Citrus Sinensis ID: 013984


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430--
MNLLEKIKKQKKKEPDKSMSVQEIPIYWFETSDSVTRHYQFQPDGHLSVKVVDDSRPVYHRVVDSFLNKFFPSGYPFSVNEGYLRYTQFRALQHFTSAALSVLSTQSLLFAAGLRPTPAQATVVSWILKDGMQHVGKLICSNLGARMDSEPKRWRILADALYDLGTGLEVLSPLCPQLFLEMAGLGNFAKGIAVVAARATRLPIYSSFAKEGNLSDLFAKGEAISTLFNVVGLGAGIQLASTVCSSMQGKMIVGPLLSVIHVYSVIEEMRAAPVNTLNPQRTAMIVADFVKTGRISSPADLRYREDLLFPGRLIEDAGNVKVGRDPHKVVKPSKFHELKELFAEEKFILCLGSRWTDMVLEQNASGEDALRGWLVAAYAASMAKSFHDPSLTVLQDAYDKMNDVFTPLLSELQAKGWHTDRFLDGTGTRFAW
ccHHHHHHHHcccccccccccccccEEEEEcccccEEEEEEcccccccEEEEccccHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccccHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccccHHHHHHHcccccccccccccccEEEccccccccccccHHHHHHHHccccEEEEEcccEEEEEEcccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccc
ccHHHHHHHccccccccccccccccEEEEEcccccEEEEEEcccccccEEEccccccccHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcHHHHHHHHEHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHEEEHHcccHHHHHHHHHHHHHccccccHHHHHHcccccccccccccccccEccccHHHcccHHHHHHHHHHHccccEEEEEccccEEEEEEccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcHHHHHHHHHccccHHHcccccccEEcc
MNLLEKIKKQkkkepdksmsvqeipiywfetsdsvtrhyqfqpdghlsvkvvddsrpvyHRVVDSFlnkffpsgypfsvnegylrYTQFRALQHFTSAALSVLSTQSLLFaaglrptpaQATVVSWILKDGMQHVGKLICSnlgarmdsepKRWRILADALYDLgtglevlsplcPQLFLEMAGLGNFAKGIAVVAARatrlpiyssfakegnlsdlfakGEAISTLFNVVGLGAGIQLASTVCSsmqgkmivgpLLSVIHVYSVIEEmraapvntlnpqrTAMIVADFVktgrisspadlryredllfpgrliedagnvkvgrdphkvvkpskfhELKELFAEEKFILCLGSRWTDMVLEQNASGEDALRGWLVAAYAASMaksfhdpsltVLQDAYDKMNDVFTPLLSELQakgwhtdrfldgtgtrfaw
mnllekikkqkkkepdksmsvqeipIYWFETSDSVTRHYQFQPDGHLSVKVVDDSRPVYHRVVDSFLNKFFPSGYPFSVNEGYLRYTQFRALQHFTSAALSVLSTQSLLFAAGLRPTPAQATVVSWILKDGMQHVGKLICSNLGARMDSEPKRWRILADALYDLGTGLEVLSPLCPQLFLEMAGLGNFAKGIAVVAARATRLPIYSSFAKEGNLSDLFAKGEAISTLFNVVGLGAGIQLASTVCSSMQGKMIVGPLLSVIHVYSVIEEMRAapvntlnpqrTAMIVADFVKtgrisspadlryredllfpgrliedagnvkvgrdphkvvkpskfhelkELFAEEKFILCLGSRWTDMVLEQNASGEDALRGWLVAAYAASMAKSFHDPSLTVLQDAYDKMNDVFTPLLSElqakgwhtdrflDGTGTRFAW
MNLLEkikkqkkkepdkSMSVQEIPIYWFETSDSVTRHYQFQPDGHLSVKVVDDSRPVYHRVVDSFLNKFFPSGYPFSVNEGYLRYTQFRALQHFTSAALSVLSTQSLLFAAGLRPTPAQATVVSWILKDGMQHVGKLICSNLGARMDSEPKRWRILADALYDLGTGLEVLSPLCPQLFLEMAGLGNFAKGIAVVAARATRLPIYSSFAKEGNLSDLFAKGEAISTLFNVVGLGAGIQLASTVCSSMQGKMIVGPLLSVIHVYSVIEEMRAAPVNTLNPQRTAMIVADFVKTGRISSPADLRYREDLLFPGRLIEDAGNVKVGRDPHKVVKPSKFHELKELFAEEKFILCLGSRWTDMVLEQNASGEDALRGWLVAAYAASMAKSFHDPSLTVLQDAYDKMNDVFTPLLSELQAKGWHTDRFLDGTGTRFAW
