          153 VTIFTR-ENAPSVFE--SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPK  228 (432)
Q Consensus       153 v~~l~~-~~~~~~~~--~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P  228 (432)
                      +.+++. +++...+.  .++++++.||++| +.|+.+.+.+.+++.++  .+.|+.+|++.   ++.+++.||+.+.  |
T Consensus        15 v~~l~~~~~~~~~l~~~~~~~~vv~f~a~wC~~C~~~~~~~~~~~~~~--~~~~~~vd~~~---~~~~~~~~~v~~~--P   87 (117)
T 2xc2_A           15 LIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY--DAIFVKVDVDK---LEETARKYNISAM--P   87 (117)
T ss_dssp             EEECCSTTHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHTTS--SSEEEEEETTT---SHHHHHHTTCCSS--S
T ss_pred             eEEeCCHHHHHHHHHhCCCCEEEEEEECCCCHhHHHHhHHHHHHHHHc--CcEEEEEECCc---cHHHHHHcCCCcc--c
Confidence            677777 88877766  6777888899999 99999999999999999  69999999987   5689999999988  9


Q ss_pred             EEEEEeCCCCceecCCCCCCHHHHHHHHHHHh
Q 013976          229 VLAYTGNDDAKKHILDGELTLDKIKTFGEDFL  260 (432)
Q Consensus       229 ~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~  260 (432)
                      +++++.++. ....+.| .+.+.|.+|+++++
T Consensus        88 t~~~~~~G~-~~~~~~G-~~~~~l~~~l~~~l  117 (117)
T 2xc2_A           88 TFIAIKNGE-KVGDVVG-ASIAKVEDMIKKFI  117 (117)
T ss_dssp             EEEEEETTE-EEEEEES-SCHHHHHHHHHHHC
T ss_pred             eEEEEeCCc-EEEEEeC-CCHHHHHHHHHHhC
Confidence            998885442 3344567 68999999998763

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=98.90  E-value=6e-09  Score=86.63  Aligned_cols=85  Identities=16%  Similarity=0.255  Sum_probs=69.6

Q ss_pred             CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCC------------------Ccc--------------
Q 013976          296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT------------------TNE--------------  343 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~------------------~~~--------------  343 (432)
                      .++++||.||++||++|+.+.+.+.++...+.   ++.|+.|+++                  .+.              
T Consensus        36 ~gk~~lv~F~~~~C~~C~~~~~~l~~l~~~~~---~v~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (165)
T 3ha9_A           36 GGDVVILWFMAAWCPSCVYMADLLDRLTEKYR---EISVIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFIANYGDPS  112 (165)
T ss_dssp             CSSEEEEEEECTTCTTHHHHHHHHHHHHHHCT---TEEEEEEECCSHHHHHHHTCCSTTSCCCCCHHHHHHHHHHHSCTT
T ss_pred             CCCEEEEEEECCCCcchhhhHHHHHHHHHHcC---CcEEEEEEecccccccccccccccCCCCCCHHHHHHHHHHcCCCC
Confidence            46899999999999999999999999999998   5999999987                  221              


Q ss_pred             ---------c-ccCCCCCCceEEEE-eCCCcccCceeccCCC-CHHHHHHHHHhcCC
Q 013976          344 ---------H-HRAKSDGFPTILFF-PAGNKSFDPINVDVDR-TVVALYKFLKKNAS  388 (432)
Q Consensus       344 ---------~-~~~~i~~~P~i~~~-~~g~~~~~~~~y~g~~-~~~~l~~fi~~~~~  388 (432)
                               . ..+++.++|+++++ ++|+.+     +.|.. +.+.|.++|++..+
T Consensus       113 ~~~~~d~~~~~~~~~v~~~P~~~lid~~G~i~-----~~g~~~~~~~l~~~l~~l~~  164 (165)
T 3ha9_A          113 WIMVMDDGSLVEKFNVRSIDYIVIMDKSSNVL-----YAGTTPSLGELESVIKSVQG  164 (165)
T ss_dssp             SEEEECCSHHHHHTTCCSSSEEEEEETTCCEE-----EEEESCCHHHHHHHHHHC--
T ss_pred             eeEEeChHHHHHHhCCCCceEEEEEcCCCcEE-----EeCCCCCHHHHHHHHHHHhc
Confidence                     1 46899999999999 555443     37877 99999999988753

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=98.87  E-value=1.2e-08  Score=80.32  Aligned_cols=105  Identities=15%  Similarity=0.185  Sum_probs=85.1

Q ss_pred             CCCceeecCCCchhhhcc--CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCC
Q 013976          149 KLPLVTIFTRENAPSVFE--SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGE  225 (432)
Q Consensus       149 ~~p~v~~l~~~~~~~~~~--~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~  225 (432)
                      ....+..++.+++...+.  .++++++.||++| ++|+.+.+.+.++++++.+ +.|+.+|++..  ++.+++.||+.+.
T Consensus        16 ~~~~v~~l~~~~~~~~~~~~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~-~~~~~vd~~~~--~~~~~~~~~v~~~   92 (124)
T 1faa_A           16 IVGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLD-VIFLKLDCNQE--NKTLAKELGIRVV   92 (124)
T ss_dssp             TTTSEEEECTTTHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEECSST--THHHHHHHCCSSS
T ss_pred             cCCceEEecchhHHHHHHhcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHCCC-CEEEEEecCcc--hHHHHHHcCCCee
Confidence            345688899999987765  5677888899999 9999999999999999986 99999999842  5688999999988


Q ss_pred             CCcEEEEEeCCCCceecCCCCCCHHHHHHHHHHHh
Q 013976          226 APKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFL  260 (432)
Q Consensus       226 ~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~  260 (432)
                        |+++++.++. ....+.|.. .+.+.++++.++
T Consensus        93 --Pt~~~~~~G~-~~~~~~G~~-~~~l~~~i~~~~  123 (124)
T 1faa_A           93 --PTFKILKENS-VVGEVTGAK-YDKLLEAIQAAR  123 (124)
T ss_dssp             --SEEEEEETTE-EEEEEESSC-HHHHHHHHHHHT
T ss_pred             --eEEEEEeCCc-EEEEEcCCC-HHHHHHHHHHhh
Confidence              9988875443 334456654 899999998865

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24

Probab=98.86  E-value=5.9e-09  Score=84.87  Aligned_cols=96  Identities=14%  Similarity=0.161  Sum_probs=72.1

Q ss_pred             ccchhhh---hcCCCcEEEEEeCCCChhhhhhHHHH---HHHHHHhcCCCCEEEEEEeCCCccc----ccCCCCCCceEE
Q 013976          287 NNFDEIV---LDESKDVLLEIYAPWCGHCQAFEPTY---NKLAKHLRGVDSIVIAKMDGTTNEH----HRAKSDGFPTIL  356 (432)
Q Consensus       287 ~~~~~~~---~~~~~~~lv~f~~~~c~~c~~~~~~~---~~la~~~~~~~~~~~~~id~~~~~~----~~~~i~~~P~i~  356 (432)
                      .+|++.+   ...+++++|.||++||..|+.|....   .+++..++.  ++.+..+|.+..+.    ..|++.++|+++
T Consensus        29 ~~~~~Al~~Ak~~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~~--~fv~v~~d~~~~~~~~l~~~y~v~~~P~~~  106 (153)
T 2dlx_A           29 GSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIRE--HFIFWQVYHDSEEGQRYIQFYKLGDFPYVS  106 (153)
T ss_dssp             SCHHHHHHHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHH--TEEEEEEESSSHHHHHHHHHHTCCSSSEEE
T ss_pred             cCHHHHHHHHHHcCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHHc--CeEEEEEecCCHhHHHHHHHcCCCCCCEEE
Confidence            4666655   23479999999999999999997654   456666655  69999999965443    478999999999


Q ss_pred             EEeC--CCcccCceeccCCCCHHHHHHHHHhcCC
Q 013976          357 FFPA--GNKSFDPINVDVDRTVVALYKFLKKNAS  388 (432)
Q Consensus       357 ~~~~--g~~~~~~~~y~g~~~~~~l~~fi~~~~~  388 (432)
                      ++..  |..+.   .+.| .+.+.++++|.+...
T Consensus       107 fld~~~G~~l~---~~~g-~~~~~fl~~L~~~l~  136 (153)
T 2dlx_A          107 ILDPRTGQKLV---EWHQ-LDVSSFLDQVTGFLG  136 (153)
T ss_dssp             EECTTTCCCCE---EESS-CCHHHHHHHHHHHHH
T ss_pred             EEeCCCCcEee---ecCC-CCHHHHHHHHHHHHH
Confidence            9944  44542   3455 899999888877764

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=98.85  E-value=4.5e-09  Score=85.81  Aligned_cols=101  Identities=12%  Similarity=0.074  Sum_probs=83.4

Q ss_pred             CCCchhhhc--cCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEE
Q 013976          157 TRENAPSVF--ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYT  233 (432)
Q Consensus       157 ~~~~~~~~~--~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~  233 (432)
                      +.+++...+  ..++++++.||++| ++|+.+.+.+.++++++.+++.|+.+|+++   .+.+++.|+|...  |+++++
T Consensus        10 ~~~~~~~~i~~~~~k~vlv~F~a~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~---~~~l~~~~~v~~~--Pt~~~~   84 (149)
T 3gix_A           10 SKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVDVDQ---TAVYTQYFDISYI--PSTVFF   84 (149)
T ss_dssp             SHHHHHHHHHHCCSSEEEEEEECTTSHHHHHHHHHHHHHHTTTTTTEEEEEEETTT---CCHHHHHTTCCSS--SEEEEE
T ss_pred             CHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHccCceEEEEEECCc---CHHHHHHcCCCcc--CeEEEE
Confidence            455666655  45778889999999 999999999999999999999999999987   5689999999988  999877


Q ss_pred             eCCCCce---------ecCCC-CCCHHHHHHHHHHHhcCC
Q 013976          234 GNDDAKK---------HILDG-ELTLDKIKTFGEDFLEGK  263 (432)
Q Consensus       234 ~~~~~~~---------y~~~~-~~~~~~i~~fi~~~~~g~  263 (432)
                      ..+. ..         ..+.| ..+.+.|.++++.++.|.
T Consensus        85 ~~G~-~v~~~~g~~~~~~~~G~~~~~~~l~~~l~~~~~~~  123 (149)
T 3gix_A           85 FNGQ-HMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIYRGA  123 (149)
T ss_dssp             ETTE-EEEEECSSSCCSCEESCCSSHHHHHHHHHHHHHHH
T ss_pred             ECCe-EEEeecCCCCCCeEeeecCCHHHHHHHHHHHHHHh
Confidence            6543 23         35667 789999999999987543

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=98.85  E-value=6.4e-09  Score=85.27  Aligned_cols=85  Identities=13%  Similarity=0.081  Sum_probs=68.7

Q ss_pred             CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCcc------------------------c-ccCCCC
Q 013976          296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE------------------------H-HRAKSD  350 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~------------------------~-~~~~i~  350 (432)
                      .++++||.||++||++|....|.+.+++..+++. ++.++.|+++...                        . ..|++.
T Consensus        34 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~-~~~vv~i~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~  112 (152)
T 2lrt_A           34 KGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQ-GFEIYQISLDGDEHFWKTSADNLPWVCVRDANGAYSSYISLYNVT  112 (152)
T ss_dssp             GGSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGG-TEEEEEEECSCCHHHHHHHHTTCSSEEEECSSGGGCHHHHHHTCC
T ss_pred             CCCEEEEEEEcCCChhhHHHHHHHHHHHHHhccC-CeEEEEEEccCCHHHHHHHHhCCCceEEECCCCcchHHHHHcCcc
Confidence            3579999999999999999999999999999874 6999999988654                        1 356899


Q ss_pred             CCceEEEE-eCCCcccCceeccCCCCHHHHHHHHH
Q 013976          351 GFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLK  384 (432)
Q Consensus       351 ~~P~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~  384 (432)
                      ++|+++++ ++|..+.   .+.|..+.+....-+.
T Consensus       113 ~~P~~~lid~~G~i~~---~~~g~~~~e~~~~~~~  144 (152)
T 2lrt_A          113 NLPSVFLVNRNNELSA---RGENIKDLDEAIKKLL  144 (152)
T ss_dssp             SCSEEEEEETTTEEEE---ETTTCSCHHHHHHHHH
T ss_pred             cCceEEEECCCCeEEE---ecCCHHHHHHHHHHHH
Confidence            99999999 5666554   6778888766655544

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}

Probab=98.84  E-value=6.1e-09  Score=97.06  Aligned_cols=89  Identities=11%  Similarity=0.153  Sum_probs=73.9

Q ss_pred             CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCc----------------------------cc-cc
Q 013976          296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN----------------------------EH-HR  346 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~----------------------------~~-~~  346 (432)
                      .++++||.||++||.+|+.+.|.+.+++..+++. ++.++.|+++..                            .. ..
T Consensus        81 ~GK~vLl~F~atwC~~C~~~~p~L~~l~~~~~~~-~v~vi~Vs~d~~~~~d~~~~~~~~~~~~~l~fpv~~D~~~~l~~~  159 (352)
T 2hyx_A           81 RGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDS-GLAVIGVHTPEYAFEKVPGNVAKGAANLGISYPIALDNNYATWTN  159 (352)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGG-TEEEEEEECCSSGGGGCHHHHHHHHHHHTCCSCEEECTTSHHHHH
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHhhcC-CeEEEEEECCcccccCCHHHHHHHHHHcCCCccEEeCCcHHHHHH
Confidence            3689999999999999999999999999999863 699999987531                            11 46


Q ss_pred             CCCCCCceEEEE-eCCCcccCceeccCCCCHHHHHHHHHhcCC
Q 013976          347 AKSDGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNAS  388 (432)
Q Consensus       347 ~~i~~~P~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  388 (432)
                      +++..+|+++++ ++|+.+.   .+.|..+.+.|.++|++.+.
T Consensus       160 ygV~~~Pt~~lID~~G~Iv~---~~~G~~~~~~l~~~I~~lL~  199 (352)
T 2hyx_A          160 YRNRYWPAEYLIDATGTVRH---IKFGEGDYNVTETLVRQLLN  199 (352)
T ss_dssp             TTCCEESEEEEECTTSBEEE---EEESBCCHHHHHHHHHHHHH
T ss_pred             cCCCccCEEEEEeCCCeEEE---EEcCCCCHHHHHHHHHHHHh
Confidence            899999999999 6676554   67888899999999988764

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=98.82  E-value=3.4e-09  Score=87.15  Aligned_cols=85  Identities=18%  Similarity=0.293  Sum_probs=67.1

Q ss_pred             CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCcc-----------------------c--ccCCCC
Q 013976          296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE-----------------------H--HRAKSD  350 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~-----------------------~--~~~~i~  350 (432)
                      .+++++|.||++||++|+.+.+.+.+++..    .++.++.++++.+.                       .  ..+++.
T Consensus        41 ~gk~~ll~f~~~~C~~C~~~~~~l~~l~~~----~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~  116 (156)
T 1kng_A           41 KGKVSLVNVWASWCVPCHDEAPLLTELGKD----KRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVY  116 (156)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHTTC----TTSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCC
T ss_pred             CCCEEEEEEEcccCHhHHHHHHHHHHHHhc----CCeEEEEEECCCCHHHHHHHHHHcCCCCceeeeCchhHHHHhcCcC
Confidence            368999999999999999999999988765    25888888865321                       1  358999


Q ss_pred             CCceEEEE-eCCCcccCceeccCCCCHHHHHHHHHhcC
Q 013976          351 GFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNA  387 (432)
Q Consensus       351 ~~P~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  387 (432)
                      ++|+++++ ++|..+.   .+.|..+.+.|.++|++.+
T Consensus       117 ~~P~~~~id~~G~i~~---~~~g~~~~~~l~~~l~~~l  151 (156)
T 1kng_A          117 GVPETFVVGREGTIVY---KLVGPITPDNLRSVLLPQM  151 (156)
T ss_dssp             SSCEEEEECTTSBEEE---EEESCCCHHHHHHTHHHHH
T ss_pred             ccCeEEEEcCCCCEEE---EEeCCCCHHHHHHHHHHHH
Confidence            99977777 6776543   6788889999999988765

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=98.81  E-value=1.4e-08  Score=84.55  Aligned_cols=65  Identities=20%  Similarity=0.407  Sum_probs=55.9

Q ss_pred             CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCcc------------------------c--ccCCC
Q 013976          296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE------------------------H--HRAKS  349 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~------------------------~--~~~~i  349 (432)
                      .++++||+||++||++|+.+.|.+.++++.+++..++.++.|+++...                        .  ..|++
T Consensus        47 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v  126 (165)
T 3s9f_A           47 SGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEEDDFNAYYAKMPWLSIPFANRNIVEALTKKYSV  126 (165)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEECCcChhHHHHHHHHHHHHHHhccCCCeEEEEEecCCCHHHHHHHHHhCCCcccccCchhHHHHHHHHcCC
Confidence            468999999999999999999999999999986447888888887652                        1  46899


Q ss_pred             CCCceEEEEeC
Q 013976          350 DGFPTILFFPA  360 (432)
Q Consensus       350 ~~~P~i~~~~~  360 (432)
                      .++|+++++..
T Consensus       127 ~~~Pt~~lid~  137 (165)
T 3s9f_A          127 ESIPTLIGLNA  137 (165)
T ss_dssp             CSSSEEEEEET
T ss_pred             CCCCEEEEEeC
Confidence            99999999974

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=98.81  E-value=5.9e-09  Score=89.37  Aligned_cols=88  Identities=8%  Similarity=0.096  Sum_probs=70.2

Q ss_pred             CcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCc-----------------------------cc--cc
Q 013976          298 KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN-----------------------------EH--HR  346 (432)
Q Consensus       298 ~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-----------------------------~~--~~  346 (432)
                      .++||.||++||++|+...+.+.+++..+.+. ++.++.|+++..                             ..  ..
T Consensus        47 ~~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~-~v~vv~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  125 (196)
T 2ywi_A           47 AATVIMFICNHCPFVKHVQHELVRLANDYMPK-GVSFVAINSNDAEQYPEDSPENMKKVAEELGYPFPYLYDETQEVAKA  125 (196)
T ss_dssp             SEEEEEECCSSCHHHHHHHHHHHHHHHHHGGG-TCEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSCHHHHH
T ss_pred             CeEEEEEeCCCCccHHHHHHHHHHHHHHHHhC-CcEEEEEECCccccccccCHHHHHHHHHHcCCCceEEECCchHHHHH
Confidence            35999999999999999999999999999863 588999988531                             11  46


Q ss_pred             CCCCCCceEEEE-eCCCcccCcee---------ccCCCCHHHHHHHHHhcCCC
Q 013976          347 AKSDGFPTILFF-PAGNKSFDPIN---------VDVDRTVVALYKFLKKNASI  389 (432)
Q Consensus       347 ~~i~~~P~i~~~-~~g~~~~~~~~---------y~g~~~~~~l~~fi~~~~~~  389 (432)
                      +++..+|+++++ ++|..+.   .         +.|..+.+.|.++|++.+..
T Consensus       126 ~~v~~~P~~~lid~~G~i~~---~~~~~~~~~~~~g~~~~~~l~~~i~~ll~~  175 (196)
T 2ywi_A          126 YDAACTPDFYIFDRDLKCVY---RGQLDDSRPNNGIPVTGESIRAALDALLEG  175 (196)
T ss_dssp             HTCCEESEEEEEETTCBEEE---EECSSSCCTTTCCCCCCHHHHHHHHHHHHT
T ss_pred             hCCCCCCeEEEEcCCCeEEE---ccccCcccccccCccCHHHHHHHHHHHHcC
Confidence            789999999999 5565432   2         45677889999999988754

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=98.80  E-value=8.9e-09  Score=81.23  Aligned_cols=101  Identities=18%  Similarity=0.182  Sum_probs=80.3

Q ss_pred             ceeec-CCCchhhhcc----CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCC
Q 013976          152 LVTIF-TRENAPSVFE----SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGE  225 (432)
Q Consensus       152 ~v~~l-~~~~~~~~~~----~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~  225 (432)
                      .+.++ +.+++...+.    .++++++.||++| +.|+.+.+.+.+++.++. .+.|+.+|++.   .+.+++.|++...
T Consensus        17 ~v~~l~~~~~~~~~l~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~-~v~~~~vd~d~---~~~l~~~~~v~~~   92 (124)
T 1xfl_A           17 QVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLP-NVLFLKVDTDE---LKSVASDWAIQAM   92 (124)
T ss_dssp             CCEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS-SEEEEEEETTT---SHHHHHHTTCCSS
T ss_pred             cEEEeCCHHHHHHHHHHhhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC-CcEEEEEECcc---CHHHHHHcCCCcc
Confidence            34455 5566666554    3667888899999 999999999999999997 59999999987   5689999999988


Q ss_pred             CCcEEEEEeCCCCceecCCCCCCHHHHHHHHHHHh
Q 013976          226 APKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFL  260 (432)
Q Consensus       226 ~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~  260 (432)
                        |+++++.++. ....+.| .+.+.|.+++++++
T Consensus        93 --Pt~~~~~~G~-~~~~~~G-~~~~~l~~~l~~~l  123 (124)
T 1xfl_A           93 --PTFMFLKEGK-ILDKVVG-AKKDELQSTIAKHL  123 (124)
T ss_dssp             --SEEEEEETTE-EEEEEES-CCHHHHHHHHHHHC
T ss_pred             --CEEEEEECCE-EEEEEeC-CCHHHHHHHHHHhc
Confidence              9998885432 3344567 68999999998875

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=98.80  E-value=1.2e-08  Score=82.62  Aligned_cols=83  Identities=17%  Similarity=0.197  Sum_probs=62.7

Q ss_pred             eEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCcc-----------------
Q 013976          281 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE-----------------  343 (432)
Q Consensus       281 v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~-----------------  343 (432)
                      +..++++.+.-.- -.++++||.||++||++|+.+.|.+.+++..+++..++.++.|+++...                 
T Consensus        13 l~~~~g~~~~l~~-~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~   91 (144)
T 1i5g_A           13 VLKGAAADIALPS-LAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPF   91 (144)
T ss_dssp             EEETTEEEEEGGG-GTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCT
T ss_pred             EEcCCCCEecHHH-cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCcccccc
Confidence            3444444433221 2468999999999999999999999999999985347999999988632                 


Q ss_pred             --------c-ccCCCCCCceEEEEe--CCCcc
Q 013976          344 --------H-HRAKSDGFPTILFFP--AGNKS  364 (432)
Q Consensus       344 --------~-~~~~i~~~P~i~~~~--~g~~~  364 (432)
                              . ..+++.++|+++++.  +|..+
T Consensus        92 ~~~d~~~~~~~~~~v~~~P~~~lid~~~G~i~  123 (144)
T 1i5g_A           92 EDRKGMEFLTTGFDVKSIPTLVGVEADSGNII  123 (144)
T ss_dssp             TCHHHHHHHHHHTTCCSSSEEEEEETTTCCEE
T ss_pred             CchHHHHHHHHHcCCCCCCEEEEEECCCCcEE
Confidence                    1 468999999999996  56543

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=98.80  E-value=4.6e-09  Score=84.26  Aligned_cols=102  Identities=13%  Similarity=0.165  Sum_probs=84.1

Q ss_pred             ceeecCCCchhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEec---------CCcccccchhhhhC
Q 013976          152 LVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQM---------DNEDVGKPVSEYFG  221 (432)
Q Consensus       152 ~v~~l~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~---------~~~~~~~~l~~~~~  221 (432)
                      .+..++.+++...+..  ++++.||++| ++|+.+.+.+.++++++.  +.|+.+|+         +.   ++.+++.||
T Consensus        17 ~v~~l~~~~~~~~~~~--~vlv~F~a~wC~~C~~~~p~l~~l~~~~~--v~~~~vd~~~~~~~~~~d~---~~~l~~~~~   89 (135)
T 3emx_A           17 RLIYITPEEFRQLLQG--DAILAVYSKTCPHCHRDWPQLIQASKEVD--VPIVMFIWGSLIGERELSA---ARLEMNKAG   89 (135)
T ss_dssp             EEEECCHHHHHHHHTS--SEEEEEEETTCHHHHHHHHHHHHHHTTCC--SCEEEEEECTTCCHHHHHH---HHHHHHHHT
T ss_pred             ceeecCHHHHHHHhCC--cEEEEEECCcCHhhhHhChhHHHHHHHCC--CEEEEEECCCchhhhhhhh---hHHHHHHcC
Confidence            4667788888877665  7888899999 999999999999999997  89999999         44   568899999


Q ss_pred             CCCCCCcEEEEEeCCCCceecCCCCCCHHHHHHHHHHHhcCC
Q 013976          222 ITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGK  263 (432)
Q Consensus       222 i~~~~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g~  263 (432)
                      +.+.  |+++++..+ .....+.|..+.+.+..+++..+++.
T Consensus        90 v~~~--Pt~~~~~~G-~~v~~~~G~~~~~~~~~~i~~~~~~~  128 (135)
T 3emx_A           90 VEGT--PTLVFYKEG-RIVDKLVGATPWSLKVEKAREIYGGE  128 (135)
T ss_dssp             CCSS--SEEEEEETT-EEEEEEESCCCHHHHHHHHHHHC---
T ss_pred             Ccee--CeEEEEcCC-EEEEEEeCCCCHHHHHHHHHHHhCCC
Confidence            9998  999998744 34456789999999999999988653

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=98.80  E-value=5e-09  Score=81.35  Aligned_cols=98  Identities=11%  Similarity=0.134  Sum_probs=78.7

Q ss_pred             eeecCC-CchhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEE
Q 013976          153 VTIFTR-ENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVL  230 (432)
Q Consensus       153 v~~l~~-~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i  230 (432)
                      +.+++. +.+..+...+++.++.||++| +.|+.+.+.+.+++.++.+ +.|+.+|++.   ++.+++.|++...  |++
T Consensus        14 ~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~-v~~~~vd~~~---~~~l~~~~~v~~~--Pt~   87 (114)
T 2oe3_A           14 ITKLTNLTEFRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPD-VRFVKCDVDE---SPDIAKECEVTAM--PTF   87 (114)
T ss_dssp             SCBCCSHHHHHHHHHHCSEEEEEEECTTCHHHHHTHHHHHHHHHHCTT-SEEEEEETTT---CHHHHHHTTCCSB--SEE
T ss_pred             eeecCCHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-CEEEEEECCC---CHHHHHHCCCCcc--cEE
Confidence            444444 445566677778889999999 9999999999999999988 9999999987   5689999999988  999


Q ss_pred             EEEeCCCCceecCCCCCCHHHHHHHHHH
Q 013976          231 AYTGNDDAKKHILDGELTLDKIKTFGED  258 (432)
Q Consensus       231 ~i~~~~~~~~y~~~~~~~~~~i~~fi~~  258 (432)
                      +++..+ .....+.|.. .+.|.+|+++
T Consensus        88 ~~~~~G-~~~~~~~G~~-~~~l~~~l~~  113 (114)
T 2oe3_A           88 VLGKDG-QLIGKIIGAN-PTALEKGIKD  113 (114)
T ss_dssp             EEEETT-EEEEEEESSC-HHHHHHHHHT
T ss_pred             EEEeCC-eEEEEEeCCC-HHHHHHHHHh
Confidence            887543 2334567766 8999999875

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=98.80  E-value=9.2e-09  Score=83.20  Aligned_cols=101  Identities=7%  Similarity=0.003  Sum_probs=79.6

Q ss_pred             CCchhhhc-c-CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEe
Q 013976          158 RENAPSVF-E-SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTG  234 (432)
Q Consensus       158 ~~~~~~~~-~-~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~  234 (432)
                      .+++...+ . .++++++.||++| ++|+.+.+.+.++++++.+++.|+.+|+++   ++.+++.|++.+.  |+++++.
T Consensus        11 ~~~~~~~v~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~---~~~~~~~~~i~~~--Pt~~~~~   85 (142)
T 1qgv_A           11 GWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITE---VPDFNKMYELYDP--CTVMFFF   85 (142)
T ss_dssp             HHHHHHHHHTCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTT---CCTTTTSSCSCSS--CEEEEEE
T ss_pred             HHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEcccc---CHHHHHHcCCCCC--CEEEEEE
Confidence            45555433 3 4677888999999 999999999999999998889999999998   5689999999988  9998886


Q ss_pred             CCCCce--------ecCCCCCC-HHHHHHHHHHHhcCC
Q 013976          235 NDDAKK--------HILDGELT-LDKIKTFGEDFLEGK  263 (432)
Q Consensus       235 ~~~~~~--------y~~~~~~~-~~~i~~fi~~~~~g~  263 (432)
                      +++...        ....|..+ .+.+.++++.++.|.
T Consensus        86 ~G~~v~~~~g~~~~~~~~g~~~~~~~l~~~i~~~~~~~  123 (142)
T 1qgv_A           86 RNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYRGA  123 (142)
T ss_dssp             TTEEEEEECC------CCSCCSCHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEecCCCCcceeeeecCcHHHHHHHHHHHHHHH
Confidence            553221        13455554 899999999988753

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.79  E-value=1.2e-09  Score=87.86  Aligned_cols=102  Identities=13%  Similarity=0.126  Sum_probs=80.5

Q ss_pred             CceeecCCCchhhhccCCC--cceEEEEEeC-cchhhhHHHHHHHHHhccC-ceEEEEEecCCcccccchhhhhCCC---
Q 013976          151 PLVTIFTRENAPSVFESPI--KNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNEDVGKPVSEYFGIT---  223 (432)
Q Consensus       151 p~v~~l~~~~~~~~~~~~~--~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~-~i~f~~vd~~~~~~~~~l~~~~~i~---  223 (432)
                      ..+..++.+++...+..+.  ++++.||++| ++|+.+.+.|.+++.++.+ ++.|+.+|++.   ++.+++.|++.   
T Consensus         7 ~~v~~l~~~~f~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~---~~~~~~~~~v~~~~   83 (137)
T 2dj0_A            7 GYIKYFNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGR---YTDVSTRYKVSTSP   83 (137)
T ss_dssp             SCCEECCTTHHHHHHHHSTTSCEEEEECCTTCSTTTTTHHHHHHHHHHHCSSSCEEEECCTTT---CHHHHHHTTCCCCS
T ss_pred             ceEEEccHhhHHHHHhcCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEeCcc---CHHHHHHccCcccC
Confidence            3578899999988765554  6688899999 9999999999999999986 79999999988   56899999998   


Q ss_pred             ---CCCCcEEEEEeCCCCceecCCCCCCHHHHHHHHHH
Q 013976          224 ---GEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGED  258 (432)
Q Consensus       224 ---~~~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~  258 (432)
                         ..  |+++++..+. ....+.|..+.+.|.+|+.+
T Consensus        84 ~~~~~--Pt~~~~~~G~-~~~~~~G~~~~~~l~~~l~~  118 (137)
T 2dj0_A           84 LTKQL--PTLILFQGGK-EAMRRPQIDKKGRAVSWTFS  118 (137)
T ss_dssp             SSSCS--SEEEEESSSS-EEEEESCBCSSSCBCCCCCC
T ss_pred             CcCCC--CEEEEEECCE-EEEEecCcCchHHHHHHHhc
Confidence               66  9998885443 34445676666655555543

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=98.78  E-value=1.9e-08  Score=81.76  Aligned_cols=68  Identities=16%  Similarity=0.321  Sum_probs=57.1

Q ss_pred             CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCcc----------------------c----ccCCC
Q 013976          296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE----------------------H----HRAKS  349 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~----------------------~----~~~~i  349 (432)
                      .++++||.||++||++|+.+.|.+.+++..+++..++.++.|+++...                      .    ..+++
T Consensus        27 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  106 (146)
T 1o8x_A           27 AGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNV  106 (146)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEEccCCHHHHHHHHHHHHHHHHhhhcCCeEEEEEeCCCCHHHHHHHHHHCCceeeccchhhHHHHHHHHhCC
Confidence            468999999999999999999999999999984337899999888632                      1    46899


Q ss_pred             CCCceEEEEe--CCCc
Q 013976          350 DGFPTILFFP--AGNK  363 (432)
Q Consensus       350 ~~~P~i~~~~--~g~~  363 (432)
                      .++|+++++.  +|..
T Consensus       107 ~~~Pt~~lid~~~G~i  122 (146)
T 1o8x_A          107 ESIPTLIGVDADSGDV  122 (146)
T ss_dssp             CSSSEEEEEETTTCCE
T ss_pred             CCCCEEEEEECCCCeE
Confidence            9999999997  5654

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=98.25  E-value=7.8e-10  Score=84.40  Aligned_cols=101  Identities=23%  Similarity=0.243  Sum_probs=82.7

Q ss_pred             eeecCCCchhhh-ccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEE
Q 013976          153 VTIFTRENAPSV-FESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVL  230 (432)
Q Consensus       153 v~~l~~~~~~~~-~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i  230 (432)
                      +..++.+++... ...+++.+++||++| +.|+.+.+.+.+++.++.+++.|+.+|++.   +..+++.||+...  |++
T Consensus         3 v~~l~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~v~~~--Pt~   77 (106)
T 2yj7_A            3 VIEVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDE---NPNTAAQYGIRSI--PTL   77 (106)
Confidence            456777887754 456677888899999 999999999999999999889999999987   5588999999987  999


Q ss_pred             EEEeCCCCceecCCCCCCHHHHHHHHHHH
Q 013976          231 AYTGNDDAKKHILDGELTLDKIKTFGEDF  259 (432)
Q Consensus       231 ~i~~~~~~~~y~~~~~~~~~~i~~fi~~~  259 (432)
                      +++.++ .....+.|..+.+.+.+|+++.
T Consensus        78 ~~~~~g-~~~~~~~g~~~~~~l~~~l~~~  105 (106)
T 2yj7_A           78 LLFKNG-QVVDRLVGAQPKEALKERIDKH  105 (106)
Confidence            888433 3445667888899999998764

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=98.75  E-value=4.4e-08  Score=71.30  Aligned_cols=81  Identities=15%  Similarity=0.108  Sum_probs=69.4

Q ss_pred             cceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCceecCCCCCC
Q 013976          170 KNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELT  248 (432)
Q Consensus       170 ~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~~~  248 (432)
                      ..+++|+++| +.|+.+.+.+++++.++.+++.|+.+|+++   ++.+++.||+.+.  |++++  +  ++. .+.|..+
T Consensus         4 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~---~~~~~~~~~v~~~--Pt~~~--~--G~~-~~~G~~~   73 (85)
T 1fo5_A            4 VKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVME---NPQKAMEYGIMAV--PTIVI--N--GDV-EFIGAPT   73 (85)
T ss_dssp             EEEEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSS---SCCTTTSTTTCCS--SEEEE--T--TEE-ECCSSSS
T ss_pred             eEEEEEeCCCCCchHHHHHHHHHHHHHcCCceEEEEEECCC---CHHHHHHCCCccc--CEEEE--C--CEE-eeecCCC
Confidence            4577889999 999999999999999999889999999987   5588999999988  99977  2  233 6788889


Q ss_pred             HHHHHHHHHHHh
Q 013976          249 LDKIKTFGEDFL  260 (432)
Q Consensus       249 ~~~i~~fi~~~~  260 (432)
                      .+.+.+++++.+
T Consensus        74 ~~~l~~~l~~~l   85 (85)
T 1fo5_A           74 KEALVEAIKKRL   85 (85)
T ss_dssp             SHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhC
Confidence            999999998753

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=98.74  E-value=2.1e-08  Score=81.13  Aligned_cols=68  Identities=21%  Similarity=0.411  Sum_probs=56.9

Q ss_pred             CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCcc----------------------c----ccCCC
Q 013976          296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE----------------------H----HRAKS  349 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~----------------------~----~~~~i  349 (432)
                      .++++||.||++||++|+.+.|.+.++++.+++..++.++.|+++...                      .    ..+++
T Consensus        27 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  106 (144)
T 1o73_A           27 VGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGV  106 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHTC
T ss_pred             CCCEEEEEEECcCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCceEeeccchhHHHHHHHHcCC
Confidence            468999999999999999999999999999984347899999888642                      1    35799


Q ss_pred             CCCceEEEEe--CCCc
Q 013976          350 DGFPTILFFP--AGNK  363 (432)
Q Consensus       350 ~~~P~i~~~~--~g~~  363 (432)
                      .++|+++++.  +|..
T Consensus       107 ~~~Pt~~lid~~~G~i  122 (144)
T 1o73_A          107 ESIPTLITINADTGAI  122 (144)
T ss_dssp             CSSSEEEEEETTTCCE
T ss_pred             CCCCEEEEEECCCCeE
Confidence            9999999998  5544

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=98.74  E-value=2e-08  Score=78.20  Aligned_cols=102  Identities=22%  Similarity=0.230  Sum_probs=81.9

Q ss_pred             ceeec-CCCchhhhccC----CCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCC
Q 013976          152 LVTIF-TRENAPSVFES----PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGE  225 (432)
Q Consensus       152 ~v~~l-~~~~~~~~~~~----~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~  225 (432)
                      .+..+ +.+++...+..    +++.++.||++| +.|+.+.+.+.+++.++. .+.|+.+|++.   ++.+++.|++...
T Consensus         7 ~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~v~~~~---~~~~~~~~~v~~~   82 (118)
T 2vm1_A            7 AVIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFP-GAIFLKVDVDE---LKDVAEAYNVEAM   82 (118)
T ss_dssp             CEEECCSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTT---SHHHHHHTTCCSB
T ss_pred             ceEEecCHHHHHHHHHhcccCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC-CcEEEEEEccc---CHHHHHHcCCCcC
Confidence            34555 45677766554    667888899999 999999999999999998 59999999987   5688999999988


Q ss_pred             CCcEEEEEeCCCCceecCCCCCCHHHHHHHHHHHhc
Q 013976          226 APKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  261 (432)
Q Consensus       226 ~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  261 (432)
                        |+++++.++. ....+.| .+.+.|.+++.++++
T Consensus        83 --Pt~~~~~~g~-~~~~~~g-~~~~~l~~~l~~~~~  114 (118)
T 2vm1_A           83 --PTFLFIKDGE-KVDSVVG-GRKDDIHTKIVALMG  114 (118)
T ss_dssp             --SEEEEEETTE-EEEEEES-CCHHHHHHHHHHHHC
T ss_pred             --cEEEEEeCCe-EEEEecC-CCHHHHHHHHHHHhc
Confidence              9998885443 3344567 689999999999875

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=98.74  E-value=1.9e-08  Score=79.96  Aligned_cols=106  Identities=13%  Similarity=0.135  Sum_probs=85.2

Q ss_pred             eecCCCchhhhc----cCCCcceEEEEEeC-cchhhhHHHH---HHHHHhccCceEEEEEecCCcccccchhhhhCCCCC
Q 013976          154 TIFTRENAPSVF----ESPIKNQLLLFAVS-NDSEKLLPVF---EEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGE  225 (432)
Q Consensus       154 ~~l~~~~~~~~~----~~~~~~~i~~~~~~-~~~~~~~~~~---~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~  225 (432)
                      ..++..++...+    ..++++++.||++| +.|+.+.+.+   ..++..+...+.++.+|++... ...+++.||+.+.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-~~~~~~~~~v~~~   87 (130)
T 2kuc_A            9 IAFRELSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGE-GVELRKKYGVHAY   87 (130)
T ss_dssp             CCCBCCCHHHHHHHHHHHSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHHHHSEEEEECSSSTT-HHHHHHHTTCCSS
T ss_pred             CCcccCCHHHHHHHHHhcCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHhcCeEEEEEecCCcc-hHHHHHHcCCCCC
Confidence            345667776654    35667888899999 9999999998   7788877778999999998533 5688999999988


Q ss_pred             CCcEEEEEeCCCCceecCCCCCCHHHHHHHHHHHhcC
Q 013976          226 APKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEG  262 (432)
Q Consensus       226 ~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g  262 (432)
                        |++++++.++...+.+.|..+.+.|.+|+++.+.+
T Consensus        88 --Pt~~~~d~~G~~~~~~~G~~~~~~l~~~l~~~~~~  122 (130)
T 2kuc_A           88 --PTLLFINSSGEVVYRLVGAEDAPELLKKVKLGVES  122 (130)
T ss_dssp             --CEEEEECTTSCEEEEEESCCCHHHHHHHHHHHHSC
T ss_pred             --CEEEEECCCCcEEEEecCCCCHHHHHHHHHHHHHh
Confidence              99999965554556678889999999999998764

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=98.74  E-value=1.3e-08  Score=78.56  Aligned_cols=101  Identities=20%  Similarity=0.215  Sum_probs=80.0

Q ss_pred             eeec-CCCchhhhccC----CCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCC
Q 013976          153 VTIF-TRENAPSVFES----PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEA  226 (432)
Q Consensus       153 v~~l-~~~~~~~~~~~----~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~  226 (432)
                      +..+ +.+++...+..    +++.++.||++| +.|+.+.+.+.+++..+. .+.|+.+|++.   .+.+++.||+... 
T Consensus         6 v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~v~~~~---~~~~~~~~~v~~~-   80 (113)
T 1ti3_A            6 VIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP-NVTFLKVDVDE---LKAVAEEWNVEAM-   80 (113)
T ss_dssp             EEEECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS-SEEEEEEETTT---CHHHHHHHHCSST-
T ss_pred             eeEeccHHHHHHHHHHhhhcCCeEEEEEECCCCHHHHHHHHHHHHHHHhCC-CcEEEEEEccc---cHHHHHhCCCCcc-
Confidence            3344 55666665543    667788899999 999999999999999997 59999999987   5689999999988 


Q ss_pred             CcEEEEEeCCCCceecCCCCCCHHHHHHHHHHHhc
Q 013976          227 PKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  261 (432)
Q Consensus       227 ~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  261 (432)
                       |+++++.++. ....+.| .+.+.|.++++++++
T Consensus        81 -Pt~~~~~~G~-~~~~~~g-~~~~~l~~~l~~~~~  112 (113)
T 1ti3_A           81 -PTFIFLKDGK-LVDKTVG-ADKDGLPTLVAKHAT  112 (113)
T ss_dssp             -TEEEEEETTE-EEEEEEC-CCTTHHHHHHHHHHH
T ss_pred             -cEEEEEeCCE-EEEEEec-CCHHHHHHHHHHhhc
Confidence             9998885432 3344567 688999999998874

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=98.74  E-value=1.8e-08  Score=81.18  Aligned_cols=101  Identities=15%  Similarity=0.176  Sum_probs=81.2

Q ss_pred             ecCCCchhhhcc----CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcE
Q 013976          155 IFTRENAPSVFE----SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKV  229 (432)
Q Consensus       155 ~l~~~~~~~~~~----~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~  229 (432)
                      ..+.+++...+.    .++++++.||++| +.|+.+.+.+.+++.++. .+.|+.+|++.   ++.+++.||+.+.  |+
T Consensus        29 i~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~-~v~~~~v~~~~---~~~~~~~~~v~~~--Pt  102 (139)
T 3d22_A           29 ITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYP-SLMFLVIDVDE---LSDFSASWEIKAT--PT  102 (139)
T ss_dssp             ECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTT---SHHHHHHTTCCEE--SE
T ss_pred             eCCHHHHHHHHHHHhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC-CCEEEEEeCcc---cHHHHHHcCCCcc--cE
Confidence            334567766542    4667888999999 999999999999999995 49999999988   5689999999988  99


Q ss_pred             EEEEeCCCCceecCCCCCCHHHHHHHHHHHhcCC
Q 013976          230 LAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGK  263 (432)
Q Consensus       230 i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g~  263 (432)
                      ++++.++ .....+.|. +.+.|.++++.++++.
T Consensus       103 ~~~~~~G-~~~~~~~G~-~~~~l~~~l~~~~~~~  134 (139)
T 3d22_A          103 FFFLRDG-QQVDKLVGA-NKPELHKKITAILDSL  134 (139)
T ss_dssp             EEEEETT-EEEEEEESC-CHHHHHHHHHHHHHTS
T ss_pred             EEEEcCC-eEEEEEeCC-CHHHHHHHHHHHhccC
Confidence            9888443 334456676 8999999999998753

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=98.73  E-value=3.9e-08  Score=83.65  Aligned_cols=94  Identities=9%  Similarity=0.041  Sum_probs=70.1

Q ss_pred             CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCc-----------------------------cc--
Q 013976          296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN-----------------------------EH--  344 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-----------------------------~~--  344 (432)
                      .++++||.||++||.+|+...+.+.+++..+.+.  +.++.|+++..                             ..  
T Consensus        32 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~--~~~v~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~  109 (188)
T 2cvb_A           32 HEPLLAVVFMCNHCPYVKGSIGELVALAERYRGK--VAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVA  109 (188)
T ss_dssp             CSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTT--EEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHHH
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHhhcC--eEEEEEEcCccccccccCHHHHHHHHHHhCCCceEEECCcchHH
Confidence            3589999999999999999999999999999873  99999998431                             11  


Q ss_pred             ccCCCCCCceEEEE-eCCCcccCcee-----ccCCCCHHHHHHHHHhcCCCCC
Q 013976          345 HRAKSDGFPTILFF-PAGNKSFDPIN-----VDVDRTVVALYKFLKKNASIPF  391 (432)
Q Consensus       345 ~~~~i~~~P~i~~~-~~g~~~~~~~~-----y~g~~~~~~l~~fi~~~~~~~~  391 (432)
                      ..|++.++|+++++ ++|..+..-..     +.|..+.+.|.+.|++.+....
T Consensus       110 ~~~~v~~~P~~~lid~~G~i~~~g~~~~~~~~~g~~~~~~l~~~i~~ll~~~~  162 (188)
T 2cvb_A          110 KAYRALRTPEVFLFDERRLLRYHGRVNDNPKDPSKVQSHDLEAAIEALLRGEE  162 (188)
T ss_dssp             HHTTCCEESEEEEECTTCBEEEEECSSSCTTCGGGCCCCHHHHHHHHHHTTCC
T ss_pred             HHcCCCCCCeEEEECCCCcEEEEEecCCccccccccCHHHHHHHHHHHHcCCC
Confidence            46899999999999 55544310000     1233467889999998876443

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=98.73  E-value=6.5e-08  Score=78.93  Aligned_cols=85  Identities=12%  Similarity=0.195  Sum_probs=68.2

Q ss_pred             CCCcEEEEEeCCCChh--hhhhHHHHHHHHHHh-cCCCCEEEEEEeCCCcc-----------------------c----c
Q 013976          296 ESKDVLLEIYAPWCGH--CQAFEPTYNKLAKHL-RGVDSIVIAKMDGTTNE-----------------------H----H  345 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~--c~~~~~~~~~la~~~-~~~~~~~~~~id~~~~~-----------------------~----~  345 (432)
                      .++++||.||++||++  |+...|.+.++...+ ++ .++.++.|+++...                       .    .
T Consensus        32 ~gk~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~-~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  110 (150)
T 3fw2_A           32 KQKSLLINFWASWNDSISQKQSNSELREIYKKYKKN-KYIGMLGISLDVDKQQWKDAIKRDTLDWEQVCDFGGLNSEVAK  110 (150)
T ss_dssp             TTSEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTC-SSEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHH
T ss_pred             CCCEEEEEEEeCCCCchHHHHHHHHHHHHHHHhccC-CCeEEEEEEcCCCHHHHHHHHHHhCCCceEEEcCcccchHHHH
Confidence            4689999999999999  999999999999999 54 36999999988653                       1    4


Q ss_pred             cCCCCCCceEEEE-eCCCcccCceeccCCCCHHHHHHHHHhcC
Q 013976          346 RAKSDGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNA  387 (432)
Q Consensus       346 ~~~i~~~P~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  387 (432)
                      .|++.++|+++++ ++|..+     +.. .+.+.+.+.|++.+
T Consensus       111 ~~~v~~~P~~~lid~~G~i~-----~~~-~~~~~l~~~l~~ll  147 (150)
T 3fw2_A          111 QYSIYKIPANILLSSDGKIL-----AKN-LRGEELKKKIENIV  147 (150)
T ss_dssp             HTTCCSSSEEEEECTTSBEE-----EES-CCHHHHHHHHHHHH
T ss_pred             HcCCCccCeEEEECCCCEEE-----Ecc-CCHHHHHHHHHHHH
Confidence            6899999999999 666543     222 37888888887654

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=98.71  E-value=7.2e-09  Score=80.95  Aligned_cols=103  Identities=11%  Similarity=0.127  Sum_probs=79.5

Q ss_pred             ceeecCCCchhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCc-ccccchhhhhCCCCCCCcE
Q 013976          152 LVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNE-DVGKPVSEYFGITGEAPKV  229 (432)
Q Consensus       152 ~v~~l~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~-~~~~~l~~~~~i~~~~~P~  229 (432)
                      .+..++.+++...+..+.++++.||++| ++|+.+.+.+.+++.++...+.++-++.... +..+.+++.||+.+.  |+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~--Pt   90 (118)
T 1zma_A           13 DLEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGIPTV--PG   90 (118)
T ss_dssp             TSEECCHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCCEEEETTCGGGHHHHHHHHHHHTCCSS--CE
T ss_pred             hhhcCCHHHHHHHHhCCCeEEEEEECCCCccHHHHHHHHHHHHHhcCCeEEEEECCCcCcHHHHHHHHHHcCCCCC--Ce
Confidence            4667788888887777888889999999 9999999999999999887666553332210 113467899999988  99


Q ss_pred             EEEEeCCCCceecCCCCCCHHHHHHHHH
Q 013976          230 LAYTGNDDAKKHILDGELTLDKIKTFGE  257 (432)
Q Consensus       230 i~i~~~~~~~~y~~~~~~~~~~i~~fi~  257 (432)
                      ++++.++. ....+.|..+.+.|.+|+.
T Consensus        91 ~~~~~~G~-~~~~~~G~~~~~~l~~~l~  117 (118)
T 1zma_A           91 FVHITDGQ-INVRCDSSMSAQEIKDFAG  117 (118)
T ss_dssp             EEEEETTE-EEEECCTTCCHHHHHHHHT
T ss_pred             EEEEECCE-EEEEecCCCCHHHHHHHhh
Confidence            98886443 3456789999999999985

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=98.70  E-value=4.1e-08  Score=79.40  Aligned_cols=83  Identities=13%  Similarity=0.095  Sum_probs=64.7

Q ss_pred             CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCcc-------------------------c---ccC
Q 013976          296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE-------------------------H---HRA  347 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~-------------------------~---~~~  347 (432)
                      .++++||.||++||++|....|.+.++.+.|++. ++.++.|+++.+.                         .   ..|
T Consensus        31 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~-~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  109 (143)
T 4fo5_A           31 LGRYTLLNFWAAYDAESRARNVQLANEVNKFGPD-KIAMCSISMDEKESIFTETVKIDKLDLSTQFHEGLGKESELYKKY  109 (143)
T ss_dssp             SCCEEEEEEECTTCHHHHHHHHHHHHHHTTSCTT-TEEEEEEECCSCHHHHHHHHHHHTCCGGGEEECTTGGGSHHHHHT
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCcC-CEEEEEEEccCCHHHHHHHHHHhCCCCceeeecccccchHHHHHc
Confidence            4589999999999999999999999999999864 7999999887432                         0   347


Q ss_pred             CCCCCceEEEEe-CCCcccCceeccCCCCHHHHHHHHHh
Q 013976          348 KSDGFPTILFFP-AGNKSFDPINVDVDRTVVALYKFLKK  385 (432)
Q Consensus       348 ~i~~~P~i~~~~-~g~~~~~~~~y~g~~~~~~l~~fi~~  385 (432)
                      ++.++|+.+++. +|+.+     +. ..+.+.+.++|++
T Consensus       110 ~v~~~P~~~lid~~G~i~-----~~-~~~~~~l~~~l~~  142 (143)
T 4fo5_A          110 DLRKGFKNFLINDEGVII-----AA-NVTPEKLTEILKA  142 (143)
T ss_dssp             TGGGCCCEEEECTTSBEE-----EE-SCCHHHHHHHHTC
T ss_pred             CCCCCCcEEEECCCCEEE-----Ec-cCCHHHHHHHHHh
Confidence            899999999995 55432     33 2457778877754

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=98.68  E-value=6.2e-08  Score=84.50  Aligned_cols=89  Identities=10%  Similarity=0.122  Sum_probs=69.9

Q ss_pred             CC-cEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCC-----------------------------ccc--
Q 013976          297 SK-DVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT-----------------------------NEH--  344 (432)
Q Consensus       297 ~~-~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~-----------------------------~~~--  344 (432)
                      ++ .+||.||++||++|....|.+.+++..|++. ++.|+.|+++.                             +..  
T Consensus        58 gk~~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~-~v~vv~Vs~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~  136 (218)
T 3u5r_E           58 DSPALLVAFISNRCPFVVLIREALAKFAGDYAGQ-GLAVVAINSNDAQAFPEETLERVGAEVKAYGYGFPYLKDASQSVA  136 (218)
T ss_dssp             TCSEEEEEECCSSCHHHHTTHHHHHHHHHHHTTT-TEEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECTTCHHH
T ss_pred             CCCeEEEEEECCCCccHHHHHHHHHHHHHHHHhC-CcEEEEEECCcccccccCCHHHHHHHHHHhCCCccEEECCccHHH
Confidence            45 5999999999999999999999999999874 59999999852                             111  


Q ss_pred             ccCCCCCCceEEEE-eCCCcccCceeccC-----------CCCHHHHHHHHHhcCCCCC
Q 013976          345 HRAKSDGFPTILFF-PAGNKSFDPINVDV-----------DRTVVALYKFLKKNASIPF  391 (432)
Q Consensus       345 ~~~~i~~~P~i~~~-~~g~~~~~~~~y~g-----------~~~~~~l~~fi~~~~~~~~  391 (432)
                      ..|++..+|+++++ ++|+.     .|.|           ..+.+.|.+.|++.++...
T Consensus       137 ~~~~v~~~P~~~liD~~G~i-----~~~g~~d~~~~~~~~~~~~~~l~~~i~~ll~~~~  190 (218)
T 3u5r_E          137 KAYGAACTPDFFLYDRERRL-----VYHGQFDDARPGNGKDVTGADLRAAVDAVLKGKD  190 (218)
T ss_dssp             HHHTCCEESEEEEECTTCBE-----EEEECSSSCCTTSCCCCCCHHHHHHHHHHHTTCC
T ss_pred             HHcCCCCCCeEEEECCCCcE-----EEeccccccccccccccCHHHHHHHHHHHHcCCC
Confidence            46799999999999 55543     3443           3457899999999876543

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=98.68  E-value=2.2e-08  Score=78.21  Aligned_cols=103  Identities=18%  Similarity=0.258  Sum_probs=79.0

Q ss_pred             ceeec--CCCchh-hhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCC
Q 013976          152 LVTIF--TRENAP-SVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAP  227 (432)
Q Consensus       152 ~v~~l--~~~~~~-~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~  227 (432)
                      .+..+  +.+++. .+...++++++.||++| +.|+.+.+.+.+++.++ +.+.|+.+|++.   .+.+++.|++...  
T Consensus         4 ~v~~~~g~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~l~~~~-~~v~~~~vd~~~---~~~~~~~~~i~~~--   77 (118)
T 2f51_A            4 PIVHFNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEAN-KDVTFIKVDVDK---NGNAADAYGVSSI--   77 (118)
T ss_dssp             CSEEECSCHHHHHHHHHHCSSCEEEEEECTTCHHHHHHHHHHHHHHHHC-TTSEEEEEETTT---CHHHHHHTTCCSS--
T ss_pred             cceEecCCHHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHC-CCeEEEEEECCC---CHHHHHhcCCCCC--
Confidence            34555  456666 34456778888999999 99999999999999999 679999999998   5689999999988  


Q ss_pred             cEEEEEeCC---CCceecCCCCCCHHHHHHHHHHHhc
Q 013976          228 KVLAYTGND---DAKKHILDGELTLDKIKTFGEDFLE  261 (432)
Q Consensus       228 P~i~i~~~~---~~~~y~~~~~~~~~~i~~fi~~~~~  261 (432)
                      |+++++..+   +.....+.|. ..+.|.+.+..+..
T Consensus        78 Pt~~~~~~~~~~G~~~~~~~G~-~~~~l~~~~~~~~~  113 (118)
T 2f51_A           78 PALFFVKKEGNEIKTLDQFVGA-DVSRIKADIEKFKH  113 (118)
T ss_dssp             SEEEEEEEETTEEEEEEEEESC-CHHHHHHHHHHHC-
T ss_pred             CEEEEEeCCCCcceEEEeecCC-CHHHHHHHHHHhhh
Confidence            999988651   1223345564 45669999988753

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=98.67  E-value=2.4e-08  Score=83.95  Aligned_cols=85  Identities=16%  Similarity=0.289  Sum_probs=65.8

Q ss_pred             CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCcc-----------------------c--ccCCCC
Q 013976          296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE-----------------------H--HRAKSD  350 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~-----------------------~--~~~~i~  350 (432)
                      .++++||.||++||++|+...|.+.+++..     ++.++.|+++...                       .  ..|++.
T Consensus        57 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~-----~v~vv~vs~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~  131 (176)
T 3kh7_A           57 KGKPALVNVWGTWCPSCRVEHPELTRLAEQ-----GVVIYGINYKDDNAAAIKWLNELHNPYLLSISDADGTLGLDLGVY  131 (176)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHT-----TCEEEEEEESCCHHHHHHHHHHTTCCCSEEEEETTCHHHHHHTCC
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHC-----CCEEEEEeCCCCHHHHHHHHHHcCCCCceEEECCcchHHHHcCCC
Confidence            368999999999999999999999998875     3677777743211                       1  357899


Q ss_pred             CCceEEEE-eCCCcccCceeccCCCCHHHHHHHHHhcCC
Q 013976          351 GFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNAS  388 (432)
Q Consensus       351 ~~P~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  388 (432)
                      ++|+++++ ++|..+.   .+.|..+.+.+.++|.+.+.
T Consensus       132 ~~P~~~lid~~G~i~~---~~~g~~~~~~l~~~l~~~l~  167 (176)
T 3kh7_A          132 GAPETYLIDKQGIIRH---KIVGVVDQKVWREQLAPLYQ  167 (176)
T ss_dssp             SSCEEEEECTTCBEEE---EEESCCCHHHHHHHTHHHHH
T ss_pred             CCCeEEEECCCCeEEE---EEcCCCCHHHHHHHHHHHHH
Confidence            99988888 5665543   67788899998888887654

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=98.67  E-value=3.3e-08  Score=78.98  Aligned_cols=102  Identities=14%  Similarity=0.172  Sum_probs=80.7

Q ss_pred             ceeecCC-CchhhhccC--CCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCC
Q 013976          152 LVTIFTR-ENAPSVFES--PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAP  227 (432)
Q Consensus       152 ~v~~l~~-~~~~~~~~~--~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~  227 (432)
                      .+.+++. +++...+..  ++++++.||++| +.|+.+.+.+.+++..+  .+.|+.+|++.   +..+++.||+.+.  
T Consensus        21 ~v~~l~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~--~v~~~~vd~~~---~~~l~~~~~v~~~--   93 (133)
T 3cxg_A           21 IYIELKNTGSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYY--YVTLVDIDVDI---HPKLNDQHNIKAL--   93 (133)
T ss_dssp             EEEECCCTTHHHHHHTC-CCSEEEEEEECTTCHHHHHTHHHHHGGGGTE--ECEEEEEETTT---CHHHHHHTTCCSS--
T ss_pred             cEEEecChhHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHhc--CEEEEEEeccc---hHHHHHhcCCCCC--
Confidence            4566664 677766654  357788899999 99999999999999988  59999999987   5689999999988  


Q ss_pred             cEEEEEe--CCCC-ceecCCCCCCHHHHHHHHHHHhc
Q 013976          228 KVLAYTG--NDDA-KKHILDGELTLDKIKTFGEDFLE  261 (432)
Q Consensus       228 P~i~i~~--~~~~-~~y~~~~~~~~~~i~~fi~~~~~  261 (432)
                      |+++++.  ++++ ....+.|. +.+.|.++++.++.
T Consensus        94 Pt~~~~~~~~g~g~~~~~~~G~-~~~~l~~~l~~~l~  129 (133)
T 3cxg_A           94 PTFEFYFNLNNEWVLVHTVEGA-NQNDIEKAFQKYCL  129 (133)
T ss_dssp             SEEEEEEEETTEEEEEEEEESC-CHHHHHHHHHHHSE
T ss_pred             CEEEEEEecCCCeEEEEEEcCC-CHHHHHHHHHHHHH
Confidence            9998884  3322 33445675 89999999999875

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}

Probab=98.67  E-value=4.8e-09  Score=94.37  Aligned_cols=73  Identities=18%  Similarity=0.205  Sum_probs=56.5

Q ss_pred             cEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCC------ccc--ccCCCCCCceEEEEeCCCcccCceec
Q 013976          299 DVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT------NEH--HRAKSDGFPTILFFPAGNKSFDPINV  370 (432)
Q Consensus       299 ~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~------~~~--~~~~i~~~P~i~~~~~g~~~~~~~~y  370 (432)
                      ..+|+||||||++|+.+.|.|+++++.+.        .+|++.      +..  .+++|+++||+.+  +|+      .|
T Consensus       199 ~~vV~F~A~WC~~Ck~l~p~le~lA~~l~--------~Vd~d~~d~~~~~~~la~~~gI~~vPT~~i--~G~------~~  262 (291)
T 3kp9_A          199 IGGTMYGAYWCPHCQDQKELFGAAFDQVP--------YVECSPNGPGTPQAQECTEAGITSYPTWII--NGR------TY  262 (291)
T ss_dssp             TTCEEEECTTCHHHHHHHHHHGGGGGGSC--------EEESCSSCSSSCCCHHHHTTTCCSTTEEEE--TTE------EE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHHHHHcC--------EEEEeecCchhhHHHHHHHcCCcccCeEEE--CCE------Ee
Confidence            34799999999999999999999986542        345552      222  5899999999554  553      58


Q ss_pred             cCCCCHHHHHHHHHhcC
Q 013976          371 DVDRTVVALYKFLKKNA  387 (432)
Q Consensus       371 ~g~~~~~~l~~fi~~~~  387 (432)
                      .|.++.+.|.+|+.-..
T Consensus       263 ~G~~~~~~L~~~l~~~~  279 (291)
T 3kp9_A          263 TGVRSLEALAVASGYPL  279 (291)
T ss_dssp             ESCCCHHHHHHHTCCCC
T ss_pred             cCCCCHHHHHHHHCCCC
Confidence            99999999999986443

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=98.67  E-value=4.2e-08  Score=78.27  Aligned_cols=93  Identities=15%  Similarity=0.142  Sum_probs=76.5

Q ss_pred             cCCCcceEEEEEeC-cchhhhHHHHH--HHHHhccCceEEEEEecCCcccccchhhhhCC---CCCCCcEEEEEeCCCCc
Q 013976          166 ESPIKNQLLLFAVS-NDSEKLLPVFE--EAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGI---TGEAPKVLAYTGNDDAK  239 (432)
Q Consensus       166 ~~~~~~~i~~~~~~-~~~~~~~~~~~--~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i---~~~~~P~i~i~~~~~~~  239 (432)
                      ..++++++.|+++| ++|+.+.+.|.  +++..+.+++.|+.+|++..+-+..+++.||+   .+.  |++++++.++..
T Consensus        27 ~~~k~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~~~vd~~~~~~~~~l~~~~~v~~~~~~--Pt~~~~d~~G~~  104 (133)
T 3fk8_A           27 RTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFDRNLELSQAYGDPIQDGI--PAVVVVNSDGKV  104 (133)
T ss_dssp             HHTCCEEEEEECTTCHHHHHHHHHHTSHHHHHHHHHHCEEEEEECTTTTSSHHHHHHTTCGGGGCS--SEEEEECTTSCE
T ss_pred             hcCCcEEEEEcCCCCHHHHHHHHHhCCHHHHHHhcCCEEEEEEeCCcccchHHHHHHhCCccCCcc--ceEEEECCCCCE
Confidence            45678889999999 99999999999  99999988899999999322126789999999   887  999999666555


Q ss_pred             eecCCC-------CCCHHHHHHHHHHHh
Q 013976          240 KHILDG-------ELTLDKIKTFGEDFL  260 (432)
Q Consensus       240 ~y~~~~-------~~~~~~i~~fi~~~~  260 (432)
                      .+...|       ..+.+.+.+|++.+.
T Consensus       105 ~~~~~g~~~~~~~~~~~~~l~~~l~~l~  132 (133)
T 3fk8_A          105 RYTTKGGELANARKMSDQGIYDFFAKIT  132 (133)
T ss_dssp             EEECCSCTTTTGGGSCHHHHHHHHHHHH
T ss_pred             EEEecCCcccccccCCHHHHHHHHHHhc
Confidence            556666       578999999998763

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=98.67  E-value=5.2e-08  Score=70.87  Aligned_cols=80  Identities=15%  Similarity=0.137  Sum_probs=68.8

Q ss_pred             ceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCceecCCCCCCH
Q 013976          171 NQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTL  249 (432)
Q Consensus       171 ~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~~~~  249 (432)
                      .+++|+++| +.|+.+.+.+.++++++.+++.|+.+|++.   ++.+++.||+.+.  |++++  ++  +. .+.|..+.
T Consensus         4 ~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~---~~~~~~~~~v~~~--Pt~~~--~G--~~-~~~G~~~~   73 (85)
T 1nho_A            4 NIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMV---DREKAIEYGLMAV--PAIAI--NG--VV-RFVGAPSR   73 (85)
T ss_dssp             CEEEESCSSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTT---CGGGGGGTCSSCS--SEEEE--TT--TE-EEECSSCC
T ss_pred             EEEEEECCCCcchHHHHHHHHHHHHHhcCCeEEEEEECCC---CHHHHHhCCceee--CEEEE--CC--EE-EEccCCCH
Confidence            467888999 999999999999999999889999999987   5588999999988  99977  32  33 56787899


Q ss_pred             HHHHHHHHHHh
Q 013976          250 DKIKTFGEDFL  260 (432)
Q Consensus       250 ~~i~~fi~~~~  260 (432)
                      +.+.+++++.+
T Consensus        74 ~~l~~~l~~~l   84 (85)
T 1nho_A           74 EELFEAINDEM   84 (85)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHHh
Confidence            99999998865

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}

Probab=98.11  E-value=2.7e-09  Score=88.22  Aligned_cols=89  Identities=15%  Similarity=0.241  Sum_probs=65.6

Q ss_pred             CCCcEEEEEeCCCChhhhhhHHHHHH-HHHHhcCCCCEEEEEEeCCCccc--ccCC------------------------
Q 013976          296 ESKDVLLEIYAPWCGHCQAFEPTYNK-LAKHLRGVDSIVIAKMDGTTNEH--HRAK------------------------  348 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~c~~~~~~~~~-la~~~~~~~~~~~~~id~~~~~~--~~~~------------------------  348 (432)
                      .+++++|.||++||++|+.+.|.+.+ +...+....++.++.|+++....  ..+.                        
T Consensus        32 ~gk~vll~f~a~~C~~C~~~~~~l~~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  111 (159)
T 2ls5_A           32 RGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNADFALIGIDRDEPLEKVLAFAKSTGVTYPLGLDPGADIFAKYALR  111 (159)
Confidence            35799999999999999999999998 88888722378888888876532  2332                        


Q ss_pred             CCCCceEEEE-eCCCcccCceeccCCCCHHHHHHHHHhcCC
Q 013976          349 SDGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNAS  388 (432)
Q Consensus       349 i~~~P~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  388 (432)
                      +.++|+++++ ++|+.+.   .+.| .+.+.+.++|++..+
T Consensus       112 ~~~~P~~~lid~~G~i~~---~~~g-~~~~~l~~~l~~l~~  148 (159)
T 2ls5_A          112 DAGITRNVLIDREGKIVK---LTRL-YNEEEFASLVQQINE  148 (159)
Confidence            5679999999 7776653   4444 556667776665543

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=98.65  E-value=3.5e-08  Score=77.66  Aligned_cols=101  Identities=17%  Similarity=0.144  Sum_probs=78.8

Q ss_pred             CceeecCCCchhhhccC--CCcceEEEEEe-------C-cchhhhHHHHHHHHHhccCceEEEEEec-------CCcccc
Q 013976          151 PLVTIFTRENAPSVFES--PIKNQLLLFAV-------S-NDSEKLLPVFEEAAKSFKGKLIFVYVQM-------DNEDVG  213 (432)
Q Consensus       151 p~v~~l~~~~~~~~~~~--~~~~~i~~~~~-------~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~-------~~~~~~  213 (432)
                      ..+...+.+++...+..  ++++++.||++       | ++|+.+.+.+.++++++.+++.|+.+|+       +.   +
T Consensus         5 ~~v~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~~~~d~---~   81 (123)
T 1wou_A            5 EEVSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDP---N   81 (123)
T ss_dssp             EEEEEESHHHHHHHHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCT---T
T ss_pred             eeEEeccHHHHHHHHHHhCCCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcCCCcEEEEEECCCchhhhch---h
Confidence            34555667777766554  67888999999       9 9999999999999999988899999999       44   5


Q ss_pred             cchhhhhCCCCCCCcEEEEEeCCCCceecCCCCCCHHHHHHHHHH
Q 013976          214 KPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGED  258 (432)
Q Consensus       214 ~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~  258 (432)
                      ..+++.|++.+.  |+++++... .....+.+ .+.+.|.+|+++
T Consensus        82 ~~~~~~~~i~~~--Pt~~~~~~~-~~~~g~~~-~~~~~l~~~i~~  122 (123)
T 1wou_A           82 NDFRKNLKVTAV--PTLLKYGTP-QKLVESEC-LQANLVEMLFSE  122 (123)
T ss_dssp             CHHHHHHCCCSS--SEEEETTSS-CEEEGGGG-GCHHHHHHHHHC
T ss_pred             HHHHHHCCCCee--CEEEEEcCC-ceEecccc-CCHHHHHHHHhc
Confidence            688999999988  999888652 22222233 578889998864

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=98.63  E-value=3.3e-08  Score=74.58  Aligned_cols=78  Identities=19%  Similarity=0.186  Sum_probs=60.3

Q ss_pred             CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCC--Cccc--ccCCCCCCceEEEEeCCCcccCceeccC
Q 013976          297 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT--TNEH--HRAKSDGFPTILFFPAGNKSFDPINVDV  372 (432)
Q Consensus       297 ~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~--~~~~--~~~~i~~~P~i~~~~~g~~~~~~~~y~g  372 (432)
                      +.+.+++|+++||++|+.+.+.+.+++    .  ++.|..+|++  .+..  .+++ .++|++  +.+|+.     ...+
T Consensus        15 ~~~~v~~f~~~~C~~C~~~~~~L~~l~----~--~i~~~~vdi~~~~~~el~~~~g-~~vP~l--~~~g~~-----~~~~   80 (100)
T 1wjk_A           15 ALPVLTLFTKAPCPLCDEAKEVLQPYK----D--RFILQEVDITLPENSTWYERYK-FDIPVF--HLNGQF-----LMMH   80 (100)
T ss_dssp             CCCEEEEEECSSCHHHHHHHHHTSTTS----S--SSEEEEEETTSSTTHHHHHHSS-SSCSEE--EESSSE-----EEES
T ss_pred             CCCEEEEEeCCCCcchHHHHHHHHHhh----h--CCeEEEEECCCcchHHHHHHHC-CCCCEE--EECCEE-----EEec
Confidence            467899999999999999999888763    2  4899999998  4432  4788 999976  456654     2345


Q ss_pred             CCCHHHHHHHHHhcCC
Q 013976          373 DRTVVALYKFLKKNAS  388 (432)
Q Consensus       373 ~~~~~~l~~fi~~~~~  388 (432)
                      ..+.+.|.++|.++..
T Consensus        81 g~~~~~l~~~l~~~~~   96 (100)
T 1wjk_A           81 RVNTSKLEKQLRKLSG   96 (100)
T ss_dssp             SCCHHHHHHHHHSSSC
T ss_pred             CCCHHHHHHHHHHHHh
Confidence            6899999999987654

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.62  E-value=1.6e-07  Score=75.08  Aligned_cols=100  Identities=11%  Similarity=0.020  Sum_probs=77.2

Q ss_pred             CCceeecCCCchhhhccC---CCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCC
Q 013976          150 LPLVTIFTRENAPSVFES---PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGE  225 (432)
Q Consensus       150 ~p~v~~l~~~~~~~~~~~---~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~  225 (432)
                      ...+.+++.+++...+..   ++++++.||++| ++|+.+.+.|.++|.++.+ +.|+.+|++..      .+.|+|...
T Consensus         9 ~g~v~~i~~~~~~~~v~~~~~~~~vvv~f~a~wC~~C~~~~p~l~~la~~~~~-v~~~~vd~~~~------~~~~~i~~~   81 (135)
T 2dbc_A            9 FGELREISGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKFPE-TKFVKAIVNSC------IEHYHDNCL   81 (135)
T ss_dssp             CCSCEECCHHHHHHHTTTCCSSCEEEEEECCTTCHHHHHHHHHHHHHHHHCSS-EEEEEECCSSS------CSSCCSSCC
T ss_pred             CCceEEcCHHHHHHHHHhcCCCCEEEEEEECCCChHHHHHHHHHHHHHHHCCC-cEEEEEEhhcC------cccCCCCCC
Confidence            445677788888775543   246788899999 9999999999999999964 99999999873      277899887


Q ss_pred             CCcEEEEEeCCCCceecCCCC-------CCHHHHHHHHHHH
Q 013976          226 APKVLAYTGNDDAKKHILDGE-------LTLDKIKTFGEDF  259 (432)
Q Consensus       226 ~~P~i~i~~~~~~~~y~~~~~-------~~~~~i~~fi~~~  259 (432)
                        |+++++.++. ....+.|.       ++.+.|.+|+..+
T Consensus        82 --Pt~~~~~~G~-~v~~~~G~~~~~~~~~~~~~l~~~l~~~  119 (135)
T 2dbc_A           82 --PTIFVYKNGQ-IEGKFIGIIECGGINLKLEELEWKLSEV  119 (135)
T ss_dssp             --SEEEEESSSS-CSEEEESTTTTTCTTCCHHHHHHHHHHH
T ss_pred             --CEEEEEECCE-EEEEEEeEEeeCCCcCCHHHHHHHHHHc
Confidence              9999887554 22233332       4889999999986

>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}

Probab=98.60  E-value=2.9e-08  Score=82.98  Aligned_cols=88  Identities=14%  Similarity=0.109  Sum_probs=68.2

Q ss_pred             CCCcEEEEEeCCCChh-hhhhHHHHHHHHHHhcCC--CCEEEEEEeCCCccc----------------------------
Q 013976          296 ESKDVLLEIYAPWCGH-CQAFEPTYNKLAKHLRGV--DSIVIAKMDGTTNEH----------------------------  344 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~-c~~~~~~~~~la~~~~~~--~~~~~~~id~~~~~~----------------------------  344 (432)
                      .++++||.||++||.+ |....|.+.++...++..  .++.++.|+++.+..                            
T Consensus        34 ~gk~vll~f~~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~d~~~~~~~  113 (172)
T 2k6v_A           34 QDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPERDPPEVADRYAKAFHPSFLGLSGSPEAVRE  113 (172)
T ss_dssp             TTSEEEEEEECTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCTTTCCHHHHHHHHHHHCTTEEEECCCHHHHHH
T ss_pred             CCCEEEEEEECCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEECCCCCCHHHHHHHHHHhCCCcEEEeCCHHHHHH
Confidence            4689999999999997 999999999999988743  269999999875311                            


Q ss_pred             --c---------------cCCCCCCceEEEEeCCCcccCceeccCCC--CHHHHHHHHHhc
Q 013976          345 --H---------------RAKSDGFPTILFFPAGNKSFDPINVDVDR--TVVALYKFLKKN  386 (432)
Q Consensus       345 --~---------------~~~i~~~P~i~~~~~g~~~~~~~~y~g~~--~~~~l~~fi~~~  386 (432)
                        .               .+.+..+|+++++.+|+.+.   .+.|..  +.+.|.+.|++.
T Consensus       114 ~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid~G~i~~---~~~g~~~~~~~~l~~~l~~l  171 (172)
T 2k6v_A          114 AAQTFGVFYQKSQYRGPGEYLVDHTATTFVVKEGRLVL---LYSPDKAEATDRVVADLQAL  171 (172)
T ss_dssp             HHHHHTCCEEEEEEEETTEEEEEECCCEEEEETTEEEE---EECHHHHTCHHHHHHHHHHC
T ss_pred             HHHhcCeEEEeccCCCCCCceEecCCEEEEEECCEEEE---EECCCCCCCHHHHHHHHHHh
Confidence              0               12356889999999554433   566766  899999999875

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=98.59  E-value=1.6e-07  Score=72.90  Aligned_cols=100  Identities=10%  Similarity=-0.013  Sum_probs=77.3

Q ss_pred             CCceeecCCCchhhhccC-CC--cceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCC
Q 013976          150 LPLVTIFTRENAPSVFES-PI--KNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGE  225 (432)
Q Consensus       150 ~p~v~~l~~~~~~~~~~~-~~--~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~  225 (432)
                      +..+.+++.+++...+.. +.  ++++.||++| ++|+.+.+.++++|.+|.+ +.|+.+|+++.      ...|++...
T Consensus         2 ~G~v~~it~~~f~~~v~~~~~~~~vvv~F~a~wc~~C~~~~p~l~~la~~~~~-v~f~kvd~d~~------~~~~~v~~~   74 (118)
T 3evi_A            2 FGELREISGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFPE-TKFVKAIVNSC------IQHYHDNCL   74 (118)
T ss_dssp             CCSCEECCGGGHHHHTTTCCTTCEEEEEEECTTSHHHHHHHHHHHHHHHHCTT-SEEEEEEGGGT------STTCCGGGC
T ss_pred             CcceEEeCHHHHHHHHHhcCCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC-CEEEEEEhHHh------HHHCCCCCC
Confidence            345778899998875543 33  6788899999 9999999999999999975 99999999862      478899887


Q ss_pred             CCcEEEEEeCCCCc--eecCC---C-CCCHHHHHHHHHH
Q 013976          226 APKVLAYTGNDDAK--KHILD---G-ELTLDKIKTFGED  258 (432)
Q Consensus       226 ~~P~i~i~~~~~~~--~y~~~---~-~~~~~~i~~fi~~  258 (432)
                        |+++++.+++..  ..-+.   | .++.+.|..++.+
T Consensus        75 --PT~~~fk~G~~v~~~~G~~~~gg~~~~~~~le~~L~~  111 (118)
T 3evi_A           75 --PTIFVYKNGQIEAKFIGIIECGGINLKLEELEWKLAE  111 (118)
T ss_dssp             --SEEEEEETTEEEEEEESTTTTTCSSCCHHHHHHHHHT
T ss_pred             --CEEEEEECCEEEEEEeChhhhCCCCCCHHHHHHHHHH
Confidence              999999776421  11111   1 5789999999977

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=98.58  E-value=2.5e-08  Score=79.21  Aligned_cols=102  Identities=18%  Similarity=0.222  Sum_probs=80.8

Q ss_pred             eeec-CCCchhhhcc----CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCC
Q 013976          153 VTIF-TRENAPSVFE----SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEA  226 (432)
Q Consensus       153 v~~l-~~~~~~~~~~----~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~  226 (432)
                      +.++ +.+++...+.    .+++.++.||++| +.|+.+.+.+.+++.++. .+.|+.+|++.   +..+++.|++... 
T Consensus        16 ~~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~v~~~~---~~~~~~~~~v~~~-   90 (130)
T 1wmj_A           16 VIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFP-GAVFLKVDVDE---LKEVAEKYNVEAM-   90 (130)
T ss_dssp             SBCCSSSHHHHHHHHHHHTTTCBCBEECCSSSCSCSSSSHHHHHHHHHHCT-TBCCEECCTTT---SGGGHHHHTCCSS-
T ss_pred             eEEcCCHHHHHHHHHHHhhcCCEEEEEEECCCChhHHHHHHHHHHHHHHCC-CCEEEEEeccc---hHHHHHHcCCCcc-
Confidence            4445 4466665554    3668889999999 999999999999999997 49999999987   5689999999988 


Q ss_pred             CcEEEEEeCCCCceecCCCCCCHHHHHHHHHHHhcC
Q 013976          227 PKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEG  262 (432)
Q Consensus       227 ~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g  262 (432)
                       |+++++.++ .....+.| .+.+.|.+|+.+++..
T Consensus        91 -Pt~~~~~~g-~~~~~~~g-~~~~~l~~~l~~~~~~  123 (130)
T 1wmj_A           91 -PTFLFIKDG-AEADKVVG-ARKDDLQNTIVKHVGA  123 (130)
T ss_dssp             -CCCCBCTTT-TCCBCCCT-TCTTTHHHHHHHHTSS
T ss_pred             -ceEEEEeCC-eEEEEEeC-CCHHHHHHHHHHHHhc
Confidence             998877433 33445567 6889999999998864

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*

Probab=98.58  E-value=3.3e-08  Score=94.73  Aligned_cols=109  Identities=13%  Similarity=0.148  Sum_probs=85.6

Q ss_pred             CceeecCCCchhhhccCC--CcceEEEEEeC-cchhhhHHHHHHHHHhcc---C-----ceEEEEEecCCcccccchhhh
Q 013976          151 PLVTIFTRENAPSVFESP--IKNQLLLFAVS-NDSEKLLPVFEEAAKSFK---G-----KLIFVYVQMDNEDVGKPVSEY  219 (432)
Q Consensus       151 p~v~~l~~~~~~~~~~~~--~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~---~-----~i~f~~vd~~~~~~~~~l~~~  219 (432)
                      ..+..++.++|...+..+  ++++|.||++| ++|+.+.+.|.++++++.   +     ++.|+.||++.   ++.+++.
T Consensus        23 ~~V~~Lt~~~F~~~l~~~~~k~VlV~FyA~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~---~~~la~~   99 (470)
T 3qcp_A           23 SSVVDLSGDDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCAS---EVDLCRK   99 (470)
T ss_dssp             TTEEECSCSCGGGTCTTGGGSCEEEEEECTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTT---CHHHHHH
T ss_pred             CCcEECCHHHHHHHHHhCCCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCC---CHHHHHH
Confidence            358889999999887644  56889999999 999999999999999997   3     59999999998   5689999


Q ss_pred             hCCCCCCCcEEEEEeCCCC-ceecCCCC------------CCHHHHHHHHHHHhcCCc
Q 013976          220 FGITGEAPKVLAYTGNDDA-KKHILDGE------------LTLDKIKTFGEDFLEGKL  264 (432)
Q Consensus       220 ~~i~~~~~P~i~i~~~~~~-~~y~~~~~------------~~~~~i~~fi~~~~~g~l  264 (432)
                      |+|.++  |+++++..++. ....|.|.            ++.+.+...++.+++..+
T Consensus       100 y~V~~~--PTlilf~~gg~~~~~~y~G~r~~e~L~fI~k~l~~~eLe~~~e~Link~~  155 (470)
T 3qcp_A          100 YDINFV--PRLFFFYPRDSCRSNEECGTSSLEHVAFENSHLEVDELESEVRRLVNKHM  155 (470)
T ss_dssp             TTCCSS--CEEEEEEESSCCCTTSCCCCCCEEEEECSCTTCCHHHHHHHHHHHHHHHC
T ss_pred             cCCCcc--CeEEEEECCCceEEEEeeCCCCHHHHHHHHHhcCHHHHHHHHHHHhhhcc
Confidence            999998  99998865442 33345553            455667776666655443

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=98.58  E-value=8.5e-08  Score=76.63  Aligned_cols=99  Identities=7%  Similarity=0.080  Sum_probs=77.6

Q ss_pred             CchhhhccC--CCcceEEEEEeC-cchhhhHHHH---HHHHHhccCceEEEEEecCCc-ccccchhhhhCCCCCCCcEEE
Q 013976          159 ENAPSVFES--PIKNQLLLFAVS-NDSEKLLPVF---EEAAKSFKGKLIFVYVQMDNE-DVGKPVSEYFGITGEAPKVLA  231 (432)
Q Consensus       159 ~~~~~~~~~--~~~~~i~~~~~~-~~~~~~~~~~---~~~a~~~~~~i~f~~vd~~~~-~~~~~l~~~~~i~~~~~P~i~  231 (432)
                      +.+...+..  ++++++.||++| +.|+.+.+.+   .++++.+.+ +.|+.+|++.. +....+++.||+.+.  |+++
T Consensus        20 ~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~~-~~~~~vd~~~~~~~~~~l~~~~~v~~~--Pt~~   96 (134)
T 2fwh_A           20 DELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALAD-TVLLQANVTANDAQDVALLKHLNVLGL--PTIL   96 (134)
T ss_dssp             HHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTTT-SEEEEEECTTCCHHHHHHHHHTTCCSS--SEEE
T ss_pred             HHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcC-cEEEEEeCCCCcchHHHHHHHcCCCCC--CEEE
Confidence            444443332  667888999999 9999999988   899999987 99999999542 115688999999988  9999


Q ss_pred             EEeCCCCce--ecCCCCCCHHHHHHHHHHHh
Q 013976          232 YTGNDDAKK--HILDGELTLDKIKTFGEDFL  260 (432)
Q Consensus       232 i~~~~~~~~--y~~~~~~~~~~i~~fi~~~~  260 (432)
                      +++.++...  +.+.|..+.+.|.++++..-
T Consensus        97 ~~d~~G~~v~~~~~~G~~~~~~l~~~l~~~~  127 (134)
T 2fwh_A           97 FFDGQGQEHPQARVTGFMDAETFSAHLRDRQ  127 (134)
T ss_dssp             EECTTSCBCGGGCBCSCCCHHHHHHHHHHC-
T ss_pred             EECCCCCEeeeeeeeeccCHHHHHHHHHhcC
Confidence            996554333  57889999999999998753

>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A

Probab=98.57  E-value=2.4e-07  Score=78.64  Aligned_cols=89  Identities=13%  Similarity=0.124  Sum_probs=68.4

Q ss_pred             CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCC-------ccc------c-c---------------
Q 013976          296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT-------NEH------H-R---------------  346 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~-------~~~------~-~---------------  346 (432)
                      .++++||.||++||++|....|.+.++...|++. ++.++.|+++.       ...      . .               
T Consensus        45 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~-~~~vi~is~d~~~~~e~~~~~~~~~~~~~~~~~~~p~~~~~d~~~  123 (187)
T 3dwv_A           45 KGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQ-GFTVLAFPSNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNG  123 (187)
T ss_dssp             TTSCEEEEEECCBCSCCTTHHHHHHHHHHHHGGG-TCEEEEEEBCCCSSCSSSBTTHHHHSCCBCCCCSSCBBCCBCCSC
T ss_pred             CCCEEEEEEecCCCCCcHHHHHHHHHHHHHhhhC-CeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCCceeeccccCC
Confidence            4689999999999999999999999999999874 58888887652       000      0 1               


Q ss_pred             -----------------CCCCCCc---eEEEE-eCCCcccCceeccCCCCHHHHHHHHHhcCC
Q 013976          347 -----------------AKSDGFP---TILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNAS  388 (432)
Q Consensus       347 -----------------~~i~~~P---~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  388 (432)
                                       +++..+|   +.+++ ++|..+.   .+.|..+.+.|.+.|++.+.
T Consensus       124 ~~~~~~~~~l~~~~~~~~~~~~iP~~~~~~liD~~G~i~~---~~~g~~~~~~l~~~i~~lL~  183 (187)
T 3dwv_A          124 ENAHPLYEYMKKTKPGILATKAIKWNFTSFLIDRDGVPVE---RFSPGASVKDIEEKLIPLLG  183 (187)
T ss_dssp             C-CCHHHHHHHHHSCCSBSSSSCCSTTCEEEECTTSCEEE---EECTTCCHHHHHHHHHHHC-
T ss_pred             cchhHHHHHHHhhcCCccCCCccccceeEEEECCCCCEEE---EECCCCCHHHHHHHHHHHHh
Confidence                             0234566   87777 7777654   67888899999999998875

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}

Probab=98.57  E-value=1.4e-07  Score=78.65  Aligned_cols=89  Identities=11%  Similarity=0.137  Sum_probs=70.3

Q ss_pred             CCcEEEEEeCCCChh-hhhhHHHHHHHHHHhcC---CCCEEEEEEeCCCcc-----------------------------
Q 013976          297 SKDVLLEIYAPWCGH-CQAFEPTYNKLAKHLRG---VDSIVIAKMDGTTNE-----------------------------  343 (432)
Q Consensus       297 ~~~~lv~f~~~~c~~-c~~~~~~~~~la~~~~~---~~~~~~~~id~~~~~-----------------------------  343 (432)
                      ++++||.||++||++ |....+.+.++...++.   ..++.++.|+++...                             
T Consensus        26 gk~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~  105 (171)
T 2rli_A           26 GQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYVQDFHPRLLGLTGSTKQVAQ  105 (171)
T ss_dssp             TSEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHHHHHHHTTCTTCCEEECCHHHHHH
T ss_pred             CCEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHHH
Confidence            589999999999998 99999999999999963   137898888887421                             


Q ss_pred             c-ccCCCCCCc---------------eEEEE-eCCCcccCceeccCCCCHHHHHHHHHhcCC
Q 013976          344 H-HRAKSDGFP---------------TILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNAS  388 (432)
Q Consensus       344 ~-~~~~i~~~P---------------~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  388 (432)
                      . ..|++...|               +++++ ++|..+.   .+.|..+.+.|.+.|++.+.
T Consensus       106 ~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~---~~~g~~~~~~l~~~l~~ll~  164 (171)
T 2rli_A          106 ASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTD---YYGRSRSAEQISDSVRRHMA  164 (171)
T ss_dssp             HHHHSCCCCEECCCCSSCCCCEECCCEEEEECTTSCEEE---EEESSCCHHHHHHHHHHHHH
T ss_pred             HHHHhCeEEEecCCCCCCCeEEeccceEEEECCCCeEEE---EECCCCCHHHHHHHHHHHHH
Confidence            1 257777777               77777 6776654   67888899999999988763

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A

Probab=98.56  E-value=1.5e-07  Score=77.96  Aligned_cols=90  Identities=7%  Similarity=0.052  Sum_probs=71.0

Q ss_pred             CCCcEEEEEeCCCChh-hhhhHHHHHHHHHHhcCC---CCEEEEEEeCCCcc----------------------------
Q 013976          296 ESKDVLLEIYAPWCGH-CQAFEPTYNKLAKHLRGV---DSIVIAKMDGTTNE----------------------------  343 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~-c~~~~~~~~~la~~~~~~---~~~~~~~id~~~~~----------------------------  343 (432)
                      .++++||.||++||++ |....+.+.++...++..   .++.++.|+++...                            
T Consensus        22 ~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~~~~~~~~~~~~~~~~l~~~~d~~~  101 (164)
T 2ggt_A           22 LGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVD  101 (164)
T ss_dssp             TTCEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTTCCHHHHHHHHHTTCSSCEEEECCHHHHH
T ss_pred             CCCEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHH
Confidence            3689999999999998 999999999999999741   36888888876521                            


Q ss_pred             -c-ccCCCCCCc---------------eEEEE-eCCCcccCceeccCCCCHHHHHHHHHhcCC
Q 013976          344 -H-HRAKSDGFP---------------TILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNAS  388 (432)
Q Consensus       344 -~-~~~~i~~~P---------------~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  388 (432)
                       . ..+++...|               +++++ ++|..+.   .+.|..+.+.|.+.|++.+.
T Consensus       102 ~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~---~~~g~~~~~~l~~~l~~ll~  161 (164)
T 2ggt_A          102 QVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLD---YFGQNKRKGEIAASIATHMR  161 (164)
T ss_dssp             HHHHTTTCCEEEEEECTTSCEEEEECCEEEEECTTSCEEE---EEETTCCHHHHHHHHHHHHG
T ss_pred             HHHHhcCeEEEecCCCCCCCeeEeccceEEEECCCCeEEE---EeCCCCCHHHHHHHHHHHHH
Confidence             1 357888888               66666 6776654   67788899999999987653

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}

Probab=97.96  E-value=8.2e-09  Score=83.46  Aligned_cols=68  Identities=19%  Similarity=0.363  Sum_probs=54.5

Q ss_pred             CC-cEEEEEeCCCChhhhhhHHHHHHHHHHhcCC-CCEEEEEEeCCCcc--------------------------c-ccC
Q 013976          297 SK-DVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV-DSIVIAKMDGTTNE--------------------------H-HRA  347 (432)
Q Consensus       297 ~~-~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~-~~~~~~~id~~~~~--------------------------~-~~~  347 (432)
                      ++ +++|.||++||++|+.+.|.+.+++..++.. .++.++.|+++...                          . ..+
T Consensus        25 gk~~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (143)
T 2lus_A           25 DKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMMESHGDWLAIPYRSGPASNVTAKY  104 (143)
Confidence            45 9999999999999999999999999998532 36777777776542                          1 467


Q ss_pred             CCCCCceEEEEe-CCCcc
Q 013976          348 KSDGFPTILFFP-AGNKS  364 (432)
Q Consensus       348 ~i~~~P~i~~~~-~g~~~  364 (432)
                      ++.++|+++++. +|..+
T Consensus       105 ~v~~~P~~~lid~~G~i~  122 (143)
T 2lus_A          105 GITGIPALVIVKKDGTLI  122 (143)
Confidence            899999999996 66554

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=98.54  E-value=1.9e-08  Score=78.29  Aligned_cols=78  Identities=18%  Similarity=0.351  Sum_probs=55.9

Q ss_pred             CcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCc-----c-c-ccCCCCCCceEEEEeCCCcccCceec
Q 013976          298 KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN-----E-H-HRAKSDGFPTILFFPAGNKSFDPINV  370 (432)
Q Consensus       298 ~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-----~-~-~~~~i~~~P~i~~~~~g~~~~~~~~y  370 (432)
                      +.+++ ||++||++|+.+.+.|.+++.      .+.++.+|.+.+     . . ..+++.++|++  |.+|+.+.   .+
T Consensus        20 ~~vv~-f~a~~C~~C~~~~~~l~~~~~------~~~~v~v~~~~~~~~~~~~l~~~~~v~~~Pt~--~~~g~~v~---~~   87 (116)
T 2e7p_A           20 APVVV-FSKTYCGYCNRVKQLLTQVGA------SYKVVELDELSDGSQLQSALAHWTGRGTVPNV--FIGGKQIG---GC   87 (116)
T ss_dssp             SSEEE-EECTTCHHHHHHHHHHHHHTC------CCEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE--EETTEEEE---CH
T ss_pred             CCEEE-EECCCChhHHHHHHHHHHcCC------CeEEEEccCCCChHHHHHHHHHHhCCCCcCEE--EECCEEEC---Ch
Confidence            45555 999999999999999988842      356666665554     1 2 46899999999  55776543   44


Q ss_pred             cCCC---CHHHHHHHHHhcC
Q 013976          371 DVDR---TVVALYKFLKKNA  387 (432)
Q Consensus       371 ~g~~---~~~~l~~fi~~~~  387 (432)
                      .|..   +.+.|.++|++..
T Consensus        88 ~~~~~~~~~~~l~~~l~~~g  107 (116)
T 2e7p_A           88 DTVVEKHQRNELLPLLQDAA  107 (116)
T ss_dssp             HHHHHHHHTTCHHHHHHHTT
T ss_pred             HHHHHHHhCChHHHHHHHcc
Confidence            4433   5668889998764

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=98.54  E-value=2.1e-07  Score=76.83  Aligned_cols=86  Identities=13%  Similarity=0.119  Sum_probs=64.3

Q ss_pred             CCc-EEEEEe-CCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCC---------------------ccc--ccCCCCC
Q 013976          297 SKD-VLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT---------------------NEH--HRAKSDG  351 (432)
Q Consensus       297 ~~~-~lv~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~---------------------~~~--~~~~i~~  351 (432)
                      ++. +||.|| ++||++|....+.+.+++..+++. ++.++.|+++.                     +..  ..|++.+
T Consensus        28 gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~-~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  106 (161)
T 3drn_A           28 GKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDY-DVVVIGVSSDDINSHKRFKEKYKLPFILVSDPDKKIRELYGAKG  106 (161)
T ss_dssp             TTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHTT-CEEEEEEESCCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCCC
T ss_pred             CCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHc-CCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHcCCCC
Confidence            455 999999 999999999999999999999864 68888888862                     111  4678888


Q ss_pred             ----CceEEEE-eCCCcccCceeccC----CCCHHHHHHHHHhc
Q 013976          352 ----FPTILFF-PAGNKSFDPINVDV----DRTVVALYKFLKKN  386 (432)
Q Consensus       352 ----~P~i~~~-~~g~~~~~~~~y~g----~~~~~~l~~fi~~~  386 (432)
                          +|+++++ ++|..+.   .+.|    ....+.+++.|++.
T Consensus       107 ~~~~~P~~~lid~~G~i~~---~~~g~~~~~~~~~~il~~l~~l  147 (161)
T 3drn_A          107 FILPARITFVIDKKGIIRH---IYNSQMNPANHVNEALKALKQI  147 (161)
T ss_dssp             SSSCCCEEEEECTTSBEEE---EEECSSCTTHHHHHHHHHHHHH
T ss_pred             cCcccceEEEECCCCEEEE---EEecCCCCCcCHHHHHHHHHHh
Confidence                9999999 5665543   4555    23345666666543

>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A

Probab=98.53  E-value=1.9e-07  Score=77.69  Aligned_cols=89  Identities=15%  Similarity=0.144  Sum_probs=68.8

Q ss_pred             CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCC-------cc-c-----c-cC--------------
Q 013976          296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT-------NE-H-----H-RA--------------  347 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~-------~~-~-----~-~~--------------  347 (432)
                      .++++||.||++||++|....|.+.+++..+++. ++.++.|+++.       .. .     . ++              
T Consensus        31 ~gk~vll~f~a~~C~~C~~~~~~l~~l~~~~~~~-~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  109 (170)
T 2p5q_A           31 KGKVLLIVNVASKCGMTNSNYAEMNQLYEKYKDQ-GLEILAFPCNQFGEEEPGTNDQITDFVCTRFKSEFPIFDKIDVNG  109 (170)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG-TEEEEEEECCTTTTCCCSCHHHHHHHHHHHTCCCSCBBCCCBSSS
T ss_pred             CCCEEEEEEEeccCCccHHHHHHHHHHHHHhccC-CEEEEEEECCCCCCCCCCCHHHHHHHHHHhcCCCceeEeeeccCC
Confidence            4689999999999999999999999999999864 69999998752       00 0     1 11              


Q ss_pred             ---------------CC--CCCc---eEEEE-eCCCcccCceeccCCCCHHHHHHHHHhcCC
Q 013976          348 ---------------KS--DGFP---TILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNAS  388 (432)
Q Consensus       348 ---------------~i--~~~P---~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  388 (432)
                                     ++  .++|   +.+++ ++|..+.   .+.|..+.+.|.++|++.++
T Consensus       110 ~~~~~~~~~l~~~~~~~~~~~~p~~~~~~lid~~G~i~~---~~~g~~~~~~l~~~i~~ll~  168 (170)
T 2p5q_A          110 ENASPLYRFLKLGKWGIFGDDIQWNFAKFLVNKDGQVVD---RYYPTTSPLSLERDIKQLLE  168 (170)
T ss_dssp             TTBCHHHHHHHTHHHHTTCSCCCSTTCEEEECTTSCEEE---EECTTSCGGGGHHHHHHHTT
T ss_pred             CchHHHHHHHHhcCCCccCCcccccccEEEECCCCCEEE---eeCCCCCHHHHHHHHHHHhh
Confidence                           23  5678   77777 7776654   67788888899999988764

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=98.52  E-value=1.4e-07  Score=78.79  Aligned_cols=88  Identities=14%  Similarity=0.105  Sum_probs=67.7

Q ss_pred             CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCC-----------------cc-----------c---
Q 013976          296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT-----------------NE-----------H---  344 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~-----------------~~-----------~---  344 (432)
                      .++++||.||++||++|+ ..|.+.++...+++. ++.++.|+++.                 ..           .   
T Consensus        31 ~Gk~vll~F~a~wC~~C~-~~~~l~~l~~~~~~~-~v~vv~vs~d~~~~~~~d~~~~~~~~~~~~~~~~~p~~~d~d~~~  108 (171)
T 3cmi_A           31 KGKVVLIVNVASKCGFTP-QYKELEALYKRYKDE-GFTIIGFPCNQFGHQEPGSDEEIAQFCQLNYGVTFPIMKKIDVNG  108 (171)
T ss_dssp             TTCEEEEEEEESSSCCHH-HHHHHHHHHHHHGGG-TEEEEEEEECSCC------------------CCCSCBBCCCBSSS
T ss_pred             CCCEEEEEEEecCCCcch-hHHHHHHHHHHhccC-CeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCceEEeeccCCC
Confidence            468999999999999999 999999999999873 58888887631                 00           0   