**********************EIPIYWFETSDSVTRHYQFQPDGHLSVKVVDDSRPVYHRVVDSFLNKFFPSGYPFSVNEGYLRYTQFRALQHFTSAALSVLSTQSLLFAAGLRPTPAQATVVSWILKDGMQHVGKLICSNLGARMDSEPKRWRILADALYDLGTGLEVLSPLCPQLFLEMAGLGNFAKGIAVVAARATRLPIYSSFAKEGNLSDLFAKGEAISTLFNVVGLGAGIQLASTVCSSMQGKMIVGPLLSVIHVYSVIEEMRAAPVNTLNPQRTAMIVADFVKTGRISSPADLRYREDLLFPGRLIEDAGNVKVGRDPHKVVKPSKFHELKELFAEEKFILCLGSRWTDMVLEQNASGEDALRGWLVAAYAASMAKSFHDPSLTVLQDAYDKMNDVFTPLLSELQAKGWHTDRFLDGT******
**************************YWFETSDSV*************************RVVDSFLNKFFPSGYPFSVNEGYLRYTQFRALQHFTSAALSVLSTQSLLFAAGLRPTPAQATVVSWILKDGMQHVGKLICSNLGARMDSEPKRWRILADALYDLGTGLEVLSPLCPQLFLEMAGLGNFAKGIAVVAARATRLPIYSSFAKEGNLSDLFAKGEAISTLFNVVGLGAGIQLASTVCSSMQGKMIVGPLLSVIHVYSVIEEMRAAPVNTLNPQRTAMIVADFVKTGRISSPADLRYREDLLFPGRLIEDAGNVKVGRDPHKVVKPSKFHELKELFAEEKFILCLGSRWTDMVLEQNASGEDALRGWLVAAYAASMAKSF****LTVLQDAYDKMNDVFTPLLSELQAKGWHTDRFLDGTGTRFAW
MNLLEKI************SVQEIPIYWFETSDSVTRHYQFQPDGHLSVKVVDDSRPVYHRVVDSFLNKFFPSGYPFSVNEGYLRYTQFRALQHFTSAALSVLSTQSLLFAAGLRPTPAQATVVSWILKDGMQHVGKLICSNLGARMDSEPKRWRILADALYDLGTGLEVLSPLCPQLFLEMAGLGNFAKGIAVVAARATRLPIYSSFAKEGNLSDLFAKGEAISTLFNVVGLGAGIQLASTVCSSMQGKMIVGPLLSVIHVYSVIEEMRAAPVNTLNPQRTAMIVADFVKTGRISSPADLRYREDLLFPGRLIEDAGNVKVGRDPHKVVKPSKFHELKELFAEEKFILCLGSRWTDMVLEQNASGEDALRGWLVAAYAASMAKSFHDPSLTVLQDAYDKMNDVFTPLLSELQAKGWHTDRFLDGTGTRFAW
*N******KQK********SVQEIPIYWFETSDSVTRHYQFQPDGHLSVKVVDDSRPVYHRVVDSFLNKFFPSGYPFSVNEGYLRYTQFRALQHFTSAALSVLSTQSLLFAAGLRPTPAQATVVSWILKDGMQHVGKLICSNLGARMDSEPKRWRILADALYDLGTGLEVLSPLCPQLFLEMAGLGNFAKGIAVVAARATRLPIYSSFAKEGNLSDLFAKGEAISTLFNVVGLGAGIQLASTVCSSMQGKMIVGPLLSVIHVYSVIEEMRAAPVNTLNPQRTAMIVADFVKTGRISSPADLRYREDLLFPGRLIEDAGNVKVGRDPHKVVKPSKFHELKELFAEEKFILCLGSRWTDMVLEQNASGEDALRGWLVAAYAASMAKSFHDPSLTVLQDAYDKMNDVFTPLLSELQAKGWHTDRFLDGTGTRFAW
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MNLLEKIKKQKKKEPDKSMSVQEIPIYWFETSDSVTRHYQFQPDGHLSVKVVDDSRPVYHRVVDSFLNKFFPSGYPFSVNEGYLRYTQFRALQHFTSAALSVLSTQSLLFAAGLRPTPAQATVVSWILKDGMQHVGKLICSNLGARMDSEPKRWRILADALYDLGTGLEVLSPLCPQLFLEMAGLGNFAKGIAVVAARATRLPIYSSFAKEGNLSDLFAKGEAISTLFNVVGLGAGIQLASTVCSSMQGKMIVGPLLSVIHVYSVIEEMRAAPVNTLNPQRTAMIVADFVKTGRISSPADLRYREDLLFPGRLIEDAGNVKVGRDPHKVVKPSKFHELKELFAEEKFILCLGSRWTDMVLEQNASGEDALRGWLVAAYAASMAKSFHDPSLTVLQDAYDKMNDVFTPLLSELQAKGWHTDRFLDGTGTRFAW
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query432 2.2.26 [Sep-21-2011]
Q91W34466 UPF0420 protein C16orf58 yes no 0.791 0.733 0.283 1e-29
Q499P8466 UPF0420 protein C16orf58 yes no 0.796 0.738 0.266 9e-29
Q5R8F6468 UPF0420 protein C16orf58 yes no 0.879 0.811 0.255 1e-28
Q96GQ5468 UPF0420 protein C16orf58 yes no 0.879 0.811 0.253 6e-28
Q86K80527 UPF0420 protein OS=Dictyo yes no 0.597 0.489 0.282 6e-26
>sp|Q91W34|CP058_MOUSE UPF0420 protein C16orf58 homolog OS=Mus musculus PE=2 SV=1 Back     alignment and function desciption
 Score =  131 bits (329), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 108/381 (28%), Positives = 181/381 (47%), Gaps = 39/381 (10%)

Query: 70  FFPSGYPFSVNEGYLRYTQFRALQHFTSAALSVLSTQSLLFAAGLRPTPAQ--ATVVSWI 127
             P G+P SV+  YL Y  + ++Q F S+    L+TQ++L   G+    A   A   +W+
Sbjct: 75  LLPQGFPDSVSPDYLPYQLWDSVQAFASSLSGSLATQAVLQGLGVGNAKASVSAATSTWL 134

Query: 128 LKDGMQHVGKLICSNL-GARMDSEPKRWRILADALYDLGTGLEVLSPLCPQLFLEMAGLG 186
           +KD    +G++I +   G+++D   K+WR+ AD L D+   LE+++P+ P  F       
Sbjct: 135 VKDSTGMLGRIILAWWKGSKLDCNAKQWRLFADILNDVAMFLEIMAPMYPIFFTMTVSTS 194

Query: 187 NFAKGIAVVAARATRLPIYSSFAKEGNLSDLFAKGEAISTLFNVVGLGAGIQLASTV--C 244
           N AK I  VA  ATR  +    A+  N++D+ AK  +  T+ N+ GL   + +   V  C
Sbjct: 195 NLAKCIVGVAGGATRAALTMHQARRNNMADVSAKDSSQETVVNLAGLLVSLLMLPLVSDC 254

Query: 245 SSMQGKMIVGPLLSVIHVYSVIEEMRAAPVNTLNPQRTAMIVADFVKTGRISSPADLRYR 304
            S+     V  LL+ +H+Y+    +RA  + TLN  R  +++  F++ G +  PA     
Sbjct: 255 PSLSLGCFV--LLTALHIYANYRAVRALVLETLNESRLQLVLEHFLQRGEVLEPASANQM 312