Q ss_pred             ------------ccCCCCCCc------eEEEE-eCCCcccCceeccCCCCHHHHHHHHHhcCC
Q 013976          345 ------------HRAKSDGFP------TILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNAS  388 (432)
Q Consensus       345 ------------~~~~i~~~P------~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  388 (432)
                                  ..+++.++|      +.+++ ++|..+.   .+.|..+.+.|.+.|++.++
T Consensus       109 ~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~lid~~G~i~~---~~~g~~~~~~l~~~i~~ll~  168 (171)
T 3cmi_A          109 GNEDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDKKGKVYE---RYSSLTKPSSLSETIEELLK  168 (171)
T ss_dssp             TTBCHHHHHHHHHSCCSSSCCSCCSTTCEEEECSSSCEEE---EECTTSCGGGGHHHHHHHHT
T ss_pred             ccchHHHHHHHhccCCcCCCCcccccceEEEECCCCCEEE---EeCCCCCHHHHHHHHHHHHH
Confidence                        024677899      77666 7776654   67788888889998888764

>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A

Probab=98.52  E-value=1e-07  Score=79.31  Aligned_cols=89  Identities=9%  Similarity=-0.031  Sum_probs=66.9

Q ss_pred             CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCc------c---cc---------------------
Q 013976          296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN------E---HH---------------------  345 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~------~---~~---------------------  345 (432)
                      .++++||.||++||++|....|.+.++...+++. ++.++.|+++..      .   ..                     
T Consensus        30 ~gk~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~-~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  108 (169)
T 2v1m_A           30 RGHVCLIVNVACKCGATDKNYRQLQEMHTRLVGK-GLRILAFPCNQFGGQEPWAEAEIKKFVTEKYGVQFDMFSKIKVNG  108 (169)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG-TEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSEEBCCCCCSS
T ss_pred             CCCEEEEEEeeccCCchHHHHHHHHHHHHHhhcC-CeEEEEEECCccCCCCCCCHHHHHHHHHHhcCCCCceEEEEeecC
Confidence            4689999999999999999999999999999863 689999987530      0   00                     


Q ss_pred             -----cC--------C-----CCCCceEEEE-eCCCcccCceeccCCCCHHHHHHHHHhcCC
Q 013976          346 -----RA--------K-----SDGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNAS  388 (432)
Q Consensus       346 -----~~--------~-----i~~~P~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  388 (432)
                           .+        +     +..+|+++++ ++|..+.   .+.|..+.+.|.+.|++.++
T Consensus       109 ~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lid~~G~i~~---~~~g~~~~~~l~~~i~~ll~  167 (169)
T 2v1m_A          109 SDADDLYKFLKSRQHGTLTNNIKWNFSKFLVDRQGQPVK---RYSPTTAPYDIEGDIMELLE  167 (169)
T ss_dssp             TTSCHHHHHHHHHSCCSSSCSCCSTTCEEEECTTSCEEE---EECTTSCGGGGHHHHHHHHH
T ss_pred             ccccHHHHHHHhhcCCccCCcccccceEEEECCCCCEEE---EcCCCCCHHHHHHHHHHHhc
Confidence                 00        2     3445888777 6676654   67787788888888887654

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=98.49  E-value=1.7e-07  Score=79.85  Aligned_cols=89  Identities=12%  Similarity=0.040  Sum_probs=69.7

Q ss_pred             CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCc-----------------------------cc--
Q 013976          296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN-----------------------------EH--  344 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-----------------------------~~--  344 (432)
                      .++++||.||++||++|....|.+.++...+++. ++.++.|+++..                             +.  
T Consensus        47 ~Gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~-~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~D~~~  125 (190)
T 2vup_A           47 KGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQ-GFTVLAFPCNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNG  125 (190)
T ss_dssp             TTSCEEEEEECSSSTTHHHHHHHHHHHHHHHGGG-TCEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCBSSS
T ss_pred             CCCEEEEEEecCCCCccHHHHHHHHHHHHHHhcC-CeEEEEEEcCccCCCCCCCHHHHHHHHHHhcCCCeEEEeecccCc
Confidence            4689999999999999999999999999999863 588888887620                             00  


Q ss_pred             c------------cCCCCCCc------eEEEE-eCCCcccCceeccCCCCHHHHHHHHHhcCC
Q 013976          345 H------------RAKSDGFP------TILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNAS  388 (432)
Q Consensus       345 ~------------~~~i~~~P------~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  388 (432)
                      .            .+++.++|      +.+++ ++|+.+.   .+.|..+.+.|.+.|++.++
T Consensus       126 ~~~~~~~~~l~~~~~~v~~~P~i~~~~~~~lid~~G~i~~---~~~g~~~~~~l~~~i~~ll~  185 (190)
T 2vup_A          126 ENAHPLYEYMKKTKPGILKTKAIKWNFTSFLIDRDGVPVE---RFSPGASVKDIEKKLIPLLE  185 (190)
T ss_dssp             TTBCHHHHHHHHHSCCGGGCCSCCSTTCEEEECTTSCEEE---EECTTCCHHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHhhcCCcCCCccccccceEEEECCCCcEEE---EECCCCCHHHHHHHHHHHHh
Confidence            0            13667788      66666 7777654   67788899999999988764

>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}

Probab=98.48  E-value=3.2e-07  Score=77.51  Aligned_cols=87  Identities=10%  Similarity=-0.052  Sum_probs=65.3

Q ss_pred             CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCc----------------------------cc--c
Q 013976          296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN----------------------------EH--H  345 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~----------------------------~~--~  345 (432)
                      .++++||.||++||++|....|.+.++...+++. ++.++.|+++..                            +.  .
T Consensus        46 ~gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~-~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  124 (183)
T 2obi_A           46 RGFVCIVTNVASQCGKTEVNYTQLVDLHARYAEC-GLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGD  124 (183)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG-TEEEEEEECCCSTTCCCSCHHHHHHHHHTTTCCSEEBCCCCCSST
T ss_pred             CCCEEEEEEeCCCCCCcHHHHHHHHHHHHHHhcC-CeEEEEEECCCCCCCCCCCHHHHHHHHHHcCCCceEEeeeccCCc
Confidence            4689999999999999999999999999999863 689999987520                            00  0


Q ss_pred             ----cC----------C-----CCCCceEEEE-eCCCcccCceeccCCCCHHHHHHHHHhc
Q 013976          346 ----RA----------K-----SDGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKN  386 (432)
Q Consensus       346 ----~~----------~-----i~~~P~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~  386 (432)
                          .+          +     +..+|+++++ ++|..+.   .+.|..+.+.|.+.|++.
T Consensus       125 ~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~---~~~g~~~~~~l~~~i~~l  182 (183)
T 2obi_A          125 DAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVK---RYGPMEEPLVIEKDLPHY  182 (183)
T ss_dssp             TSCHHHHHHHTSTTTCCSSSSSCCSTTCEEEECTTSCEEE---EECTTSCTHHHHTTSGGG
T ss_pred             chhHHHHHhhccCCCCCcccccccccceEEEECCCCCEEE---EeCCCCCHHHHHHHHHHh
Confidence                01          2     3345998888 6676654   677888888888877654

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=97.87  E-value=1.6e-08  Score=80.33  Aligned_cols=102  Identities=7%  Similarity=0.076  Sum_probs=81.3

Q ss_pred             CchhhhccCCCcceEEEEEeC-cchhhhHHHH---HHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEe
Q 013976          159 ENAPSVFESPIKNQLLLFAVS-NDSEKLLPVF---EEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTG  234 (432)
Q Consensus       159 ~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~---~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~  234 (432)
                      +.+......++++++.||++| +.|+.+.+.+   .++++.+.+++.|+.+|++... ...+++.|++.+.  |++++++
T Consensus        10 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-~~~~~~~~~v~~~--Pt~~~~d   86 (130)
T 2lst_A           10 EALALAQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVDTPE-GQELARRYRVPGT--PTFVFLV   86 (130)
Confidence            334444456667888899999 9999999999   9999999888999999996433 6688999999988  9999986


Q ss_pred             CCCCc---eecCCCCCCHHHHHHHHHHHhcCC
Q 013976          235 NDDAK---KHILDGELTLDKIKTFGEDFLEGK  263 (432)
Q Consensus       235 ~~~~~---~y~~~~~~~~~~i~~fi~~~~~g~  263 (432)
                      ..+++   ...+.|..+.+.|.++++.++.+.
T Consensus        87 ~~~G~~~~~~~~~G~~~~~~l~~~l~~~~~~~  118 (130)
T 2lst_A           87 PKAGAWEEVGRLFGSRPRAEFLKELRQVCVKG  118 (130)
Confidence            43333   455788889999999999987643

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=98.47  E-value=8e-07  Score=71.87  Aligned_cols=104  Identities=13%  Similarity=0.153  Sum_probs=81.2

Q ss_pred             CCCchhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCC------------------------cc
Q 013976          157 TRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDN------------------------ED  211 (432)
Q Consensus       157 ~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~------------------------~~  211 (432)
                      +.+.+..-...+++.++.||++| +.|+...+.+.++++++.+++.|+.++++.                        .+
T Consensus        18 ~g~~~~~~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   97 (148)
T 2b5x_A           18 NGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVD   97 (148)
T ss_dssp             SCCCCHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEEC
T ss_pred             cCcccchhhcCCCEEEEEEEcCCCHHHHHHhHHHHHHHHHhcCCcEEEEEEcCCCccccCHHHHHHHHHHcCCCcceEEC
Confidence            34444333335667788899999 999999999999999999889999998653                        11


Q ss_pred             cccchhhhhCCCCCCCcEEEEEeCCCCceecCCCCCCHHHHHHHHHHHhcC
Q 013976          212 VGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEG  262 (432)
Q Consensus       212 ~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g  262 (432)
                      ....+++.||+...  |++++++.++...+.+.|..+.+.+.++++..+.+
T Consensus        98 ~~~~~~~~~~v~~~--P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~~  146 (148)
T 2b5x_A           98 SDHALTDAFENEYV--PAYYVFDKTGQLRHFQAGGSGMKMLEKRVNRVLAE  146 (148)
T ss_dssp             SSCHHHHHTCCCCS--SEEEEECTTCBEEEEEESCSTTHHHHHHHHHHHTT
T ss_pred             CchhHHHHhCCCCC--CEEEEECCCCcEEEEecCCCCHHHHHHHHHHHHhc
Confidence            14578899999887  99999976655566677888999999999998763

>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=98.46  E-value=4e-07  Score=76.78  Aligned_cols=88  Identities=13%  Similarity=0.060  Sum_probs=67.2

Q ss_pred             CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCc-------cc------cc----------------
Q 013976          296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN-------EH------HR----------------  346 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-------~~------~~----------------  346 (432)
                      .++++||.||++||++|....|.+.+++..+++. ++.++.|+++..       ..      .+                
T Consensus        48 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~-~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~~p~~~~~d~~g  126 (181)
T 2p31_A           48 RGSVSLVVNVASECGFTDQHYRALQQLQRDLGPH-HFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTG  126 (181)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG-TEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCCCSS
T ss_pred             CCCEEEEEEeccCCCCcHHHHHHHHHHHHHhhcC-CEEEEEEECcCCCCCCCCCHHHHHHHHHhhcCCCceeEeecccCC
Confidence            4689999999999999999999999999999873 699999987530       00      01                


Q ss_pred             --------CCCCCCc-------eEEEE-eCCCcccCceeccCCCCHHHHHHHHHhcC
Q 013976          347 --------AKSDGFP-------TILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNA  387 (432)
Q Consensus       347 --------~~i~~~P-------~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  387 (432)
                              +.+..+|       +.+++ ++|..+.   .+.|..+.+.|.+.|++.+
T Consensus       127 ~~~~~~~~~~~~~~P~~~~~~~~~~lid~~G~i~~---~~~g~~~~~~l~~~i~~ll  180 (181)
T 2p31_A          127 TGAHPAFKYLAQTSGKEPTWNFWKYLVAPDGKVVG---AWDPTVSVEEVRPQITALV  180 (181)
T ss_dssp             TTSCHHHHHHHHHHSCCCCSTTCEEEECTTSCEEE---EECTTSCHHHHHHHHHTTC
T ss_pred             ccchhhhhhhhhcCCCccccceeEEEEcCCCCEEE---EeCCCCCHHHHHHHHHHHh
Confidence                    1144578       55555 7777654   6788889999999998765

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A

Probab=98.45  E-value=1.7e-07  Score=68.16  Aligned_cols=73  Identities=15%  Similarity=0.164  Sum_probs=55.8

Q ss_pred             EEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCcc-----c-ccCC--CCCCceEEEEeCCCcccCceeccC
Q 013976          301 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE-----H-HRAK--SDGFPTILFFPAGNKSFDPINVDV  372 (432)
Q Consensus       301 lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~-----~-~~~~--i~~~P~i~~~~~g~~~~~~~~y~g  372 (432)
                      +++|+++||++|+.+.+.|.+++..+.+   +.+..+|++.+.     . ..++  +.++|++  |.+|..+      .|
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~---i~~~~vdi~~~~~~~~~l~~~~~~~~~~vP~i--~~~g~~i------~~   71 (85)
T 1ego_A            3 TVIFGRSGCPYCVRAKDLAEKLSNERDD---FQYQYVDIRAEGITKEDLQQKAGKPVETVPQI--FVDQQHI------GG   71 (85)
T ss_dssp             EEEECCTTSTHHHHHHHHHHHHHHHHSS---CEEEEECHHHHTCCSHHHHHHTCCCSCCSCEE--EETTEEE------ES
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHhcCCC---ceEEEEecccChHHHHHHHHHhCCCCceeCeE--EECCEEE------EC
Confidence            6789999999999999999999988754   889999987654     1 3567  8999998  4466432      22


Q ss_pred             CCCHHHHHHHHHhcC
Q 013976          373 DRTVVALYKFLKKNA  387 (432)
Q Consensus       373 ~~~~~~l~~fi~~~~  387 (432)
                         .+.|.+++++..
T Consensus        72 ---~~~l~~~~~~~~   83 (85)
T 1ego_A           72 ---YTDFAAWVKENL   83 (85)
T ss_dssp             ---SHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHhc
Confidence               267888887653

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=98.44  E-value=3.4e-08  Score=71.16  Aligned_cols=59  Identities=14%  Similarity=0.240  Sum_probs=42.7

Q ss_pred             EEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCC-Cccc--ccCCCCCCceEEEEeCCC
Q 013976          300 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT-TNEH--HRAKSDGFPTILFFPAGN  362 (432)
Q Consensus       300 ~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~-~~~~--~~~~i~~~P~i~~~~~g~  362 (432)
                      .+++|+++||++|+.+.+.+++++..+..  .+.+..+|.+ .+..  .++++.++|++++  +|+
T Consensus         3 ~~~~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~gv~~vPt~~i--~g~   64 (80)
T 2k8s_A            3 SKAIFYHAGCPVCVSAEQAVANAIDPSKY--TVEIVHLGTDKARIAEAEKAGVKSVPALVI--DGA   64 (80)
T ss_dssp             EEEEEEECSCHHHHHHHHHHHHHSCTTTE--EEEEEETTTCSSTHHHHHHHTCCEEEEEEE--TTE
T ss_pred             ceEEEeCCCCCchHHHHHHHHHHHHhcCC--eEEEEEecCChhhHHHHHHcCCCcCCEEEE--CCE
Confidence            47889999999999999999988655432  3555555543 1222  5789999999987  554

>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A

Probab=98.43  E-value=5.4e-07  Score=77.79  Aligned_cols=44  Identities=20%  Similarity=0.185  Sum_probs=39.4

Q ss_pred             CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCC
Q 013976          296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT  340 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~  340 (432)
                      .++++||.||++||++|....|.+.+++..|++. ++.++.|+++
T Consensus        46 ~Gk~vlv~FwatwC~~C~~e~p~l~~l~~~~~~~-g~~vv~v~~d   89 (208)
T 2f8a_A           46 RGKVLLIENVASLGGTTVRDYTQMNELQRRLGPR-GLVVLGFPCN   89 (208)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG-TEEEEEEECC
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHccCC-CeEEEEEECC
Confidence            4679999999999999999999999999999863 6899999875

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=98.40  E-value=1.9e-06  Score=68.37  Aligned_cols=91  Identities=19%  Similarity=0.231  Sum_probs=73.7

Q ss_pred             CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCc--------------------ccccchhhhhCCCCC
Q 013976          167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNE--------------------DVGKPVSEYFGITGE  225 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~--------------------~~~~~l~~~~~i~~~  225 (432)
                      .+++.++.||++| +.|+...+.+.+++.++. ++.|+.++++..                    +....+++.||+...
T Consensus        24 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~  102 (136)
T 1zzo_A           24 LGKPAVLWFWAPWCPTCQGEAPVVGQVAASHP-EVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFGVTQQ  102 (136)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHHTTCCSS
T ss_pred             CCCeEEEEEEcCCChhHHHHHHHHHHHHHHcC-CeEEEEEeCCCCHHHHHHHHHHcCCCceEEEEcCCcHHHHHcCCCCC
Confidence            4567788899999 999999999999999998 699999998541                    114577899999887


Q ss_pred             CCcEEEEEeCCCCceecCCCCCCHHHHHHHHHHHhc
Q 013976          226 APKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  261 (432)
Q Consensus       226 ~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  261 (432)
                        |++++++.++... .+.|..+.+.|.++++..++
T Consensus       103 --P~~~~id~~g~i~-~~~g~~~~~~l~~~l~~~l~  135 (136)
T 1zzo_A          103 --PAYAFVDPHGNVD-VVRGRMSQDELTRRVTALTS  135 (136)
T ss_dssp             --SEEEEECTTCCEE-EEESCCCHHHHHHHHHHHC-
T ss_pred             --ceEEEECCCCCEE-EEecCCCHHHHHHHHHHHhc
Confidence              9999997655444 67788899999999998764

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=98.39  E-value=2.2e-06  Score=68.12  Aligned_cols=90  Identities=9%  Similarity=0.138  Sum_probs=73.0

Q ss_pred             CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCc-------------------ccccchhhhhCCCCCC
Q 013976          167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNE-------------------DVGKPVSEYFGITGEA  226 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~-------------------~~~~~l~~~~~i~~~~  226 (432)
                      .+++.++.||++| +.|+...+.+.+++.++. .+.|+.++++..                   +....+++.||+... 
T Consensus        23 ~~k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~-  100 (136)
T 1lu4_A           23 QGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP-AVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNVPWQ-  100 (136)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHTTCCSS-
T ss_pred             CCCEEEEEEECCcChhHHHHHHHHHHHHHHCC-CcEEEEEEcCCCHHHHHHHHHHcCCCceEEECCchhHHHhcCCCCC-
Confidence            4567788899999 999999999999999998 799999998761                   013478899999887 


Q ss_pred             CcEEEEEeCCCCceecCC---CCCCHHHHHHHHHHHh
Q 013976          227 PKVLAYTGNDDAKKHILD---GELTLDKIKTFGEDFL  260 (432)
Q Consensus       227 ~P~i~i~~~~~~~~y~~~---~~~~~~~i~~fi~~~~  260 (432)
                       |++++++.++... .+.   |..+.+.|.+++++++
T Consensus       101 -P~~~lid~~G~i~-~~~~~~g~~~~~~l~~~l~~ll  135 (136)
T 1lu4_A          101 -PAFVFYRADGTST-FVNNPTAAMSQDELSGRVAALT  135 (136)
T ss_dssp             -SEEEEECTTSCEE-EECCSSSCCCHHHHHHHHHHC-
T ss_pred             -CEEEEECCCCcEE-EEEcCCCccCHHHHHHHHHHHh
Confidence             9999997665444 567   8899999999998864

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=98.39  E-value=8.1e-07  Score=72.74  Aligned_cols=92  Identities=12%  Similarity=0.014  Sum_probs=74.4

Q ss_pred             CCCcceEEEE-EeC-cchhhhHHHH---HHHHHhccCceEEEEEecCCcc--------cccchhhhhCCCCCCCcEEEEE
Q 013976          167 SPIKNQLLLF-AVS-NDSEKLLPVF---EEAAKSFKGKLIFVYVQMDNED--------VGKPVSEYFGITGEAPKVLAYT  233 (432)
Q Consensus       167 ~~~~~~i~~~-~~~-~~~~~~~~~~---~~~a~~~~~~i~f~~vd~~~~~--------~~~~l~~~~~i~~~~~P~i~i~  233 (432)
                      .+++++|.|| ++| +.|+.+.+.+   .+++..+..++.++.+|++...        .+..+++.|++.+.  |+++++
T Consensus        46 ~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~~~~~v~vd~~~~~~~~~~~~~~~~~l~~~~~v~~~--Pt~~~~  123 (154)
T 2ju5_A           46 DHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGVHLHMVEVDFPQKNHQPEEQRQKNQELKAQYKVTGF--PELVFI  123 (154)
T ss_dssp             HCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEECCSSCCCCHHHHHHHHHHHHHTTCCSS--SEEEEE
T ss_pred             CCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcCcEEEEEecCccccCCChhhHhhHHHHHHHcCCCCC--CEEEEE
Confidence            4667788888 899 9999999999   7887776667999999997631        12478899999987  999999


Q ss_pred             eCCCCceecCCCCC--CHHHHHHHHHHHhc
Q 013976          234 GNDDAKKHILDGEL--TLDKIKTFGEDFLE  261 (432)
Q Consensus       234 ~~~~~~~y~~~~~~--~~~~i~~fi~~~~~  261 (432)
                      +.++...+.+ |..  +.+.+.++++.++.
T Consensus       124 d~~G~~~~~~-G~~~~~~~~l~~~l~~~l~  152 (154)
T 2ju5_A          124 DAEGKQLARM-GFEPGGGAAYVSKVKSALK  152 (154)
T ss_dssp             CTTCCEEEEE-CCCTTCHHHHHHHHHHHHT
T ss_pred             cCCCCEEEEe-cCCCCCHHHHHHHHHHHHh
Confidence            7665566667 877  89999999999875

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10

Probab=98.38  E-value=4e-07  Score=77.20  Aligned_cols=89  Identities=13%  Similarity=0.090  Sum_probs=69.7

Q ss_pred             CCCcEEEEEe-CCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCc------------------------cc---ccC
Q 013976          296 ESKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN------------------------EH---HRA  347 (432)
Q Consensus       296 ~~~~~lv~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~------------------------~~---~~~  347 (432)
                      .++++||.|| ++||++|....+.+.+++..+++. ++.++.|+++..                        ..   ..|
T Consensus        30 ~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~-~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  108 (187)
T 1we0_A           30 KGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKL-GVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTISRQF  108 (187)
T ss_dssp             SSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHT-TEEEEEEESSCHHHHHHHHHSCHHHHTCCSEEEECTTCHHHHHT
T ss_pred             CCCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHc-CCEEEEEECCCHHHHHHHHHHhccccCCCceEEECCchHHHHHh
Confidence            3589999999 999999999999999999999863 688888887641                        11   357


Q ss_pred             CCC------CCceEEEE-eCCCcccCceeccCC----CCHHHHHHHHHhcCC
Q 013976          348 KSD------GFPTILFF-PAGNKSFDPINVDVD----RTVVALYKFLKKNAS  388 (432)
Q Consensus       348 ~i~------~~P~i~~~-~~g~~~~~~~~y~g~----~~~~~l~~fi~~~~~  388 (432)
                      ++.      .+|+++++ ++|..+.   .+.|.    .+.+.|.+.|++...
T Consensus       109 ~v~~~~~g~~~P~~~lid~~G~i~~---~~~g~~~~~~~~~~l~~~l~~l~~  157 (187)
T 1we0_A          109 DVLNEETGLADRGTFIIDPDGVIQA---IEINADGIGRDASTLINKVKAAQY  157 (187)
T ss_dssp             TCEETTTTEECEEEEEECTTSBEEE---EEEECTTSCCCTTHHHHHHHHHHH
T ss_pred             CCCcCCCCceeeEEEEECCCCeEEE---EEecCCCCCCCHHHHHHHHHHHhh
Confidence            887      89999999 6666543   45453    378889999887764

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=98.37  E-value=5.6e-07  Score=76.88  Aligned_cols=88  Identities=14%  Similarity=0.138  Sum_probs=69.8

Q ss_pred             CCcEEEEEe-CCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCc------------------------cc---ccCC
Q 013976          297 SKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN------------------------EH---HRAK  348 (432)
Q Consensus       297 ~~~~lv~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~------------------------~~---~~~~  348 (432)
                      ++++||.|| ++||++|....+.+.++...++.. ++.++.|+++..                        ..   ..|+
T Consensus        45 gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~-~v~vv~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  123 (195)
T 2bmx_A           45 GKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDR-DAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAG  123 (195)
T ss_dssp             TCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTT-TEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHT
T ss_pred             CCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHHHhccccCCceeEEeCCchHHHHHhC
Confidence            579999999 999999999999999999999863 688888888641                        01   2468


Q ss_pred             CC-----CCceEEEE-eCCCcccCceeccCC----CCHHHHHHHHHhcCC
Q 013976          349 SD-----GFPTILFF-PAGNKSFDPINVDVD----RTVVALYKFLKKNAS  388 (432)
Q Consensus       349 i~-----~~P~i~~~-~~g~~~~~~~~y~g~----~~~~~l~~fi~~~~~  388 (432)
                      +.     .+|+++++ ++|..+.   .+.|.    .+.+.|.+.|++...
T Consensus       124 v~~~~g~~~P~~~lid~~G~i~~---~~~g~~~~~~~~~~l~~~l~~l~~  170 (195)
T 2bmx_A          124 VLNADGVADRVTFIVDPNNEIQF---VSATAGSVGRNVDEVLRVLDALQS  170 (195)
T ss_dssp             CBCTTSSBCEEEEEECTTSBEEE---EEEECTTCCCCHHHHHHHHHHHHC
T ss_pred             CcccCCCccceEEEEcCCCeEEE---EEecCCCCCCCHHHHHHHHHHHhh
Confidence            88     89999999 5665543   44453    378999999998876

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A

Probab=98.36  E-value=5.7e-07  Score=74.06  Aligned_cols=85  Identities=14%  Similarity=0.097  Sum_probs=63.7

Q ss_pred             CcEEEEEe-CCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCc----------------------cc---ccCCCC-
Q 013976          298 KDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN----------------------EH---HRAKSD-  350 (432)
Q Consensus       298 ~~~lv~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~----------------------~~---~~~~i~-  350 (432)
                      ++++|.|| ++||++|....+.+.+++..+++. ++.++.|+++..                      ..   ..|++. 
T Consensus        37 ~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~-~~~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~  115 (160)
T 1xvw_A           37 KNVLLVFFPLAFTGICQGELDQLRDHLPEFEND-DSAALAISVGPPPTHKIWATQSGFTFPLLSDFWPHGAVSQAYGVFN  115 (160)
T ss_dssp             CEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSS-SEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTTTTHHHHHTTCEE
T ss_pred             CCEEEEEECCCCCCchHHHHHHHHHHHHHHHHC-CcEEEEEeCCCHHHHHHHHHhcCCCceEEecCCcChHHHHHcCCcc
Confidence            48999998 999999999999999999998753 688888887641                      11   467887 


Q ss_pred             ---CCc--eEEEE-eCCCcccCceeccCC----CCHHHHHHHHHhc
Q 013976          351 ---GFP--TILFF-PAGNKSFDPINVDVD----RTVVALYKFLKKN  386 (432)
Q Consensus       351 ---~~P--~i~~~-~~g~~~~~~~~y~g~----~~~~~l~~fi~~~  386 (432)
                         ++|  +++++ ++|..+.   .+.|.    ...+.+++.|++.
T Consensus       116 ~~~~~p~~~~~lid~~G~i~~---~~~g~~~~~~~~~~l~~~l~~l  158 (160)
T 1xvw_A          116 EQAGIANRGTFVVDRSGIIRF---AEMKQPGEVRDQRLWTDALAAL  158 (160)
T ss_dssp             TTTTEECSEEEEECTTSBEEE---EEECCTTCCCCHHHHHHHHHHT
T ss_pred             ccCCCeeeeEEEECCCCeEEE---EEecCCCCCCCHHHHHHHHHHh
Confidence               889  66666 6666543   44453    3567888877754

>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}

Probab=98.34  E-value=2.1e-07  Score=70.41  Aligned_cols=93  Identities=10%  Similarity=0.061  Sum_probs=73.2

Q ss_pred             CCCchhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccc----hhhhhCCC-CCCCcEE
Q 013976          157 TRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKP----VSEYFGIT-GEAPKVL  230 (432)
Q Consensus       157 ~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~----l~~~~~i~-~~~~P~i  230 (432)
                      +.+.++.++..+.+.++.++++| +.|+.+.+.+++++..  +++.|+.+|.++   +++    ++..+||. ..  |++
T Consensus        13 s~e~f~~ii~~~~~vvi~khatwCgpc~~~~~~~e~~~~~--~~v~~~~vdVde---~r~~Sn~IA~~~~V~h~s--Pq~   85 (112)
T 3iv4_A           13 SIDQFEQVIEENKYVFVLKHSETCPISANAYDQFNKFLYE--RDMDGYYLIVQQ---ERDLSDYIAKKTNVKHES--PQA   85 (112)
T ss_dssp             SHHHHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHH--HTCCEEEEEGGG---GHHHHHHHHHHHTCCCCS--SEE
T ss_pred             CHHHHHHHHhcCCCEEEEEECCcCHhHHHHHHHHHHHhcc--CCceEEEEEeec---CchhhHHHHHHhCCccCC--CeE
Confidence            44557777776777788888999 9999999999999985  569999999998   445    79999998 46  999


Q ss_pred             EEEeCCCCceecCCCCCCHHHHHHHH
Q 013976          231 AYTGNDDAKKHILDGELTLDKIKTFG  256 (432)
Q Consensus       231 ~i~~~~~~~~y~~~~~~~~~~i~~fi  256 (432)
                      +++.+++.....--+.++.+.|.+.+
T Consensus        86 il~k~G~~v~~~SH~~I~~~~l~~~~  111 (112)
T 3iv4_A           86 FYFVNGEMVWNRDHGDINVSSLAQAE  111 (112)
T ss_dssp             EEEETTEEEEEEEGGGCSHHHHHHHT
T ss_pred             EEEECCEEEEEeeccccCHHHHHHhh
Confidence            99977753333345678988887765

>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10

Probab=98.34  E-value=4.5e-07  Score=77.70  Aligned_cols=88  Identities=8%  Similarity=0.069  Sum_probs=68.5

Q ss_pred             CCCcEEEEEe-CCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCc---------------------------cc---
Q 013976          296 ESKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN---------------------------EH---  344 (432)
Q Consensus       296 ~~~~~lv~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~---------------------------~~---  344 (432)
                      .++++||.|| ++||++|....|.+.+++..+++. ++.++.|+++..                           ..   
T Consensus        32 ~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~-~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  110 (198)
T 1zof_A           32 GKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEK-GFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSIS  110 (198)
T ss_dssp             CSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHT-TEEEEEEESSCHHHHHHHHTSCGGGTCCCCCSSCEEECTTSHHH
T ss_pred             CCCcEEEEEECCCCCCchHHHHHHHHHHHHHHHHc-CCEEEEEECCCHHHHHHHHHhhhhcccccCceeEEEECCchHHH
Confidence            3579999999 999999999999999999999763 688888887641                           01   


Q ss_pred             ccCCCC-----CCceEEEE-eCCCcccCceeccCCC----CHHHHHHHHHhcC
Q 013976          345 HRAKSD-----GFPTILFF-PAGNKSFDPINVDVDR----TVVALYKFLKKNA  387 (432)
Q Consensus       345 ~~~~i~-----~~P~i~~~-~~g~~~~~~~~y~g~~----~~~~l~~fi~~~~  387 (432)
                      ..|++.     .+|+++++ ++|..+.   .+.|..    +.+.|.+.|++..
T Consensus       111 ~~~~v~~~~g~~~P~~~lid~~G~i~~---~~~g~~~~~~~~~~l~~~l~~l~  160 (198)
T 1zof_A          111 RDYDVLFEEAIALRGAFLIDKNMKVRH---AVINDLPLGRNADEMLRMVDALL  160 (198)
T ss_dssp             HHTTCEETTTEECEEEEEEETTTEEEE---EEEESSSCCCHHHHHHHHHHHHH
T ss_pred             HHhCCcccCCcccceEEEECCCCEEEE---EEecCCCCCCCHHHHHHHHHHHH
Confidence            357888     99999999 5665543   444533    6889999988775

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=98.33  E-value=1.4e-06  Score=72.76  Aligned_cols=102  Identities=12%  Similarity=0.098  Sum_probs=76.7

Q ss_pred             ecCCCchhhhc----cCCCcceEEEEEeC-cchhhhHHHH---HHHHHhccCceEEEEEecCCcccccch----------
Q 013976          155 IFTRENAPSVF----ESPIKNQLLLFAVS-NDSEKLLPVF---EEAAKSFKGKLIFVYVQMDNEDVGKPV----------  216 (432)
Q Consensus       155 ~l~~~~~~~~~----~~~~~~~i~~~~~~-~~~~~~~~~~---~~~a~~~~~~i~f~~vd~~~~~~~~~l----------  216 (432)
                      ..+..++...+    ..+++++|.||++| +.|+.+.+.+   .++.+.+++++.|+.+|++..   ..+          
T Consensus        30 ~~~~~~~~~~~~~a~~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~~~~~~v~v~~d~~---~~~~~~~~~~~~~  106 (172)
T 3f9u_A           30 HAKFDDYDLGMEYARQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINNDYVLITLYVDNK---TPLTEPVKIMENG  106 (172)
T ss_dssp             CCCBSCHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEETTCC---CEEEEEEEEEETT
T ss_pred             ccchhhHHHHHHHHHHcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcCCEEEEEEecCcc---cccchhhhhhhcc
Confidence            34555555544    56778888999999 9999974444   556666666799999999863   233          


Q ss_pred             ----------------hhhhCCCCCCCcEEEEEeCCCCceecCCCCCC-HHHHHHHHHHHhc
Q 013976          217 ----------------SEYFGITGEAPKVLAYTGNDDAKKHILDGELT-LDKIKTFGEDFLE  261 (432)
Q Consensus       217 ----------------~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~~~-~~~i~~fi~~~~~  261 (432)
                                      ++.||+.+.  |++++++.++.....+.|..+ .+.+.+|+++.+.
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~v~~~--Pt~~lid~~G~~~~~~~G~~~~~~~l~~~l~~~l~  166 (172)
T 3f9u_A          107 TERTLRTVGDKWSYLQRVKFGANAQ--PFYVLIDNEGNPLNKSYAYDEDISKYINFLQTGLE  166 (172)
T ss_dssp             EEEEEEEHHHHHHHHHHHHHSCCCS--SEEEEECTTSCBSSCCBCSCCCHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhhHHHHHHcCCCCc--ceEEEECCCCCEEeeccCCCCCHHHHHHHHHHHHH
Confidence                            688999987  999999766655566678888 9999999988764

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6

Probab=98.32  E-value=3.6e-07  Score=79.27  Aligned_cols=102  Identities=11%  Similarity=0.105  Sum_probs=79.1

Q ss_pred             CCceeec-CCCchhhhccCC---CcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCC
Q 013976          150 LPLVTIF-TRENAPSVFESP---IKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITG  224 (432)
Q Consensus       150 ~p~v~~l-~~~~~~~~~~~~---~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~  224 (432)
                      ...|.++ +.++|...+...   .+++|.||++| ++|+.+.+.|.++|.+|. .+.|+.+|++    ++.++..|++..
T Consensus        98 ~g~v~~i~~~~~f~~~v~~~~~~k~vvV~F~a~wC~~C~~l~p~l~~la~~~~-~v~f~~vd~~----~~~l~~~~~i~~  172 (217)
T 2trc_P           98 YGFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYP-MVKFCKIRAS----NTGAGDRFSSDV  172 (217)
T ss_dssp             CCSEEECCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTCT-TSEEEEEEHH----HHTCSTTSCGGG
T ss_pred             CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCccHHHHHHHHHHHHHHCC-CeEEEEEECC----cHHHHHHCCCCC
Confidence            3457777 778887766433   67788899999 999999999999999996 5999999997    346788999998


Q ss_pred             CCCcEEEEEeCCCCceecCCCC-------CCHHHHHHHHHHH
Q 013976          225 EAPKVLAYTGNDDAKKHILDGE-------LTLDKIKTFGEDF  259 (432)
Q Consensus       225 ~~~P~i~i~~~~~~~~y~~~~~-------~~~~~i~~fi~~~  259 (432)
                      .  |+++++.++. ....+.|.       ++.+.|..|+..+
T Consensus       173 ~--PTl~~~~~G~-~v~~~~G~~~~~g~~~~~~~Le~~L~~~  211 (217)
T 2trc_P          173 L--PTLLVYKGGE-LISNFISVAEQFAEDFFAADVESFLNEY  211 (217)
T ss_dssp             C--SEEEEEETTE-EEEEETTGGGGSCSSCCHHHHHHHHHTT
T ss_pred             C--CEEEEEECCE-EEEEEeCCcccCcccCCHHHHHHHHHHc
Confidence            8  9999887543 22334443       4468999999874

>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A

Probab=98.32  E-value=1.5e-06  Score=73.22  Aligned_cols=45  Identities=13%  Similarity=0.044  Sum_probs=40.0

Q ss_pred             CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCC
Q 013976          296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT  341 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~  341 (432)
                      .++.+||.||++||++|....|.+.+++..|++. ++.++.|+++.
T Consensus        37 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~-~~~vi~is~d~   81 (180)
T 3kij_A           37 KGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPS-HFSVLAFPCNQ   81 (180)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHTTT-SEEEEEEECCC
T ss_pred             CCCEEEEEEEecCCCCcHHHHHHHHHHHHHhccC-CeEEEEEECCc
Confidence            4679999999999999999999999999999874 68899888754

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=98.31  E-value=4.2e-06  Score=69.02  Aligned_cols=93  Identities=15%  Similarity=0.197  Sum_probs=73.9

Q ss_pred             CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCc-eEEEEEecCCcccccchhhhh------------------------
Q 013976          167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNEDVGKPVSEYF------------------------  220 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~-i~f~~vd~~~~~~~~~l~~~~------------------------  220 (432)
                      .+++.++.||++| +.|....+.+.+++.++.+. +.|+.++++..   ...++.+                        
T Consensus        33 ~gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~~~v~~v~v~~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (165)
T 3or5_A           33 KGKAYIVNFFATWCPPCRSEIPDMVQVQKTWASRGFTFVGIAVNEQ---LPNVKNYMKTQGIIYPVMMATPELIRAFNGY  109 (165)
T ss_dssp             TTCEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTTEEEEEEECSCC---HHHHHHHHHHHTCCSCEEECCHHHHHHHHTT
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCC---HHHHHHHHHHcCCCCceEecCHHHHHHHhhh
Confidence            4567788899999 89999999999999999875 99999998863   2344444                        


Q ss_pred             ---CCCCCCCcEEEEEeCCCCceecCCCCCCHHHHHHHHHHHhcCCc
Q 013976          221 ---GITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKL  264 (432)
Q Consensus       221 ---~i~~~~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g~l  264 (432)
                         ++...  |++++++.++...+.+.|..+.+.+.++|+..+....
T Consensus       110 ~~~~i~~~--P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~~~~  154 (165)
T 3or5_A          110 IDGGITGI--PTSFVIDASGNVSGVIVGPRSKADFDRIVKMALGAKA  154 (165)
T ss_dssp             STTCSCSS--SEEEEECTTSBEEEEECSCCCHHHHHHHHHHHHC---
T ss_pred             hccCCCCC--CeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHhhhc
Confidence               77776  9998887766556677898999999999999986443

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=98.29  E-value=5.3e-06  Score=67.50  Aligned_cols=99  Identities=15%  Similarity=0.103  Sum_probs=77.8

Q ss_pred             CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCc-eEEEEEecCCc--------------------ccccchhhhhCCCC
Q 013976          167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNE--------------------DVGKPVSEYFGITG  224 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~-i~f~~vd~~~~--------------------~~~~~l~~~~~i~~  224 (432)
                      .+++.++.||++| +.|+...+.+.++++++.+. +.|+.++.+..                    +....+++.||+..
T Consensus        27 ~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~  106 (153)
T 2l5o_A           27 QGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESVRQYVKDYGLPFTVMYDADKAVGQAFGTQV  106 (153)
T ss_dssp             TTCEEEEEEECTTCTTHHHHHHHHHHHHHHGGGTTEEEEEEECTTSCHHHHHHHHHHTTCCSEEEECSSCHHHHHHTCCS
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCeEEEEEecCCCCHHHHHHHHHHcCCCceEEcCchHHHHHHcCCCc
Confidence            4567788889999 89999999999999999864 77777663210                    01456889999988


Q ss_pred             CCCcEEEEEeCCCCceecCCCCCCHHHHHHHHHHHhcCCcCcc
Q 013976          225 EAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLKPF  267 (432)
Q Consensus       225 ~~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g~l~~~  267 (432)
                      .  |++++++.++...+.+.|..+.+.|.++|+..+.+.-.+-
T Consensus       107 ~--P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~~~~~~~  147 (153)
T 2l5o_A          107 Y--PTSVLIGKKGEILKTYVGEPDFGKLYQEIDTAWRNSDAEG  147 (153)
T ss_dssp             S--SEEEEECSSSCCCEEEESSCCHHHHHHHHHHHHHCCSSCC
T ss_pred             c--CeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHHhhhhcc
Confidence            7  9999987666556667888999999999999998765543

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=98.28  E-value=2.1e-06  Score=69.10  Aligned_cols=88  Identities=16%  Similarity=0.180  Sum_probs=72.9

Q ss_pred             CCCcceEEEEEeC-cchhhhHHHHHHHHHhcc-CceEEEEEecCC-----------------------cccccchhhhhC
Q 013976          167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFK-GKLIFVYVQMDN-----------------------EDVGKPVSEYFG  221 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~-~~i~f~~vd~~~-----------------------~~~~~~l~~~~~  221 (432)
                      .++++++.||++| +.|+...+.+.++++++. ..+.|+.++++.                       .. ...+++.|+
T Consensus        33 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~  111 (145)
T 3erw_A           33 KGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQNQQVVEDFIKANKLTFPIVLDS-KGELMKEYH  111 (145)
T ss_dssp             TTSEEEEEEECSSCHHHHHHHHHHHHHHHHCCCSSEEEEEEECGGGSSCHHHHHHHHHHTTCCSCEEECS-SSHHHHHTT
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEccCCcCCHHHHHHHHHHcCCceeEEEcC-chhHHHhcC
Confidence            5667788899999 899999999999999998 569999998864                       11 447889999


Q ss_pred             CCCCCCcEEEEEeCCCCceecCCCCCCHHHHHHHHH
Q 013976          222 ITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGE  257 (432)
Q Consensus       222 i~~~~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~  257 (432)
                      +...  |++++++.++...+.+.|..+.+.|.++++
T Consensus       112 v~~~--P~~~lid~~G~i~~~~~g~~~~~~l~~~l~  145 (145)
T 3erw_A          112 IITI--PTSFLLNEKGEIEKTKIGPMTAEQLKEWTE  145 (145)
T ss_dssp             CCEE--SEEEEECTTCCEEEEEESCCCHHHHHHHHC
T ss_pred             cCcc--CeEEEEcCCCcEEEEEcCCcCHHHHHHhhC
Confidence            9887  999999776656667789899999998874

>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}

Probab=98.28  E-value=1.4e-06  Score=73.65  Aligned_cols=44  Identities=9%  Similarity=-0.002  Sum_probs=39.3

Q ss_pred             CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCC
Q 013976          296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT  340 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~  340 (432)
                      .++++||.||++||++|....|.+.++...+++. ++.++.|+++
T Consensus        48 ~Gk~vlv~F~atwC~~C~~~~~~l~~l~~~~~~~-~v~vv~is~d   91 (185)
T 2gs3_A           48 RGFVCIVTNVASQGGKTEVNYTQLVDLHARYAEC-GLRILAFPCN   91 (185)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG-TEEEEEEECC
T ss_pred             CCCEEEEEEecCCCCchHHHHHHHHHHHHHhhcC-CeEEEEEECc
Confidence            4589999999999999999999999999999863 6899989875

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=98.28  E-value=4.8e-06  Score=67.69  Aligned_cols=97  Identities=12%  Similarity=0.095  Sum_probs=76.3

Q ss_pred             CCCcceEEEEEeC-cchhhhHHHHHHHHHhccC-ceEEEEEecCCcc---------------------cccchhhhhC--
Q 013976          167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNED---------------------VGKPVSEYFG--  221 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~-~i~f~~vd~~~~~---------------------~~~~l~~~~~--  221 (432)
                      .++++++.||++| +.|....+.+.+++.++++ .+.|+.|+++..+                     ....+++.||  
T Consensus        23 ~gk~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (151)
T 3raz_A           23 KAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQTPVSYPIWRYTGANSRNFMKTYGNT  102 (151)
T ss_dssp             CSSEEEEEEECTTCHHHHHHHHHHHHHHHTSCTTTEEEEEEESSCHHHHHHHHHHSCCSSCEEEECCSCHHHHHHTTTCC
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCChHHHHHHHHHcCCCCceEecCccchHHHHHHhCCc
Confidence            4667788899999 8899999999999999964 5999999886211                     1345677888  


Q ss_pred             CCCCCCcEEEEEeCCCCceecCCCCCCHHHHHHHHHHHhcCCcC
Q 013976          222 ITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLK  265 (432)
Q Consensus       222 i~~~~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g~l~  265 (432)
                      +...  |++++++.++...+.+.|..+.+.|.++++....+.-.
T Consensus       103 v~~~--P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l~~~~~~  144 (151)
T 3raz_A          103 VGVL--PFTVVEAPKCGYRQTITGEVNEKSLTDAVKLAHSKCRE  144 (151)
T ss_dssp             SCCS--SEEEEEETTTTEEEECCSCCCHHHHHHHHHHHHTC---
T ss_pred             cCCC--CEEEEECCCCcEEEEECCCCCHHHHHHHHHHHHHHhhc
Confidence            6665  99989987776777889999999999999998876543

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C

Probab=98.26  E-value=1.3e-06  Score=76.92  Aligned_cols=102  Identities=11%  Similarity=0.103  Sum_probs=79.9

Q ss_pred             CCceeec-CCCchhhhcc---CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCC
Q 013976          150 LPLVTIF-TRENAPSVFE---SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITG  224 (432)
Q Consensus       150 ~p~v~~l-~~~~~~~~~~---~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~  224 (432)
                      ...|.++ +.++|...+.   .+.+++|.||++| ++|+.+.+.|.++|.+|.+ +.|+.||++.    ..++..|++.+
T Consensus       111 ~G~V~ei~s~~~f~~~v~~~~~~k~VvV~Fya~wC~~Ck~l~p~l~~La~~~~~-v~f~kVd~d~----~~l~~~~~I~~  185 (245)
T 1a0r_P          111 YGFVYELESGEQFLETIEKEQKITTIVVHIYEDGIKGCDALNSSLICLAAEYPM-VKFCKIKASN----TGAGDRFSSDV  185 (245)
T ss_dssp             CCSEEECCSHHHHHHHHHSSCTTCEEEEEEECTTSTTHHHHHHHHHHHHHHCTT-SEEEEEEHHH----HCCTTSSCTTT
T ss_pred             CCeEEEeCCHHHHHHHHHHhcCCCEEEEEEECCCChHHHHHHHHHHHHHHHCCC-CEEEEEeCCc----HHHHHHCCCCC
Confidence            3467777 6788877663   3567788899999 9999999999999999987 9999999975    36788999988


Q ss_pred             CCCcEEEEEeCCCCceecCCC-------CCCHHHHHHHHHHH
Q 013976          225 EAPKVLAYTGNDDAKKHILDG-------ELTLDKIKTFGEDF  259 (432)
Q Consensus       225 ~~~P~i~i~~~~~~~~y~~~~-------~~~~~~i~~fi~~~  259 (432)
                      .  |+++++..+. ....+.|       .++.+.|..|+..+
T Consensus       186 ~--PTll~~~~G~-~v~~~vG~~~~~g~~~~~e~Le~~L~~~  224 (245)
T 1a0r_P          186 L--PTLLVYKGGE-LLSNFISVTEQLAEEFFTGDVESFLNEY  224 (245)
T ss_dssp             C--SEEEEEETTE-EEEEETTGGGGSCTTCCHHHHHHHHHTT
T ss_pred             C--CEEEEEECCE-EEEEEeCCcccccccccHHHHHHHHHHc
Confidence            8  9998887543 2122222       36788999999885

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=98.24  E-value=5.1e-06  Score=67.45  Aligned_cols=97  Identities=13%  Similarity=0.178  Sum_probs=76.4

Q ss_pred             CCCcceEEEEEeC-cchhhhHHHHHHHHHhccC-ceEEEEEecCCcc-------------------cccchhhhhCCCCC
Q 013976          167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNED-------------------VGKPVSEYFGITGE  225 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~-~i~f~~vd~~~~~-------------------~~~~l~~~~~i~~~  225 (432)
                      .+++.++.||++| +.|+...+.+.+++.++.+ .+.|+.++++...                   ....+++.||+...
T Consensus        25 ~gk~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  104 (151)
T 2f9s_A           25 KGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSPL  104 (151)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHHTCCSCEEEETTSHHHHHTTCCSS
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCceEEECCchHHHHhcCCCCC
Confidence            4567788889999 9999999999999999986 4889888886420                   02367889999887


Q ss_pred             CCcEEEEEeCCCCceecCCCCCCHHHHHHHHHHHhcCCcC
Q 013976          226 APKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLK  265 (432)
Q Consensus       226 ~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g~l~  265 (432)
                        |++++++.++...+.+.|..+.+.|.++++..+++...
T Consensus       105 --P~~~lid~~G~i~~~~~G~~~~~~l~~~l~~ll~~~~~  142 (151)
T 2f9s_A          105 --PTTFLINPEGKVVKVVTGTMTESMIHDYMNLIKPGETS  142 (151)
T ss_dssp             --CEEEEECTTSEEEEEEESCCCHHHHHHHHHHHSCC---
T ss_pred             --CeEEEECCCCcEEEEEeCCCCHHHHHHHHHHHHhhhhc
Confidence              99988876655556677888999999999999876543

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=98.24  E-value=5.8e-06  Score=67.15  Aligned_cols=95  Identities=14%  Similarity=0.114  Sum_probs=76.8

Q ss_pred             CCCcceEEEEEeC-cchhhhHHHHHHHHHhccC-ceEEEEEecCCcc--------------------cccchhhhhCCCC
Q 013976          167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNED--------------------VGKPVSEYFGITG  224 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~-~i~f~~vd~~~~~--------------------~~~~l~~~~~i~~  224 (432)
                      .+++.++.||++| +.|+...+.+.++++++.+ .+.|+.++++...                    ....+++.||+..
T Consensus        29 ~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  108 (152)
T 2lja_A           29 KGKYIYIDVWATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDKNKKAWENMVTKDQLKGIQLHMGTDRTFMDAYLING  108 (152)
T ss_dssp             TTSEEEEEECCSSCCGGGGTHHHHHHHHHHSTTSSEEEEEEECCSCHHHHHHHHHHHTCCSEEEECSSCTHHHHHTTCCS
T ss_pred             CCCEEEEEEECCcCHhHHHHhHHHHHHHHHhccCCeEEEEEEccCcHHHHHHHHHhcCCCCceeecCcchhHHHHcCcCC
Confidence            3556778888999 9999999999999999987 4999999887631                    0126788899988


Q ss_pred             CCCcEEEEEeCCCCceecCCCCCCHHHHHHHHHHHhcCC
Q 013976          225 EAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGK  263 (432)
Q Consensus       225 ~~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g~  263 (432)
                      .  |++++++.++...+.+.|..+.+.|.++++..+.+.
T Consensus       109 ~--P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~~~~~  145 (152)
T 2lja_A          109 I--PRFILLDRDGKIISANMTRPSDPKTAEKFNELLGLE  145 (152)
T ss_dssp             S--CCEEEECTTSCEEESSCCCTTCHHHHHHHHHHHTCC
T ss_pred             C--CEEEEECCCCeEEEccCCCCCHHHHHHHHHHHhccc
Confidence            7  999999866656666778889999999999988754

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1

Probab=98.23  E-value=7.1e-07  Score=64.20  Aligned_cols=71  Identities=6%  Similarity=0.024  Sum_probs=51.7

Q ss_pred             EEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--c---cCCCCCCceEEEEeCCCcccCceeccCCCC
Q 013976          301 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--H---RAKSDGFPTILFFPAGNKSFDPINVDVDRT  375 (432)
Q Consensus       301 lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~---~~~i~~~P~i~~~~~g~~~~~~~~y~g~~~  375 (432)
                      +++|+++||++|+.+.+.+.++        ++.+..+|++.+..  .   ++++.++|+++  .+|..       .++.+
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~~--------~i~~~~vdi~~~~~~~~~~~~~g~~~vP~~~--~~g~~-------~~g~~   65 (81)
T 1h75_A            3 ITIYTRNDCVQCHATKRAMENR--------GFDFEMINVDRVPEAAEALRAQGFRQLPVVI--AGDLS-------WSGFR   65 (81)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT--------TCCCEEEETTTCHHHHHHHHHTTCCSSCEEE--ETTEE-------EESCC
T ss_pred             EEEEcCCCChhHHHHHHHHHHC--------CCCeEEEECCCCHHHHHHHHHhCCCccCEEE--ECCEE-------EecCC
Confidence            6789999999999999988864        46777889887644  2   47999999983  35532       23467


Q ss_pred             HHHHHHHHHhcCC
Q 013976          376 VVALYKFLKKNAS  388 (432)
Q Consensus       376 ~~~l~~fi~~~~~  388 (432)
                      .+.|.++|.++++
T Consensus        66 ~~~l~~~l~~~~~   78 (81)
T 1h75_A           66 PDMINRLHPAPHA   78 (81)
T ss_dssp             HHHHGGGSCCC--
T ss_pred             HHHHHHHHhcccc
Confidence            7888887766543

>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A

Probab=98.22  E-value=5e-06  Score=69.28  Aligned_cols=91  Identities=11%  Similarity=0.168  Sum_probs=67.4

Q ss_pred             CCCcEEEEEeCCCCh-hhhhhHHHHHHHHHHhcCCC-CEEEEEEeCCCc--cc-------cc------------------
Q 013976          296 ESKDVLLEIYAPWCG-HCQAFEPTYNKLAKHLRGVD-SIVIAKMDGTTN--EH-------HR------------------  346 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~-~c~~~~~~~~~la~~~~~~~-~~~~~~id~~~~--~~-------~~------------------  346 (432)
                      .++++||.||++||. +|....+.+.++...++... ++.++.|+++..  ..       .+                  
T Consensus        32 ~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~d~~~~~~~~~~~~~~~~~~~~~l~d~~~~~  111 (174)
T 1xzo_A           32 KGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKPKQLKKFAANYPLSFDNWDFLTGYSQSE  111 (174)
T ss_dssp             TTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTTSCCCGGGEEEEBCSCHHH
T ss_pred             CCCEEEEEEEcCCCcchhHHHHHHHHHHHHHhhhcCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCCcceEEEeCCCHHH
Confidence            468899999999999 99999999999999987642 488888887631  00       00                  


Q ss_pred             -------------------CCCCCCceEEEE-eCCCcccCceeccCCC--CHHHHHHHHHhcCCC
Q 013976          347 -------------------AKSDGFPTILFF-PAGNKSFDPINVDVDR--TVVALYKFLKKNASI  389 (432)
Q Consensus       347 -------------------~~i~~~P~i~~~-~~g~~~~~~~~y~g~~--~~~~l~~fi~~~~~~  389 (432)
                                         +.+...|+++++ ++|..+.   .+.|..  +.+.|.+.|++.++.
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~~---~~~g~~~~~~~~l~~~l~~ll~~  173 (174)
T 1xzo_A          112 IEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLK---DYNGVENTPYDDIISDVKSASTL  173 (174)
T ss_dssp             HHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEE---EEESSSSCCHHHHHHHHHHHTCC
T ss_pred             HHHHHHhhcCeeEeecCCCCeeeeeeEEEEECCCCeEEE---EEcCCCCCCHHHHHHHHHHHHhc
Confidence                               235668987777 5665543   566754  589999999987653

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.20  E-value=3.3e-05  Score=76.40  Aligned_cols=181  Identities=12%  Similarity=0.136  Sum_probs=124.1

Q ss_pred             HHHHHHhhc--CCeEEEEEecCCC-cchHHHHH-HHhccCCCceEEEeCcHHHHhHcCCCCCCCCCeEEEEecCCCceec
Q 013976           55 DEAERVLTS--ETKVVLGYLNSLV-GSESEVLA-DASRLEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKISY  130 (432)
Q Consensus        55 ~~l~~~~~~--~~~~vv~f~~~~~-~~~~~~f~-~~a~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~i~l~~~~~~~~~~  130 (432)
                      ++|+.++..  +++.++.|.++.. ..+.+.|. +++.+.+.+.+-...+.      . .   ..|++.+.+........
T Consensus         8 ~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~~~------~-~---~~p~~~~~~~~~~~~i~   77 (521)
T 1hyu_A            8 TQLRAYLEKLTKPVELIATLDDSAKSAEIKELLAEIAELSDKVTFKEDNTL------P-V---RKPSFLITNPGSQQGPR   77 (521)
T ss_dssp             HHHHHHHTTCCSCEEEEEECCSSHHHHHHHHHHHHHHTTCTTEEEEECTTS------S-S---CSSEEEEECTTCCCSCE
T ss_pred             HHHHHHHHhCCCCEEEEEEeCCCcchHHHHHHHHHHHHhCCceEEEEcCCc------c-c---CCCEEEEecCCCcceEE
Confidence            556666543  4666666655422 23444554 46777777776443211      0 1   24999999865456678


Q ss_pred             ccCCCCCHHHHHHHHHh----cCCCceeecCCCchhhhccCCCc-ceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEE
Q 013976          131 FADGKFDKSTIADFVFS----NKLPLVTIFTRENAPSVFESPIK-NQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVY  204 (432)
Q Consensus       131 y~~g~~~~~~l~~fi~~----~~~p~v~~l~~~~~~~~~~~~~~-~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~  204 (432)
                      | .|--.-.++.+||..    ...|  ..++.+.+..+.....+ .+.+|+++| ++|+.+.+.++++|..+. ++.+..
T Consensus        78 f-~g~p~g~e~~s~~~~l~~~~~~~--~~~~~~~~~~i~~~~~~~~i~~f~a~~C~~C~~~~~~l~~~a~~~~-~v~~~~  153 (521)
T 1hyu_A           78 F-AGSPLGHEFTSLVLALLWTGGHP--SKEAQSLLEQIRDIDGDFEFETYYSLSCHNCPDVVQALNLMAVLNP-RIKHTA  153 (521)
T ss_dssp             E-ESCCCGGGHHHHHHHHHHHTTCC--CCSCHHHHHHHHHCCSCEEEEEEECTTCSSHHHHHHHHHHHHHHCT-TEEEEE
T ss_pred             E-eccCcchhHHHHHHHHHhhcCCC--CCCCHHHHHHHHhcCCCcceEEEECCCCcCcHHHHHHHHHHHhHcC-ceEEEE
Confidence            8 777666667777654    3333  45677777766433333 456677889 999999999999999987 699999


Q ss_pred             EecCCcccccchhhhhCCCCCCCcEEEEEeCCCCceecCCCCCCHHHHHHHHHHH
Q 013976          205 VQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDF  259 (432)
Q Consensus       205 vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~  259 (432)
                      +|.+.   ++++.+.||+...  |++++  ++  +.. ..|..+.+.|.+|+...
T Consensus       154 vd~~~---~~~~~~~~~i~sv--Pt~~i--~g--~~~-~~G~~~~~~l~~~l~~~  198 (521)
T 1hyu_A          154 IDGGT---FQNEITERNVMGV--PAVFV--NG--KEF-GQGRMTLTEIVAKVDTG  198 (521)
T ss_dssp             EETTT---CHHHHHHTTCCSS--SEEEE--TT--EEE-EESCCCHHHHHHHHCCS
T ss_pred             Eechh---hHHHHHHhCCCcc--CEEEE--CC--EEE-ecCCCCHHHHHHHHhhc
Confidence            99987   6789999999987  99966  22  222 34888999999998764

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=98.17  E-value=8.4e-07  Score=73.47  Aligned_cols=98  Identities=14%  Similarity=0.165  Sum_probs=72.9

Q ss_pred             hhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCce
Q 013976          162 PSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKK  240 (432)
Q Consensus       162 ~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~  240 (432)
                      ......+++++|.||++| +.|+.+.+.|.+++..+...+.|+.||++...  ..++..+++.....|++++++.+....
T Consensus        40 ~~~~~~~k~vlv~F~a~WC~~C~~~~p~l~~~~~~~~~~~~~~~v~~d~~~--~~~~~~~~~~~~~~Pt~~~~d~~G~~~  117 (164)
T 1sen_A           40 KEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEE--EPKDEDFSPDGGYIPRILFLDPSGKVH  117 (164)
T ss_dssp             HHHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGG--SCSCGGGCTTCSCSSEEEEECTTSCBC
T ss_pred             HHHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhcCCeEEEEEecCCc--hHHHHHhcccCCcCCeEEEECCCCCEE
Confidence            334456678899999999 99999999999988777656777888887632  126788888654459999996554444


Q ss_pred             ecCCC----------CCCHHHHHHHHHHHhc
Q 013976          241 HILDG----------ELTLDKIKTFGEDFLE  261 (432)
Q Consensus       241 y~~~~----------~~~~~~i~~fi~~~~~  261 (432)
                      ..+.|          ..+.+.|.++++..+.
T Consensus       118 ~~~~G~~~~~~~~~~~~~~~~l~~~l~~~l~  148 (164)
T 1sen_A          118 PEIINENGNPSYKYFYVSAEQVVQGMKEAQE  148 (164)
T ss_dssp             TTCCCTTSCTTSTTCCCSHHHHHHHHHHHHH
T ss_pred             EEEeCCCCccchhcccCCHHHHHHHHHHHHH
Confidence            44555          3788999999998875

>2l4c_A Endoplasmic reticulum resident protein 27; ERP27, PDI, B domain, peptide binding; NMR {Homo sapiens}

Probab=98.16  E-value=5.2e-06  Score=64.80  Aligned_cols=96  Identities=9%  Similarity=0.130  Sum_probs=74.6

Q ss_pred             eEEEe-cccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCcccccCCCCCCceEEEEe
Q 013976          281 VKIVV-GNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFP  359 (432)
Q Consensus       281 v~~l~-~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~~~~~i~~~P~i~~~~  359 (432)
                      +..|+ ..++++++ .....++|-|+++||++|   .+.|.++|..+ +  .+.|+..+. ..-...++++ .|++++|+
T Consensus        23 ~~~i~s~~e~e~fi-~~~~v~VVGfF~~~~~~~---~~~F~~~A~~~-~--d~~F~~t~~-~~v~~~~~v~-~~~vvlfk   93 (124)
T 2l4c_A           23 PTWLTDVPAAMEFI-AATEVAVIGFFQDLEIPA---VPILHSMVQKF-P--GVSFGISTD-SEVLTHYNIT-GNTICLFR   93 (124)
T ss_dssp             CEECCSHHHHHHHH-HTSSEEEEEECSCTTSTH---HHHHHHHHHHC-T--TSEEEEECC-HHHHHHTTCC-SSCEEEEE
T ss_pred             ceEcCCHHHHHHHH-hcCCCEEEEEECCCCChh---HHHHHHHHHhC-C--CceEEEECh-HHHHHHcCCC-CCeEEEEE
Confidence            44454 36677766 556778999999999999   56899999999 5  599998863 2222678887 89999999


Q ss_pred             CCCcccCceeccC----CCCHHHHHHHHHhcC
Q 013976          360 AGNKSFDPINVDV----DRTVVALYKFLKKNA  387 (432)
Q Consensus       360 ~g~~~~~~~~y~g----~~~~~~l~~fi~~~~  387 (432)
                      ....  +.+.|.|    ..+.+.|.+||..+.
T Consensus        94 kfde--~~~~~~g~~~~~~~~~~L~~FI~~n~  123 (124)
T 2l4c_A           94 LVDN--EQLNLEDEDIESIDATKLSRFIEINS  123 (124)
T ss_dssp             TTTT--EEEEECHHHHTTCCHHHHHHHHHHHC
T ss_pred             cCCC--CceeecCcccCCCCHHHHHHHHHHhc
Confidence            8764  4567886    789999999999864

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=98.13  E-value=9.8e-06  Score=57.32  Aligned_cols=72  Identities=18%  Similarity=0.170  Sum_probs=58.8

Q ss_pred             eEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCceecCCCCC-CH
Q 013976          172 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGEL-TL  249 (432)
Q Consensus       172 ~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~~-~~  249 (432)
                      .+.||++| +.|+.+.+.+++++.++.+++.++.+|      ...+++.||+.+.  |++++  ++  +... .|.. +.
T Consensus         3 ~v~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~------~~~~~~~~~v~~~--Pt~~~--~G--~~~~-~G~~~~~   69 (77)
T 1ilo_A            3 KIQIYGTGCANCQMLEKNAREAVKELGIDAEFEKIK------EMDQILEAGLTAL--PGLAV--DG--ELKI-MGRVASK   69 (77)
T ss_dssp             EEEEECSSSSTTHHHHHHHHHHHHHTTCCEEEEEEC------SHHHHHHHTCSSS--SCEEE--TT--EEEE-CSSCCCH
T ss_pred             EEEEEcCCChhHHHHHHHHHHHHHHcCCceEEEEec------CHHHHHHCCCCcC--CEEEE--CC--EEEE-cCCCCCH
Confidence            47789999 999999999999999999889999998      2367899999988  99977  22  3222 2876 89


Q ss_pred             HHHHHHH
Q 013976          250 DKIKTFG  256 (432)
Q Consensus       250 ~~i~~fi  256 (432)
                      +.|.+|+
T Consensus        70 ~~l~~~l   76 (77)
T 1ilo_A           70 EEIKKIL   76 (77)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHHh
Confidence            9988875

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=98.11  E-value=2e-06  Score=65.40  Aligned_cols=76  Identities=14%  Similarity=0.089  Sum_probs=59.6

Q ss_pred             CcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcc---cccchhhhhCCCCCCCcEEEEEeCCCCceecCC
Q 013976          169 IKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED---VGKPVSEYFGITGEAPKVLAYTGNDDAKKHILD  244 (432)
Q Consensus       169 ~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~---~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~  244 (432)
                      +..++.||++| +.|+.+.+.|.+++..+.      .+|++...   -++.+++.|||.+.  |++++  ++  +.  +.
T Consensus        13 k~~vV~F~A~WC~~C~~~~p~~~~~a~~~~------~v~~~~~~~~~~~~~l~~~~~V~~~--PT~~i--~G--~~--~~   78 (106)
T 3kp8_A           13 QIGGTMYGAYWCPHCQDQKELFGAAFDQVP------YVECSPNGPGTPQAQECTEAGITSY--PTWII--NG--RT--YT   78 (106)
T ss_dssp             HHTCEEEECTTCHHHHHHHHHHGGGGGGSC------EEESCTTCTTSCCCHHHHHTTCCSS--SEEEE--TT--EE--EE
T ss_pred             CCEEEEEECCCCHHHHHHHHHHHHHHHhCC------EEEEecccccchhHHHHHHcCCeEe--CEEEE--CC--EE--ec
Confidence            35688999999 999999999999998775      45555210   15689999999998  99876  22  33  67


Q ss_pred             CCCCHHHHHHHHHH
Q 013976          245 GELTLDKIKTFGED  258 (432)
Q Consensus       245 ~~~~~~~i~~fi~~  258 (432)
                      |..+.+.|.+|+.-
T Consensus        79 G~~~~~~l~~~~~~   92 (106)
T 3kp8_A           79 GVRSLEALAVASGY   92 (106)
T ss_dssp             SCCCHHHHHHHHTC
T ss_pred             CCCCHHHHHHHhCC
Confidence            99999999999854

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=98.11  E-value=1.4e-05  Score=64.42  Aligned_cols=89  Identities=12%  Similarity=0.066  Sum_probs=69.2

Q ss_pred             CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCc-eEEEEEecCCcccccc-------------------------hhhh
Q 013976          167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNEDVGKP-------------------------VSEY  219 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~-i~f~~vd~~~~~~~~~-------------------------l~~~  219 (432)
                      .+++.++.||++| +.|+...+.+.++++++.++ +.|+.++++..   ..                         +++.
T Consensus        30 ~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~---~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  106 (148)
T 3hcz_A           30 QAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAKGIQVYAANIERK---DEEWLKFIRSKKIGGWLNVRDSKNHTDFKIT  106 (148)
T ss_dssp             CCSEEEEEEECGGGCTTCSHHHHHHHHHHHHGGGTEEEEEEECCSS---SHHHHHHHHHHTCTTSEEEECTTCCCCHHHH
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCEEEEEEEecCC---HHHHHHHHHHcCCCCceEEeccccchhHHHh
Confidence            4567788899999 89999999999999999876 99999998853   23                         8899


Q ss_pred             hCCCCCCCcEEEEEeCCCCceecCCCCCCHHHHHHHHHHHh
Q 013976          220 FGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFL  260 (432)
Q Consensus       220 ~~i~~~~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~  260 (432)
                      ||+...  |++++++.++...+.+.|..+.+.+.+.+.+.+
T Consensus       107 ~~i~~~--P~~~lid~~G~i~~~~~g~~~~~~~l~~l~~~l  145 (148)
T 3hcz_A          107 YDIYAT--PVLYVLDKNKVIIAKRIGYENLDDFLVQYEKSL  145 (148)
T ss_dssp             HCCCSS--CEEEEECTTCBEEEESCCGGGHHHHHHHHHHHH
T ss_pred             cCcCCC--CEEEEECCCCcEEEecCCHHHHHHHHHHHHHHh
Confidence            999887  999999776655666666655555555555443

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1

Probab=98.09  E-value=6.2e-06  Score=58.06  Aligned_cols=67  Identities=10%  Similarity=0.149  Sum_probs=50.8

Q ss_pred             EEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--c---cCCCCCCceEEEEeCCCcccCceeccCCCC
Q 013976          301 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--H---RAKSDGFPTILFFPAGNKSFDPINVDVDRT  375 (432)
Q Consensus       301 lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~---~~~i~~~P~i~~~~~g~~~~~~~~y~g~~~  375 (432)
                      +++|+++||++|+.+.+.++++        ++.+..+|++.++.  .   .+++.++|+++.  +|.      . .++.+
T Consensus         3 i~~y~~~~C~~C~~~~~~l~~~--------~i~~~~~di~~~~~~~~~~~~~~~~~vP~l~~--~g~------~-~~g~~   65 (75)
T 1r7h_A            3 ITLYTKPACVQCTATKKALDRA--------GLAYNTVDISLDDEARDYVMALGYVQAPVVEV--DGE------H-WSGFR   65 (75)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT--------TCCCEEEETTTCHHHHHHHHHTTCBCCCEEEE--TTE------E-EESCC
T ss_pred             EEEEeCCCChHHHHHHHHHHHc--------CCCcEEEECCCCHHHHHHHHHcCCCccCEEEE--CCe------E-EcCCC
Confidence            6789999999999999988875        36677788887654  3   688999999974  442      2 33467


Q ss_pred             HHHHHHHHH
Q 013976          376 VVALYKFLK  384 (432)
Q Consensus       376 ~~~l~~fi~  384 (432)
                      .+.|.++|+
T Consensus        66 ~~~l~~~l~   74 (75)
T 1r7h_A           66 PERIKQLQA   74 (75)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHHh
Confidence            888888773

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=98.09  E-value=1.7e-05  Score=62.73  Aligned_cols=91  Identities=18%  Similarity=0.140  Sum_probs=72.4

Q ss_pred             CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCc-------------------------ccccchhhhh
Q 013976          167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNE-------------------------DVGKPVSEYF  220 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~-------------------------~~~~~l~~~~  220 (432)
                      .+++.++.||++| +.|....+.+.++++++.+.+.++.+++...                         +....+++.|
T Consensus        21 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  100 (138)
T 4evm_A           21 KGKKVYLKFWASWCSICLASLPDTDEIAKEAGDDYVVLTVVSPGHKGEQSEADFKNWYKGLDYKNLPVLVDPSGKLLETY  100 (138)
T ss_dssp             TTSEEEEEECCTTCHHHHHHHHHHHHHHHTCTTTEEEEEEECTTSTTCCCHHHHHHHHTTCCCTTCCEEECTTCHHHHHT
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCCCcEEEEEEcCCCCchhhHHHHHHHHhhcCCCCeeEEECcchHHHHHc
Confidence            4567788889999 8999999999999999888899998854220                         0134678899


Q ss_pred             CCCCCCCcEEEEEeCCCCceecCCCCCCHHHHHHHHHHH
Q 013976          221 GITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDF  259 (432)
Q Consensus       221 ~i~~~~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~  259 (432)
                      |+...  |++++++.++...+.+.|..+.+.+.++++.+
T Consensus       101 ~v~~~--P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l  137 (138)
T 4evm_A          101 GVRSY--PTQAFIDKEGKLVKTHPGFMEKDAILQTLKEL  137 (138)
T ss_dssp             TCCSS--SEEEEECTTCCEEEEEESCCCHHHHHHHHHHC
T ss_pred             CcccC--CeEEEECCCCcEEEeecCCCcHHHHHHHHHhh
Confidence            99887  99999977665666778889999999998763

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=98.08  E-value=3.9e-06  Score=69.19  Aligned_cols=108  Identities=14%  Similarity=0.067  Sum_probs=80.0

Q ss_pred             ceeecCCCchhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccC-ceEEEEEecCC------------------c-
Q 013976          152 LVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDN------------------E-  210 (432)
Q Consensus       152 ~v~~l~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~-~i~f~~vd~~~------------------~-  210 (432)
                      .+..++.+.+......++++++.||++| +.|+...+.+.+++++|++ .+.|+.+.++.                  . 
T Consensus        22 ~l~~~~g~~~~~~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~  101 (164)
T 2h30_A           22 TMKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGFLHEKKDGEFQKWYAGLNYP  101 (164)
T ss_dssp             TCEETTSSBGGGGCCTTSCEEEEECCTTCHHHHHHHHHHHHHHTCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCT
T ss_pred             ccCCCCCCEeeHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCcEEEEEEcCCCccccCHHHHHHHHHhCCCC
Confidence            3445555555544445667888899999 8999999999999999753 36666665421                  0 


Q ss_pred             ------ccccchhhhhCCCCCCCcEEEEEeCCCCceecCCCCCCHHHHHHHHHHHhc
Q 013976          211 ------DVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  261 (432)
Q Consensus       211 ------~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  261 (432)
                            +....+++.||+...  |++++++.++...+.+.|..+.+.|.++++..+.
T Consensus       102 ~~~~~~d~~~~~~~~~~v~~~--P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~~~~  156 (164)
T 2h30_A          102 KLPVVTDNGGTIAQNLNISVY--PSWALIGKDGDVQRIVKGSINEAQALALIRNPNA  156 (164)
T ss_dssp             TSCEEECTTCHHHHHTTCCSS--SEEEEECTTSCEEEEEESCCCHHHHHHHHHCTTC
T ss_pred             cceEEEcCchHHHHHcCCCcc--ceEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence                  013467888999887  9999987766566677888999999999999765

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=98.07  E-value=2.1e-05  Score=64.80  Aligned_cols=91  Identities=8%  Similarity=0.130  Sum_probs=71.1

Q ss_pred             CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecC------------------Ccc--------------c-
Q 013976          167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMD------------------NED--------------V-  212 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~------------------~~~--------------~-  212 (432)
                      .++++++.||++| +.|....+.+.++++++. .+.|+.++++                  ...              + 
T Consensus        36 ~gk~~lv~F~~~~C~~C~~~~~~l~~l~~~~~-~v~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (165)
T 3ha9_A           36 GGDVVILWFMAAWCPSCVYMADLLDRLTEKYR-EISVIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFIANYGDPSWI  114 (165)
T ss_dssp             CSSEEEEEEECTTCTTHHHHHHHHHHHHHHCT-TEEEEEEECCSHHHHHHHTCCSTTSCCCCCHHHHHHHHHHHSCTTSE
T ss_pred             CCCEEEEEEECCCCcchhhhHHHHHHHHHHcC-CcEEEEEEecccccccccccccccCCCCCCHHHHHHHHHHcCCCCee
Confidence            4567788899999 999999999999999999 7999999887                  210              0 


Q ss_pred             ----ccchhhhhCCCCCCCcEEEEEeCCCCceecCCCCC-CHHHHHHHHHHHhcC
Q 013976          213 ----GKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGEL-TLDKIKTFGEDFLEG  262 (432)
Q Consensus       213 ----~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~~-~~~~i~~fi~~~~~g  262 (432)
                          ...+++.|++...  |++++++.++...+  .|.. +.+.|.++++..++|
T Consensus       115 ~~~d~~~~~~~~~v~~~--P~~~lid~~G~i~~--~g~~~~~~~l~~~l~~l~~g  165 (165)
T 3ha9_A          115 MVMDDGSLVEKFNVRSI--DYIVIMDKSSNVLY--AGTTPSLGELESVIKSVQGG  165 (165)
T ss_dssp             EEECCSHHHHHTTCCSS--SEEEEEETTCCEEE--EEESCCHHHHHHHHHHC---
T ss_pred             EEeChHHHHHHhCCCCc--eEEEEEcCCCcEEE--eCCCCCHHHHHHHHHHHhcC
Confidence                0267888999887  99999977654444  6777 999999999987754

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10

Probab=98.07  E-value=6.3e-06  Score=70.70  Aligned_cols=87  Identities=11%  Similarity=0.101  Sum_probs=66.4

Q ss_pred             CCcEEEEEe-CCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCcc---------------------------c---c
Q 013976          297 SKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE---------------------------H---H  345 (432)
Q Consensus       297 ~~~~lv~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~---------------------------~---~  345 (432)
                      ++.+||+|| ++||.+|....+.+.+++..|++. ++.++.|+++...                           .   .
T Consensus        36 gk~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~~-~v~vi~Is~D~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  114 (202)
T 1uul_A           36 GKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDI-GCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMK  114 (202)
T ss_dssp             TSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTT-TEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTCHHHH
T ss_pred             CCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHHHHhhCCCCCCceeEEECCchHHHH
Confidence            579999999 999999999999999999999763 6889999886410                           0   2


Q ss_pred             cCCCC------CCceEEEE-eCCCcccCceeccC----CCCHHHHHHHHHhcC
Q 013976          346 RAKSD------GFPTILFF-PAGNKSFDPINVDV----DRTVVALYKFLKKNA  387 (432)
Q Consensus       346 ~~~i~------~~P~i~~~-~~g~~~~~~~~y~g----~~~~~~l~~fi~~~~  387 (432)
                      .|++.      .+|+++++ ++|..+.   .+.|    ..+.+.|.+.|+...
T Consensus       115 ~ygv~~~~~g~~~P~~~lid~~G~i~~---~~~g~~~~~~~~~ell~~l~~l~  164 (202)
T 1uul_A          115 SYGVLKEEDGVAYRGLFIIDPKQNLRQ---ITVNDLPVGRDVDEALRLVKAFQ  164 (202)
T ss_dssp             HHTCEETTTTEECEEEEEECTTSBEEE---EEEECTTBCCCHHHHHHHHHHHH
T ss_pred             HcCCccCCCCceeeEEEEECCCCEEEE---EEeCCCCCCCCHHHHHHHHHHhh
Confidence            45777      89999999 5555432   2333    456788988888664

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=98.07  E-value=1.7e-05  Score=65.00  Aligned_cols=94  Identities=6%  Similarity=0.054  Sum_probs=74.7

Q ss_pred             CCCcceEEEEEeC-cchhh-hHHHHHHHHHhccCc-eEEEEEecCC-------------------------cccccc---
Q 013976          167 SPIKNQLLLFAVS-NDSEK-LLPVFEEAAKSFKGK-LIFVYVQMDN-------------------------EDVGKP---  215 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~~~~-~~~~~~~~a~~~~~~-i~f~~vd~~~-------------------------~~~~~~---  215 (432)
                      .++++++.||++| +.|.. ..+.+.+++++|.++ +.|+.|+++-                         .+....   
T Consensus        29 ~gk~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  108 (160)
T 3lor_A           29 RGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHSVFEHHDVMTPEALKVFIDEFGIKFPVAVDMPREGQR  108 (160)
T ss_dssp             TTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCTTCS
T ss_pred             CCCEEEEEEEcCCCcchhhhhhHHHHHHHHHhCcCCcEEEEEeccccccccCCHHHHHHHHHHcCCCCcEEECCccccch
Confidence            4567788899999 99999 599999999999875 8888887620                         000223   


Q ss_pred             ---hhhhhCCCCCCCcEEEEEeCCCCceecCCCCCCHHHHHHHHHHHhcC
Q 013976          216 ---VSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEG  262 (432)
Q Consensus       216 ---l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g  262 (432)
                         +.+.||+...  |++++++.++...+.+.|..+.+.+.++|+..++.
T Consensus       109 ~~~~~~~~~v~~~--P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~~  156 (160)
T 3lor_A          109 IPSTMKKYRLEGT--PSIILADRKGRIRQVQFGQVDDFVLGLLLGSLLSE  156 (160)
T ss_dssp             SCHHHHHTTCCSS--SEEEEECTTSBEEEEEESCCCHHHHHHHHHHHHTC
T ss_pred             hhhHHHhcccCcc--ceEEEECCCCcEEEEecCcCCHHHHHHHHHHHHhc
Confidence               7889999887  99989977665666778889999999999998863

>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10

Probab=98.06  E-value=5.2e-06  Score=70.61  Aligned_cols=88  Identities=11%  Similarity=0.114  Sum_probs=66.6

Q ss_pred             CCCcEEEEEe-CCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCcc---------------------------c---
Q 013976          296 ESKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE---------------------------H---  344 (432)
Q Consensus       296 ~~~~~lv~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~---------------------------~---  344 (432)
                      .++.+||+|| ++||.+|....+.+.+++..|++. ++.++.|+++...                           .   
T Consensus        30 ~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~-~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~  108 (192)
T 2h01_A           30 GKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKER-NVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIA  108 (192)
T ss_dssp             TTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHT-TEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHH
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEeCCHHHHHHHHHhHHhhCCccCCCcCeEECCcHHHH
Confidence            4579999999 999999999999999999999752 6888888876310                           0   


Q ss_pred             ccCCCC-----CCceEEEE-eCCCcccCceeccC----CCCHHHHHHHHHhcC
Q 013976          345 HRAKSD-----GFPTILFF-PAGNKSFDPINVDV----DRTVVALYKFLKKNA  387 (432)
Q Consensus       345 ~~~~i~-----~~P~i~~~-~~g~~~~~~~~y~g----~~~~~~l~~fi~~~~  387 (432)
                      ..|++.     .+|+++++ ++|..+.   .+.|    ..+.+.+.+.|++..
T Consensus       109 ~~~gv~~~~g~~~P~~~liD~~G~i~~---~~~g~~~~~~~~~~l~~~l~~l~  158 (192)
T 2h01_A          109 RSYDVLFNESVALRAFVLIDKQGVVQH---LLVNNLALGRSVDEILRLIDALQ  158 (192)
T ss_dssp             HHTTCEETTTEECCEEEEECTTSBEEE---EEEGGGSSGGGHHHHHHHHHHHH
T ss_pred             HHhCCcCcCCceeeEEEEEcCCCEEEE---EEeCCCCCCCCHHHHHHHHHHHh
Confidence            246888     89999999 5665442   3333    346788888887664

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=98.06  E-value=2.4e-05  Score=63.00  Aligned_cols=90  Identities=9%  Similarity=0.031  Sum_probs=70.4

Q ss_pred             CCCcceEEEEEeC-cchhhhHHHHHHHHHhc-cCc-eEEEEEecCCcc----------------------cccchhhhhC
Q 013976          167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSF-KGK-LIFVYVQMDNED----------------------VGKPVSEYFG  221 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~-~~~-i~f~~vd~~~~~----------------------~~~~l~~~~~  221 (432)
                      .++++++.||++| +.|+...+.+.++++++ .++ +.|+.++++...                      ....+++.||
T Consensus        32 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  111 (148)
T 3fkf_A           32 RNRYLLLNFWASWCDPQPEANAELKRLNKEYKKNKNFAMLGISLDIDREAWETAIKKDTLSWDQVCDFTGLSSETAKQYA  111 (148)
T ss_dssp             TTSEEEEEEECGGGCCCHHHHHHHHHHHHHTTTCTTEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHHTT
T ss_pred             CCcEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCCCeEEEEEECCCCHHHHHHHHHHcCCCceEEEccCCcchHHHHhcC
Confidence            4567788899999 89999999999999999 664 889988877521                      0237789999


Q ss_pred             CCCCCCcEEEEEeCCCCceecCCCCCCHHHHHHHHHHHhc
Q 013976          222 ITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  261 (432)
Q Consensus       222 i~~~~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  261 (432)
                      +...  |++++++.++...+.+.   +.+.+.++++.+++
T Consensus       112 v~~~--P~~~lid~~G~i~~~~~---~~~~l~~~l~~ll~  146 (148)
T 3fkf_A          112 ILTL--PTNILLSPTGKILARDI---QGEALTGKLKELLK  146 (148)
T ss_dssp             CCSS--SEEEEECTTSBEEEESC---CHHHHHHHHHHHC-
T ss_pred             CCCc--CEEEEECCCCeEEEecC---CHHHHHHHHHHHHc
Confidence            9987  99989876654444332   89999999998875

>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10

Probab=98.04  E-value=8.1e-06  Score=71.01  Aligned_cols=87  Identities=13%  Similarity=0.137  Sum_probs=66.9

Q ss_pred             CCcEEEEEe-CCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCcc---------------------------c---c
Q 013976          297 SKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE---------------------------H---H  345 (432)
Q Consensus       297 ~~~~lv~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~---------------------------~---~  345 (432)
                      ++++||+|| ++||..|....+.+.+++..|++. ++.++.|+++...                           .   .
T Consensus        56 Gk~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~~-~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~i~~  134 (220)
T 1zye_A           56 GKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDV-NCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISR  134 (220)
T ss_dssp             TSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHT-TEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred             CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHHHHHHhCCCcCCceEEEECCcHHHHH
Confidence            589999999 999999999999999999999753 6888888876410                           0   2


Q ss_pred             cCCCC------CCceEEEE-eCCCcccCceeccC----CCCHHHHHHHHHhcC
Q 013976          346 RAKSD------GFPTILFF-PAGNKSFDPINVDV----DRTVVALYKFLKKNA  387 (432)
Q Consensus       346 ~~~i~------~~P~i~~~-~~g~~~~~~~~y~g----~~~~~~l~~fi~~~~  387 (432)
                      .|++.      .+|+++++ ++|..+.   .+.|    ..+.+.+++.|+...
T Consensus       135 ~ygv~~~~~g~~~P~~~liD~~G~I~~---~~~g~~~~~~~~~ell~~l~~l~  184 (220)
T 1zye_A          135 DYGVLLEGPGLALRGLFIIDPNGVIKH---LSVNDLPVGRSVEETLRLVKAFQ  184 (220)
T ss_dssp             HTTCEETTTTEECEEEEEECTTSBEEE---EEEECTTCCCCHHHHHHHHHHHH
T ss_pred             HhCCeecCCCcccceEEEECCCCEEEE---EEecCCCCCCCHHHHHHHHHHhh
Confidence            46787      89999999 5665432   2233    367789998888765

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=98.04  E-value=7.2e-06  Score=68.51  Aligned_cols=80  Identities=10%  Similarity=0.083  Sum_probs=61.1

Q ss_pred             CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCcc---------------------------------
Q 013976          297 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE---------------------------------  343 (432)
Q Consensus       297 ~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~---------------------------------  343 (432)
                      .+.+|+.|+++||++|..+.|.+.++...+.+   +.+...+.....                                 
T Consensus        22 a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~---v~~~~~~~p~~~~~s~~aa~~~~~a~~~~~~~~~~~~lf~~~~~~   98 (175)
T 3gyk_A           22 GDVTVVEFFDYNCPYCRRAMAEVQGLVDADPN---VRLVYREWPILGEGSDFAARAALAARQQGKYEAFHWALMGMSGKA   98 (175)
T ss_dssp             CSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT---EEEEEEECCCSCHHHHHHHHHHHHGGGGTCHHHHHHHHHTCSSCC
T ss_pred             CCEEEEEEECCCCccHHHHHHHHHHHHHhCCC---EEEEEEeCCCCCCChHHHHHHHHHHHHHhHHHHHHHHHHhcCCCC
Confidence            46789999999999999999999999888654   555555532100                                 


Q ss_pred             -------------------------------c-------ccCCCCCCceEEEEeCCCcccCceeccCCCCHHHHHHHHHh
Q 013976          344 -------------------------------H-------HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKK  385 (432)
Q Consensus       344 -------------------------------~-------~~~~i~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~  385 (432)
                                                     .       ..++|.++|++++  +|.      .+.|..+.+.|.++|.+
T Consensus        99 ~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~gtPt~~i--~g~------~~~G~~~~~~l~~~i~~  170 (175)
T 3gyk_A           99 NETGVLRIAREVGLDTEQLQRDMEAPEVTAHIAQSMALAQKLGFNGTPSFVV--EDA------LVPGFVEQSQLQDAVDR  170 (175)
T ss_dssp             SHHHHHHHHHHTTCCHHHHHHHTTCHHHHHHHHHHHHHHHHHTCCSSSEEEE--TTE------EECSCCCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHcCCccCCEEEE--CCE------EeeCCCCHHHHHHHHHH
Confidence                                           0       2468999999987  452      56788899999999987


Q ss_pred             cC
Q 013976          386 NA  387 (432)
Q Consensus       386 ~~  387 (432)
                      ..
T Consensus       171 ~l  172 (175)
T 3gyk_A          171 AR  172 (175)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=98.04  E-value=7.3e-06  Score=71.10  Aligned_cols=80  Identities=15%  Similarity=0.243  Sum_probs=58.2

Q ss_pred             CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCC----------------------------------
Q 013976          296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT----------------------------------  341 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~----------------------------------  341 (432)
                      +.+.+++.||++||++|+.+.+.+.+++..     ++.+..+..-.                                  
T Consensus        85 ~~k~~vv~F~d~~Cp~C~~~~~~l~~l~~~-----~v~v~~~~~p~~~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~  159 (216)
T 1eej_A           85 QEKHVITVFTDITCGYCHKLHEQMADYNAL-----GITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVA  159 (216)
T ss_dssp             TCCEEEEEEECTTCHHHHHHHTTHHHHHHT-----TEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHhC-----CcEEEEEECCccCCCchHHHHHHHHHhccCHHHHHHHHHhCCCCC
Confidence            357899999999999999999999988652     34554433210                                  


Q ss_pred             -----ccc-------ccCCCCCCceEEEEeCCCcccCceeccCCCCHHHHHHHHHhcC
Q 013976          342 -----NEH-------HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA  387 (432)
Q Consensus       342 -----~~~-------~~~~i~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  387 (432)
                           ...       ..++|.++|++ ++.+|.      .+.|..+.+.|.++|.+..
T Consensus       160 ~~~~~~~v~~~~~l~~~~gV~gtPt~-v~~dG~------~~~G~~~~~~l~~~l~~~~  210 (216)
T 1eej_A          160 PASCDVDIADHYALGVQLGVSGTPAV-VLSNGT------LVPGYQPPKEMKEFLDEHQ  210 (216)
T ss_dssp             CCCCSCCHHHHHHHHHHHTCCSSSEE-ECTTSC------EEESCCCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHcCCCccCEE-EEcCCe------EecCCCCHHHHHHHHHHhh
Confidence                 011       35699999999 455663      5678889999999988753

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=98.03  E-value=1.9e-05  Score=64.06  Aligned_cols=96  Identities=14%  Similarity=0.117  Sum_probs=72.8

Q ss_pred             CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCc-eEEEEEecCCcc-------------------cccchhhhhCCCCC
Q 013976          167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNED-------------------VGKPVSEYFGITGE  225 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~-i~f~~vd~~~~~-------------------~~~~l~~~~~i~~~  225 (432)
                      .++++++.||++| +.|....+.+.+++.++.++ +.|+.++++...                   ....+++.||+...
T Consensus        27 ~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  106 (152)
T 3gl3_A           27 TGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAKGFQVVAVNLDAKTGDAMKFLAQVPAEFTVAFDPKGQTPRLYGVKGM  106 (152)
T ss_dssp             TTSEEEEEEECTTCTHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSHHHHHHHHHHSCCCSEEEECTTCHHHHHTTCCSS
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEECCCCHHHHHHHHHHcCCCCceeECCcchhHHHcCCCCC
Confidence            4557788889999 99999999999999999875 889988887521                   01256788999887


Q ss_pred             CCcEEEEEeCCCCceecCCCC--CCHHHHHHHHHHHhcCCc
Q 013976          226 APKVLAYTGNDDAKKHILDGE--LTLDKIKTFGEDFLEGKL  264 (432)
Q Consensus       226 ~~P~i~i~~~~~~~~y~~~~~--~~~~~i~~fi~~~~~g~l  264 (432)
                        |++++++.++...+.+.|.  .+.+.|.++|+..+.+.-
T Consensus       107 --P~~~lid~~G~i~~~~~g~~~~~~~~l~~~i~~~~~~~~  145 (152)
T 3gl3_A          107 --PTSFLIDRNGKVLLQHVGFRPADKEALEQQILAALGGNE  145 (152)
T ss_dssp             --SEEEEECTTSBEEEEEESCCTTTHHHHHHHHHHHTC---
T ss_pred             --CeEEEECCCCCEEEEEccCCCcCHHHHHHHHHHHHcccc
Confidence              9988887665555556563  466899999999887543

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=98.03  E-value=9.7e-06  Score=66.01  Aligned_cols=92  Identities=10%  Similarity=0.048  Sum_probs=73.6

Q ss_pred             CcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCc------------------------ccccchhhhhCCC
Q 013976          169 IKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNE------------------------DVGKPVSEYFGIT  223 (432)
Q Consensus       169 ~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~------------------------~~~~~l~~~~~i~  223 (432)
                      ++.++.||++| +.|+...+.+.++++++  .+.|+.|+++..                        .....+++.||+.
T Consensus        31 k~vll~f~~~~C~~C~~~~~~l~~l~~~~--~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~  108 (154)
T 3ia1_A           31 KPAVIVFWASWCTVCKAEFPGLHRVAEET--GVPFYVISREPRDTREVVLEYMKTYPRFIPLLASDRDRPHEVAARFKVL  108 (154)
T ss_dssp             SSEEEEEECTTCHHHHHHHHHHHHHHHHH--CCCEEEEECCTTCCHHHHHHHHTTCTTEEECBCCSSCCHHHHHTTSSBC
T ss_pred             CeEEEEEEcccChhHHHHHHHHHHHHHHc--CCeEEEEeCCCcccHHHHHHHHHHcCCCcccccccccchHHHHHHhCCC
Confidence            56788899999 99999999999999999  588888888210                        0145778899998


Q ss_pred             CCCCcEEEEEeCCCCceecCCCCCCHHHHHHHHHHHhcCCc
Q 013976          224 GEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKL  264 (432)
Q Consensus       224 ~~~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g~l  264 (432)
                      ..  |++++++.++...+.+.|..+.+.|.++|++...+.-
T Consensus       109 ~~--P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~~~~~~  147 (154)
T 3ia1_A          109 GQ--PWTFVVDREGKVVALFAGRAGREALLDALLLAGADLE  147 (154)
T ss_dssp             SS--CEEEEECTTSEEEEEEESBCCHHHHHHHHHHTTCCC-
T ss_pred             cc--cEEEEECCCCCEEEEEcCCCCHHHHHHHHHhccCccc
Confidence            77  9988887665556667888999999999999876543

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=98.02  E-value=2.3e-05  Score=69.13  Aligned_cols=52  Identities=8%  Similarity=0.195  Sum_probs=38.4

Q ss_pred             CcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc-----ccCCCCCCceEEE
Q 013976          298 KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----HRAKSDGFPTILF  357 (432)
Q Consensus       298 ~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-----~~~~i~~~P~i~~  357 (432)
                      ...+++|+.+||+.|+.+...+.+.        ++.+-.+|++.+..     ..++..++|++++
T Consensus       169 ~~~i~ly~~~~Cp~C~~a~~~L~~~--------~i~~~~~~i~~~~~~~~l~~~~g~~~vP~~~~  225 (241)
T 1nm3_A          169 QESISIFTKPGCPFCAKAKQLLHDK--------GLSFEEIILGHDATIVSVRAVSGRTTVPQVFI  225 (241)
T ss_dssp             CCCEEEEECSSCHHHHHHHHHHHHH--------TCCCEEEETTTTCCHHHHHHHTCCSSSCEEEE
T ss_pred             cceEEEEECCCChHHHHHHHHHHHc--------CCceEEEECCCchHHHHHHHHhCCCCcCEEEE
Confidence            3457889999999999998888875        35566677776543     2467789999753

>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D

Probab=98.01  E-value=1.5e-05  Score=69.37  Aligned_cols=87  Identities=13%  Similarity=0.123  Sum_probs=65.2

Q ss_pred             CCCcEEEEEeC-CCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc------------------------------
Q 013976          296 ESKDVLLEIYA-PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------------------------------  344 (432)
Q Consensus       296 ~~~~~lv~f~~-~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~------------------------------  344 (432)
                      .++++||.||+ +||.+|....|.+.++...|++. ++.++.|+++....                              
T Consensus        68 ~Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~~-~v~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~  146 (222)
T 3ztl_A           68 RGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSR-NCQVIACSTDSQYSHLAWDNLDRKSGGLGHMKIPLLADRKQEIS  146 (222)
T ss_dssp             TTSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHTT-TEEEEEEESSCHHHHHHHHHSCGGGTSCCSCSSCEEECSSSHHH
T ss_pred             CCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHHHhhhhccccccceeEEeCCchHHH
Confidence            46799999996 99999999999999999999863 68888888874210                              


Q ss_pred             ccCCCC------CCceEEEE-eCCCcccCceeccC----CCCHHHHHHHHHhc
Q 013976          345 HRAKSD------GFPTILFF-PAGNKSFDPINVDV----DRTVVALYKFLKKN  386 (432)
Q Consensus       345 ~~~~i~------~~P~i~~~-~~g~~~~~~~~y~g----~~~~~~l~~fi~~~  386 (432)
                      ..|++.      .+|+.+++ ++|..+.   .+.|    ....+.+++.|+..
T Consensus       147 ~~ygv~~~~~g~~~P~~~lID~~G~I~~---~~~g~~~~~~~~~~il~~l~~l  196 (222)
T 3ztl_A          147 KAYGVFDEEDGNAFRGLFIIDPNGILRQ---ITINDKPVGRSVDETLRLLDAF  196 (222)
T ss_dssp             HHTTCBCTTTSSBCEEEEEECTTSEEEE---EEEECTTBCCCHHHHHHHHHHH
T ss_pred             HHcCCeecCCCCccceEEEECCCCeEEE---EEecCCCCCCCHHHHHHHHHHh
Confidence            246777      89999999 5565432   3333    34578888888754

>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A

Probab=98.00  E-value=2.2e-05  Score=64.97  Aligned_cols=86  Identities=13%  Similarity=0.139  Sum_probs=62.0

Q ss_pred             CCCcEEEEEeCCC-ChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCcc----------------------c---ccCCC
Q 013976          296 ESKDVLLEIYAPW-CGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE----------------------H---HRAKS  349 (432)
Q Consensus       296 ~~~~~lv~f~~~~-c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~----------------------~---~~~~i  349 (432)
                      .+++++|.||++| |++|....|.+.+++..+ .  ++.++.|+.+...                      .   ..+++
T Consensus        43 ~gk~~vl~F~~~~~C~~C~~~~~~l~~l~~~~-~--~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~v  119 (167)
T 2jsy_A           43 KGKVTIISVIPSIDTGVCDAQTRRFNEEAAKL-G--DVNVYTISADLPFAQARWCGANGIDKVETLSDHRDMSFGEAFGV  119 (167)
T ss_dssp             TTSCEEEEECSCSTTSHHHHTHHHHHHHHHHH-S--SCEEEEEECSSGGGTSCCGGGSSCTTEEEEEGGGTCHHHHHTTC
T ss_pred             CCCeEEEEEecCCCCCchHHHHHHHHHHHHHc-C--CCEEEEEECCCHHHHHHHHHhcCCCCceEeeCCchhHHHHHhCC
Confidence            3679999999999 999999999999999999 3  6888888876411                      0   23455