Query: 305 EDL---LFPGRLIEDAGNVKVGRDPHKVVKPSKFHELKELFA--EEKFILCLGS--RWTD 357
           E L    +P        ++ +G   H +V  S   ELK+L     E ++LC         
Sbjct: 313 EPLWTGFWPSL------SLSLGVPLHHLV--SSVSELKQLVEGHHEPYLLCWNKSRNQVQ 364

Query: 358 MVLEQNASGEDALR----GWLVAAYA------ASMAKSFH----DP---SLTVLQDAYDK 400
           + L Q A  E  LR    G ++ A          +A+  H    DP   S  ++++ +  
Sbjct: 365 VALSQEAGPETVLRAATHGLILGALQEDGPLPGELAELRHQVQADPKKESWILVRETHQV 424

Query: 401 MNDVFTPLLSELQAKGWHTDR 421
           ++ +F   L  LQA GW T++
Sbjct: 425 LDTLFPKFLKGLQAAGWKTEK 445





Mus musculus (taxid: 10090)
>sp|Q499P8|CP058_RAT UPF0420 protein C16orf58 homolog OS=Rattus norvegicus PE=2 SV=1 Back     alignment and function description
>sp|Q5R8F6|CP058_PONAB UPF0420 protein C16orf58 homolog OS=Pongo abelii PE=2 SV=1 Back     alignment and function description
>sp|Q96GQ5|CP058_HUMAN UPF0420 protein C16orf58 OS=Homo sapiens GN=C16orf58 PE=1 SV=2 Back     alignment and function description
>sp|Q86K80|U420_DICDI UPF0420 protein OS=Dictyostelium discoideum GN=DDB_G0277179 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query432
224082810428 predicted protein [Populus trichocarpa] 0.990 1.0 0.833 0.0
297744143424 unnamed protein product [Vitis vinifera] 0.981 1.0 0.833 0.0
225438149420 PREDICTED: UPF0420 protein C16orf58 homo 0.969 0.997 0.838 0.0
255567274436 conserved hypothetical protein [Ricinus 0.997 0.988 0.814 0.0
334184613432 uncharacterized protein [Arabidopsis tha 1.0 1.0 0.777 0.0
18402585433 uncharacterized protein [Arabidopsis tha 0.995 0.993 0.779 0.0
449462449428 PREDICTED: UPF0420 protein C16orf58 homo 0.990 1.0 0.766 0.0
449502048428 PREDICTED: UPF0420 protein C16orf58 homo 0.990 1.0 0.763 0.0
297826561419 hypothetical protein ARALYDRAFT_482047 [ 0.969 1.0 0.752 0.0
356545865431 PREDICTED: UPF0420 protein C16orf58 homo 0.986 0.988 0.755 0.0
>gi|224082810|ref|XP_002306848.1| predicted protein [Populus trichocarpa] gi|222856297|gb|EEE93844.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  754 bits (1947), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/432 (83%), Positives = 393/432 (90%), Gaps = 4/432 (0%)

Query: 1   MNLLEKIKKQKKKEPDKSMSVQEIPIYWFETSDSVTRHYQFQPDGHLSVKVVDDSRPVYH 60
           MNLL+KIK QKK EPDK+    EIP+YW ETSDSV+RH+QF+PDG LS+KVVDD+RPVY 
Sbjct: 1   MNLLDKIKMQKK-EPDKT---PEIPVYWIETSDSVSRHFQFEPDGQLSMKVVDDARPVYR 56

Query: 61  RVVDSFLNKFFPSGYPFSVNEGYLRYTQFRALQHFTSAALSVLSTQSLLFAAGLRPTPAQ 120
           RVV+SFLNKFFPSGYP+SVNEGYLRYTQFRALQHF+SAALSVLSTQSLLFAAGLRPTPAQ
Sbjct: 57  RVVESFLNKFFPSGYPYSVNEGYLRYTQFRALQHFSSAALSVLSTQSLLFAAGLRPTPAQ 116

Query: 121 ATVVSWILKDGMQHVGKLICSNLGARMDSEPKRWRILADALYDLGTGLEVLSPLCPQLFL 180
           AT VSWILKDGMQH GKLICSNLGARMDSEPKRWRILAD LYDLGTGLEVLSPLCP LFL
Sbjct: 117 ATAVSWILKDGMQHAGKLICSNLGARMDSEPKRWRILADVLYDLGTGLEVLSPLCPHLFL 176

Query: 181 EMAGLGNFAKGIAVVAARATRLPIYSSFAKEGNLSDLFAKGEAISTLFNVVGLGAGIQLA 240
           E+AGLGNFAKG+AVVAARATRLPIYSSFAKEGNLSDLFAKGEAISTLFNV+GLG GIQLA
Sbjct: 177 EVAGLGNFAKGMAVVAARATRLPIYSSFAKEGNLSDLFAKGEAISTLFNVLGLGVGIQLA 236

Query: 241 STVCSSMQGKMIVGPLLSVIHVYSVIEEMRAAPVNTLNPQRTAMIVADFVKTGRISSPAD 300
           STVCSSMQGK + GPLLS++HV  VIEEMRA PVNTLNPQRTAM+VADFVKTG+ISSPAD
Sbjct: 237 STVCSSMQGKFVAGPLLSIVHVCCVIEEMRATPVNTLNPQRTAMVVADFVKTGKISSPAD 296

Query: 301 LRYREDLLFPGRLIEDAGNVKVGRDPHKVVKPSKFHELKELFAEEKFILCLGSRWTDMVL 360
           LRY EDLLFPGRLIE+AGNVKVG+  H+ V+PSK  ELKE+F  EKFIL  G++WTD+VL
Sbjct: 297 LRYHEDLLFPGRLIENAGNVKVGQALHRAVRPSKLRELKEIFPGEKFILSPGNKWTDLVL 356

Query: 361 EQNASGEDALRGWLVAAYAASMAKSFHDPSLTVLQDAYDKMNDVFTPLLSELQAKGWHTD 420
           EQNASGEDALR WLVAAYA+SM KS H+ +   LQDAY+KMN VF P LSELQAKGWHTD
Sbjct: 357 EQNASGEDALRAWLVAAYASSMKKSSHESTSVTLQDAYEKMNSVFDPFLSELQAKGWHTD 416

Query: 421 RFLDGTGTRFAW 432
           RFLDGTG+RF+W
Sbjct: 417 RFLDGTGSRFSW 428




Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744143|emb|CBI37113.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225438149|ref|XP_002273202.1| PREDICTED: UPF0420 protein C16orf58 homolog [Vitis vinifera] Back     alignment and taxonomy information
>gi|255567274|ref|XP_002524618.1| conserved hypothetical protein [Ricinus communis] gi|223536171|gb|EEF37826.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|334184613|ref|NP_001189649.1| uncharacterized protein [Arabidopsis thaliana] gi|330253412|gb|AEC08506.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|18402585|ref|NP_565718.1| uncharacterized protein [Arabidopsis thaliana] gi|20197897|gb|AAD20664.2| expressed protein [Arabidopsis thaliana] gi|21553562|gb|AAM62655.1| unknown [Arabidopsis thaliana] gi|109134157|gb|ABG25076.1| At2g31190 [Arabidopsis thaliana] gi|330253411|gb|AEC08505.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449462449|ref|XP_004148953.1| PREDICTED: UPF0420 protein C16orf58 homolog [Cucumis sativus] Back     alignment and taxonomy information
>gi|449502048|ref|XP_004161529.1| PREDICTED: UPF0420 protein C16orf58 homolog [Cucumis sativus] Back     alignment and taxonomy information
>gi|297826561|ref|XP_002881163.1| hypothetical protein ARALYDRAFT_482047 [Arabidopsis lyrata subsp. lyrata] gi|297327002|gb|EFH57422.1| hypothetical protein ARALYDRAFT_482047 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356545865|ref|XP_003541354.1| PREDICTED: UPF0420 protein C16orf58 homolog [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query432
TAIR|locus:2042536433 RUS2 "AT2G31190" [Arabidopsis 0.956 0.953 0.794 2.6e-182
TAIR|locus:2155436497 RUS6 "AT5G49820" [Arabidopsis 0.793 0.690 0.323 4e-42
TAIR|locus:2077197608 RUS1 "AT3G45890" [Arabidopsis 0.666 0.473 0.303 1.1e-33
ZFIN|ZDB-GENE-070410-89435 zgc:162613 "zgc:162613" [Danio 0.833 0.827 0.279 1.2e-33
MGI|MGI:2384572466 BC017158 "cDNA sequence BC0171 0.793 0.736 0.292 8.5e-33
TAIR|locus:2023885440 RUS3 "AT1G13770" [Arabidopsis 0.847 0.831 0.256 5.4e-31
TAIR|locus:2149745509 RUS5 "AT5G01510" [Arabidopsis 0.805 0.683 0.281 7.5e-31
RGD|1310127466 RGD1310127 "similar to cDNA se 0.798 0.740 0.272 8.8e-31
UNIPROTKB|Q96GQ5468 C16orf58 "UPF0420 protein C16o 0.879 0.811 0.255 3e-30
DICTYBASE|DDB_G0277179527 DDB_G0277179 "DUF647 family pr 0.629 0.516 0.293 4.9e-28
TAIR|locus:2042536 RUS2 "AT2G31190" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1769 (627.8 bits), Expect = 2.6e-182, P = 2.6e-182
 Identities = 328/413 (79%), Positives = 374/413 (90%)