Q ss_pred             CC------CceEEEE-eCCCcccCceeccC-----CCCHHHHHHHHHhcC
Q 013976          350 DG------FPTILFF-PAGNKSFDPINVDV-----DRTVVALYKFLKKNA  387 (432)
Q Consensus       350 ~~------~P~i~~~-~~g~~~~~~~~y~g-----~~~~~~l~~fi~~~~  387 (432)
                      ..      .|+.+++ ++|..+.   .+.|     ..+.+.+++.|++.+
T Consensus       120 ~~~~~g~~~p~~~lid~~G~i~~---~~~g~~~~~~~~~~~l~~~l~~ll  166 (167)
T 2jsy_A          120 YIKELRLLARSVFVLDENGKVVY---AEYVSEATNHPNYEKPIEAAKALV  166 (167)
T ss_dssp             BBTTTCSBCCEEEEECTTSCEEE---EEECSBTTSCCCSHHHHHHHHHHH
T ss_pred             ccccCCceeeEEEEEcCCCcEEE---EEecCCcCCCCCHHHHHHHHHHhh
Confidence            54      4988888 5565543   3332     335688888887653

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A

Probab=97.99  E-value=1.1e-05  Score=69.76  Aligned_cols=88  Identities=11%  Similarity=0.096  Sum_probs=65.5

Q ss_pred             CCCcEEEEEe-CCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCcc---------------------------c---
Q 013976          296 ESKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE---------------------------H---  344 (432)
Q Consensus       296 ~~~~~lv~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~---------------------------~---  344 (432)
                      .++++||+|| ++||..|....+.+.+++..|++. ++.++.|+++...                           .   
T Consensus        51 ~gk~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~~-~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~  129 (213)
T 2i81_A           51 GKKYVLLYFYPLDFTFVCPSEIIALDKALDAFHER-NVELLGCSVDSKYTHLAWKKTPLAKGGIGNIKHTLLSDITKSIS  129 (213)
T ss_dssp             TTCEEEEEECSCTTSSHHHHHHHHHHHTHHHHHHT-TEEEEEEESSCHHHHHHHHSSCGGGTCCCSCSSEEEECTTSHHH
T ss_pred             CCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHHHHhhCCccCCCceEEECCchHHH
Confidence            4578999999 999999999999999999999742 6888888876410                           0   


Q ss_pred             ccCCCC-----CCceEEEE-eCCCcccCceeccC----CCCHHHHHHHHHhcC
Q 013976          345 HRAKSD-----GFPTILFF-PAGNKSFDPINVDV----DRTVVALYKFLKKNA  387 (432)
Q Consensus       345 ~~~~i~-----~~P~i~~~-~~g~~~~~~~~y~g----~~~~~~l~~fi~~~~  387 (432)
                      ..|++.     .+|+++++ ++|..+.   .+.|    .++.+.|++.|+...
T Consensus       130 ~~ygv~~~~g~~~p~~~lID~~G~i~~---~~~~~~~~~~~~~ell~~l~~l~  179 (213)
T 2i81_A          130 KDYNVLFDDSVSLRAFVLIDMNGIVQH---LLVNNLAIGRSVDEILRIIDAIQ  179 (213)
T ss_dssp             HHTTCEETTTEECEEEEEECTTSBEEE---EEEECTTCCCCHHHHHHHHHHHH
T ss_pred             HHhCCccccCCcccEEEEECCCCEEEE---EEecCCCCCCCHHHHHHHHHHHH
Confidence            246777     89999998 5555432   2333    356888988888654

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=97.95  E-value=2.9e-05  Score=63.37  Aligned_cols=94  Identities=11%  Similarity=0.049  Sum_probs=74.1

Q ss_pred             CCCcceEEEEEeC-cchhhh-HHHHHHHHHhccC-ceEEEEEecCCc-------------------------cccc----
Q 013976          167 SPIKNQLLLFAVS-NDSEKL-LPVFEEAAKSFKG-KLIFVYVQMDNE-------------------------DVGK----  214 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~~~~~-~~~~~~~a~~~~~-~i~f~~vd~~~~-------------------------~~~~----  214 (432)
                      .++++++.||++| +.|... .+.+.+++++|.+ .+.|+.++++..                         +...    
T Consensus        27 ~gk~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  106 (158)
T 3eyt_A           27 RGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDKVAVLGLHTVFEHHEAMTPISLKAFLHEYRIKFPVGVDQPGDGAM  106 (158)
T ss_dssp             TTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCSSSS
T ss_pred             CCCEEEEEEECCcCcchhhhhhHHHHHHHHHhCcCCEEEEEEEecccccccCCHHHHHHHHHHcCCCceEEEcCccchhh
Confidence            3567788899999 899995 9999999999984 588888875310                         0011    


Q ss_pred             -chhhhhCCCCCCCcEEEEEeCCCCceecCCCCCCHHHHHHHHHHHhcC
Q 013976          215 -PVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEG  262 (432)
Q Consensus       215 -~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g  262 (432)
                       .+++.||+...  |++++++.++...+.+.|..+.+.+.++|+..++.
T Consensus       107 ~~~~~~~~v~~~--P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~~  153 (158)
T 3eyt_A          107 PRTMAAYQMRGT--PSLLLIDKAGDLRAHHFGDVSELLLGAEIATLLGE  153 (158)
T ss_dssp             CHHHHHTTCCSS--SEEEEECTTSEEEEEEESCCCHHHHHHHHHHHHTS
T ss_pred             HHHHHHcCCCCC--CEEEEECCCCCEEEEEeCCCCHHHHHHHHHHHhcc
Confidence             47889999887  99988877665566777889999999999998864

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=97.94  E-value=3.7e-05  Score=62.46  Aligned_cols=96  Identities=14%  Similarity=0.146  Sum_probs=71.5

Q ss_pred             CCCcceEEEEEeC-cchhhhHHHHHHHHHhccC-ceEEEEEecCCcc--------------------cccchhhhhCCCC
Q 013976          167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNED--------------------VGKPVSEYFGITG  224 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~-~i~f~~vd~~~~~--------------------~~~~l~~~~~i~~  224 (432)
                      .+++.++.||++| +.|....+.+.+++.++.+ .+.|+.++++...                    ....+++.||+..
T Consensus        27 ~gk~vll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  106 (154)
T 3kcm_A           27 KGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKRVGKLYGTTG  106 (154)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEEECCTTHHHHHHHHHHHHCCCCCEEECTTCHHHHHHTCCS
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEEcCCcchHHHHHHHHHcCCCeeEEecCchHHHHHhCCCC
Confidence            4567788899999 9999999999999999987 6888888887630                    0134788899988


Q ss_pred             CCCcEEEEEeCCCCceecCCCC--CCHHHHHHHHHHHhcCCc
Q 013976          225 EAPKVLAYTGNDDAKKHILDGE--LTLDKIKTFGEDFLEGKL  264 (432)
Q Consensus       225 ~~~P~i~i~~~~~~~~y~~~~~--~~~~~i~~fi~~~~~g~l  264 (432)
                      .  |++++++.++...+.+.|.  .+.+.+.++|+.+..+.-
T Consensus       107 ~--P~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~l~~~~~  146 (154)
T 3kcm_A          107 V--PETFVIDRHGVILKKVVGAMEWDHPEVIAFLNNELSKAR  146 (154)
T ss_dssp             B--CEEEEECTTSBEEEEEESCCCTTSHHHHHHHHTC-----
T ss_pred             C--CeEEEECCCCcEEEEEcCCCccccHHHHHHHHHHHHHhh
Confidence            7  9888887665555556664  477899999999766443

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=97.94  E-value=4.4e-05  Score=61.94  Aligned_cols=93  Identities=18%  Similarity=0.132  Sum_probs=72.0

Q ss_pred             CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCc-eEEEEEecCCccc----------------------ccchhhhhCC
Q 013976          167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNEDV----------------------GKPVSEYFGI  222 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~-i~f~~vd~~~~~~----------------------~~~l~~~~~i  222 (432)
                      .++++++.||++| +.|....+.+.+++.++.++ +.|+.++++....                      ...+++.||+
T Consensus        28 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v  107 (152)
T 2lrn_A           28 KGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDRREEDWKKAIEEDKSYWNQVLLQKDDVKDVLESYCI  107 (152)
T ss_dssp             TTSEEEEEEECTTCTTHHHHHHHHHHHHHHHTTTTEEEEEEECCSCHHHHHHHHHHHTCCSEEEEECHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHHHhCCCCeEEecccchhHHHHHHhCC
Confidence            4567788899999 99999999999999999875 9999998875210                      2467889999


Q ss_pred             CCCCCcEEEEEeCCCCceecCCCCCCHHHHHHHHHHHhcCCc
Q 013976          223 TGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKL  264 (432)
Q Consensus       223 ~~~~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g~l  264 (432)
                      ...  |++++++.++...+.+   .+.+.+.++++.++.+..
T Consensus       108 ~~~--P~~~lid~~G~i~~~~---~~~~~l~~~l~~l~~~~~  144 (152)
T 2lrn_A          108 VGF--PHIILVDPEGKIVAKE---LRGDDLYNTVEKFVNGAK  144 (152)
T ss_dssp             CSS--CEEEEECTTSEEEEEC---CCTTHHHHHHHHHHTSSS
T ss_pred             CcC--CeEEEECCCCeEEEee---CCHHHHHHHHHHHHhhcc
Confidence            887  9998887655444443   456789999999887544

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=97.94  E-value=8.9e-06  Score=62.27  Aligned_cols=86  Identities=12%  Similarity=-0.032  Sum_probs=66.5

Q ss_pred             CcceEEEEEeC-cchhhhHHHHHHHHHhccCc-----eEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCceec
Q 013976          169 IKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-----LIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHI  242 (432)
Q Consensus       169 ~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~-----i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~  242 (432)
                      ...+|+||++| +.|+.+.+   .++..+...     +.+..+|.+... ...+...++|.+.  |+++++.++ .....
T Consensus        19 ~~~LV~F~A~wC~~Ck~~~~---~i~~~~~~~a~~~~~~l~~vdv~~~~-~~~la~~~~V~g~--PT~i~f~~G-~ev~R   91 (116)
T 3dml_A           19 ELRLLMFEQPGCLYCARWDA---EIAPQYPLTDEGRAAPVQRLQMRDPL-PPGLELARPVTFT--PTFVLMAGD-VESGR   91 (116)
T ss_dssp             CEEEEEEECTTCHHHHHHHH---HTTTTGGGSHHHHHSCEEEEETTSCC-CTTCBCSSCCCSS--SEEEEEETT-EEEEE
T ss_pred             CCEEEEEECCCCHHHHHHHH---HHHhhHHHhhhcccceEEEEECCCCC-chhHHHHCCCCCC--CEEEEEECC-EEEee
Confidence            35688999999 99999975   344455443     778888988753 4567788899877  999999844 34556


Q ss_pred             CCCCCCHHHHHHHHHHHhc
Q 013976          243 LDGELTLDKIKTFGEDFLE  261 (432)
Q Consensus       243 ~~~~~~~~~i~~fi~~~~~  261 (432)
                      ..|.+..+.+.+|++..+.
T Consensus        92 i~G~~~~~~f~~~L~~~l~  110 (116)
T 3dml_A           92 LEGYPGEDFFWPMLARLIG  110 (116)
T ss_dssp             EECCCCHHHHHHHHHHHHH
T ss_pred             ecCCCCHHHHHHHHHHHHh
Confidence            7899999999999998764

>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1

Probab=97.93  E-value=1.3e-05  Score=69.25  Aligned_cols=79  Identities=15%  Similarity=0.196  Sum_probs=57.8

Q ss_pred             CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCC-----------------------------------
Q 013976          296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT-----------------------------------  340 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~-----------------------------------  340 (432)
                      +.+.+++.|+++||++|+.+.+.+.++...     ++.+..+..-                                   
T Consensus        85 ~~k~~vv~F~d~~Cp~C~~~~~~l~~~~~~-----~v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~~~~~~~~~  159 (211)
T 1t3b_A           85 NEKHVVTVFMDITCHYCHLLHQQLKEYNDL-----GITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPK  159 (211)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHTTHHHHHHT-----TEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCS
T ss_pred             CCCEEEEEEECCCCHhHHHHHHHHHHHHhC-----CcEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHHHHcCCCCC
Confidence            357899999999999999999999987542     2444433221                                   


Q ss_pred             ----Cccc-------ccCCCCCCceEEEEeCCCcccCceeccCCCCHHHHHHHHHhc
Q 013976          341 ----TNEH-------HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKN  386 (432)
Q Consensus       341 ----~~~~-------~~~~i~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~  386 (432)
                          ....       ..++|+++|++++ .+|.      .+.|..+.+.|.++|.+.
T Consensus       160 ~~~~~~~v~~~~~l~~~~gV~gTPt~vi-~nG~------~~~G~~~~~~l~~~l~~~  209 (211)
T 1t3b_A          160 EVKTPNIVKKHYELGIQFGVRGTPSIVT-STGE------LIGGYLKPADLLRALEET  209 (211)
T ss_dssp             SCCCSSHHHHHHHHHHHHTCCSSCEEEC-TTSC------CCCSCCCHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHHHHcCCCcCCEEEE-eCCE------EecCCCCHHHHHHHHHhc
Confidence                0000       3579999999998 6664      457888999999999864

>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A

Probab=97.92  E-value=1.1e-05  Score=69.03  Aligned_cols=46  Identities=9%  Similarity=-0.041  Sum_probs=37.7

Q ss_pred             CCCcEEEEEeCCCChh-hhhhHHHHHHHHHHhcC--CCCEEEEEEeCCC
Q 013976          296 ESKDVLLEIYAPWCGH-CQAFEPTYNKLAKHLRG--VDSIVIAKMDGTT  341 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~-c~~~~~~~~~la~~~~~--~~~~~~~~id~~~  341 (432)
                      .++++||.||++||++ |....+.+.++...+..  ..++.++.|+++.
T Consensus        40 ~Gk~vlv~F~at~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~Is~D~   88 (200)
T 2b7k_A           40 LGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDP   88 (200)
T ss_dssp             TTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCT
T ss_pred             CCCEEEEEEECCCCcchhHHHHHHHHHHHHHHHHhhCCceEEEEEECCC
Confidence            4689999999999998 99999999998887763  1267888887763

>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A

Probab=97.92  E-value=2.2e-05  Score=64.62  Aligned_cols=87  Identities=11%  Similarity=0.058  Sum_probs=62.8

Q ss_pred             CCcEEEEEeC-CCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc-----------------------ccCCCCC-
Q 013976          297 SKDVLLEIYA-PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----------------------HRAKSDG-  351 (432)
Q Consensus       297 ~~~~lv~f~~-~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-----------------------~~~~i~~-  351 (432)
                      +++++|+||+ +||++|....+.+.++...|++. ++.++.|.++....                       ..|++.. 
T Consensus        35 gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~-~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  113 (163)
T 3gkn_A           35 GHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKA-GAKILGVSRDSVKSHDNFCAKQGFAFPLVSDGDEALCRAFDVIKE  113 (163)
T ss_dssp             TSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHCCSSCEEECTTCHHHHHTTCEEE
T ss_pred             CCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHhCCccc
Confidence            5689999998 99999999999999999999863 57777777763111                       2345555 


Q ss_pred             -----------CceEEEE-eCCCcccCceeccC---CCCHHHHHHHHHhcC
Q 013976          352 -----------FPTILFF-PAGNKSFDPINVDV---DRTVVALYKFLKKNA  387 (432)
Q Consensus       352 -----------~P~i~~~-~~g~~~~~~~~y~g---~~~~~~l~~fi~~~~  387 (432)
                                 .|+.+++ ++|..+.   .+.+   ....+.+++.|++..
T Consensus       114 ~~~~~~~~~~~~p~~~lid~~G~i~~---~~~~~~~~~~~~~il~~l~~l~  161 (163)
T 3gkn_A          114 KNMYGKQVLGIERSTFLLSPEGQVVQ---AWRKVKVAGHADAVLAALKAHA  161 (163)
T ss_dssp             EEETTEEEEEECCEEEEECTTSCEEE---EECSCCSTTHHHHHHHHHHHHC
T ss_pred             cccccccccCcceEEEEECCCCeEEE---EEcCCCcccCHHHHHHHHHHHh
Confidence                       8999999 5565432   3333   345578888887654

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=97.91  E-value=3.2e-05  Score=62.97  Aligned_cols=91  Identities=16%  Similarity=0.176  Sum_probs=70.8

Q ss_pred             CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCc--------------------ccccchhhhhCCCCC
Q 013976          167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNE--------------------DVGKPVSEYFGITGE  225 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~--------------------~~~~~l~~~~~i~~~  225 (432)
                      .+++.++.||++| +.|+...+.+.+++.+  +++.|+.++++..                    +-...+++.||+...
T Consensus        41 ~gk~~ll~f~~~~C~~C~~~~~~l~~l~~~--~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  118 (156)
T 1kng_A           41 KGKVSLVNVWASWCVPCHDEAPLLTELGKD--KRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVYGV  118 (156)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHTTC--TTSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCCSS
T ss_pred             CCCEEEEEEEcccCHhHHHHHHHHHHHHhc--CCeEEEEEECCCCHHHHHHHHHHcCCCCceeeeCchhHHHHhcCcCcc
Confidence            3567788899999 8999999999999887  5688888876421                    113467788999887


Q ss_pred             CCcEEEEEeCCCCceecCCCCCCHHHHHHHHHHHhc
Q 013976          226 APKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  261 (432)
Q Consensus       226 ~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  261 (432)
                        |++++++.++...+.+.|..+.+.+.++++..+.
T Consensus       119 --P~~~~id~~G~i~~~~~g~~~~~~l~~~l~~~l~  152 (156)
T 1kng_A          119 --PETFVVGREGTIVYKLVGPITPDNLRSVLLPQME  152 (156)
T ss_dssp             --CEEEEECTTSBEEEEEESCCCHHHHHHTHHHHHH
T ss_pred             --CeEEEEcCCCCEEEEEeCCCCHHHHHHHHHHHHH
Confidence              9777776665555667888999999999998764

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24

Probab=97.87  E-value=6.5e-05  Score=60.84  Aligned_cols=93  Identities=14%  Similarity=0.096  Sum_probs=71.3

Q ss_pred             cCCCcceEEEEEeC-cchhhhHHHH---HHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCC-ce
Q 013976          166 ESPIKNQLLLFAVS-NDSEKLLPVF---EEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDA-KK  240 (432)
Q Consensus       166 ~~~~~~~i~~~~~~-~~~~~~~~~~---~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~-~~  240 (432)
                      ..+++++|.|+++| ..|+.+....   .+|+..++.++.++.+|.+..+ ...+++.|++.+.  |++++++...+ ..
T Consensus        40 ~~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~~~fv~v~~d~~~~~-~~~l~~~y~v~~~--P~~~fld~~~G~~l  116 (153)
T 2dlx_A           40 MQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEE-GQRYIQFYKLGDF--PYVSILDPRTGQKL  116 (153)
T ss_dssp             HHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHTEEEEEEESSSHH-HHHHHHHHTCCSS--SEEEEECTTTCCCC
T ss_pred             HcCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHHcCeEEEEEecCCHh-HHHHHHHcCCCCC--CEEEEEeCCCCcEe
Confidence            34667788899999 9999987554   4566666667999999997654 6678999999887  99999987633 33


Q ss_pred             ecCCCCCCHHHHHHHHHHHhcC
Q 013976          241 HILDGELTLDKIKTFGEDFLEG  262 (432)
Q Consensus       241 y~~~~~~~~~~i~~fi~~~~~g  262 (432)
                      ....| ++.+.+.++++.++..
T Consensus       117 ~~~~g-~~~~~fl~~L~~~l~~  137 (153)
T 2dlx_A          117 VEWHQ-LDVSSFLDQVTGFLGE  137 (153)
T ss_dssp             EEESS-CCHHHHHHHHHHHHHH
T ss_pred             eecCC-CCHHHHHHHHHHHHHh
Confidence            33445 8999999999998753

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=97.85  E-value=7.3e-05  Score=62.75  Aligned_cols=91  Identities=4%  Similarity=-0.009  Sum_probs=69.5

Q ss_pred             CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCc-e------EEEEEecCCcccccchhhhh------------------
Q 013976          167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-L------IFVYVQMDNEDVGKPVSEYF------------------  220 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~-i------~f~~vd~~~~~~~~~l~~~~------------------  220 (432)
                      .+++++|.||++| +.|....+.+.+++++|.++ +      .|+.|+++..  .+..++.|                  
T Consensus        58 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~~v~~v~v~~d~~--~~~~~~~~~~~~~~~~~~~~d~~~~~  135 (183)
T 3lwa_A           58 ENQVVILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINVRDY--SRDIAQDFVTDNGLDYPSIYDPPFMT  135 (183)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHCC---CCSEEEEEEECSCC--CHHHHHHHHHHTTCCSCEEECTTCGG
T ss_pred             CCCEEEEEEECCcCHhHHHHHHHHHHHHHHHHhcCCCccCCcEEEEEECCCC--CHHHHHHHHHHcCCCccEEECCcchH
Confidence            4567788899999 88999999999999999865 7      9999998761  11223333                  


Q ss_pred             -------CCCCCCCcEEEEEeCCCCceecCCCCCCHHHHHHHHHHHhc
Q 013976          221 -------GITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  261 (432)
Q Consensus       221 -------~i~~~~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  261 (432)
                             ++...  |++++++.+....+.+.|..+.+.|.++++.++.
T Consensus       136 ~~~~~~~~v~~~--P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~  181 (183)
T 3lwa_A          136 AASLGGVPASVI--PTTIVLDKQHRPAAVFLREVTSKDVLDVALPLVD  181 (183)
T ss_dssp             GGGTTTCCTTCC--SEEEEECTTSCEEEEECSCCCHHHHHHHHHHHHH
T ss_pred             HHHhccCCCCCC--CeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHh
Confidence                   34444  9888887766666777888999999999999875

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=97.82  E-value=6.8e-05  Score=63.69  Aligned_cols=93  Identities=13%  Similarity=0.109  Sum_probs=73.5

Q ss_pred             cceEEEEEeC-cchhhhHHHHHHHHHhccCc-eEEEEEecCCc--------------------------ccccchhhhhC
Q 013976          170 KNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNE--------------------------DVGKPVSEYFG  221 (432)
Q Consensus       170 ~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~-i~f~~vd~~~~--------------------------~~~~~l~~~~~  221 (432)
                      ++++.||++| +.|....+.+.+++.+|.++ +.|+.++++..                          +....+++.|+
T Consensus        48 ~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  127 (196)
T 2ywi_A           48 ATVIMFICNHCPFVKHVQHELVRLANDYMPKGVSFVAINSNDAEQYPEDSPENMKKVAEELGYPFPYLYDETQEVAKAYD  127 (196)
T ss_dssp             EEEEEECCSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSCHHHHHHT
T ss_pred             eEEEEEeCCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCccccccccCHHHHHHHHHHcCCCceEEECCchHHHHHhC
Confidence            3778888999 89999999999999999864 89999987421                          11346788999


Q ss_pred             CCCCCCcEEEEEeCCCCceec---------CCCCCCHHHHHHHHHHHhcCCc
Q 013976          222 ITGEAPKVLAYTGNDDAKKHI---------LDGELTLDKIKTFGEDFLEGKL  264 (432)
Q Consensus       222 i~~~~~P~i~i~~~~~~~~y~---------~~~~~~~~~i~~fi~~~~~g~l  264 (432)
                      +...  |++++++.++...+.         +.|..+.+.|.+.|+.++.++-
T Consensus       128 v~~~--P~~~lid~~G~i~~~~~~~~~~~~~~g~~~~~~l~~~i~~ll~~~~  177 (196)
T 2ywi_A          128 AACT--PDFYIFDRDLKCVYRGQLDDSRPNNGIPVTGESIRAALDALLEGRP  177 (196)
T ss_dssp             CCEE--SEEEEEETTCBEEEEECSSSCCTTTCCCCCCHHHHHHHHHHHHTCC
T ss_pred             CCCC--CeEEEEcCCCeEEEccccCcccccccCccCHHHHHHHHHHHHcCCC
Confidence            9877  999888766544554         4577899999999999987643

>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}

Probab=97.82  E-value=9.2e-05  Score=63.88  Aligned_cols=43  Identities=23%  Similarity=0.383  Sum_probs=37.5

Q ss_pred             CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCC
Q 013976          296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT  340 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~  340 (432)
                      .++.+||.|||+||++|. ..|.|.++...|++. ++.+.-|+|+
T Consensus        55 ~GKvvll~FwAt~C~~c~-e~p~L~~l~~~~~~~-g~~Vlgvs~d   97 (215)
T 2i3y_A           55 VGKHILFVNVATYCGLTA-QYPELNALQEELKPY-GLVVLGFPCN   97 (215)
T ss_dssp             TTSEEEEEEECSSSGGGG-GHHHHHHHHHHHGGG-TEEEEEEECC
T ss_pred             CCCEEEEEEeCCCCCChH-hHHHHHHHHHHhccC-CeEEEEEEcc
Confidence            468999999999999999 788999999999864 6888888865

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*

Probab=97.81  E-value=4.7e-06  Score=63.16  Aligned_cols=78  Identities=13%  Similarity=0.118  Sum_probs=49.3

Q ss_pred             EEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCcc--------c-ccCCCCCCceEEEEeCCCcccCceec
Q 013976          300 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--------H-HRAKSDGFPTILFFPAGNKSFDPINV  370 (432)
Q Consensus       300 ~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~--------~-~~~~i~~~P~i~~~~~g~~~~~~~~y  370 (432)
                      .+++|+++||++|+.+.+.|.+++..+.   .  +..+|++.++        . ..+++.++|++  |.+|..+.   .+
T Consensus        13 ~v~~f~~~~C~~C~~~~~~L~~~~~~~~---~--~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~i--~~~g~~i~---g~   82 (105)
T 1kte_A           13 KVVVFIKPTCPFCRKTQELLSQLPFKEG---L--LEFVDITATSDTNEIQDYLQQLTGARTVPRV--FIGKECIG---GC   82 (105)
T ss_dssp             CEEEEECSSCHHHHHHHHHHHHSCBCTT---S--EEEEEGGGSTTHHHHHHHHHHHHSCCCSCEE--EETTEEEE---SH
T ss_pred             CEEEEEcCCCHhHHHHHHHHHHcCCCCC---c--cEEEEccCCCCHHHHHHHHHHHhCCCCcCeE--EECCEEEe---cc
Confidence            4778999999999999999988743321   2  4556666552        1 35689999997  44665432   22


Q ss_pred             c---CCCCHHHHHHHHHhcC
Q 013976          371 D---VDRTVVALYKFLKKNA  387 (432)
Q Consensus       371 ~---g~~~~~~l~~fi~~~~  387 (432)
                      .   +......|.++|++..
T Consensus        83 ~~~~~~~~~g~L~~~l~~~g  102 (105)
T 1kte_A           83 TDLESMHKRGELLTRLQQVG  102 (105)
T ss_dssp             HHHHHHHHHTHHHHHHHHHT
T ss_pred             HHHHHHHHCCcHHHHHHHcC
Confidence            1   1122456666666543

>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A

Probab=97.80  E-value=7.1e-05  Score=62.42  Aligned_cols=85  Identities=15%  Similarity=0.140  Sum_probs=59.2

Q ss_pred             CCCcEEEEEeCCC-ChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCcc-----------------------c-ccCCCC
Q 013976          296 ESKDVLLEIYAPW-CGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE-----------------------H-HRAKSD  350 (432)
Q Consensus       296 ~~~~~lv~f~~~~-c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~-----------------------~-~~~~i~  350 (432)
                      .++++||.||++| |++|....|.+.++...  .  ++.++.|+.+...                       . ..|++.
T Consensus        43 ~gk~vvl~F~~t~~C~~C~~~~~~l~~l~~~--~--~v~vv~Is~D~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~  118 (175)
T 1xvq_A           43 RGKSVLLNIFPSVDTPVCATSVRTFDERAAA--S--GATVLCVSKDLPFAQKRFCGAEGTENVMPASAFRDSFGEDYGVT  118 (175)
T ss_dssp             TTSCEEEEECSCCCSSCCCHHHHHHHHHHHH--T--TCEEEEEESSCHHHHTTCC------CEEEEECTTSSHHHHTTCB
T ss_pred             CCCEEEEEEEeCCCCchHHHHHHHHHHHHhh--c--CCEEEEEECCCHHHHHHHHHHcCCCCceEeeCCHHHHHHHhCCc
Confidence            3578999999998 99999999999999988  3  5888888876210                       1 246666


Q ss_pred             CC---------ceEEEE-eCCCcccCceecc--C---CCCHHHHHHHHHhcC
Q 013976          351 GF---------PTILFF-PAGNKSFDPINVD--V---DRTVVALYKFLKKNA  387 (432)
Q Consensus       351 ~~---------P~i~~~-~~g~~~~~~~~y~--g---~~~~~~l~~fi~~~~  387 (432)
                      ..         |+.+++ ++|..+.   .+.  +   ....+.+++.+.+-+
T Consensus       119 ~~~~~~~g~~~p~~~lid~~G~I~~---~~~g~~~~~~~~~~~~l~~l~~~~  167 (175)
T 1xvq_A          119 IADGPMAGLLARAIVVIGADGNVAY---TELVPEIAQEPNYEAALAALGATS  167 (175)
T ss_dssp             BCSSTTTTSBCSEEEEECTTSBEEE---EEECSBTTCCCCHHHHHHHHHHTC
T ss_pred             ccccccCCcccceEEEECCCCeEEE---EEECCCcCCCCCHHHHHHHHHhhc
Confidence            65         888888 5565542   332  1   335677777666544

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B

Probab=97.78  E-value=2.7e-06  Score=65.61  Aligned_cols=80  Identities=14%  Similarity=0.089  Sum_probs=50.8

Q ss_pred             CcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCcc--------c-ccCCCCCCceEEEEeCCCcccCce
Q 013976          298 KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--------H-HRAKSDGFPTILFFPAGNKSFDPI  368 (432)
Q Consensus       298 ~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~--------~-~~~~i~~~P~i~~~~~g~~~~~~~  368 (432)
                      ...+++|+++||++|+.+.+.|.+++...   +.  +..+|++.++        . ..+++.++|++++  +|+.+.   
T Consensus        18 ~~~vv~f~~~~Cp~C~~~~~~L~~~~~~~---~~--~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~v~i--~g~~ig---   87 (114)
T 2hze_A           18 NNKVTIFVKYTCPFCRNALDILNKFSFKR---GA--YEIVDIKEFKPENELRDYFEQITGGKTVPRIFF--GKTSIG---   87 (114)
T ss_dssp             TTCEEEEECTTCHHHHHHHHHHTTSCBCT---TS--EEEEEGGGSSSHHHHHHHHHHHHSCCSSCEEEE--TTEEEE---
T ss_pred             cCCEEEEEeCCChhHHHHHHHHHHcCCCc---Cc--eEEEEccCCCChHHHHHHHHHHhCCCCcCEEEE--CCEEEe---
Confidence            44688899999999999998887653211   12  7778887764        1 3578999998743  665432   


Q ss_pred             eccC---CCCHHHHHHHHHhcC
Q 013976          369 NVDV---DRTVVALYKFLKKNA  387 (432)
Q Consensus       369 ~y~g---~~~~~~l~~fi~~~~  387 (432)
                      .+.+   ..+...|.++|+...
T Consensus        88 g~~~~~~~~~~~~L~~~L~~~g  109 (114)
T 2hze_A           88 GYSDLLEIDNMDALGDILSSIG  109 (114)
T ss_dssp             SHHHHHHHHHTTCHHHHHHHTT
T ss_pred             CcHHHHHHHHCChHHHHHHHcC
Confidence            2221   112345667776544

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=97.77  E-value=4.3e-05  Score=63.11  Aligned_cols=91  Identities=10%  Similarity=0.029  Sum_probs=69.3

Q ss_pred             cCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCc--------------------ccccchhhhhCCCC
Q 013976          166 ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNE--------------------DVGKPVSEYFGITG  224 (432)
Q Consensus       166 ~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~--------------------~~~~~l~~~~~i~~  224 (432)
                      ..+++.++.||++| +.|....+.+.+++++   .+.|+.++++..                    +....+++.||+..
T Consensus        49 ~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~---~v~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  125 (168)
T 2b1k_A           49 TQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ---GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYG  125 (168)
T ss_dssp             CCSSCEEEEEECTTCHHHHHHHHHHHHHHHT---TCCEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTCHHHHHHTCCS
T ss_pred             cCCCEEEEEEECCCCHHHHHHHHHHHHHHHC---CCEEEEEECCCChHHHHHHHHHcCCCCceeeECcchHHHHHcCccc
Confidence            35667788899999 8999999999999987   477777774321                    11446788999988


Q ss_pred             CCCcEEEEEeCCCCceecCCCCCCHHHHHHHHHHHhc
Q 013976          225 EAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  261 (432)
Q Consensus       225 ~~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  261 (432)
                      .  |+.++++.++...+.+.|..+.+.+.++++..+.
T Consensus       126 ~--P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~  160 (168)
T 2b1k_A          126 A--PETFLIDGNGIIRYRHAGDLNPRVWEEEIKPLWE  160 (168)
T ss_dssp             S--SEEEEECTTSBEEEEEESCCCHHHHHHTTHHHHH
T ss_pred             c--CEEEEECCCCeEEEEEeCCCCHHHHHHHHHHHHH
Confidence            7  9777776655555667788999999999988764

>3bj5_A Protein disulfide-isomerase; thioredoxin fold, chaperone, endoplasmic reticulum, isomeras membrane, redox-active center; 2.20A {Homo sapiens}

Probab=97.75  E-value=0.00014  Score=58.52  Aligned_cols=111  Identities=11%  Similarity=0.088  Sum_probs=79.6

Q ss_pred             CceEEEecccchhhhhcCCCcEEE-EEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCC--Cccc--ccCCCCC--
Q 013976          279 GDVKIVVGNNFDEIVLDESKDVLL-EIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT--TNEH--HRAKSDG--  351 (432)
Q Consensus       279 ~~v~~l~~~~~~~~~~~~~~~~lv-~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~--~~~~--~~~~i~~--  351 (432)
                      +.|..++.++...+. +..-++.+ +|....-..-..+.+.+.++|+.+++  ++.|+.+|.+  .+..  ..++++.  
T Consensus        14 PLV~e~t~en~~~~~-~~~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~fkg--ki~Fv~vd~~~~~~~~~l~~fGl~~~~   90 (147)
T 3bj5_A           14 PLVIEFTEQTAPKIF-GGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKG--KILFAFIDSDHTDNQRILEFFGLKKEE   90 (147)
T ss_dssp             -CEEECCTTTHHHHH-SSSCCEEEEEECCTTSSSHHHHHHHHHHHHHTTTT--TCEEEEECTTCGGGHHHHHHTTCCGGG
T ss_pred             CeeEEeccccHHHHh-cCCCceEEEEEecCCcHhHHHHHHHHHHHHHHcCC--ceEEEEEecchHhHHHHHHHcCCCccc
Confidence            458899999988865 44444444 45443334456788999999999998  7999999984  3322  5688885  


Q ss_pred             CceEEEEeC-CCcccCceecc-CCCCHHHHHHHHHhcCCCCCccc
Q 013976          352 FPTILFFPA-GNKSFDPINVD-VDRTVVALYKFLKKNASIPFKIQ  394 (432)
Q Consensus       352 ~P~i~~~~~-g~~~~~~~~y~-g~~~~~~l~~fi~~~~~~~~~~~  394 (432)
                      +|+++++.. +... +. .+. +..+.+.|.+|+++....+....
T Consensus        91 ~P~v~i~~~~~~~~-Ky-~~~~~~~t~~~i~~Fv~d~l~GkL~p~  133 (147)
T 3bj5_A           91 CPAVRLITLEEEMT-KY-KPESEELTAERITEFCHRFLEGKIKPH  133 (147)
T ss_dssp             CSEEEEEECSSSCE-EE-CCSCCCCCHHHHHHHHHHHHTTCSCEE
T ss_pred             CCEEEEEecccccc-cC-CCCcccCCHHHHHHHHHHHHcCCcccc
Confidence            999999975 3322 21 333 78899999999999998777543

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=97.75  E-value=0.00018  Score=58.05  Aligned_cols=90  Identities=14%  Similarity=0.139  Sum_probs=69.7

Q ss_pred             CCCcceEEEEEeC-cc--hhhhHHHHHHHHHhc-cCc-eEEEEEecCCcc----------------------cccchhhh
Q 013976          167 SPIKNQLLLFAVS-ND--SEKLLPVFEEAAKSF-KGK-LIFVYVQMDNED----------------------VGKPVSEY  219 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~--~~~~~~~~~~~a~~~-~~~-i~f~~vd~~~~~----------------------~~~~l~~~  219 (432)
                      .++++++.||++| ++  |....+.+.+++++| .++ +.|+.|+.+...                      ....+.+.
T Consensus        32 ~gk~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  111 (150)
T 3fw2_A           32 KQKSLLINFWASWNDSISQKQSNSELREIYKKYKKNKYIGMLGISLDVDKQQWKDAIKRDTLDWEQVCDFGGLNSEVAKQ  111 (150)
T ss_dssp             TTSEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTCSSEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHH
T ss_pred             CCCEEEEEEEeCCCCchHHHHHHHHHHHHHHHhccCCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEEcCcccchHHHHH
Confidence            4567788899999 89  999999999999999 654 888888877531                      01367889


Q ss_pred             hCCCCCCCcEEEEEeCCCCceecCCCCCCHHHHHHHHHHHhc
Q 013976          220 FGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  261 (432)
Q Consensus       220 ~~i~~~~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  261 (432)
                      ||+...  |++++++.++...+.+   .+.+.+.+.++.++.
T Consensus       112 ~~v~~~--P~~~lid~~G~i~~~~---~~~~~l~~~l~~ll~  148 (150)
T 3fw2_A          112 YSIYKI--PANILLSSDGKILAKN---LRGEELKKKIENIVE  148 (150)
T ss_dssp             TTCCSS--SEEEEECTTSBEEEES---CCHHHHHHHHHHHHH
T ss_pred             cCCCcc--CeEEEECCCCEEEEcc---CCHHHHHHHHHHHHh
Confidence            999877  9999997665444443   388889999888764

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=97.74  E-value=0.00011  Score=61.88  Aligned_cols=96  Identities=10%  Similarity=0.102  Sum_probs=72.6

Q ss_pred             CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCc--------------------------ccccchhhh
Q 013976          167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNE--------------------------DVGKPVSEY  219 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~--------------------------~~~~~l~~~  219 (432)
                      .++.+++.|+++| +.|....+.+.+++++|.+++.|+.++++..                          +....+.+.
T Consensus        32 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~v~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  111 (188)
T 2cvb_A           32 HEPLLAVVFMCNHCPYVKGSIGELVALAERYRGKVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVAKA  111 (188)
T ss_dssp             CSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHHHHH
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHhhcCeEEEEEEcCccccccccCHHHHHHHHHHhCCCceEEECCcchHHHH
Confidence            3467788899999 8899999999999999998788888887421                          013467888


Q ss_pred             hCCCCCCCcEEEEEeCCCCceec--------CCCCCCHHHHHHHHHHHhcCCc
Q 013976          220 FGITGEAPKVLAYTGNDDAKKHI--------LDGELTLDKIKTFGEDFLEGKL  264 (432)
Q Consensus       220 ~~i~~~~~P~i~i~~~~~~~~y~--------~~~~~~~~~i~~fi~~~~~g~l  264 (432)
                      ||+...  |++++++.+....+.        +.|..+.+.|.+.|+..+.++-
T Consensus       112 ~~v~~~--P~~~lid~~G~i~~~g~~~~~~~~~g~~~~~~l~~~i~~ll~~~~  162 (188)
T 2cvb_A          112 YRALRT--PEVFLFDERRLLRYHGRVNDNPKDPSKVQSHDLEAAIEALLRGEE  162 (188)
T ss_dssp             TTCCEE--SEEEEECTTCBEEEEECSSSCTTCGGGCCCCHHHHHHHHHHTTCC
T ss_pred             cCCCCC--CeEEEECCCCcEEEEEecCCccccccccCHHHHHHHHHHHHcCCC
Confidence            999877  999888765543343        1233478899999999987654

>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}

Probab=97.69  E-value=6.2e-05  Score=55.14  Aligned_cols=75  Identities=20%  Similarity=0.349  Sum_probs=56.0

Q ss_pred             EEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--c---c--CCCCCCceEEEEeCCCcccCceeccC
Q 013976          300 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--H---R--AKSDGFPTILFFPAGNKSFDPINVDV  372 (432)
Q Consensus       300 ~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~---~--~~i~~~P~i~~~~~g~~~~~~~~y~g  372 (432)
                      -++.|.++||++|......|.+.        ++.|..+|++.++.  .   +  .+..++|+|++ .+|..      . +
T Consensus         5 ~I~vYs~~~Cp~C~~aK~~L~~~--------gi~y~~idi~~d~~~~~~~~~~~~G~~tVP~I~i-~Dg~~------l-~   68 (92)
T 2lqo_A            5 ALTIYTTSWCGYCLRLKTALTAN--------RIAYDEVDIEHNRAAAEFVGSVNGGNRTVPTVKF-ADGST------L-T   68 (92)
T ss_dssp             CEEEEECTTCSSHHHHHHHHHHT--------TCCCEEEETTTCHHHHHHHHHHSSSSSCSCEEEE-TTSCE------E-E
T ss_pred             cEEEEcCCCCHhHHHHHHHHHhc--------CCceEEEEcCCCHHHHHHHHHHcCCCCEeCEEEE-eCCEE------E-e
Confidence            47889999999999998877764        57788899988765  1   1  25778998754 44532      2 2


Q ss_pred             CCCHHHHHHHHHhcCCCC
Q 013976          373 DRTVVALYKFLKKNASIP  390 (432)
Q Consensus       373 ~~~~~~l~~fi~~~~~~~  390 (432)
                      +.+.+.|.++|.+.++..
T Consensus        69 ~~~~~el~~~L~el~gL~   86 (92)
T 2lqo_A           69 NPSADEVKAKLVKIAGLE   86 (92)
T ss_dssp             SCCHHHHHHHHHHHHCCS
T ss_pred             CCCHHHHHHHHHHhcCCc
Confidence            478899999999887654

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}

Probab=97.68  E-value=4.4e-05  Score=63.21  Aligned_cols=90  Identities=11%  Similarity=0.096  Sum_probs=66.2

Q ss_pred             HHHhcCCCceeec--CCCchhhhccCCCcceEEEEEeC-cchhhhHHH-H--HHHHHhccCceEEEEEecCCcccccchh
Q 013976          144 FVFSNKLPLVTIF--TRENAPSVFESPIKNQLLLFAVS-NDSEKLLPV-F--EEAAKSFKGKLIFVYVQMDNEDVGKPVS  217 (432)
Q Consensus       144 fi~~~~~p~v~~l--~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~-~--~~~a~~~~~~i~f~~vd~~~~~~~~~l~  217 (432)
                      ++..+....|.-.  +.+.+......+++++|.|+++| +.|+.+.+. |  .+++..+.+++.++.||.++   .+++.
T Consensus        13 yl~~ha~~~v~W~~~~~ea~~~A~~~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~~~fv~ikVD~de---~~~l~   89 (173)
T 3ira_A           13 YLLQHAYNPVDWYPWGEEAFEKARKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNEAFVSIKVDREE---RPDID   89 (173)
T ss_dssp             HHHTTTTSSSCCBCSSHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHHHHCEEEEEETTT---CHHHH
T ss_pred             HHHhccCCCCCCCCcCHHHHHHHHHhCCCEEEecccchhHhhccccccccCCHHHHHHHHhcCceeeeCCcc---cCcHH
Confidence            4455554444332  33556666677888899999999 999999882 3  57888887789999999987   55777


Q ss_pred             hhh--------CCCCCCCcEEEEEeCCCC
Q 013976          218 EYF--------GITGEAPKVLAYTGNDDA  238 (432)
Q Consensus       218 ~~~--------~i~~~~~P~i~i~~~~~~  238 (432)
                      +.|        |+.+.  |+++++++++.
T Consensus        90 ~~y~~~~q~~~gv~g~--Pt~v~l~~dG~  116 (173)
T 3ira_A           90 NIYMTVCQIILGRGGW--PLNIIMTPGKK  116 (173)
T ss_dssp             HHHHHHHHHHHSCCCS--SEEEEECTTSC
T ss_pred             HHHHHHHHHHcCCCCC--cceeeECCCCC
Confidence            777        88887  99999976543

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=97.66  E-value=0.00024  Score=57.94  Aligned_cols=90  Identities=14%  Similarity=0.203  Sum_probs=67.7

Q ss_pred             CCCcceEEEEEeC-cchhhhHHHHHHHHHhcc-CceEEEEEecCCc----------------ccccchhhhhCCCCCCCc
Q 013976          167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFK-GKLIFVYVQMDNE----------------DVGKPVSEYFGITGEAPK  228 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~-~~i~f~~vd~~~~----------------~~~~~l~~~~~i~~~~~P  228 (432)
                      .++++++.||++| +.|+...+.+.++++++. ..+.|+.++++..                +....+++.||+...  |
T Consensus        40 ~gk~vll~F~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~--P  117 (158)
T 3hdc_A           40 RGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKGDLVVLAVNVEKRFPEKYRRAPVSFNFLSDATGQVQQRYGANRL--P  117 (158)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHSSTTSEEEEEEECSSSCCGGGGGCCCSCEEEECTTSHHHHHTTCCSS--S
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHHcccCCeEEEEEeCCHHHHHHHHHcCCCceEEECchHHHHHHhCCCCc--c
Confidence            4567788899999 899999999999999998 4699999988761                113478899999887  9


Q ss_pred             EEEEEeCCCCceecCCCC--CCHHHHHHHHHH
Q 013976          229 VLAYTGNDDAKKHILDGE--LTLDKIKTFGED  258 (432)
Q Consensus       229 ~i~i~~~~~~~~y~~~~~--~~~~~i~~fi~~  258 (432)
                      ++++++.++...+.+.|.  .+..++.+.+..
T Consensus       118 ~~~lid~~G~i~~~~~G~~~~~~~~~~~~~~~  149 (158)
T 3hdc_A          118 DTFIVDRKGIIRQRVTGGIEWDAPKVVSYLKS  149 (158)
T ss_dssp             EEEEECTTSBEEEEEESCCCTTSHHHHHHHHT
T ss_pred             eEEEEcCCCCEEEEEeCCCccchHHHHHHHHh
Confidence            988887766556666664  344455555443

>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0

Probab=97.65  E-value=4.5e-05  Score=64.67  Aligned_cols=42  Identities=26%  Similarity=0.484  Sum_probs=37.1

Q ss_pred             CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeC
Q 013976          296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG  339 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~  339 (432)
                      +.+.+|+.|+++||++|..+.|.+.++.+.+.+  ++.|..+.+
T Consensus        24 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~--~v~~~~~p~   65 (192)
T 3h93_A           24 PGKIEVVELFWYGCPHCYAFEPTIVPWSEKLPA--DVHFVRLPA   65 (192)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHTCCT--TEEEEEEEC
T ss_pred             CCCCEEEEEECCCChhHHHhhHHHHHHHHhCCC--CeEEEEEeh
Confidence            457799999999999999999999999999877  688887776

>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10

Probab=97.63  E-value=0.00016  Score=59.19  Aligned_cols=70  Identities=10%  Similarity=0.127  Sum_probs=50.0

Q ss_pred             CcEEEEEe-CCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCcc--------------------c---ccCCCCCCc
Q 013976          298 KDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--------------------H---HRAKSDGFP  353 (432)
Q Consensus       298 ~~~lv~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~--------------------~---~~~~i~~~P  353 (432)
                      +.+||+|| +.||++|....|.|.++...+++. . .++.|+++...                    .   ..|++...|
T Consensus        36 ~~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~~-~-~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~p  113 (159)
T 2a4v_A           36 RVVVFFVYPRASTPGSTRQASGFRDNYQELKEY-A-AVFGLSADSVTSQKKFQSKQNLPYHLLSDPKREFIGLLGAKKTP  113 (159)
T ss_dssp             SEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTT-C-EEEEEESCCHHHHHHHHHHHTCSSEEEECTTCHHHHHHTCBSSS
T ss_pred             CeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHhC-C-cEEEEeCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCcccc
Confidence            46888887 899999999999999999999875 3 66666665311                    0   245787888


Q ss_pred             -------eEEEEeCCCcccCceeccCC
Q 013976          354 -------TILFFPAGNKSFDPINVDVD  373 (432)
Q Consensus       354 -------~i~~~~~g~~~~~~~~y~g~  373 (432)
                             ++++ ++|..+.   .+.|.
T Consensus       114 ~~g~~~~~~li-~~G~i~~---~~~g~  136 (159)
T 2a4v_A          114 LSGSIRSHFIF-VDGKLKF---KRVKI  136 (159)
T ss_dssp             SSCBCCEEEEE-ETTEEEE---EEESC
T ss_pred             cCCccceEEEE-cCCEEEE---EEccC
Confidence                   5666 8776543   45553

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=97.61  E-value=0.00025  Score=59.54  Aligned_cols=97  Identities=10%  Similarity=0.057  Sum_probs=71.0

Q ss_pred             CCCcceEEEEEeC-cchhhhHHHHHHHHHhcc-CceEEEEEecCCc--ccccchhhhhCCCC------------------
Q 013976          167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFK-GKLIFVYVQMDNE--DVGKPVSEYFGITG------------------  224 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~-~~i~f~~vd~~~~--~~~~~l~~~~~i~~------------------  224 (432)
                      .++.+++.||++| +.|....+.+.++++++. ..+.++.|+++..  +....+++.+++..                  
T Consensus        59 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  138 (186)
T 1jfu_A           59 RGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAI  138 (186)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHHHHTT
T ss_pred             CCCEEEEEEEeCCCHhHHHHHHHHHHHHHHhccCCcEEEEEECCCCCHHHHHHHHHHcCCCCCceEECCcchHHHHhccc
Confidence            4557788889999 899999999999999998 4688888887753  11245566667641                  


Q ss_pred             ---CCCcEEEEEeCCCCceecCCCCC--CHHHHHHHHHHHhcCC
Q 013976          225 ---EAPKVLAYTGNDDAKKHILDGEL--TLDKIKTFGEDFLEGK  263 (432)
Q Consensus       225 ---~~~P~i~i~~~~~~~~y~~~~~~--~~~~i~~fi~~~~~g~  263 (432)
                         ...|++++++.++...+.+.|..  +.+.+.++|+..+.++
T Consensus       139 ~~~~~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~ll~~~  182 (186)
T 1jfu_A          139 GRALGMPTSVLVDPQGCEIATIAGPAEWASEDALKLIRAATGKA  182 (186)
T ss_dssp             TCCSSSSEEEEECTTSBEEEEEESCCCTTSHHHHHHHHHHHC--
T ss_pred             cccCCCCEEEEECCCCCEEEEEecCCccCHHHHHHHHHHHhccc
Confidence               13599988877665556666654  4789999999988753

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=97.60  E-value=0.0002  Score=58.00  Aligned_cols=84  Identities=7%  Similarity=0.040  Sum_probs=64.4

Q ss_pred             CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCc-eEEEEEecCCccc-----------------cc---chhhhhCCCC
Q 013976          167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNEDV-----------------GK---PVSEYFGITG  224 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~-i~f~~vd~~~~~~-----------------~~---~l~~~~~i~~  224 (432)
                      .++++++.||++| +.|....+.+.+++++|.++ +.++.++++....                 ..   .+.+.||+..
T Consensus        34 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~  113 (152)
T 2lrt_A           34 KGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQGFEIYQISLDGDEHFWKTSADNLPWVCVRDANGAYSSYISLYNVTN  113 (152)
T ss_dssp             GGSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECSCCHHHHHHHHTTCSSEEEECSSGGGCHHHHHHTCCS
T ss_pred             CCCEEEEEEEcCCChhhHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHhCCCceEEECCCCcchHHHHHcCccc
Confidence            3557788899999 89999999999999999875 8999998876320                 00   2778899987


Q ss_pred             CCCcEEEEEeCCCCceecCCCCCCHHHH
Q 013976          225 EAPKVLAYTGNDDAKKHILDGELTLDKI  252 (432)
Q Consensus       225 ~~~P~i~i~~~~~~~~y~~~~~~~~~~i  252 (432)
                      .  |++++++.++...+.+.|..+.++.
T Consensus       114 ~--P~~~lid~~G~i~~~~~g~~~~e~~  139 (152)
T 2lrt_A          114 L--PSVFLVNRNNELSARGENIKDLDEA  139 (152)
T ss_dssp             C--SEEEEEETTTEEEEETTTCSCHHHH
T ss_pred             C--ceEEEECCCCeEEEecCCHHHHHHH
Confidence            7  9999998766556667776665543

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}

Probab=97.59  E-value=0.00015  Score=67.32  Aligned_cols=94  Identities=14%  Similarity=0.071  Sum_probs=75.6

Q ss_pred             CCCcceEEEEEeC-cchhhhHHHHHHHHHhccC-ceEEEEEecCCc------------------------ccccchhhhh
Q 013976          167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNE------------------------DVGKPVSEYF  220 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~-~i~f~~vd~~~~------------------------~~~~~l~~~~  220 (432)
                      .+++++|.||++| +.|+...+.+.+++++|.+ .+.|+.|+++..                        +....+++.|
T Consensus        81 ~GK~vLl~F~atwC~~C~~~~p~L~~l~~~~~~~~v~vi~Vs~d~~~~~d~~~~~~~~~~~~~l~fpv~~D~~~~l~~~y  160 (352)
T 2hyx_A           81 RGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTPEYAFEKVPGNVAKGAANLGISYPIALDNNYATWTNY  160 (352)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSGGGGCHHHHHHHHHHHTCCSCEEECTTSHHHHHT
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHhhcCCeEEEEEECCcccccCCHHHHHHHHHHcCCCccEEeCCcHHHHHHc
Confidence            3567788899999 8999999999999999986 489999887531                        0024678889


Q ss_pred             CCCCCCCcEEEEEeCCCCceecCCCCCCHHHHHHHHHHHhcC
Q 013976          221 GITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEG  262 (432)
Q Consensus       221 ~i~~~~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g  262 (432)
                      ++...  |++++++.+....+.+.|..+.+.+.++|++++..
T Consensus       161 gV~~~--Pt~~lID~~G~Iv~~~~G~~~~~~l~~~I~~lL~e  200 (352)
T 2hyx_A          161 RNRYW--PAEYLIDATGTVRHIKFGEGDYNVTETLVRQLLND  200 (352)
T ss_dssp             TCCEE--SEEEEECTTSBEEEEEESBCCHHHHHHHHHHHHHH
T ss_pred             CCCcc--CEEEEEeCCCeEEEEEcCCCCHHHHHHHHHHHHhh
Confidence            99877  99988877665666778888999999999998753

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=97.58  E-value=0.00011  Score=53.32  Aligned_cols=75  Identities=12%  Similarity=0.166  Sum_probs=58.2

Q ss_pred             eEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCceecCCCCCCHH
Q 013976          172 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLD  250 (432)
Q Consensus       172 ~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~~~~~  250 (432)
                      +++|+++| +.|+.+.+.+++++.++     +..+|+++   ++.+...||++ .  |++++ .++  +..  .|.++.+
T Consensus         3 vv~f~a~~C~~C~~~~~~L~~~~~~~-----~~~vdid~---~~~l~~~~g~~-v--Ptl~~-~~G--~~v--~g~~~~~   66 (87)
T 1ttz_A            3 LTLYQRDDCHLCDQAVEALAQARAGA-----FFSVFIDD---DAALESAYGLR-V--PVLRD-PMG--REL--DWPFDAP   66 (87)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHTTCCC-----EEEEECTT---CHHHHHHHTTT-C--SEEEC-TTC--CEE--ESCCCHH
T ss_pred             EEEEECCCCchHHHHHHHHHHHHHhh-----eEEEECCC---CHHHHHHhCCC-c--CeEEE-ECC--EEE--eCCCCHH
Confidence            67788999 99999999999988765     57899987   56888999996 5  99976 332  332  2778999


Q ss_pred             HHHHHHHHHhcC
Q 013976          251 KIKTFGEDFLEG  262 (432)
Q Consensus       251 ~i~~fi~~~~~g  262 (432)
                      .|.+|++.++..
T Consensus        67 ~L~~~l~~~~~~   78 (87)
T 1ttz_A           67 RLRAWLDAAPHA   78 (87)
T ss_dssp             HHHHHHHTCC--
T ss_pred             HHHHHHHHHHHH
Confidence            999999886653

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A

Probab=97.58  E-value=0.00012  Score=60.47  Aligned_cols=75  Identities=5%  Similarity=-0.095  Sum_probs=56.9

Q ss_pred             CCCchhhhcc-CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhC---CCCCCCcEEE
Q 013976          157 TRENAPSVFE-SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFG---ITGEAPKVLA  231 (432)
Q Consensus       157 ~~~~~~~~~~-~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~---i~~~~~P~i~  231 (432)
                      +.+.+..+-. .++..++.|+++| ++|+...|.+.+++..+. ++.|+.+|.+.   ++.++..|+   +.+.  |+++
T Consensus        42 ~~~~~~~l~~~~~k~vvv~F~A~WC~pC~~~~P~l~~l~~~~~-~v~~~~v~~d~---~~~~~~~~~~~~v~~i--Pt~i  115 (167)
T 1z6n_A           42 PSALTERLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQP-NIELAIISKGR---AEDDLRQRLALERIAI--PLVL  115 (167)
T ss_dssp             CHHHHHHHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT-TEEEEEECHHH---HHHHTTTTTTCSSCCS--SEEE
T ss_pred             CHHHHHHHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHCC-CcEEEEEECCC---CHHHHHHHHHcCCCCc--CeEE
Confidence            4444444322 3456678899999 999999999999999886 59999999876   456777776   7666  9999


Q ss_pred             EEeCCC
Q 013976          232 YTGNDD  237 (432)
Q Consensus       232 i~~~~~  237 (432)
                      +++.++
T Consensus       116 ~~~~~G  121 (167)
T 1z6n_A          116 VLDEEF  121 (167)
T ss_dssp             EECTTC
T ss_pred             EECCCC
Confidence            987654

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=97.57  E-value=0.00027  Score=58.85  Aligned_cols=90  Identities=8%  Similarity=0.093  Sum_probs=70.1

Q ss_pred             CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCc--------------------ccccchhhhhCCCCC
Q 013976          167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNE--------------------DVGKPVSEYFGITGE  225 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~--------------------~~~~~l~~~~~i~~~  225 (432)
                      .++++++.||++| +.|....+.+.+++++   .+.|+.|++++.                    +....+++.||+...
T Consensus        57 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~---~v~vv~vs~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  133 (176)
T 3kh7_A           57 KGKPALVNVWGTWCPSCRVEHPELTRLAEQ---GVVIYGINYKDDNAAAIKWLNELHNPYLLSISDADGTLGLDLGVYGA  133 (176)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHT---TCEEEEEEESCCHHHHHHHHHHTTCCCSEEEEETTCHHHHHHTCCSS
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHC---CCEEEEEeCCCCHHHHHHHHHHcCCCCceEEECCcchHHHHcCCCCC
Confidence            3567788899999 8999999999999987   377777764220                    013467788999887


Q ss_pred             CCcEEEEEeCCCCceecCCCCCCHHHHHHHHHHHhc
Q 013976          226 APKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  261 (432)
Q Consensus       226 ~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  261 (432)
                        |+.++++.++...+.+.|..+.+.+.+++..++.
T Consensus       134 --P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~  167 (176)
T 3kh7_A          134 --PETYLIDKQGIIRHKIVGVVDQKVWREQLAPLYQ  167 (176)
T ss_dssp             --CEEEEECTTCBEEEEEESCCCHHHHHHHTHHHHH
T ss_pred             --CeEEEECCCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence              9888887766666777888999999999998875

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=97.56  E-value=0.00013  Score=64.25  Aligned_cols=83  Identities=10%  Similarity=0.141  Sum_probs=59.9

Q ss_pred             CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCC-----------------------------------
Q 013976          297 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT-----------------------------------  341 (432)
Q Consensus       297 ~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~-----------------------------------  341 (432)
                      .+.+|+.|+.+||++|+.+.+.+.++.+.  +  ++.+..++..-                                   
T Consensus        97 ak~~v~~F~D~~Cp~C~~~~~~l~~~~~~--g--~v~v~~~~~p~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~~l~  172 (241)
T 1v58_A           97 APVIVYVFADPFCPYCKQFWQQARPWVDS--G--KVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLKLN  172 (241)
T ss_dssp             CSEEEEEEECTTCHHHHHHHHHHHHHHHT--T--SEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCCCC
T ss_pred             CCeEEEEEECCCChhHHHHHHHHHHHHhC--C--cEEEEEEECCcCCCcHHHHHHHHHHccCHHHHHHHHHHHhccCCCC
Confidence            45689999999999999999998887653  2  57776655421                                   


Q ss_pred             --------c--cc-------ccCCCCCCceEEEEeC-CCcccCceeccCCCCHHHHHHHHHhcC
Q 013976          342 --------N--EH-------HRAKSDGFPTILFFPA-GNKSFDPINVDVDRTVVALYKFLKKNA  387 (432)
Q Consensus       342 --------~--~~-------~~~~i~~~P~i~~~~~-g~~~~~~~~y~g~~~~~~l~~fi~~~~  387 (432)
                              .  ..       ..++|.++|++++... |..    ....|..+.+.|.++|++..
T Consensus       173 ~~~~~~~~~~~~v~~~~~l~~~~gv~gtPt~vi~~~~G~~----~~~~G~~~~~~L~~~l~~~~  232 (241)
T 1v58_A          173 VPANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTL----QQAVGLPDQKTLNIIMGNKL  232 (241)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEE----EEEESSCCHHHHHHHTTC--
T ss_pred             ccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCE----EEecCCCCHHHHHHHHHHHH
Confidence                    0  00       2469999999999863 421    15778889999999988764

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=97.56  E-value=0.00021  Score=57.00  Aligned_cols=89  Identities=8%  Similarity=0.143  Sum_probs=63.8

Q ss_pred             CCCcceEEEEEeC-cchhhhHHHHHH---HHHhccC-ceEEEEEecCCcc-ccc------------------ch--hhhh
Q 013976          167 SPIKNQLLLFAVS-NDSEKLLPVFEE---AAKSFKG-KLIFVYVQMDNED-VGK------------------PV--SEYF  220 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~~~~~~~~~~~---~a~~~~~-~i~f~~vd~~~~~-~~~------------------~l--~~~~  220 (432)
                      .++++++.||++| +.|....+.+.+   +++++++ .+.++.++.+... ...                  .+  .+.|
T Consensus        26 ~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  105 (142)
T 3ewl_A           26 KAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREEWATKAVYMPQGWIVGWNKAGDIRTRQLY  105 (142)
T ss_dssp             CCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHTSEEEEEEECSSCHHHHHHHHTTSCTTCEEEECTTCHHHHTTCS
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccCCeEEEEEEecCCHHHHHHHHHHcCCCcceeeCCccchhhHHHc
Confidence            4567788899999 899999999888   8888865 4888888877521 000                  11  2378


Q ss_pred             CCCCCCCcEEEEEeCCCCceecCCCCCCHHHHHHHHHHHh
Q 013976          221 GITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFL  260 (432)
Q Consensus       221 ~i~~~~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~  260 (432)
                      |+...  |++++++.++...+   +..+.+.|.+++++..
T Consensus       106 ~v~~~--P~~~lid~~G~i~~---~~~~~~~l~~~l~~~~  140 (142)
T 3ewl_A          106 DIRAT--PTIYLLDGRKRVIL---KDTSMEQLIDYLATQA  140 (142)
T ss_dssp             CCCSS--SEEEEECTTCBEEE---CSCCHHHHHHHHHC--
T ss_pred             CCCCC--CeEEEECCCCCEEe---cCCCHHHHHHHHHHHc
Confidence            88777  99988876543333   5688999999998754

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=97.56  E-value=0.00015  Score=54.63  Aligned_cols=76  Identities=13%  Similarity=0.115  Sum_probs=60.8

Q ss_pred             cceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCceecCCCCCC
Q 013976          170 KNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELT  248 (432)
Q Consensus       170 ~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~~~  248 (432)
                      +.+++|+++| +.|+.+.+.+++++.++.  +.|..+|+++   .+.+...||++   .|+++++.++  +.. ..|.++
T Consensus        30 ~~vv~y~~~~C~~C~~a~~~L~~l~~e~~--i~~~~vDId~---d~~l~~~ygv~---VP~l~~~~dG--~~v-~~g~~~   98 (107)
T 2fgx_A           30 RKLVVYGREGCHLCEEMIASLRVLQKKSW--FELEVINIDG---NEHLTRLYNDR---VPVLFAVNED--KEL-CHYFLD   98 (107)
T ss_dssp             CCEEEEECSSCHHHHHHHHHHHHHHHHSC--CCCEEEETTT---CHHHHHHSTTS---CSEEEETTTT--EEE-ECSSCC
T ss_pred             cEEEEEeCCCChhHHHHHHHHHHHHHhcC--CeEEEEECCC---CHHHHHHhCCC---CceEEEEECC--EEE-EecCCC
Confidence            4477888889 999999999999999875  8899999987   45788899985   5999776443  222 357789


Q ss_pred             HHHHHHHH
Q 013976          249 LDKIKTFG  256 (432)
Q Consensus       249 ~~~i~~fi  256 (432)
                      .+.|.+|+
T Consensus        99 ~~~L~~~L  106 (107)
T 2fgx_A           99 SDVIGAYL  106 (107)
T ss_dssp             CHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99999887

>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}

Probab=97.54  E-value=0.00016  Score=62.80  Aligned_cols=88  Identities=11%  Similarity=0.101  Sum_probs=63.7

Q ss_pred             CCCcEEEEEe-CCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc------------------------------
Q 013976          296 ESKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------------------------------  344 (432)
Q Consensus       296 ~~~~~lv~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~------------------------------  344 (432)
                      .++++||+|| ++||..|....|.|.++...|+.. ++.++.|+++....                              
T Consensus        55 ~Gk~vvl~F~patwCp~C~~e~p~l~~l~~~~~~~-~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~  133 (221)
T 2c0d_A           55 GQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFENK-NVELLGISVDSVYSHLAWKNMPIEKGGIGNVEFTLVSDINKDIS  133 (221)
T ss_dssp             TTCEEEEEECCCCTTTCCHHHHHHHHHTHHHHHHT-TEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSEEEECTTSHHH
T ss_pred             CCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHHhhhhcCccCCceEEEECCchHHH
Confidence            4578999999 999999999999999999999752 68888887754110                              


Q ss_pred             ccCCC-----CCCceEEEEe-CCCcccCceeccC----CCCHHHHHHHHHhcC
Q 013976          345 HRAKS-----DGFPTILFFP-AGNKSFDPINVDV----DRTVVALYKFLKKNA  387 (432)
Q Consensus       345 ~~~~i-----~~~P~i~~~~-~g~~~~~~~~y~g----~~~~~~l~~fi~~~~  387 (432)
                      ..|++     ..+|+.+++. +|..+.   .+.|    ..+.+.|++.|+...
T Consensus       134 ~~ygv~~~~g~~~P~~~lID~~G~I~~---~~~g~~~~~~~~~ell~~l~~L~  183 (221)
T 2c0d_A          134 KNYNVLYDNSFALRGLFIIDKNGCVRH---QTVNDLPIGRNVQEVLRTIDSII  183 (221)
T ss_dssp             HHTTCEETTTEECEEEEEECTTSBEEE---EEEECTTCCCCHHHHHHHHHHHH
T ss_pred             HHcCCcccCCCccceEEEECCCCeEEE---EEecCCCCCCCHHHHHHHHHHHh
Confidence            12355     3579999994 554432   2223    357889998888764

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.53  E-value=2.3e-05  Score=61.84  Aligned_cols=74  Identities=8%  Similarity=0.077  Sum_probs=48.5

Q ss_pred             EEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCc---c-----c-ccCCCCCCceEEEEeCCCcccCceec-
Q 013976          301 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN---E-----H-HRAKSDGFPTILFFPAGNKSFDPINV-  370 (432)
Q Consensus       301 lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~---~-----~-~~~~i~~~P~i~~~~~g~~~~~~~~y-  370 (432)
                      +++|+++||++|+.+.+.|.++.        +.+..+|++.+   .     . ..+++.++|+++  .+|..+.   .+ 
T Consensus        29 vvvf~~~~Cp~C~~~~~~L~~~~--------i~~~~vdid~~~~~~~~~~~l~~~~g~~~vP~l~--i~G~~ig---g~~   95 (130)
T 2cq9_A           29 VVIFSKTSCSYCTMAKKLFHDMN--------VNYKVVELDLLEYGNQFQDALYKMTGERTVPRIF--VNGTFIG---GAT   95 (130)
T ss_dssp             EEEEECSSCSHHHHHHHHHHHHT--------CCCEEEETTTSTTHHHHHHHHHHHHSSCCSSEEE--ETTEEEE---EHH
T ss_pred             EEEEEcCCChHHHHHHHHHHHcC--------CCcEEEECcCCcCcHHHHHHHHHHhCCCCcCEEE--ECCEEEc---ChH
Confidence            45599999999999999998872        44556777765   2     1 356899999984  3665431   21 


Q ss_pred             --cCCCCHHHHHHHHHhcC
Q 013976          371 --DVDRTVVALYKFLKKNA  387 (432)
Q Consensus       371 --~g~~~~~~l~~fi~~~~  387 (432)
                        .+......|.++|++..
T Consensus        96 ~l~~~~~~~~L~~~L~~~g  114 (130)
T 2cq9_A           96 DTHRLHKEGKLLPLVHQCY  114 (130)
T ss_dssp             HHHHHHHHTSSHHHHHHHS
T ss_pred             HHHHHHHcCcHHHHHHHcC
Confidence              11223445677777653

>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}

Probab=97.51  E-value=0.00016  Score=54.41  Aligned_cols=71  Identities=14%  Similarity=0.129  Sum_probs=49.9

Q ss_pred             CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCcc--c-----c----cCCCCCCceEEEEeCCCccc
Q 013976          297 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--H-----H----RAKSDGFPTILFFPAGNKSF  365 (432)
Q Consensus       297 ~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~--~-----~----~~~i~~~P~i~~~~~g~~~~  365 (432)
                      +...+++|+++||++|+.+.+.+.++        ++.+-.+|++..+  .     .    ..+..++|++++  +|.   
T Consensus        20 ~~~~v~ly~~~~Cp~C~~ak~~L~~~--------~i~y~~vdI~~~~~~~~~~~~~~l~~~~g~~~vP~l~i--~~~---   86 (103)
T 3nzn_A           20 DRGKVIMYGLSTCVWCKKTKKLLTDL--------GVDFDYVYVDRLEGKEEEEAVEEVRRFNPSVSFPTTII--NDE---   86 (103)
T ss_dssp             CCSCEEEEECSSCHHHHHHHHHHHHH--------TBCEEEEEGGGCCHHHHHHHHHHHHHHCTTCCSCEEEE--TTT---
T ss_pred             CCCeEEEEcCCCCchHHHHHHHHHHc--------CCCcEEEEeeccCcccHHHHHHHHHHhCCCCccCEEEE--CCC---
Confidence            45567889999999999999999887        2445556665421  1     1    147899999876  331   


Q ss_pred             CceeccCCCCHHHHHHHH
Q 013976          366 DPINVDVDRTVVALYKFL  383 (432)
Q Consensus       366 ~~~~y~g~~~~~~l~~fi  383 (432)
                         .+.|+.+.+.|.++|
T Consensus        87 ---~~igg~~~~~l~~~L  101 (103)
T 3nzn_A           87 ---KAIVGFKEKEIRESL  101 (103)
T ss_dssp             ---EEEESCCHHHHHHHT
T ss_pred             ---EEEEcCCHHHHHHHh
Confidence               345678888888776

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=97.50  E-value=0.00067  Score=58.66  Aligned_cols=96  Identities=11%  Similarity=0.108  Sum_probs=73.1

Q ss_pred             CCc-ceEEEEEeC-cchhhhHHHHHHHHHhccCc-eEEEEEecCCc--------------------------ccccchhh
Q 013976          168 PIK-NQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNE--------------------------DVGKPVSE  218 (432)
Q Consensus       168 ~~~-~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~-i~f~~vd~~~~--------------------------~~~~~l~~  218 (432)
                      +++ +++.|+++| +.|....+.+.+++++|.++ +.|+.|+++..                          +....+.+
T Consensus        58 gk~~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~  137 (218)
T 3u5r_E           58 DSPALLVAFISNRCPFVVLIREALAKFAGDYAGQGLAVVAINSNDAQAFPEETLERVGAEVKAYGYGFPYLKDASQSVAK  137 (218)
T ss_dssp             TCSEEEEEECCSSCHHHHTTHHHHHHHHHHHTTTTEEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECTTCHHHH
T ss_pred             CCCeEEEEEECCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCcccccccCCHHHHHHHHHHhCCCccEEECCccHHHH
Confidence            444 677888999 89999999999999999875 88999988421                          11357789


Q ss_pred             hhCCCCCCCcEEEEEeCCCCceec---------CCCCCCHHHHHHHHHHHhcCCcC
Q 013976          219 YFGITGEAPKVLAYTGNDDAKKHI---------LDGELTLDKIKTFGEDFLEGKLK  265 (432)
Q Consensus       219 ~~~i~~~~~P~i~i~~~~~~~~y~---------~~~~~~~~~i~~fi~~~~~g~l~  265 (432)
                      .||+...  |++++++.+....|.         ..+..+.+.|.+.|+.++.|+-.
T Consensus       138 ~~~v~~~--P~~~liD~~G~i~~~g~~d~~~~~~~~~~~~~~l~~~i~~ll~~~~~  191 (218)
T 3u5r_E          138 AYGAACT--PDFFLYDRERRLVYHGQFDDARPGNGKDVTGADLRAAVDAVLKGKDV  191 (218)
T ss_dssp             HHTCCEE--SEEEEECTTCBEEEEECSSSCCTTSCCCCCCHHHHHHHHHHHTTCCC
T ss_pred             HcCCCCC--CeEEEECCCCcEEEeccccccccccccccCHHHHHHHHHHHHcCCCC
Confidence            9999887  999898766544443         12346789999999999987643

>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}

Probab=97.49  E-value=0.00016  Score=60.52  Aligned_cols=86  Identities=8%  Similarity=0.025  Sum_probs=60.2

Q ss_pred             CCcEEEEEe-CCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc-----------------------ccCCCCC-
Q 013976          297 SKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----------------------HRAKSDG-  351 (432)
Q Consensus       297 ~~~~lv~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-----------------------~~~~i~~-  351 (432)
                      ++++||+|| +.||..|....+.+.++...|+.. ++.++.|.++....                       ..|++.. 
T Consensus        51 Gk~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~~-~~~vv~Vs~D~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~~  129 (179)
T 3ixr_A           51 NQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQI-NATVLGVSRDSVKSHDSFCAKQGFTFPLVSDSDAILCKAFDVIKE  129 (179)
T ss_dssp             TSEEEEEECSCTTSHHHHHHHHHHHHHHHHHHTT-TEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTCHHHHHTTCEEE
T ss_pred             CCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHC-CCEEEEEcCCCHHHHHHHHHHcCCceEEEECCchHHHHHcCCccc
Confidence            567888887 999999999999999999999864 68888887764221                       1234432 


Q ss_pred             -----------CceEEEE-eCCCcccCceeccC---CCCHHHHHHHHHhc
Q 013976          352 -----------FPTILFF-PAGNKSFDPINVDV---DRTVVALYKFLKKN  386 (432)
Q Consensus       352 -----------~P~i~~~-~~g~~~~~~~~y~g---~~~~~~l~~fi~~~  386 (432)
                                 .|+.+++ ++|..+.   .+.+   ....+.+++.|++.
T Consensus       130 ~~~~g~~~~~~~p~~~lID~~G~I~~---~~~~~~~~~~~~~il~~l~~l  176 (179)
T 3ixr_A          130 KTMYGRQVIGIERSTFLIGPTHRIVE---AWRQVKVPGHAEEVLNKLKAH  176 (179)
T ss_dssp             ECCC--CEEEECCEEEEECTTSBEEE---EECSCCSTTHHHHHHHHHHHH
T ss_pred             ccccCcccCCcceEEEEECCCCEEEE---EEcCCCCCCCHHHHHHHHHHH
Confidence                       5888888 5555432   2333   44567788777754

>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}

Probab=97.48  E-value=7.8e-05  Score=54.73  Aligned_cols=68  Identities=12%  Similarity=0.091  Sum_probs=47.8

Q ss_pred             EEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCcc--------c---ccCCCCCCceEEEEeCCCcccCce
Q 013976          300 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--------H---HRAKSDGFPTILFFPAGNKSFDPI  368 (432)
Q Consensus       300 ~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~--------~---~~~~i~~~P~i~~~~~g~~~~~~~  368 (432)
                      .+++|+++||++|+.+...+.++.        +.+-.+|++..+        .   ..+++.++|++++  +|.      
T Consensus        13 ~v~ly~~~~Cp~C~~~~~~L~~~g--------i~~~~~~v~~~~~~~~~~~~~~l~~~~g~~~vP~l~~--~g~------   76 (92)
T 3ic4_A           13 EVLMYGLSTCPHCKRTLEFLKREG--------VDFEVIWIDKLEGEERKKVIEKVHSISGSYSVPVVVK--GDK------   76 (92)
T ss_dssp             SSEEEECTTCHHHHHHHHHHHHHT--------CCCEEEEGGGCCHHHHHHHHHHHHHHHSSSCSCEEEE--TTE------
T ss_pred             eEEEEECCCChHHHHHHHHHHHcC--------CCcEEEEeeeCCccchHHHHHHHHHhcCCCCcCEEEE--CCE------
Confidence            367799999999999998888872        334445555211        1   2457889999987  442      


Q ss_pred             eccCCCCHHHHHHHHH
Q 013976          369 NVDVDRTVVALYKFLK  384 (432)
Q Consensus       369 ~y~g~~~~~~l~~fi~  384 (432)
                       ..++.+.+.|.++|.
T Consensus        77 -~i~G~~~~~l~~~l~   91 (92)
T 3ic4_A           77 -HVLGYNEEKLKELIR   91 (92)
T ss_dssp             -EEESCCHHHHHHHHH
T ss_pred             -EEeCCCHHHHHHHhc
Confidence             234568999999885

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}

Probab=97.48  E-value=0.00012  Score=53.30  Aligned_cols=54  Identities=19%  Similarity=0.369  Sum_probs=39.7

Q ss_pred             EEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCC--Cccc--ccC-CCCCCceEEEEeCCCc
Q 013976          300 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT--TNEH--HRA-KSDGFPTILFFPAGNK  363 (432)
Q Consensus       300 ~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~--~~~~--~~~-~i~~~P~i~~~~~g~~  363 (432)
                      .+++|+++||++|+.+.+.+.++        .+.+..+|++  ....  ..+ ++.++|+++  .+|..
T Consensus         7 ~v~~y~~~~C~~C~~~~~~L~~~--------~i~~~~vdv~~~~~~~l~~~~~~~~~vP~l~--~~g~~   65 (89)
T 2klx_A            7 EIILYTRPNCPYCKRARDLLDKK--------GVKYTDIDASTSLRQEMVQRANGRNTFPQIF--IGDYH   65 (89)
T ss_dssp             CEEEESCSCCTTTHHHHHHHHHH--------TCCEEEECSCHHHHHHHHHHHHSSCCSCEEE--ETTEE
T ss_pred             eEEEEECCCChhHHHHHHHHHHc--------CCCcEEEECCHHHHHHHHHHhCCCCCcCEEE--ECCEE
Confidence            47789999999999999988876        3567778887  1111  346 899999984  35543

>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*

Probab=97.46  E-value=0.00018  Score=51.33  Aligned_cols=66  Identities=12%  Similarity=0.159  Sum_probs=45.9

Q ss_pred             EEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc------ccCCCCCCceEEEEeCCCcccCceeccCCC
Q 013976          301 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------HRAKSDGFPTILFFPAGNKSFDPINVDVDR  374 (432)
Q Consensus       301 lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~------~~~~i~~~P~i~~~~~g~~~~~~~~y~g~~  374 (432)
                      +++|+++||++|+.+.+.+.++        ++.+..+|++.+..      ..+++.++|+++  .+|..+      .   
T Consensus         3 i~~y~~~~C~~C~~~~~~l~~~--------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~l~--~~g~~i------~---   63 (82)
T 1fov_A            3 VEIYTKETCPYCHRAKALLSSK--------GVSFQELPIDGNAAKREEMIKRSGRTTVPQIF--IDAQHI------G---   63 (82)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH--------TCCCEEEECTTCSHHHHHHHHHHSSCCSCEEE--ETTEEE------E---
T ss_pred             EEEEECCCChhHHHHHHHHHHC--------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCEEE------e---
Confidence            6789999999999999888875        35566778776533      246889999984  355432      2   


Q ss_pred             CHHHHHHHHHh
Q 013976          375 TVVALYKFLKK  385 (432)
Q Consensus       375 ~~~~l~~fi~~  385 (432)
                      ....|.+++++
T Consensus        64 g~~~i~~~~~~   74 (82)
T 1fov_A           64 GYDDLYALDAR   74 (82)
T ss_dssp             SHHHHHHHHHT
T ss_pred             CHHHHHHHHHC
Confidence            23566666654

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*

Probab=97.45  E-value=1.9e-05  Score=63.66  Aligned_cols=76  Identities=8%  Similarity=0.105  Sum_probs=46.2

Q ss_pred             EEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCc---cc------ccCCCCCCceEEEEeCCCcccCceecc
Q 013976          301 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN---EH------HRAKSDGFPTILFFPAGNKSFDPINVD  371 (432)
Q Consensus       301 lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~---~~------~~~~i~~~P~i~~~~~g~~~~~~~~y~  371 (432)
                      +++|+++||++|+.+.+.|.+++        +.+..+|++.+   ..      ..+++.++|+++  .+|..+...-...
T Consensus        51 Vvvf~~~~Cp~C~~~k~~L~~~~--------i~~~~vdId~~~~~~~~~~~L~~~~g~~tvP~if--i~G~~igG~d~l~  120 (146)
T 2ht9_A           51 VVIFSKTSCSYCTMAKKLFHDMN--------VNYKVVELDLLEYGNQFQDALYKMTGERTVPRIF--VNGTFIGGATDTH  120 (146)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHT--------CCCEEEEGGGCTTHHHHHHHHHHHHSCCCSCEEE--ETTEEEESHHHHH
T ss_pred             EEEEECCCChhHHHHHHHHHHcC--------CCeEEEECccCcCCHHHHHHHHHHhCCCCcCeEE--ECCEEEeCchHHH
Confidence            45599999999999999998872        34455666654   21      356899999984  4664431000011


Q ss_pred             CCCCHHHHHHHHHhc
Q 013976          372 VDRTVVALYKFLKKN  386 (432)
Q Consensus       372 g~~~~~~l~~fi~~~  386 (432)
                      +......|.++|++.
T Consensus       121 ~l~~~g~L~~~L~~~  135 (146)
T 2ht9_A          121 RLHKEGKLLPLVHQC  135 (146)
T ss_dssp             HHHHTTCHHHHHHHT
T ss_pred             HHHHcChHHHHHHHc
Confidence            112233466666654

>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0

Probab=97.42  E-value=0.00013  Score=54.37  Aligned_cols=57  Identities=11%  Similarity=0.111  Sum_probs=43.2

Q ss_pred             CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--cc----C-CCCCCceEEEEeCCCc
Q 013976          297 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HR----A-KSDGFPTILFFPAGNK  363 (432)
Q Consensus       297 ~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~----~-~i~~~P~i~~~~~g~~  363 (432)
                      +..-+++|+++||+.|+.+...|.++        ++.+..+|++.++.  ..    . +..++|++  |-+|..
T Consensus        14 ~~~~v~vy~~~~Cp~C~~ak~~L~~~--------~i~y~~idI~~~~~~~~~l~~~~~g~~~vP~i--fi~g~~   77 (99)
T 3qmx_A           14 VSAKIEIYTWSTCPFCMRALALLKRK--------GVEFQEYCIDGDNEAREAMAARANGKRSLPQI--FIDDQH   77 (99)
T ss_dssp             CCCCEEEEECTTCHHHHHHHHHHHHH--------TCCCEEEECTTCHHHHHHHHHHTTTCCCSCEE--EETTEE
T ss_pred             CCCCEEEEEcCCChhHHHHHHHHHHC--------CCCCEEEEcCCCHHHHHHHHHHhCCCCCCCEE--EECCEE
Confidence            45678889999999999999999887        36677788887654  22    2 78899987  446643

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=97.40  E-value=0.00034  Score=56.54  Aligned_cols=90  Identities=10%  Similarity=0.042  Sum_probs=58.9

Q ss_pred             ccCCCcceEEEEEeC-cchhhhHHHHHHHHH--hccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCcee
Q 013976          165 FESPIKNQLLLFAVS-NDSEKLLPVFEEAAK--SFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKH  241 (432)
Q Consensus       165 ~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~--~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y  241 (432)
                      ...+++++|.|+++| +.|+.+.+.+.+...  .+.+ ..|+.|+++.+  ...+...+++.+.  |++++++.++....
T Consensus        41 ~~~~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~~-~~fv~V~vD~e--~~~~~~~~~v~~~--PT~~f~~~~G~~v~  115 (151)
T 3ph9_A           41 QKSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQ-NKFIMLNLMHE--TTDKNLSPDGQYV--PRIMFVDPSLTVRA  115 (151)
T ss_dssp             HHHTCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHHH-HTCEEEEESSC--CSCGGGCTTCCCS--SEEEEECTTSCBCT
T ss_pred             HHcCCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHhh-cCeEEEEecCC--chhhHhhcCCCCC--CEEEEECCCCCEEE
Confidence            356778889999999 999999998876421  2212 23455555432  3355677888776  99999985554555


Q ss_pred             cCCCC-------CCHHHHHHHHHHH
Q 013976          242 ILDGE-------LTLDKIKTFGEDF  259 (432)
Q Consensus       242 ~~~~~-------~~~~~i~~fi~~~  259 (432)
                      ...|.       ...+.+.++++..
T Consensus       116 ~~~G~~~~~~~~~~~~~~~~ll~~~  140 (151)
T 3ph9_A          116 DIAGRYSNRLYTYEPRDLPLLIENM  140 (151)
T ss_dssp             TCCCSCTTSTTCCCGGGHHHHHHHH
T ss_pred             EEeCCcCCcccccchhhHHHHHHHH
Confidence            56665       5556555555554

>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A

Probab=97.39  E-value=0.00085  Score=55.45  Aligned_cols=91  Identities=9%  Similarity=0.071  Sum_probs=65.4

Q ss_pred             CCcEEEEEeCCCCh-hhhhhHHHHHHHHHHhcCC-CCEEEEEEeCCCccc------------------------------
Q 013976          297 SKDVLLEIYAPWCG-HCQAFEPTYNKLAKHLRGV-DSIVIAKMDGTTNEH------------------------------  344 (432)
Q Consensus       297 ~~~~lv~f~~~~c~-~c~~~~~~~~~la~~~~~~-~~~~~~~id~~~~~~------------------------------  344 (432)
                      ++++||.||++||. .|....+.+.++...+... .++.++.|.++..+.                              
T Consensus        28 Gk~vll~F~~t~C~~~C~~~~~~l~~~~~~~~~~~~~~~vv~is~d~~d~~~~~~~~~~~~~~~~~~w~~l~~~~~~~~~  107 (170)
T 3me7_A           28 GKPIILSPIYTHCRAACPLITKSLLKVIPKLGTPGKDFWVITFTFDPKDTLEDIKRFQKEYGIDGKGWKVVKAKTSEDLF  107 (170)
T ss_dssp             TSCEEEEEECTTCCSHHHHHHHHHHTTHHHHCCBTTTBEEEEEECCTTCCHHHHHHHHHHTTCCSSSEEEEEESSHHHHH
T ss_pred             CCEEEEEEECCCCCchhHHHHHHHHHHHHHhhhcCCceEEEEEECCCCCCHHHHHHHHHHcCCCCCCeEEEeCCCHHHHH
Confidence            68999999999997 6999999999999999642 357777777652110                              


Q ss_pred             ---ccCC---------CCCCceEEEE-eCCCcccCceeccC-CCCHHHHHHHHHhcCCCC
Q 013976          345 ---HRAK---------SDGFPTILFF-PAGNKSFDPINVDV-DRTVVALYKFLKKNASIP  390 (432)
Q Consensus       345 ---~~~~---------i~~~P~i~~~-~~g~~~~~~~~y~g-~~~~~~l~~fi~~~~~~~  390 (432)
                         ..++         +...|+++++ ++|+.+.   .|.| ..+.+.|.+.|++.....
T Consensus       108 ~~~~~~g~~~~~~~~~~~~~~~~~lID~~G~i~~---~~~g~~~~~~~i~~~l~~~~~~~  164 (170)
T 3me7_A          108 KLLDAIDFRFMTAGNDFIHPNVVVVLSPELQIKD---YIYGVNYNYLEFVNALRLARGEG  164 (170)
T ss_dssp             HHHHHTTCCCEEETTEEECCCEEEEECTTSBEEE---EEESSSCCHHHHHHHHHHHTTCS
T ss_pred             HHHHHCCeEEecCCCccccCceEEEECCCCeEEE---EEeCCCCCHHHHHHHHHHhhccc
Confidence               0111         3455788888 5555432   4566 578999999999887643

>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*

Probab=97.39  E-value=2e-05  Score=61.04  Aligned_cols=57  Identities=14%  Similarity=0.272  Sum_probs=41.1

Q ss_pred             EEEEeCCCChhhhhh-HHHHHHHHHHhcCCCCEEEEEEeCCCccc---------ccCCCCCCceEEEEeCCCcc
Q 013976          301 LLEIYAPWCGHCQAF-EPTYNKLAKHLRGVDSIVIAKMDGTTNEH---------HRAKSDGFPTILFFPAGNKS  364 (432)
Q Consensus       301 lv~f~~~~c~~c~~~-~~~~~~la~~~~~~~~~~~~~id~~~~~~---------~~~~i~~~P~i~~~~~g~~~  364 (432)
                      +++|+++||++|+.+ .+.+.+++.     ..+.+..+|++.++.         ..+++.++|++  |.+|+.+
T Consensus        27 Vvvf~~~~Cp~C~~alk~~L~~~~~-----~~i~~~~vdid~~~~~~~~~~~l~~~~g~~tvP~v--fi~g~~i   93 (118)
T 3c1r_A           27 IFVASKTYCPYCHAALNTLFEKLKV-----PRSKVLVLQLNDMKEGADIQAALYEINGQRTVPNI--YINGKHI   93 (118)
T ss_dssp             EEEEECSSCHHHHHHHHHHHTTSCC-----CGGGEEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE--EETTEEE
T ss_pred             EEEEEcCCCcCHHHHHHHHHHHcCC-----CCCCeEEEECccCCChHHHHHHHHHHhCCCCcCEE--EECCEEE
Confidence            667999999999998 777766531     137777888876641         35688999987  5566543

>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A

Probab=97.37  E-value=0.00021  Score=62.98  Aligned_cols=87  Identities=11%  Similarity=0.077  Sum_probs=62.3

Q ss_pred             CCc-EEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCcc--------------------------c---cc
Q 013976          297 SKD-VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--------------------------H---HR  346 (432)
Q Consensus       297 ~~~-~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~--------------------------~---~~  346 (432)
                      ++. +|++|+++||..|....+.|.+++..|++. ++.++.|+++...                          .   ..
T Consensus        33 GK~vVL~~fpa~~CpvC~tEl~~l~~l~~ef~~~-gv~VI~VS~Ds~~~~~~w~~~~~~~~~~~i~fPil~D~~~~ia~~  111 (249)
T 3a2v_A           33 GKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRL-GVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVARR  111 (249)
T ss_dssp             TCEEEEECCSCTTCHHHHHHHHHHHHTHHHHHHT-TEEEEEEESSCHHHHHHHHHHHHHHTCCCCCSCEEECTTSHHHHH
T ss_pred             CCEEEEEEEcCCCCcChHHHHHHHHHHHHHHHhC-CcEEEEEECCCHHHHHHHHHHHHHhcCCCCceeEEECCchHHHHH
Confidence            454 566789999999999999999999999863 6888888886421                          0   23


Q ss_pred             CCCC-------CCceEEEE-eCCCcccCceeccC----CCCHHHHHHHHHhcC
Q 013976          347 AKSD-------GFPTILFF-PAGNKSFDPINVDV----DRTVVALYKFLKKNA  387 (432)
Q Consensus       347 ~~i~-------~~P~i~~~-~~g~~~~~~~~y~g----~~~~~~l~~fi~~~~  387 (432)
                      |++.       .+|+++++ ++|....   .+.|    +++.+.|...|+...
T Consensus       112 ygv~~~~~g~~~~p~~fIID~dG~I~~---~~~~~~~~gr~~~Ellr~I~alq  161 (249)
T 3a2v_A          112 LGLLHAESATHTVRGVFIVDARGVIRT---MLYYPMELGRLVDEILRIVKALK  161 (249)
T ss_dssp             HTCCCTTCSSSCCEEEEEECTTSBEEE---EEEECTTBCCCHHHHHHHHHHHH
T ss_pred             hCCccccCCCcccceEEEECCCCeEEE---EEecCCcccchhHHHHHHHHHHH
Confidence            4565       89999999 4554431   2222    368888888887653

>2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.34  E-value=0.0028  Score=52.51  Aligned_cols=99  Identities=14%  Similarity=0.103  Sum_probs=69.2

Q ss_pred             ccchhhhhc-------CCCcEEEEEeCCCChhhhhhHHHH---HHHHHHhcCCCCEEEEEEeCCCcc-------------
Q 013976          287 NNFDEIVLD-------ESKDVLLEIYAPWCGHCQAFEPTY---NKLAKHLRGVDSIVIAKMDGTTNE-------------  343 (432)
Q Consensus       287 ~~~~~~~~~-------~~~~~lv~f~~~~c~~c~~~~~~~---~~la~~~~~~~~~~~~~id~~~~~-------------  343 (432)
                      .+|.+.+..       ..|.++|+++++||..|..+....   .++...++.  ++.+..+|++..+             
T Consensus        38 gs~~~Al~~A~~~~k~e~K~LlVyLhs~~~~~~~~f~~~~L~~~~V~~~l~~--nfV~w~~dv~~~e~~~~~~~~~~~~~  115 (178)
T 2ec4_A           38 GSLEAAFQEAFYVKARDRKLLAIYLHHDESVLTNVFCSQMLCAESIVSYLSQ--NFITWAWDLTKDSNRARFLTMCNRHF  115 (178)
T ss_dssp             SCHHHHHHTTTSSCTTTCCEEEEEEECSSCSHHHHHHHHTTTCHHHHHHHHH--TEEEEEEECCSHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHhhhhhhCcEEEEEEeCCCCccHHHHHHHhcCCHHHHHHHHc--CEEEEEEeCCCchhhhhhhhhhhhhh
Confidence            566665532       358899999999999998886332   235555555  6999999998776             


Q ss_pred             c-------ccCCCCCCceEEEEe-CCCcccCceeccCCCCHHHHHHHHHhcC
Q 013976          344 H-------HRAKSDGFPTILFFP-AGNKSFDPINVDVDRTVVALYKFLKKNA  387 (432)
Q Consensus       344 ~-------~~~~i~~~P~i~~~~-~g~~~~~~~~y~g~~~~~~l~~fi~~~~  387 (432)
                      .       ..+.+.++|++.++. .+....-.-...|..+.+.+++.|.+..
T Consensus       116 g~~~a~~~~~~~~~~~P~l~ii~~~~~~~~vl~~~~G~~~~~~ll~~L~~~~  167 (178)
T 2ec4_A          116 GSVVAQTIRTQKTDQFPLFLIIMGKRSSNEVLNVIQGNTTVDELMMRLMAAM  167 (178)
T ss_dssp             CHHHHHHHHHSCSTTCSEEEEECCCSSCCCEEEEECSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcCCCCCCeEEEEEcCCCceEEEEEEeCCCCHHHHHHHHHHHH
Confidence            1       127999999999993 3322111125789999999888876543

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=97.34  E-value=0.00051  Score=54.86  Aligned_cols=69  Identities=10%  Similarity=0.043  Sum_probs=55.4

Q ss_pred             CCCcceEEEEEeC-cchhhhHHHHHHHHHhcc--CceEEEEEecCCcc---------------------cccchhhhhCC
Q 013976          167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFK--GKLIFVYVQMDNED---------------------VGKPVSEYFGI  222 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~--~~i~f~~vd~~~~~---------------------~~~~l~~~~~i  222 (432)
                      .++++++.|+++| +.|+...+.+.++++++.  +.+.++.|+++...                     ....+++.||+
T Consensus        27 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  106 (144)
T 1i5g_A           27 AGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDV  106 (144)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCccccccCchHHHHHHHHHcCC
Confidence            4567788899999 999999999999999998  47888888887521                     02467889999


Q ss_pred             CCCCCcEEEEEe-CCC
Q 013976          223 TGEAPKVLAYTG-NDD  237 (432)
Q Consensus       223 ~~~~~P~i~i~~-~~~  237 (432)
                      ...  |++++++ .++
T Consensus       107 ~~~--P~~~lid~~~G  120 (144)
T 1i5g_A          107 KSI--PTLVGVEADSG  120 (144)
T ss_dssp             CSS--SEEEEEETTTC
T ss_pred             CCC--CEEEEEECCCC
Confidence            887  9999997 443

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}

Probab=97.33  E-value=0.001  Score=54.72  Aligned_cols=94  Identities=10%  Similarity=0.037  Sum_probs=70.0

Q ss_pred             CCcceEEEEEeC-cc-hhhhHHHHHHHHHhcc-----CceEEEEEecCCccc-------------------------ccc
Q 013976          168 PIKNQLLLFAVS-ND-SEKLLPVFEEAAKSFK-----GKLIFVYVQMDNEDV-------------------------GKP  215 (432)
Q Consensus       168 ~~~~~i~~~~~~-~~-~~~~~~~~~~~a~~~~-----~~i~f~~vd~~~~~~-------------------------~~~  215 (432)
                      ++.+++.|++.| ++ |....+.+.+++.+|.     ..+.++.|.++....                         ...
T Consensus        26 gk~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~  105 (171)
T 2rli_A           26 GQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYVQDFHPRLLGLTGSTKQVAQ  105 (171)
T ss_dssp             TSEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHHHHHHHTTCTTCCEEECCHHHHHH
T ss_pred             CCEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHHH
Confidence            556778888999 77 9999999999999995     368888887763100                         114


Q ss_pred             hhhhhCCCCCC-------------CcEEEEEeCCCCceecCCCCCCHHHHHHHHHHHhc
Q 013976          216 VSEYFGITGEA-------------PKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  261 (432)
Q Consensus       216 l~~~~~i~~~~-------------~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  261 (432)
                      +++.||+...+             .|++++++.++...+.+.|..+.+.|.+.|+.++.
T Consensus       106 ~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~  164 (171)
T 2rli_A          106 ASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDYYGRSRSAEQISDSVRRHMA  164 (171)
T ss_dssp             HHHHSCCCCEECCCCSSCCCCEECCCEEEEECTTSCEEEEEESSCCHHHHHHHHHHHHH
T ss_pred             HHHHhCeEEEecCCCCCCCeEEeccceEEEECCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence            67788887651             12777887666566667788899999999998875

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A

Probab=97.33  E-value=0.00045  Score=56.52  Aligned_cols=93  Identities=10%  Similarity=0.055  Sum_probs=69.9

Q ss_pred             CCCcceEEEEEeC-cc-hhhhHHHHHHHHHhccC-----ceEEEEEecCCccc-------------------------cc
Q 013976          167 SPIKNQLLLFAVS-ND-SEKLLPVFEEAAKSFKG-----KLIFVYVQMDNEDV-------------------------GK  214 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~-~~~~~~~~~~~a~~~~~-----~i~f~~vd~~~~~~-------------------------~~  214 (432)
                      .++.+++.|++.| ++ |....+.+.++..++.+     .+.++.|.++....                         ..
T Consensus        22 ~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~~~~~~~~~~~~~~~~l~~~~d~~~  101 (164)
T 2ggt_A           22 LGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVD  101 (164)
T ss_dssp             TTCEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTTCCHHHHHHHHHTTCSSCEEEECCHHHHH
T ss_pred             CCCEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHH
Confidence            3557778888999 87 99999999999999863     68888887764210                         11


Q ss_pred             chhhhhCCCCCCCc---------------EEEEEeCCCCceecCCCCCCHHHHHHHHHHHhc
Q 013976          215 PVSEYFGITGEAPK---------------VLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  261 (432)
Q Consensus       215 ~l~~~~~i~~~~~P---------------~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  261 (432)
                      .+.+.||+...  |               ++++++.++...+.+.|..+.+.|.+.|...+.
T Consensus       102 ~~~~~~~v~~~--p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~  161 (164)
T 2ggt_A          102 QVARAYRVYYS--PGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHMR  161 (164)
T ss_dssp             HHHHTTTCCEE--EEEECTTSCEEEEECCEEEEECTTSCEEEEEETTCCHHHHHHHHHHHHG
T ss_pred             HHHHhcCeEEE--ecCCCCCCCeeEeccceEEEECCCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence            36778888765  5               677777666566667788899999999998764

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=97.32  E-value=0.00077  Score=55.68  Aligned_cols=92  Identities=9%  Similarity=0.017  Sum_probs=65.1

Q ss_pred             CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCc-eEEEEEecCC--------cccccchh-h-----------------
Q 013976          167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDN--------EDVGKPVS-E-----------------  218 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~-i~f~~vd~~~--------~~~~~~l~-~-----------------  218 (432)
                      .++++++.||++| +.|. ..+.+.+++.+|.++ +.++.|+++.        .+....++ +                 
T Consensus        31 ~Gk~vll~F~a~wC~~C~-~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~d~~~~~~~~~~~~~~~~~p~~~d~d~~~~  109 (171)
T 3cmi_A           31 KGKVVLIVNVASKCGFTP-QYKELEALYKRYKDEGFTIIGFPCNQFGHQEPGSDEEIAQFCQLNYGVTFPIMKKIDVNGG  109 (171)
T ss_dssp             TTCEEEEEEEESSSCCHH-HHHHHHHHHHHHGGGTEEEEEEEECSCC------------------CCCSCBBCCCBSSST
T ss_pred             CCCEEEEEEEecCCCcch-hHHHHHHHHHHhccCCeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCceEEeeccCCCc
Confidence            4567788899999 8999 999999999999875 8888887631        00011222 1                 


Q ss_pred             ------------hhCCCCCCCc------EEEEEeCCCCceecCCCCCCHHHHHHHHHHHhc
Q 013976          219 ------------YFGITGEAPK------VLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  261 (432)
Q Consensus       219 ------------~~~i~~~~~P------~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  261 (432)
                                  .+|+.+.  |      +.++++.++...+.+.|..+.+.|.+.|+.++.
T Consensus       110 ~~~~~~~~~~~~~~~v~~~--P~i~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~  168 (171)
T 3cmi_A          110 NEDPVYKFLKSQKSGMLGL--RGIKWNFEKFLVDKKGKVYERYSSLTKPSSLSETIEELLK  168 (171)
T ss_dssp             TBCHHHHHHHHHSCCSSSC--CSCCSTTCEEEECSSSCEEEEECTTSCGGGGHHHHHHHHT
T ss_pred             cchHHHHHHHhccCCcCCC--CcccccceEEEECCCCCEEEEeCCCCCHHHHHHHHHHHHH
Confidence                        2455554  7      777777666666777888899999999998875

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=97.32  E-value=0.00052  Score=55.03  Aligned_cols=69  Identities=14%  Similarity=0.151  Sum_probs=55.2

Q ss_pred             CCCcceEEEEEeC-cchhhhHHHHHHHHHhcc--CceEEEEEecCCcc---------------------cccchhhhhCC
Q 013976          167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFK--GKLIFVYVQMDNED---------------------VGKPVSEYFGI  222 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~--~~i~f~~vd~~~~~---------------------~~~~l~~~~~i  222 (432)
                      .++++++.|+++| +.|+...+.+.++++++.  +.+.++.++++...                     ....+++.||+
T Consensus        27 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  106 (146)
T 1o8x_A           27 AGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNV  106 (146)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEEccCCHHHHHHHHHHHHHHHHhhhcCCeEEEEEeCCCCHHHHHHHHHHCCceeeccchhhHHHHHHHHhCC
Confidence            4557788899999 999999999999999998  46888888887521                     12467889999


Q ss_pred             CCCCCcEEEEEe-CCC
Q 013976          223 TGEAPKVLAYTG-NDD  237 (432)
Q Consensus       223 ~~~~~P~i~i~~-~~~  237 (432)
                      ...  |++++++ .++
T Consensus       107 ~~~--Pt~~lid~~~G  120 (146)
T 1o8x_A          107 ESI--PTLIGVDADSG  120 (146)
T ss_dssp             CSS--SEEEEEETTTC
T ss_pred             CCC--CEEEEEECCCC
Confidence            887  9999997 443

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=97.32  E-value=0.00063  Score=55.94  Aligned_cols=68  Identities=12%  Similarity=0.101  Sum_probs=55.3

Q ss_pred             CCCcceEEEEEeC-cchhhhHHHHHHHHHhccC--ceEEEEEecCCccc---------------------ccchhhhhCC
Q 013976          167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG--KLIFVYVQMDNEDV---------------------GKPVSEYFGI  222 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~--~i~f~~vd~~~~~~---------------------~~~l~~~~~i  222 (432)
                      .+++++|.||++| +.|+...+.+.+++++|.+  .+.|+.|+++....                     ...+++.|++
T Consensus        47 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v  126 (165)
T 3s9f_A           47 SGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEEDDFNAYYAKMPWLSIPFANRNIVEALTKKYSV  126 (165)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEECCcChhHHHHHHHHHHHHHHhccCCCeEEEEEecCCCHHHHHHHHHhCCCcccccCchhHHHHHHHHcCC
Confidence            4567788899999 9999999999999999985  68888888776410                     0578899999


Q ss_pred             CCCCCcEEEEEeCC
Q 013976          223 TGEAPKVLAYTGND  236 (432)
Q Consensus       223 ~~~~~P~i~i~~~~  236 (432)
                      ...  |++++++.+
T Consensus       127 ~~~--Pt~~lid~~  138 (165)
T 3s9f_A          127 ESI--PTLIGLNAD  138 (165)
T ss_dssp             CSS--SEEEEEETT
T ss_pred             CCC--CEEEEEeCC
Confidence            887  999999865

>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}

Probab=97.28  E-value=0.00033  Score=59.99  Aligned_cols=43  Identities=23%  Similarity=0.191  Sum_probs=37.0

Q ss_pred             CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCC
Q 013976          296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT  340 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~  340 (432)
                      .++.+||.||++||++| ...|.|.++...|++. ++.+.-|+++
T Consensus        37 kGKvvll~F~At~C~~c-~e~p~L~~l~~~~~~~-g~~vlgvs~d   79 (207)
T 2r37_A           37 AGKYVLFVNVASYGGLT-GQYIELNALQEELAPF-GLVILGFPCN   79 (207)
T ss_dssp             TTSEEEEEEECSSSTTT-THHHHHHHHHHHHGGG-TEEEEEEECC
T ss_pred             CCCEEEEEEeCCCCCCh-HHHHHHHHHHHHhccC-CEEEEEEECc
Confidence            36799999999999999 5788999999999864 6888888865

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=97.26  E-value=0.0006  Score=54.38  Aligned_cols=66  Identities=15%  Similarity=0.158  Sum_probs=53.6

Q ss_pred             CCCcceEEEEEeC-cchhhhHHHHHHHHHhcc--CceEEEEEecCCcc---------------------cccchhhhhCC
Q 013976          167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFK--GKLIFVYVQMDNED---------------------VGKPVSEYFGI  222 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~--~~i~f~~vd~~~~~---------------------~~~~l~~~~~i  222 (432)
                      .++++++.|+++| +.|+...+.+.++++++.  +.+.++.++++...                     ....+++.||+
T Consensus        27 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  106 (144)
T 1o73_A           27 VGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGV  106 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHTC
T ss_pred             CCCEEEEEEECcCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCceEeeccchhHHHHHHHHcCC
Confidence            4557788899999 899999999999999998  46888888877521                     02467889999


Q ss_pred             CCCCCcEEEEEe
Q 013976          223 TGEAPKVLAYTG  234 (432)
Q Consensus       223 ~~~~~P~i~i~~  234 (432)
                      ...  |++++++
T Consensus       107 ~~~--Pt~~lid  116 (144)
T 1o73_A          107 ESI--PTLITIN  116 (144)
T ss_dssp             CSS--SEEEEEE
T ss_pred             CCC--CEEEEEE
Confidence            887  9999998

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}

Probab=97.25  E-value=0.00024  Score=63.77  Aligned_cols=75  Identities=15%  Similarity=0.099  Sum_probs=58.9

Q ss_pred             cceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcc---cccchhhhhCCCCCCCcEEEEEeCCCCceecCCC
Q 013976          170 KNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED---VGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDG  245 (432)
Q Consensus       170 ~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~---~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~  245 (432)
                      ..+++||++| ++|+.+.+.++++|+++.      .+|++..+   .++++++.+|+++.  |++.+  ++  +.  +.|
T Consensus       199 ~~vV~F~A~WC~~Ck~l~p~le~lA~~l~------~Vd~d~~d~~~~~~~la~~~gI~~v--PT~~i--~G--~~--~~G  264 (291)
T 3kp9_A          199 IGGTMYGAYWCPHCQDQKELFGAAFDQVP------YVECSPNGPGTPQAQECTEAGITSY--PTWII--NG--RT--YTG  264 (291)
T ss_dssp             TTCEEEECTTCHHHHHHHHHHGGGGGGSC------EEESCSSCSSSCCCHHHHTTTCCST--TEEEE--TT--EE--EES
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHHHHHcC------EEEEeecCchhhHHHHHHHcCCccc--CeEEE--CC--EE--ecC
Confidence            3478999999 999999999999998763      45665211   16789999999998  99755  33  33  689


Q ss_pred             CCCHHHHHHHHHH
Q 013976          246 ELTLDKIKTFGED  258 (432)
Q Consensus       246 ~~~~~~i~~fi~~  258 (432)
                      ..+.+++.+|+.-
T Consensus       265 ~~~~~~L~~~l~~  277 (291)
T 3kp9_A          265 VRSLEALAVASGY  277 (291)
T ss_dssp             CCCHHHHHHHTCC
T ss_pred             CCCHHHHHHHHCC
Confidence            9999999999864

>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}

Probab=97.21  E-value=0.00045  Score=58.57  Aligned_cols=43  Identities=30%  Similarity=0.463  Sum_probs=39.0

Q ss_pred             CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCC
Q 013976          296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT  340 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~  340 (432)
                      +.+.+|+.|+++||++|+.+.+.+.++.+.+.+  ++.|..+++.
T Consensus        24 ~~~~~vv~f~d~~Cp~C~~~~~~l~~l~~~~~~--~v~~~~~~~~   66 (195)
T 3hd5_A           24 PGKIEVLEFFAYTCPHCAAIEPMVEDWAKTAPQ--DVVLKQVPIA   66 (195)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHTCCT--TEEEEEEECC
T ss_pred             CCCeEEEEEECCCCccHHHhhHHHHHHHHHCCC--CeEEEEEecc
Confidence            457899999999999999999999999999887  6999999986

>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A

Probab=97.20  E-value=0.00082  Score=56.88  Aligned_cols=41  Identities=29%  Similarity=0.514  Sum_probs=35.6

Q ss_pred             CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeC
Q 013976          297 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG  339 (432)
Q Consensus       297 ~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~  339 (432)
                      .+.+|+.|+.+||++|..+.+.+.++.+.+..  ++.|..+.+
T Consensus        22 ~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~--~v~~~~~p~   62 (195)
T 2znm_A           22 GKIEVLEFFGYFCVHCHHFDPLLLKLGKALPS--DAYLRTEHV   62 (195)
T ss_dssp             SSEEEEEEECTTSCCTTSSCHHHHHHHHHSCT--TEEEEEEEC
T ss_pred             CCcEEEEEECCCChhHHHHhHHHHHHHHHCCC--ceEEEEecc
Confidence            46789999999999999999999999998876  677777765

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=97.19  E-value=0.00087  Score=53.37  Aligned_cols=85  Identities=11%  Similarity=0.078  Sum_probs=61.8

Q ss_pred             CCcceEEEEEeC-cchhhhHHHHHH---HHHhccC-ceEEEEEecCCcccc---------------------cchhhhhC
Q 013976          168 PIKNQLLLFAVS-NDSEKLLPVFEE---AAKSFKG-KLIFVYVQMDNEDVG---------------------KPVSEYFG  221 (432)
Q Consensus       168 ~~~~~i~~~~~~-~~~~~~~~~~~~---~a~~~~~-~i~f~~vd~~~~~~~---------------------~~l~~~~~  221 (432)
                      ++++++.||++| ++|+...+.+.+   +.+++++ .+.++.++.+.....                     ..+.+.|+
T Consensus        31 gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  110 (142)
T 3eur_A           31 AEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELDEWKKHRNDFAKEWTNGYDKELVIKNKNLYD  110 (142)
T ss_dssp             CSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEECSSCHHHHHHHGGGSCTTSEEEECTTCHHHHTTCSC
T ss_pred             CCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccCCeEEEEEEcCCCHHHHHHHHHhcccccccccCccchhhhhhhcC
Confidence            457788899999 899999999999   9999964 588888887763100                     01356778


Q ss_pred             CCCCCCcEEEEEeCCCCceecCCCCCCHHHHHHHHH
Q 013976          222 ITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGE  257 (432)
Q Consensus       222 i~~~~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~  257 (432)
                      +...  |++++++.++...+.   ..+.+.|.+|++
T Consensus       111 v~~~--P~~~lid~~G~i~~~---~~~~~~l~~~l~  141 (142)
T 3eur_A          111 LRAI--PTLYLLDKNKTVLLK---DATLQKVEQYLA  141 (142)
T ss_dssp             CTTC--SEEEEECTTCBEEEE---EECHHHHHHHHH
T ss_pred             CCcC--CeEEEECCCCcEEec---CCCHHHHHHHHh
Confidence            8776  999888765533332   246788888875

>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A

Probab=97.19  E-value=0.00019  Score=58.56  Aligned_cols=90  Identities=13%  Similarity=0.183  Sum_probs=53.4

Q ss_pred             CCCcEEEEEe-CCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc-----------------------ccCCCC-
Q 013976          296 ESKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----------------------HRAKSD-  350 (432)
Q Consensus       296 ~~~~~lv~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-----------------------~~~~i~-  350 (432)
                      .++.++|.|| ++||++|....|.+.++...++.. ++.++.|+.+....                       ..|++. 
T Consensus        29 ~Gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~-~~~~v~vs~d~~~~~~~~~~~~~~~~p~l~D~~~~v~~~ygv~~  107 (157)
T 4g2e_A           29 KGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQV-NAVVLGISVDPPFSNKAFKEHNKLNFTILSDYNREVVKKYNVAW  107 (157)
T ss_dssp             TTSCEEEEECSCTTCCC------CCSCGGGGGGGC-SSEEEEEESSCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCEE
T ss_pred             CCCeEEEEecCCCCCCccccchhhccccccccccc-CceEeeecccchhHHHHHHHHcCCcEEEEEcCCcHHHHHcCCcc
Confidence            3578888888 999999999999999988888764 67777777664221                       112331 


Q ss_pred             ----------CCceEEEE-eCCCcccCce--eccCCCCHHHHHHHHHhc
Q 013976          351 ----------GFPTILFF-PAGNKSFDPI--NVDVDRTVVALYKFLKKN  386 (432)
Q Consensus       351 ----------~~P~i~~~-~~g~~~~~~~--~y~g~~~~~~l~~fi~~~  386 (432)
                                ..|+.+++ ++|......+  ...+..+.+.+.+.|+..
T Consensus       108 ~~~~~~~~~~~~p~tflID~~G~I~~~~~~~~~~~~~~~~eil~~l~~L  156 (157)
T 4g2e_A          108 EFPALPGYVLAKRAVFVIDKEGKVRYKWVSDDPTKEPPYDEIEKVVKSL  156 (157)
T ss_dssp             ECTTSTTCEEECEEEEEECTTSBEEEEEEESSTTCCCCHHHHHHHHHHT
T ss_pred             ccccCCCcceeeeeEEEECCCCEEEEEEECCCCCCCCCHHHHHHHHHHh
Confidence                      35777777 4454321001  123456788899888764

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=97.18  E-value=0.0012  Score=55.64  Aligned_cols=93  Identities=12%  Similarity=0.022  Sum_probs=67.7

Q ss_pred             CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCc-eEEEEEecCC--------cccccchh-hh----------------
Q 013976          167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDN--------EDVGKPVS-EY----------------  219 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~-i~f~~vd~~~--------~~~~~~l~-~~----------------  219 (432)
                      .++++++.|+++| +.|....+.+.+++++|.++ +.++.|+++.        .+....++ +.                
T Consensus        47 ~Gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~D~~~~  126 (190)
T 2vup_A           47 KGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPCNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGE  126 (190)
T ss_dssp             TTSCEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTCEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCBSSST
T ss_pred             CCCEEEEEEecCCCCccHHHHHHHHHHHHHHhcCCeEEEEEEcCccCCCCCCCHHHHHHHHHHhcCCCeEEEeecccCcc
Confidence            4567788899999 99999999999999999875 8888888762        00011222 22                


Q ss_pred             -------------hCCCCCCCc------EEEEEeCCCCceecCCCCCCHHHHHHHHHHHhc
Q 013976          220 -------------FGITGEAPK------VLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  261 (432)
Q Consensus       220 -------------~~i~~~~~P------~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  261 (432)
                                   +|+.+.  |      +.++++.++...+.+.|..+.+.+.+.|...+.
T Consensus       127 ~~~~~~~~l~~~~~~v~~~--P~i~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~  185 (190)
T 2vup_A          127 NAHPLYEYMKKTKPGILKT--KAIKWNFTSFLIDRDGVPVERFSPGASVKDIEKKLIPLLE  185 (190)
T ss_dssp             TBCHHHHHHHHHSCCGGGC--CSCCSTTCEEEECTTSCEEEEECTTCCHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHhhcCCcCCC--ccccccceEEEECCCCcEEEEECCCCCHHHHHHHHHHHHh
Confidence                         244333  6      677777666566677888899999999999876

>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10

Probab=97.18  E-value=0.00048  Score=56.61  Aligned_cols=42  Identities=21%  Similarity=0.347  Sum_probs=36.4

Q ss_pred             CCcEEEEEe-CCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCC
Q 013976          297 SKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT  341 (432)
Q Consensus       297 ~~~~lv~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~  341 (432)
                      ++++||.|| +.||.+|....+.+.++...+ .  ++.++.|+++.
T Consensus        43 gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~-~--~v~vv~Is~d~   85 (165)
T 1q98_A           43 SKRKVLNIFPSIDTGVCATSVRKFNQQAAKL-S--NTIVLCISADL   85 (165)
T ss_dssp             TSEEEEEECSCSCSSCCCHHHHHHHHHHHHS-T--TEEEEEEESSC
T ss_pred             CCeEEEEEECCCCCCccHHHHHHHHHHHHHc-C--CCEEEEEeCCC
Confidence            578999998 899999999999999999998 3  68888888764

>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A

Probab=97.14  E-value=0.0029  Score=53.09  Aligned_cols=96  Identities=13%  Similarity=0.037  Sum_probs=65.8

Q ss_pred             CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCc-eEEEEEecCC--------cccccchhh-hh---------------
Q 013976          167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDN--------EDVGKPVSE-YF---------------  220 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~-i~f~~vd~~~--------~~~~~~l~~-~~---------------  220 (432)
                      .+++++|.|+++| +.|....+.+.+++++|+++ +.++.|.++.        .+....+++ .|               
T Consensus        45 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~e~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  124 (187)
T 3dwv_A           45 KGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPSNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGE  124 (187)
T ss_dssp             TTSCEEEEEECCBCSCCTTHHHHHHHHHHHHGGGTCEEEEEEBCCCSSCSSSBTTHHHHSCCBCCCCSSCBBCCBCCSCC
T ss_pred             CCCEEEEEEecCCCCCcHHHHHHHHHHHHHhhhCCeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCCceeeccccCCc
Confidence            4567788899999 88999999999999999875 8888887652        000011111 11               


Q ss_pred             --------------CCCCC-CCc---EEEEEeCCCCceecCCCCCCHHHHHHHHHHHhcC
Q 013976          221 --------------GITGE-APK---VLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEG  262 (432)
Q Consensus       221 --------------~i~~~-~~P---~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g  262 (432)
                                    ++.+. ..|   +.++++.++...+.+.|..+.+.|.+.|+..+++
T Consensus       125 ~~~~~~~~l~~~~~~~~~~~~iP~~~~~~liD~~G~i~~~~~g~~~~~~l~~~i~~lL~~  184 (187)
T 3dwv_A          125 NAHPLYEYMKKTKPGILATKAIKWNFTSFLIDRDGVPVERFSPGASVKDIEEKLIPLLGS  184 (187)
T ss_dssp             -CCHHHHHHHHHSCCSBSSSSCCSTTCEEEECTTSCEEEEECTTCCHHHHHHHHHHHC--
T ss_pred             chhHHHHHHHhhcCCccCCCccccceeEEEECCCCCEEEEECCCCCHHHHHHHHHHHHhc
Confidence                          11111 235   7778877666667778889999999999998864

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=97.13  E-value=0.0012  Score=55.93  Aligned_cols=95  Identities=11%  Similarity=0.156  Sum_probs=69.8

Q ss_pred             CCcceEEEE-EeC-cchhhhHHHHHHHHHhccC-ceEEEEEecCCcc----------------------cccchhhhhCC
Q 013976          168 PIKNQLLLF-AVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNED----------------------VGKPVSEYFGI  222 (432)
Q Consensus       168 ~~~~~i~~~-~~~-~~~~~~~~~~~~~a~~~~~-~i~f~~vd~~~~~----------------------~~~~l~~~~~i  222 (432)
                      +++++|.|| +.| +.|....+.+.+++.+|.+ .+.|+.|..+..+                      ....+.+.||+
T Consensus        45 gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  124 (195)
T 2bmx_A           45 GKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAGV  124 (195)
T ss_dssp             TCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHTC
T ss_pred             CCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhccccCCceeEEeCCchHHHHHhCC
Confidence            456778888 889 9999999999999999986 4888888776310                      03456788998


Q ss_pred             C-----CCCCcEEEEEeCCCCceecCCCC----CCHHHHHHHHHHHhcCCc
Q 013976          223 T-----GEAPKVLAYTGNDDAKKHILDGE----LTLDKIKTFGEDFLEGKL  264 (432)
Q Consensus       223 ~-----~~~~P~i~i~~~~~~~~y~~~~~----~~~~~i~~fi~~~~~g~l  264 (432)
                      .     ..  |++++++.+....+.+.|.    .+.+.|.+.++.+..|..
T Consensus       125 ~~~~g~~~--P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~~~~~  173 (195)
T 2bmx_A          125 LNADGVAD--RVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLDALQSDEL  173 (195)
T ss_dssp             BCTTSSBC--EEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHHC---
T ss_pred             cccCCCcc--ceEEEEcCCCeEEEEEecCCCCCCCHHHHHHHHHHHhhCCC
Confidence            7     54  9998887665445554443    378999999999887544

>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}

Probab=97.13  E-value=0.0027  Score=52.44  Aligned_cols=45  Identities=13%  Similarity=0.189  Sum_probs=36.3

Q ss_pred             CCCcEEEEEeCCCCh-hhhhhHHHHHHHHHHhcCC-CCEEEEEEeCC
Q 013976          296 ESKDVLLEIYAPWCG-HCQAFEPTYNKLAKHLRGV-DSIVIAKMDGT  340 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~-~c~~~~~~~~~la~~~~~~-~~~~~~~id~~  340 (432)
                      .++.+||.||.+||. .|....+.+.++.+.++.. .++.++.|.++
T Consensus        31 ~Gk~vll~F~~t~Cp~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvD   77 (170)
T 4hde_A           31 KGKVWVADFMFTNCQTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVD   77 (170)
T ss_dssp             TTSCEEEEEECTTCSSSHHHHHHHHHHHHHHHHHTTCCCEEEEEESC
T ss_pred             CCCEEEEEEECCCCCCcccHHHHHHHHHHHhhhcccccceeEeeecC
Confidence            468999999999995 7999999999988888642 35777777665

>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}

Probab=97.10  E-value=0.00036  Score=51.08  Aligned_cols=54  Identities=17%  Similarity=0.328  Sum_probs=40.3

Q ss_pred             EEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--c----cCCCCCCceEEEEeCCCc
Q 013976          300 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--H----RAKSDGFPTILFFPAGNK  363 (432)
Q Consensus       300 ~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~----~~~i~~~P~i~~~~~g~~  363 (432)
                      .+++|+++||++|+.+.+.+.+.        ++.+..+|++.+..  .    .+++.++|++  |.+|..
T Consensus         7 ~v~ly~~~~C~~C~~~~~~L~~~--------~i~~~~~di~~~~~~~~~l~~~~~~~~vP~l--~~~g~~   66 (92)
T 2khp_A            7 DVIIYTRPGCPYCARAKALLARK--------GAEFNEIDASATPELRAEMQERSGRNTFPQI--FIGSVH   66 (92)
T ss_dssp             CEEEEECTTCHHHHHHHHHHHHT--------TCCCEEEESTTSHHHHHHHHHHHTSSCCCEE--EETTEE
T ss_pred             cEEEEECCCChhHHHHHHHHHHc--------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEE
Confidence            47789999999999998888775        36677788876543  2    4688899975  446643

>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A

Probab=97.07  E-value=0.0013  Score=53.97  Aligned_cols=95  Identities=12%  Similarity=0.048  Sum_probs=67.6

Q ss_pred             CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCc-eEEEEEecCC--------cccccchhh-hh---------------
Q 013976          167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDN--------EDVGKPVSE-YF---------------  220 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~-i~f~~vd~~~--------~~~~~~l~~-~~---------------  220 (432)
                      .++++++.|+++| +.|....+.+.+++.+|.++ +.++.|+++.        .+....+++ .+               
T Consensus        31 ~gk~vll~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  110 (170)
T 2p5q_A           31 KGKVLLIVNVASKCGMTNSNYAEMNQLYEKYKDQGLEILAFPCNQFGEEEPGTNDQITDFVCTRFKSEFPIFDKIDVNGE  110 (170)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHHHHHTCCCSCBBCCCBSSST
T ss_pred             CCCEEEEEEEeccCCccHHHHHHHHHHHHHhccCCEEEEEEECCCCCCCCCCCHHHHHHHHHHhcCCCceeEeeeccCCC
Confidence            4567788899999 99999999999999999875 8899888752        000122223 32               


Q ss_pred             --------------CCCCCCCc---EEEEEeCCCCceecCCCCCCHHHHHHHHHHHhc
Q 013976          221 --------------GITGEAPK---VLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  261 (432)
Q Consensus       221 --------------~i~~~~~P---~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  261 (432)
                                    |+.....|   +.++++.++...+.+.|..+.+.|.+.|+..++
T Consensus       111 ~~~~~~~~l~~~~~~~~~~~~p~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~  168 (170)
T 2p5q_A          111 NASPLYRFLKLGKWGIFGDDIQWNFAKFLVNKDGQVVDRYYPTTSPLSLERDIKQLLE  168 (170)
T ss_dssp             TBCHHHHHHHTHHHHTTCSCCCSTTCEEEECTTSCEEEEECTTSCGGGGHHHHHHHTT
T ss_pred             chHHHHHHHHhcCCCccCCcccccccEEEECCCCCEEEeeCCCCCHHHHHHHHHHHhh
Confidence                          22112246   777777666566677888899999999998775

>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}

Probab=97.04  E-value=0.00033  Score=52.79  Aligned_cols=53  Identities=13%  Similarity=0.276  Sum_probs=39.3

Q ss_pred             EEEEeC-----CCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc------ccCCCCCCceEEEEeCCCc
Q 013976          301 LLEIYA-----PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------HRAKSDGFPTILFFPAGNK  363 (432)
Q Consensus       301 lv~f~~-----~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~------~~~~i~~~P~i~~~~~g~~  363 (432)
                      +++|++     +||++|+.+.+.|.++        ++.+..+|++.++.      ...+..++|++  |.+|..
T Consensus        19 vvvf~~g~~~~~~C~~C~~~~~~L~~~--------~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~v--~i~g~~   82 (105)
T 2yan_A           19 VMLFMKGNKQEAKCGFSKQILEILNST--------GVEYETFDILEDEEVRQGLKAYSNWPTYPQL--YVKGEL   82 (105)
T ss_dssp             EEEEESBCSSSBCTTHHHHHHHHHHHH--------TCCCEEEEGGGCHHHHHHHHHHHTCCSSCEE--EETTEE
T ss_pred             EEEEEecCCCCCCCccHHHHHHHHHHC--------CCCeEEEECCCCHHHHHHHHHHHCCCCCCeE--EECCEE
Confidence            444777     9999999999999887        36677888877644      12578899998  446643

>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*

Probab=97.04  E-value=9.4e-05  Score=56.71  Aligned_cols=53  Identities=13%  Similarity=0.395  Sum_probs=37.6

Q ss_pred             EEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCc----cc------ccCCCCCCceEEEEeCCCc
Q 013976          301 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN----EH------HRAKSDGFPTILFFPAGNK  363 (432)
Q Consensus       301 lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~----~~------~~~~i~~~P~i~~~~~g~~  363 (432)
                      +++|+++||++|+.+.+.|.++        ++.+..+|++..    ..      ...+..++|++  |.+|+.
T Consensus        21 v~vy~~~~Cp~C~~~~~~L~~~--------~i~~~~~di~~~~~~~~~~~~~l~~~~g~~tvP~i--fi~g~~   83 (113)
T 3rhb_A           21 VVIYSKTWCSYCTEVKTLFKRL--------GVQPLVVELDQLGPQGPQLQKVLERLTGQHTVPNV--FVCGKH   83 (113)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT--------TCCCEEEEGGGSTTHHHHHHHHHHHHHSCCSSCEE--EETTEE
T ss_pred             EEEEECCCChhHHHHHHHHHHc--------CCCCeEEEeecCCCChHHHHHHHHHHhCCCCcCEE--EECCEE
Confidence            7779999999999999988875        344455666552    11      12478899998  556654

>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A

Probab=97.00  E-value=0.00079  Score=56.96  Aligned_cols=44  Identities=25%  Similarity=0.479  Sum_probs=38.9

Q ss_pred             CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCC
Q 013976          296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT  341 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~  341 (432)
                      +.+.+||.|++.||++|..+.|.+.++.+.+.+  ++.|..+++.-
T Consensus        23 ~~~v~vv~f~d~~Cp~C~~~~~~l~~~~~~~~~--~v~~~~~p~~~   66 (193)
T 3hz8_A           23 AGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKD--DMYLRTEHVVW   66 (193)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHTTCCT--TEEEEEEECCC
T ss_pred             CCCcEEEEEECCCChhHHHHHHHHHHHHHHCCC--CeEEEEecCCC
Confidence            357799999999999999999999999988877  69999998763

>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=96.99  E-value=0.00082  Score=57.77  Aligned_cols=87  Identities=8%  Similarity=0.064  Sum_probs=63.0

Q ss_pred             CCcEEEEEe-CCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc------------------------------c
Q 013976          297 SKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------------------------------H  345 (432)
Q Consensus       297 ~~~~lv~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~------------------------------~  345 (432)
                      ++++||+|| ++||.+|....+.|.++...|+.. ++.++.|+++....                              .
T Consensus        48 Gk~vvl~F~pat~C~~C~~e~~~l~~l~~~~~~~-~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~  126 (211)
T 2pn8_A           48 GKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSI-NTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISK  126 (211)
T ss_dssp             TSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTT-TEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTSHHHH
T ss_pred             CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHHHhhhccCccCCceEEEECCchHHHH
Confidence            578999999 999999999999999999999763 68888887764210                              1


Q ss_pred             cCCCC------CCceEEEEe-CCCcccCceeccC----CCCHHHHHHHHHhcC
Q 013976          346 RAKSD------GFPTILFFP-AGNKSFDPINVDV----DRTVVALYKFLKKNA  387 (432)
Q Consensus       346 ~~~i~------~~P~i~~~~-~g~~~~~~~~y~g----~~~~~~l~~fi~~~~  387 (432)
                      .|++.      ..|+.+++. +|..+.   .+.|    ..+.+.+++.|+...
T Consensus       127 ~ygv~~~~~g~~~p~~~lID~~G~I~~---~~~g~~~~~~~~~ell~~l~~l~  176 (211)
T 2pn8_A          127 DYGVYLEDSGHTLRGLFIIDDKGILRQ---ITLNDLPVGRSVDETLRLVQAFQ  176 (211)
T ss_dssp             HTTCEETTTTEECEEEEEECTTSBEEE---EEEECTTBCCCHHHHHHHHHHHH
T ss_pred             HcCCcccCCCcccceEEEECCCCEEEE---EEecCCCCCCCHHHHHHHHHHhh
Confidence            23452      589999994 554432   2222    357888888888754

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=96.99  E-value=0.0017  Score=51.73  Aligned_cols=87  Identities=10%  Similarity=0.108  Sum_probs=62.9

Q ss_pred             CCCcceEEEEEeC-cchhhhHHHHHHHHHhccC-ceEEEEEecCCcc-------------c----------ccchhhhhC
Q 013976          167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNED-------------V----------GKPVSEYFG  221 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~-~i~f~~vd~~~~~-------------~----------~~~l~~~~~  221 (432)
                      .++++++.||++| +.|....+.+.+++++|.+ .+.|+.|+.+...             +          ...+.+.||
T Consensus        31 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  110 (143)
T 4fo5_A           31 LGRYTLLNFWAAYDAESRARNVQLANEVNKFGPDKIAMCSISMDEKESIFTETVKIDKLDLSTQFHEGLGKESELYKKYD  110 (143)
T ss_dssp             SCCEEEEEEECTTCHHHHHHHHHHHHHHTTSCTTTEEEEEEECCSCHHHHHHHHHHHTCCGGGEEECTTGGGSHHHHHTT
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCcCCEEEEEEEccCCHHHHHHHHHHhCCCCceeeecccccchHHHHHcC
Confidence            4557788899999 8899999999999999985 4888888776421             0          134667888


Q ss_pred             CCCCCCcEEEEEeCCCCceecCCCCCCHHHHHHHHHH
Q 013976          222 ITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGED  258 (432)
Q Consensus       222 i~~~~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~  258 (432)
                      +...  |+.++++.++...+.   ..+.+.+.+++++
T Consensus       111 v~~~--P~~~lid~~G~i~~~---~~~~~~l~~~l~~  142 (143)
T 4fo5_A          111 LRKG--FKNFLINDEGVIIAA---NVTPEKLTEILKA  142 (143)
T ss_dssp             GGGC--CCEEEECTTSBEEEE---SCCHHHHHHHHTC
T ss_pred             CCCC--CcEEEECCCCEEEEc---cCCHHHHHHHHHh
Confidence            8877  988888755433333   2467778777754

>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}

Probab=96.99  E-value=0.00077  Score=55.55  Aligned_cols=45  Identities=20%  Similarity=0.234  Sum_probs=36.0

Q ss_pred             CCCcEEEEEe-CCCChhhhh-hHHHHHHHHHHhcCCCCE-EEEEEeCCC
Q 013976          296 ESKDVLLEIY-APWCGHCQA-FEPTYNKLAKHLRGVDSI-VIAKMDGTT  341 (432)
Q Consensus       296 ~~~~~lv~f~-~~~c~~c~~-~~~~~~~la~~~~~~~~~-~~~~id~~~  341 (432)
                      .++.++|+|| +.||+.|.. ..|.|.++...+++. ++ .++.|+.+.
T Consensus        30 ~Gk~vvl~f~~a~wcp~C~~~e~p~l~~~~~~~~~~-gv~~vv~Is~d~   77 (167)
T 2wfc_A           30 AGKKGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHGK-GVDIIACMAVND   77 (167)
T ss_dssp             TTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHHT-TCCEEEEEESSC
T ss_pred             CCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHC-CCCEEEEEeCCC
Confidence            3567777775 999999999 899999999998753 67 788887654

>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10

Probab=96.98  E-value=0.00075  Score=55.29  Aligned_cols=45  Identities=18%  Similarity=0.259  Sum_probs=36.2

Q ss_pred             CCCcEEEEEe-CCCChhhh-hhHHHHHHHHHHhcCCCCEE-EEEEeCCC
Q 013976          296 ESKDVLLEIY-APWCGHCQ-AFEPTYNKLAKHLRGVDSIV-IAKMDGTT  341 (432)
Q Consensus       296 ~~~~~lv~f~-~~~c~~c~-~~~~~~~~la~~~~~~~~~~-~~~id~~~  341 (432)
                      .++.++|+|| +.||..|. ...|.|.++...+++. ++. ++.|+.+.
T Consensus        34 ~gk~vvl~f~~~~~c~~C~~~e~~~l~~~~~~~~~~-~v~~vv~Is~d~   81 (162)
T 1tp9_A           34 AGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSK-GVTEILCISVND   81 (162)
T ss_dssp             TTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHT-TCCCEEEEESSC
T ss_pred             CCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHC-CCCEEEEEECCC
Confidence            4578999999 89999999 8999999999998743 566 66666553

>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}

Probab=96.96  E-value=0.00069  Score=56.00  Aligned_cols=42  Identities=5%  Similarity=0.048  Sum_probs=35.4

Q ss_pred             CCcEEEEEe-CCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCC
Q 013976          297 SKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT  341 (432)
Q Consensus       297 ~~~~lv~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~  341 (432)
                      +++++|.|| +.||..|....+.+.++...+ .  ++.++.|.++.
T Consensus        47 gk~vvl~f~~~~~C~~C~~~~~~l~~~~~~~-~--~v~vv~Is~d~   89 (171)
T 2yzh_A           47 DVVQVIITVPSLDTPVCETETKKFNEIMAGM-E--GVDVTVVSMDL   89 (171)
T ss_dssp             SSEEEEEECSCTTSHHHHHHHHHHHHHTTTC-T--TEEEEEEESSC
T ss_pred             CCeEEEEEECCCCCCchHHHHHHHHHHHHHc-C--CceEEEEeCCC
Confidence            578999998 899999999999999998888 3  67888877654

>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}

Probab=96.95  E-value=0.00038  Score=57.67  Aligned_cols=43  Identities=14%  Similarity=0.305  Sum_probs=35.1

Q ss_pred             CcEEEEEeCCCChhhhhh-HHHHHHHHHHhcCCCCEE-EEEEeCCC
Q 013976          298 KDVLLEIYAPWCGHCQAF-EPTYNKLAKHLRGVDSIV-IAKMDGTT  341 (432)
Q Consensus       298 ~~~lv~f~~~~c~~c~~~-~~~~~~la~~~~~~~~~~-~~~id~~~  341 (432)
                      +.+|++||+.||.+|..- .|.|.++...++.. ++. ++-|+.+.
T Consensus        45 ~vvl~~~~a~wcp~C~~eh~p~l~~~~~~~~~~-g~~~vv~Is~d~   89 (171)
T 2pwj_A           45 KVVIFGLPGAYTGVCSSKHVPPYKHNIDKFKAK-GVDSVICVAIND   89 (171)
T ss_dssp             EEEEEECSCTTCTTHHHHTHHHHHHTHHHHHHT-TCSEEEEEESSC
T ss_pred             CEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHC-CCCEEEEEeCCC
Confidence            467788999999999997 99999999998753 566 77777654

>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A

Probab=96.95  E-value=0.0038  Score=51.08  Aligned_cols=96  Identities=13%  Similarity=0.015  Sum_probs=67.3

Q ss_pred             CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCc-eEEEEEecCCc--------ccccch-hhhh---------------
Q 013976          167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNE--------DVGKPV-SEYF---------------  220 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~-i~f~~vd~~~~--------~~~~~l-~~~~---------------  220 (432)
                      .++.+++.|+++| +.|....+.+.+++.+|.++ +.++.|+++..        +....+ .+.+               
T Consensus        30 ~gk~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  109 (169)
T 2v1m_A           30 RGHVCLIVNVACKCGATDKNYRQLQEMHTRLVGKGLRILAFPCNQFGGQEPWAEAEIKKFVTEKYGVQFDMFSKIKVNGS  109 (169)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSEEBCCCCCSST
T ss_pred             CCCEEEEEEeeccCCchHHHHHHHHHHHHHhhcCCeEEEEEECCccCCCCCCCHHHHHHHHHHhcCCCCceEEEEeecCc
Confidence            4567788899999 99999999999999999874 88888887531        001122 1222               


Q ss_pred             --------------CCCCC---CCcEEEEEeCCCCceecCCCCCCHHHHHHHHHHHhcC
Q 013976          221 --------------GITGE---APKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEG  262 (432)
Q Consensus       221 --------------~i~~~---~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g  262 (432)
                                    |+.+.   ..|+.++++.++...+.+.|..+.+.|.+.|+..+.+
T Consensus       110 ~~~~~~~~l~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~~  168 (169)
T 2v1m_A          110 DADDLYKFLKSRQHGTLTNNIKWNFSKFLVDRQGQPVKRYSPTTAPYDIEGDIMELLEK  168 (169)
T ss_dssp             TSCHHHHHHHHHSCCSSSCSCCSTTCEEEECTTSCEEEEECTTSCGGGGHHHHHHHHHC
T ss_pred             cccHHHHHHHhhcCCccCCcccccceEEEECCCCCEEEEcCCCCCHHHHHHHHHHHhcc
Confidence                          22211   1267777776666666778888899999999988764

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=96.90  E-value=0.0011  Score=58.34  Aligned_cols=45  Identities=20%  Similarity=0.361  Sum_probs=37.6

Q ss_pred             CCCcEEEEEe-CCCChhhh-hhHHHHHHHHHHhcCCCCE-EEEEEeCCC
Q 013976          296 ESKDVLLEIY-APWCGHCQ-AFEPTYNKLAKHLRGVDSI-VIAKMDGTT  341 (432)
Q Consensus       296 ~~~~~lv~f~-~~~c~~c~-~~~~~~~~la~~~~~~~~~-~~~~id~~~  341 (432)
                      .++.++|+|| +.||.+|. ...|.|.+++..+++. ++ .++.|+.+.
T Consensus        32 ~gk~vvl~f~~a~~cp~C~~~e~~~l~~~~~~~~~~-~~~~vv~is~d~   79 (241)
T 1nm3_A           32 DNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKY-GVDDILVVSVND   79 (241)
T ss_dssp             TTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHT-TCCEEEEEESSC
T ss_pred             CCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHC-CCCEEEEEEcCC
Confidence            4578899998 99999999 8999999999999753 67 777777654

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}

Probab=95.95  E-value=0.00015  Score=59.26  Aligned_cols=97  Identities=8%  Similarity=-0.000  Sum_probs=63.5

Q ss_pred             CCCcceEEEEEeC-cchhhhHHHHHH-HHHhcc--CceEEEEEecCCcc-cccchhh------------------hhCCC
Q 013976          167 SPIKNQLLLFAVS-NDSEKLLPVFEE-AAKSFK--GKLIFVYVQMDNED-VGKPVSE------------------YFGIT  223 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~~~~~~~~~~~-~a~~~~--~~i~f~~vd~~~~~-~~~~l~~------------------~~~i~  223 (432)
                      .++++++.|+++| +.|....+.+.+ ++.++.  ..+.++.|+++... ....+++                  .||+.
T Consensus        32 ~gk~vll~f~a~~C~~C~~~~~~l~~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  111 (159)
T 2ls5_A           32 RGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNADFALIGIDRDEPLEKVLAFAKSTGVTYPLGLDPGADIFAKYALR  111 (159)
Confidence            3557788899999 899999999998 888887  45888888776531 1122222                  23322


Q ss_pred             CCCCcEEEEEeCCCCceecCCCCCCHHHHHHHHHHHhcCCc
Q 013976          224 GEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKL  264 (432)
Q Consensus       224 ~~~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g~l  264 (432)
                      ....|++++++.++...+.+.| .+.+.+.++++.+..+.-
T Consensus       112 ~~~~P~~~lid~~G~i~~~~~g-~~~~~l~~~l~~l~~~~~  151 (159)
T 2ls5_A          112 DAGITRNVLIDREGKIVKLTRL-YNEEEFASLVQQINEMLK  151 (159)
Confidence            2224888888665544444555 567778888877665443

>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}

Probab=96.90  E-value=0.0015  Score=53.82  Aligned_cols=92  Identities=11%  Similarity=0.115  Sum_probs=66.2

Q ss_pred             CCCcceEEEEEeC-cc-hhhhHHHHHHHHHhccC----ceEEEEEecCCcccc-------------------------cc
Q 013976          167 SPIKNQLLLFAVS-ND-SEKLLPVFEEAAKSFKG----KLIFVYVQMDNEDVG-------------------------KP  215 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~-~~~~~~~~~~~a~~~~~----~i~f~~vd~~~~~~~-------------------------~~  215 (432)
                      .++++++.|++.| ++ |....+.+.+++.++.+    .+.|+.|+++.....                         ..
T Consensus        34 ~gk~vll~f~~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~d~~~~~~~  113 (172)
T 2k6v_A           34 QDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPERDPPEVADRYAKAFHPSFLGLSGSPEAVRE  113 (172)
T ss_dssp             TTSEEEEEEECTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCTTTCCHHHHHHHHHHHCTTEEEECCCHHHHHH
T ss_pred             CCCEEEEEEECCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEECCCCCCHHHHHHHHHHhCCCcEEEeCCHHHHHH
Confidence            3557788888999 76 99999999999999984    589999987642101                         24


Q ss_pred             hhhhhCCCC-------------CCCcEEEEEeCCCCceecCCCCC--CHHHHHHHHHHH
Q 013976          216 VSEYFGITG-------------EAPKVLAYTGNDDAKKHILDGEL--TLDKIKTFGEDF  259 (432)
Q Consensus       216 l~~~~~i~~-------------~~~P~i~i~~~~~~~~y~~~~~~--~~~~i~~fi~~~  259 (432)
                      +++.||+..             ...|++++++ +....+.+.|..  +.+.|.+.|+.+
T Consensus       114 ~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid-~G~i~~~~~g~~~~~~~~l~~~l~~l  171 (172)
T 2k6v_A          114 AAQTFGVFYQKSQYRGPGEYLVDHTATTFVVK-EGRLVLLYSPDKAEATDRVVADLQAL  171 (172)
T ss_dssp             HHHHHTCCEEEEEEEETTEEEEEECCCEEEEE-TTEEEEEECHHHHTCHHHHHHHHHHC
T ss_pred             HHHhcCeEEEeccCCCCCCceEecCCEEEEEE-CCEEEEEECCCCCCCHHHHHHHHHHh
Confidence            556666521             1348888888 654556667766  888999888764

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=96.89  E-value=0.0027  Score=51.73  Aligned_cols=92  Identities=13%  Similarity=0.227  Sum_probs=64.2

Q ss_pred             CCc-ceEEEE-EeC-cchhhhHHHHHHHHHhccCc-eEEEEEecCCcc------------------cccchhhhhCCCC-
Q 013976          168 PIK-NQLLLF-AVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNED------------------VGKPVSEYFGITG-  224 (432)
Q Consensus       168 ~~~-~~i~~~-~~~-~~~~~~~~~~~~~a~~~~~~-i~f~~vd~~~~~------------------~~~~l~~~~~i~~-  224 (432)
                      ++. .++.|| +.| +.|....+.+.+++.+|+++ +.|+.|..+..+                  ....+.+.||+.+ 
T Consensus        28 gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  107 (161)
T 3drn_A           28 GKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDYDVVVIGVSSDDINSHKRFKEKYKLPFILVSDPDKKIRELYGAKGF  107 (161)
T ss_dssp             TTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHTTCEEEEEEESCCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCCCS
T ss_pred             CCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHcCCCCc
Confidence            444 677788 888 89999999999999999864 888888776210                  1357788899986 


Q ss_pred             -CCCcEEEEEeCCCCceecCCCCC----CHHHHHHHHHHH
Q 013976          225 -EAPKVLAYTGNDDAKKHILDGEL----TLDKIKTFGEDF  259 (432)
Q Consensus       225 -~~~P~i~i~~~~~~~~y~~~~~~----~~~~i~~fi~~~  259 (432)
                       ...|+.++++.++...+.+.|..    +.+.+.+.++..
T Consensus       108 ~~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~il~~l~~l  147 (161)
T 3drn_A          108 ILPARITFVIDKKGIIRHIYNSQMNPANHVNEALKALKQI  147 (161)
T ss_dssp             SSCCCEEEEECTTSBEEEEEECSSCTTHHHHHHHHHHHHH
T ss_pred             CcccceEEEECCCCEEEEEEecCCCCCcCHHHHHHHHHHh
Confidence             12498888877665555555522    344555555554

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=96.83  E-value=0.0013  Score=49.04  Aligned_cols=79  Identities=10%  Similarity=0.037  Sum_probs=57.4

Q ss_pred             cceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCceecCCCCCC
Q 013976          170 KNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELT  248 (432)
Q Consensus       170 ~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~~~  248 (432)
                      +.+++|+++| +.|+.+.+.+.+++..    +.|..+|.++.+ .+.+...+| ...  |+++ . ++  +.. ..+.++
T Consensus        17 ~~v~~f~~~~C~~C~~~~~~L~~l~~~----i~~~~vdi~~~~-~~el~~~~g-~~v--P~l~-~-~g--~~~-~~~g~~   83 (100)
T 1wjk_A           17 PVLTLFTKAPCPLCDEAKEVLQPYKDR----FILQEVDITLPE-NSTWYERYK-FDI--PVFH-L-NG--QFL-MMHRVN   83 (100)
T ss_dssp             CEEEEEECSSCHHHHHHHHHTSTTSSS----SEEEEEETTSST-THHHHHHSS-SSC--SEEE-E-SS--SEE-EESSCC
T ss_pred             CEEEEEeCCCCcchHHHHHHHHHhhhC----CeEEEEECCCcc-hHHHHHHHC-CCC--CEEE-E-CC--EEE-EecCCC
Confidence            4567777888 8999999888876543    899999998322 568888999 665  9874 3 22  222 235589


Q ss_pred             HHHHHHHHHHHhc
Q 013976          249 LDKIKTFGEDFLE  261 (432)
Q Consensus       249 ~~~i~~fi~~~~~  261 (432)
                      .+.|.++++.++.
T Consensus        84 ~~~l~~~l~~~~~   96 (100)
T 1wjk_A           84 TSKLEKQLRKLSG   96 (100)
T ss_dssp             HHHHHHHHHSSSC
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999987653

>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A

Probab=96.82  E-value=0.0013  Score=55.98  Aligned_cols=43  Identities=26%  Similarity=0.367  Sum_probs=36.6

Q ss_pred             CCCcEEEEEe-CCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCC
Q 013976          296 ESKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT  341 (432)
Q Consensus       296 ~~~~~lv~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~  341 (432)
                      .++.++|.|| +.||..|....+.+.++...+ .  ++.++.|.++.
T Consensus        77 ~Gk~vvl~F~~~~~c~~C~~e~~~l~~l~~~~-~--~v~vv~Is~D~  120 (200)
T 3zrd_A           77 AGKRKVLNIFPSIDTGVCAASVRKFNQLAGEL-E--NTVVLCISSDL  120 (200)
T ss_dssp             TTSEEEEEECSCCCCSCCCHHHHHHHHHHHTS-T--TEEEEEEESSC
T ss_pred             CCCcEEEEEECCCCCchhHHHHHHHHHHHHHh-C--CCEEEEEECCC
Confidence            3578899998 789999999999999999998 3  68888888764

>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A

Probab=96.77  E-value=0.0016  Score=54.67  Aligned_cols=88  Identities=8%  Similarity=-0.021  Sum_probs=62.6

Q ss_pred             CCcEEEEEeC-CCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc---------------------------ccCC
Q 013976          297 SKDVLLEIYA-PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH---------------------------HRAK  348 (432)
Q Consensus       297 ~~~~lv~f~~-~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~---------------------------~~~~  348 (432)
                      ++++||+||+ .||..|....|.|.++...|++. ++.++.|.++....                           ..|+
T Consensus        30 Gk~vvl~F~~~~~Cp~C~~e~~~l~~~~~~~~~~-~v~vv~Is~d~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~yg  108 (186)
T 1n8j_A           30 GRWSVFFFYPADFTFVSPTELGDVADHYEELQKL-GVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD  108 (186)
T ss_dssp             TSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHT-TEEEEEEESSCHHHHHHHHHHCTTGGGCCSEEEECTTSHHHHHTT
T ss_pred             CCeEEEEEECCCCCCccHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHHHcCcccCCceeEEECCchHHHHHhC
Confidence            5789999995 99999999999999999999753 68888887663211                           1234


Q ss_pred             CC------CCceEEEEe-CCCcccCceeccC----CCCHHHHHHHHHhcCC
Q 013976          349 SD------GFPTILFFP-AGNKSFDPINVDV----DRTVVALYKFLKKNAS  388 (432)
Q Consensus       349 i~------~~P~i~~~~-~g~~~~~~~~y~g----~~~~~~l~~fi~~~~~  388 (432)
                      +.      ..|+.+++. +|..+.   .+.|    ..+.+.|.+.|+....
T Consensus       109 v~~~~~g~~~p~~~lID~~G~i~~---~~~~~~~~~~~~~~l~~~l~~l~~  156 (186)
T 1n8j_A          109 NMREDEGLADRATFVVDPQGIIQA---IEVTAEGIGRDASDLLRKIKAAQY  156 (186)
T ss_dssp             CEETTTTEECEEEEEECTTSBEEE---EEEECTTBCCCHHHHHHHHHHHHH
T ss_pred             CccCCCCceeeEEEEECCCCeEEE---EEecCCCCCCCHHHHHHHHHHHHH
Confidence            43      369999994 554432   3333    2368888888887653

>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*

Probab=96.72  E-value=0.0022  Score=46.24  Aligned_cols=72  Identities=10%  Similarity=0.041  Sum_probs=46.5

Q ss_pred             EEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCcc-----c-ccCCC-----CCCceEEEEeCCCcccCce
Q 013976          300 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE-----H-HRAKS-----DGFPTILFFPAGNKSFDPI  368 (432)
Q Consensus       300 ~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~-----~-~~~~i-----~~~P~i~~~~~g~~~~~~~  368 (432)
                      .+++|+++||++|+.+...+.++.    -  .+.+..+|...+.     . ...+.     .++|++.+  +|..+    
T Consensus         5 ~v~ly~~~~Cp~C~~~~~~L~~~~----i--~~~~~~vd~~~~~~~~~el~~~~g~~~~~~~~vP~i~i--~g~~i----   72 (89)
T 3msz_A            5 KVKIYTRNGCPYCVWAKQWFEENN----I--AFDETIIDDYAQRSKFYDEMNQSGKVIFPISTVPQIFI--DDEHI----   72 (89)
T ss_dssp             CEEEEECTTCHHHHHHHHHHHHTT----C--CCEEEECCSHHHHHHHHHHHHTTTCCSSCCCSSCEEEE--TTEEE----
T ss_pred             EEEEEEcCCChhHHHHHHHHHHcC----C--CceEEEeecCCChhHHHHHHHHhCCCCCCCCccCEEEE--CCEEE----
Confidence            478899999999999988887652    1  3455555554431     1 23455     89999854  55332    


Q ss_pred             eccCCCCHHHHHHHHHhcCC
Q 013976          369 NVDVDRTVVALYKFLKKNAS  388 (432)
Q Consensus       369 ~y~g~~~~~~l~~fi~~~~~  388 (432)
                         |  ....+.+++++...
T Consensus        73 ---~--g~~~i~~~~~~~~~   87 (89)
T 3msz_A           73 ---G--GFTELKANADKILN   87 (89)
T ss_dssp             ---E--SHHHHHHTHHHHTT
T ss_pred             ---e--ChHHHHHHHHHHhc
Confidence               2  45667777766543

>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=96.70  E-value=0.0026  Score=53.05  Aligned_cols=94  Identities=4%  Similarity=0.066  Sum_probs=64.9

Q ss_pred             CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCc-eEEEEEecCCc--------ccccchhhh-hCCC----------C-
Q 013976          167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNE--------DVGKPVSEY-FGIT----------G-  224 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~-i~f~~vd~~~~--------~~~~~l~~~-~~i~----------~-  224 (432)
                      .++.+++.|+++| +.|....+.+.+++++|.++ +.++.|+++..        +....+++. +++.          + 
T Consensus        48 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~~p~~~~~d~~g~  127 (181)
T 2p31_A           48 RGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGT  127 (181)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCCCSST
T ss_pred             CCCEEEEEEeccCCCCcHHHHHHHHHHHHHhhcCCEEEEEEECcCCCCCCCCCHHHHHHHHHhhcCCCceeEeecccCCc
Confidence            4557788899999 99999999999999999875 88888887531        001223333 3321          0 


Q ss_pred             ----------CCCc-------EEEEEeCCCCceecCCCCCCHHHHHHHHHHHh
Q 013976          225 ----------EAPK-------VLAYTGNDDAKKHILDGELTLDKIKTFGEDFL  260 (432)
Q Consensus       225 ----------~~~P-------~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~  260 (432)
                                ...|       +.++++.++...+.+.|..+.+.|.+.|+..+
T Consensus       128 ~~~~~~~~~~~~~P~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll  180 (181)
T 2p31_A          128 GAHPAFKYLAQTSGKEPTWNFWKYLVAPDGKVVGAWDPTVSVEEVRPQITALV  180 (181)
T ss_dssp             TSCHHHHHHHHHHSCCCCSTTCEEEECTTSCEEEEECTTSCHHHHHHHHHTTC
T ss_pred             cchhhhhhhhhcCCCccccceeEEEEcCCCCEEEEeCCCCCHHHHHHHHHHHh
Confidence                      0236       56677666555666778888999998888754

>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10

Probab=96.66  E-value=0.0016  Score=53.36  Aligned_cols=43  Identities=16%  Similarity=0.230  Sum_probs=35.9

Q ss_pred             CCCcEEEEEeC-CCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCC
Q 013976          296 ESKDVLLEIYA-PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT  341 (432)
Q Consensus       296 ~~~~~lv~f~~-~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~  341 (432)
                      .++++||.||+ .||.+|....+.+.++...+ .  ++.++.|+++.
T Consensus        41 ~gk~vvl~F~~~~~c~~C~~~~~~l~~~~~~~-~--~v~vv~is~d~   84 (163)
T 1psq_A           41 DGKKKVLSVVPSIDTGICSTQTRRFNEELAGL-D--NTVVLTVSMDL   84 (163)
T ss_dssp             TTSEEEEEECSCTTSHHHHHHHHHHHHHTTTC-T--TEEEEEEESSC
T ss_pred             CCCEEEEEEECCCCCCccHHHHHHHHHHHHHc-C--CcEEEEEECCC
Confidence            35789999995 99999999999999998888 3  68888887764

>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10

Probab=96.65  E-value=0.0025  Score=54.05  Aligned_cols=93  Identities=13%  Similarity=0.176  Sum_probs=68.0

Q ss_pred             CCCcceEEEE-EeC-cchhhhHHHHHHHHHhccC-ceEEEEEecCCcc-------------------------cccchhh
Q 013976          167 SPIKNQLLLF-AVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNED-------------------------VGKPVSE  218 (432)
Q Consensus       167 ~~~~~~i~~~-~~~-~~~~~~~~~~~~~a~~~~~-~i~f~~vd~~~~~-------------------------~~~~l~~  218 (432)
                      .++++++.|| +.| +.|....+.+.+++.+|.+ .+.++.|+.+..+                         ....+.+
T Consensus        32 ~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  111 (198)
T 1zof_A           32 GKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISR  111 (198)
T ss_dssp             CSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCCCSSCEEECTTSHHHH
T ss_pred             CCCcEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhhhhcccccCceeEEEECCchHHHH
Confidence            3556777788 888 9999999999999999975 4888888776310                         0245778


Q ss_pred             hhCCC-----CCCCcEEEEEeCCCCceecCCCC----CCHHHHHHHHHHHhc
Q 013976          219 YFGIT-----GEAPKVLAYTGNDDAKKHILDGE----LTLDKIKTFGEDFLE  261 (432)
Q Consensus       219 ~~~i~-----~~~~P~i~i~~~~~~~~y~~~~~----~~~~~i~~fi~~~~~  261 (432)
                      .||+.     ..  |+.++++.++...+.+.|.    .+.+.|.+.++....
T Consensus       112 ~~~v~~~~g~~~--P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~~  161 (198)
T 1zof_A          112 DYDVLFEEAIAL--RGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDALLH  161 (198)
T ss_dssp             HTTCEETTTEEC--EEEEEEETTTEEEEEEEESSSCCCHHHHHHHHHHHHHH
T ss_pred             HhCCcccCCccc--ceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHHHH
Confidence            88987     54  9888887765444544443    367889999988763

>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A

Probab=96.61  E-value=0.0076  Score=50.08  Aligned_cols=39  Identities=31%  Similarity=0.575  Sum_probs=32.0

Q ss_pred             CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEE
Q 013976          297 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKM  337 (432)
Q Consensus       297 ~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~i  337 (432)
                      .+++||.|..-.|++|+.+.+.+.++.+.+.+.  +.+..+
T Consensus        21 ~~~~vvEf~dy~Cp~C~~~~~~~~~l~~~~~~~--~~~~~~   59 (184)
T 4dvc_A           21 SSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEG--AKFQKN   59 (184)
T ss_dssp             SSCEEEEEECTTCHHHHHHHHHHHHHHHTSCTT--CEEEEE
T ss_pred             CCCEEEEEECCCCHhHHHHhHHHHHHHhhcCCc--eEEEEE
Confidence            467899999999999999999999999888763  444443

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10

Probab=96.60  E-value=0.0032  Score=52.72  Aligned_cols=95  Identities=11%  Similarity=-0.039  Sum_probs=69.2

Q ss_pred             CCCcceEEEE-EeC-cchhhhHHHHHHHHHhccC-ceEEEEEecCCcc----------------------cccchhhhhC
Q 013976          167 SPIKNQLLLF-AVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNED----------------------VGKPVSEYFG  221 (432)
Q Consensus       167 ~~~~~~i~~~-~~~-~~~~~~~~~~~~~a~~~~~-~i~f~~vd~~~~~----------------------~~~~l~~~~~  221 (432)
                      .+++.++.|| +.| +.|....+.+.+++.+|.+ .+.++.|..+...                      ....+.+.||
T Consensus        30 ~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  109 (187)
T 1we0_A           30 KGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTISRQFD  109 (187)
T ss_dssp             SSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHSCHHHHTCCSEEEECTTCHHHHHTT
T ss_pred             CCCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHHhccccCCCceEEECCchHHHHHhC
Confidence            3456777788 899 9999999999999999985 4888888776410                      0345778889


Q ss_pred             CCC----CCCcEEEEEeCCCCceecCCCC----CCHHHHHHHHHHHhc
Q 013976          222 ITG----EAPKVLAYTGNDDAKKHILDGE----LTLDKIKTFGEDFLE  261 (432)
Q Consensus       222 i~~----~~~P~i~i~~~~~~~~y~~~~~----~~~~~i~~fi~~~~~  261 (432)
                      +..    ...|++++++.++...+.+.|.    .+.+.|.+.++.+..
T Consensus       110 v~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~~  157 (187)
T 1we0_A          110 VLNEETGLADRGTFIIDPDGVIQAIEINADGIGRDASTLINKVKAAQY  157 (187)
T ss_dssp             CEETTTTEECEEEEEECTTSBEEEEEEECTTSCCCTTHHHHHHHHHHH
T ss_pred             CCcCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHhh
Confidence            871    1349999997665445544443    378899999998775

>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=96.60  E-value=0.0018  Score=48.98  Aligned_cols=64  Identities=11%  Similarity=0.275  Sum_probs=43.6

Q ss_pred             ccchhhhhcCCCcEEEEEeC-----CCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--c----cCCCCCCceE
Q 013976          287 NNFDEIVLDESKDVLLEIYA-----PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--H----RAKSDGFPTI  355 (432)
Q Consensus       287 ~~~~~~~~~~~~~~lv~f~~-----~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~----~~~i~~~P~i  355 (432)
                      +.+++.+ . ... +++|+.     +||++|+.+...|.++        ++.+..+|++.++.  .    ..+..++|.|
T Consensus         6 ~~~~~~i-~-~~~-vvvy~~g~~~~~~Cp~C~~ak~~L~~~--------~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~i   74 (109)
T 1wik_A            6 SGLKVLT-N-KAS-VMLFMKGNKQEAKCGFSKQILEILNST--------GVEYETFDILEDEEVRQGLKTFSNWPTYPQL   74 (109)
T ss_dssp             CCHHHHH-T-TSS-EEEEESSTTTCCCSSTHHHHHHHHHHT--------CSCEEEEESSSCHHHHHHHHHHHSCCSSCEE
T ss_pred             HHHHHHh-c-cCC-EEEEEecCCCCCCCchHHHHHHHHHHc--------CCCeEEEECCCCHHHHHHHHHHhCCCCCCEE
Confidence            4455655 2 233 445666     9999999999888776        46788889887643  1    2467789974


Q ss_pred             EEEeCCCc
Q 013976          356 LFFPAGNK  363 (432)
Q Consensus       356 ~~~~~g~~  363 (432)
                        |.+|..
T Consensus        75 --fi~g~~   80 (109)
T 1wik_A           75 --YVRGDL   80 (109)
T ss_dssp             --ECSSSE
T ss_pred             --EECCEE
Confidence              566654

>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A

Probab=96.60  E-value=0.00052  Score=56.41  Aligned_cols=93  Identities=11%  Similarity=0.112  Sum_probs=60.3

Q ss_pred             cCCCcEEEEEe-CCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc-----------------------ccCCCC
Q 013976          295 DESKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----------------------HRAKSD  350 (432)
Q Consensus       295 ~~~~~~lv~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-----------------------~~~~i~  350 (432)
                      .+++++++.|| ++||++|....+.|.++...|++. ++.++.|+.+....                       ..|++.
T Consensus        31 ~~Gk~vvl~f~~~~~cp~C~~e~~~l~~~~~~~~~~-~v~vv~is~d~~~~~~~~~~~~~~~fp~l~D~~~~v~~~ygv~  109 (164)
T 4gqc_A           31 KRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKA-NAEVLAISVDSPWCLKKFKDENRLAFNLLSDYNREVIKLYNVY  109 (164)
T ss_dssp             HTSSCEEEEECSCTTCCEECSSCEESCCCGGGGGGS-SSEEEEEESSCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCE
T ss_pred             cCCCEEEEEEeCCCCCCCcccchhhhhhhHHHhhcc-CceEEEecCCCHHHHHHHHHhcCcccceeecCchHHHHHcCCc
Confidence            35678888877 999999999888898888888764 67777787664221                       112331


Q ss_pred             ----------CCceEEEE-eCCCcccCce--eccCCCCHHHHHHHHHhcCC
Q 013976          351 ----------GFPTILFF-PAGNKSFDPI--NVDVDRTVVALYKFLKKNAS  388 (432)
Q Consensus       351 ----------~~P~i~~~-~~g~~~~~~~--~y~g~~~~~~l~~fi~~~~~  388 (432)
                                ..|+.++. ++|......+  ...+..+.+.+++.|++.++
T Consensus       110 ~~~~~~~~~~~~p~tflID~~G~I~~~~~~~~~~~~~~~~eil~~l~~l~~  160 (164)
T 4gqc_A          110 HEDLKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDYDEVVREANKIAG  160 (164)
T ss_dssp             EEEETTEEEEECCEEEEECTTSBEEEEEECSCTTCCCCHHHHHHHHHHHHH
T ss_pred             ccccccCcCCeeeEEEEECCCCEEEEEEEeCCCCCCCCHHHHHHHHHHHhc
Confidence                      36777777 4454321000  11234578888888877653

>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}

Probab=96.54  E-value=0.0046  Score=51.57  Aligned_cols=93  Identities=9%  Similarity=-0.049  Sum_probs=62.5

Q ss_pred             CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCc-eEEEEEecCCc--------ccccchhhhh----------------
Q 013976          167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNE--------DVGKPVSEYF----------------  220 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~-i~f~~vd~~~~--------~~~~~l~~~~----------------  220 (432)
                      .++.+++.|+++| +.|....+.+.+++.+|.++ +.++.|+++..        +....+++.+                
T Consensus        46 ~gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~  125 (183)
T 2obi_A           46 RGFVCIVTNVASQCGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDD  125 (183)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHTTTCCSEEBCCCCCSSTT
T ss_pred             CCCEEEEEEeCCCCCCcHHHHHHHHHHHHHHhcCCeEEEEEECCCCCCCCCCCHHHHHHHHHHcCCCceEEeeeccCCcc
Confidence            4567788889999 99999999999999999864 88888876520        0011111222                


Q ss_pred             ---------------CCCC---CCCcEEEEEeCCCCceecCCCCCCHHHHHHHHHHH
Q 013976          221 ---------------GITG---EAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDF  259 (432)
Q Consensus       221 ---------------~i~~---~~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~  259 (432)
                                     |+.+   ...|+.++++.+....+.+.|..+.+.|.+.|+.+
T Consensus       126 ~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~l  182 (183)
T 2obi_A          126 AHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPHY  182 (183)
T ss_dssp             SCHHHHHHHTSTTTCCSSSSSCCSTTCEEEECTTSCEEEEECTTSCTHHHHTTSGGG
T ss_pred             hhHHHHHhhccCCCCCcccccccccceEEEECCCCCEEEEeCCCCCHHHHHHHHHHh
Confidence                           2211   01378778876665666677888888887776654

>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A

Probab=96.53  E-value=0.01  Score=49.22  Aligned_cols=95  Identities=8%  Similarity=0.039  Sum_probs=64.0

Q ss_pred             CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCc-eEEEEEecCC--------cccccchhhh-hCCCCC----------
Q 013976          167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDN--------EDVGKPVSEY-FGITGE----------  225 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~-i~f~~vd~~~--------~~~~~~l~~~-~~i~~~----------  225 (432)
                      .++.++|.|+++| +.|....+.+.+++++|+++ +.++.|.++.        .+....+++. +++.-.          
T Consensus        37 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~  116 (180)
T 3kij_A           37 KGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKILGS  116 (180)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHTTTSEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCCCSST
T ss_pred             CCCEEEEEEEecCCCCcHHHHHHHHHHHHHhccCCeEEEEEECCccccCCCCCHHHHHHHHHHhcCCCCceeeeeeccCc
Confidence            4557778889999 99999999999999999875 8888887543        1112334454 544210          


Q ss_pred             --------------CCcE----EEEEeCCCCceecCCCCCCHHHHHHHHHHHhc
Q 013976          226 --------------APKV----LAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  261 (432)
Q Consensus       226 --------------~~P~----i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  261 (432)
                                    ..|.    .++++.++...+.+.|..+.+.+.+.|..++.
T Consensus       117 ~~~~~~~~~~~~~~~~p~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~lL~  170 (180)
T 3kij_A          117 EGEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPIEVIRPDIAALVR  170 (180)
T ss_dssp             TCCHHHHHHHHHHTCCCSSTTCEEEECTTSCEEEEECTTCCGGGTHHHHHHHHH
T ss_pred             cccHHHHHHHhcCCCCccccceEEEECCCCCEEEEECCCCCHHHHHHHHHHHHH
Confidence                          1354    55666655556667787787777777766654

>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}

Probab=96.52  E-value=0.0035  Score=54.90  Aligned_cols=87  Identities=8%  Similarity=0.083  Sum_probs=62.9

Q ss_pred             CCCcEEEEEeC-CCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc------------------------------
Q 013976          296 ESKDVLLEIYA-PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------------------------------  344 (432)
Q Consensus       296 ~~~~~lv~f~~-~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~------------------------------  344 (432)
                      .++.+||+||+ .||..|....+.|.++...|++. ++.++.|.++....                              
T Consensus        76 ~Gk~vvL~F~~~~~cp~C~~el~~l~~l~~~~~~~-gv~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~v~  154 (240)
T 3qpm_A           76 RGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRAI-NTEVVACSVDSQFTHLAWIITPRKQGGLGPMKIPLLSDLTHQIS  154 (240)
T ss_dssp             TTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHTT-TEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTSHHH
T ss_pred             CCCEEEEEEECCCCCCchHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHHHHHhhcCCCCCceeEEeCchHHHH
Confidence            35789999999 99999999999999999999864 68888888764221                              


Q ss_pred             ccCCCC------CCceEEEE-eCCCcccCceeccC----CCCHHHHHHHHHhc
Q 013976          345 HRAKSD------GFPTILFF-PAGNKSFDPINVDV----DRTVVALYKFLKKN  386 (432)
Q Consensus       345 ~~~~i~------~~P~i~~~-~~g~~~~~~~~y~g----~~~~~~l~~fi~~~  386 (432)
                      ..|++.      .+|+.+++ ++|..+.   .+.+    ..+.+.+++.|+..
T Consensus       155 ~~ygv~~~~~g~~~p~~flID~~G~I~~---~~~~~~~~~~~~~eil~~l~~l  204 (240)
T 3qpm_A          155 KDYGVYLEDQGHTLRGLFIIDEKGVLRQ---ITMNDLPVGRSVDETLRLVQAF  204 (240)
T ss_dssp             HHTTCEETTTTEECEEEEEECTTSBEEE---EEEECTTBCCCHHHHHHHHHHH
T ss_pred             HHhCCccccCCCccceEEEEcCCCeEEE---EEecCCCCCCCHHHHHHHHHHh
Confidence            123554      57999999 4554432   2222    56778888888764

>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}

Probab=96.51  E-value=0.0026  Score=53.27  Aligned_cols=44  Identities=18%  Similarity=0.238  Sum_probs=34.6

Q ss_pred             CC-cEEEEEeCCCChhhhh-hHHHHHHHHHHhcCCCCEE-EEEEeCCC
Q 013976          297 SK-DVLLEIYAPWCGHCQA-FEPTYNKLAKHLRGVDSIV-IAKMDGTT  341 (432)
Q Consensus       297 ~~-~~lv~f~~~~c~~c~~-~~~~~~~la~~~~~~~~~~-~~~id~~~  341 (432)
                      ++ .+|++||+.||..|.. -.|.|.+++..|+.. ++. ++-|+.+.
T Consensus        56 Gk~vvL~f~~a~wcp~C~~~e~p~l~~~~~~~~~~-gv~~vv~Is~d~  102 (184)
T 3uma_A           56 GKRVVLFAVPGAFTPTCSLNHLPGYLENRDAILAR-GVDDIAVVAVND  102 (184)
T ss_dssp             TSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTT-TCCEEEEEESSC
T ss_pred             CCCEEEEEEcCCCCCCcCHHHHHHHHHHHHHHHHc-CCCEEEEEECCC
Confidence            45 4566677999999999 699999999999864 566 77777654

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=96.47  E-value=0.0015  Score=46.23  Aligned_cols=58  Identities=12%  Similarity=0.087  Sum_probs=43.8

Q ss_pred             ceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEE
Q 013976          171 NQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAY  232 (432)
Q Consensus       171 ~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i  232 (432)
                      .+++|+++| +.|+.+.+.+++++.++...+.++.+|.+. . ...+++.+|+...  |++++
T Consensus         3 ~~~~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~-~-~~~~~~~~gv~~v--Pt~~i   61 (80)
T 2k8s_A            3 SKAIFYHAGCPVCVSAEQAVANAIDPSKYTVEIVHLGTDK-A-RIAEAEKAGVKSV--PALVI   61 (80)
T ss_dssp             EEEEEEECSCHHHHHHHHHHHHHSCTTTEEEEEEETTTCS-S-THHHHHHHTCCEE--EEEEE
T ss_pred             ceEEEeCCCCCchHHHHHHHHHHHHhcCCeEEEEEecCCh-h-hHHHHHHcCCCcC--CEEEE
Confidence            367888999 999999999999988875555555555431 1 4577889999887  99976

>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}

Probab=96.43  E-value=0.01  Score=47.45  Aligned_cols=80  Identities=19%  Similarity=0.333  Sum_probs=57.4

Q ss_pred             CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCC-----c----------------------------
Q 013976          296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT-----N----------------------------  342 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~-----~----------------------------  342 (432)
                      +.+.+|+.|..++|++|+.+.+.+.++     +  ++.+...+.-.     +                            
T Consensus        13 ~a~~~vv~f~D~~Cp~C~~~~~~l~~l-----~--~v~v~~~~~P~~~~~~~s~~~a~a~~ca~d~~~a~~~~~~~g~~~   85 (147)
T 3gv1_A           13 NGKLKVAVFSDPDCPFCKRLEHEFEKM-----T--DVTVYSFMMPIAGLHPDAARKAQILWCQPDRAKAWTDWMRKGKFP   85 (147)
T ss_dssp             TCCEEEEEEECTTCHHHHHHHHHHTTC-----C--SEEEEEEECCCTTTCTTHHHHHHHHHTSSSHHHHHHHHHHHCCCC
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHhhc-----C--ceEEEEEEccccccChhHHHHHHHHHcCCCHHHHHHHHHhCCCCC
Confidence            457889999999999999999887654     2  35554433111     0                            


Q ss_pred             --------cc-------ccCCCCCCceEEEEeCCCcccCceeccCCCCHHHHHHHHHhcCCC
Q 013976          343 --------EH-------HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASI  389 (432)
Q Consensus       343 --------~~-------~~~~i~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~  389 (432)
                              ..       ..++|+++|++++ .+|.      .+.|..+.+.|.++|.+....
T Consensus        86 ~~~~~~~~~v~~~~~la~~~gI~gtPt~vi-~nG~------~i~G~~~~~~l~~~i~~~~~~  140 (147)
T 3gv1_A           86 VGGSICDNPVAETTSLGEQFGFNGTPTLVF-PNGR------TQSGYSPMPQLEEIIRKNQQE  140 (147)
T ss_dssp             TTCCCCSCSHHHHHHHHHHTTCCSSCEEEC-TTSC------EEESCCCTTHHHHHHHHTSCC
T ss_pred             CccHHHHHHHHHHHHHHHHhCCCccCEEEE-ECCE------EeeCCCCHHHHHHHHHHHHHh
Confidence                    00       2459999999998 5554      467888999999999887653

>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0

Probab=96.40  E-value=0.0029  Score=48.31  Aligned_cols=53  Identities=9%  Similarity=0.253  Sum_probs=37.5

Q ss_pred             EEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc---------ccCCCCCCceEEEEeCCCc
Q 013976          301 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH---------HRAKSDGFPTILFFPAGNK  363 (432)
Q Consensus       301 lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~---------~~~~i~~~P~i~~~~~g~~  363 (432)
                      +++|+++||++|..+.+.|.++        ++.+..+|++..+.         ...+..++|++.+  +|+.
T Consensus        19 v~vy~~~~Cp~C~~ak~~L~~~--------~i~~~~~dvd~~~~~~~~~~~l~~~~g~~tvP~vfi--~g~~   80 (114)
T 3h8q_A           19 VVIFSKSYCPHSTRVKELFSSL--------GVECNVLELDQVDDGARVQEVLSEITNQKTVPNIFV--NKVH   80 (114)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT--------TCCCEEEETTTSTTHHHHHHHHHHHHSCCSSCEEEE--TTEE
T ss_pred             EEEEEcCCCCcHHHHHHHHHHc--------CCCcEEEEecCCCChHHHHHHHHHHhCCCccCEEEE--CCEE
Confidence            5569999999999999888876        35566677765321         2346788999855  6643

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}

Probab=95.39  E-value=0.00054  Score=54.52  Aligned_cols=68  Identities=16%  Similarity=0.246  Sum_probs=50.8

Q ss_pred             CC-cceEEEEEeC-cchhhhHHHHHHHHHhcc---CceEEEEEecCCcc----------------------cccchhhhh
Q 013976          168 PI-KNQLLLFAVS-NDSEKLLPVFEEAAKSFK---GKLIFVYVQMDNED----------------------VGKPVSEYF  220 (432)
Q Consensus       168 ~~-~~~i~~~~~~-~~~~~~~~~~~~~a~~~~---~~i~f~~vd~~~~~----------------------~~~~l~~~~  220 (432)
                      ++ ++++.|+++| +.|+...+.+.+++++++   ..+.++.++++...                      ....+++.|
T Consensus        25 gk~~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (143)
T 2lus_A           25 DKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMMESHGDWLAIPYRSGPASNVTAKY  104 (143)
Confidence            44 6788899999 999999999999999993   35777777766421                      013577888


Q ss_pred             CCCCCCCcEEEEEeCCC
Q 013976          221 GITGEAPKVLAYTGNDD  237 (432)
Q Consensus       221 ~i~~~~~P~i~i~~~~~  237 (432)
                      |+...  |++++++.++
T Consensus       105 ~v~~~--P~~~lid~~G  119 (143)
T 2lus_A          105 GITGI--PALVIVKKDG  119 (143)
Confidence            88776  8888887443

>3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0

Probab=96.33  E-value=0.0015  Score=55.04  Aligned_cols=43  Identities=19%  Similarity=0.367  Sum_probs=35.3

Q ss_pred             CCcEEEEEeCCCChhhhhhHHHH---HHHHHHhcCCCCEEEEEEeCCC
Q 013976          297 SKDVLLEIYAPWCGHCQAFEPTY---NKLAKHLRGVDSIVIAKMDGTT  341 (432)
Q Consensus       297 ~~~~lv~f~~~~c~~c~~~~~~~---~~la~~~~~~~~~~~~~id~~~  341 (432)
                      .++++|.|++.||++|+.+.|.+   .++.+.+.+  ++.|..++..-
T Consensus        14 ~~~~vvef~d~~Cp~C~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~   59 (189)
T 3l9v_A           14 DAPAVVEFFSFYCPPCYAFSQTMGVDQAIRHVLPQ--GSRMVKYHVSL   59 (189)
T ss_dssp             TCCSEEEEECTTCHHHHHHHHTSCHHHHHHTTCCT--TCCEEEEECSS
T ss_pred             CCCEEEEEECCCChhHHHHhHhccchHHHHHhCCC--CCEEEEEechh
Confidence            36889999999999999999986   678777765  57787777654

>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A

Probab=96.33  E-value=0.01  Score=50.59  Aligned_cols=42  Identities=7%  Similarity=-0.006  Sum_probs=36.0

Q ss_pred             CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCc-eEEEEEecC
Q 013976          167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMD  208 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~-i~f~~vd~~  208 (432)
                      .+++++|.|+++| +.|....+.+.+++++|.++ +.++.|+++
T Consensus        46 ~Gk~vlv~FwatwC~~C~~e~p~l~~l~~~~~~~g~~vv~v~~d   89 (208)
T 2f8a_A           46 RGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCN   89 (208)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHccCCCeEEEEEECC
Confidence            4567788899999 88999999999999999865 888888875

>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0

Probab=96.33  E-value=0.0022  Score=52.58  Aligned_cols=85  Identities=11%  Similarity=0.069  Sum_probs=54.5

Q ss_pred             CCcEEEEEe-CCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc-------------------------ccCCCC
Q 013976          297 SKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-------------------------HRAKSD  350 (432)
Q Consensus       297 ~~~~lv~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-------------------------~~~~i~  350 (432)
                      +++++|.|| +.||.+|....+.+.++...    .++.++.|+.+....                         ..|++.
T Consensus        46 Gk~vvl~f~~~~~c~~C~~~~~~l~~~~~~----~~~~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~  121 (166)
T 3p7x_A           46 GKKKLISVVPSIDTGVCDQQTRKFNSDASK----EEGIVLTISADLPFAQKRWCASAGLDNVITLSDHRDLSFGENYGVV  121 (166)
T ss_dssp             TSCEEEEECSCTTSHHHHHHHHHHHHHSCT----TTSEEEEEESSCHHHHHHHHHHHTCSSCEEEECTTTCHHHHHHTCE
T ss_pred             CCcEEEEEECCCCCCccHHHHHHHHHHhhc----CCCEEEEEECCCHHHHHHHHHHcCCCceEEccCCchhHHHHHhCCc
Confidence            578888888 78999999988888888665    257777777654211                         123443


Q ss_pred             C------CceEEEE-eCCCcccCce--eccCCCCHHHHHHHHHh
Q 013976          351 G------FPTILFF-PAGNKSFDPI--NVDVDRTVVALYKFLKK  385 (432)
Q Consensus       351 ~------~P~i~~~-~~g~~~~~~~--~y~g~~~~~~l~~fi~~  385 (432)
                      .      .|+.+++ ++|..+...+  ...+..+.+.+++.|++
T Consensus       122 ~~~~g~~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~il~~l~~  165 (166)
T 3p7x_A          122 MEELRLLARAVFVLDADNKVVYKEIVSEGTDFPDFDAALAAYKN  165 (166)
T ss_dssp             ETTTTEECCEEEEECTTCBEEEEEECSBTTSCCCHHHHHHHHHT
T ss_pred             cccCCceeeEEEEECCCCeEEEEEEcCCcccCCCHHHHHHHHhc
Confidence            3      7888888 4554431000  02235567888888765

>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}

Probab=96.32  E-value=0.0078  Score=50.28  Aligned_cols=93  Identities=8%  Similarity=-0.044  Sum_probs=61.2

Q ss_pred             CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCc-eEEEEEecCC----c----ccccchhhhhCCC-------------
Q 013976          167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDN----E----DVGKPVSEYFGIT-------------  223 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~-i~f~~vd~~~----~----~~~~~l~~~~~i~-------------  223 (432)
                      .++.+++.|+++| +.|....+.+.+++.+|.++ +.++.+.++.    .    +....+++.+++.             
T Consensus        48 ~Gk~vlv~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~  127 (185)
T 2gs3_A           48 RGFVCIVTNVASQGGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDD  127 (185)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHHHHTTCCSEEBCCCBSSSTT
T ss_pred             CCCEEEEEEecCCCCchHHHHHHHHHHHHHhhcCCeEEEEEECcccCCCCCCCHHHHHHHHHHcCCCCeeeeeeccCChh
Confidence            4557788889999 99999999999999999864 8888887652    0    0012233333331             


Q ss_pred             ------------------CC---CCcEEEEEeCCCCceecCCCCCCHHHHHHHHHHH
Q 013976          224 ------------------GE---APKVLAYTGNDDAKKHILDGELTLDKIKTFGEDF  259 (432)
Q Consensus       224 ------------------~~---~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~  259 (432)
                                        +.   ..|+.++++.++...+.+.|..+.+.|.+.|+..
T Consensus       128 ~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~l  184 (185)
T 2gs3_A          128 AHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPHY  184 (185)
T ss_dssp             BCHHHHHHTTSGGGCCSSSSSCCSSCCEEEECTTSCEEEEECTTSCGGGGGGGHHHH
T ss_pred             hhHHHHHHHhhcccccccCCcccccceEEEECCCCCEEEeeCCCCCHHHHHHHHHHh
Confidence                              10   0256667766555556667777777777766654

>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A

Probab=96.29  E-value=0.0081  Score=49.38  Aligned_cols=96  Identities=13%  Similarity=0.026  Sum_probs=63.1

Q ss_pred             CCCcceEEEEEeC-c-chhhhHHHHHHHHHhccC---ceEEEEEecCCc----ccccchh--------------------
Q 013976          167 SPIKNQLLLFAVS-N-DSEKLLPVFEEAAKSFKG---KLIFVYVQMDNE----DVGKPVS--------------------  217 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~-~~~~~~~~~~~~a~~~~~---~i~f~~vd~~~~----~~~~~l~--------------------  217 (432)
                      .++++++.|++.| + .|....+.+.++..++.+   ++.++.|.++..    +....++                    
T Consensus        32 ~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~d~~~~~~~~~~~~~~~~~~~~~l~d~~~~~  111 (174)
T 1xzo_A           32 KGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKPKQLKKFAANYPLSFDNWDFLTGYSQSE  111 (174)
T ss_dssp             TTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTTSCCCGGGEEEEBCSCHHH
T ss_pred             CCCEEEEEEEcCCCcchhHHHHHHHHHHHHHhhhcCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCCcceEEEeCCCHHH
Confidence            3557788899999 6 899999999999999875   388888887521    0001111                    


Q ss_pred             -hhhCC--------------CCCCCcEEEEEeCCCCceecCCCCC--CHHHHHHHHHHHhcC
Q 013976          218 -EYFGI--------------TGEAPKVLAYTGNDDAKKHILDGEL--TLDKIKTFGEDFLEG  262 (432)
Q Consensus       218 -~~~~i--------------~~~~~P~i~i~~~~~~~~y~~~~~~--~~~~i~~fi~~~~~g  262 (432)
                       +.|++              .....|+.++++.++...+.+.|..  +.+.|.+.|+..++.
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~ll~~  173 (174)
T 1xzo_A          112 IEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDYNGVENTPYDDIISDVKSASTL  173 (174)
T ss_dssp             HHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEEEESSSSCCHHHHHHHHHHHTCC
T ss_pred             HHHHHHhhcCeeEeecCCCCeeeeeeEEEEECCCCeEEEEEcCCCCCCHHHHHHHHHHHHhc
Confidence             22221              0123477778876654555555654  588999999988753

>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A

Probab=96.28  E-value=0.0045  Score=51.20  Aligned_cols=44  Identities=14%  Similarity=0.296  Sum_probs=31.9

Q ss_pred             CCcE-EEEEeCCCChhhh-hhHHHHHHHHHHhcCCCCEEEEE-EeCCC
Q 013976          297 SKDV-LLEIYAPWCGHCQ-AFEPTYNKLAKHLRGVDSIVIAK-MDGTT  341 (432)
Q Consensus       297 ~~~~-lv~f~~~~c~~c~-~~~~~~~~la~~~~~~~~~~~~~-id~~~  341 (432)
                      ++.+ |++|++.||..|. .-.|.|.+++..|+.. ++.++- +..+.
T Consensus        43 gk~vvL~f~pa~wcp~C~~~e~p~l~~~~~~~~~~-gv~vv~~iS~D~   89 (173)
T 3mng_A           43 GKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAK-GVQVVACLSVND   89 (173)
T ss_dssp             TSEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTT-TCCEEEEEESSC
T ss_pred             CCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEEcCCC
Confidence            4545 4555699999999 5889999999999864 455543 65554

>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C

Probab=96.27  E-value=0.0041  Score=54.94  Aligned_cols=45  Identities=9%  Similarity=0.168  Sum_probs=38.7

Q ss_pred             CCCcEEEEEe-CCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCC
Q 013976          296 ESKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT  341 (432)
Q Consensus       296 ~~~~~lv~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~  341 (432)
                      .++.+||+|| +.||..|....+.|.+++..|++. ++.++.|.++.
T Consensus        90 kGK~vvL~F~~a~~cp~C~~el~~l~~l~~~~~~~-gv~vv~IS~D~  135 (254)
T 3tjj_A           90 RGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSI-NTEVVACSVDS  135 (254)
T ss_dssp             TTSEEEEEECSCTTCSSCCHHHHHHHHTHHHHHTT-TEEEEEEESSC
T ss_pred             CCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHc-CCEEEEEcCCC
Confidence            3578899998 999999999999999999999864 68888888764

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A

Probab=96.26  E-value=0.0099  Score=48.13  Aligned_cols=89  Identities=10%  Similarity=0.035  Sum_probs=61.6

Q ss_pred             cceEEEE-EeC-cchhhhHHHHHHHHHhccC-ceEEEEEecCCcc------------------c--ccchhhhhCCC---
Q 013976          170 KNQLLLF-AVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNED------------------V--GKPVSEYFGIT---  223 (432)
Q Consensus       170 ~~~i~~~-~~~-~~~~~~~~~~~~~a~~~~~-~i~f~~vd~~~~~------------------~--~~~l~~~~~i~---  223 (432)
                      +.++.|| +.| +.|....+.+.+++.++.+ .+.++.|.++..+                  .  ...+.+.||+.   
T Consensus        38 ~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~~~  117 (160)
T 1xvw_A           38 NVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPPPTHKIWATQSGFTFPLLSDFWPHGAVSQAYGVFNEQ  117 (160)
T ss_dssp             EEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTTTTHHHHHTTCEETT
T ss_pred             CEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHhcCCCceEEecCCcChHHHHHcCCcccc
Confidence            5677787 889 9999999999999999975 4888888775311                  0  34678889987   


Q ss_pred             -CCCCcEEEEEeCCCCceecCCCCC----CHHHHHHHHHH
Q 013976          224 -GEAPKVLAYTGNDDAKKHILDGEL----TLDKIKTFGED  258 (432)
Q Consensus       224 -~~~~P~i~i~~~~~~~~y~~~~~~----~~~~i~~fi~~  258 (432)
                       +.+.|+.++++.++...+.+.|..    ..+.+.+.++.
T Consensus       118 ~~~p~~~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~  157 (160)
T 1xvw_A          118 AGIANRGTFVVDRSGIIRFAEMKQPGEVRDQRLWTDALAA  157 (160)
T ss_dssp             TTEECSEEEEECTTSBEEEEEECCTTCCCCHHHHHHHHHH
T ss_pred             CCCeeeeEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence             552227777776654455554533    45666666654

>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A*

Probab=95.91  E-value=0.0026  Score=49.79  Aligned_cols=56  Identities=11%  Similarity=0.240  Sum_probs=37.1

Q ss_pred             EEEEeCCCChhhhhh-HHHHHHHHHHhcCCCCEEEEEEeCCCcc--------c-ccCCCCCCceEEEEeCCCc
Q 013976          301 LLEIYAPWCGHCQAF-EPTYNKLAKHLRGVDSIVIAKMDGTTNE--------H-HRAKSDGFPTILFFPAGNK  363 (432)
Q Consensus       301 lv~f~~~~c~~c~~~-~~~~~~la~~~~~~~~~~~~~id~~~~~--------~-~~~~i~~~P~i~~~~~g~~  363 (432)
                      +++|+++||++|..+ .+.+.+++.     ..+.+..+|++..+        . ...+..++|++  |-+|..
T Consensus        39 Vvvy~~~~Cp~C~~a~k~~L~~~~~-----~~i~~~~vdvd~~~~~~~~~~~L~~~~g~~tVP~v--fi~g~~  104 (129)
T 3ctg_A           39 VFVAAKTYCPYCKATLSTLFQELNV-----PKSKALVLELDEMSNGSEIQDALEEISGQKTVPNV--YINGKH  104 (129)
T ss_dssp             EEEEECTTCHHHHHHHHHHHTTSCC-----CGGGEEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE--EETTEE
T ss_pred             EEEEECCCCCchHHHHHHHHHhcCc-----cCCCcEEEEccccCCHHHHHHHHHHHhCCCCCCEE--EECCEE
Confidence            678999999999998 777766531     12445555655432        1 24678899996  556643

>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0

Probab=95.89  E-value=0.0046  Score=51.75  Aligned_cols=40  Identities=30%  Similarity=0.504  Sum_probs=34.7

Q ss_pred             CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCC
Q 013976          297 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT  340 (432)
Q Consensus       297 ~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~  340 (432)
                      ++++||.|++.||++|..+.|.+.++.+.+ +   +.|..+++.
T Consensus        22 ~~~~vvef~d~~Cp~C~~~~~~~~~~~~~~-~---v~~~~~p~~   61 (185)
T 3feu_A           22 GMAPVTEVFALSCGHCRNMENFLPVISQEA-G---TDIGKMHIT   61 (185)
T ss_dssp             CCCSEEEEECTTCHHHHHHGGGHHHHHHHH-T---SCCEEEECC
T ss_pred             CCCEEEEEECCCChhHHHhhHHHHHHHHHh-C---CeEEEEecc
Confidence            578999999999999999999999999998 3   666677764

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10

Probab=95.82  E-value=0.017  Score=48.98  Aligned_cols=93  Identities=15%  Similarity=0.096  Sum_probs=66.5

Q ss_pred             CCcceEEEE-EeC-cchhhhHHHHHHHHHhccC-ceEEEEEecCCcc-------------------------cccchhhh
Q 013976          168 PIKNQLLLF-AVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNED-------------------------VGKPVSEY  219 (432)
Q Consensus       168 ~~~~~i~~~-~~~-~~~~~~~~~~~~~a~~~~~-~i~f~~vd~~~~~-------------------------~~~~l~~~  219 (432)
                      ++..++.|| +.| +.|....+.+.+++.+|++ .+.|+.|.++...                         ....+.+.
T Consensus        36 gk~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~~~v~vi~Is~D~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~  115 (202)
T 1uul_A           36 GKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMKS  115 (202)
T ss_dssp             TSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTCHHHHH
T ss_pred             CCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCCCCCceeEEECCchHHHHH
Confidence            456677777 788 8999999999999999975 4888888775410                         02456788


Q ss_pred             hCCCC----CCCcEEEEEeCCCCceecCCC----CCCHHHHHHHHHHHh
Q 013976          220 FGITG----EAPKVLAYTGNDDAKKHILDG----ELTLDKIKTFGEDFL  260 (432)
Q Consensus       220 ~~i~~----~~~P~i~i~~~~~~~~y~~~~----~~~~~~i~~fi~~~~  260 (432)
                      ||+..    ...|++++++.++...+.+.|    ..+.+.+.+.++.+.
T Consensus       116 ygv~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~ell~~l~~l~  164 (202)
T 1uul_A          116 YGVLKEEDGVAYRGLFIIDPKQNLRQITVNDLPVGRDVDEALRLVKAFQ  164 (202)
T ss_dssp             HTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             cCCccCCCCceeeEEEEECCCCEEEEEEeCCCCCCCCHHHHHHHHHHhh
Confidence            88871    124988888776544444333    356789999998876

>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10

Probab=95.76  E-value=0.021  Score=49.17  Aligned_cols=95  Identities=17%  Similarity=0.147  Sum_probs=67.8

Q ss_pred             CCcceEEEE-EeC-cchhhhHHHHHHHHHhccC-ceEEEEEecCCcc-------------------------cccchhhh
Q 013976          168 PIKNQLLLF-AVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNED-------------------------VGKPVSEY  219 (432)
Q Consensus       168 ~~~~~i~~~-~~~-~~~~~~~~~~~~~a~~~~~-~i~f~~vd~~~~~-------------------------~~~~l~~~  219 (432)
                      ++..++.|| +.| +.|....+.+.+++.+|++ .+.++.|.++...                         ....+.+.
T Consensus        56 Gk~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~i~~~  135 (220)
T 1zye_A           56 GKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRD  135 (220)
T ss_dssp             TSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHHH
T ss_pred             CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHhCCCcCCceEEEECCcHHHHHH
Confidence            456677778 788 9999999999999999964 4888888765310                         02457788


Q ss_pred             hCCC----CCCCcEEEEEeCCCCceecCCC----CCCHHHHHHHHHHHhcC
Q 013976          220 FGIT----GEAPKVLAYTGNDDAKKHILDG----ELTLDKIKTFGEDFLEG  262 (432)
Q Consensus       220 ~~i~----~~~~P~i~i~~~~~~~~y~~~~----~~~~~~i~~fi~~~~~g  262 (432)
                      ||+.    +...|++++++.+....+.+.|    ..+.+++.+.++.+...
T Consensus       136 ygv~~~~~g~~~P~~~liD~~G~I~~~~~g~~~~~~~~~ell~~l~~l~~~  186 (220)
T 1zye_A          136 YGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFV  186 (220)
T ss_dssp             TTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHHHT
T ss_pred             hCCeecCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhhhh
Confidence            8887    1134999999776644444333    36778999999987753

>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A

Probab=95.74  E-value=0.055  Score=44.01  Aligned_cols=93  Identities=10%  Similarity=0.028  Sum_probs=63.5