Query:    20 SVQEIPIYWFETSDSVTRHYQFQPDGHLSVKVVDDSRPVYHRVVDSFLNKFFPSGYPFSV 79
             S ++ P+YWFETSDSV+  YQFQ DGHLS+KVVDD+RPV  ++V+SFLNKFFPSGYP+SV
Sbjct:    21 SPEDFPVYWFETSDSVSHRYQFQSDGHLSMKVVDDARPVPQKMVESFLNKFFPSGYPYSV 80

Query:    80 NEGYLRYTQFRALQHFTSAALSVLSTQSLLFAAGLRPTPAQATVVSWILKDGMQHVGKLI 139
             NEGYLRYTQFRALQHF+SAALSVLSTQSLLFAAGLRPTPAQATVVSWILKDGMQHVGKLI
Sbjct:    81 NEGYLRYTQFRALQHFSSAALSVLSTQSLLFAAGLRPTPAQATVVSWILKDGMQHVGKLI 140

Query:   140 CSNLGARMDSEPKRWRILADALYDLGTGLEVLSPLCPQLFLEMAGLGNFAKGIAVVAARA 199
             CSNLGARMDSEPKRWRILAD LYDLGTGLE++SPLCP LFLEMAGLGNFAKG+A VAARA
Sbjct:   141 CSNLGARMDSEPKRWRILADVLYDLGTGLELVSPLCPHLFLEMAGLGNFAKGMATVAARA 200

Query:   200 TRLPIYSSFAKEGNLSDLFAKGEAISTLFNVVGLGAGIQLASTVCSSMQGKMIVGPLLSV 259
             TRLPIYSSFAKEGNLSD+FAKGEAISTLFNV G+GAGIQLAST+CSSM+GK++VG +LSV
Sbjct:   201 TRLPIYSSFAKEGNLSDIFAKGEAISTLFNVAGIGAGIQLASTICSSMEGKLVVGSILSV 260

Query:   260 IHVYSVIEEMRAAPVNTLNPQRTAMIVADFVKTGRISSPADLRYREDLLFPGRLIEDAGN 319
             +HVYSV+E+MR  P+NTLNPQRTA+IVA+F+KTG++ SP DLR++EDL+FP R I+DAGN
Sbjct:   261 VHVYSVVEQMRGVPINTLNPQRTALIVANFLKTGKVPSPPDLRFQEDLMFPERPIQDAGN 320