Q ss_pred             CCCcceEEEEEeC--cchhhhHHHHHHHHHhccCceEEEEEecCCccc--------------------ccchhhhhCCCC
Q 013976          167 SPIKNQLLLFAVS--NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDV--------------------GKPVSEYFGITG  224 (432)
Q Consensus       167 ~~~~~~i~~~~~~--~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~--------------------~~~l~~~~~i~~  224 (432)
                      .+++.++.||+.|  +.|....+.+.+++++| ..+.++.|+.+..+.                    ...+.+.||+..
T Consensus        43 ~gk~~vl~F~~~~~C~~C~~~~~~l~~l~~~~-~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~v~~  121 (167)
T 2jsy_A           43 KGKVTIISVIPSIDTGVCDAQTRRFNEEAAKL-GDVNVYTISADLPFAQARWCGANGIDKVETLSDHRDMSFGEAFGVYI  121 (167)
T ss_dssp             TTSCEEEEECSCSTTSHHHHTHHHHHHHHHHH-SSCEEEEEECSSGGGTSCCGGGSSCTTEEEEEGGGTCHHHHHTTCBB
T ss_pred             CCCeEEEEEecCCCCCchHHHHHHHHHHHHHc-CCCEEEEEECCCHHHHHHHHHhcCCCCceEeeCCchhHHHHHhCCcc
Confidence            3556778888887  78999999999999999 668888887764210                    234556677654


Q ss_pred             C----CCcEEEEEeCCCCceecCCC-----CCCHHHHHHHHHHHh
Q 013976          225 E----APKVLAYTGNDDAKKHILDG-----ELTLDKIKTFGEDFL  260 (432)
Q Consensus       225 ~----~~P~i~i~~~~~~~~y~~~~-----~~~~~~i~~fi~~~~  260 (432)
                      .    ..|+.++++.++...+.+.|     ..+.+.+.+.++.++
T Consensus       122 ~~~g~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~~l~~~l~~ll  166 (167)
T 2jsy_A          122 KELRLLARSVFVLDENGKVVYAEYVSEATNHPNYEKPIEAAKALV  166 (167)
T ss_dssp             TTTCSBCCEEEEECTTSCEEEEEECSBTTSCCCSHHHHHHHHHHH
T ss_pred             ccCCceeeEEEEEcCCCcEEEEEecCCcCCCCCHHHHHHHHHHhh
Confidence            2    13888888766555554432     335678888887654

>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A

Probab=95.70  E-value=0.03  Score=47.33  Aligned_cols=97  Identities=6%  Similarity=-0.062  Sum_probs=65.3

Q ss_pred             CCCcceEEEEEeC-cc-hhhhHHHHHHHHHhcc----CceEEEEEecCCcc------------c-------------ccc
Q 013976          167 SPIKNQLLLFAVS-ND-SEKLLPVFEEAAKSFK----GKLIFVYVQMDNED------------V-------------GKP  215 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~-~~~~~~~~~~~a~~~~----~~i~f~~vd~~~~~------------~-------------~~~  215 (432)
                      .++.+++.|++.| ++ |....+.|.++..++.    +.+.++.|.++...            +             ...
T Consensus        40 ~Gk~vlv~F~at~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~Is~D~~~d~~~~~~~~~~~~~~~~~~l~~~~d~~~~  119 (200)
T 2b7k_A           40 LGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLSDFHPSILGLTGTFDEVKN  119 (200)
T ss_dssp             TTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHHHHHTTSCTTCEEEECCHHHHHH
T ss_pred             CCCEEEEEEECCCCcchhHHHHHHHHHHHHHHHHhhCCceEEEEEECCCCCCCHHHHHHHHHHcCCCceEEeCCHHHHHH
Confidence            3556778888899 76 9999999999777765    35777777765210            0             124


Q ss_pred             hhhhhCCC-CC-------------CCcEEEEEeCCCCceecCCCCCCHHHHHHHHHHHhcCC
Q 013976          216 VSEYFGIT-GE-------------APKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGK  263 (432)
Q Consensus       216 l~~~~~i~-~~-------------~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g~  263 (432)
                      +++.||+. ..             ..|+.++++.++...+.+.|..+.+.+.+.|...+..-
T Consensus       120 ~~~~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~~G~i~~~~~g~~~~~~~~~~i~~~l~~l  181 (200)
T 2b7k_A          120 ACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALGRNYDEKTGVDKIVEHVKSY  181 (200)
T ss_dssp             HHHHTTC--------------CTTTCCCEEEECTTSCEEEEECTTCCTTHHHHHHHHHHHHC
T ss_pred             HHHHcCcEEeeccccCCCCCceeeecceEEEECCCCcEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence            56778876 22             12366677766655666777788888888888877643

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A

Probab=95.68  E-value=0.0097  Score=42.30  Aligned_cols=77  Identities=9%  Similarity=0.155  Sum_probs=54.2

Q ss_pred             eEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcc-cccchhhhhC--CCCCCCcEEEEEeCCCCceecCCCCC
Q 013976          172 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED-VGKPVSEYFG--ITGEAPKVLAYTGNDDAKKHILDGEL  247 (432)
Q Consensus       172 ~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~-~~~~l~~~~~--i~~~~~P~i~i~~~~~~~~y~~~~~~  247 (432)
                      +++|+.+| +.|+.+.+.+.+++.++.+ +.+..+|..... ....+.+.+|  +...  |++++  ++  +..   |  
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~-i~~~~vdi~~~~~~~~~l~~~~~~~~~~v--P~i~~--~g--~~i---~--   70 (85)
T 1ego_A            3 TVIFGRSGCPYCVRAKDLAEKLSNERDD-FQYQYVDIRAEGITKEDLQQKAGKPVETV--PQIFV--DQ--QHI---G--   70 (85)
T ss_dssp             EEEECCTTSTHHHHHHHHHHHHHHHHSS-CEEEEECHHHHTCCSHHHHHHTCCCSCCS--CEEEE--TT--EEE---E--
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHhcCCC-ceEEEEecccChHHHHHHHHHhCCCCcee--CeEEE--CC--EEE---E--
Confidence            45666788 9999999999999998876 899999986521 0136777888  6666  99843  22  222   1  


Q ss_pred             CHHHHHHHHHHHh
Q 013976          248 TLDKIKTFGEDFL  260 (432)
Q Consensus       248 ~~~~i~~fi~~~~  260 (432)
                      ..+.|.+++++-+
T Consensus        71 ~~~~l~~~~~~~~   83 (85)
T 1ego_A           71 GYTDFAAWVKENL   83 (85)
T ss_dssp             SSHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhc
Confidence            2367888887643

>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10

Probab=95.65  E-value=0.016  Score=50.12  Aligned_cols=87  Identities=10%  Similarity=0.041  Sum_probs=59.2

Q ss_pred             cEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc---------------------------------c
Q 013976          299 DVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH---------------------------------H  345 (432)
Q Consensus       299 ~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~---------------------------------~  345 (432)
                      .+|++|+++||..|....+.+.+++..|++. ++.++.|.++....                                 .
T Consensus        34 vvL~~~~a~~cp~C~~el~~l~~l~~~f~~~-~v~vi~IS~D~~~~~~~~~~~i~~~~~~~~~~~~~fpil~D~~~~va~  112 (224)
T 1prx_A           34 GILFSHPRDFTPVCTTELGRAAKLAPEFAKR-NVKLIALSIDSVEDHLAWSKDINAYNSEEPTEKLPFPIIDDRNRELAI  112 (224)
T ss_dssp             EEEEEESCSSCHHHHHHHHHHHHHHHHHHTT-TEEEEEEESSCHHHHHHHHHHHHHHTTSCCCSCCSSCEEECTTCHHHH
T ss_pred             EEEEEECCCCCCCcHHHHHHHHHHHHHHHHC-CCEEEEEcCCCHHHHHHHHHHHHHhhCcccccCcCcceeecCchHHHH
Confidence            4666678999999999999999999999864 67888777764210                                 1


Q ss_pred             cCCCC------------CCceEEEEeCCCcccCcee-cc--CCCCHHHHHHHHHhcC
Q 013976          346 RAKSD------------GFPTILFFPAGNKSFDPIN-VD--VDRTVVALYKFLKKNA  387 (432)
Q Consensus       346 ~~~i~------------~~P~i~~~~~g~~~~~~~~-y~--g~~~~~~l~~fi~~~~  387 (432)
                      .|++.            .+|+++++.....+ +... +.  ..++.+.|+..|+...
T Consensus       113 ~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I-~~~~~~~~~~gr~~~eil~~i~~l~  168 (224)
T 1prx_A          113 LLGMLDPAEKDEKGMPVTARVVFVFGPDKKL-KLSILYPATTGRNFDEILRVVISLQ  168 (224)
T ss_dssp             HTTSSCSCTTCSSSCCTTCCEEEEECTTSBE-EEEEECCTTBCCCHHHHHHHHHHHH
T ss_pred             HhCCCCcccccCCCccccceEEEEECCCCEE-EEEEecCCCCCCCHHHHHHHHHHHH
Confidence            23442            47999999444333 1211 11  2468899988887654

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A

Probab=95.49  E-value=0.03  Score=47.86  Aligned_cols=94  Identities=11%  Similarity=0.151  Sum_probs=65.6

Q ss_pred             CCCcceEEEE-EeC-cchhhhHHHHHHHHHhccC-ceEEEEEecCCcc-------------------------cccchhh
Q 013976          167 SPIKNQLLLF-AVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNED-------------------------VGKPVSE  218 (432)
Q Consensus       167 ~~~~~~i~~~-~~~-~~~~~~~~~~~~~a~~~~~-~i~f~~vd~~~~~-------------------------~~~~l~~  218 (432)
                      .++..+|.|| +.| +.|....+.+.+++++|++ .+.++.|..+...                         ....+.+
T Consensus        51 ~gk~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~  130 (213)
T 2i81_A           51 GKKYVLLYFYPLDFTFVCPSEIIALDKALDAFHERNVELLGCSVDSKYTHLAWKKTPLAKGGIGNIKHTLLSDITKSISK  130 (213)
T ss_dssp             TTCEEEEEECSCTTSSHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHSSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred             CCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCccCCCceEEECCchHHHH
Confidence            3456677777 788 8999999999999999963 4777777665310                         0235677


Q ss_pred             hhCCC---CCCCcEEEEEeCCCCceecCCC----CCCHHHHHHHHHHHh
Q 013976          219 YFGIT---GEAPKVLAYTGNDDAKKHILDG----ELTLDKIKTFGEDFL  260 (432)
Q Consensus       219 ~~~i~---~~~~P~i~i~~~~~~~~y~~~~----~~~~~~i~~fi~~~~  260 (432)
                      .||+.   +...|+.++++.+....+.+.|    ..+.+.+.+.|+.+.
T Consensus       131 ~ygv~~~~g~~~p~~~lID~~G~i~~~~~~~~~~~~~~~ell~~l~~l~  179 (213)
T 2i81_A          131 DYNVLFDDSVSLRAFVLIDMNGIVQHLLVNNLAIGRSVDEILRIIDAIQ  179 (213)
T ss_dssp             HTTCEETTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred             HhCCccccCCcccEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence            88887   1124888888776644454433    356889999988876

>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A

Probab=95.47  E-value=0.014  Score=50.68  Aligned_cols=88  Identities=5%  Similarity=-0.045  Sum_probs=60.2

Q ss_pred             CcEEEEEe-CCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCcc-----------------c--------------c
Q 013976          298 KDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE-----------------H--------------H  345 (432)
Q Consensus       298 ~~~lv~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~-----------------~--------------~  345 (432)
                      +.+||+|| ++||..|....+.+.++...|+.. ++.++.|.++...                 .              .
T Consensus        30 ~~vvL~f~pa~~cpvC~~el~~l~~l~~ef~~~-~v~vigIS~D~~~~~~~~~~~i~~~~~~~~~~~fpil~D~~~~va~  108 (233)
T 2v2g_A           30 SWGVLFSHPRDFTPVSTTELGRVIQLEGDFKKR-GVKLIALSCDNVADHKEWSEDVKCLSGVKGDMPYPIIADETRELAV  108 (233)
T ss_dssp             SEEEEEECSCSSCHHHHHHHHHHHHTHHHHHHT-TEEEEEEESSCHHHHHHHHHHHHHHHTCCSSCSSCEEECTTCHHHH
T ss_pred             CeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHc-CCEEEEEcCCCHHHHHHHHHHHHHhhCcccCCceEEEECChHHHHH
Confidence            47888888 899999999999999999999753 6778777766421                 0              1


Q ss_pred             cCCCC------------CCceEEEEeCCCcccCcee-cc--CCCCHHHHHHHHHhcC
Q 013976          346 RAKSD------------GFPTILFFPAGNKSFDPIN-VD--VDRTVVALYKFLKKNA  387 (432)
Q Consensus       346 ~~~i~------------~~P~i~~~~~g~~~~~~~~-y~--g~~~~~~l~~fi~~~~  387 (432)
                      .|++.            .+|+++++.....+ +... +.  ..++.+.|++.|+...
T Consensus       109 ~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I-~~~~~~~~~~gr~~~eilr~l~~Lq  164 (233)
T 2v2g_A          109 KLGMVDPDERTSTGMPLTCRAVFIIGPDKKL-KLSILYPATTGRNFSEILRVIDSLQ  164 (233)
T ss_dssp             HTTCEEEEEECTTCCEEECEEEEEECTTSBE-EEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             HhCCcCcccccCCCcccccceEEEECCCCEE-EEEEecCCCCCCCHHHHHHHHHHHH
Confidence            23442            47899999444333 1211 21  1468899998887653

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=95.36  E-value=0.0038  Score=47.58  Aligned_cols=80  Identities=6%  Similarity=0.093  Sum_probs=50.1

Q ss_pred             ceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCc--ccccchhhhhCCCCCCCcEEEEEeCCCCceecCCCCC
Q 013976          171 NQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNE--DVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGEL  247 (432)
Q Consensus       171 ~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~--~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~~  247 (432)
                      .+++|+++| +.|+.+.+.+.+++..|    .++.+|....  .....+++.+|+...  |++ +. ++. ....+.|..
T Consensus        21 ~vv~f~a~~C~~C~~~~~~l~~~~~~~----~~v~v~~~~~~~~~~~~l~~~~~v~~~--Pt~-~~-~g~-~v~~~~~~~   91 (116)
T 2e7p_A           21 PVVVFSKTYCGYCNRVKQLLTQVGASY----KVVELDELSDGSQLQSALAHWTGRGTV--PNV-FI-GGK-QIGGCDTVV   91 (116)
T ss_dssp             SEEEEECTTCHHHHHHHHHHHHHTCCC----EEEEGGGSTTHHHHHHHHHHHHSCCSS--CEE-EE-TTE-EEECHHHHH
T ss_pred             CEEEEECCCChhHHHHHHHHHHcCCCe----EEEEccCCCChHHHHHHHHHHhCCCCc--CEE-EE-CCE-EECChHHHH
Confidence            356699999 99999999999886553    4444444331  001357889999887  999 44 221 222222322


Q ss_pred             ---CHHHHHHHHHHH
Q 013976          248 ---TLDKIKTFGEDF  259 (432)
Q Consensus       248 ---~~~~i~~fi~~~  259 (432)
                         +.+.|.+++...
T Consensus        92 ~~~~~~~l~~~l~~~  106 (116)
T 2e7p_A           92 EKHQRNELLPLLQDA  106 (116)
T ss_dssp             HHHHTTCHHHHHHHT
T ss_pred             HHHhCChHHHHHHHc
Confidence               556788888773

>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10

Probab=95.31  E-value=0.034  Score=46.59  Aligned_cols=94  Identities=13%  Similarity=0.180  Sum_probs=66.3

Q ss_pred             CCCcceEEEE-EeC-cchhhhHHHHHHHHHhccC-ceEEEEEecCCcc-------------------------cccchhh
Q 013976          167 SPIKNQLLLF-AVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNED-------------------------VGKPVSE  218 (432)
Q Consensus       167 ~~~~~~i~~~-~~~-~~~~~~~~~~~~~a~~~~~-~i~f~~vd~~~~~-------------------------~~~~l~~  218 (432)
                      .++..++.|| +.| +.|....+.+.+++.+|++ .+.++.|..+...                         ....+.+
T Consensus        30 ~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~  109 (192)
T 2h01_A           30 GKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIAR  109 (192)
T ss_dssp             TTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhHHhhCCccCCCcCeEECCcHHHHH
Confidence            3556677788 888 9999999999999999963 4788888765310                         0235678


Q ss_pred             hhCCC---CCCCcEEEEEeCCCCceecCCC----CCCHHHHHHHHHHHh
Q 013976          219 YFGIT---GEAPKVLAYTGNDDAKKHILDG----ELTLDKIKTFGEDFL  260 (432)
Q Consensus       219 ~~~i~---~~~~P~i~i~~~~~~~~y~~~~----~~~~~~i~~fi~~~~  260 (432)
                      .||+.   +...|++++++.++...+.+.|    ..+.+.+.+.++.+.
T Consensus       110 ~~gv~~~~g~~~P~~~liD~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~  158 (192)
T 2h01_A          110 SYDVLFNESVALRAFVLIDKQGVVQHLLVNNLALGRSVDEILRLIDALQ  158 (192)
T ss_dssp             HTTCEETTTEECCEEEEECTTSBEEEEEEGGGSSGGGHHHHHHHHHHHH
T ss_pred             HhCCcCcCCceeeEEEEEcCCCEEEEEEeCCCCCCCCHHHHHHHHHHHh
Confidence            88987   1124999999776644444433    246788888888765

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=95.25  E-value=0.039  Score=45.33  Aligned_cols=83  Identities=8%  Similarity=0.134  Sum_probs=59.6

Q ss_pred             cceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCc--------------------------------------
Q 013976          170 KNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNE--------------------------------------  210 (432)
Q Consensus       170 ~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~--------------------------------------  210 (432)
                      ..++.|+..+ +.|..+.+.+.++.+++.+ +.+.+.+..-.                                      
T Consensus        24 v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~-v~~~~~~~p~~~~~s~~aa~~~~~a~~~~~~~~~~~~lf~~~~~~~~~~  102 (175)
T 3gyk_A           24 VTVVEFFDYNCPYCRRAMAEVQGLVDADPN-VRLVYREWPILGEGSDFAARAALAARQQGKYEAFHWALMGMSGKANETG  102 (175)
T ss_dssp             EEEEEEECTTCHHHHHHHHHHHHHHHHCTT-EEEEEEECCCSCHHHHHHHHHHHHGGGGTCHHHHHHHHHTCSSCCSHHH
T ss_pred             EEEEEEECCCCccHHHHHHHHHHHHHhCCC-EEEEEEeCCCCCCChHHHHHHHHHHHHHhHHHHHHHHHHhcCCCCCHHH
Confidence            3456677777 9999999999999998766 77777664310                                      


Q ss_pred             ----------------------------ccccchhhhhCCCCCCCcEEEEEeCCCCceecCCCCCCHHHHHHHHHHHhc
Q 013976          211 ----------------------------DVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  261 (432)
Q Consensus       211 ----------------------------~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  261 (432)
                                                  .-...+.+.+|+.+.  |++++.  +  +  .+.|..+.+.+.+.|+..+.
T Consensus       103 l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~gt--Pt~~i~--g--~--~~~G~~~~~~l~~~i~~~l~  173 (175)
T 3gyk_A          103 VLRIAREVGLDTEQLQRDMEAPEVTAHIAQSMALAQKLGFNGT--PSFVVE--D--A--LVPGFVEQSQLQDAVDRARK  173 (175)
T ss_dssp             HHHHHHHTTCCHHHHHHHTTCHHHHHHHHHHHHHHHHHTCCSS--SEEEET--T--E--EECSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHcCCccC--CEEEEC--C--E--EeeCCCCHHHHHHHHHHHHh
Confidence                                        001234577899988  999762  2  2  45788899999999988653

>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.20  E-value=0.027  Score=42.56  Aligned_cols=53  Identities=19%  Similarity=0.154  Sum_probs=36.2

Q ss_pred             EEEEEeCCCChhhh------hhHHHHHHHHHHhcCCCCEEEEEEeCCCccc------ccC--------CCCCCceEEEEe
Q 013976          300 VLLEIYAPWCGHCQ------AFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------HRA--------KSDGFPTILFFP  359 (432)
Q Consensus       300 ~lv~f~~~~c~~c~------~~~~~~~~la~~~~~~~~~~~~~id~~~~~~------~~~--------~i~~~P~i~~~~  359 (432)
                      .+++|+.+||+.|+      .+...|.+.        ++.+..+|++.++.      ..+        +..++|.|  |-
T Consensus         9 ~V~vy~~~~C~~C~~~~~~~~ak~~L~~~--------gi~y~~vdI~~~~~~~~~l~~~~~~~~~~~~g~~tvP~v--fi   78 (111)
T 2ct6_A            9 VIRVFIASSSGFVAIKKKQQDVVRFLEAN--------KIEFEEVDITMSEEQRQWMYKNVPPEKKPTQGNPLPPQI--FN   78 (111)
T ss_dssp             CEEEEECSSCSCHHHHHHHHHHHHHHHHT--------TCCEEEEETTTCHHHHHHHHHSCCTTTCCSSSSCCSCEE--EE
T ss_pred             EEEEEEcCCCCCcccchhHHHHHHHHHHc--------CCCEEEEECCCCHHHHHHHHHHhcccccccCCCCCCCEE--EE
Confidence            47788999999999      566555543        57788889887643      122        55678876  44


Q ss_pred             CCC
Q 013976          360 AGN  362 (432)
Q Consensus       360 ~g~  362 (432)
                      +|.
T Consensus        79 ~g~   81 (111)
T 2ct6_A           79 GDR   81 (111)
T ss_dssp             TTE
T ss_pred             CCE
Confidence            553

>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13

Probab=95.09  E-value=0.045  Score=45.02  Aligned_cols=44  Identities=9%  Similarity=0.034  Sum_probs=34.9

Q ss_pred             CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCC
Q 013976          297 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT  340 (432)
Q Consensus       297 ~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~  340 (432)
                      .+..|+.|+..+|++|..+.+.+.++.+.+.+..++.+...+..
T Consensus        27 a~v~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~~~v~~~~~~~~   70 (175)
T 1z6m_A           27 APVKMIEFINVRCPYCRKWFEESEELLAQSVKSGKVERIIKLFD   70 (175)
T ss_dssp             CSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEECC
T ss_pred             CCeEEEEEECCCCcchHHHHHHHHHHHHHHhhCCcEEEEEEeCC
Confidence            35689999999999999999999999888822226777776653

>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A

Probab=95.09  E-value=0.019  Score=49.37  Aligned_cols=87  Identities=11%  Similarity=0.166  Sum_probs=58.7

Q ss_pred             cEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc------------------------------ccCC
Q 013976          299 DVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------------------------------HRAK  348 (432)
Q Consensus       299 ~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~------------------------------~~~~  348 (432)
                      .+|++|+++||..|....+.+.++...|++. ++.++.|.++....                              ..|+
T Consensus        34 vvL~f~~a~~cp~C~~el~~l~~l~~~f~~~-~v~vi~vS~D~~~~~~~~~~~i~~~~~~~~~~fpil~D~~~~va~~yg  112 (220)
T 1xcc_A           34 AILFSHPNDFTPVCTTELAELGKMHEDFLKL-NCKLIGFSCNSKESHDKWIEDIKYYGKLNKWEIPIVCDESRELANKLK  112 (220)
T ss_dssp             EEEECCSCTTCHHHHHHHHHHHHTHHHHHTT-TEEEEEEESSCHHHHHHHHHHHHHHHTCSCCCCCEEECTTSHHHHHHT
T ss_pred             EEEEEECCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCCHHHHHHHHHHHHHHhcCCCCcceeEECchhHHHHHhC
Confidence            4555568999999999999999999999863 68888887764210                              0124


Q ss_pred             CC------------CCceEEEEeCCCcccCcee-cc--CCCCHHHHHHHHHhcC
Q 013976          349 SD------------GFPTILFFPAGNKSFDPIN-VD--VDRTVVALYKFLKKNA  387 (432)
Q Consensus       349 i~------------~~P~i~~~~~g~~~~~~~~-y~--g~~~~~~l~~fi~~~~  387 (432)
                      +.            .+|+++++.....+ +... +.  ..++.+.|+..|+...
T Consensus       113 v~~~~~~~~~g~~~~~p~~flID~~G~I-~~~~~~~~~~g~~~~ell~~i~~lq  165 (220)
T 1xcc_A          113 IMDEQEKDITGLPLTCRCLFFISPEKKI-KATVLYPATTGRNAHEILRVLKSLQ  165 (220)
T ss_dssp             CEEEEEECTTSCEEECEEEEEECTTSBE-EEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             CCCcccccCCCCCcccceEEEECCCCEE-EEEEecCCCCCCCHHHHHHHHHHHH
Confidence            41            37899999444343 2222 21  2578899988887654

>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A

Probab=94.94  E-value=0.025  Score=41.11  Aligned_cols=52  Identities=13%  Similarity=0.068  Sum_probs=36.1

Q ss_pred             EEEEeCCCChhh------hhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc------ccCC--CCCCceEEEEeCCC
Q 013976          301 LLEIYAPWCGHC------QAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------HRAK--SDGFPTILFFPAGN  362 (432)
Q Consensus       301 lv~f~~~~c~~c------~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~------~~~~--i~~~P~i~~~~~g~  362 (432)
                      +++|+++||+.|      ..+...|.+.        ++.+..+|++.++.      ...+  ..++|.|.  -+|.
T Consensus         4 v~ly~~~~C~~c~~~~~~~~ak~~L~~~--------~i~~~~~di~~~~~~~~~l~~~~g~~~~~vP~if--i~g~   69 (93)
T 1t1v_A            4 LRVYSTSVTGSREIKSQQSEVTRILDGK--------RIQYQLVDISQDNALRDEMRTLAGNPKATPPQIV--NGNH   69 (93)
T ss_dssp             EEEEECSSCSCHHHHHHHHHHHHHHHHT--------TCCCEEEETTSCHHHHHHHHHHTTCTTCCSCEEE--ETTE
T ss_pred             EEEEEcCCCCCchhhHHHHHHHHHHHHC--------CCceEEEECCCCHHHHHHHHHHhCCCCCCCCEEE--ECCE
Confidence            677899999999      6766666543        46788889886643      1345  56899874  4553

>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}

Probab=94.91  E-value=0.038  Score=46.21  Aligned_cols=41  Identities=17%  Similarity=0.361  Sum_probs=35.3

Q ss_pred             CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeC
Q 013976          297 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG  339 (432)
Q Consensus       297 ~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~  339 (432)
                      .+..|+.|+.++|++|..+.+.+.++.+.+..  ++.+..+..
T Consensus        25 a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~--~v~~~~~p~   65 (193)
T 2rem_A           25 GKIEVVEIFGYTCPHCAHFDSKLQAWGARQAK--DVRFTLVPA   65 (193)
T ss_dssp             TCEEEEEEECTTCHHHHHHHHHHHHHHHTSCT--TEEEEEEEC
T ss_pred             CCeEEEEEECCCChhHhhhhHHHHHHHHhcCC--ceEEEEeCc
Confidence            45689999999999999999999999888865  688877776

>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A

Probab=94.90  E-value=0.022  Score=40.82  Aligned_cols=53  Identities=13%  Similarity=0.231  Sum_probs=36.2

Q ss_pred             EEEEeCC----CChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCC-----Cccc------ccCCCC-----CCceEEEEeC
Q 013976          301 LLEIYAP----WCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT-----TNEH------HRAKSD-----GFPTILFFPA  360 (432)
Q Consensus       301 lv~f~~~----~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~-----~~~~------~~~~i~-----~~P~i~~~~~  360 (432)
                      +++|+.+    ||+.|..+...|.+.        ++.+..+|++     .+..      ...+..     ++|++.+ .+
T Consensus         2 v~iY~~~~~~~~Cp~C~~ak~~L~~~--------gi~y~~idI~~~~~~~~~~~~~~l~~~~g~~~~~~~tvP~v~i-~~   72 (87)
T 1aba_A            2 FKVYGYDSNIHKCGPCDNAKRLLTVK--------KQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVFA-PD   72 (87)
T ss_dssp             EEEEECCTTTSCCHHHHHHHHHHHHT--------TCCEEEEESCSBTTBCCHHHHHHHHHHHTCSCCTTCCSCEEEC-TT
T ss_pred             EEEEEeCCCCCcCccHHHHHHHHHHc--------CCCEEEEEeeccccccCHHHHHHHHHHhCCCCCCCCccCEEEE-EC
Confidence            5678899    999999998887774        4667777877     3322      123555     8898654 34


Q ss_pred             CC
Q 013976          361 GN  362 (432)
Q Consensus       361 g~  362 (432)
                      |.
T Consensus        73 g~   74 (87)
T 1aba_A           73 GS   74 (87)
T ss_dssp             SC
T ss_pred             CE
Confidence            43

>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D

Probab=94.89  E-value=0.057  Score=46.46  Aligned_cols=93  Identities=13%  Similarity=0.166  Sum_probs=64.1

Q ss_pred             CCCcceEEEEE-eC-cchhhhHHHHHHHHHhccCc-eEEEEEecCCcc-------------------------cccchhh
Q 013976          167 SPIKNQLLLFA-VS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNED-------------------------VGKPVSE  218 (432)
Q Consensus       167 ~~~~~~i~~~~-~~-~~~~~~~~~~~~~a~~~~~~-i~f~~vd~~~~~-------------------------~~~~l~~  218 (432)
                      .+++++|.||+ .| +.|....+.+.+++++|+++ +.|+.|.++...                         ....+.+
T Consensus        68 ~Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~  147 (222)
T 3ztl_A           68 RGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSRNCQVIACSTDSQYSHLAWDNLDRKSGGLGHMKIPLLADRKQEISK  147 (222)
T ss_dssp             TTSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTSCCSCSSCEEECSSSHHHH
T ss_pred             CCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhhhhccccccceeEEeCCchHHHH
Confidence            45567777885 88 89999999999999999864 888888776421                         0234667


Q ss_pred             hhCCC----CCCCcEEEEEeCCCCceecCCC----CCCHHHHHHHHHHH
Q 013976          219 YFGIT----GEAPKVLAYTGNDDAKKHILDG----ELTLDKIKTFGEDF  259 (432)
Q Consensus       219 ~~~i~----~~~~P~i~i~~~~~~~~y~~~~----~~~~~~i~~fi~~~  259 (432)
                      .||+.    +...|+.++++.+....+.+.|    ....+.+.+.+...
T Consensus       148 ~ygv~~~~~g~~~P~~~lID~~G~I~~~~~g~~~~~~~~~~il~~l~~l  196 (222)
T 3ztl_A          148 AYGVFDEEDGNAFRGLFIIDPNGILRQITINDKPVGRSVDETLRLLDAF  196 (222)
T ss_dssp             HTTCBCTTTSSBCEEEEEECTTSEEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HcCCeecCCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            88886    1134988888776644444433    23567777777654

>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A

Probab=94.70  E-value=0.012  Score=46.21  Aligned_cols=54  Identities=22%  Similarity=0.296  Sum_probs=36.3

Q ss_pred             cEEEEEeC----CCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--c----cCCCCCCceEEEEeCCC
Q 013976          299 DVLLEIYA----PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--H----RAKSDGFPTILFFPAGN  362 (432)
Q Consensus       299 ~~lv~f~~----~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~----~~~i~~~P~i~~~~~g~  362 (432)
                      .++|+.++    +||+.|..+...|.++        ++.+..+|++.++.  .    ..+..++|.|  |-+|.
T Consensus        36 ~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~--------gv~y~~vdI~~d~~~~~~L~~~~G~~tvP~V--fI~G~   99 (135)
T 2wci_A           36 PILLYMKGSPKLPSCGFSAQAVQALAAC--------GERFAYVDILQNPDIRAELPKYANWPTFPQL--WVDGE   99 (135)
T ss_dssp             SEEEEESBCSSSBSSHHHHHHHHHHHTT--------CSCCEEEEGGGCHHHHHHHHHHHTCCSSCEE--EETTE
T ss_pred             CEEEEEEecCCCCCCccHHHHHHHHHHc--------CCceEEEECCCCHHHHHHHHHHHCCCCcCEE--EECCE
Confidence            45554443    8999999988887765        46677788876543  1    2366788876  44554

>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A

Probab=94.22  E-value=0.11  Score=41.96  Aligned_cols=92  Identities=9%  Similarity=-0.021  Sum_probs=59.4

Q ss_pred             CCcceEEEEE-eC-cchhhhHHHHHHHHHhccCc-eEEEEEecCCcc------------------cccchhhhhCCCCC-
Q 013976          168 PIKNQLLLFA-VS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNED------------------VGKPVSEYFGITGE-  225 (432)
Q Consensus       168 ~~~~~i~~~~-~~-~~~~~~~~~~~~~a~~~~~~-i~f~~vd~~~~~------------------~~~~l~~~~~i~~~-  225 (432)
                      +++.++.||. .| +.|....+.+.++.++|+++ +.++.|.++..+                  ....+.+.||+... 
T Consensus        35 gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~  114 (163)
T 3gkn_A           35 GHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKAGAKILGVSRDSVKSHDNFCAKQGFAFPLVSDGDEALCRAFDVIKEK  114 (163)
T ss_dssp             TSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHCCSSCEEECTTCHHHHHTTCEEEE
T ss_pred             CCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHhCCcccc
Confidence            4456677776 78 88999999999999999753 777777665321                  12345566776541 


Q ss_pred             ---------CCcEEEEEeCCCCceecCCCC---CCHHHHHHHHHHH
Q 013976          226 ---------APKVLAYTGNDDAKKHILDGE---LTLDKIKTFGEDF  259 (432)
Q Consensus       226 ---------~~P~i~i~~~~~~~~y~~~~~---~~~~~i~~fi~~~  259 (432)
                               ..|+.++++.++...+.+.+.   ...+.+.+.++..
T Consensus       115 ~~~~~~~~~~~p~~~lid~~G~i~~~~~~~~~~~~~~~il~~l~~l  160 (163)
T 3gkn_A          115 NMYGKQVLGIERSTFLLSPEGQVVQAWRKVKVAGHADAVLAALKAH  160 (163)
T ss_dssp             EETTEEEEEECCEEEEECTTSCEEEEECSCCSTTHHHHHHHHHHHH
T ss_pred             ccccccccCcceEEEEECCCCeEEEEEcCCCcccCHHHHHHHHHHH
Confidence                     048888887766555444332   3345666666654

>3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA, thiol-disulfide oxidoreductase, DISU bond, redox-active center; 1.58A {Salmonella enterica subsp} SCOP: c.47.1.13 PDB: 1a23_A 1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A 1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A* 3e9j_B* 1ac1_A 2b6m_A 2b3s_A

Probab=94.09  E-value=0.035  Score=46.57  Aligned_cols=42  Identities=24%  Similarity=0.506  Sum_probs=34.1

Q ss_pred             CCcEEEEEeCCCChhhhhhHHHH---HHHHHHhcCCCCEEEEEEeCC
Q 013976          297 SKDVLLEIYAPWCGHCQAFEPTY---NKLAKHLRGVDSIVIAKMDGT  340 (432)
Q Consensus       297 ~~~~lv~f~~~~c~~c~~~~~~~---~~la~~~~~~~~~~~~~id~~  340 (432)
                      .++.||.|+..||++|..+.+.+   .++.+.+.+  ++.|..++..
T Consensus        21 ~~~~vvef~d~~Cp~C~~~~~~l~~~~~l~~~~~~--~v~~~~~~~~   65 (191)
T 3l9s_A           21 GEPQVLEFFSFYCPHCYQFEEVLHVSDNVKKKLPE--GTKMTKYHVE   65 (191)
T ss_dssp             SSSCEEEEECTTCHHHHHHHHTSCHHHHHHHHSCT--TCCEEEEECS
T ss_pred             CCCeEEEEECCCChhHHHhChhccchHHHHHhCCC--CcEEEEEecc
Confidence            37899999999999999999986   689999876  4666665543

>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}

Probab=94.09  E-value=0.027  Score=42.61  Aligned_cols=53  Identities=17%  Similarity=0.343  Sum_probs=36.3

Q ss_pred             EEEEEeC-----CCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--c----cCCCCCCceEEEEeCCC
Q 013976          300 VLLEIYA-----PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--H----RAKSDGFPTILFFPAGN  362 (432)
Q Consensus       300 ~lv~f~~-----~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~----~~~i~~~P~i~~~~~g~  362 (432)
                      -+|+|..     +||+.|......|.+.        ++.+..+|++.++.  .    ..+..++|.+.  -+|.
T Consensus        17 ~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~--------gi~y~~~di~~d~~~~~~l~~~~g~~tvP~if--i~g~   80 (111)
T 3zyw_A           17 PCMLFMKGTPQEPRCGFSKQMVEILHKH--------NIQFSSFDIFSDEEVRQGLKAYSSWPTYPQLY--VSGE   80 (111)
T ss_dssp             SEEEEESBCSSSBSSHHHHHHHHHHHHT--------TCCCEEEEGGGCHHHHHHHHHHHTCCSSCEEE--ETTE
T ss_pred             CEEEEEecCCCCCcchhHHHHHHHHHHc--------CCCeEEEECcCCHHHHHHHHHHHCCCCCCEEE--ECCE
Confidence            3456777     9999999998888765        45667778776543  1    12567889874  4553

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=94.02  E-value=0.058  Score=46.19  Aligned_cols=83  Identities=11%  Similarity=0.195  Sum_probs=57.1

Q ss_pred             CCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCC-------------------------------------
Q 013976          168 PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDN-------------------------------------  209 (432)
Q Consensus       168 ~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~-------------------------------------  209 (432)
                      ++..+++|+.+| +.|+.+.+.+.+++..   .+.+.++...-                                     
T Consensus        86 ~k~~vv~F~d~~Cp~C~~~~~~l~~l~~~---~v~v~~~~~p~~~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~~~~  162 (216)
T 1eej_A           86 EKHVITVFTDITCGYCHKLHEQMADYNAL---GITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVAPAS  162 (216)
T ss_dssp             CCEEEEEEECTTCHHHHHHHTTHHHHHHT---TEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCCCCC
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHhC---CcEEEEEECCccCCCchHHHHHHHHHhccCHHHHHHHHHhCCCCChhH
Confidence            345567788888 9999999999998764   36665553210                                     


Q ss_pred             ---c-ccccchhhhhCCCCCCCcEEEEEeCCCCceecCCCCCCHHHHHHHHHHHh
Q 013976          210 ---E-DVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFL  260 (432)
Q Consensus       210 ---~-~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~  260 (432)
                         . +-+..+.+.+|+++.  |++++. ++  .  .+.|..+.+.|.++++...
T Consensus       163 ~~~~v~~~~~l~~~~gV~gt--Pt~v~~-dG--~--~~~G~~~~~~l~~~l~~~~  210 (216)
T 1eej_A          163 CDVDIADHYALGVQLGVSGT--PAVVLS-NG--T--LVPGYQPPKEMKEFLDEHQ  210 (216)
T ss_dssp             CSCCHHHHHHHHHHHTCCSS--SEEECT-TS--C--EEESCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCcc--CEEEEc-CC--e--EecCCCCHHHHHHHHHHhh
Confidence               0 002346688999998  999543 22  2  4468789999999998764

>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1

Probab=93.47  E-value=0.14  Score=43.53  Aligned_cols=81  Identities=12%  Similarity=0.204  Sum_probs=55.6

Q ss_pred             CCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCc------------------------------------
Q 013976          168 PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNE------------------------------------  210 (432)
Q Consensus       168 ~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~------------------------------------  210 (432)
                      ++..+++|+.+| +.|+.+.+.+.+++..  + +.+.++...-.                                    
T Consensus        86 ~k~~vv~F~d~~Cp~C~~~~~~l~~~~~~--~-v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~~~~~~~~~~~~  162 (211)
T 1t3b_A           86 EKHVVTVFMDITCHYCHLLHQQLKEYNDL--G-ITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPKEVK  162 (211)
T ss_dssp             CSEEEEEEECTTCHHHHHHHTTHHHHHHT--T-EEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCSSCC
T ss_pred             CCEEEEEEECCCCHhHHHHHHHHHHHHhC--C-cEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHHHHcCCCCChHH
Confidence            334566777888 9999999999997663  3 66655433210                                    


Q ss_pred             -----ccccchhhhhCCCCCCCcEEEEEeCCCCceecCCCCCCHHHHHHHHHH
Q 013976          211 -----DVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGED  258 (432)
Q Consensus       211 -----~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~  258 (432)
                           +-+..+.+.+|+++.  |++++ .++  +  .+.|..+.+.|.++++.
T Consensus       163 ~~~~v~~~~~l~~~~gV~gT--Pt~vi-~nG--~--~~~G~~~~~~l~~~l~~  208 (211)
T 1t3b_A          163 TPNIVKKHYELGIQFGVRGT--PSIVT-STG--E--LIGGYLKPADLLRALEE  208 (211)
T ss_dssp             CSSHHHHHHHHHHHHTCCSS--CEEEC-TTS--C--CCCSCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCcC--CEEEE-eCC--E--EecCCCCHHHHHHHHHh
Confidence                 002345678999998  99976 333  2  45688899999999876

>2axo_A Hypothetical protein ATU2684; alpha beta protein., structural genomics, PSI, protein struc initiative; 1.80A {Agrobacterium tumefaciens str} SCOP: c.47.1.19

Probab=93.35  E-value=0.47  Score=41.69  Aligned_cols=80  Identities=15%  Similarity=0.181  Sum_probs=53.4

Q ss_pred             CcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCcc-------------------c-ccCCCCCC--ceE
Q 013976          298 KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE-------------------H-HRAKSDGF--PTI  355 (432)
Q Consensus       298 ~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~-------------------~-~~~~i~~~--P~i  355 (432)
                      ...+.+|++++|++|......+.+++..+    ++....++++..+                   . ..++..++  |.+
T Consensus        43 ~~~VelyTs~gCp~C~~Ak~lL~~~~~~~----~vi~l~~~v~~~dylgw~D~~a~~~~~~r~~~~~~~~G~~tVyTPqI  118 (270)
T 2axo_A           43 KGVVELFTSQGCASCPPADEALRKMIQKG----DVVGLSYHVDYWNYLGWTDSLASKENTERQYGYMRALGRNGVYTPQA  118 (270)
T ss_dssp             CCEEEEEECTTCTTCHHHHHHHHHHHHHT----SSEEEEEECSTTCSSSSCCTTCCHHHHHHHHHHHHHTTCSCCCSSEE
T ss_pred             CcEEEEEeCCCCCChHHHHHHHHHhhccC----CeeeEEEEEEEecccccccchhhhhhhHHHHHHHHHhCCCcccCCEE
Confidence            35788999999999999999999998764    3433333433222                   1 24577888  987


Q ss_pred             EEEeCCCcccCceeccCCCCHHHHHHHHHhcCCC
Q 013976          356 LFFPAGNKSFDPINVDVDRTVVALYKFLKKNASI  389 (432)
Q Consensus       356 ~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~  389 (432)
                      ++  +|..      ..++.+.+.|.+.|.+....
T Consensus       119 ~I--ng~~------~v~G~d~~~l~~~l~~~~~~  144 (270)
T 2axo_A          119 IL--NGRD------HVKGADVRGIYDRLDAFKRE  144 (270)
T ss_dssp             EE--TTTE------EEETTCHHHHHHHHHHHHHT
T ss_pred             EE--CCEE------eecCCCHHHHHHHHHHhhcc
Confidence            66  5542      23345678888888765443

>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A

Probab=93.27  E-value=0.049  Score=40.93  Aligned_cols=46  Identities=20%  Similarity=0.442  Sum_probs=32.1

Q ss_pred             CCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--c----cCCCCCCceEEEEeCCC
Q 013976          307 PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--H----RAKSDGFPTILFFPAGN  362 (432)
Q Consensus       307 ~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~----~~~i~~~P~i~~~~~g~  362 (432)
                      |||+.|+.....|.+.        ++.+..+|++.++.  .    ..+..++|.+  |-+|.
T Consensus        31 p~Cp~C~~ak~~L~~~--------gi~~~~~dI~~~~~~~~~l~~~~g~~tvP~i--fi~g~   82 (109)
T 3ipz_A           31 PMCGFSNTVVQILKNL--------NVPFEDVNILENEMLRQGLKEYSNWPTFPQL--YIGGE   82 (109)
T ss_dssp             BSSHHHHHHHHHHHHT--------TCCCEEEEGGGCHHHHHHHHHHHTCSSSCEE--EETTE
T ss_pred             CCChhHHHHHHHHHHc--------CCCcEEEECCCCHHHHHHHHHHHCCCCCCeE--EECCE
Confidence            5999999998888875        45667778765544  1    2267789965  44554

>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13

Probab=93.27  E-value=0.14  Score=43.12  Aligned_cols=42  Identities=10%  Similarity=0.108  Sum_probs=37.7

Q ss_pred             CCcceEEEEEeC-cchhhhHHHH---HHHHHhccCceEEEEEecCC
Q 013976          168 PIKNQLLLFAVS-NDSEKLLPVF---EEAAKSFKGKLIFVYVQMDN  209 (432)
Q Consensus       168 ~~~~~i~~~~~~-~~~~~~~~~~---~~~a~~~~~~i~f~~vd~~~  209 (432)
                      .++.++.||..| ++|..+.+.+   .++++++.+++.|..++...
T Consensus       113 ~~~~vveFf~~~C~~C~~~~p~~~~~~~l~~~~~~~v~~~~~~v~~  158 (197)
T 1un2_A          113 GAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVNF  158 (197)
T ss_dssp             TCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCTTCCEEEEECSS
T ss_pred             CCCEEEEEECCCChhHHHhCcccccHHHHHHHCCCCCEEEEeccCc
Confidence            446788899999 9999999998   99999999899999999875

>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae}

Probab=93.27  E-value=0.044  Score=42.50  Aligned_cols=95  Identities=11%  Similarity=0.075  Sum_probs=51.3

Q ss_pred             ccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCcc--c---c----cCCCCCCceEEE
Q 013976          287 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--H---H----RAKSDGFPTILF  357 (432)
Q Consensus       287 ~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~--~---~----~~~i~~~P~i~~  357 (432)
                      .+|++.+ +. .+ +++|..+||+.|..+...|.+.   ..-  ++.+..+|++..+  .   .    ..+..++|.|. 
T Consensus         5 ~~~~~ii-~~-~~-Vvvysk~~Cp~C~~ak~lL~~~---~~~--~v~~~~idid~~~d~~~~~~~l~~~~G~~tVP~If-   75 (127)
T 3l4n_A            5 KEYSLIL-DL-SP-IIIFSKSTCSYSKGMKELLENE---YQF--IPNYYIIELDKHGHGEELQEYIKLVTGRGTVPNLL-   75 (127)
T ss_dssp             HHHHHHH-TS-CS-EEEEECTTCHHHHHHHHHHHHH---EEE--ESCCEEEEGGGSTTHHHHHHHHHHHHSCCSSCEEE-
T ss_pred             HHHHHHH-cc-CC-EEEEEcCCCccHHHHHHHHHHh---ccc--CCCcEEEEecCCCCHHHHHHHHHHHcCCCCcceEE-
Confidence            3456654 22 23 7889999999999998887774   111  1233444544332  1   1    13667899984 


Q ss_pred             EeCCCcccCceeccC---CCCHHHHHHHHHhcCCCCCccc
Q 013976          358 FPAGNKSFDPINVDV---DRTVVALYKFLKKNASIPFKIQ  394 (432)
Q Consensus       358 ~~~g~~~~~~~~y~g---~~~~~~l~~fi~~~~~~~~~~~  394 (432)
                       -+|..+.   .++.   ......|...|+..+...+.+.
T Consensus        76 -I~G~~IG---G~ddl~~l~~~G~L~~lL~~~g~~~~~~~  111 (127)
T 3l4n_A           76 -VNGVSRG---GNEEIKKLHTQGKLLESLQVWSDGKFSVE  111 (127)
T ss_dssp             -ETTEECC---CHHHHHHHHHTTCHHHHHHHTCTTSCEEE
T ss_pred             -ECCEEEc---CHHHHHHHHHCCCHHHHHHHhcCCcEEEE
Confidence             4554331   1111   1112345556666666555443

>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}

Probab=92.70  E-value=0.14  Score=39.31  Aligned_cols=55  Identities=15%  Similarity=0.211  Sum_probs=35.8

Q ss_pred             CcEEEEEeC----CCChhhhhhHHHHHHHHHHhcCCCCEE---EEEEeCCCccc--c----cCCCCCCceEEEEeCCC
Q 013976          298 KDVLLEIYA----PWCGHCQAFEPTYNKLAKHLRGVDSIV---IAKMDGTTNEH--H----RAKSDGFPTILFFPAGN  362 (432)
Q Consensus       298 ~~~lv~f~~----~~c~~c~~~~~~~~~la~~~~~~~~~~---~~~id~~~~~~--~----~~~i~~~P~i~~~~~g~  362 (432)
                      .+++|+-.+    |||++|..+...|.++        ++.   +..+|+..+..  .    ..+..++|.|  |-+|.
T Consensus        16 ~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~--------gv~~~~~~~~dv~~~~~~~~~l~~~sg~~tvP~v--fI~g~   83 (121)
T 3gx8_A           16 APVVLFMKGTPEFPKCGFSRATIGLLGNQ--------GVDPAKFAAYNVLEDPELREGIKEFSEWPTIPQL--YVNKE   83 (121)
T ss_dssp             CSEEEEESBCSSSBCTTHHHHHHHHHHHH--------TBCGGGEEEEECTTCHHHHHHHHHHHTCCSSCEE--EETTE
T ss_pred             CCEEEEEeccCCCCCCccHHHHHHHHHHc--------CCCcceEEEEEecCCHHHHHHHHHHhCCCCCCeE--EECCE
Confidence            344444443    5999999999888886        344   66778776544  1    2356788887  44554

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=92.65  E-value=0.14  Score=44.64  Aligned_cols=86  Identities=8%  Similarity=0.023  Sum_probs=57.7

Q ss_pred             ceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCc---------------------------------------
Q 013976          171 NQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNE---------------------------------------  210 (432)
Q Consensus       171 ~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~---------------------------------------  210 (432)
                      .+++|+.++ +.|+++.+.+.++...  +++.|.++...-.                                       
T Consensus       100 ~v~~F~D~~Cp~C~~~~~~l~~~~~~--g~v~v~~~~~p~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~~l~~~~~~  177 (241)
T 1v58_A          100 IVYVFADPFCPYCKQFWQQARPWVDS--GKVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLKLNVPANV  177 (241)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHT--TSEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCCCCCCSSC
T ss_pred             EEEEEECCCChhHHHHHHHHHHHHhC--CcEEEEEEECCcCCCcHHHHHHHHHHccCHHHHHHHHHHHhccCCCCccccC
Confidence            355566677 8999999999887775  5688777654210                                       


Q ss_pred             --------ccccchhhhhCCCCCCCcEEEEEeCCCCceecCCCCCCHHHHHHHHHHHhc
Q 013976          211 --------DVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  261 (432)
Q Consensus       211 --------~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  261 (432)
                              +-+..+.+.+|+++.  |++++.+.+ +......|..+.+.|.++++..+.
T Consensus       178 ~~~~~~~v~~~~~l~~~~gv~gt--Pt~vi~~~~-G~~~~~~G~~~~~~L~~~l~~~~~  233 (241)
T 1v58_A          178 STEQMKVLSDNEKLMDDLGANVT--PAIYYMSKE-NTLQQAVGLPDQKTLNIIMGNKLQ  233 (241)
T ss_dssp             CHHHHHHHHHHHHHHHHHTCCSS--CEEEEEETT-TEEEEEESSCCHHHHHHHTTC---
T ss_pred             CHHHHHHHHHHHHHHHHcCCCCC--CEEEEECCC-CCEEEecCCCCHHHHHHHHHHHHH
Confidence                    001234578899988  999887532 333356788899999998887553

>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A

Probab=92.65  E-value=0.32  Score=39.75  Aligned_cols=92  Identities=14%  Similarity=0.073  Sum_probs=57.8

Q ss_pred             CCCcceEEEEEeC--cchhhhHHHHHHHHHhccCceEEEEEecCCcc-------------------cccchhhhhCCCCC
Q 013976          167 SPIKNQLLLFAVS--NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED-------------------VGKPVSEYFGITGE  225 (432)
Q Consensus       167 ~~~~~~i~~~~~~--~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~-------------------~~~~l~~~~~i~~~  225 (432)
                      .+++.++.||+.|  +.|....+.+.+++++  ..+.|+.|+.+...                   ....+.+.||+...
T Consensus        43 ~gk~vvl~F~~t~~C~~C~~~~~~l~~l~~~--~~v~vv~Is~D~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~  120 (175)
T 1xvq_A           43 RGKSVLLNIFPSVDTPVCATSVRTFDERAAA--SGATVLCVSKDLPFAQKRFCGAEGTENVMPASAFRDSFGEDYGVTIA  120 (175)
T ss_dssp             TTSCEEEEECSCCCSSCCCHHHHHHHHHHHH--TTCEEEEEESSCHHHHTTCC------CEEEEECTTSSHHHHTTCBBC
T ss_pred             CCCEEEEEEEeCCCCchHHHHHHHHHHHHhh--cCCEEEEEECCCHHHHHHHHHHcCCCCceEeeCCHHHHHHHhCCccc
Confidence            3556677788777  7899999999999998  45888888775211                   02456778887543


Q ss_pred             C-------CcEEEEEeCCCCceecCCC-CC-CHHHHHHHHHHHh
Q 013976          226 A-------PKVLAYTGNDDAKKHILDG-EL-TLDKIKTFGEDFL  260 (432)
Q Consensus       226 ~-------~P~i~i~~~~~~~~y~~~~-~~-~~~~i~~fi~~~~  260 (432)
                      .       .|+.++++.++...+.+.| .. ....+.+.++.+.
T Consensus       121 ~~~~~g~~~p~~~lid~~G~I~~~~~g~~~~~~~~~~~~l~~l~  164 (175)
T 1xvq_A          121 DGPMAGLLARAIVVIGADGNVAYTELVPEIAQEPNYEAALAALG  164 (175)
T ss_dssp             SSTTTTSBCSEEEEECTTSBEEEEEECSBTTCCCCHHHHHHHHH
T ss_pred             ccccCCcccceEEEECCCCeEEEEEECCCcCCCCCHHHHHHHHH
Confidence            1       2777777765544444432 22 3334555555443

>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}

Probab=92.62  E-value=0.49  Score=40.30  Aligned_cols=41  Identities=10%  Similarity=0.047  Sum_probs=33.2

Q ss_pred             CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCc-eEEEEEecC
Q 013976          167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMD  208 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~-i~f~~vd~~  208 (432)
                      .++.++|.|++.| +.|. ..+.|.++.++|.++ +.++.+.++
T Consensus        55 ~GKvvll~FwAt~C~~c~-e~p~L~~l~~~~~~~g~~Vlgvs~d   97 (215)
T 2i3y_A           55 VGKHILFVNVATYCGLTA-QYPELNALQEELKPYGLVVLGFPCN   97 (215)
T ss_dssp             TTSEEEEEEECSSSGGGG-GHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             CCCEEEEEEeCCCCCChH-hHHHHHHHHHHhccCCeEEEEEEcc
Confidence            4567788888999 8898 788999999999754 888888765

>4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia}

Probab=92.36  E-value=0.15  Score=41.85  Aligned_cols=43  Identities=23%  Similarity=0.357  Sum_probs=33.5

Q ss_pred             CcEEEEEeCCCChhhhh-hHHHHHHHHHHhcCCCCE-EEEEEeCCC
Q 013976          298 KDVLLEIYAPWCGHCQA-FEPTYNKLAKHLRGVDSI-VIAKMDGTT  341 (432)
Q Consensus       298 ~~~lv~f~~~~c~~c~~-~~~~~~~la~~~~~~~~~-~~~~id~~~  341 (432)
                      ..+|++|++.||+.|.. -.+.|.+++..|+.. ++ .++-|.++.
T Consensus        49 ~vVL~fyP~~~tp~Ct~~El~~f~~~~~ef~~~-g~d~VigIS~D~   93 (176)
T 4f82_A           49 RVVIFGLPGAFTPTCSAQHVPGYVEHAEQLRAA-GIDEIWCVSVND   93 (176)
T ss_dssp             EEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHT-TCCEEEEEESSC
T ss_pred             eEEEEEEcCCCCCCCCHHHHHHHHHHHHHHHhC-CCCEEEEEeCCC
Confidence            35677888999999998 899999999999753 45 666666654

>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}

Probab=91.87  E-value=0.11  Score=44.54  Aligned_cols=89  Identities=10%  Similarity=0.007  Sum_probs=55.0

Q ss_pred             CCcEEEEEeCCC-Chhhh-----hhHHHHHHHHHHhcCCCCEEEEEEeCCCcc----------------------c---c
Q 013976          297 SKDVLLEIYAPW-CGHCQ-----AFEPTYNKLAKHLRGVDSIVIAKMDGTTNE----------------------H---H  345 (432)
Q Consensus       297 ~~~~lv~f~~~~-c~~c~-----~~~~~~~~la~~~~~~~~~~~~~id~~~~~----------------------~---~  345 (432)
                      ++.+||+||+.| |+.|.     ...+.|.++   +.   ++.++-|+++...                      .   .
T Consensus        48 Gk~vVL~F~ps~~cp~C~~~~~~~El~~~~~~---~~---gv~VvgIS~Ds~~~~~~f~~~~gl~~fplLsD~~~~~vak  121 (224)
T 3keb_A           48 HTPKLIVTLLSVDEDEHAGLLLLRETRRFLDS---WP---HLKLIVITVDSPSSLARARHEHGLPNIALLSTLRGRDFHK  121 (224)
T ss_dssp             TCCEEEEECSCTTCSTTTSHHHHHHHHHHHTT---CT---TSEEEEEESSCHHHHHHHHHHHCCTTCEEEESTTCTTHHH
T ss_pred             CCcEEEEEEeCCCCCCCCCCccHHHHHHHHHH---cC---CCEEEEEECCCHHHHHHHHHHcCCCCceEEEcCCchHHHH
Confidence            578999999888 99999     666666666   42   4666666655310                      0   2


Q ss_pred             cCCCCC---------CceEEEEe-CCCcccCc--eeccCCCCHHHHHHHHHhcCCCCC
Q 013976          346 RAKSDG---------FPTILFFP-AGNKSFDP--INVDVDRTVVALYKFLKKNASIPF  391 (432)
Q Consensus       346 ~~~i~~---------~P~i~~~~-~g~~~~~~--~~y~g~~~~~~l~~fi~~~~~~~~  391 (432)
                      .|++..         .|+.+++. +|.....-  ..+.+..+.+.+++.|+.......
T Consensus       122 ~yGv~~~~~~~~G~~~p~tfvID~dG~I~~~~~~~~~~~~pd~~evl~~L~~l~~~~~  179 (224)
T 3keb_A          122 RYGVLITEYPLSGYTSPAIILADAANVVHYSERLANTRDFFDFDAIEKLLQEGEQQAM  179 (224)
T ss_dssp             HTTCBCCSTTSTTCBCCEEEEECTTCBEEEEEECSBTTCCCCHHHHHHHHHHHHHHC-
T ss_pred             HhCCccccccccCCccCEEEEEcCCCEEEEEEecCCCCCCCCHHHHHHHHHHhhhccc
Confidence            344443         69999995 55432100  112346778889888887654333

>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}

Probab=91.73  E-value=0.6  Score=39.44  Aligned_cols=41  Identities=5%  Similarity=-0.084  Sum_probs=32.5

Q ss_pred             CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCc-eEEEEEecC
Q 013976          167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMD  208 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~-i~f~~vd~~  208 (432)
                      .++.++|.|++.| +.| ...+.|.++.++|.++ +.++.+.++
T Consensus        37 kGKvvll~F~At~C~~c-~e~p~L~~l~~~~~~~g~~vlgvs~d   79 (207)
T 2r37_A           37 AGKYVLFVNVASYGGLT-GQYIELNALQEELAPFGLVILGFPCN   79 (207)
T ss_dssp             TTSEEEEEEECSSSTTT-THHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             CCCEEEEEEeCCCCCCh-HHHHHHHHHHHHhccCCEEEEEEECc
Confidence            4557778888999 889 5778999999999864 777777754

>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}

Probab=91.58  E-value=0.38  Score=39.52  Aligned_cols=92  Identities=10%  Similarity=-0.017  Sum_probs=56.6

Q ss_pred             CCcceEEEE-EeC-cchhhhHHHHHHHHHhccCc-eEEEEEecCCccc------------------ccchhhhhCCCCC-
Q 013976          168 PIKNQLLLF-AVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNEDV------------------GKPVSEYFGITGE-  225 (432)
Q Consensus       168 ~~~~~i~~~-~~~-~~~~~~~~~~~~~a~~~~~~-i~f~~vd~~~~~~------------------~~~l~~~~~i~~~-  225 (432)
                      +++.+++|| +.| +.|....+.+.++.++|+++ +.++.|.++..+.                  ...+.+.||+... 
T Consensus        51 Gk~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~~~~~vv~Vs~D~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~~~  130 (179)
T 3ixr_A           51 NQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQINATVLGVSRDSVKSHDSFCAKQGFTFPLVSDSDAILCKAFDVIKEK  130 (179)
T ss_dssp             TSEEEEEECSCTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTCHHHHHTTCEEEE
T ss_pred             CCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCceEEEECCchHHHHHcCCcccc
Confidence            445566666 677 78999999999999999763 6666665554221                  2344556666321 


Q ss_pred             ---------CCcEEEEEeCCCCceecCCC---CCCHHHHHHHHHHH
Q 013976          226 ---------APKVLAYTGNDDAKKHILDG---ELTLDKIKTFGEDF  259 (432)
Q Consensus       226 ---------~~P~i~i~~~~~~~~y~~~~---~~~~~~i~~fi~~~  259 (432)
                               ..|+.++++.+....+.+.+   ..+.+.+.+.++.+
T Consensus       131 ~~~g~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~il~~l~~l  176 (179)
T 3ixr_A          131 TMYGRQVIGIERSTFLIGPTHRIVEAWRQVKVPGHAEEVLNKLKAH  176 (179)
T ss_dssp             CCC--CEEEECCEEEEECTTSBEEEEECSCCSTTHHHHHHHHHHHH
T ss_pred             cccCcccCCcceEEEEECCCCEEEEEEcCCCCCCCHHHHHHHHHHH
Confidence                     13777777766544444433   23455666666554

>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A

Probab=91.50  E-value=0.22  Score=37.94  Aligned_cols=37  Identities=19%  Similarity=0.070  Sum_probs=26.1

Q ss_pred             EEEEEeCCCChhhh------hhHHHHHHHHHHhcCCCCEEEEEEeCCCccc
Q 013976          300 VLLEIYAPWCGHCQ------AFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH  344 (432)
Q Consensus       300 ~lv~f~~~~c~~c~------~~~~~~~~la~~~~~~~~~~~~~id~~~~~~  344 (432)
                      ++++|++++|+.|+      .+...|...        ++.|-.+|++.++.
T Consensus         1 ~V~vYtt~~c~~c~~kk~c~~aK~lL~~k--------gV~feEidI~~d~~   43 (121)
T 1u6t_A            1 VIRVYIASSSGSTAIKKKQQDVLGFLEAN--------KIGFEEKDIAANEE   43 (121)
T ss_dssp             CEEEEECTTCSCHHHHHHHHHHHHHHHHT--------TCCEEEEECTTCHH
T ss_pred             CEEEEecCCCCCccchHHHHHHHHHHHHC--------CCceEEEECCCCHH
Confidence            47889999999994      333333322        68899999987644

>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}

Probab=91.34  E-value=0.45  Score=40.42  Aligned_cols=44  Identities=11%  Similarity=0.051  Sum_probs=37.6

Q ss_pred             CCcEEEEEe-CCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCC
Q 013976          297 SKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT  341 (432)
Q Consensus       297 ~~~~lv~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~  341 (432)
                      ++.+|++|| +.||..|..-...|.++...|+.. ++.+.-|.++.
T Consensus        52 GK~vVL~FyP~d~TpvCt~E~~~f~~~~~~f~~~-g~~vigiS~Ds   96 (216)
T 3sbc_A           52 GKYVVLAFIPLAFTFVSPTEIIAFSEAAKKFEEQ-GAQVLFASTDS   96 (216)
T ss_dssp             TSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHHT-TEEEEEEESSC
T ss_pred             CCeEEEEEEcCCCCCcCchhhhHHHHhHHhhccC-CceEEEeecCc
Confidence            578888999 899999999999999999999864 67888788764

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1

Probab=91.13  E-value=0.3  Score=33.19  Aligned_cols=71  Identities=13%  Similarity=0.145  Sum_probs=45.5

Q ss_pred             eEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCceecCCCCCCHH
Q 013976          172 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLD  250 (432)
Q Consensus       172 ~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~~~~~  250 (432)
                      +++|+.+| +.|+...+.++++      .+.|..+|.+........++.+|+...  |++++  ++  ..   -+..+.+
T Consensus         3 i~~y~~~~C~~C~~~~~~l~~~------~i~~~~~di~~~~~~~~~~~~~~~~~v--P~l~~--~g--~~---~~g~~~~   67 (75)
T 1r7h_A            3 ITLYTKPACVQCTATKKALDRA------GLAYNTVDISLDDEARDYVMALGYVQA--PVVEV--DG--EH---WSGFRPE   67 (75)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT------TCCCEEEETTTCHHHHHHHHHTTCBCC--CEEEE--TT--EE---EESCCHH
T ss_pred             EEEEeCCCChHHHHHHHHHHHc------CCCcEEEECCCCHHHHHHHHHcCCCcc--CEEEE--CC--eE---EcCCCHH
Confidence            45666777 8999998887764      266778888763211122236787766  99864  22  22   2346788


Q ss_pred             HHHHHHH
Q 013976          251 KIKTFGE  257 (432)
Q Consensus       251 ~i~~fi~  257 (432)
                      .|.++++
T Consensus        68 ~l~~~l~   74 (75)
T 1r7h_A           68 RIKQLQA   74 (75)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHHh
Confidence            8888763

>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} PDB: 3l9u_A

Probab=91.07  E-value=0.32  Score=40.39  Aligned_cols=42  Identities=7%  Similarity=0.379  Sum_probs=34.0

Q ss_pred             CCcEEEEEeCCCChhhhhhHHHH-HHHHHHhcCCCCEEEEEEeCC
Q 013976          297 SKDVLLEIYAPWCGHCQAFEPTY-NKLAKHLRGVDSIVIAKMDGT  340 (432)
Q Consensus       297 ~~~~lv~f~~~~c~~c~~~~~~~-~~la~~~~~~~~~~~~~id~~  340 (432)
                      .+.++|.|+..+|++|..+.+.+ .++.+.+..  ++.+..+...
T Consensus        17 ~~~~~ief~d~~CP~C~~~~~~l~~~l~~~~~~--~v~~~~~~l~   59 (195)
T 3c7m_A           17 ADKTLIKVFSYACPFCYKYDKAVTGPVSEKVKD--IVAFTPFHLE   59 (195)
T ss_dssp             CTTEEEEEECTTCHHHHHHHHHTHHHHHHHTTT--TCEEEEEECT
T ss_pred             CCcEEEEEEeCcCcchhhCcHHHHHHHHHhCCC--ceEEEEEecC
Confidence            45688889999999999999999 999988875  4666666544

>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}

Probab=91.04  E-value=0.58  Score=40.01  Aligned_cols=95  Identities=12%  Similarity=0.124  Sum_probs=62.8

Q ss_pred             CCCcceEEEE-EeC-cchhhhHHHHHHHHHhccC-ceEEEEEecCCccc-------------------------ccchhh
Q 013976          167 SPIKNQLLLF-AVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNEDV-------------------------GKPVSE  218 (432)
Q Consensus       167 ~~~~~~i~~~-~~~-~~~~~~~~~~~~~a~~~~~-~i~f~~vd~~~~~~-------------------------~~~l~~  218 (432)
                      .+++++|.|| +.| +.|....+.|.++.++|++ .+.++.|..+....                         ...+.+
T Consensus        55 ~Gk~vvl~F~patwCp~C~~e~p~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~  134 (221)
T 2c0d_A           55 GQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFENKNVELLGISVDSVYSHLAWKNMPIEKGGIGNVEFTLVSDINKDISK  134 (221)
T ss_dssp             TTCEEEEEECCCCTTTCCHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred             CCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhhhhcCccCCceEEEECCchHHHH
Confidence            3556777788 888 8999999999999999863 47777776543110                         123445


Q ss_pred             hhCCC---CCCCcEEEEEeCCCCceecCCC----CCCHHHHHHHHHHHhc
Q 013976          219 YFGIT---GEAPKVLAYTGNDDAKKHILDG----ELTLDKIKTFGEDFLE  261 (432)
Q Consensus       219 ~~~i~---~~~~P~i~i~~~~~~~~y~~~~----~~~~~~i~~fi~~~~~  261 (432)
                      .||+.   +...|+.++++.+....+...|    ..+.+.+.+.|+.+..
T Consensus       135 ~ygv~~~~g~~~P~~~lID~~G~I~~~~~g~~~~~~~~~ell~~l~~L~~  184 (221)
T 2c0d_A          135 NYNVLYDNSFALRGLFIIDKNGCVRHQTVNDLPIGRNVQEVLRTIDSIIH  184 (221)
T ss_dssp             HTTCEETTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHHH
T ss_pred             HcCCcccCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHhh
Confidence            56663   1124888888766544444322    3578889988888653

>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10

Probab=91.00  E-value=0.43  Score=38.15  Aligned_cols=79  Identities=10%  Similarity=-0.005  Sum_probs=45.4

Q ss_pred             ceEE-EE-EeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcc------------------cccchhhhhCCCCCC---
Q 013976          171 NQLL-LF-AVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED------------------VGKPVSEYFGITGEA---  226 (432)
Q Consensus       171 ~~i~-~~-~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~------------------~~~~l~~~~~i~~~~---  226 (432)
                      ++++ || +.| +.|....+.|.++.++|+++-.++.|.++..+                  ....+.+.||+...+   
T Consensus        37 ~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~p~~g  116 (159)
T 2a4v_A           37 VVVFFVYPRASTPGSTRQASGFRDNYQELKEYAAVFGLSADSVTSQKKFQSKQNLPYHLLSDPKREFIGLLGAKKTPLSG  116 (159)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTCEEEEEESCCHHHHHHHHHHHTCSSEEEECTTCHHHHHHTCBSSSSSC
T ss_pred             eEEEEEcCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCcccccCC
Confidence            3444 44 678 88999999999999998753245555443211                  123567778887651   


Q ss_pred             -CcEEEEEeCCCCceecCCCCCCHH
Q 013976          227 -PKVLAYTGNDDAKKHILDGELTLD  250 (432)
Q Consensus       227 -~P~i~i~~~~~~~~y~~~~~~~~~  250 (432)
                       .|+.+++ .++...+.+.|.....
T Consensus       117 ~~~~~~li-~~G~i~~~~~g~~~~~  140 (159)
T 2a4v_A          117 SIRSHFIF-VDGKLKFKRVKISPEV  140 (159)
T ss_dssp             BCCEEEEE-ETTEEEEEEESCCHHH
T ss_pred             ccceEEEE-cCCEEEEEEccCCccc
Confidence             1244444 4443445555544333

>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A

Probab=90.85  E-value=0.43  Score=39.50  Aligned_cols=94  Identities=7%  Similarity=-0.097  Sum_probs=59.9

Q ss_pred             CCcceEEEEE-eC-cchhhhHHHHHHHHHhccC-ceEEEEEecCCccc----------------------ccchhhhhCC
Q 013976          168 PIKNQLLLFA-VS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNEDV----------------------GKPVSEYFGI  222 (432)
Q Consensus       168 ~~~~~i~~~~-~~-~~~~~~~~~~~~~a~~~~~-~i~f~~vd~~~~~~----------------------~~~l~~~~~i  222 (432)
                      ++++++.||. .| +.|....+.|.++..+|++ .+.++.|..+....                      ...+.+.||+
T Consensus        30 Gk~vvl~F~~~~~Cp~C~~e~~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ygv  109 (186)
T 1n8j_A           30 GRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDN  109 (186)
T ss_dssp             TSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSEEEECTTSHHHHHTTC
T ss_pred             CCeEEEEEECCCCCCccHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCcccCCceeEEECCchHHHHHhCC
Confidence            4455666664 67 8899999999999998874 47777666543210                      1223445555


Q ss_pred             CC----CCCcEEEEEeCCCCceecCCCC----CCHHHHHHHHHHHhc
Q 013976          223 TG----EAPKVLAYTGNDDAKKHILDGE----LTLDKIKTFGEDFLE  261 (432)
Q Consensus       223 ~~----~~~P~i~i~~~~~~~~y~~~~~----~~~~~i~~fi~~~~~  261 (432)
                      ..    ...|+.++++.+....+.+.|.    .+.+.+.+.++.+..
T Consensus       110 ~~~~~g~~~p~~~lID~~G~i~~~~~~~~~~~~~~~~l~~~l~~l~~  156 (186)
T 1n8j_A          110 MREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQY  156 (186)
T ss_dssp             EETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHHH
T ss_pred             ccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHHH
Confidence            41    1248888887665444444332    368888888888754

>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A

Probab=90.79  E-value=0.27  Score=42.97  Aligned_cols=86  Identities=10%  Similarity=0.026  Sum_probs=60.2

Q ss_pred             EEeC-cchhhhHHHHHHHHHhccC-ceEEEEEecCCcc------------------------cccchhhhhCCCC-----
Q 013976          176 FAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNED------------------------VGKPVSEYFGITG-----  224 (432)
Q Consensus       176 ~~~~-~~~~~~~~~~~~~a~~~~~-~i~f~~vd~~~~~------------------------~~~~l~~~~~i~~-----  224 (432)
                      +++| +.|....+.+.+++.+|++ .+.++.|.++...                        ....+.+.||+..     
T Consensus        42 pa~~CpvC~tEl~~l~~l~~ef~~~gv~VI~VS~Ds~~~~~~w~~~~~~~~~~~i~fPil~D~~~~ia~~ygv~~~~~g~  121 (249)
T 3a2v_A           42 PADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVARRLGLLHAESAT  121 (249)
T ss_dssp             SCTTCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHTCCCCCSCEEECTTSHHHHHHTCCCTTCSS
T ss_pred             cCCCCcChHHHHHHHHHHHHHHHhCCcEEEEEECCCHHHHHHHHHHHHHhcCCCCceeEEECCchHHHHHhCCccccCCC
Confidence            4667 8899999999999999975 4777777775411                        1245778889862     


Q ss_pred             CCCcEEEEEeCCCCceecCCC----CCCHHHHHHHHHHHhc
Q 013976          225 EAPKVLAYTGNDDAKKHILDG----ELTLDKIKTFGEDFLE  261 (432)
Q Consensus       225 ~~~P~i~i~~~~~~~~y~~~~----~~~~~~i~~fi~~~~~  261 (432)
                      ...|++++++.++...+.+.+    ..+.++|.+.|+.+..
T Consensus       122 ~~~p~~fIID~dG~I~~~~~~~~~~gr~~~Ellr~I~alq~  162 (249)
T 3a2v_A          122 HTVRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKALKL  162 (249)
T ss_dssp             SCCEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHHH
T ss_pred             cccceEEEECCCCeEEEEEecCCcccchhHHHHHHHHHHHh
Confidence            145988888776544443322    3578999999888653

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1

Probab=90.64  E-value=0.087  Score=36.77  Aligned_cols=75  Identities=11%  Similarity=0.017  Sum_probs=46.5

Q ss_pred             eEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCceecCCCCCCHH
Q 013976          172 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLD  250 (432)
Q Consensus       172 ~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~~~~~  250 (432)
                      +++|+.+| +.|+...+.+.+.      .+.|..+|++........+..+|+...  |+++ . ++  ..   -+..+.+
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~~------~i~~~~vdi~~~~~~~~~~~~~g~~~v--P~~~-~-~g--~~---~~g~~~~   67 (81)
T 1h75_A            3 ITIYTRNDCVQCHATKRAMENR------GFDFEMINVDRVPEAAEALRAQGFRQL--PVVI-A-GD--LS---WSGFRPD   67 (81)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT------TCCCEEEETTTCHHHHHHHHHTTCCSS--CEEE-E-TT--EE---EESCCHH
T ss_pred             EEEEcCCCChhHHHHHHHHHHC------CCCeEEEECCCCHHHHHHHHHhCCCcc--CEEE-E-CC--EE---EecCCHH
Confidence            45677788 8999998888763      266778898763211222335788766  9984 3 22  22   2346777


Q ss_pred             HHHHHHHHHhc
Q 013976          251 KIKTFGEDFLE  261 (432)
Q Consensus       251 ~i~~fi~~~~~  261 (432)
                      .|.++++.+.+
T Consensus        68 ~l~~~l~~~~~   78 (81)
T 1h75_A           68 MINRLHPAPHA   78 (81)
T ss_dssp             HHGGGSCCC--
T ss_pred             HHHHHHhcccc
Confidence            77777765443

>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0

Probab=90.17  E-value=0.52  Score=39.13  Aligned_cols=40  Identities=13%  Similarity=0.098  Sum_probs=32.9

Q ss_pred             CCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEec
Q 013976          168 PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQM  207 (432)
Q Consensus       168 ~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~  207 (432)
                      +...++.|+..+ +.|..+.+.+.++.+++.+++.|..+..
T Consensus        25 ~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~   65 (192)
T 3h93_A           25 GKIEVVELFWYGCPHCYAFEPTIVPWSEKLPADVHFVRLPA   65 (192)
T ss_dssp             TSEEEEEEECTTCHHHHHHHHHHHHHHHTCCTTEEEEEEEC
T ss_pred             CCCEEEEEECCCChhHHHhhHHHHHHHHhCCCCeEEEEEeh
Confidence            334567777778 9999999999999999998888887665

>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0

Probab=89.66  E-value=0.69  Score=37.29  Aligned_cols=89  Identities=12%  Similarity=0.070  Sum_probs=50.9

Q ss_pred             CCcceEEEE-EeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchh--------------------hhhCCCCC
Q 013976          168 PIKNQLLLF-AVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVS--------------------EYFGITGE  225 (432)
Q Consensus       168 ~~~~~i~~~-~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~--------------------~~~~i~~~  225 (432)
                      +++.++.|| +.| +.|....+.+.++..+ . .+.++.+..+..+....++                    +.||+...
T Consensus        46 Gk~vvl~f~~~~~c~~C~~~~~~l~~~~~~-~-~~~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~  123 (166)
T 3p7x_A           46 GKKKLISVVPSIDTGVCDQQTRKFNSDASK-E-EGIVLTISADLPFAQKRWCASAGLDNVITLSDHRDLSFGENYGVVME  123 (166)
T ss_dssp             TSCEEEEECSCTTSHHHHHHHHHHHHHSCT-T-TSEEEEEESSCHHHHHHHHHHHTCSSCEEEECTTTCHHHHHHTCEET
T ss_pred             CCcEEEEEECCCCCCccHHHHHHHHHHhhc-C-CCEEEEEECCCHHHHHHHHHHcCCCceEEccCCchhHHHHHhCCccc
Confidence            445566666 556 7899988888888877 3 3666666555422122333                    44444320


Q ss_pred             ----CCcEEEEEeCCCCceec-----CCCCCCHHHHHHHHHH
Q 013976          226 ----APKVLAYTGNDDAKKHI-----LDGELTLDKIKTFGED  258 (432)
Q Consensus       226 ----~~P~i~i~~~~~~~~y~-----~~~~~~~~~i~~fi~~  258 (432)
                          ..|+.++++.++...+.     ..+..+.+.+.+.++.
T Consensus       124 ~~g~~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~il~~l~~  165 (166)
T 3p7x_A          124 ELRLLARAVFVLDADNKVVYKEIVSEGTDFPDFDAALAAYKN  165 (166)
T ss_dssp             TTTEECCEEEEECTTCBEEEEEECSBTTSCCCHHHHHHHHHT
T ss_pred             cCCceeeEEEEECCCCeEEEEEEcCCcccCCCHHHHHHHHhc
Confidence                14777777665543333     2234566777766653

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*

Probab=89.62  E-value=0.22  Score=36.74  Aligned_cols=57  Identities=5%  Similarity=0.027  Sum_probs=39.9

Q ss_pred             ceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcc----cccchhhhhCCCCCCCcEEEE
Q 013976          171 NQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED----VGKPVSEYFGITGEAPKVLAY  232 (432)
Q Consensus       171 ~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~----~~~~l~~~~~i~~~~~P~i~i  232 (432)
                      .+++|+.+| +.|+.+.+.+.+++..+.+   |..+|++...    ....+.+.+|+...  |++++
T Consensus        13 ~v~~f~~~~C~~C~~~~~~L~~~~~~~~~---~~~vdi~~~~~~~~~~~~l~~~~g~~~v--P~i~~   74 (105)
T 1kte_A           13 KVVVFIKPTCPFCRKTQELLSQLPFKEGL---LEFVDITATSDTNEIQDYLQQLTGARTV--PRVFI   74 (105)
T ss_dssp             CEEEEECSSCHHHHHHHHHHHHSCBCTTS---EEEEEGGGSTTHHHHHHHHHHHHSCCCS--CEEEE
T ss_pred             CEEEEEcCCCHhHHHHHHHHHHcCCCCCc---cEEEEccCCCCHHHHHHHHHHHhCCCCc--CeEEE
Confidence            367778888 9999999999988776653   5556766531    01246677888776  99844

>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10

Probab=89.13  E-value=0.4  Score=38.73  Aligned_cols=54  Identities=15%  Similarity=0.190  Sum_probs=37.5

Q ss_pred             CCcceEEEE-EeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCC
Q 013976          168 PIKNQLLLF-AVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGI  222 (432)
Q Consensus       168 ~~~~~i~~~-~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i  222 (432)
                      +++.++.|| +.| +.|....+.+.++..+| ..+.++.|..+.......+++.+++
T Consensus        43 gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~-~~v~vv~Is~d~~~~~~~~~~~~~~   98 (165)
T 1q98_A           43 SKRKVLNIFPSIDTGVCATSVRKFNQQAAKL-SNTIVLCISADLPFAQARFCGAEGI   98 (165)
T ss_dssp             TSEEEEEECSCSCSSCCCHHHHHHHHHHHHS-TTEEEEEEESSCHHHHTTCTTTTTC
T ss_pred             CCeEEEEEECCCCCCccHHHHHHHHHHHHHc-CCCEEEEEeCCCHHHHHHHHHHcCC
Confidence            445566666 678 89999999999999999 6688888877653212233444444

>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A

Probab=88.73  E-value=1.1  Score=36.20  Aligned_cols=94  Identities=7%  Similarity=-0.066  Sum_probs=60.3

Q ss_pred             CCcceEEEEEeC-c-chhhhHHHHHHHHHhcc---CceEEEEEecCCcc----------------------------ccc
Q 013976          168 PIKNQLLLFAVS-N-DSEKLLPVFEEAAKSFK---GKLIFVYVQMDNED----------------------------VGK  214 (432)
Q Consensus       168 ~~~~~i~~~~~~-~-~~~~~~~~~~~~a~~~~---~~i~f~~vd~~~~~----------------------------~~~  214 (432)
                      ++.+++.|+..| + .|....+.+.++.+++.   .++.++.+.++..+                            ...
T Consensus        28 Gk~vll~F~~t~C~~~C~~~~~~l~~~~~~~~~~~~~~~vv~is~d~~d~~~~~~~~~~~~~~~~~~w~~l~~~~~~~~~  107 (170)
T 3me7_A           28 GKPIILSPIYTHCRAACPLITKSLLKVIPKLGTPGKDFWVITFTFDPKDTLEDIKRFQKEYGIDGKGWKVVKAKTSEDLF  107 (170)
T ss_dssp             TSCEEEEEECTTCCSHHHHHHHHHHTTHHHHCCBTTTBEEEEEECCTTCCHHHHHHHHHHTTCCSSSEEEEEESSHHHHH
T ss_pred             CCEEEEEEECCCCCchhHHHHHHHHHHHHHhhhcCCceEEEEEECCCCCCHHHHHHHHHHcCCCCCCeEEEeCCCHHHHH
Confidence            566778888888 5 49999999999999985   34666666544100                            011


Q ss_pred             chhhhhCCCC-------CCCcEEEEEeCCCCceecCCC-CCCHHHHHHHHHHHhc
Q 013976          215 PVSEYFGITG-------EAPKVLAYTGNDDAKKHILDG-ELTLDKIKTFGEDFLE  261 (432)
Q Consensus       215 ~l~~~~~i~~-------~~~P~i~i~~~~~~~~y~~~~-~~~~~~i~~fi~~~~~  261 (432)
                      .+++.||+..       ...|++++++.++.....+.| ..+.+.|.+.|.....
T Consensus       108 ~~~~~~g~~~~~~~~~~~~~~~~~lID~~G~i~~~~~g~~~~~~~i~~~l~~~~~  162 (170)
T 3me7_A          108 KLLDAIDFRFMTAGNDFIHPNVVVVLSPELQIKDYIYGVNYNYLEFVNALRLARG  162 (170)
T ss_dssp             HHHHHTTCCCEEETTEEECCCEEEEECTTSBEEEEEESSSCCHHHHHHHHHHHTT
T ss_pred             HHHHHCCeEEecCCCccccCceEEEECCCCeEEEEEeCCCCCHHHHHHHHHHhhc
Confidence            2344444321       123667777766544444445 4789999999988764

>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A

Probab=88.55  E-value=0.85  Score=38.32  Aligned_cols=44  Identities=14%  Similarity=0.248  Sum_probs=34.3

Q ss_pred             CCcEEEEEeCCCChhhhhhHHHH-HHHHHHhcCCCCEEEEEEeCC
Q 013976          297 SKDVLLEIYAPWCGHCQAFEPTY-NKLAKHLRGVDSIVIAKMDGT  340 (432)
Q Consensus       297 ~~~~lv~f~~~~c~~c~~~~~~~-~~la~~~~~~~~~~~~~id~~  340 (432)
                      .+..|+.|....|++|..+.+.+ ..+.+.|.+..++.|...+.-
T Consensus        29 a~vtvvef~D~~CP~C~~~~~~~~~~l~~~~~~~g~v~~~~~~~p   73 (202)
T 3gha_A           29 APVTVVEFGDYKCPSCKVFNSDIFPKIQKDFIDKGDVKFSFVNVM   73 (202)
T ss_dssp             CSEEEEEEECTTCHHHHHHHHHTHHHHHHHTTTTTSEEEEEEECC
T ss_pred             CCEEEEEEECCCChhHHHHHHHhhHHHHHHhccCCeEEEEEEecC
Confidence            35689999999999999998875 567677754447888887754

>2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.04  E-value=2.2  Score=34.94  Aligned_cols=90  Identities=8%  Similarity=0.023  Sum_probs=56.0

Q ss_pred             CCcceEEEEEeC-cchhhhHHHH---HHHHHhccCceEEEEEecCCccccc-------------chh---hhhCCCCCCC
Q 013976          168 PIKNQLLLFAVS-NDSEKLLPVF---EEAAKSFKGKLIFVYVQMDNEDVGK-------------PVS---EYFGITGEAP  227 (432)
Q Consensus       168 ~~~~~i~~~~~~-~~~~~~~~~~---~~~a~~~~~~i~f~~vd~~~~~~~~-------------~l~---~~~~i~~~~~  227 (432)
                      ++..+|++..++ .+|..+....   .++..-++.++.+...|....+ ++             .++   +.++++.+  
T Consensus        55 ~K~LlVyLhs~~~~~~~~f~~~~L~~~~V~~~l~~nfV~w~~dv~~~e-~~~~~~~~~~~~~g~~~a~~~~~~~~~~~--  131 (178)
T 2ec4_A           55 RKLLAIYLHHDESVLTNVFCSQMLCAESIVSYLSQNFITWAWDLTKDS-NRARFLTMCNRHFGSVVAQTIRTQKTDQF--  131 (178)
T ss_dssp             CCEEEEEEECSSCSHHHHHHHHTTTCHHHHHHHHHTEEEEEEECCSHH-HHHHHHHHHHHHTCHHHHHHHHHSCSTTC--
T ss_pred             CcEEEEEEeCCCCccHHHHHHHhcCCHHHHHHHHcCEEEEEEeCCCch-hhhhhhhhhhhhhHHHHHHHHhhcCCCCC--
Confidence            333345555566 7777765322   2355555567888888988743 21             233   33778777  


Q ss_pred             cEEEEEeCCCCc---eecCCCCCCHHHHHHHHHHHh
Q 013976          228 KVLAYTGNDDAK---KHILDGELTLDKIKTFGEDFL  260 (432)
Q Consensus       228 P~i~i~~~~~~~---~y~~~~~~~~~~i~~fi~~~~  260 (432)
                      |.++++......   .....|..+.+.+..-+...+
T Consensus       132 P~l~ii~~~~~~~~vl~~~~G~~~~~~ll~~L~~~~  167 (178)
T 2ec4_A          132 PLFLIIMGKRSSNEVLNVIQGNTTVDELMMRLMAAM  167 (178)
T ss_dssp             SEEEEECCCSSCCCEEEEECSCCCHHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCceEEEEEEeCCCCHHHHHHHHHHHH
Confidence            999999755321   244678899988887776654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	432
d2djka1	133	c.47.1.2 (A:1-133) Protein disulfide isomerase, PD	2e-28
d2b5ea1	140	c.47.1.2 (A:365-504) Protein disulfide isomerase,	7e-23
d2djja1	116	c.47.1.2 (A:6-121) Protein disulfide isomerase, PD	8e-21
d1bjxa_	110	c.47.1.2 (A:) Protein disulfide isomerase, PDI {Hu	1e-19
d2c0ga2	122	c.47.1.7 (A:1024-1145) Windbeutel, N-terminal doma	2e-19
d2b5ea3	125	c.47.1.2 (A:240-364) Protein disulfide isomerase,	8e-17
d1g7ea_	122	c.47.1.7 (A:) Endoplasmic reticulum protein ERP29,	1e-15
d1thxa_	108	c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120	1e-12
d2trxa_	108	c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId	2e-12
d1meka_	120	c.47.1.2 (A:) Protein disulfide isomerase, PDI {Hu	2e-12
d1a8ya1	124	c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctola	1e-11
d1dbya_	107	c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardt	1e-10
d2b5ea4	119	c.47.1.2 (A:23-141) Protein disulfide isomerase, P	3e-10
d1ep7a_	112	c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardt	5e-10
d1f9ma_	112	c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia olera	7e-10
d1fb6a_	104	c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia olera	4e-09
d2es7a1	119	c.47.1.20 (A:7-125) Hydrogenase-1 operon protein H	8e-09
d1nhoa_	85	c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-lik	1e-08
d1qgva_	137	c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human	4e-08
d1a8ya2	102	c.47.1.3 (A:127-228) Calsequestrin {Rabbit (Orycto	2e-07
d1fo5a_	85	c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-lik	2e-07
d2trcp_	217	c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [	2e-07
d1zmaa1	115	c.47.1.1 (A:1-115) Bacterocin transport accessory	6e-07
d1ti3a_	113	c.47.1.1 (A:) Thioredoxin {European aspen (Populus	6e-07
d1sena_	135	c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19	7e-07
d1syra_	103	c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plas	7e-07
d2hfda1	132	c.47.1.20 (A:1-132) Hydrogenase-1 operon protein H	1e-06
d1gh2a_	107	c.47.1.1 (A:) Thioredoxin-like protein, N-terminal	4e-06
d1xfla_	114	c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsi	2e-05
d1r26a_	113	c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [Tax	2e-05
d1woua_	119	c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxi	2e-05
d1xwaa_	111	c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila m	9e-05
d2ifqa1	105	c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapien	1e-04
d1z5ye1	136	c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG	2e-04
d1a8la2	107	c.47.1.2 (A:120-226) Protein disulfide isomerase,	2e-04
d2dlxa1	147	c.47.1.24 (A:1-147) UBX domain-containing protein	0.001
d1wjka_	100	c.47.1.1 (A:) Thioredoxin-like structure containin	0.003

>d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} Length = 133

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

 Score =  106 bits (266), Expect = 2e-28
 Identities = 27/132 (20%), Positives = 54/132 (40%), Gaps = 5/132 (3%)

Query: 150 LPLVTIFTRENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDN 209
            PL+     E       + I    +    + + ++L    +  A++ +G + F  +   +
Sbjct: 5   SPLIGEIGPETYSDYMSAGIPLAYIFAETAEERKELSDKLKPIAEAQRGVINFGTI---D 61

Query: 210 EDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHIL--DGELTLDKIKTFGEDFLEGKLKPF 267
                  +    +  +     A       +K     + E+T + IK F +DF+ GK++P 
Sbjct: 62  AKAFGAHAGNLNLKTDKFPAFAIQEVAKNQKFPFDQEKEITFEAIKAFVDDFVAGKIEPS 121

Query: 268 FKSDPIPETNDG 279
            KS+PIPE  +G
Sbjct: 122 IKSEPIPEKQEG 133

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 91.8 bits (227), Expect = 7e-23
 Identities = 54/141 (38%), Positives = 76/141 (53%), Gaps = 3/141 (2%)

Query: 269 KSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRG 328
           KS  I E  D  V  +VG N DEIV D  KDVL+  YAPWCGHC+   PTY +LA     
Sbjct: 2   KSQEIFENQDSSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYAN 61

Query: 329 VDS-IVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA 387
             S ++IAK+D T N+      +G+PTI+ +P G KS + +     R++ +L+ F+K+N 
Sbjct: 62  ATSDVLIAKLDHTENDVRGVVIEGYPTIVLYPGGKKS-ESVVYQGSRSLDSLFDFIKENG 120

Query: 388 SIPFKIQKPTSAPKTEKPTSE 408
                 +      + EK   E
Sbjct: 121 HFDVDGKALYEEAQ-EKAAEE 140

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} Length = 116

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

 Score = 85.3 bits (210), Expect = 8e-21
 Identities = 45/113 (39%), Positives = 60/113 (53%), Gaps = 3/113 (2%)

Query: 278 DGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAK- 336
           +G V +VV  N++EIVLD++KDVL+E YAPWCGHC+A  P Y +L       +       
Sbjct: 1   EGPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVI 60

Query: 337 -MDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNAS 388
                T      +  GFPTI  +PAG K   P+     RTV  L KF+ +N  
Sbjct: 61  AKVDATANDVPDEIQGFPTIKLYPAGAKG-QPVTYSGSRTVEDLIKFIAENGK 112

>d1bjxa_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.4 bits (201), Expect = 1e-19
 Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 5/111 (4%)

Query: 51  ITTLDEAERVLTSETKVVLGYLNSLVGSESEVLADASRLEDDVNFYQTTNPDVAKIFHLD 110
           +     AE ++ S    V+G+   +    ++    A+   DD+ F  T+N DV   +   
Sbjct: 5   LPDGAAAESLVESSEVAVIGFFKDVESDSAKQFLQAAEAIDDIPFGITSNSDVFSKYQ-- 62

Query: 111 SKVNRPALVMVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENA 161
             +++  +V+ KK  E  + F +G+  K  + DF+  N+LPLV  FT + A
Sbjct: 63  --LDKDGVVLFKKFDEGRNNF-EGEVTKENLLDFIKHNQLPLVIEFTEQTA 110

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 122

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 81.7 bits (201), Expect = 2e-19
 Identities = 16/113 (14%), Positives = 36/113 (31%), Gaps = 13/113 (11%)

Query: 287 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRG-VDSIVIAKMDGTTNEHH 345
            +F++ V +     +++         +     +   +K        ++IA +        
Sbjct: 10  LSFEKTV-ERFPYSVVKFDIASPYGEKH--EAFTAFSKSAHKATKDLLIATVGVKDYGEL 66

Query: 346 RAKS---------DGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASI 389
             K+           FP+I  F      +  +   VD T+  L  F+  N  +
Sbjct: 67  ENKALGDRYKVDDKNFPSIFLFKGNADEYVQLPSHVDVTLDNLKAFVSANTPL 119

>d2b5ea3 c.47.1.2 (A:240-364) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 125

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 74.2 bits (182), Expect = 8e-17
 Identities = 22/123 (17%), Positives = 41/123 (33%), Gaps = 15/123 (12%)

Query: 156 FTRENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKP 215
                     ES +    L +    + E+  P+F E AK  +G + FV +   +      
Sbjct: 5   IDGSVFAQYVESGLPLGYLFYNDEEELEEYKPLFTELAKKNRGLMNFVSI---DARKFGR 61

Query: 216 VSEYFGITGEAPKVLAYTGNDDAK------------KHILDGELTLDKIKTFGEDFLEGK 263
            +    +  + P    +   +D K            +      L    I++  +DFL+G 
Sbjct: 62  HAGNLNMKEQFPLFAIHDMTEDLKYGLPQLSEEAFDELSDKIVLESKAIESLVKDFLKGD 121

Query: 264 LKP 266
             P
Sbjct: 122 ASP 124

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 122

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 70.4 bits (172), Expect = 1e-15
 Identities = 18/111 (16%), Positives = 47/111 (42%), Gaps = 13/111 (11%)

Query: 287 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT------ 340
             F +++  +SK VL++    +    +     + +LA++    D +++A++  +      
Sbjct: 12  VTFYKVI-PKSKFVLVKFDTQYPYGEKQ--DEFKRLAENSASSDDLLVAEVGISDYGDKL 68

Query: 341 ---TNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNAS 388
               +E ++   + +P    F  G+   +P+       V A+ ++LK    
Sbjct: 69  NMELSEKYKLDKESYPVFYLFRDGDFE-NPVPYSGAVKVGAIQRWLKGQGV 118

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} Length = 108

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

 Score = 62.1 bits (150), Expect = 1e-12
 Identities = 23/107 (21%), Positives = 37/107 (34%), Gaps = 3/107 (2%)

Query: 280 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG 339
            V  +    F+  VL   + VL+  +A WCG CQ   P  N  A        +V  ++D 
Sbjct: 3   GVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDP 62

Query: 340 TTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKN 386
                 + K +G P +               +   +   L  FL  +
Sbjct: 63  NPTTVKKYKVEGVPALRLVKGEQILDS---TEGVISKDKLLSFLDTH 106

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]} Length = 108

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

 Score = 61.7 bits (149), Expect = 2e-12
 Identities = 28/119 (23%), Positives = 49/119 (41%), Gaps = 11/119 (9%)

Query: 270 SDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV 329
           SD I    D        ++FD  VL     +L++ +A WCG C+   P  +++A   +G 
Sbjct: 1   SDKIIHLTD--------DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK 52

Query: 330 DSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNAS 388
            ++    +D       +    G PT+L F  G  +   +      +   L +FL  N +
Sbjct: 53  LTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGA---LSKGQLKEFLDANLA 108

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.8 bits (149), Expect = 2e-12
 Identities = 42/117 (35%), Positives = 58/117 (49%), Gaps = 6/117 (5%)

Query: 274 PETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIV 333
           PE  D  V ++  +NF E  L   K +L+E YAPWCGHC+A  P Y K A  L+   S +
Sbjct: 3   PEEED-HVLVLRKSNFAE-ALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEI 60

Query: 334 -IAKMDGTTNEHHRAK--SDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA 387
            +AK+D T       +    G+PTI FF  G+ +  P      R    +  +LKK  
Sbjct: 61  RLAKVDATEESDLAQQYGVRGYPTIKFFRNGDTA-SPKEYTAGREADDIVNWLKKRT 116

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 59.8 bits (144), Expect = 1e-11
 Identities = 20/128 (15%), Positives = 35/128 (27%), Gaps = 15/128 (11%)

Query: 272 PIPE-TNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGH------CQAFEPTYNKLAK 324
             PE      V  V   N+   V  + + + L  + P           +  E      A+
Sbjct: 3   DFPEYDGVDRVINVNAKNYKN-VFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQ 61

Query: 325 HLRGVDSIVIAKMDGTTNEHHRA--KSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKF 382
            L     +    +D   +             +I  F       + I  D + +   L +F
Sbjct: 62  VLEDKG-VGFGLVDSEKDAAVAKKLGLTEEDSIYVFK----EDEVIEYDGEFSADTLVEF 116

Query: 383 LKKNASIP 390
           L      P
Sbjct: 117 LLDVLEDP 124

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} Length = 107

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

 Score = 56.1 bits (134), Expect = 1e-10
 Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 3/106 (2%)

Query: 281 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 340
              V  + F  +VL+ S  VL++ +APWCG C+   P  +++A   +     V    D +
Sbjct: 3   AGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDES 62

Query: 341 TNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKN 386
            N          PTI+ F  G K    I          + + ++K 
Sbjct: 63  PNVASEYGIRSIPTIMVFKGGKKCETIIGA---VPKATIVQTVEKY 105

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.3 bits (132), Expect = 3e-10
 Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 4/120 (3%)

Query: 269 KSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRG 328
           + + +    D  V  +  ++F+E  +     VL E +APWCGHC+   P Y K A+ L  
Sbjct: 1   QQEAVAPE-DSAVVKLATDSFNE-YIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVE 58

Query: 329 VDSIVIAKMDGTTNE-HHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA 387
            +  +         +        GFP++  F   + + + I+ +  RT  A+ +F+ K +
Sbjct: 59  KNITLAQIDCTENQDLCMEHNIPGFPSLKIFKNSDVN-NSIDYEGPRTAEAIVQFMIKQS 117

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} Length = 112

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

 Score = 54.4 bits (130), Expect = 5e-10
 Identities = 24/114 (21%), Positives = 44/114 (38%), Gaps = 8/114 (7%)

Query: 279 GDVKIVVG-NNFDEIV---LDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVI 334
           G V ++     +D  +    +E K ++++  A WCG C+   P +  L+    G    + 
Sbjct: 2   GSVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLK 61

Query: 335 AKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNAS 388
             +D        A     PT   +  G K+ D +    D     L   + K+A+
Sbjct: 62  VDVDAVAAVAEAAGITAMPTFHVYKDGVKADDLVGASQD----KLKALVAKHAA 111

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]} Length = 112

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

 Score = 54.0 bits (129), Expect = 7e-10
 Identities = 26/115 (22%), Positives = 40/115 (34%), Gaps = 5/115 (4%)

Query: 275 ETNDGDVKIVVGNNFDEIVLDES-KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIV 333
           E   G V  V  + F  IV     K V+L+++  WCG C+A  P Y KLA+    V  + 
Sbjct: 2   EAIVGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLK 61

Query: 334 IAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNAS 388
           +                  PT       +   +      D     L + ++   S
Sbjct: 62  LDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAKYD----KLLEAIQAARS 112

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]} Length = 104

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

 Score = 51.5 bits (122), Expect = 4e-09
 Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 3/106 (2%)

Query: 281 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 340
           V+ V  +++ E VL+    V+++ +APWCG C+   P  ++LAK   G  ++     D  
Sbjct: 1   VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEA 60

Query: 341 TNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKN 386
                +      PT+LFF  G +    I          L   ++K 
Sbjct: 61  PGIATQYNIRSIPTVLFFKNGERKESIIGA---VPKSTLTDSIEKY 103

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

 Score = 51.1 bits (122), Expect = 8e-09
 Identities = 14/82 (17%), Positives = 23/82 (28%), Gaps = 4/82 (4%)

Query: 281 VKIVVGNNFDEIVLDESKD-VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG 339
            + V  +  D+ +       +LL                  +L +     D   +A  D 
Sbjct: 13  WQPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFD-WQVAVADL 71

Query: 340 TTNE--HHRAKSDGFPTILFFP 359
             +E    R     FP  L F 
Sbjct: 72  EQSEAIGDRFNVRRFPATLVFT 93

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 85

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 49.7 bits (118), Expect = 1e-08
 Identities = 9/88 (10%), Positives = 22/88 (25%), Gaps = 8/88 (9%)

Query: 300 VLLEI-YAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFF 358
           V +E+  +P C +C       ++  K       +    +     +         P I   
Sbjct: 3   VNIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMAVPAIAIN 62

Query: 359 PAGNKSFDPINVDVDRTVVALYKFLKKN 386
                           +   L++ +   
Sbjct: 63  GVVRFVG-------APSREELFEAINDE 83

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (118), Expect = 4e-08
 Identities = 12/83 (14%), Positives = 30/83 (36%), Gaps = 1/83 (1%)

Query: 282 KIVVGNNFDEIVLDES-KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 340
            +  G   D+ +L E  + V++     W   C   +     +A+ ++    I +  +   
Sbjct: 6   HLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEV 65

Query: 341 TNEHHRAKSDGFPTILFFPAGNK 363
            + +   +     T++FF     
Sbjct: 66  PDFNKMYELYDPCTVMFFFRNKH 88

>d1a8ya2 c.47.1.3 (A:127-228) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 102

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 47.1 bits (112), Expect = 2e-07
 Identities = 16/101 (15%), Positives = 33/101 (32%), Gaps = 6/101 (5%)

Query: 51  ITTLDEAERVLTSETKV-VLGYLNSLVGSE-SEVLADASRLEDDVNFYQTTNPDVAKIFH 108
           I    E +     E ++ ++GY  +            A      + F+ T +  VAK   
Sbjct: 4   IEGERELQAFENIEDEIKLIGYFKNKDSEHYKAFKEAAEEFHPYIPFFATFDSKVAK--- 60

Query: 109 LDSKVNRPALVMVKKETEKISYFADGKFDKSTIADFVFSNK 149
               +    +   +   E+     D    +  I +FV  ++
Sbjct: 61  -KLTLKLNEIDFYEAFMEEPVTIPDKPNSEEEIVNFVEEHR 100

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 85

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 46.5 bits (109), Expect = 2e-07
 Identities = 16/90 (17%), Positives = 28/90 (31%), Gaps = 7/90 (7%)

Query: 297 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTIL 356
           SK  +    +P C HC A +    ++A  +     +    +     +         PTI+
Sbjct: 2   SKVKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIV 61

Query: 357 FFPAGNKSFDPINVDVDRTVVALYKFLKKN 386
                             T  AL + +KK 
Sbjct: 62  INGDV-------EFIGAPTKEALVEAIKKR 84

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 217

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.9 bits (116), Expect = 2e-07
 Identities = 29/168 (17%), Positives = 53/168 (31%), Gaps = 14/168 (8%)

Query: 236 DDAKKHILDGELTLDKIKTFGEDFLE----GKLKPFFKSDPIPETNDGDVKIVVGNNFDE 291
           +   + +   E  L       E  L       ++   +            ++  G  F E
Sbjct: 53  ERMSRKMSIQEYELIHQDKEDEGCLRKYRRQCMQDMHQKLSFGPRYGFVYELETGEQFLE 112

Query: 292 IVLDESKD--VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN-EHHRAK 348
            +  E K   +++ IY      C A   +   LA        +   K+  +      R  
Sbjct: 113 TIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYPM---VKFCKIRASNTGAGDRFS 169

Query: 349 SDGFPTILFFPAGNKSFDPINVD----VDRTVVALYKFLKKNASIPFK 392
           SD  PT+L +  G    + I+V      D     +  FL +   +P +
Sbjct: 170 SDVLPTLLVYKGGELISNFISVAEQFAEDFFAADVESFLNEYGLLPER 217

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]} Length = 115

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 45.7 bits (107), Expect = 6e-07
 Identities = 13/92 (14%), Positives = 27/92 (29%), Gaps = 5/92 (5%)

Query: 275 ETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVI 334
             N  D+++       E  LD+ +     I    C +C+ F  T + +    +     + 
Sbjct: 5   LDNIKDLEVTTVVRAQE-ALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFIN 63

Query: 335 AKMDGTT----NEHHRAKSDGFPTILFFPAGN 362
           ++             R      P  +    G 
Sbjct: 64  SEEPSQLNDLQAFRSRYGIPTVPGFVHITDGQ 95

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]} Length = 113

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

 Score = 45.6 bits (107), Expect = 6e-07
 Identities = 20/101 (19%), Positives = 39/101 (38%), Gaps = 6/101 (5%)

Query: 288 NFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRA 347
           +F++      K ++++  A WC  C+   P + +LAK    V   +   +D         
Sbjct: 18  HFEKGK-GSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNVT-FLKVDVDELKAVAEEW 75

Query: 348 KSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNAS 388
             +  PT +F   G      ++  V      L   + K+A+
Sbjct: 76  NVEAMPTFIFLKDGK----LVDKTVGADKDGLPTLVAKHAT 112

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]} Length = 135

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (108), Expect = 7e-07
 Identities = 14/97 (14%), Positives = 33/97 (34%)

Query: 291 EIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSD 350
           +        +++ I+  WCG C+A +P + +  +      + V+  ++          S 
Sbjct: 19  KEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSP 78

Query: 351 GFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA 387
               I      + S       ++      YK+   +A
Sbjct: 79  DGGYIPRILFLDPSGKVHPEIINENGNPSYKYFYVSA 115

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 103

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 45.2 bits (106), Expect = 7e-07
 Identities = 21/107 (19%), Positives = 47/107 (43%), Gaps = 5/107 (4%)

Query: 281 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 340
           VKIV      + ++ +++ V+++ +A WCG C+   P Y + +K    +   +   +D  
Sbjct: 2   VKIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMV-FIKVDVDEV 60

Query: 341 TNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA 387
           +    +      PT   +  G+     ++  +     AL + ++K A
Sbjct: 61  SEVTEKENITSMPTFKVYKNGS----SVDTLLGANDSALKQLIEKYA 103

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]} Length = 132

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

 Score = 45.4 bits (107), Expect = 1e-06
 Identities = 14/78 (17%), Positives = 20/78 (25%), Gaps = 4/78 (5%)

Query: 284 VVGNNFDEIVLD-ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN 342
           V  +  D+ +       VLL                  +L +        V    D   +
Sbjct: 22  VSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVA-IADLEQS 80

Query: 343 E--HHRAKSDGFPTILFF 358
           E    R     FP  L F
Sbjct: 81  EAIGDRFGVFRFPATLVF 98

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (101), Expect = 4e-06
 Identities = 19/110 (17%), Positives = 37/110 (33%), Gaps = 11/110 (10%)

Query: 281 VKIVVG-NNFDEIVLD-ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD 338
           VK V    +F   +    S+  +++     CG C    P ++            V  ++D
Sbjct: 3   VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFS---SMSNKYPQAVFLEVD 59

Query: 339 GTTNEHHRAKSD--GFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKN 386
               +   A ++    PT  FF    +       D       L + +K++
Sbjct: 60  VHQCQGTAATNNISATPTFQFFRNKVRIDQYQGADAV----GLEEKIKQH 105

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 114

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 41.4 bits (96), Expect = 2e-05
 Identities = 16/104 (15%), Positives = 32/104 (30%), Gaps = 8/104 (7%)

Query: 288 NFDEIV---LDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH 344
            ++E +    +    V+++  A WCG C+ F   +             +    D   +  
Sbjct: 16  TWNEQLQKANESKTLVVVDFTASWCGPCR-FIAPFFADLAKKLPNVLFLKVDTDELKSVA 74

Query: 345 HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNAS 388
                   PT +F   G      +    D     L   + K+ +
Sbjct: 75  SDWAIQAMPTFMFLKEGKILDKVVGAKKD----ELQSTIAKHLA 114

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]} Length = 113

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

 Score = 41.4 bits (96), Expect = 2e-05
 Identities = 17/104 (16%), Positives = 30/104 (28%), Gaps = 2/104 (1%)

Query: 281 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 340
           V +     F   ++ E    +    A WCG C+  E    K   +            D  
Sbjct: 11  VDVYSVEQFRN-IMSEDILTVAWFTAVWCGPCKTIERPMEK-IAYEFPTVKFAKVDADNN 68

Query: 341 TNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLK 384
           +    + +    PT +   +G      I  +       L   +K
Sbjct: 69  SEIVSKCRVLQLPTFIIARSGKMLGHVIGANPGMLRQKLRDIIK 112

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (96), Expect = 2e-05
 Identities = 15/99 (15%), Positives = 25/99 (25%), Gaps = 15/99 (15%)

Query: 280 DVKIVVGNNFDEIVLD-ESKDVLLEIYA-------PWCGHCQAFEPTYNKLAKHLRGVDS 331
           +V +     F   V     K +              WC  C   EP   +  KH+     
Sbjct: 3   EVSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCV 62

Query: 332 IVIAKMDGTTNEHHRAKSD-------GFPTILFFPAGNK 363
            +  ++                      PT+L +    K
Sbjct: 63  FIYCQVGEKPYWKDPNNDFRKNLKVTAVPTLLKYGTPQK 101

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 111

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 39.5 bits (91), Expect = 9e-05
 Identities = 21/101 (20%), Positives = 37/101 (36%), Gaps = 5/101 (4%)

Query: 287 NNFDEIVLDES-KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHH 345
            + D  +   S K V+L+ +A WCG C+   P   +L+        ++   +D   +   
Sbjct: 14  ADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAM 73

Query: 346 RAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKN 386
                  PT +F   G K  +    +       L   +K N
Sbjct: 74  EYNISSMPTFVFLKNGVKVEEFAGANAK----RLEDVIKAN 110

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (89), Expect = 1e-04
 Identities = 21/107 (19%), Positives = 42/107 (39%), Gaps = 7/107 (6%)

Query: 281 VKIVVGNNFDEIVLDESKD--VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD 338
           VK +      +  LD + D  V+++  A WCG C+  +P ++ L++        +   +D
Sbjct: 2   VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS-NVIFLEVDVD 60

Query: 339 GTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKK 385
              +     +    PT  FF  G K  +    + +     L   + +
Sbjct: 61  DCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKE----KLEATINE 103

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]} Length = 136

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

 Score = 39.2 bits (90), Expect = 2e-04
 Identities = 22/119 (18%), Positives = 38/119 (31%), Gaps = 5/119 (4%)

Query: 286 GNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHH 345
           G  +   VL + K VLL ++A WC   +A     N+L+     V  +             
Sbjct: 9   GQFYQADVLTQGKPVLLNVWATWCPTSRAEHQYLNQLSAQGIRVVGMNYKDDRQKAISWL 68

Query: 346 RAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPFKIQKPTSAPKTEK 404
           +   + +   LF   G    D        T       +  N  I ++     +    E+
Sbjct: 69  KELGNPYALSLFDGDGMLGLDLGVYGAPET-----FLIDGNGIIRYRHAGDLNPRVWEE 122

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 107

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score = 38.4 bits (88), Expect = 2e-04
 Identities = 13/106 (12%), Positives = 26/106 (24%), Gaps = 8/106 (7%)

Query: 288 NFDEIVLDESKDVLLEI-YAPWCGHCQAFEPTYNKLAKHLRGVDSIVIA----KMDGTTN 342
              + + +  +DV + +   P C +C       +K A          I     +      
Sbjct: 5   ETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPE 64

Query: 343 EHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNAS 388
              +      P I+    G    +              + L    S
Sbjct: 65  WADQYNVMAVPKIVIQVNGEDRVEFEGA---YPEKMFLEKLLSALS 107

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]} Length = 147

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 0.001
 Identities = 15/102 (14%), Positives = 33/102 (32%), Gaps = 7/102 (6%)

Query: 296 ESKDVLLEIYAPWCGHCQAFEPTY--NKLAKHLRGVDSIVIAKMDGTTNEHHRAKS---D 350
           ++K +++ I       CQ        N+  K++     I       +       +     
Sbjct: 41  QNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLG 100

Query: 351 GFPTILFFPA--GNKSFDPINVDVDRTVVALYKFLKKNASIP 390
            FP +       G K  +   +DV   +  +  FL ++  + 
Sbjct: 101 DFPYVSILDPRTGQKLVEWHQLDVSSFLDQVTGFLGEHGQLD 142

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.7 bits (79), Expect = 0.003
 Identities = 9/80 (11%), Positives = 19/80 (23%), Gaps = 5/80 (6%)

Query: 286 GNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHH 345
           G++ +    + +  VL       C  C   +               +    +    N   
Sbjct: 4   GSSGNLSASNRALPVLTLFTKAPCPLCDEAKEVLQPYKDRF----ILQEVDITLPENSTW 59

Query: 346 RAKSDGFPTILFFPAGNKSF 365
             +   F   +F   G    
Sbjct: 60  -YERYKFDIPVFHLNGQFLM 78

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	432
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	99.92
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	99.87
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	99.87
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	99.85
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	99.84
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.84
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	99.83
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.83
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	99.81
d2djka1	133	Protein disulfide isomerase, PDI {Fungi (Humicola	99.81
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	99.77
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.76
d2c0ga2	122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	99.76
d1bjxa_	110	Protein disulfide isomerase, PDI {Human (Homo sapi	99.75
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.74
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	99.73
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	99.72
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	99.72
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	99.72
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	99.71
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	99.71
d1g7ea_	122	Endoplasmic reticulum protein ERP29, N-terminal do	99.67
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	99.67
d1a8ya2	102	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	99.67
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	99.64
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	99.64
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	99.63
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	99.62
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	99.61
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	99.6
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	99.59
d2b5ea3	125	Protein disulfide isomerase, PDI {Baker's yeast (S	99.56
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	99.49
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	99.48
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	99.47
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	99.46
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	99.46
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	99.43
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.39
d2trcp_	217	Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}	99.38
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	99.37
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.37
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	99.34
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	99.33
d2c0ga2	122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	99.24
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	99.23
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.18
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	99.13
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	99.12
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.12
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	99.02
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	99.02
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	99.01
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	99.01
d1z5ye1	136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	99.0
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	99.0
d1sena_	135	Thioredoxin-like protein p19, TLP19 {Human (Homo s	98.99
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	98.98
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	98.98
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	98.97
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	98.96
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	98.92
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	98.92
d2b5xa1	143	thiol:disulfide oxidoreductase YkuV {Bacillus subt	98.91
d1g7ea_	122	Endoplasmic reticulum protein ERP29, N-terminal do	98.9
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	98.85
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	98.83
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	98.81
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	98.8
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	98.79
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	98.78
d1i5ga_	144	Tryparedoxin II {Crithidia fasciculata [TaxId: 565	98.75
d1wjka_	100	Thioredoxin-like structure containing protein C330	98.72
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	98.71
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	98.66
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	98.63
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	98.59
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	98.59
d1jfua_	176	Membrane-anchored thioredoxin-like protein TlpA, s	98.47
d1o8xa_	144	Tryparedoxin I {Crithidia fasciculata [TaxId: 5656	98.45
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	98.38
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	98.27
d1z6na1	166	Hypothetical protein PA1234 {Pseudomonas aeruginos	98.16
d2djka1	133	Protein disulfide isomerase, PDI {Fungi (Humicola	98.1
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	98.05
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	97.86
d2trcp_	217	Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}	97.82
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	97.73
d2b5xa1	143	thiol:disulfide oxidoreductase YkuV {Bacillus subt	97.71
d2b5ea3	125	Protein disulfide isomerase, PDI {Baker's yeast (S	97.63
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	97.55
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	97.52
d1z5ye1	136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	97.46
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	97.43
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	97.38
d1a8ya3	119	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	97.31
d1a8la1	119	Protein disulfide isomerase, PDI {Archaeon Pyrococ	97.13
d1r7ha_	74	Glutaredoxin-like NRDH-redoxin {Corynebacterium am	97.13
d1a8ya2	102	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	96.99
d1z6ma1	172	Hypothetical protein EF0770 {Enterococcus faecalis	96.97
d1bjxa_	110	Protein disulfide isomerase, PDI {Human (Homo sapi	96.93
d1h75a_	76	Glutaredoxin-like NRDH-redoxin {Escherichia coli [	96.89
d1wjka_	100	Thioredoxin-like structure containing protein C330	96.88
d2cx4a1	160	Bacterioferritin comigratory protein {Archaeon Aer	96.86
d1sena_	135	Thioredoxin-like protein p19, TLP19 {Human (Homo s	96.66
d1egoa_	85	Glutaredoxin (Grx, thioltransferase) {Escherichia	96.62
d1i5ga_	144	Tryparedoxin II {Crithidia fasciculata [TaxId: 565	96.61
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	96.57
d1eeja1	156	Disulfide bond isomerase, DsbC, C-terminal domain	96.49
d2f8aa1	184	Glutathione peroxidase {Human (Homo sapiens) [TaxI	96.48
d2bmxa1	169	Alkyl hydroperoxide reductase AhpC {Mycobacterium	96.45
d1beda_	181	Disulfide-bond formation facilitator (DsbA) {Vibri	96.43
d1nm3a1	74	C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus	96.37
d1t3ba1	150	Disulfide bond isomerase, DsbC, C-terminal domain	96.31
d1o8xa_	144	Tryparedoxin I {Crithidia fasciculata [TaxId: 5656	96.22
d1fova_	82	Glutaredoxin (Grx, thioltransferase) {Escherichia	96.2
d1iloa_	77	MTH985, a thioredoxin {Archaeon Methanobacterium t	96.13
d1a8la1	119	Protein disulfide isomerase, PDI {Archaeon Pyrococ	96.1
d2b5ea2	98	Protein disulfide isomerase, PDI {Baker's yeast (S	96.08
d1ttza_	75	Hypothetical protein XCC2852 {Xanthomonas campestr	96.06
d1e2ya_	167	Tryparedoxin peroxidase (thioredoxin peroxidase ho	95.99
d2zcta1	237	Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}	95.98
d1v58a1	169	Thiol:disulfide interchange protein DsbG, C-termin	95.83
d1wp0a1	160	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	95.77
d1jfua_	176	Membrane-anchored thioredoxin-like protein TlpA, s	95.61
d1we0a1	166	Alkyl hydroperoxide reductase AhpC {Amphibacillus	95.35
d2a4va1	156	Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c	95.32
d1ktea_	105	Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr	95.02
d1qxha_	164	Thiol peroxidase Tpx {Escherichia coli [TaxId: 562	94.87
d1xvwa1	153	Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri	94.84
d1z6na1	166	Hypothetical protein PA1234 {Pseudomonas aeruginos	94.34
d1un2a_	195	Disulfide-bond formation facilitator (DsbA) {Esche	94.18
d1xzoa1	172	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	94.1
d1uula_	194	Tryparedoxin peroxidase (thioredoxin peroxidase ho	93.9
d1a8ya3	119	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	93.6
d1zyea1	158	Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [	93.59
d1zofa1	170	Thioredoxin reductase TsaA {Helicobacter pylori [T	93.36
d1n8ja_	186	Alkyl hydroperoxide reductase AhpC {Salmonella typ	92.89
d1psqa_	163	Probable thiol peroxidase PsaD {Streptococcus pneu	92.55
d2h01a1	170	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	92.28
d1hyua3	102	Alkyl hydroperoxide reductase subunit F (AhpF), N-	91.81
d1xvqa_	166	Thiol peroxidase Tpx {Mycobacterium tuberculosis [	91.67
d1q98a_	164	Thiol peroxidase Tpx {Haemophilus influenzae [TaxI	90.88
d2b7ka1	169	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	90.42
d1qmva_	197	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	89.55
d1wika_	109	Thioredoxin-like protein 2 {Mouse (Mus musculus) [	89.18
d2bmxa1	169	Alkyl hydroperoxide reductase AhpC {Mycobacterium	88.34
d1prxa_	220	1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId:	87.55
d2cx4a1	160	Bacterioferritin comigratory protein {Archaeon Aer	87.39
d1iloa_	77	MTH985, a thioredoxin {Archaeon Methanobacterium t	84.3
d1t1va_	93	SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]}	84.14
d2b5ea2	98	Protein disulfide isomerase, PDI {Baker's yeast (S	81.3
d1e2ya_	167	Tryparedoxin peroxidase (thioredoxin peroxidase ho	81.21

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1.3e-24  Score=175.12  Aligned_cols=124  Identities=40%  Similarity=0.745  Sum_probs=113.1

Q ss_pred             ccCCCCCCCCCCceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcC-CCCEEEEEEeCCCccccc
Q 013976          268 FKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRG-VDSIVIAKMDGTTNEHHR  346 (432)
Q Consensus       268 ~~se~~p~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~-~~~~~~~~id~~~~~~~~  346 (432)
                      ++||++|+.+++.|..|++++|++.+.+.++++||+||||||++|+.+.|.|.++|..+++ ...+.++.+|+..+...+
T Consensus         1 ~~Se~ip~~~~~~V~~l~~~nf~~~v~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~~~~~v~~~~~d~~~~~~~~   80 (140)
T d2b5ea1           1 VKSQEIFENQDSSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTENDVRG   80 (140)
T ss_dssp             CCCCCCCCCCSCSEEEECTTTHHHHHHCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGGCCCSS
T ss_pred             CCCCcCCccCCCCcEEecCcCHHHHHhcCCCCEEEEEEeccCcccchhHHHHHHHHHHHhccccceEEEeeeccchhccc
Confidence            4799999999999999999999999988889999999999999999999999999999875 246999999998888899


Q ss_pred             CCCCCCceEEEEeCCCcccCceeccCCCCHHHHHHHHHhcCCCCCc
Q 013976          347 AKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPFK  392 (432)
Q Consensus       347 ~~i~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~~~  392 (432)
                      ++|.++||+++|++|... .++.|.|.++.+.|.+||++++.....
T Consensus        81 ~~v~~~Ptl~~f~~g~~~-~~~~y~G~~t~~~l~~fi~~~~~~~~~  125 (140)
T d2b5ea1          81 VVIEGYPTIVLYPGGKKS-ESVVYQGSRSLDSLFDFIKENGHFDVD  125 (140)
T ss_dssp             CCCSSSSEEEEECCTTSC-CCCBCCSCCCHHHHHHHHHHHCTTCCC
T ss_pred             cccccCCeEEEEECCEEc-ceeEeCCCCCHHHHHHHHHHcCCCCCC
Confidence            999999999999999887 688899999999999999999766544

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=8.1e-22  Score=153.72  Aligned_cols=110  Identities=31%  Similarity=0.613  Sum_probs=99.2

Q ss_pred             CCCceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCce
Q 013976          277 NDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPT  354 (432)
Q Consensus       277 ~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~  354 (432)
                      .++.|..|+.++|++.+ ..++.+||.||++||++|+.+.|.|.+++..+.+ .++.|+.|||+.+..  .+++|.++||
T Consensus         8 ~~s~v~~lt~~~f~~~i-~~~~~~lV~fya~wC~~C~~~~~~~~~la~~~~~-~~v~~~~vd~~~~~~l~~~~~v~~~Pt   85 (119)
T d2b5ea4           8 EDSAVVKLATDSFNEYI-QSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVE-KNITLAQIDCTENQDLCMEHNIPGFPS   85 (119)
T ss_dssp             TTSSCEECCTTTHHHHH-TTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TTCEEEEEETTTCHHHHHHTTCCSSSE
T ss_pred             CCCccEEcCHHHHHHHH-hcCCeEEEEEECCccCcccccchhhhhhhhhhcc-cceeeeeeeccchHHHHHHhccccCCe
Confidence            35678999999999976 6678999999999999999999999999999975 369999999998876  6899999999


Q ss_pred             EEEEeCCCcccCceeccCCCCHHHHHHHHHhcCCC
Q 013976          355 ILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASI  389 (432)
Q Consensus       355 i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~  389 (432)
                      +++|++|+.. .++.|.|.++.+.|++||++++++
T Consensus        86 i~~f~~g~~~-~~~~y~g~~~~~~l~~fi~k~~~P  119 (119)
T d2b5ea4          86 LKIFKNSDVN-NSIDYEGPRTAEAIVQFMIKQSQP  119 (119)
T ss_dssp             EEEEETTCTT-CEEECCSCCSHHHHHHHHHHHTSC
T ss_pred             EEEEECCEEe-eeEEecCCCCHHHHHHHHHHhhCC
Confidence            9999999887 678899999999999999998763

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=99.87  E-value=1.9e-22  Score=157.08  Aligned_cols=112  Identities=46%  Similarity=0.867  Sum_probs=97.0

Q ss_pred             CCceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCC---CEEEEEEeCCCcccccCCCCCCce
Q 013976          278 DGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVD---SIVIAKMDGTTNEHHRAKSDGFPT  354 (432)
Q Consensus       278 ~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~---~~~~~~id~~~~~~~~~~i~~~P~  354 (432)
                      +|.|+.|++++|++.+.++++++||.||++||++|+.+.|.|++++..+....   .+.+...++..+. ..++|.++||
T Consensus         1 ~g~V~~lt~~nF~~~v~~~~k~vlV~fya~wC~~Ck~~~p~~~~la~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~Pt   79 (116)
T d2djja1           1 EGPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAND-VPDEIQGFPT   79 (116)
T ss_dssp             SCSSEECCTTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSC-CSSCCSSSSE
T ss_pred             CcCcEEcccCCHHHHHhcCCCCEEEEEEecccccccccchHHHHHHHHHhcccccceeEEEecccchhh-hcccccCCCE
Confidence            46799999999999988888999999999999999999999999999998642   3567777755543 4679999999


Q ss_pred             EEEEeCCCcccCceeccCCCCHHHHHHHHHhcCCCCC
Q 013976          355 ILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPF  391 (432)
Q Consensus       355 i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~~  391 (432)
                      +++|++|... .++.|.|.++.++|.+||+++++.+.
T Consensus        80 i~~f~~g~~~-~~~~~~g~~~~~~l~~fi~~~~~~k~  115 (116)
T d2djja1          80 IKLYPAGAKG-QPVTYSGSRTVEDLIKFIAENGKYKA  115 (116)
T ss_dssp             EEEECSSCTT-SCCCCCCCSCHHHHHHHHHHTSSSCC
T ss_pred             EEEEECCccC-ceEEecCCCCHHHHHHHHHHccCcCC
Confidence            9999999876 67789999999999999999987653

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=3.5e-21  Score=147.55  Aligned_cols=105  Identities=25%  Similarity=0.504  Sum_probs=96.5

Q ss_pred             CceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEE
Q 013976          279 GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTIL  356 (432)
Q Consensus       279 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~  356 (432)
                      ..|..|+.++|++.+.+.+++++|.|||+||++|+.+.|.+.+++..+..  ++.++.+|++++..  .+++|.++||++
T Consensus         2 ~~v~~lt~~~f~~~v~~~~~~v~v~F~a~wC~~C~~~~~~~~~~a~~~~~--~~~~~~vd~d~~~~l~~~~~v~~~PT~~   79 (108)
T d2trxa_           2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTAPKYGIRGIPTLL   79 (108)
T ss_dssp             TTEEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TEEEEEEETTTCTTHHHHTTCCSSSEEE
T ss_pred             CCceECCHHHHHHHHHhCCCcEEEEEECCCCCCccccCcHHHHHHHHhhc--ceeeeeccccchhhHHHHhCCCcEEEEE
Confidence            35888999999998888889999999999999999999999999998877  79999999998887  689999999999


Q ss_pred             EEeCCCcccCceeccCCCCHHHHHHHHHhcCC
Q 013976          357 FFPAGNKSFDPINVDVDRTVVALYKFLKKNAS  388 (432)
Q Consensus       357 ~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  388 (432)
                      +|++|+.+.   ++.|.++.+.|.+||+++++
T Consensus        80 ~~~~G~~v~---~~~G~~~~~~l~~~i~~~Ls  108 (108)
T d2trxa_          80 LFKNGEVAA---TKVGALSKGQLKEFLDANLA  108 (108)
T ss_dssp             EEETTEEEE---EEESCCCHHHHHHHHHHHHC
T ss_pred             EEECCEEEE---EEeCCCCHHHHHHHHHHhcC
Confidence            999998765   89999999999999999864

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=99.84  E-value=2.9e-21  Score=148.01  Aligned_cols=104  Identities=22%  Similarity=0.399  Sum_probs=95.7

Q ss_pred             ceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEE
Q 013976          280 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILF  357 (432)
Q Consensus       280 ~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~  357 (432)
                      .|..|+..+|++.+.+.+++++|.||++||++|+.+.|.|.+++..+.+  .+.|+.+|++++..  .+++|.++||+++
T Consensus         3 ~V~~lt~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~--~~~~~~vd~d~~~~l~~~~~I~~~Pt~~~   80 (108)
T d1thxa_           3 GVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSD--RLKVVKLEIDPNPTTVKKYKVEGVPALRL   80 (108)
T ss_dssp             SEEECCGGGHHHHTTTCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTT--TCEEEEEESTTCHHHHHHTTCCSSSEEEE
T ss_pred             CceECCHHHHHHHHHhCCCcEEEEEECCCCCCccccchHHHHHHHhcCC--cceeceecccccHHHHHHhcccCCCEEEE
Confidence            4889999999998878889999999999999999999999999999987  69999999999877  7899999999999


Q ss_pred             EeCCCcccCceeccCCCCHHHHHHHHHhcCC
Q 013976          358 FPAGNKSFDPINVDVDRTVVALYKFLKKNAS  388 (432)
Q Consensus       358 ~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  388 (432)
                      |++|+.+.   +|.|.++.+.|.+||+++++
T Consensus        81 ~~~g~~v~---~~~G~~~~~~l~~~i~~~Ln  108 (108)
T d1thxa_          81 VKGEQILD---STEGVISKDKLLSFLDTHLN  108 (108)
T ss_dssp             EETTEEEE---EEESCCCHHHHHHHHHHHHC
T ss_pred             EECCEEEE---EEeCCCCHHHHHHHHHHhcC
Confidence            99987665   89999999999999998763

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=99.84  E-value=2.5e-21  Score=147.29  Aligned_cols=102  Identities=26%  Similarity=0.524  Sum_probs=94.7

Q ss_pred             eEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEEE
Q 013976          281 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFF  358 (432)
Q Consensus       281 v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~  358 (432)
                      |++|++.+|++.+.+++++++|.|||+||++|+.+.|.|.+++..+.+  .+.++.+|++.+..  .+++|.++||+++|
T Consensus         1 v~el~d~~f~~~v~~~~~~vlv~F~a~wC~~C~~~~~~~~~l~~~~~~--~~~~~~v~~d~~~~l~~~~~V~~~Pt~~~~   78 (104)
T d1fb6a_           1 VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSG--KIAVYKLNTDEAPGIATQYNIRSIPTVLFF   78 (104)
T ss_dssp             CEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TCEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred             CeECchhhHHHHHHcCCCcEEEEEEcCccCCccccCchhHHHHHhhcC--ccceeEEecccchhhhhhcceeeeeEEEEE
Confidence            578999999999988889999999999999999999999999999987  68999999999887  79999999999999


Q ss_pred             eCCCcccCceeccCCCCHHHHHHHHHhcC
Q 013976          359 PAGNKSFDPINVDVDRTVVALYKFLKKNA  387 (432)
Q Consensus       359 ~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  387 (432)
                      ++|+.+.   ++.|..+.+.|.+||++++
T Consensus        79 ~~G~~v~---~~~G~~~~~~l~~~i~~~L  104 (104)
T d1fb6a_          79 KNGERKE---SIIGAVPKSTLTDSIEKYL  104 (104)
T ss_dssp             ETTEEEE---EEEECCCHHHHHHHHHHHC
T ss_pred             EcCeEEE---EEeCCCCHHHHHHHHHHhC
Confidence            9998765   8999999999999999874

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=5.4e-21  Score=149.55  Aligned_cols=111  Identities=34%  Similarity=0.665  Sum_probs=99.6

Q ss_pred             CCceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCC-CCEEEEEEeCCCccc--ccCCCCCCce
Q 013976          278 DGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV-DSIVIAKMDGTTNEH--HRAKSDGFPT  354 (432)
Q Consensus       278 ~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~-~~~~~~~id~~~~~~--~~~~i~~~P~  354 (432)
                      .+.|..|+.++|++.+ ++++.+||.||++||++|+.+.|.|.+++..+... ..+.++.+|++.+..  .+++|.++||
T Consensus         6 ~~~V~~l~~~~f~~~l-~~~k~vlV~Fya~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt   84 (120)
T d1meka_           6 EDHVLVLRKSNFAEAL-AAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPT   84 (120)
T ss_dssp             ETTEEECCTTTHHHHH-HHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSHHHHTCCSSSE
T ss_pred             CCCeEEcCHHHHHHHH-hcCCcEEEEEECCCcCCccccchhhhhhcccccccccceeeeccccccchhHHHHhCCccCCe
Confidence            4469999999999865 66789999999999999999999999999999753 479999999999876  6899999999


Q ss_pred             EEEEeCCCcccCceeccCCCCHHHHHHHHHhcCCCC
Q 013976          355 ILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIP  390 (432)
Q Consensus       355 i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~  390 (432)
                      +++|++|+.+ .+..|.|.++.++|.+||++++++.
T Consensus        85 ~~~~~~G~~~-~~~~~~g~~~~~~l~~fi~~~~~p~  119 (120)
T d1meka_          85 IKFFRNGDTA-SPKEYTAGREADDIVNWLKKRTGPA  119 (120)
T ss_dssp             EEEEESSCSS-SCEECCCCSSHHHHHHHHHTTSCCC
T ss_pred             EEEEECCeEe-eeEEecCCCCHHHHHHHHHHhhCCC
Confidence            9999999877 6788999999999999999998764

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.83  E-value=7.3e-21  Score=145.43  Aligned_cols=103  Identities=22%  Similarity=0.476  Sum_probs=94.8

Q ss_pred             eEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEEE
Q 013976          281 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFF  358 (432)
Q Consensus       281 v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~  358 (432)
                      +..++.++|++.+.+.++++||.|||+||++|+.+.|.|.+++..+.+  ++.++.+|++.+..  .+++|.++||+++|
T Consensus         3 ~~~i~~~~f~~~v~~s~kpvlv~F~a~wC~~C~~~~p~~~~~~~~~~~--~~~~~~vd~d~~~~l~~~~~V~~~Pt~~~~   80 (107)
T d1dbya_           3 AGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKD--KLKCVKLNTDESPNVASEYGIRSIPTIMVF   80 (107)
T ss_dssp             CEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TCEEEEEETTTCHHHHHHHTCCSSCEEEEE
T ss_pred             ceEecHHHHHHHHHhCCCcEEEEEECCCCCCccccChHHHHHHHhhcc--cceEEEEecccchhHHHHhcccceEEEEEE
Confidence            567899999999988889999999999999999999999999999987  68999999998877  78999999999999


Q ss_pred             eCCCcccCceeccCCCCHHHHHHHHHhcCC
Q 013976          359 PAGNKSFDPINVDVDRTVVALYKFLKKNAS  388 (432)
Q Consensus       359 ~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  388 (432)
                      ++|+.+.   ++.|..+.+.|.+||++++.
T Consensus        81 ~~G~~v~---~~~G~~~~~~l~~~i~~~L~  107 (107)
T d1dbya_          81 KGGKKCE---TIIGAVPKATIVQTVEKYLN  107 (107)
T ss_dssp             SSSSEEE---EEESCCCHHHHHHHHHHHCC
T ss_pred             ECCeEEE---EEeCCCCHHHHHHHHHHhhC
Confidence            9998765   89999999999999999863

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=99.81  E-value=3.2e-20  Score=141.29  Aligned_cols=101  Identities=21%  Similarity=0.409  Sum_probs=92.4

Q ss_pred             eEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEEE
Q 013976          281 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFF  358 (432)
Q Consensus       281 v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~  358 (432)
                      +..|+.++|++.+ +++++++|.|||+||++|+.+.|.|.+++..+.+  ++.|+++|++.+..  .+++|.++||+++|
T Consensus         2 ~i~lt~~~f~~~i-~~~k~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~--~~~~~~vd~~~~~~~~~~~~V~~~Pt~~~~   78 (105)
T d1nw2a_           2 TMTLTDANFQQAI-QGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHAD--KVTVAKLNVDENPETTSQFGIMSIPTLILF   78 (105)
T ss_dssp             CEEECTTTHHHHT-TSSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT--TCEEEEEETTTCHHHHHHTTCCBSSEEEEE
T ss_pred             EEEECHHHHHHHH-hCCCcEEEEEECCCCCCcccccchhhhhhhhcCC--ceEEEEEECCCCcccHHHCCcceeeEEEEE
Confidence            4578999999866 6679999999999999999999999999999987  69999999999877  68999999999999


Q ss_pred             eCCCcccCceeccCCCCHHHHHHHHHhcC
Q 013976          359 PAGNKSFDPINVDVDRTVVALYKFLKKNA  387 (432)
Q Consensus       359 ~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  387 (432)
                      ++|+.+.   ++.|..+.+.|.++|++.+
T Consensus        79 ~~G~~~~---~~~G~~~~~~l~~~i~~~L  104 (105)
T d1nw2a_          79 KGGEPVK---QLIGYQPKEQLEAQLADVL  104 (105)
T ss_dssp             ETTEEEE---EEESCCCHHHHHHHTTTTC
T ss_pred             ECCEEEE---EEECCCCHHHHHHHHHHHh
Confidence            9998775   8999999999999998875

>d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=99.81  E-value=7e-20  Score=145.49  Aligned_cols=128  Identities=21%  Similarity=0.357  Sum_probs=112.9

Q ss_pred             CCCceeecCCCchhhhccCCCcceEEEEEeCcchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCc
Q 013976          149 KLPLVTIFTRENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPK  228 (432)
Q Consensus       149 ~~p~v~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P  228 (432)
                      .+|+|.+++.+++..+++.+.+.+++|+....+.+.+...++++|++|++++.|+++|...   +...++.||+....+|
T Consensus         4 ~lPLv~e~~~~n~~~~~~~~~pl~~lf~~~~~~~~~~~~~~~~vA~~~~~ki~Fv~vd~~~---~~~~l~~~gl~~~~~P   80 (133)
T d2djka1           4 GSPLIGEIGPETYSDYMSAGIPLAYIFAETAEERKELSDKLKPIAEAQRGVINFGTIDAKA---FGAHAGNLNLKTDKFP   80 (133)
T ss_dssp             SCCCSEECCHHHHHHHHHTTSCEEEEECSCSSSHHHHHHHHHHHHHSSTTTSEEEEECTTT---TGGGTTTTTCCSSSSS
T ss_pred             CCCceeccChhhHHHHhcCCCCEEEEEeCCchHHHHHHHHHHHHHHHhcCceEEEEEeHHH---hHHHHHHhcCCcccCC
Confidence            5899999999999999998877555555444788999999999999999999999999887   4578999999988899


Q ss_pred             EEEEEeCCCCceecC--CCCCCHHHHHHHHHHHhcCCcCccccCCCCCCCCCC
Q 013976          229 VLAYTGNDDAKKHIL--DGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDG  279 (432)
Q Consensus       229 ~i~i~~~~~~~~y~~--~~~~~~~~i~~fi~~~~~g~l~~~~~se~~p~~~~~  279 (432)
                      +++|++...+..|.|  .+.++.++|.+||+++++|+++|+++||++|++++|
T Consensus        81 ~~~i~~~~~~~~~~~~~~~~i~~~~i~~Fi~d~~~Gkl~p~~kSe~iPe~~dg  133 (133)
T d2djka1          81 AFAIQEVAKNQKFPFDQEKEITFEAIKAFVDDFVAGKIEPSIKSEPIPEKQEG  133 (133)
T ss_dssp             EEEEECTTTCCBCCCCSSSCCCHHHHHHHHHHHHHTCCCCSSCCCCCCTTSCC
T ss_pred             cEEEEEcCCCceecCCccccCCHHHHHHHHHHHHcCCCCcccccCCCCCCCCC
Confidence            999998877777776  467899999999999999999999999999988764

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.77  E-value=7.4e-19  Score=137.74  Aligned_cols=106  Identities=14%  Similarity=0.082  Sum_probs=88.2

Q ss_pred             CCceEEEecccchhhhhcCCCcEEEEEeCCCChhh------hhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCC
Q 013976          278 DGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHC------QAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKS  349 (432)
Q Consensus       278 ~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c------~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i  349 (432)
                      ...|..|+.+||++.+ .+++.++|+||+|||++|      ..+.+.+..+|+.+.+ ..+.|+.|||+.+..  .+++|
T Consensus        10 ~~~V~~L~~~nf~~~l-~~~~~~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~~~-~~v~~a~Vd~~~~~~l~~~~~I   87 (124)
T d1a8ya1          10 VDRVINVNAKNYKNVF-KKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLED-KGVGFGLVDSEKDAAVAKKLGL   87 (124)
T ss_dssp             CCCCEECCTTTHHHHH-HHCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTGG-GTEEEEEEETTTSHHHHHTTTC
T ss_pred             CCccEECCHHHHHHHH-HhCCeEEEEEECCCccchhhhhHHHHHHHHHHHHHHHhcc-CCeEEEEEEeecccchhhcccc
Confidence            4568999999999977 456789999999999974      4445556666666655 369999999999977  79999


Q ss_pred             CCCceEEEEeCCCcccCceeccCCCCHHHHHHHHHhcCCC
Q 013976          350 DGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASI  389 (432)
Q Consensus       350 ~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~  389 (432)
                      .+|||+++|++|..+    .|.|.++.+.|.+||.+.+..
T Consensus        88 ~~yPTi~~f~~g~~~----~y~G~r~~~~l~~fi~~~l~~  123 (124)
T d1a8ya1          88 TEEDSIYVFKEDEVI----EYDGEFSADTLVEFLLDVLED  123 (124)
T ss_dssp             CSTTCEEEEESSSEE----ECCSCCSHHHHHHHHHHHHSC
T ss_pred             ccCCcEEEeccCccE----EeeCCCCHHHHHHHHHHhcCC
Confidence            999999999988554    899999999999999987653

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.76  E-value=6.3e-19  Score=135.24  Aligned_cols=104  Identities=22%  Similarity=0.461  Sum_probs=90.7

Q ss_pred             CceEEE-ecccchhhhh---cCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCC
Q 013976          279 GDVKIV-VGNNFDEIVL---DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGF  352 (432)
Q Consensus       279 ~~v~~l-~~~~~~~~~~---~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~  352 (432)
                      +.|..+ +.++|++.+.   ..+++++|.||++||++|+.+.|.|++++..+.+  ++.|+.+|++++..  .+++|+++
T Consensus         2 g~v~~i~t~~~fd~~l~~~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~--~v~~~~vd~d~~~~l~~~~~v~~~   79 (112)
T d1ep7a_           2 GSVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAG--KVIFLKVDVDAVAAVAEAAGITAM   79 (112)
T ss_dssp             CSEEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TSEEEEEETTTTHHHHHHHTCCBS
T ss_pred             CCEEEEeCHHHHHHHHHHHhhcCCeEEEEEEcCCcCCCcccchhhhhhhhcccc--eEEEEEeeccccccccccccccCC
Confidence            356777 5688888774   3468999999999999999999999999999986  69999999998877  68999999


Q ss_pred             ceEEEEeCCCcccCceeccCCCCHHHHHHHHHhcCC
Q 013976          353 PTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNAS  388 (432)
Q Consensus       353 P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  388 (432)
                      ||+++|++|..+.   ++.| .+.+.|.+||+++++
T Consensus        80 Pt~~~~~~G~~v~---~~~G-~~~~~l~~~i~k~~a  111 (112)
T d1ep7a_          80 PTFHVYKDGVKAD---DLVG-ASQDKLKALVAKHAA  111 (112)
T ss_dssp             SEEEEEETTEEEE---EEES-CCHHHHHHHHHHHHC
T ss_pred             CEEEEEECCEEEE---EEeC-cCHHHHHHHHHHHhC
Confidence            9999999998775   7777 699999999999875

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.76  E-value=1.3e-18  Score=135.79  Aligned_cols=107  Identities=16%  Similarity=0.233  Sum_probs=89.1

Q ss_pred             ceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcC-CCCEEEEEEeCCCccc-------ccCCC--
Q 013976          280 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRG-VDSIVIAKMDGTTNEH-------HRAKS--  349 (432)
Q Consensus       280 ~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~-~~~~~~~~id~~~~~~-------~~~~i--  349 (432)
                      .+..|+..+|++.+ .+++.+||.||||||++|+  .|.|.++|+.+.. ...+.++.+||+..+.       .+++|  
T Consensus         3 g~v~L~~~nFd~~v-~~~~~~lV~Fya~wC~~ck--~p~f~kla~~~~~~~~~v~ia~Vd~~~~~~~~n~~l~~~~~i~~   79 (122)
T d2c0ga2           3 GCVDLDELSFEKTV-ERFPYSVVKFDIASPYGEK--HEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKVDD   79 (122)
T ss_dssp             TCEECCTTTHHHHH-TTSSEEEEEEEESSCCSHH--HHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTTCCT
T ss_pred             ceEEcChHhHHHHH-hcCCcEEEEEECCCCCccc--CHHHHHHHHHHHHhCCCeEEEeccccccccccCHHHHHHhhccc
Confidence            36789999999987 5678999999999999999  4999999998754 3579999999976432       35666  


Q ss_pred             CCCceEEEEeCCCcccCceeccCCCCHHHHHHHHHhcCCC
Q 013976          350 DGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASI  389 (432)
Q Consensus       350 ~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~  389 (432)
                      .++||+++|++|......+.|.|.++.++|.+||+++++.
T Consensus        80 ~~~PTi~~f~~g~~~~~~~~~~g~rt~~~l~~fv~~~~~~  119 (122)
T d2c0ga2          80 KNFPSIFLFKGNADEYVQLPSHVDVTLDNLKAFVSANTPL  119 (122)
T ss_dssp             TSCCEEEEESSSSSSEEECCTTSCCCHHHHHHHHHHHSSC
T ss_pred             CCCCcEEEEeCCcccccccccCCCCCHHHHHHHHHHhcCc
Confidence            6899999999987643445788999999999999999875

>d1bjxa_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=3.9e-18  Score=129.76  Aligned_cols=108  Identities=29%  Similarity=0.458  Sum_probs=101.1

Q ss_pred             ceeeCCHHHHHHHhhcCCeEEEEEecCCCcchHHHHHHHhccCCCceEEEeCcHHHHhHcCCCCCCCCCeEEEEecCCCc
Q 013976           48 IYNITTLDEAERVLTSETKVVLGYLNSLVGSESEVLADASRLEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEK  127 (432)
Q Consensus        48 ~~~i~~~~~l~~~~~~~~~~vv~f~~~~~~~~~~~f~~~a~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~i~l~~~~~~~  127 (432)
                      +..|++.+++++|+..++++|||||.+.++..++.|.++|+...++.|+++.+.++++++|+..    |+|++||+.++.
T Consensus         2 a~~l~~~~~~e~f~~~~~v~VVGfF~~~~~~~~~~F~~~A~~~~d~~F~~t~~~~v~~~~~v~~----~~Ivl~k~~de~   77 (110)
T d1bjxa_           2 ATTLPDGAAAESLVESSEVAVIGFFKDVESDSAKQFLQAAEAIDDIPFGITSNSDVFSKYQLDK----DGVVLFKKFDEG   77 (110)
T ss_dssp             EEECCSHHHHHHHHHHSSEEEEEECTTTTSHHHHHHHHHHHHCSSSCEEEECCSHHHHHTTCSS----CEEEEEESSSSS
T ss_pred             ceEcCCHHHHHHHhccCCeEEEEEEcCCCchHHHHHHHHHHhCcCceEEEECCHHHHHHcCCCC----CeEEEeccCCcc
Confidence            5688999999999999999999999999999999999999655789999999999999999976    999999999888


Q ss_pred             eecccCCCCCHHHHHHHHHhcCCCceeecCCCc
Q 013976          128 ISYFADGKFDKSTIADFVFSNKLPLVTIFTREN  160 (432)
Q Consensus       128 ~~~y~~g~~~~~~l~~fi~~~~~p~v~~l~~~~  160 (432)
                      ...| .|+++.++|.+||..+++|+|.+++++|
T Consensus        78 ~~~~-~~~~~~~~l~~fi~~~~~PlV~e~~~e~  109 (110)
T d1bjxa_          78 RNNF-EGEVTKENLLDFIKHNQLPLVIEFTEQT  109 (110)
T ss_dssp             BCCC-CSCCCHHHHHHHHHHHSSCCCSSCCCTT
T ss_pred             cccc-CCCCCHHHHHHHHHHcCcCcEEecCCCC
Confidence            8888 8999999999999999999999999886

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=99.74  E-value=4.5e-18  Score=130.26  Aligned_cols=102  Identities=25%  Similarity=0.431  Sum_probs=89.0

Q ss_pred             CCceEEEecccchhhhhcC-CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCC-ccc--ccCCCCCCc
Q 013976          278 DGDVKIVVGNNFDEIVLDE-SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT-NEH--HRAKSDGFP  353 (432)
Q Consensus       278 ~~~v~~l~~~~~~~~~~~~-~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~-~~~--~~~~i~~~P  353 (432)
                      .+.|..++.++|.+.+... +++++|.||++||++|+.+.|.|.++++.+.+   +.|+.+|++. +..  .+++|.++|
T Consensus         5 ~g~v~~~~~d~f~~~l~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~---v~~~~vd~~~~~~~l~~~~~V~~~P   81 (112)
T d1f9ma_           5 VGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLD---VIFLKLDCNQENKTLAKELGIRVVP   81 (112)
T ss_dssp             TTSEEEECTTTHHHHHHTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT---SEEEEEECSSTTHHHHHHHCCSSSS
T ss_pred             ceeeEEeCHHHHHHHHHHcCCCEEEEEEEcCCCcchHHHHHHHhhhcccccc---ceeecccccccchhhHhheeeccCC
Confidence            4679999999999988654 47999999999999999999999999999865   7899999975 444  689999999


Q ss_pred             eEEEEeCCCcccCceeccCCCCHHHHHHHHHhc
Q 013976          354 TILFFPAGNKSFDPINVDVDRTVVALYKFLKKN  386 (432)
Q Consensus       354 ~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~  386 (432)
                      |+++|++|+.+.   ++.| .+.+.+.++|+++
T Consensus        82 t~~~~k~G~~v~---~~~G-~~~~~l~e~i~~~  110 (112)
T d1f9ma_          82 TFKILKENSVVG---EVTG-AKYDKLLEAIQAA  110 (112)
T ss_dssp             EEEEEETTEEEE---EEES-SCHHHHHHHHHHH
T ss_pred             EEEEEECCEEEE---EEeC-CCHHHHHHHHHHc
Confidence            999999998875   7888 4778999999875

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=5.3e-18  Score=128.60  Aligned_cols=100  Identities=18%  Similarity=0.270  Sum_probs=87.4

Q ss_pred             eEEE-ecccchhhhhcC-CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEE
Q 013976          281 VKIV-VGNNFDEIVLDE-SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTIL  356 (432)
Q Consensus       281 v~~l-~~~~~~~~~~~~-~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~  356 (432)
                      |+.+ +.++|++.+.+. ++.++|.||++||++|+.+.|.|+++++.+.+   +.|+.+|++++..  .+++|.++||++
T Consensus         3 v~~i~s~~~f~~~l~~~~~klvvv~F~a~wC~~Ck~~~p~~~~la~~~~~---~~f~~vd~d~~~~l~~~~~v~~~Pt~~   79 (107)
T d1gh2a_           3 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQ---AVFLEVDVHQCQGTAATNNISATPTFQ   79 (107)
T ss_dssp             EEEECSGGGHHHHHHHTTTSCEEEEEECSSCHHHHHHHHHHHHHHHHCTT---SEEEEEETTTSHHHHHHTTCCSSSEEE
T ss_pred             eEEcCCHHHHHHHHHhCCCCEEEEEEECCCCCCccccchhhhcccccccc---ccccccccccchhhhhhcCceeceEEE
Confidence            4555 458899887544 57899999999999999999999999998864   8999999999877  689999999999


Q ss_pred             EEeCCCcccCceeccCCCCHHHHHHHHHhcC
Q 013976          357 FFPAGNKSFDPINVDVDRTVVALYKFLKKNA  387 (432)
Q Consensus       357 ~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  387 (432)
                      +|++|+.+.   ++.| .+.+.|.++|++++
T Consensus        80 ~~~~G~~v~---~~~G-~~~~~l~~~i~k~l  106 (107)
T d1gh2a_          80 FFRNKVRID---QYQG-ADAVGLEEKIKQHL  106 (107)
T ss_dssp             EEETTEEEE---EEES-SCHHHHHHHHHHHH
T ss_pred             EEECCEEEE---EEeC-CCHHHHHHHHHHhh
Confidence            999999876   7888 59999999999886

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.72  E-value=8.4e-18  Score=129.39  Aligned_cols=104  Identities=22%  Similarity=0.395  Sum_probs=88.6

Q ss_pred             CCceEEE-ecccchhhhh---cCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCC
Q 013976          278 DGDVKIV-VGNNFDEIVL---DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDG  351 (432)
Q Consensus       278 ~~~v~~l-~~~~~~~~~~---~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~  351 (432)
                      ++.|..+ +.++|++.+.   +.++++||.|||+||++|+.+.|.|+++++.+.+   +.|+.+|++++..  .+++|++
T Consensus         5 ~~~vi~i~s~~~~~~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~---~~~~~vd~~~~~~l~~~~~V~~   81 (114)
T d1xfla_           5 EGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPN---VLFLKVDTDELKSVASDWAIQA   81 (114)
T ss_dssp             CSCCEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCSS---EEEEEEETTTSHHHHHHTTCCS
T ss_pred             CCcEEEEcCHHHHHHHHHHhhccCCeEEEEEEcCCCCCccccccchhhhcccccc---cceeEEEeeeceeeccccceee
Confidence            3445555 6677877663   4468999999999999999999999999998865   8999999999887  7899999


Q ss_pred             CceEEEEeCCCcccCceeccCCCCHHHHHHHHHhcCC
Q 013976          352 FPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNAS  388 (432)
Q Consensus       352 ~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  388 (432)
                      +||+++|++|+.+.   ++.| .+.+.|.+||.++++
T Consensus        82 ~Pt~~~~~~G~~v~---~~~G-~~~~~l~~~i~k~la  114 (114)
T d1xfla_          82 MPTFMFLKEGKILD---KVVG-AKKDELQSTIAKHLA  114 (114)
T ss_dssp             SSEEEEEETTEEEE---EEES-CCHHHHHHHHHHHCC
T ss_pred             eEEEEEEECCEEEE---EEeC-cCHHHHHHHHHHhhC
Confidence            99999999998775   6777 589999999999874

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.72  E-value=6.7e-18  Score=127.60  Aligned_cols=95  Identities=23%  Similarity=0.474  Sum_probs=83.6

Q ss_pred             ecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEEEeCCC
Q 013976          285 VGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGN  362 (432)
Q Consensus       285 ~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~~~g~  362 (432)
                      +..+|++.+ +++++++|.||++||++|+.+.|.|+++++.+.+   +.|+.+|++++..  .+++|.++||+++|++|+
T Consensus         7 s~~~f~~~i-~~~~~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~---~~~~~vd~d~~~~~~~~~~V~~~Pt~i~~k~G~   82 (103)
T d1syra_           7 SQAEFDSII-SQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTK---MVFIKVDVDEVSEVTEKENITSMPTFKVYKNGS   82 (103)
T ss_dssp             SHHHHHHHH-HHCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT---SEEEEEETTTTHHHHHHTTCCSSSEEEEEETTE
T ss_pred             CHHHHHHHH-hCCCcEEEEEeCCcccCcccccccchhhhhcccc---eEEEeeccccCcceeeeeeeecceEEEEEECCE
Confidence            346787766 5678999999999999999999999999999865   6899999999876  789999999999999998


Q ss_pred             cccCceeccCCCCHHHHHHHHHhcC
Q 013976          363 KSFDPINVDVDRTVVALYKFLKKNA  387 (432)
Q Consensus       363 ~~~~~~~y~g~~~~~~l~~fi~~~~  387 (432)
                      .+.   ++.| .+.+.|.+||++|+
T Consensus        83 ~v~---~~~G-~~~~~l~~~i~k~a  103 (103)
T d1syra_          83 SVD---TLLG-ANDSALKQLIEKYA  103 (103)
T ss_dssp             EEE---EEES-CCHHHHHHHHHTTC
T ss_pred             EEE---EEeC-cCHHHHHHHHHhhC
Confidence            775   7888 57899999999985

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.72  E-value=8.6e-18  Score=128.87  Aligned_cols=103  Identities=24%  Similarity=0.424  Sum_probs=88.6

Q ss_pred             CceEEEec-ccchhhhhc-CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCce
Q 013976          279 GDVKIVVG-NNFDEIVLD-ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPT  354 (432)
Q Consensus       279 ~~v~~l~~-~~~~~~~~~-~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~  354 (432)
                      +.|..+.. ++|+..+.+ .++++||.||++||++|+.+.|.|++++..+++  .+.++.+|++++..  .+++|.++||
T Consensus         5 ~~v~~i~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~--~~~~~~i~~d~~~~l~~~~~V~~~Pt   82 (111)
T d1xwaa_           5 AMVYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFAD--NVVVLKVDVDECEDIAMEYNISSMPT   82 (111)
T ss_dssp             CCEEECCSHHHHHHHHHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TEEEEEEETTTCHHHHHHTTCCSSSE
T ss_pred             CeEEEECCHHHHHHHHHhcCCCEEEEEEECCcccCccccchhHHHHhhhccc--ceEEEEEEeecCcchhhcCCCccccE
Confidence            34666654 778887754 458999999999999999999999999999987  69999999999887  6899999999


Q ss_pred             EEEEeCCCcccCceeccCCCCHHHHHHHHHhcC
Q 013976          355 ILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA  387 (432)
Q Consensus       355 i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  387 (432)
                      +++|++|+.+.   ++.|. +.+.|.+||++|+
T Consensus        83 ~~~~~~G~~v~---~~~G~-~~~~l~~~I~~~l  111 (111)
T d1xwaa_          83 FVFLKNGVKVE---EFAGA-NAKRLEDVIKANI  111 (111)
T ss_dssp             EEEEETTEEEE---EEESC-CHHHHHHHHHHTC
T ss_pred             EEEEECCEEEE---EEeCC-CHHHHHHHHHhcC
Confidence            99999998775   77874 6688999999875

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=9.9e-18  Score=127.06  Aligned_cols=100  Identities=21%  Similarity=0.407  Sum_probs=85.0

Q ss_pred             eEEEe-cccchhhhhcC-CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEE
Q 013976          281 VKIVV-GNNFDEIVLDE-SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTIL  356 (432)
Q Consensus       281 v~~l~-~~~~~~~~~~~-~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~  356 (432)
                      |+.+. .++|++.+... +++++|.|||+||++|+.+.|.|.++++.+.+   +.|+.+|++++..  .+++|.++||++
T Consensus         2 v~~i~s~~~f~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~~~~l~~~~~~---~~~~~vd~d~~~~~~~~~~V~~~Pt~~   78 (105)
T d2ifqa1           2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN---VIFLEVDVDDCQDVASECEVKCMPTFQ   78 (105)
T ss_dssp             CEEECSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT---SEEEEEETTTCHHHHHHTTCCBSSEEE
T ss_pred             eEEcCCHHHHHHHHHhCCCCEEEEEEEcCCccchhhhhhhhhhhcccccc---ceeeecccccCHhHHHHcCceEEEEEE
Confidence            34454 36788877544 57899999999999999999999999998865   6799999999877  689999999999


Q ss_pred             EEeCCCcccCceeccCCCCHHHHHHHHHhcC
Q 013976          357 FFPAGNKSFDPINVDVDRTVVALYKFLKKNA  387 (432)
Q Consensus       357 ~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  387 (432)
                      +|++|+.+.   ++.| .+.+.|.++|++.+
T Consensus        79 ~~~~G~~v~---~~~G-~~~~~l~~~i~~~l  105 (105)
T d2ifqa1          79 FFKKGQKVG---EFSG-ANKEKLEATINELV  105 (105)
T ss_dssp             EEETTEEEE---EEES-CCHHHHHHHHHHHC
T ss_pred             EEECCEEEE---EEeC-CCHHHHHHHHHhhC
Confidence            999998875   7888 48899999998753

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=99.71  E-value=7.1e-18  Score=129.66  Aligned_cols=103  Identities=20%  Similarity=0.376  Sum_probs=85.2

Q ss_pred             CceEEEec-ccchhhh---hcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCC
Q 013976          279 GDVKIVVG-NNFDEIV---LDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGF  352 (432)
Q Consensus       279 ~~v~~l~~-~~~~~~~---~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~  352 (432)
                      +.|..+.. ++|++.+   ...++++||.||++||++|+.+.|.|.++++.+.+   +.|+.+|++++..  .+++|.++
T Consensus         4 g~vi~i~s~e~~~~~l~~~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~---~~~~~vd~d~~~~l~~~~~I~~~   80 (113)
T d1ti3a_           4 GQVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPN---VTFLKVDVDELKAVAEEWNVEAM   80 (113)
T ss_dssp             CCEEEECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCSS---EEEEEEETTTCHHHHHHHHCSST
T ss_pred             CcEEEEeCHHHHHHHHHHHHcCCCEEEEEEEcCccccchhhhhhhhhhhccCCC---ceEEeeeeeccccccccCeeccc
Confidence            44555544 4455443   24568999999999999999999999999998854   8999999998877  68999999


Q ss_pred             ceEEEEeCCCcccCceeccCCCCHHHHHHHHHhcCC
Q 013976          353 PTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNAS  388 (432)
Q Consensus       353 P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  388 (432)
                      ||+++|++|+.+.   ++.| .+.+.|.+||++|++
T Consensus        81 Pt~~~~k~G~~v~---~~~G-~~~~~l~~~i~k~as  112 (113)
T d1ti3a_          81 PTFIFLKDGKLVD---KTVG-ADKDGLPTLVAKHAT  112 (113)
T ss_dssp             TEEEEEETTEEEE---EEEC-CCTTHHHHHHHHHHH
T ss_pred             ceEEEEECCEEEE---EEcC-CCHHHHHHHHHHHhC
Confidence            9999999998775   6667 688999999999875

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.67  E-value=9.5e-17  Score=124.97  Aligned_cols=105  Identities=17%  Similarity=0.297  Sum_probs=87.3

Q ss_pred             ceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCC-----ccc--c--cCCCC
Q 013976          280 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT-----NEH--H--RAKSD  350 (432)
Q Consensus       280 ~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~-----~~~--~--~~~i~  350 (432)
                      .+..|+..||++++ ..++.+||.||+|||.+|..  |.|.++|..+.+..++..+.+++..     +..  .  .++|.
T Consensus         5 ~~v~L~~~nFd~~i-~~~~~~lV~F~~~wc~~~~~--~~~~~la~~~~~~~~~~~~~V~~~~vd~~~n~~l~~~~~~~I~   81 (122)
T d1g7ea_           5 GALPLDTVTFYKVI-PKSKFVLVKFDTQYPYGEKQ--DEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKLDKE   81 (122)
T ss_dssp             SSCSCSHHHHHHHG-GGSSEEEEEEECSSCCTTTT--HHHHHHHHHGGGCSSEEEEEEESCCTTSCHHHHHHHHHTCSSS
T ss_pred             ceEECCHHhHHHHH-hhCCeEEEEEecCCcCcccC--HHHHHHHHHHHHHHHHhhhccceeeccccccHHHHHhhccccc
Confidence            46679999999977 66789999999999999864  8999999999886666666665544     333  2  35789


Q ss_pred             CCceEEEEeCCCcccCceeccCCCCHHHHHHHHHhcCC
Q 013976          351 GFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNAS  388 (432)
Q Consensus       351 ~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  388 (432)
                      +||||++|++|... .++.|.|.++.+.|.+||++++.
T Consensus        82 ~yPTi~~f~~G~~~-~~~~y~G~rt~~~l~~fi~~~~~  118 (122)
T d1g7ea_          82 SYPVFYLFRDGDFE-NPVPYSGAVKVGAIQRWLKGQGV  118 (122)
T ss_dssp             SCEEEEEEESSCCC-CCEEEESCCCHHHHHHHHHTTSC
T ss_pred             CCCeEEEEecCccc-CceecCCCCCHHHHHHHHHhccc
Confidence            99999999999876 68899999999999999999863

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.67  E-value=8.9e-17  Score=123.04  Aligned_cols=99  Identities=23%  Similarity=0.316  Sum_probs=83.6

Q ss_pred             eEEE-ecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEE
Q 013976          281 VKIV-VGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILF  357 (432)
Q Consensus       281 v~~l-~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~  357 (432)
                      +..+ +.++|++.+ ..++.++|.|||+||++|+.+.|.|.+++..+.   ++.|+.+|++++..  ..++|.++||+++
T Consensus        10 vi~i~s~~~~~~~~-~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~---~v~~~~vd~d~~~~l~~~~~V~~~Pt~~~   85 (113)
T d1r26a_          10 VVDVYSVEQFRNIM-SEDILTVAWFTAVWCGPCKTIERPMEKIAYEFP---TVKFAKVDADNNSEIVSKCRVLQLPTFII   85 (113)
T ss_dssp             CEEECCHHHHHHHH-HSSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT---TSEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred             eEEeCCHHHHHHHH-cCCCeEEEEEECCCCccchhhceeccccccccc---cccccccccccchhhHHHccccCCCEEEE
Confidence            4445 557788866 667899999999999999999999999999986   49999999999877  6899999999999


Q ss_pred             EeCCCcccCceeccCCCCHHHHHHHHHhcC
Q 013976          358 FPAGNKSFDPINVDVDRTVVALYKFLKKNA  387 (432)
Q Consensus       358 ~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  387 (432)
                      |++|+.+.   ++.| .+.+.+.++|++.+
T Consensus        86 ~~~G~~v~---~~~G-~~~~~l~~~l~~~i  111 (113)
T d1r26a_          86 ARSGKMLG---HVIG-ANPGMLRQKLRDII  111 (113)
T ss_dssp             EETTEEEE---EEES-SCHHHHHHHHHHHH
T ss_pred             EECCEEEE---EEeC-CCHHHHHHHHHHHh
Confidence            99998875   7777 46677777776543

>d1a8ya2 c.47.1.3 (A:127-228) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.67  E-value=2.9e-16  Score=115.87  Aligned_cols=98  Identities=16%  Similarity=0.217  Sum_probs=89.5

Q ss_pred             ceeeCCHHHHHHHhh-cCCeEEEEEecCCCcchHHHHHHHh-ccCCCceEEEeCcHHHHhHcCCCCCCCCCeEEEEecCC
Q 013976           48 IYNITTLDEAERVLT-SETKVVLGYLNSLVGSESEVLADAS-RLEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKET  125 (432)
Q Consensus        48 ~~~i~~~~~l~~~~~-~~~~~vv~f~~~~~~~~~~~f~~~a-~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~i~l~~~~~  125 (432)
                      |..|++.++++.|++ .++++|||||.+.+++.++.|.++| .+++++.|++++++++++++|+..    |+|+|||+.+
T Consensus         1 v~~i~~~~e~~~F~~~~d~v~VvGfF~~~~~~~~~~F~~~A~~~rd~~~F~~t~d~~va~~~~v~~----~~vvlfr~fd   76 (102)
T d1a8ya2           1 VELIEGERELQAFENIEDEIKLIGYFKNKDSEHYKAFKEAAEEFHPYIPFFATFDSKVAKKLTLKL----NEIDFYEAFM   76 (102)
T ss_dssp             EEEECSHHHHHHHTTCCSSCEEEEECSSTTCHHHHHHHHHHHHHTTTSCEEEECCHHHHHHHCCCT----TCEEEECTTC
T ss_pred             CeeecCHHHHHHHhccCCCEEEEEEECCCCcHHHHHHHHHHHHcCCCceEEEECCHHHHHHcCCCC----CCEEEeeecC
Confidence            357899999999998 5789999999998899999999999 788999999999999999999976    9999999999


Q ss_pred             CceecccCCC-CCHHHHHHHHHhcCC
Q 013976          126 EKISYFADGK-FDKSTIADFVFSNKL  150 (432)
Q Consensus       126 ~~~~~y~~g~-~~~~~l~~fi~~~~~  150 (432)
                      +....| .|. ++.++|.+||..|..
T Consensus        77 e~~~~~-~~~~~t~~~i~~Fi~~n~r  101 (102)
T d1a8ya2          77 EEPVTI-PDKPNSEEEIVNFVEEHRR  101 (102)
T ss_dssp             SSEEEC-SSSSCCHHHHHHHHHHTCC
T ss_pred             CCceec-CCCCCCHHHHHHHHHHhcc
Confidence            999999 774 899999999998753

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.64  E-value=2e-16  Score=120.44  Aligned_cols=98  Identities=13%  Similarity=0.152  Sum_probs=79.6

Q ss_pred             cccchhhhhcCCCc-EEEEEeCCCChhhhhhHHHHHHHHHHhc--CCCCEEEEEEeCCCccc--ccCCCCCCceEEEEeC
Q 013976          286 GNNFDEIVLDESKD-VLLEIYAPWCGHCQAFEPTYNKLAKHLR--GVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPA  360 (432)
Q Consensus       286 ~~~~~~~~~~~~~~-~lv~f~~~~c~~c~~~~~~~~~la~~~~--~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~~~  360 (432)
                      .++++. +.+.+++ +++.||++||++|+.+.|.|.++|....  ....+.+..+|++++..  .+++|.++||++++++
T Consensus         4 ~~~~e~-~~~~~~~v~i~~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~~~~~l~~~~~V~~vPTi~i~~~   82 (107)
T d1a8la2           4 DETKQA-IRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQVN   82 (107)
T ss_dssp             HHHHHH-HTTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHHHHHHTTCCSSCEEEEEET
T ss_pred             HHHHHH-HHhcCCCeEEEEEEcCccccchhhChhHHhhhhhhhhccCCcEEEEEeccccccccccccccccceEEEEEeC
Confidence            334443 4444555 4667999999999999999999987532  33479999999998876  7899999999999999


Q ss_pred             CCcccCceeccCCCCHHHHHHHHHhcC
Q 013976          361 GNKSFDPINVDVDRTVVALYKFLKKNA  387 (432)
Q Consensus       361 g~~~~~~~~y~g~~~~~~l~~fi~~~~  387 (432)
                      |..+.   ++.|..+.+.+.++|.+.+
T Consensus        83 G~~~~---~~~G~~~~~~~~~~i~~al  106 (107)
T d1a8la2          83 GEDRV---EFEGAYPEKMFLEKLLSAL  106 (107)
T ss_dssp             TEEEE---EEESCCCHHHHHHHHHHHH
T ss_pred             CeEEE---EEECCCCHHHHHHHHHHhh
Confidence            98764   8899999999999999865

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=4.2e-16  Score=122.79  Aligned_cols=100  Identities=15%  Similarity=0.198  Sum_probs=80.7

Q ss_pred             ecccchhhhhc-CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEEEeCC
Q 013976          285 VGNNFDEIVLD-ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAG  361 (432)
Q Consensus       285 ~~~~~~~~~~~-~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~~~g  361 (432)
                      +..+|++.+.. .++.++|.|||+||++|+.+.|.|.+++..+.+  .+.|+.||+++++.  ..|+|.++||+++|++|
T Consensus         9 s~~~~dq~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~--~v~~~~VDvd~~~~la~~~~I~~~PT~~~f~~g   86 (137)
T d1qgva_           9 NGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKN--FAVIYLVDITEVPDFNKMYELYDPCTVMFFFRN   86 (137)
T ss_dssp             SHHHHHHHHHTCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTT--TEEEEEEETTTCCTTTTSSCSCSSCEEEEEETT
T ss_pred             CHHHHHHHHHhCCCCEEEEEEECCCCccchhcChHHHHHHHHhhc--cceEEEeeccccchhhhhcCeeeEEEEEEEeCC
Confidence            34678888754 457999999999999999999999999999987  69999999999987  78999999999999999


Q ss_pred             CcccCc------eeccC-CCCHHHHHHHHHhc
Q 013976          362 NKSFDP------INVDV-DRTVVALYKFLKKN  386 (432)
Q Consensus       362 ~~~~~~------~~y~g-~~~~~~l~~fi~~~  386 (432)
                      +.+...      -.+.+ -.+.+.+.+.++..
T Consensus        87 ~~i~~~~g~~~~~k~~~~l~~~~~~i~~ie~i  118 (137)
T d1qgva_          87 KHIMIDLGTGNNNKINWAMEDKQEMVDIIETV  118 (137)
T ss_dssp             EEEEEECC------CCSCCSCHHHHHHHHHHH
T ss_pred             cEEEEEecCCCcceeeeehhhhHHHHHHHHHH
Confidence            765200      01112 24677888887765

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.63  E-value=3.2e-16  Score=113.78  Aligned_cols=82  Identities=21%  Similarity=0.220  Sum_probs=72.6

Q ss_pred             CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCcccCceeccCCC
Q 013976          297 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDR  374 (432)
Q Consensus       297 ~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~~~g~~~~~~~~y~g~~  374 (432)
                      ++..+++|||+||++|+.+.|.|.+++..+..  .+.+..+|++.+..  .+++|.++||++++++|       .+.|..
T Consensus         2 ~kv~v~~F~a~wC~~C~~~~p~~~~~~~~~~~--~~~~~~~~~d~~~~la~~~~V~~~Pt~~i~~~g-------~~~G~~   72 (85)
T d1fo5a_           2 SKVKIELFTSPMCPHCPAAKRVVEEVANEMPD--AVEVEYINVMENPQKAMEYGIMAVPTIVINGDV-------EFIGAP   72 (85)
T ss_dssp             CCEEEEEEECCCSSCCCTHHHHHHHHHHHCSS--SEEEEEEESSSSCCTTTSTTTCCSSEEEETTEE-------ECCSSS
T ss_pred             CceEEEEEECCCCcChHhhhhhcccccccccc--ccccccccccccccccccCCceEeeEEEEECCc-------EEECCC
Confidence            46788999999999999999999999999987  69999999998876  79999999999887654       467888


Q ss_pred             CHHHHHHHHHhcC
Q 013976          375 TVVALYKFLKKNA  387 (432)
Q Consensus       375 ~~~~l~~fi~~~~  387 (432)
                      +.+.|.+||++++
T Consensus        73 ~~~~l~~~i~~~L   85 (85)
T d1fo5a_          73 TKEALVEAIKKRL   85 (85)
T ss_dssp             SSHHHHHHHHHHC
T ss_pred             CHHHHHHHHHhcC
Confidence            9999999999874

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.62  E-value=3.5e-16  Score=120.46  Aligned_cols=98  Identities=13%  Similarity=0.216  Sum_probs=80.4

Q ss_pred             eEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc------ccCCCCCCce
Q 013976          281 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------HRAKSDGFPT  354 (432)
Q Consensus       281 v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~------~~~~i~~~P~  354 (432)
                      +..++.+.+.+.+ +++++++|+||++||++|+.+.|.|.+++..++.  .+.++.++...+..      .+++|.++||
T Consensus        11 ~~~~t~~~~~~~i-~~~~~~~v~f~~~~C~~C~~~~p~l~~~~~~~~~--~v~~v~~~~~~~~~~~~~~~~~~~V~~~PT   87 (115)
T d1zmaa1          11 LEVTTVVRAQEAL-DKKETATFFIGRKTCPYCRKFAGTLSGVVAETKA--HIYFINSEEPSQLNDLQAFRSRYGIPTVPG   87 (115)
T ss_dssp             SEECCHHHHHHHH-HTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCC--CCEEEETTCGGGHHHHHHHHHHHTCCSSCE
T ss_pred             eeeCCHHHHHHHH-hcCCCEEEEEcCCCCccHHHHHHHHHHHHHHhhh--hhhhheeecccccccccccccccccccccE
Confidence            5666778888865 7788999999999999999999999999999976  56665554333321      4689999999


Q ss_pred             EEEEeCCCcccCceeccCCCCHHHHHHHHH
Q 013976          355 ILFFPAGNKSFDPINVDVDRTVVALYKFLK  384 (432)
Q Consensus       355 i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~  384 (432)
                      +++|++|+...   ++.|..+.++|.+||.
T Consensus        88 li~~~~gk~~~---~~~G~~~~~el~~fla  114 (115)
T d1zmaa1          88 FVHITDGQINV---RCDSSMSAQEIKDFAG  114 (115)
T ss_dssp             EEEEETTEEEE---ECCTTCCHHHHHHHHT
T ss_pred             EEEEECCEEEE---EEcCCCCHHHHHHHHc
Confidence            99999998654   8999999999999983

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.61  E-value=1.5e-16  Score=122.59  Aligned_cols=103  Identities=15%  Similarity=0.121  Sum_probs=77.0

Q ss_pred             eEEEecccchhhhhcC-CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEE
Q 013976          281 VKIVVGNNFDEIVLDE-SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILF  357 (432)
Q Consensus       281 v~~l~~~~~~~~~~~~-~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~  357 (432)
                      .+.++..++++++... .+.+++.|+++||++|+.+.|+|.+|++.+.+. ++.++.+|++.+..  .+++|.++||+++
T Consensus        13 ~~~v~~~~ld~~~~~~~~~~vll~f~a~wCp~C~~~~pvl~eL~~~~~~~-~~~~~~Vd~d~~~~l~~~~~V~~~Pt~~~   91 (119)
T d2es7a1          13 WQPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQF-DWQVAVADLEQSEAIGDRFNVRRFPATLV   91 (119)
T ss_dssp             CEECCCC--------CCSEEEEECCCSCC----CCHHHHHHHHHHTCTTS-CCEEEEECHHHHHHHHHTTTCCSSSEEEE
T ss_pred             CceecccCHHHHHHhCCCcEEEEeecCCCCccHHHHHHHHHHHHHhcCCC-ceEEEEEECCCCHHHHHhcCcCcceEEEE
Confidence            5668889999887554 357888899999999999999999999999763 69999999998876  7999999999999


Q ss_pred             EeCCCcccCceeccCCCCHHHHHHHHHhcC
Q 013976          358 FPAGNKSFDPINVDVDRTVVALYKFLKKNA  387 (432)
Q Consensus       358 ~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  387 (432)
                      |++|+.+.   .+.|..+.+.+.++|+..+
T Consensus        92 ~~~G~~v~---~~~G~~~~~~l~~~i~~lL  118 (119)
T d2es7a1          92 FTDGKLRG---ALSGIHPWAELLTLMRSIV  118 (119)
T ss_dssp             ESCC-------CEESCCCHHHHHHHHHHHH
T ss_pred             EEcCeEEE---EeeCCCCHHHHHHHHHHHh
Confidence            99998876   8999999999999998754

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=99.60  E-value=7.7e-17  Score=126.34  Aligned_cols=107  Identities=16%  Similarity=0.101  Sum_probs=94.2

Q ss_pred             eEEEecccchhhhhcCC-CcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEE
Q 013976          281 VKIVVGNNFDEIVLDES-KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILF  357 (432)
Q Consensus       281 v~~l~~~~~~~~~~~~~-~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~  357 (432)
                      .+.++..+|++++.... +.++|.||++||++|+.+.|+|.+|++.+.+. .+.++.||++.+..  .+|+|.++||+++
T Consensus        19 ~~~~~~~~~d~~~~~~~~~vVll~f~a~wCp~C~~~~pvl~ela~~~~~~-~~~~a~Vd~d~~~~la~~~~V~~~PT~~~   97 (132)
T d2hfda1          19 WTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDY-TWQVAIADLEQSEAIGDRFGVFRFPATLV   97 (132)
T ss_dssp             CEEECHHHHHHHHHHCSEEEEEECSCCSCCSSSSCCTHHHHHHHTTCTTS-CEEEEEECHHHHHHHHHHHTCCSCCEEEE
T ss_pred             CcccccccHHHHHHhCCCcEEEEEeeCCCChhHHHHHHHHHHHHHHccCC-cceeEEEEecCCHHHHHhhccCcceeEEE
Confidence            45688999999886554 57888899999999999999999999999874 58899999998877  6899999999999


Q ss_pred             EeCCCcccCceeccCCCCHHHHHHHHHhcCCCCC
Q 013976          358 FPAGNKSFDPINVDVDRTVVALYKFLKKNASIPF  391 (432)
Q Consensus       358 ~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~~  391 (432)
                      |++|+.+.   .+.|.++.+.|.++|...+..+.
T Consensus        98 ~~~G~~v~---~~~G~~~~~~l~~~i~~ll~~~~  128 (132)
T d2hfda1          98 FTGGNYRG---VLNGIHPWAELINLMRGLVEPQQ  128 (132)
T ss_dssp             EETTEEEE---EECCCSCHHHHHHHHHHHHSCSS
T ss_pred             EEcCcEee---eecCCCCHHHHHHHHHHHhCccc
Confidence            99998876   89999999999999998876554

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.59  E-value=1.6e-15  Score=109.78  Aligned_cols=79  Identities=14%  Similarity=0.165  Sum_probs=70.2

Q ss_pred             EEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCcccCceeccCCCCHH
Q 013976          300 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVV  377 (432)
Q Consensus       300 ~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~~~g~~~~~~~~y~g~~~~~  377 (432)
                      .++.||++||++|+.+.|.|++++..+.+  ++.++.+|++++..  .+++|.++||+++  +|..     .|.|..+.+
T Consensus         4 ~v~~F~a~wC~~C~~~~p~~~~l~~~~~~--~v~~~~vd~d~~~~l~~~~~V~~~Pt~~~--~~~~-----~~~G~~~~~   74 (85)
T d1nhoa_           4 NIEVFTSPTCPYCPMAIEVVDEAKKEFGD--KIDVEKIDIMVDREKAIEYGLMAVPAIAI--NGVV-----RFVGAPSRE   74 (85)
T ss_dssp             CEEEESCSSSCCSTTHHHHHHHHHHHHCS--SCCEEEECTTTCGGGGGGTCSSCSSEEEE--TTTE-----EEECSSCCH
T ss_pred             EEEEEECCCCcchHHHHHHHhhhcccccc--cccccccccccchhhHHhcCceEeCEEEE--CCcE-----EEEcCCCHH
Confidence            46679999999999999999999999987  69999999998877  6899999999877  3332     688999999


Q ss_pred             HHHHHHHhcC
Q 013976          378 ALYKFLKKNA  387 (432)
Q Consensus       378 ~l~~fi~~~~  387 (432)
                      .|.+||++++
T Consensus        75 ~l~~~i~~~l   84 (85)
T d1nhoa_          75 ELFEAINDEM   84 (85)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhh
Confidence            9999999876

>d2b5ea3 c.47.1.2 (A:240-364) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.56  E-value=3e-15  Score=116.21  Aligned_cols=111  Identities=20%  Similarity=0.221  Sum_probs=96.6

Q ss_pred             eeecCCCchhhhccCCCcceEEEEEeCcchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEE
Q 013976          153 VTIFTRENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAY  232 (432)
Q Consensus       153 v~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i  232 (432)
                      +.+++++++..++.++.|.+++|+.+..+.+.++..+.++|++|++++.|+++|.++   +.+.++.||+.. ..|.+++
T Consensus         2 ~gei~~~~~~~y~~~~~Pl~~~f~~~~~~~~~~~~~~~~vAk~fkgki~Fv~~D~~~---~~~~l~~fgl~e-~~P~~~i   77 (125)
T d2b5ea3           2 FGEIDGSVFAQYVESGLPLGYLFYNDEEELEEYKPLFTELAKKNRGLMNFVSIDARK---FGRHAGNLNMKE-QFPLFAI   77 (125)
T ss_dssp             SCBCCHHHHHHHHHTTSCEEEEEESSHHHHHHHHHHHHHHHHHTTTTCEEEEEEHHH---HTTHHHHTTCCS-CSSEEEE
T ss_pred             CCccCHHHHHHHHhcCCCEEEEEeCChHHHHHHHHHHHHHHHHhcCeeEEEEEchHH---hHHHHHHcCCCc-cCCcEEE
Confidence            568999999999999977666666555788899999999999999999999999886   557899999976 5899999


Q ss_pred             EeCCCCceecCC-------------CCCCHHHHHHHHHHHhcCCcCcc
Q 013976          233 TGNDDAKKHILD-------------GELTLDKIKTFGEDFLEGKLKPF  267 (432)
Q Consensus       233 ~~~~~~~~y~~~-------------~~~~~~~i~~fi~~~~~g~l~~~  267 (432)
                      .+..++.+|.|.             ++++.++|.+|++++++|+++|.
T Consensus        78 ~~~~~~~ky~~~~~~~~~~~~~~~~~e~t~~~i~~F~~d~l~GKlkPi  125 (125)
T d2b5ea3          78 HDMTEDLKYGLPQLSEEAFDELSDKIVLESKAIESLVKDFLKGDASPI  125 (125)
T ss_dssp             EETTTTEEEECCCCCHHHHHTCCSCCCCCHHHHHHHHHHHHHTCCCCC
T ss_pred             EecccCcccccchhhhhhcccccccccCCHHHHHHHHHHHHcCCcCCC
Confidence            988888888774             57999999999999999999873

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.8e-14  Score=110.90  Aligned_cols=99  Identities=17%  Similarity=0.273  Sum_probs=78.3

Q ss_pred             eEEEecccchhhhhcC-CCcEEEEEeCC-------CChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCc-------cc-
Q 013976          281 VKIVVGNNFDEIVLDE-SKDVLLEIYAP-------WCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN-------EH-  344 (432)
Q Consensus       281 v~~l~~~~~~~~~~~~-~~~~lv~f~~~-------~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-------~~-  344 (432)
                      |...+.++|.+.+.+. +++++|+|||+       ||++|+.+.|.+.++++.+.+  ++.|+.||++..       .. 
T Consensus         4 i~v~~~~e~~~~l~~~~gk~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~--~~~~~~vdv~~~~~~~d~~~~l   81 (119)
T d1woua_           4 VSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISE--GCVFIYCQVGEKPYWKDPNNDF   81 (119)
T ss_dssp             EEEESHHHHHHHHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCT--TEEEEEEECCCHHHHHCTTCHH
T ss_pred             EEeCCHHHHHHHHHHcCCCEEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHhcCC--ceEEEEEECCCCcccchhhhhH
Confidence            4555667888877554 47899999995       999999999999999998886  699999998643       22 


Q ss_pred             -ccCCCCCCceEEEEeCCCcccCceeccCCCCHHHHHHHHHh
Q 013976          345 -HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKK  385 (432)
Q Consensus       345 -~~~~i~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~  385 (432)
                       .+++|.++||+++|++|+++.   .+.+ .+.+.|..|+++
T Consensus        82 ~~~~~V~~iPT~i~~~~g~~l~---~~~~-~~~~ll~~~~~e  119 (119)
T d1woua_          82 RKNLKVTAVPTLLKYGTPQKLV---ESEC-LQANLVEMLFSE  119 (119)
T ss_dssp             HHHHCCCSSSEEEETTSSCEEE---GGGG-GCHHHHHHHHHC
T ss_pred             HHhCCeEEEEEEEEEECCeEEe---eeec-CCHHHHHHHhcC
Confidence             468999999999999987652   4444 567777777763

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=99.48  E-value=9.8e-14  Score=105.27  Aligned_cols=104  Identities=17%  Similarity=0.264  Sum_probs=91.1

Q ss_pred             ceeecCCCchhh-hccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcE
Q 013976          152 LVTIFTRENAPS-VFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKV  229 (432)
Q Consensus       152 ~v~~l~~~~~~~-~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~  229 (432)
                      .|.++|.++|+. +...++++++.||++| ++|+.+.+.|.+++.++.+.+.|+.+|+++   ++.+++.|+|++.  |+
T Consensus         3 ~V~~lt~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~d~---~~~l~~~~~I~~~--Pt   77 (108)
T d1thxa_           3 GVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDP---NPTTVKKYKVEGV--PA   77 (108)
T ss_dssp             SEEECCGGGHHHHTTTCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTT---CHHHHHHTTCCSS--SE
T ss_pred             CceECCHHHHHHHHHhCCCcEEEEEECCCCCCccccchHHHHHHHhcCCcceeceecccc---cHHHHHHhcccCC--CE
Confidence            478899999986 5566677888899999 999999999999999999999999999998   6799999999998  99


Q ss_pred             EEEEeCCCCceecCCCCCCHHHHHHHHHHHhc
Q 013976          230 LAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  261 (432)
Q Consensus       230 i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  261 (432)
                      ++++.++ .....+.|..+.+.|.+||+++++
T Consensus        78 ~~~~~~g-~~v~~~~G~~~~~~l~~~i~~~Ln  108 (108)
T d1thxa_          78 LRLVKGE-QILDSTEGVISKDKLLSFLDTHLN  108 (108)
T ss_dssp             EEEEETT-EEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             EEEEECC-EEEEEEeCCCCHHHHHHHHHHhcC
Confidence            9999754 345567899999999999999874

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.47  E-value=1.8e-13  Score=105.64  Aligned_cols=105  Identities=15%  Similarity=0.142  Sum_probs=93.2

Q ss_pred             CceeecCCCchhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccC-ceEEEEEecCCcccccchhhhhCCCCCCCc
Q 013976          151 PLVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNEDVGKPVSEYFGITGEAPK  228 (432)
Q Consensus       151 p~v~~l~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~-~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P  228 (432)
                      +.|.+++.++|+.++.++..++|.||++| ++|+.+.+.|.++|..+.+ .+.|+.|||+.   +..++..|+|.++  |
T Consensus        10 s~v~~lt~~~f~~~i~~~~~~lV~fya~wC~~C~~~~~~~~~la~~~~~~~v~~~~vd~~~---~~~l~~~~~v~~~--P   84 (119)
T d2b5ea4          10 SAVVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTE---NQDLCMEHNIPGF--P   84 (119)
T ss_dssp             SSCEECCTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTT---CHHHHHHTTCCSS--S
T ss_pred             CccEEcCHHHHHHHHhcCCeEEEEEECCccCcccccchhhhhhhhhhcccceeeeeeeccc---hHHHHHHhccccC--C
Confidence            46889999999999888888899999999 9999999999999999975 59999999998   6699999999998  9


Q ss_pred             EEEEEeCCC-CceecCCCCCCHHHHHHHHHHHh
Q 013976          229 VLAYTGNDD-AKKHILDGELTLDKIKTFGEDFL  260 (432)
Q Consensus       229 ~i~i~~~~~-~~~y~~~~~~~~~~i~~fi~~~~  260 (432)
                      +++++.+++ ...+.|.|.++.++|.+||.+..
T Consensus        85 ti~~f~~g~~~~~~~y~g~~~~~~l~~fi~k~~  117 (119)
T d2b5ea4          85 SLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQS  117 (119)
T ss_dssp             EEEEEETTCTTCEEECCSCCSHHHHHHHHHHHT
T ss_pred             eEEEEECCEEeeeEEecCCCCHHHHHHHHHHhh
Confidence            999986654 45567899999999999999864

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.46  E-value=8.3e-14  Score=102.81  Aligned_cols=87  Identities=17%  Similarity=0.201  Sum_probs=70.9

Q ss_pred             cchhhhhcCCC-cEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCcc
Q 013976          288 NFDEIVLDESK-DVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKS  364 (432)
Q Consensus       288 ~~~~~~~~~~~-~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~~~g~~~  364 (432)
                      ++.+.+.+-.+ ..++.|+++||++|+.+.|.|+++|..+.   ++.+..+|++.+..  .+++|.++||+++  +|.. 
T Consensus         5 ~~~e~ik~l~~~~~i~~F~s~~C~~C~~~~p~~~~~a~~~~---~i~~~~vd~~~~~~l~~~~~I~~vPt~~~--ng~~-   78 (96)
T d1hyua4           5 SLLEQIRDIDGDFEFETYYSLSCHNCPDVVQALNLMAVLNP---RIKHTAIDGGTFQNEITERNVMGVPAVFV--NGKE-   78 (96)
T ss_dssp             HHHHHHHHCCSCEEEEEEECTTCSSHHHHHHHHHHHHHHCT---TEEEEEEETTTCHHHHHHTTCCSSSEEEE--TTEE-
T ss_pred             HHHHHHHhcCCCeEEEEEECCCCcchHHHHHHHHHHHHhCC---ceEEEEEecccchHHHhhcccccccEEEE--CCEE-
Confidence            34444544444 56888999999999999999999998754   59999999999887  6899999999855  5543 


Q ss_pred             cCceeccCCCCHHHHHHHHH
Q 013976          365 FDPINVDVDRTVVALYKFLK  384 (432)
Q Consensus       365 ~~~~~y~g~~~~~~l~~fi~  384 (432)
                          .+.|.++.+.|+++|+
T Consensus        79 ----~~~G~~~~~~l~~~le   94 (96)
T d1hyua4          79 ----FGQGRMTLTEIVAKVD   94 (96)
T ss_dssp             ----EEESCCCHHHHHHHHC
T ss_pred             ----EEecCCCHHHHHHHHh
Confidence                5789999999999885

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=99.46  E-value=3.7e-14  Score=109.44  Aligned_cols=99  Identities=23%  Similarity=0.457  Sum_probs=74.6

Q ss_pred             ccchhhhhc-CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc------ccCCCCCCceEEEE-
Q 013976          287 NNFDEIVLD-ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------HRAKSDGFPTILFF-  358 (432)
Q Consensus       287 ~~~~~~~~~-~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~------~~~~i~~~P~i~~~-  358 (432)
                      ++++..+.+ .++++||.|||+||++|+.+.|.+..++.......++.+..+|+..+..      .+++|.++|++++| 
T Consensus        11 ~~~~~~l~~~~gK~vlv~F~a~wC~~C~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~~~~   90 (117)
T d2fwha1          11 DELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLNVLGLPTILFFD   90 (117)
T ss_dssp             HHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTTTSEEEEEECTTCCHHHHHHHHHTTCCSSSEEEEEC
T ss_pred             HHHHHHHHHcCCCeEEEEEecccCCcccccchhHHhHHHHHHhccceEEEecccccchhHHHHHHhhhehhhceEEEEEe
Confidence            455555533 4689999999999999999999985554433332357888888876654      46899999999999 


Q ss_pred             eCCCcccCceeccCCCCHHHHHHHHHhc
Q 013976          359 PAGNKSFDPINVDVDRTVVALYKFLKKN  386 (432)
Q Consensus       359 ~~g~~~~~~~~y~g~~~~~~l~~fi~~~  386 (432)
                      ++|+.+ ...++.|.++.+.+.++|++.
T Consensus        91 ~~G~~~-~~~~~~G~~~~~~~~~~l~~~  117 (117)
T d2fwha1          91 GQGQEH-PQARVTGFMDAETFSAHLRDR  117 (117)
T ss_dssp             TTSCBC-GGGCBCSCCCHHHHHHHHHHC
T ss_pred             CCCcEE-ecccccccCCHHHHHHHHhcC
Confidence            556654 233678999999999999863

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=99.43  E-value=1.6e-13  Score=103.47  Aligned_cols=102  Identities=18%  Similarity=0.204  Sum_probs=91.5

Q ss_pred             eeecCCCchhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEE
Q 013976          153 VTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLA  231 (432)
Q Consensus       153 v~~l~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~  231 (432)
                      ...+|+++|+..+.+++++++.||++| ++|+.+.+.+.+++.++.+++.|+.+|++.   ++.+++.|+|.+.  |+++
T Consensus         2 ~i~lt~~~f~~~i~~~k~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~~vd~~~---~~~~~~~~~V~~~--Pt~~   76 (105)
T d1nw2a_           2 TMTLTDANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDE---NPETTSQFGIMSI--PTLI   76 (105)
T ss_dssp             CEEECTTTHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTT---CHHHHHHTTCCBS--SEEE
T ss_pred             EEEECHHHHHHHHhCCCcEEEEEECCCCCCcccccchhhhhhhhcCCceEEEEEECCC---CcccHHHCCccee--eEEE
Confidence            467899999999998888999999999 999999999999999999999999999998   6699999999998  9999


Q ss_pred             EEeCCCCceecCCCCCCHHHHHHHHHHHh
Q 013976          232 YTGNDDAKKHILDGELTLDKIKTFGEDFL  260 (432)
Q Consensus       232 i~~~~~~~~y~~~~~~~~~~i~~fi~~~~  260 (432)
                      ++.++. ....+.|..+.+.|.++|++++
T Consensus        77 ~~~~G~-~~~~~~G~~~~~~l~~~i~~~L  104 (105)
T d1nw2a_          77 LFKGGE-PVKQLIGYQPKEQLEAQLADVL  104 (105)
T ss_dssp             EEETTE-EEEEEESCCCHHHHHHHTTTTC
T ss_pred             EEECCE-EEEEEECCCCHHHHHHHHHHHh
Confidence            997543 4556789999999999998875

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=99.39  E-value=6.1e-13  Score=100.05  Aligned_cols=102  Identities=18%  Similarity=0.263  Sum_probs=88.4

Q ss_pred             eeecCCCchhhhc-cCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEE
Q 013976          153 VTIFTRENAPSVF-ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVL  230 (432)
Q Consensus       153 v~~l~~~~~~~~~-~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i  230 (432)
                      |.++++++|+..+ .+++++++.||++| ++|+.+.+.+.+++.++.+++.++.+|++.   ++.+++.|||+++  |++
T Consensus         1 v~el~d~~f~~~v~~~~~~vlv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~~v~~d~---~~~l~~~~~V~~~--Pt~   75 (104)
T d1fb6a_           1 VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDE---APGIATQYNIRSI--PTV   75 (104)
T ss_dssp             CEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTT---CHHHHHHTTCCSS--SEE
T ss_pred             CeECchhhHHHHHHcCCCcEEEEEEcCccCCccccCchhHHHHHhhcCccceeEEeccc---chhhhhhcceeee--eEE
Confidence            5689999998855 55666788899999 999999999999999999999999999998   6799999999999  999