Query:   320 VKVGRDPHKVVKPSKFHELKELFAEEKFILCLGSRWTDMVLEQNASGEDALRGWLVAAYA 379
             VKVGR  HK VKPS+   LK++F EEKF+L  G  WTDMVLE +A+GEDALRGWLVAAY 
Sbjct:   321 VKVGRALHKAVKPSEVQRLKQVFVEEKFLLSHGKSWTDMVLEHDATGEDALRGWLVAAYV 380

Query:   380 ASMAKSFHDPSLTVLQDAYDKMNDVFTPLLSELQAKGWHTDRFLDGTGTRFAW 432
              SM K ++DP   +LQDAYDKMNDVF P LS++QAKGW+TDRFLDGTGTRFAW
Sbjct:   381 KSMTKIYNDPDDIILQDAYDKMNDVFNPFLSQVQAKGWYTDRFLDGTGTRFAW 433




GO:0009941 "chloroplast envelope" evidence=IDA
GO:0005739 "mitochondrion" evidence=IDA
GO:0009536 "plastid" evidence=IDA
GO:0010224 "response to UV-B" evidence=IMP
GO:0009926 "auxin polar transport" evidence=IMP
TAIR|locus:2155436 RUS6 "AT5G49820" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077197 RUS1 "AT3G45890" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070410-89 zgc:162613 "zgc:162613" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:2384572 BC017158 "cDNA sequence BC017158" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
TAIR|locus:2023885 RUS3 "AT1G13770" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2149745 RUS5 "AT5G01510" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
RGD|1310127 RGD1310127 "similar to cDNA sequence BC017158" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q96GQ5 C16orf58 "UPF0420 protein C16orf58" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0277179 DDB_G0277179 "DUF647 family protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
estExt_Genewise1_v1.C_LG_V1225
hypothetical protein (428 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query432
pfam04884251 pfam04884, DUF647, Protein of unknown function (DU 1e-101
>gnl|CDD|191120 pfam04884, DUF647, Protein of unknown function (DUF647) Back     alignment and domain information
 Score =  302 bits (775), Expect = e-101
 Identities = 109/250 (43%), Positives = 161/250 (64%), Gaps = 3/250 (1%)

Query: 49  VKVVDDSRPVYHRVVDSFLNKFFPSGYPFSVNEGYLRYTQFRALQHFTSAALSVLSTQSL 108
            K+   +  +  R+V S LN F P GYP SV E YL Y  + +LQ F+S+   VL+TQ+L
Sbjct: 1   SKLDLKAGKLRSRLVSSLLNVFLPEGYPDSVTEDYLPYQLWDSLQAFSSSISGVLATQAL 60

Query: 109 LFAAGL--RPTPAQATVVSWILKDGMQHVGKLICSN-LGARMDSEPKRWRILADALYDLG 165
           L   G+        A  + WILKDG   +G+++ ++ LG+ +DSEPK+WR+LAD L DL 
Sbjct: 61  LEGVGVGSSSALPTAAAILWILKDGTGRLGRILFAHRLGSALDSEPKKWRLLADVLNDLA 120

Query: 166 TGLEVLSPLCPQLFLEMAGLGNFAKGIAVVAARATRLPIYSSFAKEGNLSDLFAKGEAIS 225
            GLE+L+PL PQLFL +A   N AK +A VAA ATR  + + FA  GNL+D+ AK E+  
Sbjct: 121 MGLELLTPLFPQLFLPLASAANVAKSLAGVAAGATRASLTAHFALRGNLADVSAKDESQE 180

Query: 226 TLFNVVGLGAGIQLASTVCSSMQGKMIVGPLLSVIHVYSVIEEMRAAPVNTLNPQRTAMI 285
           TL N++GL  GI LASTV +S     +   LLSV+H+Y+  + +R+  + TLN QR +++
Sbjct: 181 TLVNLLGLLVGILLASTVSTSAALTWVSFGLLSVVHLYANYQAVRSVQLRTLNRQRASIV 240

Query: 286 VADFVKTGRI 295
           + +++K+G++
Sbjct: 241 LEEYLKSGKV 250


In plants, this domain plays a role in auxin-transport, plant growth and development. Length = 251