Q ss_pred             EEEeCCCCceecCCCCCCHHHHHHHHHHHh
Q 013976          231 AYTGNDDAKKHILDGELTLDKIKTFGEDFL  260 (432)
Q Consensus       231 ~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~  260 (432)
                      +++.++ .....+.|..+.+.|.+|+++++
T Consensus        76 ~~~~~G-~~v~~~~G~~~~~~l~~~i~~~L  104 (104)
T d1fb6a_          76 LFFKNG-ERKESIIGAVPKSTLTDSIEKYL  104 (104)
T ss_dssp             EEEETT-EEEEEEEECCCHHHHHHHHHHHC
T ss_pred             EEEEcC-eEEEEEeCCCCHHHHHHHHHHhC
Confidence            998654 34456789899999999999875

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.38  E-value=9.7e-14  Score=118.50  Aligned_cols=133  Identities=20%  Similarity=0.284  Sum_probs=99.4

Q ss_pred             HHHHHHhcCCcCccccCCCCCCCCCCceEEEe-cccchhhhhcCC--CcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCC
Q 013976          254 TFGEDFLEGKLKPFFKSDPIPETNDGDVKIVV-GNNFDEIVLDES--KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVD  330 (432)
Q Consensus       254 ~fi~~~~~g~l~~~~~se~~p~~~~~~v~~l~-~~~~~~~~~~~~--~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~  330 (432)
                      +|++.+...++....+.... ...-|.|..|+ +++|.+.+.+.+  ..|+|.||++||++|+.+.+.|.+||..|..  
T Consensus        75 ~~l~~~r~~Rl~el~~~~~~-~~~~G~v~~i~~~~~f~~~v~~~~~~~~Vvvhfy~~~~~~C~~~~~~l~~lA~~~~~--  151 (217)
T d2trcp_          75 GCLRKYRRQCMQDMHQKLSF-GPRYGFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYPM--  151 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHHCC-CCCCCSEEECCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTCTT--
T ss_pred             HHHHHHHHHHHHHHHHHHhc-cccCCeEEEcCCHHHHHHHHHhcCCCCeEEEEEEcCCCCChhhhhhhHHHHhhhccc--
Confidence            35666655555443221111 11247798886 478999886544  4689999999999999999999999998865  


Q ss_pred             CEEEEEEeCCCccc-ccCCCCCCceEEEEeCCCcccCceecc---C-CCCHHHHHHHHHhcCCCC
Q 013976          331 SIVIAKMDGTTNEH-HRAKSDGFPTILFFPAGNKSFDPINVD---V-DRTVVALYKFLKKNASIP  390 (432)
Q Consensus       331 ~~~~~~id~~~~~~-~~~~i~~~P~i~~~~~g~~~~~~~~y~---g-~~~~~~l~~fi~~~~~~~  390 (432)
                       +.|++||++.++. ..|.+.++||+++|++|..+.+.+.+.   | ..+.+.|..||.++.-.+
T Consensus       152 -vkF~ki~~~~~~~~~~~~i~~lPtl~~yk~G~~v~~~vg~~~~~g~~~~~~~lE~~L~~~g~l~  215 (217)
T d2trcp_         152 -VKFCKIRASNTGAGDRFSSDVLPTLLVYKGGELISNFISVAEQFAEDFFAADVESFLNEYGLLP  215 (217)
T ss_dssp             -SEEEEEEHHHHTCSTTSCGGGCSEEEEEETTEEEEEETTGGGGSCSSCCHHHHHHHHHTTTCSC
T ss_pred             -ceEEEEccccchhHHhCCCCCCCeEEEEECCEEEEEEECccccccccCCHHHHHHHHHHcCCCC
Confidence             9999999887655 789999999999999998775333332   2 467899999999987654

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=99.37  E-value=1.8e-12  Score=98.19  Aligned_cols=104  Identities=19%  Similarity=0.282  Sum_probs=90.3

Q ss_pred             ceeecCCCchhh-hccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcE
Q 013976          152 LVTIFTRENAPS-VFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKV  229 (432)
Q Consensus       152 ~v~~l~~~~~~~-~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~  229 (432)
                      .|.++|.++|+. +...+++++|.||++| ++|+.+.+.+.++|.++.+++.++.+|+++   ++.++..||+.+.  |+
T Consensus         3 ~v~~lt~~~f~~~v~~~~~~v~v~F~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~vd~d~---~~~l~~~~~v~~~--PT   77 (108)
T d2trxa_           3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQ---NPGTAPKYGIRGI--PT   77 (108)
T ss_dssp             TEEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTT---CTTHHHHTTCCSS--SE
T ss_pred             CceECCHHHHHHHHHhCCCcEEEEEECCCCCCccccCcHHHHHHHHhhcceeeeeccccc---hhhHHHHhCCCcE--EE
Confidence            478899999987 4566677788899999 999999999999999999999999999987   6699999999998  99


Q ss_pred             EEEEeCCCCceecCCCCCCHHHHHHHHHHHhc
Q 013976          230 LAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  261 (432)
Q Consensus       230 i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  261 (432)
                      ++++.++ .....+.|.++.+.|.+||+..++
T Consensus        78 ~~~~~~G-~~v~~~~G~~~~~~l~~~i~~~Ls  108 (108)
T d2trxa_          78 LLLFKNG-EVAATKVGALSKGQLKEFLDANLA  108 (108)
T ss_dssp             EEEEETT-EEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             EEEEECC-EEEEEEeCCCCHHHHHHHHHHhcC
Confidence            9988654 345567899999999999998763

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.37  E-value=7.1e-13  Score=100.22  Aligned_cols=103  Identities=20%  Similarity=0.256  Sum_probs=88.9

Q ss_pred             eeecCCCchhhh-ccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEE
Q 013976          153 VTIFTRENAPSV-FESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVL  230 (432)
Q Consensus       153 v~~l~~~~~~~~-~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i  230 (432)
                      +..+|.++|++. ..+++++++.||++| ++|+.+.+.+.+++.++.+++.|+.+|++.   ++.+++.|+|++.  |++
T Consensus         3 ~~~i~~~~f~~~v~~s~kpvlv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~d~---~~~l~~~~~V~~~--Pt~   77 (107)
T d1dbya_           3 AGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDE---SPNVASEYGIRSI--PTI   77 (107)
T ss_dssp             CEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTT---CHHHHHHHTCCSS--CEE
T ss_pred             ceEecHHHHHHHHHhCCCcEEEEEECCCCCCccccChHHHHHHHhhcccceEEEEeccc---chhHHHHhcccce--EEE
Confidence            356788888775 456667788899999 999999999999999999999999999998   6789999999998  999


Q ss_pred             EEEeCCCCceecCCCCCCHHHHHHHHHHHhc
Q 013976          231 AYTGNDDAKKHILDGELTLDKIKTFGEDFLE  261 (432)
Q Consensus       231 ~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  261 (432)
                      +++.+++ ....+.|..+.+.|.+||+++++
T Consensus        78 ~~~~~G~-~v~~~~G~~~~~~l~~~i~~~L~  107 (107)
T d1dbya_          78 MVFKGGK-KCETIIGAVPKATIVQTVEKYLN  107 (107)
T ss_dssp             EEESSSS-EEEEEESCCCHHHHHHHHHHHCC
T ss_pred             EEEECCe-EEEEEeCCCCHHHHHHHHHHhhC
Confidence            9997543 55667899999999999999874

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.34  E-value=3.1e-12  Score=99.31  Aligned_cols=104  Identities=25%  Similarity=0.253  Sum_probs=87.6

Q ss_pred             CceeecCCCchhhhccCCCcceEEEEEeC-cc------hhhhHHHHHHHHHhccC-ceEEEEEecCCcccccchhhhhCC
Q 013976          151 PLVTIFTRENAPSVFESPIKNQLLLFAVS-ND------SEKLLPVFEEAAKSFKG-KLIFVYVQMDNEDVGKPVSEYFGI  222 (432)
Q Consensus       151 p~v~~l~~~~~~~~~~~~~~~~i~~~~~~-~~------~~~~~~~~~~~a~~~~~-~i~f~~vd~~~~~~~~~l~~~~~i  222 (432)
                      +.|.+++.+||+.++..+..++|+||++| ++      |+.+.+.+..+|+.+.+ .+.|+.|||..   ++.+|+.|+|
T Consensus        11 ~~V~~L~~~nf~~~l~~~~~~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~~~~~v~~a~Vd~~~---~~~l~~~~~I   87 (124)
T d1a8ya1          11 DRVINVNAKNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEK---DAAVAKKLGL   87 (124)
T ss_dssp             CCCEECCTTTHHHHHHHCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEETTT---SHHHHHTTTC
T ss_pred             CccEECCHHHHHHHHHhCCeEEEEEECCCccchhhhhHHHHHHHHHHHHHHHhccCCeEEEEEEeec---ccchhhcccc
Confidence            34789999999999888878899999999 54      45556677777777765 49999999998   5699999999


Q ss_pred             CCCCCcEEEEEeCCCCceecCCCCCCHHHHHHHHHHHhc
Q 013976          223 TGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  261 (432)
Q Consensus       223 ~~~~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  261 (432)
                      +++  |++.++.++  ....|.|.++.+.|.+|+.+.+.
T Consensus        88 ~~y--PTi~~f~~g--~~~~y~G~r~~~~l~~fi~~~l~  122 (124)
T d1a8ya1          88 TEE--DSIYVFKED--EVIEYDGEFSADTLVEFLLDVLE  122 (124)
T ss_dssp             CST--TCEEEEESS--SEEECCSCCSHHHHHHHHHHHHS
T ss_pred             ccC--CcEEEeccC--ccEEeeCCCCHHHHHHHHHHhcC
Confidence            999  999888755  56788999999999999999874

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=2.7e-12  Score=99.15  Aligned_cols=106  Identities=15%  Similarity=0.222  Sum_probs=92.3

Q ss_pred             CceeecCCCchhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccC---ceEEEEEecCCcccccchhhhhCCCCCC
Q 013976          151 PLVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG---KLIFVYVQMDNEDVGKPVSEYFGITGEA  226 (432)
Q Consensus       151 p~v~~l~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~---~i~f~~vd~~~~~~~~~l~~~~~i~~~~  226 (432)
                      ..|..++.++|...+..++.++|.||++| ++|+.+.+.|.+++..+.+   ++.++.+|++.   ++.+++.|+|.++ 
T Consensus         7 ~~V~~l~~~~f~~~l~~~k~vlV~Fya~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~---~~~l~~~~~i~~~-   82 (120)
T d1meka_           7 DHVLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATE---ESDLAQQYGVRGY-   82 (120)
T ss_dssp             TTEEECCTTTHHHHHHHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTT---CCSSHHHHTCCSS-
T ss_pred             CCeEEcCHHHHHHHHhcCCcEEEEEECCCcCCccccchhhhhhcccccccccceeeecccccc---chhHHHHhCCccC-
Confidence            35788999999999888888899999999 9999999999999999864   58999999998   5689999999998 


Q ss_pred             CcEEEEEeCCC-CceecCCCCCCHHHHHHHHHHHhc
Q 013976          227 PKVLAYTGNDD-AKKHILDGELTLDKIKTFGEDFLE  261 (432)
Q Consensus       227 ~P~i~i~~~~~-~~~y~~~~~~~~~~i~~fi~~~~~  261 (432)
                       |+++++.++. .....+.|.++.++|.+||++.+.
T Consensus        83 -Pt~~~~~~G~~~~~~~~~g~~~~~~l~~fi~~~~~  117 (120)
T d1meka_          83 -PTIKFFRNGDTASPKEYTAGREADDIVNWLKKRTG  117 (120)
T ss_dssp             -SEEEEEESSCSSSCEECCCCSSHHHHHHHHHTTSC
T ss_pred             -CeEEEEECCeEeeeEEecCCCCHHHHHHHHHHhhC
Confidence             9998887654 345678999999999999998653

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.24  E-value=3.3e-11  Score=92.95  Aligned_cols=109  Identities=12%  Similarity=0.054  Sum_probs=89.4

Q ss_pred             CceeecCCCchhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhcc---CceEEEEEecCCc--ccccchhhhhCCCC
Q 013976          151 PLVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFK---GKLIFVYVQMDNE--DVGKPVSEYFGITG  224 (432)
Q Consensus       151 p~v~~l~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~---~~i~f~~vd~~~~--~~~~~l~~~~~i~~  224 (432)
                      |-+.+|+.+||+.++...+.++|.||++| .+|++  +.|.++|+.+.   ..+.++.|||...  ..++.++..|++..
T Consensus         2 ~g~v~L~~~nFd~~v~~~~~~lV~Fya~wC~~ck~--p~f~kla~~~~~~~~~v~ia~Vd~~~~~~~~n~~l~~~~~i~~   79 (122)
T d2c0ga2           2 TGCVDLDELSFEKTVERFPYSVVKFDIASPYGEKH--EAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKVDD   79 (122)
T ss_dssp             TTCEECCTTTHHHHHTTSSEEEEEEEESSCCSHHH--HHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTTCCT
T ss_pred             CceEEcChHhHHHHHhcCCcEEEEEECCCCCcccC--HHHHHHHHHHHHhCCCeEEEeccccccccccCHHHHHHhhccc
Confidence            34679999999999988878889999999 89995  88999998874   4699999999753  12678999999965


Q ss_pred             CCCcEEEEEeCCCC--ceecCCCCCCHHHHHHHHHHHhc
Q 013976          225 EAPKVLAYTGNDDA--KKHILDGELTLDKIKTFGEDFLE  261 (432)
Q Consensus       225 ~~~P~i~i~~~~~~--~~y~~~~~~~~~~i~~fi~~~~~  261 (432)
                      ...|++.++.++..  ..+.+.|.++.++|.+|+.+..+
T Consensus        80 ~~~PTi~~f~~g~~~~~~~~~~g~rt~~~l~~fv~~~~~  118 (122)
T d2c0ga2          80 KNFPSIFLFKGNADEYVQLPSHVDVTLDNLKAFVSANTP  118 (122)
T ss_dssp             TSCCEEEEESSSSSSEEECCTTSCCCHHHHHHHHHHHSS
T ss_pred             CCCCcEEEEeCCcccccccccCCCCCHHHHHHHHHHhcC
Confidence            44599999977653  35678899999999999998643

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.23  E-value=1.8e-11  Score=97.18  Aligned_cols=105  Identities=13%  Similarity=0.196  Sum_probs=87.6

Q ss_pred             CCceeecCCCchhhhc-cCCCcceEEEEEeC-cchhhhHHHHHHHHHhccC---ceEEEEEecCCcccccchhhhhCCCC
Q 013976          150 LPLVTIFTRENAPSVF-ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG---KLIFVYVQMDNEDVGKPVSEYFGITG  224 (432)
Q Consensus       150 ~p~v~~l~~~~~~~~~-~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~---~i~f~~vd~~~~~~~~~l~~~~~i~~  224 (432)
                      .+.|.+|+.++|+.++ ..+++++|+||++| ++|+.+.+.|.++|..|.+   .+.++.+|+..     .+|+.|+|++
T Consensus        11 ~~~V~~l~~~nf~~~v~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~~~~~v~~~~~d~~~-----~~~~~~~v~~   85 (140)
T d2b5ea1          11 DSSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTE-----NDVRGVVIEG   85 (140)
T ss_dssp             SCSEEEECTTTHHHHHHCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGG-----CCCSSCCCSS
T ss_pred             CCCcEEecCcCHHHHHhcCCCCEEEEEEeccCcccchhHHHHHHHHHHHhccccceEEEeeeccc-----hhcccccccc
Confidence            4579999999999976 45667788999999 9999999999999999874   47777777754     5689999998


Q ss_pred             CCCcEEEEEeCCC-CceecCCCCCCHHHHHHHHHHHhc
Q 013976          225 EAPKVLAYTGNDD-AKKHILDGELTLDKIKTFGEDFLE  261 (432)
Q Consensus       225 ~~~P~i~i~~~~~-~~~y~~~~~~~~~~i~~fi~~~~~  261 (432)
                      +  |++.++..++ .....|.|.++.+.|.+||.+...
T Consensus        86 ~--Ptl~~f~~g~~~~~~~y~G~~t~~~l~~fi~~~~~  121 (140)
T d2b5ea1          86 Y--PTIVLYPGGKKSESVVYQGSRSLDSLFDFIKENGH  121 (140)
T ss_dssp             S--SEEEEECCTTSCCCCBCCSCCCHHHHHHHHHHHCT
T ss_pred             C--CeEEEEECCEEcceeEeCCCCCHHHHHHHHHHcCC
Confidence            8  9999987654 345678999999999999998643

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.18  E-value=2.3e-11  Score=92.32  Aligned_cols=102  Identities=23%  Similarity=0.283  Sum_probs=82.9

Q ss_pred             eeec-CCCchhhhc----cCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCC
Q 013976          153 VTIF-TRENAPSVF----ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEA  226 (432)
Q Consensus       153 v~~l-~~~~~~~~~----~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~  226 (432)
                      |..+ +.++++..+    .+++++++.||++| ++|+.+.+.|++++.++.+++.|+.+|+++   ++.+++.|+++.. 
T Consensus         4 v~~i~t~~~fd~~l~~~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~---~~~l~~~~~v~~~-   79 (112)
T d1ep7a_           4 VIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDA---VAAVAEAAGITAM-   79 (112)
T ss_dssp             EEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTT---THHHHHHHTCCBS-
T ss_pred             EEEEeCHHHHHHHHHHHhhcCCeEEEEEEcCCcCCCcccchhhhhhhhcccceEEEEEeeccc---cccccccccccCC-
Confidence            3444 445555544    35567888899999 999999999999999999999999999988   6799999999998 


Q ss_pred             CcEEEEEeCCCCceecCCCCCCHHHHHHHHHHHhc
Q 013976          227 PKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  261 (432)
Q Consensus       227 ~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  261 (432)
                       |+++++.++. ....+.| .+.+.|.+||+++.+
T Consensus        80 -Pt~~~~~~G~-~v~~~~G-~~~~~l~~~i~k~~a  111 (112)
T d1ep7a_          80 -PTFHVYKDGV-KADDLVG-ASQDKLKALVAKHAA  111 (112)
T ss_dssp             -SEEEEEETTE-EEEEEES-CCHHHHHHHHHHHHC
T ss_pred             -CEEEEEECCE-EEEEEeC-cCHHHHHHHHHHHhC
Confidence             9999887553 4455667 689999999999864

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.13  E-value=5.3e-11  Score=90.28  Aligned_cols=105  Identities=14%  Similarity=0.130  Sum_probs=86.2

Q ss_pred             CCCceeec-CCCchhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCC
Q 013976          149 KLPLVTIF-TRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEA  226 (432)
Q Consensus       149 ~~p~v~~l-~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~  226 (432)
                      ..|.+.++ +.+++..++..+...++.||++| ++|+.+.+.|.++|.++.+ +.|+.+|+++   ++.+++.||+.+. 
T Consensus         6 ~~p~vi~i~s~~~~~~~~~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~-v~~~~vd~d~---~~~l~~~~~V~~~-   80 (113)
T d1r26a_           6 RYPSVVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFPT-VKFAKVDADN---NSEIVSKCRVLQL-   80 (113)
T ss_dssp             CCSCCEEECCHHHHHHHHHSSSCEEEEEECTTCHHHHHTHHHHHHHHHHCTT-SEEEEEETTT---CHHHHHHTTCCSS-
T ss_pred             CCCceEEeCCHHHHHHHHcCCCeEEEEEECCCCccchhhceecccccccccc-cccccccccc---chhhHHHccccCC-
Confidence            35555555 66778888888877888899999 9999999999999999975 9999999988   6799999999998 


Q ss_pred             CcEEEEEeCCCCceecCCCCCCHHHHHHHHHHHhc
Q 013976          227 PKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  261 (432)
Q Consensus       227 ~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  261 (432)
                       |+++++.+++ ....+.| .+.+.+.++|++++.
T Consensus        81 -Pt~~~~~~G~-~v~~~~G-~~~~~l~~~l~~~ik  112 (113)
T d1r26a_          81 -PTFIIARSGK-MLGHVIG-ANPGMLRQKLRDIIK  112 (113)
T ss_dssp             -SEEEEEETTE-EEEEEES-SCHHHHHHHHHHHHH
T ss_pred             -CEEEEEECCE-EEEEEeC-CCHHHHHHHHHHHhc
Confidence             9999986553 3345567 578889999888764

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=99.12  E-value=2.6e-10  Score=87.11  Aligned_cols=103  Identities=14%  Similarity=0.151  Sum_probs=82.6

Q ss_pred             CceeecCCCchhhhc-cCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCc-----eEEEEEecCCcccccchhhhhCCC
Q 013976          151 PLVTIFTRENAPSVF-ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-----LIFVYVQMDNEDVGKPVSEYFGIT  223 (432)
Q Consensus       151 p~v~~l~~~~~~~~~-~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~-----i~f~~vd~~~~~~~~~l~~~~~i~  223 (432)
                      +.|..++.++|++.+ +++++++|.||++| ++|+.+.+.|.++|..+.+.     +.+...++..      .+..++|+
T Consensus         2 g~V~~lt~~nF~~~v~~~~k~vlV~fya~wC~~Ck~~~p~~~~la~~~~~~~~~~~~~~~~~~~~~------~~~~~~v~   75 (116)
T d2djja1           2 GPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATA------NDVPDEIQ   75 (116)
T ss_dssp             CSSEECCTTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTT------SCCSSCCS
T ss_pred             cCcEEcccCCHHHHHhcCCCCEEEEEEecccccccccchHHHHHHHHHhcccccceeEEEecccch------hhhccccc
Confidence            457899999999864 67778899999999 99999999999999999753     4555555443      35678998


Q ss_pred             CCCCcEEEEEeCCC-CceecCCCCCCHHHHHHHHHHHhc
Q 013976          224 GEAPKVLAYTGNDD-AKKHILDGELTLDKIKTFGEDFLE  261 (432)
Q Consensus       224 ~~~~P~i~i~~~~~-~~~y~~~~~~~~~~i~~fi~~~~~  261 (432)
                      ++  |++.++.++. .....+.|.++.++|.+||.+..+
T Consensus        76 ~~--Pti~~f~~g~~~~~~~~~g~~~~~~l~~fi~~~~~  112 (116)
T d2djja1          76 GF--PTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAENGK  112 (116)
T ss_dssp             SS--SEEEEECSSCTTSCCCCCCCSCHHHHHHHHHHTSS
T ss_pred             CC--CEEEEEECCccCceEEecCCCCHHHHHHHHHHccC
Confidence            88  9998886554 345668899999999999998543

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=99.12  E-value=1.7e-10  Score=87.27  Aligned_cols=105  Identities=15%  Similarity=0.191  Sum_probs=85.7

Q ss_pred             CCCceeecCCCchhhhccC--CCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCC
Q 013976          149 KLPLVTIFTRENAPSVFES--PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGE  225 (432)
Q Consensus       149 ~~p~v~~l~~~~~~~~~~~--~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~  225 (432)
                      ....+.+++.++|...+..  ++++++.||++| ++|+.+.+.|.++++++.+ +.|+.+|++..  ++.+++.|||++.
T Consensus         4 ~~g~v~~~~~d~f~~~l~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~-v~~~~vd~~~~--~~~l~~~~~V~~~   80 (112)
T d1f9ma_           4 IVGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLD-VIFLKLDCNQE--NKTLAKELGIRVV   80 (112)
T ss_dssp             CTTSEEEECTTTHHHHHHTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEECSST--THHHHHHHCCSSS
T ss_pred             cceeeEEeCHHHHHHHHHHcCCCEEEEEEEcCCCcchHHHHHHHhhhcccccc-ceeeccccccc--chhhHhheeeccC
Confidence            3456889999999987643  356777899999 9999999999999999987 78999999753  5789999999998


Q ss_pred             CCcEEEEEeCCCCceecCCCCCCHHHHHHHHHHHh
Q 013976          226 APKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFL  260 (432)
Q Consensus       226 ~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~  260 (432)
                        |+++++.+++ ....+.| .+.+.+.++|+...
T Consensus        81 --Pt~~~~k~G~-~v~~~~G-~~~~~l~e~i~~~~  111 (112)
T d1f9ma_          81 --PTFKILKENS-VVGEVTG-AKYDKLLEAIQAAR  111 (112)
T ss_dssp             --SEEEEEETTE-EEEEEES-SCHHHHHHHHHHHH
T ss_pred             --CEEEEEECCE-EEEEEeC-CCHHHHHHHHHHcc
Confidence              9999996543 3445667 47789999998754

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.02  E-value=4.5e-10  Score=84.36  Aligned_cols=100  Identities=9%  Similarity=0.033  Sum_probs=80.0

Q ss_pred             cCCCchhhhccCCCcceE-EEEEeC-cchhhhHHHHHHHHHh----ccCceEEEEEecCCcccccchhhhhCCCCCCCcE
Q 013976          156 FTRENAPSVFESPIKNQL-LLFAVS-NDSEKLLPVFEEAAKS----FKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKV  229 (432)
Q Consensus       156 l~~~~~~~~~~~~~~~~i-~~~~~~-~~~~~~~~~~~~~a~~----~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~  229 (432)
                      +++++...+...+++..+ +|+++| ++|+.+.+.+.++|..    +.+++.+..+|+.+   ++++++.|||.+.  |+
T Consensus         2 l~~~~~e~~~~~~~~v~i~~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~~---~~~l~~~~~V~~v--PT   76 (107)
T d1a8la2           2 LMDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIE---YPEWADQYNVMAV--PK   76 (107)
T ss_dssp             CCHHHHHHHTTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGG---CHHHHHHTTCCSS--CE
T ss_pred             CCHHHHHHHHhcCCCeEEEEEEcCccccchhhChhHHhhhhhhhhccCCcEEEEEecccc---ccccccccccccc--eE
Confidence            455666666666666655 488999 9999999999999865    44679999999987   6799999999998  99


Q ss_pred             EEEEeCCCCceecCCCCCCHHHHHHHHHHHhc
Q 013976          230 LAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  261 (432)
Q Consensus       230 i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  261 (432)
                      ++++.++. ....+.|..+.+.+.+|+.+.++
T Consensus        77 i~i~~~G~-~~~~~~G~~~~~~~~~~i~~al~  107 (107)
T d1a8la2          77 IVIQVNGE-DRVEFEGAYPEKMFLEKLLSALS  107 (107)
T ss_dssp             EEEEETTE-EEEEEESCCCHHHHHHHHHHHHC
T ss_pred             EEEEeCCe-EEEEEECCCCHHHHHHHHHHhhC
Confidence            98775543 45567899999999999998763

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.02  E-value=1.8e-10  Score=85.84  Aligned_cols=95  Identities=20%  Similarity=0.286  Sum_probs=79.3

Q ss_pred             CCCchhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeC
Q 013976          157 TRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGN  235 (432)
Q Consensus       157 ~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~  235 (432)
                      |.+.+..++.++..+++.||++| ++|+.+.+.+.++++++.+ +.|+.+|+++   ++++++.|+|.+.  |+++++.+
T Consensus         7 s~~~f~~~i~~~~~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~-~~~~~vd~d~---~~~~~~~~~V~~~--Pt~i~~k~   80 (103)
T d1syra_           7 SQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTK-MVFIKVDVDE---VSEVTEKENITSM--PTFKVYKN   80 (103)
T ss_dssp             SHHHHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTT---THHHHHHTTCCSS--SEEEEEET
T ss_pred             CHHHHHHHHhCCCcEEEEEeCCcccCcccccccchhhhhcccc-eEEEeecccc---Ccceeeeeeeecc--eEEEEEEC
Confidence            45567777777778888899999 9999999999999999976 7899999998   6689999999998  99999875


Q ss_pred             CCCceecCCCCCCHHHHHHHHHHH
Q 013976          236 DDAKKHILDGELTLDKIKTFGEDF  259 (432)
Q Consensus       236 ~~~~~y~~~~~~~~~~i~~fi~~~  259 (432)
                      +. ....+.| .+.+.|.+||+++
T Consensus        81 G~-~v~~~~G-~~~~~l~~~i~k~  102 (103)
T d1syra_          81 GS-SVDTLLG-ANDSALKQLIEKY  102 (103)
T ss_dssp             TE-EEEEEES-CCHHHHHHHHHTT
T ss_pred             CE-EEEEEeC-cCHHHHHHHHHhh
Confidence            43 3345667 5789999999875

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=4.3e-10  Score=84.21  Aligned_cols=96  Identities=8%  Similarity=0.127  Sum_probs=79.0

Q ss_pred             CCCchhhhccC--CCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEE
Q 013976          157 TRENAPSVFES--PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYT  233 (432)
Q Consensus       157 ~~~~~~~~~~~--~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~  233 (432)
                      |.+.|...+..  ++..++.||++| ++|+.+.+.|.++|+++.+ +.|+.+|+++   ++.+++.||+...  |+++++
T Consensus         8 s~~~f~~~l~~~~~klvvv~F~a~wC~~Ck~~~p~~~~la~~~~~-~~f~~vd~d~---~~~l~~~~~v~~~--Pt~~~~   81 (107)
T d1gh2a_           8 SDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQ-AVFLEVDVHQ---CQGTAATNNISAT--PTFQFF   81 (107)
T ss_dssp             SGGGHHHHHHHTTTSCEEEEEECSSCHHHHHHHHHHHHHHHHCTT-SEEEEEETTT---SHHHHHHTTCCSS--SEEEEE
T ss_pred             CHHHHHHHHHhCCCCEEEEEEECCCCCCccccchhhhcccccccc-cccccccccc---chhhhhhcCceec--eEEEEE
Confidence            55677765533  445566799999 9999999999999999987 8999999998   6799999999988  999999


Q ss_pred             eCCCCceecCCCCCCHHHHHHHHHHHh
Q 013976          234 GNDDAKKHILDGELTLDKIKTFGEDFL  260 (432)
Q Consensus       234 ~~~~~~~y~~~~~~~~~~i~~fi~~~~  260 (432)
                      .++. ....+.| .+.+.|.++|++++
T Consensus        82 ~~G~-~v~~~~G-~~~~~l~~~i~k~l  106 (107)
T d1gh2a_          82 RNKV-RIDQYQG-ADAVGLEEKIKQHL  106 (107)
T ss_dssp             ETTE-EEEEEES-SCHHHHHHHHHHHH
T ss_pred             ECCE-EEEEEeC-CCHHHHHHHHHHhh
Confidence            6553 4455677 58999999999876

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.01  E-value=4.2e-10  Score=85.48  Aligned_cols=97  Identities=19%  Similarity=0.196  Sum_probs=79.0

Q ss_pred             CCCchhhhc----cCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEE
Q 013976          157 TRENAPSVF----ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLA  231 (432)
Q Consensus       157 ~~~~~~~~~----~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~  231 (432)
                      |.++++..+    .+++++++.||++| ++|+.+.+.+.++++.+.+ +.|+.+|+++   ++.+++.|||++.  |+++
T Consensus        13 s~~~~~~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~-~~~~~vd~~~---~~~l~~~~~V~~~--Pt~~   86 (114)
T d1xfla_          13 TVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPN-VLFLKVDTDE---LKSVASDWAIQAM--PTFM   86 (114)
T ss_dssp             SHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCSS-EEEEEEETTT---SHHHHHHTTCCSS--SEEE
T ss_pred             CHHHHHHHHHHhhccCCeEEEEEEcCCCCCccccccchhhhcccccc-cceeEEEeee---ceeeccccceeee--EEEE
Confidence            555555433    44566778899999 9999999999999999987 8899999998   6799999999998  9999


Q ss_pred             EEeCCCCceecCCCCCCHHHHHHHHHHHhc
Q 013976          232 YTGNDDAKKHILDGELTLDKIKTFGEDFLE  261 (432)
Q Consensus       232 i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  261 (432)
                      ++.+++ ....+.| .+.+.|.+||+++++
T Consensus        87 ~~~~G~-~v~~~~G-~~~~~l~~~i~k~la  114 (114)
T d1xfla_          87 FLKEGK-ILDKVVG-AKKDELQSTIAKHLA  114 (114)
T ss_dssp             EEETTE-EEEEEES-CCHHHHHHHHHHHCC
T ss_pred             EEECCE-EEEEEeC-cCHHHHHHHHHHhhC
Confidence            886553 4445667 589999999999874

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

Probab=99.00  E-value=2.1e-10  Score=90.40  Aligned_cols=94  Identities=21%  Similarity=0.288  Sum_probs=65.5

Q ss_pred             cccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCcc----------------------
Q 013976          286 GNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE----------------------  343 (432)
Q Consensus       286 ~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~----------------------  343 (432)
                      +..+....+.+++++||.|||+||++|+..+|.+++++..     ++.+..++.+...                      
T Consensus         9 g~~~~~~~l~~Gk~vvl~FwatWC~pC~~e~p~l~~~~~~-----~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~   83 (136)
T d1z5ye1           9 GQFYQADVLTQGKPVLLNVWATWCPTSRAEHQYLNQLSAQ-----GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGD   83 (136)
T ss_dssp             TCEECHHHHHSSSCEEEEEECTTCHHHHHHHHHHHHHHHT-----TCCEEEEEESCCHHHHHHHHHHHCCCCSEEEEESS
T ss_pred             CcEecHHHHcCCCEEEEEEEcCcCCCcCccccchhhhhhh-----hhhhcccccccchhhhHHHHHHcCCccceeecccc
Confidence            3455544455789999999999999999999999998653     2333333333211                      


Q ss_pred             --c-ccCCCCCCceEEEE-eCCCcccCceeccCCCCHHHHHHHHHhcC
Q 013976          344 --H-HRAKSDGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNA  387 (432)
Q Consensus       344 --~-~~~~i~~~P~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  387 (432)
                        . ..+++.++|+.+++ ++|+.+.   .+.|..+.+.+.+.|++.+
T Consensus        84 ~~~~~~~~v~~~P~~~liD~~G~i~~---~~~G~~~~~~l~~~i~~ll  128 (136)
T d1z5ye1          84 GMLGLDLGVYGAPETFLIDGNGIIRY---RHAGDLNPRVWEEEIKPLW  128 (136)
T ss_dssp             CHHHHHHTCCSBSEEEEECTTSCEEE---EEESCCCHHHHHHHTHHHH
T ss_pred             hhHHHhcccCCcceEEEEcCCCEEEE---EEEcCCCHHHHHHHHHHHH
Confidence              0 24589999999999 5565543   6788888887777666543

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.00  E-value=5.2e-10  Score=84.55  Aligned_cols=102  Identities=14%  Similarity=0.189  Sum_probs=81.2

Q ss_pred             CceeecCC-Cchhhhc--cCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCC
Q 013976          151 PLVTIFTR-ENAPSVF--ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEA  226 (432)
Q Consensus       151 p~v~~l~~-~~~~~~~--~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~  226 (432)
                      ..+.++.. +++...+  .+++++++.||++| ++|+.+.+.+++++.++.+.+.++.+|+++   ++.+++.|+|+.. 
T Consensus         5 ~~v~~i~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~i~~d~---~~~l~~~~~V~~~-   80 (111)
T d1xwaa_           5 AMVYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDE---CEDIAMEYNISSM-   80 (111)
T ss_dssp             CCEEECCSHHHHHHHHHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTT---CHHHHHHTTCCSS-
T ss_pred             CeEEEECCHHHHHHHHHhcCCCEEEEEEECCcccCccccchhHHHHhhhcccceEEEEEEeec---CcchhhcCCCccc-
Confidence            34555543 5566544  34567778899999 999999999999999999999999999998   6689999999998 


Q ss_pred             CcEEEEEeCCCCceecCCCCCCHHHHHHHHHHH
Q 013976          227 PKVLAYTGNDDAKKHILDGELTLDKIKTFGEDF  259 (432)
Q Consensus       227 ~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~  259 (432)
                       |+++++.++. ....+.| .+.+.|.+||+..
T Consensus        81 -Pt~~~~~~G~-~v~~~~G-~~~~~l~~~I~~~  110 (111)
T d1xwaa_          81 -PTFVFLKNGV-KVEEFAG-ANAKRLEDVIKAN  110 (111)
T ss_dssp             -SEEEEEETTE-EEEEEES-CCHHHHHHHHHHT
T ss_pred             -cEEEEEECCE-EEEEEeC-CCHHHHHHHHHhc
Confidence             9999886553 3455666 4678899999864

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=3.7e-10  Score=88.73  Aligned_cols=77  Identities=18%  Similarity=0.478  Sum_probs=58.0

Q ss_pred             cchhhh---hcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc-c--cCCCCCCceEEEE-eC
Q 013976          288 NFDEIV---LDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-H--RAKSDGFPTILFF-PA  360 (432)
Q Consensus       288 ~~~~~~---~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-~--~~~i~~~P~i~~~-~~  360 (432)
                      +|++.+   ...+++++|.|||+||++|+.+.+.+.++........++.++.+|++.... .  ......+|+++++ ++
T Consensus        13 ~~~~al~~A~~~~Kpvlv~F~a~wC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~~~~~Pt~~~~d~~   92 (135)
T d1sena_          13 TLEDGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGGYIPRILFLDPS   92 (135)
T ss_dssp             CHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGSCSCGGGCTTCSCSSEEEEECTT
T ss_pred             EHHHHHHHHHHcCCcEEEEEEecCCCCceecchhhhhhHHHHHhcCCcEEEeCCCCcCHHHHHHHhhcccceeEEEECCC
Confidence            454433   345799999999999999999999998777654433479999999877655 2  3455678999999 56


Q ss_pred             CCcc
Q 013976          361 GNKS  364 (432)
Q Consensus       361 g~~~  364 (432)
                      |...
T Consensus        93 G~~~   96 (135)
T d1sena_          93 GKVH   96 (135)
T ss_dssp             SCBC
T ss_pred             CeEE
Confidence            6654

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.98  E-value=9.6e-10  Score=86.22  Aligned_cols=99  Identities=19%  Similarity=0.262  Sum_probs=70.7

Q ss_pred             eEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc----------------
Q 013976          281 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH----------------  344 (432)
Q Consensus       281 v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~----------------  344 (432)
                      ++.++++++.-.-. .++++||.||++||++|+...|.+.++++.+++   +.++.++......                
T Consensus        10 ~~~~~G~~~~l~~~-~Gk~vll~fwa~wC~~C~~~~p~l~~l~~~~~~---~~~v~v~~~d~~~~~~~~~~~~~~~~~~~   85 (134)
T d1zzoa1          10 AKTLDGHDFHGESL-LGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPE---VTFVGVAGLDQVPAMQEFVNKYPVKTFTQ   85 (134)
T ss_dssp             EEBTTSCEEEGGGG-TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT---SEEEEEECSSCHHHHHHHHHHTTCTTSEE
T ss_pred             EEcCCCCEEeHHHh-CCCEEEEEecccccCcccccchhhHHHHhhhcc---cccccccccccchhHHHHHHhcCCcceeE
Confidence            44445544433222 468999999999999999999999999999875   4444444432110                


Q ss_pred             ---------ccCCCCCCceEEEEeCCCcccCceeccCCCCHHHHHHHHHhc
Q 013976          345 ---------HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKN  386 (432)
Q Consensus       345 ---------~~~~i~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~  386 (432)
                               ..+++.++|+.+++.....+.   .+.|..+.+.|.+.|++.
T Consensus        86 l~D~~~~~~~~~~v~~~P~~~iiD~~G~i~---~~~g~~~~~~l~~~i~~L  133 (134)
T d1zzoa1          86 LADTDGSVWANFGVTQQPAYAFVDPHGNVD---VVRGRMSQDELTRRVTAL  133 (134)
T ss_dssp             EECTTCHHHHHTTCCSSSEEEEECTTCCEE---EEESCCCHHHHHHHHHHH
T ss_pred             EeeccchHHHhcCCCccCeEEEECCCCeEE---EEECCCCHHHHHHHHHhh
Confidence                     245899999999995444442   457889999999999875

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.98  E-value=6.4e-10  Score=79.65  Aligned_cols=82  Identities=15%  Similarity=0.112  Sum_probs=70.2

Q ss_pred             CcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCceecCCCCC
Q 013976          169 IKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGEL  247 (432)
Q Consensus       169 ~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~~  247 (432)
                      +..+++||++| ++|+.+.+.+.+++..+.+.+.+..+|+++   ++++++.|||++.  |+++++..+     .+.|..
T Consensus         3 kv~v~~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~d~---~~~la~~~~V~~~--Pt~~i~~~g-----~~~G~~   72 (85)
T d1fo5a_           3 KVKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVME---NPQKAMEYGIMAV--PTIVINGDV-----EFIGAP   72 (85)
T ss_dssp             CEEEEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSS---SCCTTTSTTTCCS--SEEEETTEE-----ECCSSS
T ss_pred             ceEEEEEECCCCcChHhhhhhccccccccccccccccccccc---cccccccCCceEe--eEEEEECCc-----EEECCC
Confidence            34567889999 999999999999999999999999999987   6689999999998  999765322     356888


Q ss_pred             CHHHHHHHHHHHh
Q 013976          248 TLDKIKTFGEDFL  260 (432)
Q Consensus       248 ~~~~i~~fi~~~~  260 (432)
                      +.+.|.+||++++
T Consensus        73 ~~~~l~~~i~~~L   85 (85)
T d1fo5a_          73 TKEALVEAIKKRL   85 (85)
T ss_dssp             SSHHHHHHHHHHC
T ss_pred             CHHHHHHHHHhcC
Confidence            9999999999864

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=98.97  E-value=4.7e-10  Score=85.05  Aligned_cols=93  Identities=18%  Similarity=0.170  Sum_probs=76.8

Q ss_pred             hhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCc
Q 013976          161 APSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAK  239 (432)
Q Consensus       161 ~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~  239 (432)
                      +......+++++|.||++| ++|+.+.+.|.++++++.+ +.|+.+|+++   ++.++..|+|++.  |+++++.++. .
T Consensus        19 l~~~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~vd~d~---~~~l~~~~~I~~~--Pt~~~~k~G~-~   91 (113)
T d1ti3a_          19 FEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPN-VTFLKVDVDE---LKAVAEEWNVEAM--PTFIFLKDGK-L   91 (113)
T ss_dssp             HHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCSS-EEEEEEETTT---CHHHHHHHHCSST--TEEEEEETTE-E
T ss_pred             HHHHHcCCCEEEEEEEcCccccchhhhhhhhhhhccCCC-ceEEeeeeec---cccccccCeeccc--ceEEEEECCE-E
Confidence            3344456667788899999 9999999999999999976 8899999988   6799999999998  9999997553 3


Q ss_pred             eecCCCCCCHHHHHHHHHHHhc
Q 013976          240 KHILDGELTLDKIKTFGEDFLE  261 (432)
Q Consensus       240 ~y~~~~~~~~~~i~~fi~~~~~  261 (432)
                      ...+.| .+.+.|.+||.++.+
T Consensus        92 v~~~~G-~~~~~l~~~i~k~as  112 (113)
T d1ti3a_          92 VDKTVG-ADKDGLPTLVAKHAT  112 (113)
T ss_dssp             EEEEEC-CCTTHHHHHHHHHHH
T ss_pred             EEEEcC-CCHHHHHHHHHHHhC
Confidence            344556 688999999998754

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=5.1e-10  Score=83.64  Aligned_cols=95  Identities=12%  Similarity=0.207  Sum_probs=76.5

Q ss_pred             CCchhhhccC--CCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEe
Q 013976          158 RENAPSVFES--PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTG  234 (432)
Q Consensus       158 ~~~~~~~~~~--~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~  234 (432)
                      .+.+...+..  ++++++.||++| ++|+.+.+.+.++++.+.+ +.|+.+|+++   ++.+++.+++++.  |+++++.
T Consensus         8 ~~~f~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~~~~l~~~~~~-~~~~~vd~d~---~~~~~~~~~V~~~--Pt~~~~~   81 (105)
T d2ifqa1           8 KTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN-VIFLEVDVDD---CQDVASECEVKCM--PTFQFFK   81 (105)
T ss_dssp             HHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTT---CHHHHHHTTCCBS--SEEEEEE
T ss_pred             HHHHHHHHHhCCCCEEEEEEEcCCccchhhhhhhhhhhcccccc-ceeeeccccc---CHhHHHHcCceEE--EEEEEEE
Confidence            3455555532  445677799999 9999999999999999977 6799999998   6799999999998  9999997


Q ss_pred             CCCCceecCCCCCCHHHHHHHHHHHh
Q 013976          235 NDDAKKHILDGELTLDKIKTFGEDFL  260 (432)
Q Consensus       235 ~~~~~~y~~~~~~~~~~i~~fi~~~~  260 (432)
                      ++. ....+.| .+.+.|.++|++++
T Consensus        82 ~G~-~v~~~~G-~~~~~l~~~i~~~l  105 (105)
T d2ifqa1          82 KGQ-KVGEFSG-ANKEKLEATINELV  105 (105)
T ss_dssp             TTE-EEEEEES-CCHHHHHHHHHHHC
T ss_pred             CCE-EEEEEeC-CCHHHHHHHHHhhC
Confidence            553 3445667 58899999999864

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.92  E-value=1.2e-09  Score=78.15  Aligned_cols=79  Identities=13%  Similarity=0.103  Sum_probs=68.6

Q ss_pred             eEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCceecCCCCCCHH
Q 013976          172 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLD  250 (432)
Q Consensus       172 ~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~~~~~  250 (432)
                      +.+||++| ++|+.+.+.|++++.++.+++.|+.+|+++   ++++++.|||.+.  |++++.  +.   ..+.|..+.+
T Consensus         5 v~~F~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~---~~~l~~~~~V~~~--Pt~~~~--~~---~~~~G~~~~~   74 (85)
T d1nhoa_           5 IEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMV---DREKAIEYGLMAV--PAIAIN--GV---VRFVGAPSRE   74 (85)
T ss_dssp             EEEESCSSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTT---CGGGGGGTCSSCS--SEEEET--TT---EEEECSSCCH
T ss_pred             EEEEECCCCcchHHHHHHHhhhccccccccccccccccc---chhhHHhcCceEe--CEEEEC--Cc---EEEEcCCCHH
Confidence            55688999 999999999999999999999999999988   6799999999998  998662  22   2356889999


Q ss_pred             HHHHHHHHHh
Q 013976          251 KIKTFGEDFL  260 (432)
Q Consensus       251 ~i~~fi~~~~  260 (432)
                      .|.+||++.+
T Consensus        75 ~l~~~i~~~l   84 (85)
T d1nhoa_          75 ELFEAINDEM   84 (85)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhh
Confidence            9999999865

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=98.92  E-value=3.4e-09  Score=84.03  Aligned_cols=88  Identities=15%  Similarity=0.234  Sum_probs=68.4

Q ss_pred             CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc------------------------------c
Q 013976          296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------------------------------H  345 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~------------------------------~  345 (432)
                      ++++++|.|||+||++|+...|.+.++.+.++.. ++.+..+.......                              .
T Consensus        22 ~gk~vvl~F~a~wC~~C~~~~~~l~~l~~~~~~~-~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  100 (143)
T d2fy6a1          22 KDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFS-SANLITVASPGFLHEKKDGDFQKWYAGLNYPKLPVVTDNGGTIAQ  100 (143)
T ss_dssp             TTSCEEEEEECTTCHHHHTTHHHHHHHHHCGGGT-TSEEEEEECTTSTTCCCTTHHHHHHTTSCCTTSCEEECTTCHHHH
T ss_pred             CCCEEEEEEECCCCccccccCcchhhhhhhhccC-CcEEEEEeeeecccccchhhhhhhhhhcCCcccccccccchHHHH
Confidence            4689999999999999999999999999988754 56665555432110                              2


Q ss_pred             cCCCCCCceEEEE-eCCCcccCceeccCCCCHHHHHHHHHhcC
Q 013976          346 RAKSDGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNA  387 (432)
Q Consensus       346 ~~~i~~~P~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  387 (432)
                      .|++.++|+++++ ++|+.+.   .+.|..+.+.|.++|++..
T Consensus       101 ~~~v~~~P~~~liD~~G~i~~---~~~G~~~~~~~~~~l~~~~  140 (143)
T d2fy6a1         101 SLNISVYPSWALIGKDGDVQR---IVKGSINEAQALALIRDPN  140 (143)
T ss_dssp             HTTCCSSSEEEEECTTSCEEE---EEESCCCHHHHHHHHHCTT
T ss_pred             HcCCCccCEEEEECCCCEEEE---EEECCCCHHHHHHHHHHHh
Confidence            4588899999999 6665443   6779999999999998754

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

Probab=98.91  E-value=8e-09  Score=81.75  Aligned_cols=100  Identities=14%  Similarity=0.215  Sum_probs=72.8

Q ss_pred             ceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc---------------
Q 013976          280 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH---------------  344 (432)
Q Consensus       280 ~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~---------------  344 (432)
                      ....++++...... .++++++|.||++||++|+...|.+.++...+++  .+.++.++....+.               
T Consensus        13 ~~~~~ng~~~~~~~-~~~k~vvl~f~a~~C~~C~~~~p~l~~l~~~~~~--~~~~i~v~~~~~~~~~~~~~~~~~~~~~~   89 (143)
T d2b5xa1          13 EKAWLNGEVTREQL-IGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQD--QLNVVAVHMPRSEDDLDPGKIKETAAEHD   89 (143)
T ss_dssp             CSEEESCCCCHHHH-TTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT--TSEEEEEECCCSTTTSSHHHHHHHHHHTT
T ss_pred             CccCcCCeEecHHH-hCCCEEEEEEEcCCCcchhhhhhhhhhhhhhhhc--cccceeEEeeccccccchhhhhhHHHhhc
Confidence            34445655444332 4568999999999999999999999999999987  46666665432110               


Q ss_pred             --------------ccCCCCCCceEEEE-eCCCcccCceeccCCCCHHHHHHHHHh
Q 013976          345 --------------HRAKSDGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKK  385 (432)
Q Consensus       345 --------------~~~~i~~~P~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~  385 (432)
                                    ..+++.++|+++++ ++|..+.   .+.|..+.+.|.+.|++
T Consensus        90 ~~~p~~~D~~~~~~~~~~v~~~P~~~~id~~G~i~~---~~~G~~~~~~l~~~l~~  142 (143)
T d2b5xa1          90 ITQPIFVDSDHALTDAFENEYVPAYYVFDKTGQLRH---FQAGGSGMKMLEKRVNR  142 (143)
T ss_dssp             CCSCEEECSSCHHHHHTCCCCSSEEEEECTTCBEEE---EEESCSTTHHHHHHHHH
T ss_pred             cCccccccCccchHHHcCCCcCCEEEEECCCCEEEE---EEECCCCHHHHHHHHHh
Confidence                          13588899999999 5565443   67788888888888775

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.90  E-value=3.7e-10  Score=86.94  Aligned_cols=102  Identities=10%  Similarity=0.003  Sum_probs=77.9

Q ss_pred             eeecCCCchhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccC--c-----eEEEEEecCCcccccchhhhhCCCC
Q 013976          153 VTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG--K-----LIFVYVQMDNEDVGKPVSEYFGITG  224 (432)
Q Consensus       153 v~~l~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~--~-----i~f~~vd~~~~~~~~~l~~~~~i~~  224 (432)
                      +.+|+.+||++++..++.++|.||++| ..|.  .+.++++|+.+.+  .     |.++.+||..   ++.++..++++.
T Consensus         6 ~v~L~~~nFd~~i~~~~~~lV~F~~~wc~~~~--~~~~~~la~~~~~~~~~~~~~V~~~~vd~~~---n~~l~~~~~~~I   80 (122)
T d1g7ea_           6 ALPLDTVTFYKVIPKSKFVLVKFDTQYPYGEK--QDEFKRLAENSASSDDLLVAEVGISDYGDKL---NMELSEKYKLDK   80 (122)
T ss_dssp             SCSCSHHHHHHHGGGSSEEEEEEECSSCCTTT--THHHHHHHHHGGGCSSEEEEEEESCCTTSCH---HHHHHHHHTCSS
T ss_pred             eEECCHHhHHHHHhhCCeEEEEEecCCcCccc--CHHHHHHHHHHHHHHHHhhhccceeeccccc---cHHHHHhhcccc
Confidence            678999999999998888889999999 4553  3678888888874  2     3344445554   668888887543


Q ss_pred             CCCcEEEEEeCCC-CceecCCCCCCHHHHHHHHHHH
Q 013976          225 EAPKVLAYTGNDD-AKKHILDGELTLDKIKTFGEDF  259 (432)
Q Consensus       225 ~~~P~i~i~~~~~-~~~y~~~~~~~~~~i~~fi~~~  259 (432)
                      ...|+|.++.++. .....|.|.++.++|.+||++.
T Consensus        81 ~~yPTi~~f~~G~~~~~~~y~G~rt~~~l~~fi~~~  116 (122)
T d1g7ea_          81 ESYPVFYLFRDGDFENPVPYSGAVKVGAIQRWLKGQ  116 (122)
T ss_dssp             SSCEEEEEEESSCCCCCEEEESCCCHHHHHHHHHTT
T ss_pred             cCCCeEEEEecCcccCceecCCCCCHHHHHHHHHhc
Confidence            3349999998765 3456789999999999999883

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.85  E-value=4.5e-09  Score=82.22  Aligned_cols=101  Identities=20%  Similarity=0.312  Sum_probs=71.2

Q ss_pred             eEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc----------------
Q 013976          281 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH----------------  344 (432)
Q Consensus       281 v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~----------------  344 (432)
                      .+.+++..+.-.-+ .++++||.||++||++|+...|.+.+++..+++   +.++.++.+.+..                
T Consensus         9 ~~~~~G~~~~l~~~-~Gk~vll~F~a~wC~~C~~~~p~l~~~~~~~~~---v~~v~v~~~~~~~~~~~~~~~~~~~~p~~   84 (134)
T d1lu4a_           9 ATTLSGAPFDGASL-QGKPAVLWFWTPWCPFCNAEAPSLSQVAAANPA---VTFVGIATRADVGAMQSFVSKYNLNFTNL   84 (134)
T ss_dssp             EEBTTSCEEEGGGG-TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT---SEEEEEECSSCHHHHHHHHHHHTCCSEEE
T ss_pred             eECCCCCEEcHHHh-CCCEEEEEEeecccCCceecchhHHHHhhhhcc---ccccccccccchhhhhhhhhhhcccccee
Confidence            34455555543222 468999999999999999999999999887654   6777777654211                


Q ss_pred             --------ccCCCCCCceEEEEeCCCcccCceeccCCCCHHHHHHHHHh
Q 013976          345 --------HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKK  385 (432)
Q Consensus       345 --------~~~~i~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~  385 (432)
                              ..+++.++|+++++..+..+.-.....|..+.+.|.+.|.+
T Consensus        85 ~d~~~~~~~~~~v~~~P~~~lid~~G~i~~v~~~~g~~~~~~l~~~l~~  133 (134)
T d1lu4a_          85 NDADGVIWARYNVPWQPAFVFYRADGTSTFVNNPTAAMSQDELSGRVAA  133 (134)
T ss_dssp             ECTTSHHHHHTTCCSSSEEEEECTTSCEEEECCSSSCCCHHHHHHHHHH
T ss_pred             eCchHHHHHHcCCCcCCEEEEEeCCCeEEEEeccCCCCCHHHHHHHHHc
Confidence                    24699999999999544333011134567899999988865

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=4.8e-09  Score=81.75  Aligned_cols=98  Identities=7%  Similarity=-0.057  Sum_probs=75.5

Q ss_pred             Cchhhhcc--CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeC
Q 013976          159 ENAPSVFE--SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGN  235 (432)
Q Consensus       159 ~~~~~~~~--~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~  235 (432)
                      ..+++.+.  .++.+++.|+++| ++|+.+.+.+.++|.++.+.+.|+.||+++   ++++++.|+|.+.  |+++++.+
T Consensus        11 ~~~dq~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~VDvd~---~~~la~~~~I~~~--PT~~~f~~   85 (137)
T d1qgva_          11 WQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITE---VPDFNKMYELYDP--CTVMFFFR   85 (137)
T ss_dssp             HHHHHHHHTCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTT---CCTTTTSSCSCSS--CEEEEEET
T ss_pred             HHHHHHHHhCCCCEEEEEEECCCCccchhcChHHHHHHHHhhccceEEEeeccc---cchhhhhcCeeeE--EEEEEEeC
Confidence            34555432  3446677799999 999999999999999999999999999998   6799999999988  99999976


Q ss_pred             CCCceecC--------CCC-CCHHHHHHHHHHHhc
Q 013976          236 DDAKKHIL--------DGE-LTLDKIKTFGEDFLE  261 (432)
Q Consensus       236 ~~~~~y~~--------~~~-~~~~~i~~fi~~~~~  261 (432)
                      ++.....+        .+. .+.+.+.+.++....
T Consensus        86 g~~i~~~~g~~~~~k~~~~l~~~~~~i~~ie~i~~  120 (137)
T d1qgva_          86 NKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYR  120 (137)
T ss_dssp             TEEEEEECC------CCSCCSCHHHHHHHHHHHHH
T ss_pred             CcEEEEEecCCCcceeeeehhhhHHHHHHHHHHHH
Confidence            64222222        222 367788888887654

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.81  E-value=1.9e-09  Score=82.13  Aligned_cols=103  Identities=7%  Similarity=0.031  Sum_probs=73.2

Q ss_pred             ceeecCCCchhhhccCCCcceEE--EEEeC-cchhhhHHHHHHHHHhccC-ceEEEEEecCCcccccchhhhhCCCCCCC
Q 013976          152 LVTIFTRENAPSVFESPIKNQLL--LFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNEDVGKPVSEYFGITGEAP  227 (432)
Q Consensus       152 ~v~~l~~~~~~~~~~~~~~~~i~--~~~~~-~~~~~~~~~~~~~a~~~~~-~i~f~~vd~~~~~~~~~l~~~~~i~~~~~  227 (432)
                      -+..++..+++.+.......+++  |++.| ++|+.+.+.|.+++++|.+ ++.++.+|++.   ++.+++.|||+..  
T Consensus        12 g~~~v~~~~ld~~~~~~~~~~vll~f~a~wCp~C~~~~pvl~eL~~~~~~~~~~~~~Vd~d~---~~~l~~~~~V~~~--   86 (119)
T d2es7a1          12 GWQPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQ---SEAIGDRFNVRRF--   86 (119)
T ss_dssp             TCEECCCC--------CCSEEEEECCCSCC----CCHHHHHHHHHHTCTTSCCEEEEECHHH---HHHHHHTTTCCSS--
T ss_pred             CCceecccCHHHHHHhCCCcEEEEeecCCCCccHHHHHHHHHHHHHhcCCCceEEEEEECCC---CHHHHHhcCcCcc--
Confidence            45677888888776554333333  55778 9999999999999999987 79999999987   5699999999998  


Q ss_pred             cEEEEEeCCCCceecCCCCCCHHHHHHHHHHHh
Q 013976          228 KVLAYTGNDDAKKHILDGELTLDKIKTFGEDFL  260 (432)
Q Consensus       228 P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~  260 (432)
                      |+++++.++ .....+.|..+.+++.++++..+
T Consensus        87 Pt~~~~~~G-~~v~~~~G~~~~~~l~~~i~~lL  118 (119)
T d2es7a1          87 PATLVFTDG-KLRGALSGIHPWAELLTLMRSIV  118 (119)
T ss_dssp             SEEEEESCC-----CEESCCCHHHHHHHHHHHH
T ss_pred             eEEEEEEcC-eEEEEeeCCCCHHHHHHHHHHHh
Confidence            999999644 34556789999999999999875

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=98.80  E-value=1.7e-09  Score=85.95  Aligned_cols=87  Identities=20%  Similarity=0.287  Sum_probs=62.2

Q ss_pred             CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCc----------------------cc-ccCCCCCC
Q 013976          296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN----------------------EH-HRAKSDGF  352 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~----------------------~~-~~~~i~~~  352 (432)
                      +++++||.||++||++|+..+|.+.++.+.++.  .+..+.++....                      .. ..+++.++
T Consensus        30 kgK~vll~fwa~wC~~C~~~~p~l~~l~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  107 (144)
T d1knga_          30 KGKVSLVNVWASWCVPCHDEAPLLTELGKDKRF--QLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVYGV  107 (144)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHTTCTTS--EEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCCSS
T ss_pred             CCCEEEEEeeccccccccccCchhhhhhhccCc--eeEEEEeeechHHHHHHHHHcCCccccccccccchhhhhcCcccc
Confidence            468999999999999999999999988665542  233322221111                      01 35689999


Q ss_pred             ceEEEE-eCCCcccCceeccCCCCHHHHHHHHHhcC
Q 013976          353 PTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNA  387 (432)
Q Consensus       353 P~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  387 (432)
                      |+.+++ ++|+.+.   .+.|..+.+.+.+.|++.+
T Consensus       108 P~~~liD~~G~i~~---~~~G~~~~~~l~~~i~~~l  140 (144)
T d1knga_         108 PETFVVGREGTIVY---KLVGPITPDNLRSVLLPQM  140 (144)
T ss_dssp             CEEEEECTTSBEEE---EEESCCCHHHHHHTHHHHH
T ss_pred             ceEEEEcCCCeEEE---EEeCCCCHHHHHHHHHHHH
Confidence            999999 5665544   6778889999888877654

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.79  E-value=6.1e-09  Score=79.02  Aligned_cols=102  Identities=11%  Similarity=0.142  Sum_probs=81.8

Q ss_pred             eeecCCCchhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCc-ccccchhhhhCCCCCCCcEE
Q 013976          153 VTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNE-DVGKPVSEYFGITGEAPKVL  230 (432)
Q Consensus       153 v~~l~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~-~~~~~l~~~~~i~~~~~P~i  230 (432)
                      +...+.+.+...+.++.+.+++||++| ++|+.+.+.|.+++.++..++.++.+|.... ...+.+++.+||.+.  |++
T Consensus        11 ~~~~t~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~p~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~V~~~--PTl   88 (115)
T d1zmaa1          11 LEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGIPTV--PGF   88 (115)
T ss_dssp             SEECCHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCCEEEETTCGGGHHHHHHHHHHHTCCSS--CEE
T ss_pred             eeeCCHHHHHHHHhcCCCEEEEEcCCCCccHHHHHHHHHHHHHHhhhhhhhheeecccccccccccccccccccc--cEE
Confidence            556677777778888888899999999 9999999999999999998877765553321 113467899999998  999


Q ss_pred             EEEeCCCCceecCCCCCCHHHHHHHHH
Q 013976          231 AYTGNDDAKKHILDGELTLDKIKTFGE  257 (432)
Q Consensus       231 ~i~~~~~~~~y~~~~~~~~~~i~~fi~  257 (432)
                      +++.+++ ....+.|.++.++|.+|+.
T Consensus        89 i~~~~gk-~~~~~~G~~~~~el~~fla  114 (115)
T d1zmaa1          89 VHITDGQ-INVRCDSSMSAQEIKDFAG  114 (115)
T ss_dssp             EEEETTE-EEEECCTTCCHHHHHHHHT
T ss_pred             EEEECCE-EEEEEcCCCCHHHHHHHHc
Confidence            9987653 4566889999999999984

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=98.78  E-value=1.7e-09  Score=83.85  Aligned_cols=106  Identities=8%  Similarity=0.073  Sum_probs=85.3

Q ss_pred             ceeecCCCchhhhccCCCcc--eEEEEEeC-cchhhhHHHHHHHHHhccCc-eEEEEEecCCcccccchhhhhCCCCCCC
Q 013976          152 LVTIFTRENAPSVFESPIKN--QLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNEDVGKPVSEYFGITGEAP  227 (432)
Q Consensus       152 ~v~~l~~~~~~~~~~~~~~~--~i~~~~~~-~~~~~~~~~~~~~a~~~~~~-i~f~~vd~~~~~~~~~l~~~~~i~~~~~  227 (432)
                      -+..++..+++.........  ++.|++.| ++|..+.+.|.+++++|.+. +.++.||++.   ++.+++.|||.+.  
T Consensus        18 g~~~~~~~~~d~~~~~~~~~vVll~f~a~wCp~C~~~~pvl~ela~~~~~~~~~~a~Vd~d~---~~~la~~~~V~~~--   92 (132)
T d2hfda1          18 GWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQ---SEAIGDRFGVFRF--   92 (132)
T ss_dssp             TCEEECHHHHHHHHHHCSEEEEEECSCCSCCSSSSCCTHHHHHHHTTCTTSCEEEEEECHHH---HHHHHHHHTCCSC--
T ss_pred             CCcccccccHHHHHHhCCCcEEEEEeeCCCChhHHHHHHHHHHHHHHccCCcceeEEEEecC---CHHHHHhhccCcc--
Confidence            45567778887765544332  33367788 99999999999999999986 6889999988   6799999999998  


Q ss_pred             cEEEEEeCCCCceecCCCCCCHHHHHHHHHHHhcCC
Q 013976          228 KVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGK  263 (432)
Q Consensus       228 P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g~  263 (432)
                      |+++++.+++ ....+.|.++.+.+.+||+.++...
T Consensus        93 PT~~~~~~G~-~v~~~~G~~~~~~l~~~i~~ll~~~  127 (132)
T d2hfda1          93 PATLVFTGGN-YRGVLNGIHPWAELINLMRGLVEPQ  127 (132)
T ss_dssp             CEEEEEETTE-EEEEECCCSCHHHHHHHHHHHHSCS
T ss_pred             eeEEEEEcCc-EeeeecCCCCHHHHHHHHHHHhCcc
Confidence            9999986553 4456789999999999999988643

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.75  E-value=1.1e-08  Score=80.87  Aligned_cols=65  Identities=18%  Similarity=0.293  Sum_probs=54.8

Q ss_pred             CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--------------------------ccCCC
Q 013976          296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--------------------------HRAKS  349 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--------------------------~~~~i  349 (432)
                      .++.++|.|||+||++|+...|.+.++.+.+++...+.++.|+.+.+..                          ..|+|
T Consensus        27 ~GK~vll~FwAtWC~pC~~~~p~L~~l~~~~~~~~~~~vi~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~y~v  106 (144)
T d1i5ga_          27 AGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDV  106 (144)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEEecCCchHhhhhHhHHHHHHHHHhccCcEEEEEeccccHHHHHHHHHhCCCCceeeEChHHHHHHHHHCCC
Confidence            4689999999999999999999999999999876578888888775431                          13589


Q ss_pred             CCCceEEEEeC
Q 013976          350 DGFPTILFFPA  360 (432)
Q Consensus       350 ~~~P~i~~~~~  360 (432)
                      .++|+++++..
T Consensus       107 ~~iPt~~lid~  117 (144)
T d1i5ga_         107 KSIPTLVGVEA  117 (144)
T ss_dssp             CSSSEEEEEET
T ss_pred             CCcCEEEEEeC
Confidence            99999999964

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.72  E-value=3.5e-09  Score=77.86  Aligned_cols=83  Identities=17%  Similarity=0.157  Sum_probs=64.8

Q ss_pred             cCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCcccCceeccC
Q 013976          295 DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDV  372 (432)
Q Consensus       295 ~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~~~g~~~~~~~~y~g  372 (432)
                      +..-++|++|+++||++|..+.+.|++++..+    ...++.+|.+.++.  .+|++. +|++++  +|..     ...|
T Consensus        13 ~~~~p~i~lft~~~C~~C~~a~~~L~~~~~~~----~~~~v~vd~~~~~~l~~~y~~~-VPvl~i--dg~~-----~~~g   80 (100)
T d1wjka_          13 NRALPVLTLFTKAPCPLCDEAKEVLQPYKDRF----ILQEVDITLPENSTWYERYKFD-IPVFHL--NGQF-----LMMH   80 (100)
T ss_dssp             CCCCCEEEEEECSSCHHHHHHHHHTSTTSSSS----EEEEEETTSSTTHHHHHHSSSS-CSEEEE--SSSE-----EEES
T ss_pred             CCCCCEEEEEECCCCCChHHHHHHHHHhhhhc----ceEEEecccccCHHHHHHhccc-CCceee--cCce-----EEeC
Confidence            34568999999999999999999998886554    35677777777665  678887 997654  5654     3568


Q ss_pred             CCCHHHHHHHHHhcCCC
Q 013976          373 DRTVVALYKFLKKNASI  389 (432)
Q Consensus       373 ~~~~~~l~~fi~~~~~~  389 (432)
                      ..+.+.|.++|++..+.
T Consensus        81 ~~d~~~L~~~L~~l~~~   97 (100)
T d1wjka_          81 RVNTSKLEKQLRKLSGP   97 (100)
T ss_dssp             SCCHHHHHHHHHSSSCS
T ss_pred             CCCHHHHHHHHHHHhcC
Confidence            89999999999987653

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=1.4e-08  Score=80.15  Aligned_cols=96  Identities=14%  Similarity=0.131  Sum_probs=69.2

Q ss_pred             ccchhhh---hcCCCcEEEEEeCCCChhhhhhHHHH---HHHHHHhcCCCCEEEEEEeCCCccc----ccCCCCCCceEE
Q 013976          287 NNFDEIV---LDESKDVLLEIYAPWCGHCQAFEPTY---NKLAKHLRGVDSIVIAKMDGTTNEH----HRAKSDGFPTIL  356 (432)
Q Consensus       287 ~~~~~~~---~~~~~~~lv~f~~~~c~~c~~~~~~~---~~la~~~~~~~~~~~~~id~~~~~~----~~~~i~~~P~i~  356 (432)
                      .+|++.+   ...+++++|+|+++||.+|+.|....   .++.+.++.  ++.++.+|.+..+.    ..|++.++|+++
T Consensus        29 ~~~~~A~~~Ak~~~K~llV~~~~~~C~~C~~m~~~v~~d~~V~~~l~~--~fV~~~v~~~~~e~~~~~~~y~v~~~Pti~  106 (147)
T d2dlxa1          29 GSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIRE--HFIFWQVYHDSEEGQRYIQFYKLGDFPYVS  106 (147)
T ss_dssp             SCHHHHHHHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHH--TEEEEEEESSSHHHHHHHHHHTCCSSSEEE
T ss_pred             CCHHHHHHHHHHcCCcEEEEEecCCCCchHHHHHhccCCHHHHHHHhh--heeEeeecccchhhhhhhhheecCceeEEE
Confidence            4555544   34579999999999999999987643   445555655  69999999877655    478999999999


Q ss_pred             EEe-C-CCcccCceeccCCCCHHHHHHHHHhcCC
Q 013976          357 FFP-A-GNKSFDPINVDVDRTVVALYKFLKKNAS  388 (432)
Q Consensus       357 ~~~-~-g~~~~~~~~y~g~~~~~~l~~fi~~~~~  388 (432)
                      ++. . |..+    ..-|..+.+.+++.|++.+.
T Consensus       107 ~idp~~ge~v----~~~~~~~~~~fl~~L~~fl~  136 (147)
T d2dlxa1         107 ILDPRTGQKL----VEWHQLDVSSFLDQVTGFLG  136 (147)
T ss_dssp             EECTTTCCCC----EEESSCCHHHHHHHHHHHHH
T ss_pred             EEeCCCCeEe----cccCCCCHHHHHHHHHHHHh
Confidence            994 3 4443    34456788777666555443

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=98.66  E-value=2.5e-08  Score=78.21  Aligned_cols=86  Identities=19%  Similarity=0.363  Sum_probs=67.4

Q ss_pred             CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc------------------------ccCCCCC
Q 013976          296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------------------------HRAKSDG  351 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~------------------------~~~~i~~  351 (432)
                      .++.++|.||++||.+|+...+.+.++.+.+.+. ++.++.++++.+..                        ..+++.+
T Consensus        24 ~gk~~li~f~~~~C~~C~~~~~~l~~~~~~~~~~-~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  102 (137)
T d1st9a_          24 KGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQ-GVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSP  102 (137)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGG-TEEEEEEEESCCHHHHHHHHHHTTCCSCEEEETTSHHHHHTTCCS
T ss_pred             CCCEEEEEEeeccccceeeccccccccccccccc-ccccccccccchhhhHHHHHHHcCCCccccccccchhhhhhhccc
Confidence            4678999999999999999999999999999874 68888877654221                        2358889


Q ss_pred             CceEEEE-eCCCcccCceeccCCCCHHHHHHHHHh
Q 013976          352 FPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKK  385 (432)
Q Consensus       352 ~P~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~  385 (432)
                      +|+++++ ++|..+.   .+.|..+.+.+.++++.
T Consensus       103 ~P~~~liD~~G~i~~---~~~G~~~~~~~~~~l~~  134 (137)
T d1st9a_         103 LPTTFLINPEGKVVK---VVTGTMTESMIHDYMNL  134 (137)
T ss_dssp             SCEEEEECTTSEEEE---EEESCCCHHHHHHHHHH
T ss_pred             cceEEEECCCCEEEE---EEECCCCHHHHHHHHHh
Confidence            9999999 5454433   57788888888887754

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=98.63  E-value=4e-08  Score=77.66  Aligned_cols=65  Identities=22%  Similarity=0.427  Sum_probs=54.2

Q ss_pred             CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--------------------------ccCCC
Q 013976          296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--------------------------HRAKS  349 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--------------------------~~~~i  349 (432)
                      .++.++|.|||+||++|+...|.+.++.+++....++.++.|+.+....                          ..|++
T Consensus        27 ~GK~vvl~FwatwC~~C~~~~p~l~~l~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~v  106 (144)
T d1o73a_          27 VGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGV  106 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHTC
T ss_pred             CCCEEEEEeChhhCccchhhhHHHHHHHHHHhhccCeEEEEEecchhHHHHHHHHHhccccceeeeccchHHHHHHHcCC
Confidence            4789999999999999999999999999999765578888888775321                          12488


Q ss_pred             CCCceEEEEeC
Q 013976          350 DGFPTILFFPA  360 (432)
Q Consensus       350 ~~~P~i~~~~~  360 (432)
                      .++|+++++..
T Consensus       107 ~~~Pt~~lID~  117 (144)
T d1o73a_         107 ESIPTLITINA  117 (144)
T ss_dssp             CSSSEEEEEET
T ss_pred             CcCCEEEEEEC
Confidence            99999999964

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.59  E-value=9.5e-08  Score=69.47  Aligned_cols=76  Identities=12%  Similarity=0.076  Sum_probs=63.1

Q ss_pred             ceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCceecCCCCCCH
Q 013976          171 NQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTL  249 (432)
Q Consensus       171 ~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~~~~  249 (432)
                      .+++|+++| ++|+.+.+.+.++|..+.+ +.|..+|++.   ++++++.|||++.  |++++  ++  + ..+.|.++.
T Consensus        18 ~i~~F~s~~C~~C~~~~p~~~~~a~~~~~-i~~~~vd~~~---~~~l~~~~~I~~v--Pt~~~--ng--~-~~~~G~~~~   86 (96)
T d1hyua4          18 EFETYYSLSCHNCPDVVQALNLMAVLNPR-IKHTAIDGGT---FQNEITERNVMGV--PAVFV--NG--K-EFGQGRMTL   86 (96)
T ss_dssp             EEEEEECTTCSSHHHHHHHHHHHHHHCTT-EEEEEEETTT---CHHHHHHTTCCSS--SEEEE--TT--E-EEEESCCCH
T ss_pred             EEEEEECCCCcchHHHHHHHHHHHHhCCc-eEEEEEeccc---chHHHhhcccccc--cEEEE--CC--E-EEEecCCCH
Confidence            466688999 9999999999999988654 9999999998   6799999999998  99854  22  2 235688999


Q ss_pred             HHHHHHHH
Q 013976          250 DKIKTFGE  257 (432)
Q Consensus       250 ~~i~~fi~  257 (432)
                      +.|.++++
T Consensus        87 ~~l~~~le   94 (96)
T d1hyua4          87 TEIVAKVD   94 (96)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHHh
Confidence            99998875

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=98.59  E-value=1e-07  Score=78.66  Aligned_cols=90  Identities=10%  Similarity=0.063  Sum_probs=67.7

Q ss_pred             CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCcc---------------------------c----
Q 013976          296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE---------------------------H----  344 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~---------------------------~----  344 (432)
                      .++.+||.||++||++|+...|.+.+|++.|++  ++.+..++.....                           .    
T Consensus        31 kGk~vvl~FwatwCp~C~~~~p~l~~l~~~y~~--~v~~v~i~snd~~~~~~~~~e~~~~~~~~~~~~~p~l~D~~~~~~  108 (187)
T d2cvba1          31 HEPLLAVVFMCNHCPYVKGSIGELVALAERYRG--KVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVA  108 (187)
T ss_dssp             CSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTT--TEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHHH
T ss_pred             CCCeEEEEEeCCCCccchhhhhhhhhhhhhccc--cceeeeeeccccccccccchHHHHHHHHHhCCcceeeechhhhhc
Confidence            468999999999999999999999999999987  5888887742100                           0    


Q ss_pred             ccCCCCCCceEEEEeCCCcccCceeccCCC----------CHHHHHHHHHhcCCCCC
Q 013976          345 HRAKSDGFPTILFFPAGNKSFDPINVDVDR----------TVVALYKFLKKNASIPF  391 (432)
Q Consensus       345 ~~~~i~~~P~i~~~~~g~~~~~~~~y~g~~----------~~~~l~~fi~~~~~~~~  391 (432)
                      ..|++..+|+++++.....+    .|.|..          +...|.+.|++.++...
T Consensus       109 ~~~~v~~~P~~~liD~~G~i----~y~G~idd~~~~~~~~~~~~L~~Ai~~ll~g~~  161 (187)
T d2cvba1         109 KAYRALRTPEVFLFDERRLL----RYHGRVNDNPKDPSKVQSHDLEAAIEALLRGEE  161 (187)
T ss_dssp             HHTTCCEESEEEEECTTCBE----EEEECSSSCTTCGGGCCCCHHHHHHHHHHTTCC
T ss_pred             ccccccceeeEEEEcCCCeE----EEEeeecCCCCCCCCCCHHHHHHHHHHHHcCCC
Confidence            23599999999999655444    676632          33567777777776553

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=98.47  E-value=2.3e-07  Score=75.92  Aligned_cols=88  Identities=19%  Similarity=0.431  Sum_probs=63.4

Q ss_pred             CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc---c---------------------------
Q 013976          296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH---H---------------------------  345 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~---~---------------------------  345 (432)
                      .++++||+||++||.+|+...+.+.++...+... .+.++.+.++..+.   .                           
T Consensus        55 kGK~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~-~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  133 (176)
T d1jfua_          55 RGKTLLVNLWATWCVPCRKEMPALDELQGKLSGP-NFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKA  133 (176)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBT-TEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHHHHT
T ss_pred             CCCEEEEEeccCcccchHHHHHhhhhcccccccc-ccccccccccccchhhhhhhHhhhCCcceeeeecchhHHHHHHhh
Confidence            4689999999999999999999999999988764 55666665542211   0                           


Q ss_pred             cCCCCCCceEEEE-eCCCcccCceeccCC--CCHHHHHHHHHhcC
Q 013976          346 RAKSDGFPTILFF-PAGNKSFDPINVDVD--RTVVALYKFLKKNA  387 (432)
Q Consensus       346 ~~~i~~~P~i~~~-~~g~~~~~~~~y~g~--~~~~~l~~fi~~~~  387 (432)
                      .+.+.++|+.+++ ++|..+.   .+.|.  .+.++++++|+..+
T Consensus       134 ~~~v~~~P~~~lID~~G~I~~---~~~G~~~~~~~e~~~~l~al~  175 (176)
T d1jfua_         134 IGRALGMPTSVLVDPQGCEIA---TIAGPAEWASEDALKLIRAAT  175 (176)
T ss_dssp             TTCCSSSSEEEEECTTSBEEE---EEESCCCTTSHHHHHHHHHHH
T ss_pred             hccCCCCCeEEEEcCCCEEEE---EEECCCCCChHHHHHHHHHhc
Confidence            1256778999999 4444433   46663  45588999988754

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.45  E-value=2.6e-07  Score=72.80  Aligned_cols=65  Identities=17%  Similarity=0.318  Sum_probs=54.2

Q ss_pred             CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--------------------------ccCCC
Q 013976          296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--------------------------HRAKS  349 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--------------------------~~~~i  349 (432)
                      .++.++|.||++||++|+...+.+.++++.+....++.++.++.+.+..                          ..|++
T Consensus        25 ~GK~vll~Fwa~wC~~C~~~~~~l~~l~~~~~~~~~~~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~y~v  104 (144)
T d1o8xa_          25 AGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNV  104 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHHTTC
T ss_pred             CCCEEEEEeccccccccccccchhHHhhhhcccccccccccccccccHHHHHHHHhhccccceeeecccchhhHHHHcCC
Confidence            4689999999999999999999999999999875578888888765311                          23599


Q ss_pred             CCCceEEEEeC
Q 013976          350 DGFPTILFFPA  360 (432)
Q Consensus       350 ~~~P~i~~~~~  360 (432)
                      .++|+++++..
T Consensus       105 ~~~Pt~~liD~  115 (144)
T d1o8xa_         105 ESIPTLIGVDA  115 (144)
T ss_dssp             CSSSEEEEEET
T ss_pred             CcCCEEEEEeC
Confidence            99999999964

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=3.7e-07  Score=69.10  Aligned_cols=95  Identities=17%  Similarity=0.159  Sum_probs=68.4

Q ss_pred             Cchhhhcc--CCCcceEEEEEe-------C-cchhhhHHHHHHHHHhccCceEEEEEecCCc----ccccchhhhhCCCC
Q 013976          159 ENAPSVFE--SPIKNQLLLFAV-------S-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNE----DVGKPVSEYFGITG  224 (432)
Q Consensus       159 ~~~~~~~~--~~~~~~i~~~~~-------~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~----~~~~~l~~~~~i~~  224 (432)
                      +.+...+.  .+++++|.|+++       | ++|+.+.+.+.+++..+.+++.|+.||++..    +-+..+++.|+|.+
T Consensus        10 ~e~~~~l~~~~gk~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~~~~~~~vdv~~~~~~~d~~~~l~~~~~V~~   89 (119)
T d1woua_          10 EEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFRKNLKVTA   89 (119)
T ss_dssp             HHHHHHHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHHHHHHCCCS
T ss_pred             HHHHHHHHHcCCCEEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHhcCCceEEEEEECCCCcccchhhhhHHHhCCeEE
Confidence            34444433  345667777874       9 9999999999999999999999999998541    11456889999999


Q ss_pred             CCCcEEEEEeCCCCceecCCCCCCHHHHHHHHH
Q 013976          225 EAPKVLAYTGNDDAKKHILDGELTLDKIKTFGE  257 (432)
Q Consensus       225 ~~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~  257 (432)
                      .  |+++++.+++ +..... ..+.+.|..|++
T Consensus        90 i--PT~i~~~~g~-~l~~~~-~~~~~ll~~~~~  118 (119)
T d1woua_          90 V--PTLLKYGTPQ-KLVESE-CLQANLVEMLFS  118 (119)
T ss_dssp             S--SEEEETTSSC-EEEGGG-GGCHHHHHHHHH
T ss_pred             E--EEEEEEECCe-EEeeee-cCCHHHHHHHhc
Confidence            8  9998886553 222222 246677777775

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=98.27  E-value=1.5e-06  Score=65.50  Aligned_cols=89  Identities=8%  Similarity=0.102  Sum_probs=67.3

Q ss_pred             CCCcceEEEEEeC-cchhhhHHHH---HHHHHhccCceEEEEEecCCc-ccccchhhhhCCCCCCCcEEEEEeCCCCc--
Q 013976          167 SPIKNQLLLFAVS-NDSEKLLPVF---EEAAKSFKGKLIFVYVQMDNE-DVGKPVSEYFGITGEAPKVLAYTGNDDAK--  239 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~~~~~~~~~---~~~a~~~~~~i~f~~vd~~~~-~~~~~l~~~~~i~~~~~P~i~i~~~~~~~--  239 (432)
                      .+++++|.||++| +.|+.+.+.+   .+++..+.+ +.+..+|.... +....+++.||+.++  |++++++.++..  
T Consensus        21 ~gK~vlv~F~a~wC~~C~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~v~~~--Pt~~~~~~~G~~~~   97 (117)
T d2fwha1          21 KGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALAD-TVLLQANVTANDAQDVALLKHLNVLGL--PTILFFDGQGQEHP   97 (117)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTTT-SEEEEEECTTCCHHHHHHHHHTTCCSS--SEEEEECTTSCBCG
T ss_pred             CCCeEEEEEecccCCcccccchhHHhHHHHHHhccc-eEEEecccccchhHHHHHHhhhehhhc--eEEEEEeCCCcEEe
Confidence            4668888899999 9999998887   455555554 66677776542 225678899999998  999999765432  


Q ss_pred             eecCCCCCCHHHHHHHHHH
Q 013976          240 KHILDGELTLDKIKTFGED  258 (432)
Q Consensus       240 ~y~~~~~~~~~~i~~fi~~  258 (432)
                      .+.+.|.++.+.+.+++++
T Consensus        98 ~~~~~G~~~~~~~~~~l~~  116 (117)
T d2fwha1          98 QARVTGFMDAETFSAHLRD  116 (117)
T ss_dssp             GGCBCSCCCHHHHHHHHHH
T ss_pred             cccccccCCHHHHHHHHhc
Confidence            2456789999999999875

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.16  E-value=8.9e-07  Score=71.45  Aligned_cols=63  Identities=19%  Similarity=0.282  Sum_probs=49.2

Q ss_pred             CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccC---CCCCCceEEEEeCC
Q 013976          296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRA---KSDGFPTILFFPAG  361 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~---~i~~~P~i~~~~~g  361 (432)
                      +++.+++.||++||++|+...|.+.+++..+.+   +.+..|+.+.+..  ..+   ....+|.+++....
T Consensus        53 ~~~~~~l~~~~tWC~~C~~~~P~l~~l~~~~~~---~~~~~i~~d~~~~~~~~~~~~~~~~~p~~~~~d~~  120 (166)
T d1z6na1          53 ERRYRLLVAGEMWCPDCQINLAALDFAQRLQPN---IELAIISKGRAEDDLRQRLALERIAIPLVLVLDEE  120 (166)
T ss_dssp             CSCEEEEEECCTTCHHHHHHHHHHHHHHHHCTT---EEEEEECHHHHHHHTTTTTTCSSCCSSEEEEECTT
T ss_pred             cCCeEEEEEEeCcCccHHHHHHHHHHHHHHCCC---CcEEEEECccCHHHHHHHHHhccccccceeecCcc
Confidence            356779999999999999999999999998764   7777787776655  344   55578888777444

>d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=98.10  E-value=1.6e-05  Score=61.22  Aligned_cols=111  Identities=11%  Similarity=0.127  Sum_probs=83.9

Q ss_pred             ceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCC--CCCceE
Q 013976          280 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKS--DGFPTI  355 (432)
Q Consensus       280 ~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i--~~~P~i  355 (432)
                      .|..++.+++..+. +..++.+++|+... .....+...+.++|+.+++  ++.|+.+|...+..  ..+++  ..+|.+
T Consensus         7 Lv~e~~~~n~~~~~-~~~~pl~~lf~~~~-~~~~~~~~~~~~vA~~~~~--ki~Fv~vd~~~~~~~l~~~gl~~~~~P~~   82 (133)
T d2djka1           7 LIGEIGPETYSDYM-SAGIPLAYIFAETA-EERKELSDKLKPIAEAQRG--VINFGTIDAKAFGAHAGNLNLKTDKFPAF   82 (133)
T ss_dssp             CSEECCHHHHHHHH-HTTSCEEEEECSCS-SSHHHHHHHHHHHHHSSTT--TSEEEEECTTTTGGGTTTTTCCSSSSSEE
T ss_pred             ceeccChhhHHHHh-cCCCCEEEEEeCCc-hHHHHHHHHHHHHHHHhcC--ceEEEEEeHHHhHHHHHHhcCCcccCCcE
Confidence            47888999999976 56678888887665 4678889999999999988  79999999888766  45566  578999


Q ss_pred             EEEeCCCcccCceeccCCCCHHHHHHHHHhcCCCCCccc
Q 013976          356 LFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPFKIQ  394 (432)
Q Consensus       356 ~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~~~~~  394 (432)
                      +++.......-+..-.+..+.++|.+||++..+.+....
T Consensus        83 ~i~~~~~~~~~~~~~~~~i~~~~i~~Fi~d~~~Gkl~p~  121 (133)
T d2djka1          83 AIQEVAKNQKFPFDQEKEITFEAIKAFVDDFVAGKIEPS  121 (133)
T ss_dssp             EEECTTTCCBCCCCSSSCCCHHHHHHHHHHHHHTCCCCS
T ss_pred             EEEEcCCCceecCCccccCCHHHHHHHHHHHHcCCCCcc
Confidence            998544332111222457899999999999887665443

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=3.9e-06  Score=65.78  Aligned_cols=94  Identities=14%  Similarity=0.106  Sum_probs=73.1

Q ss_pred             cCCCcceEEEEEeC-cchhhhHHHH---HHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCcee
Q 013976          166 ESPIKNQLLLFAVS-NDSEKLLPVF---EEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKH  241 (432)
Q Consensus       166 ~~~~~~~i~~~~~~-~~~~~~~~~~---~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y  241 (432)
                      ..+++.+|.|+++| ..|+.+.+..   .++.+-++.++.++.+|.+..+ +..+++.|++.+.  |+++++++.+++..
T Consensus        40 ~~~K~llV~~~~~~C~~C~~m~~~v~~d~~V~~~l~~~fV~~~v~~~~~e-~~~~~~~y~v~~~--Pti~~idp~~ge~v  116 (147)
T d2dlxa1          40 MQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEE-GQRYIQFYKLGDF--PYVSILDPRTGQKL  116 (147)
T ss_dssp             HHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHTEEEEEEESSSHH-HHHHHHHHTCCSS--SEEEEECTTTCCCC
T ss_pred             HcCCcEEEEEecCCCCchHHHHHhccCCHHHHHHHhhheeEeeecccchh-hhhhhhheecCce--eEEEEEeCCCCeEe
Confidence            45667778888899 8999986533   4455556667899999988765 7888999999987  99999987655555


Q ss_pred             cCCCCCCHHHHHHHHHHHhcC
Q 013976          242 ILDGELTLDKIKTFGEDFLEG  262 (432)
Q Consensus       242 ~~~~~~~~~~i~~fi~~~~~g  262 (432)
                      ...|.++.+.+.+.+++++..
T Consensus       117 ~~~~~~~~~~fl~~L~~fl~~  137 (147)
T d2dlxa1         117 VEWHQLDVSSFLDQVTGFLGE  137 (147)
T ss_dssp             EEESSCCHHHHHHHHHHHHHH
T ss_pred             cccCCCCHHHHHHHHHHHHhh
Confidence            555778999998888888863

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=97.86  E-value=4.3e-05  Score=59.47  Aligned_cols=105  Identities=14%  Similarity=0.043  Sum_probs=77.8

Q ss_pred             eecCCCchhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccC-ceEEEEEecCCcc--------------------
Q 013976          154 TIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNED--------------------  211 (432)
Q Consensus       154 ~~l~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~-~i~f~~vd~~~~~--------------------  211 (432)
                      ...+..........+++.++.||++| +.|+...+.+.++.++++. .+.++.+......                    
T Consensus         9 ~~~~~~~~~l~~~~gk~vvl~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (143)
T d2fy6a1           9 KTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLNYPKL   88 (143)
T ss_dssp             EETTSCBGGGGCCTTSCEEEEEECTTCHHHHTTHHHHHHHHHCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCTTS
T ss_pred             ECCCCCEeeHHHhCCCEEEEEEECCCCccccccCcchhhhhhhhccCCcEEEEEeeeecccccchhhhhhhhhhcCCccc
Confidence            34445555555566778889999999 9999999999999999874 3555555432110                    


Q ss_pred             -----cccchhhhhCCCCCCCcEEEEEeCCCCceecCCCCCCHHHHHHHHHHHh
Q 013976          212 -----VGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFL  260 (432)
Q Consensus       212 -----~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~  260 (432)
                           -...+.+.||+.+.  |++++++.++...+...|.++.+.+.+++++..
T Consensus        89 ~~~~D~~~~~~~~~~v~~~--P~~~liD~~G~i~~~~~G~~~~~~~~~~l~~~~  140 (143)
T d2fy6a1          89 PVVTDNGGTIAQSLNISVY--PSWALIGKDGDVQRIVKGSINEAQALALIRDPN  140 (143)
T ss_dssp             CEEECTTCHHHHHTTCCSS--SEEEEECTTSCEEEEEESCCCHHHHHHHHHCTT
T ss_pred             ccccccchHHHHHcCCCcc--CEEEEECCCCEEEEEEECCCCHHHHHHHHHHHh
Confidence                 02355788888887  999999877666677789999999999999854

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.82  E-value=1.4e-05  Score=66.94  Aligned_cols=103  Identities=11%  Similarity=0.101  Sum_probs=76.2

Q ss_pred             CCceeecCC-CchhhhccC-C--CcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCC
Q 013976          150 LPLVTIFTR-ENAPSVFES-P--IKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITG  224 (432)
Q Consensus       150 ~p~v~~l~~-~~~~~~~~~-~--~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~  224 (432)
                      +..|.+++. +.|...+.. +  ..++|.||++| +.|..+.+.|..+|.+|.+ +.|+.||+..   . .++..|++..
T Consensus        98 ~G~v~~i~~~~~f~~~v~~~~~~~~Vvvhfy~~~~~~C~~~~~~l~~lA~~~~~-vkF~ki~~~~---~-~~~~~~~i~~  172 (217)
T d2trcp_          98 YGFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYPM-VKFCKIRASN---T-GAGDRFSSDV  172 (217)
T ss_dssp             CCSEEECCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTCTT-SEEEEEEHHH---H-TCSTTSCGGG
T ss_pred             CCeEEEcCCHHHHHHHHHhcCCCCeEEEEEEcCCCCChhhhhhhHHHHhhhccc-ceEEEEcccc---c-hhHHhCCCCC
Confidence            346888864 667665532 2  23566799999 9999999999999999987 9999999875   2 3567888877


Q ss_pred             CCCcEEEEEeCCCCce--ec---CCC-CCCHHHHHHHHHHH
Q 013976          225 EAPKVLAYTGNDDAKK--HI---LDG-ELTLDKIKTFGEDF  259 (432)
Q Consensus       225 ~~~P~i~i~~~~~~~~--y~---~~~-~~~~~~i~~fi~~~  259 (432)
                      .  |+++++.++....  ..   ..| .++.+.|..|+.++
T Consensus       173 l--Ptl~~yk~G~~v~~~vg~~~~~g~~~~~~~lE~~L~~~  211 (217)
T d2trcp_         173 L--PTLLVYKGGELISNFISVAEQFAEDFFAADVESFLNEY  211 (217)
T ss_dssp             C--SEEEEEETTEEEEEETTGGGGSCSSCCHHHHHHHHHTT
T ss_pred             C--CeEEEEECCEEEEEEECccccccccCCHHHHHHHHHHc
Confidence            7  9999997765211  11   112 57889999998874

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.73  E-value=0.00013  Score=55.96  Aligned_cols=89  Identities=18%  Similarity=0.185  Sum_probs=65.9

Q ss_pred             CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcc--------------------cccchhhhhCCCCC
Q 013976          167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED--------------------VGKPVSEYFGITGE  225 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~--------------------~~~~l~~~~~i~~~  225 (432)
                      .+++.++.||++| +.|+...+.+.++++++++ +.++.+...+..                    ....+.+.||+.+.
T Consensus        24 ~Gk~vll~fwa~wC~~C~~~~p~l~~l~~~~~~-~~~v~v~~~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~v~~~  102 (134)
T d1zzoa1          24 LGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPE-VTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFGVTQQ  102 (134)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHHTTCCSS
T ss_pred             CCCEEEEEecccccCcccccchhhHHHHhhhcc-cccccccccccchhHHHHHHhcCCcceeEEeeccchHHHhcCCCcc
Confidence            5678888899999 9999999999999999987 444444433211                    12356677888776


Q ss_pred             CCcEEEEEeCCCCceecCCCCCCHHHHHHHHHHH
Q 013976          226 APKVLAYTGNDDAKKHILDGELTLDKIKTFGEDF  259 (432)
Q Consensus       226 ~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~  259 (432)
                        |+.++++.++...+ ..|..+.+.|.+.|+..
T Consensus       103 --P~~~iiD~~G~i~~-~~g~~~~~~l~~~i~~L  133 (134)
T d1zzoa1         103 --PAYAFVDPHGNVDV-VRGRMSQDELTRRVTAL  133 (134)
T ss_dssp             --SEEEEECTTCCEEE-EESCCCHHHHHHHHHHH
T ss_pred             --CeEEEECCCCeEEE-EECCCCHHHHHHHHHhh
Confidence              99988876654334 46888999999988764

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

Probab=97.71  E-value=8.9e-05  Score=57.59  Aligned_cols=91  Identities=11%  Similarity=0.158  Sum_probs=68.9

Q ss_pred             cCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcc------------------------cccchhhhh
Q 013976          166 ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED------------------------VGKPVSEYF  220 (432)
Q Consensus       166 ~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~------------------------~~~~l~~~~  220 (432)
                      ..+++.++.||++| +.|....+.+.++..++++.+.++.+......                        -...+.+.|
T Consensus        27 ~~~k~vvl~f~a~~C~~C~~~~p~l~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~  106 (143)
T d2b5xa1          27 IGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHALTDAF  106 (143)
T ss_dssp             TTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECSSCHHHHHT
T ss_pred             hCCCEEEEEEEcCCCcchhhhhhhhhhhhhhhhccccceeEEeeccccccchhhhhhHHHhhccCccccccCccchHHHc
Confidence            45567778899999 89999999999999999988888877654311                        012355667


Q ss_pred             CCCCCCCcEEEEEeCCCCceecCCCCCCHHHHHHHHHH
Q 013976          221 GITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGED  258 (432)
Q Consensus       221 ~i~~~~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~  258 (432)
                      ++...  |++++++.++...+.+.|..+.+.+.+-+++
T Consensus       107 ~v~~~--P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~  142 (143)
T d2b5xa1         107 ENEYV--PAYYVFDKTGQLRHFQAGGSGMKMLEKRVNR  142 (143)
T ss_dssp             CCCCS--SEEEEECTTCBEEEEEESCSTTHHHHHHHHH
T ss_pred             CCCcC--CEEEEECCCCEEEEEEECCCCHHHHHHHHHh
Confidence            77666  9998887776666777888888888887765

>d2b5ea3 c.47.1.2 (A:240-364) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.63  E-value=4.7e-05  Score=57.57  Aligned_cols=106  Identities=14%  Similarity=0.155  Sum_probs=78.3

Q ss_pred             EecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCC-CCceEEEEeC
Q 013976          284 VVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSD-GFPTILFFPA  360 (432)
Q Consensus       284 l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~-~~P~i~~~~~  360 (432)
                      ++.+++..++ ..+.|++++|+.+. ..-..+...+.++|+.+++  ++.|+.+|.+.+..  ..+++. ..|.+++...
T Consensus         5 i~~~~~~~y~-~~~~Pl~~~f~~~~-~~~~~~~~~~~~vAk~fkg--ki~Fv~~D~~~~~~~l~~fgl~e~~P~~~i~~~   80 (125)
T d2b5ea3           5 IDGSVFAQYV-ESGLPLGYLFYNDE-EELEEYKPLFTELAKKNRG--LMNFVSIDARKFGRHAGNLNMKEQFPLFAIHDM   80 (125)
T ss_dssp             CCHHHHHHHH-HTTSCEEEEEESSH-HHHHHHHHHHHHHHHHTTT--TCEEEEEEHHHHTTHHHHTTCCSCSSEEEEEET
T ss_pred             cCHHHHHHHH-hcCCCEEEEEeCCh-HHHHHHHHHHHHHHHHhcC--eeEEEEEchHHhHHHHHHcCCCccCCcEEEEec
Confidence            5667888876 56788999898865 3456789999999999998  79999999887765  456655 4899998864


Q ss_pred             CCcccCc-----------eeccCCCCHHHHHHHHHhcCCCCCcc
Q 013976          361 GNKSFDP-----------INVDVDRTVVALYKFLKKNASIPFKI  393 (432)
Q Consensus       361 g~~~~~~-----------~~y~g~~~~~~l~~fi~~~~~~~~~~  393 (432)
                      .+...-+           ....+..+.++|.+|+++....+.++
T Consensus        81 ~~~~ky~~~~~~~~~~~~~~~~~e~t~~~i~~F~~d~l~GKlkP  124 (125)
T d2b5ea3          81 TEDLKYGLPQLSEEAFDELSDKIVLESKAIESLVKDFLKGDASP  124 (125)
T ss_dssp             TTTEEEECCCCCHHHHHTCCSCCCCCHHHHHHHHHHHHHTCCCC
T ss_pred             ccCcccccchhhhhhcccccccccCCHHHHHHHHHHHHcCCcCC
Confidence            4322000           01235789999999999988766543

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.55  E-value=0.00041  Score=52.93  Aligned_cols=89  Identities=8%  Similarity=0.095  Sum_probs=66.5

Q ss_pred             CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcc-------------------cccchhhhhCCCCCC
Q 013976          167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED-------------------VGKPVSEYFGITGEA  226 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~-------------------~~~~l~~~~~i~~~~  226 (432)
                      .+++.++.||++| +.|....+.+.+++.++.+ +.++.+......                   -...+++.||+... 
T Consensus        23 ~Gk~vll~F~a~wC~~C~~~~p~l~~~~~~~~~-v~~v~v~~~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~-  100 (134)
T d1lu4a_          23 QGKPAVLWFWTPWCPFCNAEAPSLSQVAAANPA-VTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNVPWQ-  100 (134)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHTTCCSS-
T ss_pred             CCCEEEEEEeecccCCceecchhHHHHhhhhcc-ccccccccccchhhhhhhhhhhccccceeeCchHHHHHHcCCCcC-
Confidence            5678888899999 9999999999999999876 666666654311                   12456788888877 


Q ss_pred             CcEEEEEeCCCCceec--CCCCCCHHHHHHHHHH
Q 013976          227 PKVLAYTGNDDAKKHI--LDGELTLDKIKTFGED  258 (432)
Q Consensus       227 ~P~i~i~~~~~~~~y~--~~~~~~~~~i~~fi~~  258 (432)
                       |++++++.++...+.  ..|..+.++|.+-|..
T Consensus       101 -P~~~lid~~G~i~~v~~~~g~~~~~~l~~~l~~  133 (134)
T d1lu4a_         101 -PAFVFYRADGTSTFVNNPTAAMSQDELSGRVAA  133 (134)
T ss_dssp             -SEEEEECTTSCEEEECCSSSCCCHHHHHHHHHH
T ss_pred             -CEEEEEeCCCeEEEEeccCCCCCHHHHHHHHHc
Confidence             999999876544443  3567888888887754

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=97.52  E-value=0.00024  Score=54.50  Aligned_cols=91  Identities=13%  Similarity=0.184  Sum_probs=69.4

Q ss_pred             CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCc-eEEEEEecCCcc-------------------cccchhhhhCCCCC
Q 013976          167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNED-------------------VGKPVSEYFGITGE  225 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~-i~f~~vd~~~~~-------------------~~~~l~~~~~i~~~  225 (432)
                      .+++.+|.||++| +.|....+.+.++.+++.+. +.++.+..++..                   ....+++.||+...
T Consensus        24 ~gk~~li~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  103 (137)
T d1st9a_          24 KGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSPL  103 (137)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHTTCCSCEEEETTSHHHHHTTCCSS
T ss_pred             CCCEEEEEEeeccccceeecccccccccccccccccccccccccchhhhHHHHHHHcCCCccccccccchhhhhhhcccc
Confidence            4557788889999 88999999999999998764 777777654321                   12356677888776


Q ss_pred             CCcEEEEEeCCCCceecCCCCCCHHHHHHHHHHH
Q 013976          226 APKVLAYTGNDDAKKHILDGELTLDKIKTFGEDF  259 (432)
Q Consensus       226 ~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~  259 (432)
                        |++++++.++...+.+.|..+.+.+.++++.+
T Consensus       104 --P~~~liD~~G~i~~~~~G~~~~~~~~~~l~~l  135 (137)
T d1st9a_         104 --PTTFLINPEGKVVKVVTGTMTESMIHDYMNLI  135 (137)
T ss_dssp             --CEEEEECTTSEEEEEEESCCCHHHHHHHHHHH
T ss_pred             --ceEEEECCCCEEEEEEECCCCHHHHHHHHHhh
Confidence              99989987766667788999999988887653

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

Probab=97.46  E-value=0.00016  Score=55.57  Aligned_cols=92  Identities=10%  Similarity=0.010  Sum_probs=65.9

Q ss_pred             ccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcc--------------------cccchhhhhCCC
Q 013976          165 FESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED--------------------VGKPVSEYFGIT  223 (432)
Q Consensus       165 ~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~--------------------~~~~l~~~~~i~  223 (432)
                      +..|++++|.||++| ++|...++.+.+++...   +.++.++.....                    ....+...||+.
T Consensus        17 l~~Gk~vvl~FwatWC~pC~~e~p~l~~~~~~~---~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~   93 (136)
T d1z5ye1          17 LTQGKPVLLNVWATWCPTSRAEHQYLNQLSAQG---IRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVY   93 (136)
T ss_dssp             HHSSSCEEEEEECTTCHHHHHHHHHHHHHHHTT---CCEEEEEESCCHHHHHHHHHHHCCCCSEEEEESSCHHHHHHTCC
T ss_pred             HcCCCEEEEEEEcCcCCCcCccccchhhhhhhh---hhhcccccccchhhhHHHHHHcCCccceeecccchhHHHhcccC
Confidence            346788899999999 99999999999987653   222222221110                    123567889998


Q ss_pred             CCCCcEEEEEeCCCCceecCCCCCCHHHHHHHHHHHhc
Q 013976          224 GEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  261 (432)
Q Consensus       224 ~~~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  261 (432)
                      +.  |+.++++.++...+...|..+.+.+.+.|...+.
T Consensus        94 ~~--P~~~liD~~G~i~~~~~G~~~~~~l~~~i~~ll~  129 (136)
T d1z5ye1          94 GA--PETFLIDGNGIIRYRHAGDLNPRVWEEEIKPLWE  129 (136)
T ss_dssp             SB--SEEEEECTTSCEEEEEESCCCHHHHHHHTHHHHH
T ss_pred             Cc--ceEEEEcCCCEEEEEEEcCCCHHHHHHHHHHHHH
Confidence            87  9998998776666777898998888777776654

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=97.43  E-value=0.00011  Score=57.08  Aligned_cols=92  Identities=14%  Similarity=0.114  Sum_probs=67.2

Q ss_pred             CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcc------------------cccchhhhhCCCCCCC
Q 013976          167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED------------------VGKPVSEYFGITGEAP  227 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~------------------~~~~l~~~~~i~~~~~  227 (432)
                      .+++.++.||+.| ++|+...+.+.++...+...+..+.++.....                  -...+.+.||+.+.  
T Consensus        30 kgK~vll~fwa~wC~~C~~~~p~l~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~--  107 (144)
T d1knga_          30 KGKVSLVNVWASWCVPCHDEAPLLTELGKDKRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVYGV--  107 (144)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHTTCTTSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCCSS--
T ss_pred             CCCEEEEEeeccccccccccCchhhhhhhccCceeEEEEeeechHHHHHHHHHcCCccccccccccchhhhhcCcccc--
Confidence            4567788899999 99999999999988877654443333211110                  02356788898887  


Q ss_pred             cEEEEEeCCCCceecCCCCCCHHHHHHHHHHHh
Q 013976          228 KVLAYTGNDDAKKHILDGELTLDKIKTFGEDFL  260 (432)
Q Consensus       228 P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~  260 (432)
                      |+.++++.++...+.+.|..+.+.+.+.|+..+
T Consensus       108 P~~~liD~~G~i~~~~~G~~~~~~l~~~i~~~l  140 (144)
T d1knga_         108 PETFVVGREGTIVYKLVGPITPDNLRSVLLPQM  140 (144)
T ss_dssp             CEEEEECTTSBEEEEEESCCCHHHHHHTHHHHH
T ss_pred             ceEEEEcCCCeEEEEEeCCCCHHHHHHHHHHHH
Confidence            999899877666677789999999988887755

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=97.38  E-value=0.00038  Score=56.53  Aligned_cols=98  Identities=10%  Similarity=0.146  Sum_probs=71.6

Q ss_pred             CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcc--------------------------cccchhhh
Q 013976          167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED--------------------------VGKPVSEY  219 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~--------------------------~~~~l~~~  219 (432)
                      .++.++|.|+++| +.|+...+.+.+++++|++++.|+.++.....                          ....+.+.
T Consensus        31 kGk~vvl~FwatwCp~C~~~~p~l~~l~~~y~~~v~~v~i~snd~~~~~~~~~e~~~~~~~~~~~~~p~l~D~~~~~~~~  110 (187)
T d2cvba1          31 HEPLLAVVFMCNHCPYVKGSIGELVALAERYRGKVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVAKA  110 (187)
T ss_dssp             CSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHHHHH
T ss_pred             CCCeEEEEEeCCCCccchhhhhhhhhhhhhccccceeeeeeccccccccccchHHHHHHHHHhCCcceeeechhhhhccc
Confidence            4567788899999 99999999999999999998888888653200                          12456677


Q ss_pred             hCCCCCCCcEEEEEeCCCCceec--CC------CCCCHHHHHHHHHHHhcCCcCc
Q 013976          220 FGITGEAPKVLAYTGNDDAKKHI--LD------GELTLDKIKTFGEDFLEGKLKP  266 (432)
Q Consensus       220 ~~i~~~~~P~i~i~~~~~~~~y~--~~------~~~~~~~i~~fi~~~~~g~l~~  266 (432)
                      ||+...  |+.++++.+....|.  .+      ...+...|.+-|+..++|+..+
T Consensus       111 ~~v~~~--P~~~liD~~G~i~y~G~idd~~~~~~~~~~~~L~~Ai~~ll~g~~~~  163 (187)
T d2cvba1         111 YRALRT--PEVFLFDERRLLRYHGRVNDNPKDPSKVQSHDLEAAIEALLRGEEPP  163 (187)
T ss_dssp             TTCCEE--SEEEEECTTCBEEEEECSSSCTTCGGGCCCCHHHHHHHHHHTTCCCC
T ss_pred             ccccce--eeEEEEcCCCeEEEEeeecCCCCCCCCCCHHHHHHHHHHHHcCCCCC
Confidence            888776  989888776533332  11      1245567999999999987543

>d1a8ya3 c.47.1.3 (A:229-347) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.31  E-value=0.0013  Score=46.46  Aligned_cols=104  Identities=15%  Similarity=0.235  Sum_probs=74.6

Q ss_pred             eeecCCCchhhhccCCC-cceEEEEEeC--cchhhhHHHHHHHHHhccC--ceEEEEEecCCcccccchh----hhhCCC
Q 013976          153 VTIFTRENAPSVFESPI-KNQLLLFAVS--NDSEKLLPVFEEAAKSFKG--KLIFVYVQMDNEDVGKPVS----EYFGIT  223 (432)
Q Consensus       153 v~~l~~~~~~~~~~~~~-~~~i~~~~~~--~~~~~~~~~~~~~a~~~~~--~i~f~~vd~~~~~~~~~l~----~~~~i~  223 (432)
                      ...+..++....-.... -.+|+.|+..  ++..+++..++++|+.+.+  ++.|+++|.+.+.   -+.    +.|||.
T Consensus         2 lrKl~~e~m~e~W~dd~~g~~IvAFaee~d~dG~eFl~ilk~vA~~nt~n~~LsivWIDPD~FP---lm~~yWe~tF~ID   78 (119)
T d1a8ya3           2 LRKLKPESMYETWEDDMDGIHIVAFAEEADPDGYEFLEILKSVAQDNTDNPDLSIIWIDPDDFP---LLVPYWEKTFDID   78 (119)
T ss_dssp             EEECCTTTHHHHHTCCBTTEEEEEECCTTSHHHHHHHHHHHHHHHHSTTCSSCCEEEECGGGCT---TTHHHHHHHHTCC
T ss_pred             ccccchHHHHHHHhcccCCceEEEEecCCCccHHHHHHHHHHHHHHcCcCCCceEEEECCcccc---hHHHHHHHhcCCC
Confidence            34566777666544332 2367778776  6778899999999999985  4999999999843   332    678998


Q ss_pred             CCCCcEEEEEeCCC--CceecCCC---CCCHHHHHHHHHHHh
Q 013976          224 GEAPKVLAYTGNDD--AKKHILDG---ELTLDKIKTFGEDFL  260 (432)
Q Consensus       224 ~~~~P~i~i~~~~~--~~~y~~~~---~~~~~~i~~fi~~~~  260 (432)
                      -. -|+|.+.+...  +..+.+.+   ..+.+.+..||++++
T Consensus        79 l~-~PqIGVVdv~dadSvW~~~~~~~d~~t~~~Le~WiedVl  119 (119)
T d1a8ya3          79 LS-APQIGVVNVTDADSVWMEMDDEEDLPSAEELEDWLEDVL  119 (119)
T ss_dssp             TT-SCEEEEEETTTCCEEECC-------CCHHHHHHHHHHHC
T ss_pred             CC-CCceeeEecccCcceeeecccccccccHHHHHHHHHHhC
Confidence            76 49999987654  45677744   248999999999864

>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.13  E-value=0.00086  Score=49.45  Aligned_cols=85  Identities=16%  Similarity=0.177  Sum_probs=62.2

Q ss_pred             CCcEEEEEeC--CCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc----ccCCCCCCceEEEEeCCCcccCceec
Q 013976          297 SKDVLLEIYA--PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH----HRAKSDGFPTILFFPAGNKSFDPINV  370 (432)
Q Consensus       297 ~~~~lv~f~~--~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~----~~~~i~~~P~i~~~~~g~~~~~~~~y  370 (432)
                      .++|-+.++.  ..|..|..+...+++++..= +  ++.+...+.+....    .++++...|++++..+|..  .-++|
T Consensus        21 ~~pV~l~~~~~~~~~~~~~e~~~ll~ela~lS-d--ki~~~~~~~~~~e~~~~~~~~~ver~Ps~~i~~~g~~--~gIrF   95 (119)
T d1a8la1          21 VNPVKLIVFVRKDHCQYCDQLKQLVQELSELT-D--KLSYEIVDFDTPEGKELAKRYRIDRAPATTITQDGKD--FGVRY   95 (119)
T ss_dssp             CSCEEEEEEECSSSCTTHHHHHHHHHHHHTTC-T--TEEEEEEETTSHHHHHHHHHTTCCSSSEEEEEETTBC--CSEEE
T ss_pred             CCCEEEEEEecCCCchhHHHHHHHHHHHHhhC-C--CeEEEEeccCcchhhhHHHhhccccCceEEEecCCcc--cceEE
Confidence            4665444443  46999999999999886653 3  68888888765432    6899999999999988765  35799


Q ss_pred             cCCCCHHHHHHHHHhc
Q 013976          371 DVDRTVVALYKFLKKN  386 (432)
Q Consensus       371 ~g~~~~~~l~~fi~~~  386 (432)
                      .|-..-..+..||...
T Consensus        96 ~GiP~GhEf~SlilaI  111 (119)
T d1a8la1          96 FGLPAGHEFAAFLEDI  111 (119)
T ss_dssp             ESCCCTTHHHHHHHHH
T ss_pred             EeccCchhHHHHHHHH
Confidence            9977666666666543

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

Probab=97.13  E-value=0.00051  Score=46.28  Aligned_cols=64  Identities=11%  Similarity=0.131  Sum_probs=46.5

Q ss_pred             EEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc-----ccCCCCCCceEEEEeCCCcccCceeccCCCC
Q 013976          301 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----HRAKSDGFPTILFFPAGNKSFDPINVDVDRT  375 (432)
Q Consensus       301 lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-----~~~~i~~~P~i~~~~~g~~~~~~~~y~g~~~  375 (432)
                      ++.|..+||++|..+...|.+.        ++.+..+|++.++.     ...+..++|.+++  +|+       +-|+.+
T Consensus         3 v~iYt~~~C~~C~~ak~~L~~~--------~i~~~~~~i~~~~~~~~~~~~~g~~tvP~i~i--~g~-------~igGf~   65 (74)
T d1r7ha_           3 ITLYTKPACVQCTATKKALDRA--------GLAYNTVDISLDDEARDYVMALGYVQAPVVEV--DGE-------HWSGFR   65 (74)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT--------TCCCEEEETTTCHHHHHHHHHTTCBCCCEEEE--TTE-------EEESCC
T ss_pred             EEEEeCCCChhHHHHHHHHHHc--------CCceEEEEccCCHHHHHHHHHhCCCCcCEEEE--CCE-------EEeCCC
Confidence            5789999999999988777664        57778888887765     3468889998754  443       334556


Q ss_pred             HHHHHH
Q 013976          376 VVALYK  381 (432)
Q Consensus       376 ~~~l~~  381 (432)
                      .+.|.+
T Consensus        66 ~d~l~~   71 (74)
T d1r7ha_          66 PERIKQ   71 (74)
T ss_dssp             HHHHHH
T ss_pred             HhHHHH
Confidence            666654

>d1a8ya2 c.47.1.3 (A:127-228) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.99  E-value=0.0015  Score=46.64  Aligned_cols=88  Identities=14%  Similarity=0.150  Sum_probs=63.0

Q ss_pred             hhhccCCCcceEEEEEeCcchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCcee
Q 013976          162 PSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKH  241 (432)
Q Consensus       162 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y  241 (432)
                      ..++.....+.|+-|....+ ......|.++|..+++.+.|+...      .+.+++.+|++ .  |.++++.+=...+.
T Consensus        11 ~~F~~~~d~v~VvGfF~~~~-~~~~~~F~~~A~~~rd~~~F~~t~------d~~va~~~~v~-~--~~vvlfr~fde~~~   80 (102)
T d1a8ya2          11 QAFENIEDEIKLIGYFKNKD-SEHYKAFKEAAEEFHPYIPFFATF------DSKVAKKLTLK-L--NEIDFYEAFMEEPV   80 (102)
T ss_dssp             HHHTTCCSSCEEEEECSSTT-CHHHHHHHHHHHHHTTTSCEEEEC------CHHHHHHHCCC-T--TCEEEECTTCSSEE
T ss_pred             HHHhccCCCEEEEEEECCCC-cHHHHHHHHHHHHcCCCceEEEEC------CHHHHHHcCCC-C--CCEEEeeecCCCce
Confidence            34444333455554444322 235567899999999989999876      34789999995 3  88888876555677


Q ss_pred             cCCCC-CCHHHHHHHHHHH
Q 013976          242 ILDGE-LTLDKIKTFGEDF  259 (432)
Q Consensus       242 ~~~~~-~~~~~i~~fi~~~  259 (432)
                      .|.|. .+.++|.+||.+.
T Consensus        81 ~~~~~~~t~~~i~~Fi~~n   99 (102)
T d1a8ya2          81 TIPDKPNSEEEIVNFVEEH   99 (102)
T ss_dssp             ECSSSSCCHHHHHHHHHHT
T ss_pred             ecCCCCCCHHHHHHHHHHh
Confidence            78884 8999999999884

>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Hypothetical protein EF0770
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.97  E-value=0.0016  Score=51.68  Aligned_cols=43  Identities=9%  Similarity=0.026  Sum_probs=34.3

Q ss_pred             CcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCC
Q 013976          298 KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT  340 (432)
Q Consensus       298 ~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~  340 (432)
                      +..|+.|....|++|..+.+.+.++...+.+...+.+......
T Consensus        25 ~v~I~ef~d~~Cp~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~   67 (172)
T d1z6ma1          25 PVKMIEFINVRCPYCRKWFEESEELLAQSVKSGKVERIIKLFD   67 (172)
T ss_dssp             SEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEECC
T ss_pred             CEEEEEEECCCCHhHHHHHHHHhhhhhhhccccceeeeecccc
Confidence            4469999999999999999999999988876445666665543

>d1bjxa_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.0031  Score=45.92  Aligned_cols=97  Identities=12%  Similarity=0.142  Sum_probs=68.9

Q ss_pred             ccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCcccccCCCCCCceEEEEeCCCcccC
Q 013976          287 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFD  366 (432)
Q Consensus       287 ~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~~~~~i~~~P~i~~~~~g~~~~~  366 (432)
                      ...+.++ +.+..++|-|....-+.   ....|.++|+.+++   +.|+.... .+-...++++. |+|++|++...  +
T Consensus         9 ~~~e~f~-~~~~v~VVGfF~~~~~~---~~~~F~~~A~~~~d---~~F~~t~~-~~v~~~~~v~~-~~Ivl~k~~de--~   77 (110)
T d1bjxa_           9 AAAESLV-ESSEVAVIGFFKDVESD---SAKQFLQAAEAIDD---IPFGITSN-SDVFSKYQLDK-DGVVLFKKFDE--G   77 (110)
T ss_dssp             HHHHHHH-HHSSEEEEEECTTTTSH---HHHHHHHHHHHCSS---SCEEEECC-SHHHHHTTCSS-CEEEEEESSSS--S
T ss_pred             HHHHHHh-ccCCeEEEEEEcCCCch---HHHHHHHHHHhCcC---ceEEEECC-HHHHHHcCCCC-CeEEEeccCCc--c
Confidence            4555555 45566677676654333   35678999999854   77777552 22236778865 99999998765  4


Q ss_pred             ceeccCCCCHHHHHHHHHhcCCCCCccc
Q 013976          367 PINVDVDRTVVALYKFLKKNASIPFKIQ  394 (432)
Q Consensus       367 ~~~y~g~~~~~~l~~fi~~~~~~~~~~~  394 (432)
                      ...|.|..+.+.|.+||..++-+.+...
T Consensus        78 ~~~~~~~~~~~~l~~fi~~~~~PlV~e~  105 (110)
T d1bjxa_          78 RNNFEGEVTKENLLDFIKHNQLPLVIEF  105 (110)
T ss_dssp             BCCCCSCCCHHHHHHHHHHHSSCCCSSC
T ss_pred             ccccCCCCCHHHHHHHHHHcCcCcEEec
Confidence            5678889999999999999998766543

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

Probab=96.89  E-value=0.00048  Score=46.68  Aligned_cols=49  Identities=8%  Similarity=0.116  Sum_probs=39.8

Q ss_pred             EEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc-----ccCCCCCCceEEE
Q 013976          301 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----HRAKSDGFPTILF  357 (432)
Q Consensus       301 lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-----~~~~i~~~P~i~~  357 (432)
                      ++.|..+||+.|..+...|.+.        ++.+..+|++.+..     ...+..++|.+++
T Consensus         3 i~iYs~~~C~~C~~ak~~L~~~--------~i~y~~~~i~~~~~~~~~~~~~g~~tvP~i~i   56 (76)
T d1h75a_           3 ITIYTRNDCVQCHATKRAMENR--------GFDFEMINVDRVPEAAEALRAQGFRQLPVVIA   56 (76)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT--------TCCCEEEETTTCHHHHHHHHHTTCCSSCEEEE
T ss_pred             EEEEeCCCCccHHHHHHHHHhc--------CceeEEEeecCCHHHHHHHHhcCCCCCCEEEE
Confidence            5788999999999988877665        57888889988765     2458889999876

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.88  E-value=0.00025  Score=51.07  Aligned_cols=82  Identities=9%  Similarity=0.041  Sum_probs=60.3

Q ss_pred             cCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCceecCC
Q 013976          166 ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILD  244 (432)
Q Consensus       166 ~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~  244 (432)
                      .+..+.+++|+.+| +.|+.+.+.+++++..|..  .++.+|...   ++.+.+.|+++ .  |++++ + ++ .  .+.
T Consensus        13 ~~~~p~i~lft~~~C~~C~~a~~~L~~~~~~~~~--~~v~vd~~~---~~~l~~~y~~~-V--Pvl~i-d-g~-~--~~~   79 (100)
T d1wjka_          13 NRALPVLTLFTKAPCPLCDEAKEVLQPYKDRFIL--QEVDITLPE---NSTWYERYKFD-I--PVFHL-N-GQ-F--LMM   79 (100)
T ss_dssp             CCCCCEEEEEECSSCHHHHHHHHHTSTTSSSSEE--EEEETTSST---THHHHHHSSSS-C--SEEEE-S-SS-E--EEE
T ss_pred             CCCCCEEEEEECCCCCChHHHHHHHHHhhhhcce--EEEeccccc---CHHHHHHhccc-C--Cceee-c-Cc-e--EEe
Confidence            34446677777888 9999999999998887763  455556655   67899999985 4  98865 2 22 1  245


Q ss_pred             CCCCHHHHHHHHHHHh
Q 013976          245 GELTLDKIKTFGEDFL  260 (432)
Q Consensus       245 ~~~~~~~i~~fi~~~~  260 (432)
                      |.++.+.|.+++++..
T Consensus        80 g~~d~~~L~~~L~~l~   95 (100)
T d1wjka_          80 HRVNTSKLEKQLRKLS   95 (100)
T ss_dssp             SSCCHHHHHHHHHSSS
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            7799999999998854

>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Bacterioferritin comigratory protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=96.86  E-value=0.00058  Score=53.82  Aligned_cols=93  Identities=10%  Similarity=0.100  Sum_probs=59.9

Q ss_pred             cCCCcEEEEEe-CCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc-----------------------ccCCC-
Q 013976          295 DESKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----------------------HRAKS-  349 (432)
Q Consensus       295 ~~~~~~lv~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-----------------------~~~~i-  349 (432)
                      ..+++++|.|| +.||..|....+.+.++...+... .+.++.+..+....                       ..+++ 
T Consensus        28 ~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~-~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~  106 (160)
T d2cx4a1          28 KRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKA-NAEVLAISVDSPWCLKKFKDENRLAFNLLSDYNREVIKLYNVY  106 (160)
T ss_dssp             TTSSCEEEEECSCTTCHHHHHHHHHHHHTCTTTSTT-CCEEEEEESSCHHHHHHHHHHHTCSSEEEECTTSHHHHHTTCE
T ss_pred             hCCCEEEEEecccccCCchhhhhhhhhccccccccc-ccccccccccchhhhhhhcccceeeEEEeecCCcchHHHcCcc
Confidence            35688888888 899999999889999888888764 56666666543111                       12233 


Q ss_pred             ---------CCCceEEEE-eCCCcccCcee--ccCCCCHHHHHHHHHhcCC
Q 013976          350 ---------DGFPTILFF-PAGNKSFDPIN--VDVDRTVVALYKFLKKNAS  388 (432)
Q Consensus       350 ---------~~~P~i~~~-~~g~~~~~~~~--y~g~~~~~~l~~fi~~~~~  388 (432)
                               ...|+.+++ ++|......+.  ..+..+.+.+++-+++.++
T Consensus       107 ~~~~~~~~~~~~~~~flId~~G~I~~~~~~~~~~~~~~~~eil~~l~~l~~  157 (160)
T d2cx4a1         107 HEDLKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDYDEVVREANKIAG  157 (160)
T ss_dssp             EEEETTEEEEECCEEEEECTTSBEEEEEECSSTTCCCCHHHHHHHHHHHHT
T ss_pred             ccccccccccceeeEEEEcCCCEEEEEEEeCCCCCCCCHHHHHHHHHHHcc
Confidence                     346888888 44543210000  1234578888888877654

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.66  E-value=0.0029  Score=48.01  Aligned_cols=70  Identities=13%  Similarity=0.213  Sum_probs=49.3

Q ss_pred             ccCCCcceEEEEEeC-cchhhhHHHHHHHHHh--ccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCC
Q 013976          165 FESPIKNQLLLFAVS-NDSEKLLPVFEEAAKS--FKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDA  238 (432)
Q Consensus       165 ~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~--~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~  238 (432)
                      ..++++++|.|+++| ++|+.+.+.+.+...-  ...++..+.+|++..   ...+. +.......|+++++++++.
T Consensus        22 ~~~~Kpvlv~F~a~wC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~---~~~~~-~~~~~~~~Pt~~~~d~~G~   94 (135)
T d1sena_          22 AASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEE---PKDED-FSPDGGYIPRILFLDPSGK   94 (135)
T ss_dssp             HHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGS---CSCGG-GCTTCSCSSEEEEECTTSC
T ss_pred             HHcCCcEEEEEEecCCCCceecchhhhhhHHHHHhcCCcEEEeCCCCcC---HHHHH-HHhhcccceeEEEECCCCe
Confidence            456778899999999 9999999988665443  335688889998764   24333 3333334699999976653

>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli [TaxId: 562]

Probab=96.62  E-value=0.0013  Score=45.61  Aligned_cols=73  Identities=12%  Similarity=0.093  Sum_probs=52.8

Q ss_pred             EEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--c------cCCCCCCceEEEEeCCCcccCceeccC
Q 013976          301 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--H------RAKSDGFPTILFFPAGNKSFDPINVDV  372 (432)
Q Consensus       301 lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~------~~~i~~~P~i~~~~~g~~~~~~~~y~g  372 (432)
                      +|.|..+||++|......|.++...+.+   +.+..+|++.+..  .      ...+.++|.|.+  +|+       +-|
T Consensus         3 vviysk~~Cp~C~~aK~ll~~~~~~~~~---i~~~~~~~~~~~~~~~~~~~~~~~~~~tvPqIfi--~g~-------~IG   70 (85)
T d1egoa_           3 TVIFGRSGCPYCVRAKDLAEKLSNERDD---FQYQYVDIRAEGITKEDLQQKAGKPVETVPQIFV--DQQ-------HIG   70 (85)
T ss_dssp             EEEECCTTSTHHHHHHHHHHHHHHHHSS---CEEEEECHHHHTCCSHHHHHHTCCCSCCSCEEEE--TTE-------EEE
T ss_pred             EEEEeCCCCHhHHHHHHHHHHcCCCCCC---ceEEEEecCCCHHHHHHHHHHhcCCCCCCCEEEE--CCE-------EEE
Confidence            6789999999999999999999988886   6777777665543  1      134578999755  553       345


Q ss_pred             CCCHHHHHHHHHhcC
Q 013976          373 DRTVVALYKFLKKNA  387 (432)
Q Consensus       373 ~~~~~~l~~fi~~~~  387 (432)
                      +.  .+|.++++++.
T Consensus        71 G~--~el~~~~~~~~   83 (85)
T d1egoa_          71 GY--TDFAAWVKENL   83 (85)
T ss_dssp             SS--HHHHHHHHHHH
T ss_pred             CH--HHHHHHHHhcC
Confidence            44  46777777653

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

Probab=96.61  E-value=0.0022  Score=49.32  Aligned_cols=73  Identities=11%  Similarity=0.054  Sum_probs=53.6

Q ss_pred             CCCcceEEEEEeC-cchhhhHHHHHHHHHhccC--ceEEEEEecCCcc----------------c-----ccchhhhhCC
Q 013976          167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG--KLIFVYVQMDNED----------------V-----GKPVSEYFGI  222 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~--~i~f~~vd~~~~~----------------~-----~~~l~~~~~i  222 (432)
                      .++.+++.|+++| ++|+..++.+.++.+++++  .+.++.|..+...                +     ...+.+.||+
T Consensus        27 ~GK~vll~FwAtWC~pC~~~~p~L~~l~~~~~~~~~~~vi~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~y~v  106 (144)
T d1i5ga_          27 AGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDV  106 (144)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEEecCCchHhhhhHhHHHHHHHHHhccCcEEEEEeccccHHHHHHHHHhCCCCceeeEChHHHHHHHHHCCC
Confidence            4667778899999 9999999999999999975  4666777655321                0     0125677899


Q ss_pred             CCCCCcEEEEEeCCCCcee
Q 013976          223 TGEAPKVLAYTGNDDAKKH  241 (432)
Q Consensus       223 ~~~~~P~i~i~~~~~~~~y  241 (432)
                      .+.  |++++++.++++.+
T Consensus       107 ~~i--Pt~~lid~~~G~vi  123 (144)
T d1i5ga_         107 KSI--PTLVGVEADSGNII  123 (144)
T ss_dssp             CSS--SEEEEEETTTCCEE
T ss_pred             CCc--CEEEEEeCCCCEEE
Confidence            887  99999987544443

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=96.57  E-value=0.0027  Score=48.84  Aligned_cols=72  Identities=15%  Similarity=0.146  Sum_probs=52.9

Q ss_pred             CCCcceEEEEEeC-cchhhhHHHHHHHHHhccC--ceEEEEEecCCcc----------------c-----ccchhhhhCC
Q 013976          167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG--KLIFVYVQMDNED----------------V-----GKPVSEYFGI  222 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~--~i~f~~vd~~~~~----------------~-----~~~l~~~~~i  222 (432)
                      .++.++|.|+++| ++|+...+.+.+++++|..  .+.++.+..+...                +     ...+.+.||+
T Consensus        27 ~GK~vvl~FwatwC~~C~~~~p~l~~l~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~v  106 (144)
T d1o73a_          27 VGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGV  106 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHTC
T ss_pred             CCCEEEEEeChhhCccchhhhHHHHHHHHHHhhccCeEEEEEecchhHHHHHHHHHhccccceeeeccchHHHHHHHcCC
Confidence            4667788899999 8999999999999999954  4777777654322                0     0135678898


Q ss_pred             CCCCCcEEEEEeCCCCce
Q 013976          223 TGEAPKVLAYTGNDDAKK  240 (432)
Q Consensus       223 ~~~~~P~i~i~~~~~~~~  240 (432)
                      .+.  |++++++.+.+..
T Consensus       107 ~~~--Pt~~lID~~~G~I  122 (144)
T d1o73a_         107 ESI--PTLITINADTGAI  122 (144)
T ss_dssp             CSS--SEEEEEETTTCCE
T ss_pred             CcC--CEEEEEECCCCEE
Confidence            887  9999998654333

>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.49  E-value=0.0022  Score=50.13  Aligned_cols=80  Identities=15%  Similarity=0.240  Sum_probs=56.0

Q ss_pred             CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCC----------------------------------
Q 013976          296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT----------------------------------  341 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~----------------------------------  341 (432)
                      +.+.+++.|..+.|++|+.+.+.+.++..   .  ++.+..+..-.                                  
T Consensus        25 ~ak~tIv~FsD~~CpyC~~~~~~l~~~~~---~--~~~~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~   99 (156)
T d1eeja1          25 QEKHVITVFTDITCGYCHKLHEQMADYNA---L--GITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVA   99 (156)
T ss_dssp             TCCEEEEEEECTTCHHHHHHHTTHHHHHH---T--TEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCC
T ss_pred             CCCEEEEEEeCCCCHHHHHHHHHHHHhhc---c--CceEEEEeccccccchhhHHHHHHHHHhhhhhhhhHHHHhccccc
Confidence            34678999999999999999999888753   2  23333332210                                  


Q ss_pred             -----ccc-------ccCCCCCCceEEEEeCCCcccCceeccCCCCHHHHHHHHHhcC
Q 013976          342 -----NEH-------HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA  387 (432)
Q Consensus       342 -----~~~-------~~~~i~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  387 (432)
                           +..       ..++|+++|+++ +.+|.      .+.|..+.+.|.++|++..
T Consensus       100 ~~~~~~~i~~~~~la~~lgv~GTPt~~-~~nG~------~v~G~~~~e~l~~~i~~~~  150 (156)
T d1eeja1         100 PASCDVDIADHYALGVQLGVSGTPAVV-LSNGT------LVPGYQPPKEMKEFLDEHQ  150 (156)
T ss_dssp             CCCCSCCHHHHHHHHHHHTCCSSSEEE-CTTSC------EEESCCCHHHHHHHHHHHH
T ss_pred             hhhhcchHHHHHHHHHHcCCcCCCEEE-EeCCe------EecCCCCHHHHHHHHHHHH
Confidence                 000       234899999965 45554      4679999999999998864

>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Glutathione peroxidase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.48  E-value=0.0022  Score=51.50  Aligned_cols=46  Identities=20%  Similarity=0.155  Sum_probs=40.3

Q ss_pred             CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCc
Q 013976          296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN  342 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~  342 (432)
                      .++.+||.++|+||+.|.+..+.|++|..+|++. .+.+.-+.|...
T Consensus        23 kGKvvLivN~AS~Cg~t~~~y~~L~~L~~ky~~~-g~~Il~fP~nqF   68 (184)
T d2f8aa1          23 RGKVLLIENVASLGGTTVRDYTQMNELQRRLGPR-GLVVLGFPCNQF   68 (184)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG-TEEEEEEECCCS
T ss_pred             CCCEEEEEEecccCCcchhhhHHHHHhhhhhccc-ceeEEEeecccc
Confidence            5789999999999999999889999999999874 688888887654

>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.45  E-value=0.0036  Score=49.53  Aligned_cols=87  Identities=11%  Similarity=0.088  Sum_probs=59.8

Q ss_pred             CCcEEEEEe-CCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc---------------------------ccCC
Q 013976          297 SKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH---------------------------HRAK  348 (432)
Q Consensus       297 ~~~~lv~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~---------------------------~~~~  348 (432)
                      ++.++|+|| +.||..|....+.|.++...+++. ++.++.|..+....                           ..|+
T Consensus        44 GK~vvl~f~p~~~~p~C~~~~~~~~~~~~~~~~~-g~~vv~is~d~~~~~~~~~~~~~~~~~~~f~ll~D~~~~v~~~yg  122 (169)
T d2bmxa1          44 GKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDR-DAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAG  122 (169)
T ss_dssp             TCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTT-TEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHT
T ss_pred             CCeEEEEEecCCCCcccccccccccccccccccc-CcceeeccccchhhhhhhcccccccccceEEEEeccHHHHHHHcC
Confidence            567888887 899999999999999999999874 67777777764211                           1224


Q ss_pred             C-----CCCceEEEEeCCCcccCcee-ccC--CCCHHHHHHHHHh
Q 013976          349 S-----DGFPTILFFPAGNKSFDPIN-VDV--DRTVVALYKFLKK  385 (432)
Q Consensus       349 i-----~~~P~i~~~~~g~~~~~~~~-y~g--~~~~~~l~~fi~~  385 (432)
                      +     ...|+.+++.....+ +.+. +..  .++.+++++.|+.
T Consensus       123 v~~~~~~~~r~~fvID~~G~I-~~~~~~~~~~~~~~~evl~~l~a  166 (169)
T d2bmxa1         123 VLNADGVADRVTFIVDPNNEI-QFVSATAGSVGRNVDEVLRVLDA  166 (169)
T ss_dssp             CBCTTSSBCEEEEEECTTSBE-EEEEEECTTCCCCHHHHHHHHHH
T ss_pred             CCccCCccceeEEEEcCCCEE-EEEEEcCCCCCCCHHHHHHHHHH
Confidence            4     567888888543333 2222 221  4677888888764

>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Vibrio cholerae [TaxId: 666]

Probab=96.43  E-value=0.0035  Score=50.00  Aligned_cols=42  Identities=26%  Similarity=0.534  Sum_probs=32.7

Q ss_pred             CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEE
Q 013976          296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKM  337 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~i  337 (432)
                      +.++.+|.|....|++|+.+.+.+..+.+.+.....+....+
T Consensus        17 ~~~~~Ivef~d~~Cp~C~~~~~~~~~l~~~~~~~~~~~~~~~   58 (181)
T d1beda_          17 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKFQKNHV   58 (181)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHTSCTTCEEEEEEC
T ss_pred             CCCCEEEEEECCCCccchhhhhhhhhHhhhcccccceeEEec
Confidence            356789999999999999999999999888876323444433

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=96.37  E-value=0.0029  Score=42.34  Aligned_cols=49  Identities=8%  Similarity=0.185  Sum_probs=38.2

Q ss_pred             EEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc-----ccCCCCCCceEEE
Q 013976          301 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----HRAKSDGFPTILF  357 (432)
Q Consensus       301 lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-----~~~~i~~~P~i~~  357 (432)
                      +++|..++|+.|..+...|.+.        ++.+..+|++.+..     ...+..++|.|.+
T Consensus         7 I~iYs~~~C~~C~~ak~lL~~~--------~i~~~~~~v~~~~~~~~~~~~~~~~tvP~i~i   60 (74)
T d1nm3a1           7 ISIFTKPGCPFCAKAKQLLHDK--------GLSFEEIILGHDATIVSVRAVSGRTTVPQVFI   60 (74)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH--------TCCCEEEETTTTCCHHHHHHHTCCSSSCEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHc--------CCCeEEEEccCcHHHHHHHHHhCCccCCEEEE
Confidence            6789999999999998888776        57777788877665     2346788998744

>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=96.31  E-value=0.0035  Score=48.56  Aligned_cols=80  Identities=14%  Similarity=0.150  Sum_probs=55.3

Q ss_pred             CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCC-----------------------------------
Q 013976          297 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT-----------------------------------  341 (432)
Q Consensus       297 ~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~-----------------------------------  341 (432)
                      .+.+++.|..+.|++|+.+.+.+..+.....   .+.+.......                                   
T Consensus        26 ak~~I~~FsD~~CPyC~~~~~~l~~l~~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~~~~~~~~~~~~  102 (150)
T d1t3ba1          26 EKHVVTVFMDITCHYCHLLHQQLKEYNDLGI---TVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPKEVK  102 (150)
T ss_dssp             CSEEEEEEECTTCHHHHHHHTTHHHHHHTTE---EEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCSSCC
T ss_pred             CCEEEEEEECCCCHHHHHHhHHHHHHhccCc---eEEEEEecccccchhHHHHHHHHHHhhhHHHhhHhHhhhccccchh
Confidence            4668999999999999999999888864321   23333322111                                   


Q ss_pred             --ccc-------ccCCCCCCceEEEEeCCCcccCceeccCCCCHHHHHHHHHhc
Q 013976          342 --NEH-------HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKN  386 (432)
Q Consensus       342 --~~~-------~~~~i~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~  386 (432)
                        +..       ..++|+++|++++ .+|.      ...|..+.+.|.++|++-
T Consensus       103 ~~~~i~~~~~la~~lGv~GTPt~~~-~nG~------~i~G~~~~~~l~~~l~~~  149 (150)
T d1t3ba1         103 TPNIVKKHYELGIQFGVRGTPSIVT-STGE------LIGGYLKPADLLRALEET  149 (150)
T ss_dssp             CSSHHHHHHHHHHHHTCCSSCEEEC-TTSC------CCCSCCCHHHHHHHHHHC
T ss_pred             hhhHHHHHHHHHHhcCcCCCCEEEE-cCCc------EecCCCCHHHHHHHHHhh
Confidence              000       2349999998775 4554      468889999999999874

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

Probab=96.22  E-value=0.005  Score=47.14  Aligned_cols=72  Identities=15%  Similarity=0.149  Sum_probs=53.3

Q ss_pred             CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCc--eEEEEEecCCcc---------------------cccchhhhhCC
Q 013976          167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK--LIFVYVQMDNED---------------------VGKPVSEYFGI  222 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~--i~f~~vd~~~~~---------------------~~~~l~~~~~i  222 (432)
                      .++.++|.|+++| +.|....+.+.+++++|...  +.++.+..+...                     ....+.+.|++
T Consensus        25 ~GK~vll~Fwa~wC~~C~~~~~~l~~l~~~~~~~~~~~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~y~v  104 (144)
T d1o8xa_          25 AGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNV  104 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHHTTC
T ss_pred             CCCEEEEEeccccccccccccchhHHhhhhcccccccccccccccccHHHHHHHHhhccccceeeecccchhhHHHHcCC
Confidence            4667788899999 89999999999999999753  666666554321                     01346788899


Q ss_pred             CCCCCcEEEEEeCCCCce
Q 013976          223 TGEAPKVLAYTGNDDAKK  240 (432)
Q Consensus       223 ~~~~~P~i~i~~~~~~~~  240 (432)
                      .+.  |++++++.+.++.
T Consensus       105 ~~~--Pt~~liD~~~G~V  120 (144)
T d1o8xa_         105 ESI--PTLIGVDADSGDV  120 (144)
T ss_dssp             CSS--SEEEEEETTTCCE
T ss_pred             CcC--CEEEEEeCCCCEE
Confidence            887  9999998654443

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

Probab=96.20  E-value=0.0026  Score=43.56  Aligned_cols=49  Identities=12%  Similarity=0.196  Sum_probs=37.8

Q ss_pred             EEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc------ccCCCCCCceEEE
Q 013976          301 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------HRAKSDGFPTILF  357 (432)
Q Consensus       301 lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~------~~~~i~~~P~i~~  357 (432)
                      +..|..+||++|..+...|.+.        ++.+..+|++.+..      ...+..++|.|.+
T Consensus         3 I~iys~~~Cp~C~~ak~~L~~~--------~i~y~~~di~~~~~~~~~~~~~~g~~tvP~i~i   57 (82)
T d1fova_           3 VEIYTKETCPYCHRAKALLSSK--------GVSFQELPIDGNAAKREEMIKRSGRTTVPQIFI   57 (82)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH--------TCCCEEEECTTCSHHHHHHHHHHSSCCSCEEEE
T ss_pred             EEEEeCCCCHhHHHHHHHHHHc--------CCCeEEEeccchHHHHHHHHHHhCCCCCCeEEE
Confidence            5678899999999988877776        57788888887665      1237788998753

>d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH985, a thioredoxin
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.13  E-value=0.0057  Score=40.75  Aligned_cols=70  Identities=20%  Similarity=0.306  Sum_probs=52.5

Q ss_pred             EeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCcccccCCCCCCceEEEEeCCCcccCceeccCC-CCHHHHHHH
Q 013976          304 IYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVD-RTVVALYKF  382 (432)
Q Consensus       304 f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~~~~~i~~~P~i~~~~~g~~~~~~~~y~g~-~~~~~l~~f  382 (432)
                      ...++|..|.++....++++..+.-  ...+..+. +-.+.-+|++-++|.+++  +|+ +    .+.|. .+.++|.+|
T Consensus         6 Vlg~gC~~C~~~~~~v~~a~~e~gi--~a~v~kv~-d~~ei~~ygVmstPalvI--dg~-v----v~~G~vPs~~ei~~~   75 (77)
T d1iloa_           6 IYGTGCANCQMLEKNAREAVKELGI--DAEFEKIK-EMDQILEAGLTALPGLAV--DGE-L----KIMGRVASKEEIKKI   75 (77)
T ss_dssp             EECSSSSTTHHHHHHHHHHHHHTTC--CEEEEEEC-SHHHHHHHTCSSSSCEEE--TTE-E----EECSSCCCHHHHHHH
T ss_pred             EeCCCCccHHHHHHHHHHHHHHcCC--ceEEEEeC-CHHHHHHcCCcCCCEEEE--CCE-E----EEEecCCCHHHHHHH
Confidence            3489999999999999999988765  56666663 222224799999999876  333 2    67784 599999998


Q ss_pred             H
Q 013976          383 L  383 (432)
Q Consensus       383 i  383 (432)
                      |
T Consensus        76 L   76 (77)
T d1iloa_          76 L   76 (77)
T ss_dssp             C
T ss_pred             h
Confidence            6

>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.10  E-value=0.014  Score=42.69  Aligned_cols=88  Identities=18%  Similarity=0.240  Sum_probs=63.7

Q ss_pred             CcceEEEEEeC---cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCceecCCC
Q 013976          169 IKNQLLLFAVS---NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDG  245 (432)
Q Consensus       169 ~~~~i~~~~~~---~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~  245 (432)
                      .++.+.+|..+   +.|+.+...++++|.- .+++.+...|....+ ++++++.||+...  |++++...+......|.|
T Consensus        22 ~pV~l~~~~~~~~~~~~~e~~~ll~ela~l-Sdki~~~~~~~~~~e-~~~~~~~~~ver~--Ps~~i~~~g~~~gIrF~G   97 (119)
T d1a8la1          22 NPVKLIVFVRKDHCQYCDQLKQLVQELSEL-TDKLSYEIVDFDTPE-GKELAKRYRIDRA--PATTITQDGKDFGVRYFG   97 (119)
T ss_dssp             SCEEEEEEECSSSCTTHHHHHHHHHHHHTT-CTTEEEEEEETTSHH-HHHHHHHTTCCSS--SEEEEEETTBCCSEEEES
T ss_pred             CCEEEEEEecCCCchhHHHHHHHHHHHHhh-CCCeEEEEeccCcch-hhhHHHhhccccC--ceEEEecCCcccceEEEe
Confidence            35667777754   4577888888888765 467999888887654 6678999999987  999988765433455667


Q ss_pred             CCCHHHHHHHHHHHh
Q 013976          246 ELTLDKIKTFGEDFL  260 (432)
Q Consensus       246 ~~~~~~i~~fi~~~~  260 (432)
                      -..-.++..||..++
T Consensus        98 iP~GhEf~SlilaIl  112 (119)
T d1a8la1          98 LPAGHEFAAFLEDIV  112 (119)
T ss_dssp             CCCTTHHHHHHHHHH
T ss_pred             ccCchhHHHHHHHHH
Confidence            666666677776654

>d2b5ea2 c.47.1.2 (A:142-239) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.08  E-value=0.009  Score=40.23  Aligned_cols=85  Identities=16%  Similarity=0.240  Sum_probs=58.0

Q ss_pred             HHHHHHhhcCC--eEEEEEecCCCcchHHHHHHHh-ccCCCceEEEeCcHHHHhHcCCCCCCCCCeEEEEecCC-Cceec
Q 013976           55 DEAERVLTSET--KVVLGYLNSLVGSESEVLADAS-RLEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKET-EKISY  130 (432)
Q Consensus        55 ~~l~~~~~~~~--~~vv~f~~~~~~~~~~~f~~~a-~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~i~l~~~~~-~~~~~  130 (432)
                      ++++.++....  +.+|..+.-.+...-+.|.++| .+++++.|....+.+           ..|.+.+|=+.. ..+..
T Consensus         6 ~dl~~~l~n~t~v~pVVV~~Gv~d~~fNeTF~~~A~~l~~Dy~Fvs~~~~~-----------~~~kLsV~LP~e~dEPIv   74 (98)
T d2b5ea2           6 ADLPAYLANETFVTPVIVQSGKIDADFNATFYSMANKHFNDYDFVSAENAD-----------DDFKLSIYLPSAMDEPVV   74 (98)
T ss_dssp             SCHHHHHHHSCCSSCEEEEEESCCHHHHHHHHHHHHHTTTTCEEEEEECTT-----------SCCEEEEEETTEEEEEEE
T ss_pred             hhhHHHHhcCcccCCEEEeCCccccchhHHHHHHHHHhhcceEEEeccCCC-----------CCccEEEECCCCCCCCeE
Confidence            44556665443  2333344434456777899999 899999999966421           137788887764 37889


Q ss_pred             ccCCCC----CHHHHHHHHHhcCCC
Q 013976          131 FADGKF----DKSTIADFVFSNKLP  151 (432)
Q Consensus       131 y~~g~~----~~~~l~~fi~~~~~p  151 (432)
                      | .|+.    +.+.+.+||+-.++|
T Consensus        75 f-~G~~~~i~~a~~l~~WlkVe~lP   98 (98)
T d2b5ea2          75 Y-NGKKADIADADVFEKWLQVEALP   98 (98)
T ss_dssp             C-CSCHHHHTSHHHHHHHHHHHSSC
T ss_pred             E-cCccCCcccHHHHHHHHeeeccC
Confidence            9 8863    567799999988776

>d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein XCC2852
species: Xanthomonas campestris [TaxId: 339]

Probab=96.06  E-value=0.011  Score=39.37  Aligned_cols=70  Identities=11%  Similarity=0.053  Sum_probs=47.9

Q ss_pred             EEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCcccCceeccCCCCHHH
Q 013976          301 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVA  378 (432)
Q Consensus       301 lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~~~g~~~~~~~~y~g~~~~~~  378 (432)
                      |.+|..++|..|..+...+.+    ..   .+.+..+|++.++.  .+|+.. +|.+.  .+|..     ...-..+.+.
T Consensus         2 ltLyt~~~C~LCe~A~~~l~~----~~---~~~~~~vdI~~d~~l~~~y~~~-IPVl~--~~~~~-----~l~w~fd~~~   66 (75)
T d1ttza_           2 LTLYQRDDCHLCDQAVEALAQ----AR---AGAFFSVFIDDDAALESAYGLR-VPVLR--DPMGR-----ELDWPFDAPR   66 (75)
T ss_dssp             EEEEECSSCHHHHHHHHHHHH----TT---CCCEEEEECTTCHHHHHHHTTT-CSEEE--CTTCC-----EEESCCCHHH
T ss_pred             EEEECCCCccHHHHHHHHHHh----cc---CCcEEEEEccCCHHHHHHhCCe-eeEEE--ECCee-----EEcCccCHHH
Confidence            678999999999877554432    11   46788889988766  577755 89654  23332     2223579999


Q ss_pred             HHHHHHh
Q 013976          379 LYKFLKK  385 (432)
Q Consensus       379 l~~fi~~  385 (432)
                      |.+||..
T Consensus        67 l~~~L~~   73 (75)
T d1ttza_          67 LRAWLDA   73 (75)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhc
Confidence            9999864

>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Crithidia fasciculata [TaxId: 5656]

Probab=95.99  E-value=0.0036  Score=49.44  Aligned_cols=45  Identities=16%  Similarity=0.191  Sum_probs=38.0

Q ss_pred             CCCcEEEEEe-CCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCC
Q 013976          296 ESKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT  341 (432)
Q Consensus       296 ~~~~~lv~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~  341 (432)
                      .++.++|+|| +.||..|....+.|.++...+.+. ++.++-|+.+.
T Consensus        32 ~GK~vVl~F~p~~~c~~C~~e~~~l~~~~~~~~~~-~~~v~~is~d~   77 (167)
T d1e2ya_          32 KGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAEI-NTEVISCSCDS   77 (167)
T ss_dssp             TTSEEEEEECSCSSCSSCCHHHHHHHHTHHHHHTT-TEEEEEEESSC
T ss_pred             CCCeEEEEEcccccccccchhhHHHHHHHHHhhcC-ceEEEeecCCc
Confidence            3568899998 999999999999999999999874 67777777654

>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin
species: Aeropyrum pernix [TaxId: 56636]

Probab=95.98  E-value=0.019  Score=47.71  Aligned_cols=90  Identities=10%  Similarity=0.080  Sum_probs=63.2

Q ss_pred             cCCCcEEEEEe-CCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc-----------------------------
Q 013976          295 DESKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----------------------------  344 (432)
Q Consensus       295 ~~~~~~lv~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-----------------------------  344 (432)
                      .+++.++++|| +.||..|..-.+.|.++...|+.. ++.++-+.++....                             
T Consensus        27 ~kGk~vVLff~P~dftpvCttEl~~~~~~~~ef~~~-g~~vigiS~Ds~~sh~~w~~~~~~~~~~~l~fpllsD~~~~va  105 (237)
T d2zcta1          27 SQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRL-GVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVA  105 (237)
T ss_dssp             TTTCEEEEEEESCSSCHHHHHHHHHHHHTHHHHHHT-TEEEEEEESSCHHHHHHHHHHHHHHHCCCCCSCEEECGGGHHH
T ss_pred             cCCCEEEEEEECCCCCccCHHHHHHHHhhhhhhccC-CcceeeccCCcHHHHHHHhhhhhhhcccccccccccCcchHHH
Confidence            35677888888 999999999999999999999864 67777777664210                             


Q ss_pred             ccCCC-------CCCceEEEEeCCCcccCceecc---CCCCHHHHHHHHHhc
Q 013976          345 HRAKS-------DGFPTILFFPAGNKSFDPINVD---VDRTVVALYKFLKKN  386 (432)
Q Consensus       345 ~~~~i-------~~~P~i~~~~~g~~~~~~~~y~---g~~~~~~l~~fi~~~  386 (432)
                      ..|++       ...|++.++-....+ +.+.+.   -+++++++++.|+..
T Consensus       106 k~yGv~~~~~~~~~~RatFIIDpdG~I-r~~~~~~~~~gR~~dEiLr~l~aL  156 (237)
T d2zcta1         106 RRLGLLHAESATHTVRGVFIVDARGVI-RTMLYYPMELGRLVDEILRIVKAL  156 (237)
T ss_dssp             HHTTCC----CCTTCCEEEEECTTSBE-EEEEECCTTBCCCHHHHHHHHHHH
T ss_pred             HHcCCccccccccceeeeEEECCCCEE-EEEEEeCCCCCCCHHHHHHHHHHH
Confidence            12454       467999888544444 333222   267899999988643

>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Thiol:disulfide interchange protein DsbG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.83  E-value=0.022  Score=44.81  Aligned_cols=79  Identities=10%  Similarity=0.111  Sum_probs=55.0

Q ss_pred             CcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc---------------------------------
Q 013976          298 KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH---------------------------------  344 (432)
Q Consensus       298 ~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~---------------------------------  344 (432)
                      +.+|+.|..+.|++|+.+.+.++++....    ++.+..++..-...                                 
T Consensus        37 ~~tv~vF~D~~CP~C~~~~~~l~~l~~~~----~v~v~~~~~~~~~~~s~~~a~a~~~a~~~~~~~~~~~~~~~~~~~~~  112 (169)
T d1v58a1          37 PVIVYVFADPFCPYCKQFWQQARPWVDSG----KVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLKLNV  112 (169)
T ss_dssp             SEEEEEEECTTCHHHHHHHHHHHHHHHTT----SEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCCCCC
T ss_pred             CEEEEEEECCCCcchHHHHHHHHHHHhcc----ceeEEEEecccCCcchHHHHHHHHhhhCHHHHHHHHHHhhhcccccc
Confidence            45789999999999999999888876433    46666666542110                                 


Q ss_pred             -------------------ccCCCCCCceEEEEeCCCcccCceeccCCCCHHHHHHHH
Q 013976          345 -------------------HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFL  383 (432)
Q Consensus       345 -------------------~~~~i~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi  383 (432)
                                         ..++++++|++++...+...   ....|..+.+.|.+.|
T Consensus       113 ~~~~~~~~~~~i~~n~~~a~~~gi~gTPt~i~~~~~g~~---~~~~G~~~~~~l~~il  167 (169)
T d1v58a1         113 PANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTL---QQAVGLPDQKTLNIIM  167 (169)
T ss_dssp             CSSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEE---EEEESSCCHHHHHHHT
T ss_pred             cchhhHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCE---EEecCCCCHHHHHHHh
Confidence                               01289999998887654433   2678888887776644

>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.77  E-value=0.0077  Score=46.75  Aligned_cols=90  Identities=7%  Similarity=0.054  Sum_probs=58.6

Q ss_pred             CCCcEEEEEeCCCCh-hhhhhHHHHHHHHHHhcCC---CCEEEEEEeCCCccc---------------------------
Q 013976          296 ESKDVLLEIYAPWCG-HCQAFEPTYNKLAKHLRGV---DSIVIAKMDGTTNEH---------------------------  344 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~-~c~~~~~~~~~la~~~~~~---~~~~~~~id~~~~~~---------------------------  344 (432)
                      .++.+||.|+.+||. .|....+.+.++...+...   ..+.+..+..+....                           
T Consensus        19 ~GK~vll~F~~t~C~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (160)
T d1wp0a1          19 LGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVD   98 (160)
T ss_dssp             TTSEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHCTTSCCEEEEEEESCTTTCCHHHHHHHHHTTCTTCEEEECCHHHHH
T ss_pred             CCCEEEEEEECCCCccccccchHHHHHHHHHhhcccccccccccccccCCCcccHHHHHHHHhhcCCCcccccCchHHhh
Confidence            478999999999996 7988888888888776542   245555555432111                           


Q ss_pred             ---ccCC---------------CCCCceEEEE-eCCCcccCceeccCCCCHHHHHHHHHhcCC
Q 013976          345 ---HRAK---------------SDGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNAS  388 (432)
Q Consensus       345 ---~~~~---------------i~~~P~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  388 (432)
                         ..+.               +...++++++ ++|+.+.   .|.+..+.+.|.+-|.+.+.
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~LId~~G~i~~---~~~~~~~~~~i~~~I~~~lk  158 (160)
T d1wp0a1          99 QVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLD---YFGQNKRKGEIAASIATHMR  158 (160)
T ss_dssp             HHHHHTTCCEEECCCCGGGCCCEEECCEEEEECTTSCEEE---EEETTCCHHHHHHHHHHHHT
T ss_pred             HHhhhhheeeecccCCCCCCceEeccceEEEECCCCcEEE---EECCCCCHHHHHHHHHHHHh
Confidence               0011               1223677777 6666553   56667788888888877654

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=95.61  E-value=0.021  Score=45.12  Aligned_cols=94  Identities=12%  Similarity=0.101  Sum_probs=59.7

Q ss_pred             CCCcceEEEEEeC-cchhhhHHHHHHHHHhccC-ceEEEEEecC--CcccccchhhhhCCCCC-----------------
Q 013976          167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMD--NEDVGKPVSEYFGITGE-----------------  225 (432)
Q Consensus       167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~-~i~f~~vd~~--~~~~~~~l~~~~~i~~~-----------------  225 (432)
                      .++++++.|+++| +.|....+.+.++...+.+ .+.++.+..+  ..+....+++.+++...                 
T Consensus        55 kGK~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  134 (176)
T d1jfua_          55 RGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAI  134 (176)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHHHHTT
T ss_pred             CCCEEEEEeccCcccchHHHHHhhhhccccccccccccccccccccchhhhhhhHhhhCCcceeeeecchhHHHHHHhhh
Confidence            4567788888999 8899999999999998875 3444444332  22212223333333221                 


Q ss_pred             ----CCcEEEEEeCCCCceecCCCC--CCHHHHHHHHHHHh
Q 013976          226 ----APKVLAYTGNDDAKKHILDGE--LTLDKIKTFGEDFL  260 (432)
Q Consensus       226 ----~~P~i~i~~~~~~~~y~~~~~--~~~~~i~~fi~~~~  260 (432)
                          ..|+.++++.++...+.+.|.  .+.+++.++|+..+
T Consensus       135 ~~v~~~P~~~lID~~G~I~~~~~G~~~~~~~e~~~~l~al~  175 (176)
T d1jfua_         135 GRALGMPTSVLVDPQGCEIATIAGPAEWASEDALKLIRAAT  175 (176)
T ss_dssp             TCCSSSSEEEEECTTSBEEEEEESCCCTTSHHHHHHHHHHH
T ss_pred             ccCCCCCeEEEEcCCCEEEEEEECCCCCChHHHHHHHHHhc
Confidence                138888887765444555563  45678888887754

>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Amphibacillus xylanus [TaxId: 1449]

Probab=95.35  E-value=0.009  Score=46.95  Aligned_cols=44  Identities=14%  Similarity=0.169  Sum_probs=37.0

Q ss_pred             CCcEEEEEeCC-CChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCC
Q 013976          297 SKDVLLEIYAP-WCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT  341 (432)
Q Consensus       297 ~~~~lv~f~~~-~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~  341 (432)
                      ++.+||+||.. ||+.|....+.|.++...|.+. ++.+.-|.++.
T Consensus        31 GK~vvl~F~p~~~~p~C~~e~~~~~~~~~~f~~~-g~~vv~IS~D~   75 (166)
T d1we0a1          31 GKWSIVVFYPADFSFVCPTELEDVQKEYAELKKL-GVEVYSVSTDT   75 (166)
T ss_dssp             SSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHT-TEEEEEEESSC
T ss_pred             CCeEEEEEecccCCcHHHHHHHHHHHHHHhhccc-ceEEEeccccc
Confidence            56788889865 9999999999999999999864 67777788764

>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin dot5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.32  E-value=0.011  Score=45.86  Aligned_cols=44  Identities=7%  Similarity=0.122  Sum_probs=33.4

Q ss_pred             CCCcEEEEEe-CCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCC
Q 013976          296 ESKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT  341 (432)
Q Consensus       296 ~~~~~lv~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~  341 (432)
                      +++.++++|| +.||+.|....+.|.+....|+.  ...++-|+.+.
T Consensus        32 k~~~vvlff~p~~~cp~C~~~~~~~~~~~~~~~~--~~~~~~is~d~   76 (156)
T d2a4va1          32 NNRVVVFFVYPRASTPGSTRQASGFRDNYQELKE--YAAVFGLSADS   76 (156)
T ss_dssp             HCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTT--TCEEEEEESCC
T ss_pred             CccEEEEEecccccCcchhhhhHHHHHHHHHHhh--ccceeeeccch
Confidence            3455666666 78999999999999999999976  45556666553

>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.02  E-value=0.0036  Score=45.10  Aligned_cols=57  Identities=11%  Similarity=0.293  Sum_probs=38.7

Q ss_pred             EEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--c-----cCCCCCCceEEEEeCCC
Q 013976          301 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--H-----RAKSDGFPTILFFPAGN  362 (432)
Q Consensus       301 lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~-----~~~i~~~P~i~~~~~g~  362 (432)
                      +|+|..+||++|......|.++.-.+   ..+.+..+|......  .     ..+..++|.|.+  +|+
T Consensus        14 Vviysk~~Cp~C~~ak~ll~~~~~~~---~~~~~~e~d~~~d~~~~~~~l~~~~g~~tvPqIfi--~g~   77 (105)
T d1ktea_          14 VVVFIKPTCPFCRKTQELLSQLPFKE---GLLEFVDITATSDTNEIQDYLQQLTGARTVPRVFI--GKE   77 (105)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHSCBCT---TSEEEEEGGGSTTHHHHHHHHHHHHSCCCSCEEEE--TTE
T ss_pred             EEEEECCCCchHHHHHHHHHHhCCcc---ceeeeeecccccccHHHHHHHhhccCCCcCcEEEE--CCE
Confidence            77899999999999988777653322   246777777665433  1     126678998744  554

>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Escherichia coli [TaxId: 562]

Probab=94.87  E-value=0.014  Score=45.74  Aligned_cols=42  Identities=24%  Similarity=0.381  Sum_probs=32.6

Q ss_pred             CCcEEEEEe-CCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCC
Q 013976          297 SKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT  341 (432)
Q Consensus       297 ~~~~lv~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~  341 (432)
                      ++.+|+.|| +.||+.|....+.|.+++..+.   ++.++.|..+.
T Consensus        44 GK~vvl~f~~~~~~p~C~~~~~~l~~~~~~~~---~~~vv~Is~d~   86 (164)
T d1qxha_          44 GKRKVLNIFPSIDTGVCAASVRKFNQLATEID---NTVVLCISADL   86 (164)
T ss_dssp             TSEEEEEECSCSCSSCCCHHHHHHHHHHHTST---TEEEEEEESSC
T ss_pred             CCeEEEEEecchhcccchHHHHHHHHHHHhhc---cceeeeEEcCC
Confidence            567777777 7799999999999998877664   47777777654

>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Putative peroxiredoxin Rv2238c/MT2298
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.84  E-value=0.013  Score=45.16  Aligned_cols=44  Identities=16%  Similarity=0.156  Sum_probs=33.4

Q ss_pred             CCcEEEE-EeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCC
Q 013976          297 SKDVLLE-IYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT  341 (432)
Q Consensus       297 ~~~~lv~-f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~  341 (432)
                      ++.++++ |++.||+.|....+.+.++...+... ++.+..++.+.
T Consensus        29 ~~~vvl~~~~~~~cp~C~~e~~~l~~~~~~~~~~-~~~vi~vs~d~   73 (153)
T d1xvwa1          29 AKNVLLVFFPLAFTGICQGELDQLRDHLPEFEND-DSAALAISVGP   73 (153)
T ss_dssp             TCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSS-SEEEEEEESCC
T ss_pred             CCcEEEEecccccccchhhhhhhhhhhhhhhccc-ccccccccchh
Confidence            3455554 45899999998888888888888763 78888887765

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.34  E-value=0.018  Score=45.12  Aligned_cols=78  Identities=6%  Similarity=-0.087  Sum_probs=53.3

Q ss_pred             cCCCchhhhcc-CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCC-CCCcEEEE
Q 013976          156 FTRENAPSVFE-SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITG-EAPKVLAY  232 (432)
Q Consensus       156 l~~~~~~~~~~-~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~-~~~P~i~i  232 (432)
                      ++.+....+-. .++..++.|+++| ++|+...|.+.+++..+.+ +.|..++.+.   +++.+..|.... ...|.+++
T Consensus        41 l~~~~~~~l~~~~~~~~~l~~~~tWC~~C~~~~P~l~~l~~~~~~-~~~~~i~~d~---~~~~~~~~~~~~~~~~p~~~~  116 (166)
T d1z6na1          41 LPSALTERLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQPN-IELAIISKGR---AEDDLRQRLALERIAIPLVLV  116 (166)
T ss_dssp             CCHHHHHHHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCTT-EEEEEECHHH---HHHHTTTTTTCSSCCSSEEEE
T ss_pred             ccHHHHHHHHHhcCCeEEEEEEeCcCccHHHHHHHHHHHHHHCCC-CcEEEEECcc---CHHHHHHHHHhccccccceee
Confidence            33444444333 3334577788999 9999999999999999875 7888888776   456677775532 34577767


Q ss_pred             EeCCC
Q 013976          233 TGNDD  237 (432)
Q Consensus       233 ~~~~~  237 (432)
                      .+...
T Consensus       117 ~d~~~  121 (166)
T d1z6na1         117 LDEEF  121 (166)
T ss_dssp             ECTTC
T ss_pred             cCccc
Confidence            65543

>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=94.18  E-value=0.029  Score=45.13  Aligned_cols=41  Identities=22%  Similarity=0.450  Sum_probs=29.7

Q ss_pred             CCcEEEEEeCCCChhhhhhHHHHHHHHH---HhcCCCCEEEEEEeC
Q 013976          297 SKDVLLEIYAPWCGHCQAFEPTYNKLAK---HLRGVDSIVIAKMDG  339 (432)
Q Consensus       297 ~~~~lv~f~~~~c~~c~~~~~~~~~la~---~~~~~~~~~~~~id~  339 (432)
                      +++.++.|++-+|++|..+.|.+..+..   .+.+  ++.|....+
T Consensus       113 ~~~~VvEffsy~Cp~C~~~e~~l~~~~~~~~~~~~--~v~~~~~~~  156 (195)
T d1un2a_         113 GAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPE--GVKMTKYHV  156 (195)
T ss_dssp             TCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCT--TCCEEEEEC
T ss_pred             CCceEEEEEecCCccccccchhhhHHHHHHhhcCC--CcEEEEEec
Confidence            4677999999999999999998765444   4444  456655543

>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Bacillus subtilis [TaxId: 1423]

Probab=94.10  E-value=0.029  Score=44.12  Aligned_cols=45  Identities=16%  Similarity=0.243  Sum_probs=36.2

Q ss_pred             CCCcEEEEEeCCCCh-hhhhhHHHHHHHHHHhcCC-CCEEEEEEeCC
Q 013976          296 ESKDVLLEIYAPWCG-HCQAFEPTYNKLAKHLRGV-DSIVIAKMDGT  340 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~-~c~~~~~~~~~la~~~~~~-~~~~~~~id~~  340 (432)
                      .++.+||.|+.+||. .|....+.+.++...+... .++.++.|.++
T Consensus        30 ~Gk~vvl~F~~t~Cp~~C~~~~~~l~~~~~~~~~~~~~v~~v~isiD   76 (172)
T d1xzoa1          30 KGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVD   76 (172)
T ss_dssp             TTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESC
T ss_pred             CCCEEEEEEecccccccccccchhhhhhhhhhccccccccccccccc
Confidence            368999999999996 7999999999998888532 35777777665

>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=93.90  E-value=0.039  Score=44.27  Aligned_cols=87  Identities=13%  Similarity=0.167  Sum_probs=61.2

Q ss_pred             CCcEEEEEe-CCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc------------------------------c
Q 013976          297 SKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------------------------------H  345 (432)
Q Consensus       297 ~~~~lv~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~------------------------------~  345 (432)
                      ++.+|++|| +.||..|..-...|.++...++.. ++.+..|..+....                              .
T Consensus        33 GK~vVL~FyP~~~t~~C~~E~~~f~~~~~~f~~~-g~~VlgIS~Ds~~s~~~~~~~~~~~~~~~~l~fpllsD~~~~v~~  111 (194)
T d1uula_          33 GKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDI-GCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMK  111 (194)
T ss_dssp             TSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTT-TEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTCHHHH
T ss_pred             CCeEEEEEEeCCccccchhhhhHHHhhhhhhccC-ceEEEEEecCchhhhhhhhhhhhhhccccCCCcceeeCCcchHHH
Confidence            578899999 899999999999999999999874 78888888764210                              1


Q ss_pred             cCCC------CCCceEEEEeCCCcccCceecc---CCCCHHHHHHHHHh
Q 013976          346 RAKS------DGFPTILFFPAGNKSFDPINVD---VDRTVVALYKFLKK  385 (432)
Q Consensus       346 ~~~i------~~~P~i~~~~~g~~~~~~~~y~---g~~~~~~l~~fi~~  385 (432)
                      .|++      ..+|+..+.-....+ +.+.+.   -.++.+++++.|+.
T Consensus       112 ~ygv~~~~~~~~~R~tfvID~~G~I-~~~~~~~~~~~r~~~E~Lr~l~a  159 (194)
T d1uula_         112 SYGVLKEEDGVAYRGLFIIDPKQNL-RQITVNDLPVGRDVDEALRLVKA  159 (194)
T ss_dssp             HHTCEETTTTEECEEEEEECTTSBE-EEEEEECTTBCCCHHHHHHHHHH
T ss_pred             HcCCeeccCCceEEEEEEECCCCeE-EEEEEecCCCCcCHHHHHHHHHH
Confidence            1233      346777777444444 333222   26789999988865

>d1a8ya3 c.47.1.3 (A:229-347) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=93.60  E-value=0.35  Score=33.76  Aligned_cols=104  Identities=12%  Similarity=0.048  Sum_probs=74.3

Q ss_pred             eEEEecccchhhhhcC-CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc------ccCCCC-CC
Q 013976          281 VKIVVGNNFDEIVLDE-SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------HRAKSD-GF  352 (432)
Q Consensus       281 v~~l~~~~~~~~~~~~-~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~------~~~~i~-~~  352 (432)
                      +++|...+..+...++ ++..+|-|.-.....-.+|..+++++|+.+.+++++.|+.||-+.-+.      ..|+|. .-
T Consensus         2 lrKl~~e~m~e~W~dd~~g~~IvAFaee~d~dG~eFl~ilk~vA~~nt~n~~LsivWIDPD~FPlm~~yWe~tF~IDl~~   81 (119)
T d1a8ya3           2 LRKLKPESMYETWEDDMDGIHIVAFAEEADPDGYEFLEILKSVAQDNTDNPDLSIIWIDPDDFPLLVPYWEKTFDIDLSA   81 (119)
T ss_dssp             EEECCTTTHHHHHTCCBTTEEEEEECCTTSHHHHHHHHHHHHHHHHSTTCSSCCEEEECGGGCTTTHHHHHHHHTCCTTS
T ss_pred             ccccchHHHHHHHhcccCCceEEEEecCCCccHHHHHHHHHHHHHHcCcCCCceEEEECCcccchHHHHHHHhcCCCCCC
Confidence            4556667777766444 356777776676777799999999999999999999999999888776      234554 23


Q ss_pred             ceEEEEeCCCcccCceecc-----CCCCHHHHHHHHHhc
Q 013976          353 PTILFFPAGNKSFDPINVD-----VDRTVVALYKFLKKN  386 (432)
Q Consensus       353 P~i~~~~~g~~~~~~~~y~-----g~~~~~~l~~fi~~~  386 (432)
                      |.|-+..-...  ..+=|.     ...+++.|.+||++.
T Consensus        82 PqIGVVdv~da--dSvW~~~~~~~d~~t~~~Le~WiedV  118 (119)
T d1a8ya3          82 PQIGVVNVTDA--DSVWMEMDDEEDLPSAEELEDWLEDV  118 (119)
T ss_dssp             CEEEEEETTTC--CEEECC-------CCHHHHHHHHHHH
T ss_pred             CceeeEecccC--cceeeecccccccccHHHHHHHHHHh
Confidence            99988855443  122222     134889999999875

>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin-3 (AOP-1, SP-22)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.59  E-value=0.043  Score=42.45  Aligned_cols=44  Identities=14%  Similarity=0.191  Sum_probs=36.2

Q ss_pred             CCcEEEEEe-CCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCC
Q 013976          297 SKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT  341 (432)
Q Consensus       297 ~~~~lv~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~  341 (432)
                      ++.++++|| +.||+.|....+.+.++...+... +..+.-|..+.
T Consensus        26 Gk~vVL~Fyp~~~tp~C~~e~~~~~~~~~~~~~~-~~~vigIS~d~   70 (158)
T d1zyea1          26 GKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDV-NCEVVAVSVDS   70 (158)
T ss_dssp             TSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHT-TEEEEEEESSC
T ss_pred             CCeEEEEEeehhcCCccccchhhHHHhHHHhhcC-CceEEeccCcC
Confidence            578999999 899999999999999999988764 56666676653

>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin reductase TsaA
species: Helicobacter pylori [TaxId: 210]

Probab=93.36  E-value=0.035  Score=43.60  Aligned_cols=44  Identities=11%  Similarity=0.169  Sum_probs=36.3

Q ss_pred             CCcEEEEEe-CCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCC
Q 013976          297 SKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT  341 (432)
Q Consensus       297 ~~~~lv~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~  341 (432)
                      +++++++|| +.||+.|....+.|+++...+... ++.+..|..+.
T Consensus        33 k~~vvl~FyP~~~tp~C~~e~~~~~~~~~~f~~~-g~~Vvgis~d~   77 (170)
T d1zofa1          33 KNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEK-GFNVIGVSIDS   77 (170)
T ss_dssp             SSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHT-TEEEEEEESSC
T ss_pred             CCEEEEEEEccccCCcCHHHHHHHHHhHHhhccC-CeeEecccccc
Confidence            457888888 899999999999999999998764 67777777654

>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.89  E-value=0.079  Score=42.06  Aligned_cols=87  Identities=9%  Similarity=0.045  Sum_probs=58.8

Q ss_pred             CCcEEEEEe-CCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc---------------------------ccCC
Q 013976          297 SKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH---------------------------HRAK  348 (432)
Q Consensus       297 ~~~~lv~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~---------------------------~~~~  348 (432)
                      ++.++++|| +.||..|....+.|++....|... ++.+.-|.++.-..                           ..|+
T Consensus        30 Gk~vVL~FyP~~~tp~C~~e~~~f~~~~~~f~~~-~~~v~gIS~Ds~~sh~~f~~~~~~~~~~~fpllsD~~~~v~~~yG  108 (186)
T d1n8ja_          30 GRWSVFFFYPADFTFVSPTELGDVADHYEELQKL-GVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD  108 (186)
T ss_dssp             TSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHT-TEEEEEEESSCHHHHHHHHHHCTTGGGCCSEEEECTTSHHHHHTT
T ss_pred             CCeEEEEEEeccCCCccHHHHHHHHHhhhhcccc-cEEEEeccccCHHHHHHHhccccccccccccccccHHHHHHHHhC
Confidence            578889999 788999999999999999999864 67777777665221                           1233


Q ss_pred             CC------CCceEEEEeCCCcccCcee-cc--CCCCHHHHHHHHHh
Q 013976          349 SD------GFPTILFFPAGNKSFDPIN-VD--VDRTVVALYKFLKK  385 (432)
Q Consensus       349 i~------~~P~i~~~~~g~~~~~~~~-y~--g~~~~~~l~~fi~~  385 (432)
                      +.      ..|+.++.-....+ +.+. +.  -.++++++++.|+.
T Consensus       109 v~~~~~g~~~r~tfiID~~G~I-r~~~v~~~~~~r~~~eiL~~lka  153 (186)
T d1n8ja_         109 NMREDEGLADRATFVVDPQGII-QAIEVTAEGIGRDASDLLRKIKA  153 (186)
T ss_dssp             CEETTTTEECEEEEEECTTSBE-EEEEEECTTBCCCHHHHHHHHHH
T ss_pred             CCcccCCcceeeEEEECchheE-EEEeecCCCcccCHHHHHHHHHH
Confidence            32      35677777443344 2222 22  26788998888884

>d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol peroxidase PsaD
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=92.55  E-value=0.057  Score=41.93  Aligned_cols=43  Identities=16%  Similarity=0.233  Sum_probs=30.5

Q ss_pred             CCCcEEEEEe-CCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCC
Q 013976          296 ESKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT  341 (432)
Q Consensus       296 ~~~~~lv~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~  341 (432)
                      .++.++|.|| +.||+.|....+.+.+....++   ++.++.|..+.
T Consensus        41 ~gk~~vl~f~~~~~~p~C~~~~~~l~~~~~~~~---~~~vv~Is~d~   84 (163)
T d1psqa_          41 DGKKKVLSVVPSIDTGICSTQTRRFNEELAGLD---NTVVLTVSMDL   84 (163)
T ss_dssp             TTSEEEEEECSCTTSHHHHHHHHHHHHHTTTCT---TEEEEEEESSC
T ss_pred             CCcEEEEEeccccccccchhhHHHHHHHHHhhc---ccceEEEEecc
Confidence            3567777777 7799999998777776655554   46677676553

>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Plasmodium yoelii [TaxId: 5861]

Probab=92.28  E-value=0.076  Score=41.53  Aligned_cols=44  Identities=16%  Similarity=0.164  Sum_probs=37.2

Q ss_pred             CCcEEEEEe-CCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCC
Q 013976          297 SKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT  341 (432)
Q Consensus       297 ~~~~lv~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~  341 (432)
                      ++++||+|| +.||..|......|.+....|.+. ++.++.|+++.
T Consensus        27 ~k~vVl~FyP~~~tp~Ct~e~~~f~~~~~~f~~~-g~~vigIS~D~   71 (170)
T d2h01a1          27 KKYVLLYFYPLDFTFVCPSEIIALDKALDSFKER-NVELLGCSVDS   71 (170)
T ss_dssp             TCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHT-TEEEEEEESSC
T ss_pred             CCeEEEEEECCCCCCccchhhHHHhhhhhhhhcC-CeeEecccCCc
Confidence            478888888 899999999999999999999864 78888888773

>d1hyua3 c.47.1.2 (A:1-102) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=91.81  E-value=0.73  Score=32.06  Aligned_cols=82  Identities=9%  Similarity=0.011  Sum_probs=54.5

Q ss_pred             hhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCcccccCCCCCCceEEEEeCCCcccCceec
Q 013976          291 EIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINV  370 (432)
Q Consensus       291 ~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~~~~~i~~~P~i~~~~~g~~~~~~~~y  370 (432)
                      +++.+-.++|.+..+...|..|.++...++++|..= +  ++.+..-+        ......|++.+.++|..  .-++|
T Consensus        12 ~~f~~l~~~V~l~~~~~~~~~s~el~~~l~eva~lS-d--kI~~~~~~--------~~~~r~Ps~~i~~~g~~--~gI~F   78 (102)
T d1hyua3          12 AYLEKLTKPVELIATLDDSAKSAEIKELLAEIAELS-D--KVTFKEDN--------TLPVRKPSFLITNPGSQ--QGPRF   78 (102)
T ss_dssp             HHHTTCCSCEEEEEECCSSHHHHHHHHHHHHHHTTC-T--TEEEEECT--------TSSSCSSEEEEECTTCC--CSCEE
T ss_pred             HHHHhCCCCEEEEEEeCCChhHHHHHHHHHHHHhhC-C--CeEEEEcC--------CCCCCCCeEEEecCCCE--eeeEE
Confidence            333333578888888889999999988888887643 2  56665322        12245799999887765  35789


Q ss_pred             cCCCCHHHHHHHHHh
Q 013976          371 DVDRTVVALYKFLKK  385 (432)
Q Consensus       371 ~g~~~~~~l~~fi~~  385 (432)
                      .|-..-.++.+||..
T Consensus        79 ~GiP~GhEF~Slila   93 (102)
T d1hyua3          79 AGSPLGHEFTSLVLA   93 (102)
T ss_dssp             ESCCCGGGHHHHHHH
T ss_pred             ecCCCcccHHHHHHH
Confidence            986555555555443

>d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.67  E-value=0.07  Score=41.54  Aligned_cols=31  Identities=26%  Similarity=0.325  Sum_probs=22.9

Q ss_pred             CCCcEEEEEe-CCCChhhhhhHHHHHHHHHHh
Q 013976          296 ESKDVLLEIY-APWCGHCQAFEPTYNKLAKHL  326 (432)
Q Consensus       296 ~~~~~lv~f~-~~~c~~c~~~~~~~~~la~~~  326 (432)
                      .++.+|+.|| +.||+.|....+.|.+....+
T Consensus        42 ~Gk~vvl~f~~~~~~p~C~~e~~~l~~~~~~~   73 (166)
T d1xvqa_          42 RGKSVLLNIFPSVDTPVCATSVRTFDERAAAS   73 (166)
T ss_dssp             TTSCEEEEECSCCCSSCCCHHHHHHHHHHHHT
T ss_pred             CCcEEEEEeeecccccccHHHHHHHhhhcccc
Confidence            3567888888 557778988888777766554

>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Haemophilus influenzae [TaxId: 727]

Probab=90.88  E-value=0.16  Score=39.34  Aligned_cols=42  Identities=21%  Similarity=0.338  Sum_probs=32.2

Q ss_pred             CCcEEEEEe-CCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCC
Q 013976          297 SKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT  341 (432)
Q Consensus       297 ~~~~lv~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~  341 (432)
                      ++.+++.|| +.||..|....+.|.+....+++   +.++-|.++.
T Consensus        42 Gk~vVL~f~p~~~tp~C~~e~~~~~~~~~~~~~---~~vi~iS~d~   84 (164)
T d1q98a_          42 SKRKVLNIFPSIDTGVCATSVRKFNQQAAKLSN---TIVLCISADL   84 (164)
T ss_dssp             TSEEEEEECSCSCSSCCCHHHHHHHHHHHHSTT---EEEEEEESSC
T ss_pred             CcEEEEEecCccccCcccHHHHHHHHHHHHhcc---ceEEeecCCc
Confidence            467888888 55777899888999998888864   6677776654

>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.42  E-value=0.38  Score=36.53  Aligned_cols=31  Identities=13%  Similarity=0.052  Sum_probs=20.7

Q ss_pred             CCCcEEEEEeCCCChh-hhhhHHHHHHHHHHh
Q 013976          296 ESKDVLLEIYAPWCGH-CQAFEPTYNKLAKHL  326 (432)
Q Consensus       296 ~~~~~lv~f~~~~c~~-c~~~~~~~~~la~~~  326 (432)
                      .++.+||.|+.+||.. |..+...+..+...+
T Consensus        25 ~GK~vli~f~~t~c~~~c~~~~~~~~~~~~~~   56 (169)
T d2b7ka1          25 LGKFSIIYFGFSNCPDICPDELDKLGLWLNTL   56 (169)
T ss_dssp             TTSCEEEEEECTTCCSHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEEeccccCCcccchhhhhhhhhhhc
Confidence            4688999999998864 555555555554444

>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.55  E-value=0.25  Score=39.46  Aligned_cols=44  Identities=16%  Similarity=0.204  Sum_probs=37.5

Q ss_pred             CCcEEEEEe-CCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCC
Q 013976          297 SKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT  341 (432)
Q Consensus       297 ~~~~lv~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~  341 (432)
                      ++.++++|| +.||..|..-...|.++...|... ++.+.-|.++.
T Consensus        34 Gk~~vL~FyP~~~tp~C~~e~~~~~~~~~~f~~~-g~~vigIS~D~   78 (197)
T d1qmva_          34 GKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKL-GCEVLGVSVDS   78 (197)
T ss_dssp             TSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTT-TEEEEEEESSC
T ss_pred             CCeEEEEEecccccccchhhhHHHHHHHHHhccC-CcEEEEEecCC
Confidence            577888888 899999999999999999999875 78888888764

>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.18  E-value=0.14  Score=36.51  Aligned_cols=46  Identities=15%  Similarity=0.307  Sum_probs=32.0

Q ss_pred             CCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--c----cCCCCCCceEEEEeCCC
Q 013976          307 PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--H----RAKSDGFPTILFFPAGN  362 (432)
Q Consensus       307 ~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~----~~~i~~~P~i~~~~~g~  362 (432)
                      |.|+.|..+...|..+        ++.+..+|++....  .    .-+..++|.|.+  +|+
T Consensus        28 p~Cp~c~~ak~lL~~~--------~i~~~~~~v~~~~~~~~~l~~~t~~~TvPqIFi--~g~   79 (109)
T d1wika_          28 AKCGFSKQILEILNST--------GVEYETFDILEDEEVRQGLKTFSNWPTYPQLYV--RGD   79 (109)
T ss_dssp             CCSSTHHHHHHHHHHT--------CSCEEEEESSSCHHHHHHHHHHHSCCSSCEEEC--SSS
T ss_pred             CCChHHHHHHHHHHhc--------CCCceEEEecccHHHHHHHHHhcCCCCCCeEEE--CCE
Confidence            7899999988777654        46777788776654  1    235667888664  554

>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.34  E-value=0.69  Score=35.55  Aligned_cols=92  Identities=12%  Similarity=0.159  Sum_probs=57.4

Q ss_pred             CCcceEEEE-EeC-cchhhhHHHHHHHHHhccCc-eEEEEEecCCcc----------------------cccchhhhhCC
Q 013976          168 PIKNQLLLF-AVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNED----------------------VGKPVSEYFGI  222 (432)
Q Consensus       168 ~~~~~i~~~-~~~-~~~~~~~~~~~~~a~~~~~~-i~f~~vd~~~~~----------------------~~~~l~~~~~i  222 (432)
                      |+..++.|| ..| +.|......+.+...+|+.. +.++.+..+...                      ....+++.||+
T Consensus        44 GK~vvl~f~p~~~~p~C~~~~~~~~~~~~~~~~~g~~vv~is~d~~~~~~~~~~~~~~~~~~~f~ll~D~~~~v~~~ygv  123 (169)
T d2bmxa1          44 GKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAGV  123 (169)
T ss_dssp             TCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHTC
T ss_pred             CCeEEEEEecCCCCccccccccccccccccccccCcceeeccccchhhhhhhcccccccccceEEEEeccHHHHHHHcCC
Confidence            444444454 566 88999999999999999863 566666444210                      13456788887


Q ss_pred             C---CCCCcEEEEEeCCCCceecC----CCCCCHHHHHHHHHHH
Q 013976          223 T---GEAPKVLAYTGNDDAKKHIL----DGELTLDKIKTFGEDF  259 (432)
Q Consensus       223 ~---~~~~P~i~i~~~~~~~~y~~----~~~~~~~~i~~fi~~~  259 (432)
                      -   +...|+.++++.++...|..    .-..+.+++.+.|+.+
T Consensus       124 ~~~~~~~~r~~fvID~~G~I~~~~~~~~~~~~~~~evl~~l~al  167 (169)
T d2bmxa1         124 LNADGVADRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLDAL  167 (169)
T ss_dssp             BCTTSSBCEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred             CccCCccceeEEEEcCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence            3   23457777777655443332    1235677787777653

>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.55  E-value=0.55  Score=38.01  Aligned_cols=44  Identities=11%  Similarity=0.002  Sum_probs=35.8

Q ss_pred             CCCcEEEEEe-CCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCC
Q 013976          296 ESKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT  340 (432)
Q Consensus       296 ~~~~~lv~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~  340 (432)
                      .++.+|++|| +.||..|..-...|.+....+... ++.+.-|.++
T Consensus        26 g~k~vVLfFyP~dftpvC~~El~~~~~~~~~f~~~-g~~v~giS~D   70 (220)
T d1prxa_          26 GDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKR-NVKLIALSID   70 (220)
T ss_dssp             TTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTT-TEEEEEEESS
T ss_pred             CCCeEEEEEECCCCCCcchhhHHHHHHHHHHhhcc-cceeeccccc
Confidence            3577888888 689999999999999999999875 6777777665

>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Bacterioferritin comigratory protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=87.39  E-value=0.65  Score=35.19  Aligned_cols=98  Identities=13%  Similarity=0.119  Sum_probs=57.8

Q ss_pred             hhccCCCcceEEEE-EeC-cchhhhHHHHHHHHHhccCc-eEEEEEecCCcc------------------cccchhhhhC
Q 013976          163 SVFESPIKNQLLLF-AVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNED------------------VGKPVSEYFG  221 (432)
Q Consensus       163 ~~~~~~~~~~i~~~-~~~-~~~~~~~~~~~~~a~~~~~~-i~f~~vd~~~~~------------------~~~~l~~~~~  221 (432)
                      .+...++++++.|| ..| +.|....+.+.+++.++.+. +.++.+..+...                  ....+.+.||
T Consensus        25 d~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g  104 (160)
T d2cx4a1          25 EVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDSPWCLKKFKDENRLAFNLLSDYNREVIKLYN  104 (160)
T ss_dssp             HHHTTSSCEEEEECSCTTCHHHHHHHHHHHHTCTTTSTTCCEEEEEESSCHHHHHHHHHHHTCSSEEEECTTSHHHHHTT
T ss_pred             HHhhCCCEEEEEecccccCCchhhhhhhhhcccccccccccccccccccchhhhhhhcccceeeEEEeecCCcchHHHcC
Confidence            33445656666666 567 88999888888888888753 445555333211                  1245566777


Q ss_pred             CCC--------CCCcEEEEEeCCCCceecC-----CCCCCHHHHHHHHHHHh
Q 013976          222 ITG--------EAPKVLAYTGNDDAKKHIL-----DGELTLDKIKTFGEDFL  260 (432)
Q Consensus       222 i~~--------~~~P~i~i~~~~~~~~y~~-----~~~~~~~~i~~fi~~~~  260 (432)
                      +..        ...|+.++++.++...|.+     .+..+.+.+.+-++.+.
T Consensus       105 v~~~~~~~~~~~~~~~~flId~~G~I~~~~~~~~~~~~~~~~eil~~l~~l~  156 (160)
T d2cx4a1         105 VYHEDLKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDYDEVVREANKIA  156 (160)
T ss_dssp             CEEEEETTEEEEECCEEEEECTTSBEEEEEECSSTTCCCCHHHHHHHHHHHH
T ss_pred             ccccccccccccceeeEEEEcCCCEEEEEEEeCCCCCCCCHHHHHHHHHHHc
Confidence            632        1236666776665444432     12346677777776654

>d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH985, a thioredoxin
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=84.30  E-value=1.5  Score=28.53  Aligned_cols=69  Identities=17%  Similarity=0.148  Sum_probs=49.7

Q ss_pred             EEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCceecCCCC-CCHHHH
Q 013976          175 LFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGE-LTLDKI  252 (432)
Q Consensus       175 ~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~-~~~~~i  252 (432)
                      ++.+. ..|.+.....++++.+..-...+..+  .+   .+++. .||+-..  |+++|.     ....+.|. .+.++|
T Consensus         6 Vlg~gC~~C~~~~~~v~~a~~e~gi~a~v~kv--~d---~~ei~-~ygVmst--PalvId-----g~vv~~G~vPs~~ei   72 (77)
T d1iloa_           6 IYGTGCANCQMLEKNAREAVKELGIDAEFEKI--KE---MDQIL-EAGLTAL--PGLAVD-----GELKIMGRVASKEEI   72 (77)
T ss_dssp             EECSSSSTTHHHHHHHHHHHHHTTCCEEEEEE--CS---HHHHH-HHTCSSS--SCEEET-----TEEEECSSCCCHHHH
T ss_pred             EeCCCCccHHHHHHHHHHHHHHcCCceEEEEe--CC---HHHHH-HcCCcCC--CEEEEC-----CEEEEEecCCCHHHH
Confidence            45556 78999999999999987655555544  33   44665 5999888  999774     13355675 499999


Q ss_pred             HHHH
Q 013976          253 KTFG  256 (432)
Q Consensus       253 ~~fi  256 (432)
                      .+|+
T Consensus        73 ~~~L   76 (77)
T d1iloa_          73 KKIL   76 (77)
T ss_dssp             HHHC
T ss_pred             HHHh
Confidence            9886

>d1t1va_ c.47.1.14 (A:) SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: SH3BGR (SH3-binding, glutamic acid-rich protein-like)
domain: SH3BGRL3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.14  E-value=0.74  Score=31.39  Aligned_cols=36  Identities=11%  Similarity=0.032  Sum_probs=27.8

Q ss_pred             EEEEeCCCCh------hhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc
Q 013976          301 LLEIYAPWCG------HCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH  344 (432)
Q Consensus       301 lv~f~~~~c~------~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~  344 (432)
                      ++.|++++|+      .|..+...|+..        ++.+..+|++.+..
T Consensus         4 i~vy~ts~~~~~~~~~~~~r~~~lL~~~--------~I~y~~iDi~~d~~   45 (93)
T d1t1va_           4 LRVYSTSVTGSREIKSQQSEVTRILDGK--------RIQYQLVDISQDNA   45 (93)
T ss_dssp             EEEEECSSCSCHHHHHHHHHHHHHHHHT--------TCCCEEEETTSCHH
T ss_pred             EEEEEccCcCChhhHHHHHHHHHHHHHC--------CCceEEEEecCchh
Confidence            5678999996      787777666664        68888999987655

>d2b5ea2 c.47.1.2 (A:142-239) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.30  E-value=5.5  Score=26.34  Aligned_cols=84  Identities=10%  Similarity=0.159  Sum_probs=60.9

Q ss_pred             ccchhhhhcCC--CcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCcccccCCCCCCceEEEEeCCCcc
Q 013976          287 NNFDEIVLDES--KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKS  364 (432)
Q Consensus       287 ~~~~~~~~~~~--~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~~~~~i~~~P~i~~~~~g~~~  364 (432)
                      .+.+.++.+..  .+++|..--.    -+.+...|.++|..+.+  .+.|+..+..++         =|.+.+|-.|...
T Consensus         6 ~dl~~~l~n~t~v~pVVV~~Gv~----d~~fNeTF~~~A~~l~~--Dy~Fvs~~~~~~---------~~kLsV~LP~e~d   70 (98)
T d2b5ea2           6 ADLPAYLANETFVTPVIVQSGKI----DADFNATFYSMANKHFN--DYDFVSAENADD---------DFKLSIYLPSAMD   70 (98)
T ss_dssp             SCHHHHHHHSCCSSCEEEEEESC----CHHHHHHHHHHHHHTTT--TCEEEEEECTTS---------CCEEEEEETTEEE
T ss_pred             hhhHHHHhcCcccCCEEEeCCcc----ccchhHHHHHHHHHhhc--ceEEEeccCCCC---------CccEEEECCCCCC
Confidence            34666776666  5899987532    25677789999999998  799999885443         3677788666543


Q ss_pred             cCceeccCC----CCHHHHHHHHHhc
Q 013976          365 FDPINVDVD----RTVVALYKFLKKN  386 (432)
Q Consensus       365 ~~~~~y~g~----~~~~~l~~fi~~~  386 (432)
                       .|+.|.|.    .+.+.+.+||+=.
T Consensus        71 -EPIvf~G~~~~i~~a~~l~~WlkVe   95 (98)
T d2b5ea2          71 -EPVVYNGKKADIADADVFEKWLQVE   95 (98)
T ss_dssp             -EEEECCSCHHHHTSHHHHHHHHHHH
T ss_pred             -CCeEEcCccCCcccHHHHHHHHeee
Confidence             68999994    3567799999743

>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Crithidia fasciculata [TaxId: 5656]

Probab=81.21  E-value=1.8  Score=32.98  Aligned_cols=92  Identities=14%  Similarity=0.136  Sum_probs=56.7

Q ss_pred             CCCcceEEEE-EeC-cchhhhHHHHHHHHHhccC-ceEEEEEecCCcc-------------------------cccchhh
Q 013976          167 SPIKNQLLLF-AVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNED-------------------------VGKPVSE  218 (432)
Q Consensus       167 ~~~~~~i~~~-~~~-~~~~~~~~~~~~~a~~~~~-~i~f~~vd~~~~~-------------------------~~~~l~~  218 (432)
                      .++++++.|| ..| +.|....+.+.+...+|.. .+.++.+..+...                         ....+.+
T Consensus        32 ~GK~vVl~F~p~~~c~~C~~e~~~l~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~  111 (167)
T d1e2ya_          32 KGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAEINTEVISCSCDSEYSHLQWTSVDRKKGGLGPMAIPMLADKTKAIAR  111 (167)
T ss_dssp             TTSEEEEEECSCSSCSSCCHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCCCSSCEEECTTCHHHH
T ss_pred             CCCeEEEEEcccccccccchhhHHHHHHHHHhhcCceEEEeecCCcHHhHHHHHhhHHHhcccccccccccccchhHHHH
Confidence            4555556666 677 8999999999999999986 3555555443210                         0234567


Q ss_pred             hhCCC----CCCCcEEEEEeCCCCceecCC----CCCCHHHHHHHHHH
Q 013976          219 YFGIT----GEAPKVLAYTGNDDAKKHILD----GELTLDKIKTFGED  258 (432)
Q Consensus       219 ~~~i~----~~~~P~i~i~~~~~~~~y~~~----~~~~~~~i~~fi~~  258 (432)
                      .||+.    +...|+..+++.+...++.+.    ...+.+++.+.|+.
T Consensus       112 ~y~v~~~~~g~~~r~tfvID~~G~Ir~~~~~~~~~~~~~~evL~~l~a  159 (167)
T d1e2ya_         112 AYGVLDEDSGVAYRGVFIIDPNGKLRQIIINDMPIGRNVEEVIRLVEA  159 (167)
T ss_dssp             HHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred             HcCCCcccCCCceeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHH
Confidence            77763    223467777776654444321    23466777777655