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 432
KOG4249408 consensus Uncharacterized conserved protein [Funct 100.0
PF04884250 DUF647: Vitamin B6 photo-protection and homoeostas 100.0
>KOG4249 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
Probab=100.00  E-value=2.3e-97  Score=744.56  Aligned_cols=377  Identities=39%  Similarity=0.602  Sum_probs=351.5

Q ss_pred             CCchhhhhHHHHHHHhhcCCCCCCccccCccchhHHHHhhHHhhhhhhhHhHHHHHHHhCCCCChhHHHHHHHHHHhhhh
Q 013984           54 DSRPVYHRVVDSFLNKFFPSGYPFSVNEGYLRYTQFRALQHFTSAALSVLSTQSLLFAAGLRPTPAQATVVSWILKDGMQ  133 (432)
Q Consensus        54 ~~~~~~~~~~~~l~~~FLP~GyP~SVs~dYl~Y~~w~~~q~f~ss~~~vLstqalL~avGv~~a~~~AAa~~WvlKDg~G  133 (432)
                      ++.+..+.+...+..++.|+|||+||++||++|+.|+.+|+|+|.++|+|+|||+|.++|++.+.++|||++||+|||+|
T Consensus         6 ~~~~lpq~~~~l~~~~~~p~gfP~Svn~~yl~y~~wr~vq~f~s~~~gvl~tqSll~~~g~~~a~~sAaai~WvlKDg~G   85 (408)
T KOG4249|consen    6 DSSDLPQYPGKLLSTFLPPEGFPKSVNSSYLPYLLWRAVQHFASALSGVLATQSLLAAVGAGIAAASAAAIRWVLKDGIG   85 (408)
T ss_pred             CcccchhhhhhhhhhhcCCcCCCCcCCccccchhhhHHHHHHHhhhhhhhhhHHHHhhhcccccchhhhHhhhhhhcccc
Confidence            34566777888888999999999999999999999999999999999999999999999999988999999999999999


Q ss_pred             hHHHHHHhhccCccCCCCceehhhHHHHHHHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHhhhhhhhhHhhhhhhcCC
Q 013984          134 HVGKLICSNLGARMDSEPKRWRILADALYDLGTGLEVLSPLCPQLFLEMAGLGNFAKGIAVVAARATRLPIYSSFAKEGN  213 (432)
Q Consensus       134 ~lg~ilfa~~G~~~D~d~K~wRl~ad~l~d~a~~lEl~tP~~P~~fl~la~la~~~K~i~~va~~atra~i~~hFA~~~N  213 (432)
                      ++|+|+|++.|++||+|||+||++||+|+|+|+++|++||+||++||+++|.+|++|+++.|+..+||++|++|||++||
T Consensus        86 ~lgkll~~~~G~~fD~~pKqwR~~aD~l~~lg~g~elatp~~P~~Fl~~a~t~N~ak~va~v~~~atrs~i~~~fA~~~N  165 (408)
T KOG4249|consen   86 DLGKLLCADEGSKFDDDPKQWRLLADLLWDLGRGLELATPLYPHFFLPLASTGNLAKYVAAVALHATRSPIYQHFAKQGN  165 (408)
T ss_pred             hhhhhhhcccccccCCCHHHHHHHHHHHHHHHHHHHhhhhhcchhhhhhhhhhhHHHHHHHHHccchHhHHHHHHHhhcc
Confidence            99999999889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccchhHHHHHHHHHHhHhhHhhhhhccccchhHHHHHHHHHHHHHHhhhhhhcccCCccCHHHHHHHHHHHHhcC
Q 013984          214 LSDLFAKGEAISTLFNVVGLGAGIQLASTVCSSMQGKMIVGPLLSVIHVYSVIEEMRAAPVNTLNPQRTAMIVADFVKTG  293 (432)
Q Consensus       214 laDv~AK~~sqet~~~L~Gl~~Gi~l~~~v~~~~~~~~~~~~~l~~~Hl~~ny~avr~v~l~tLN~~R~~iv~~~~l~~g  293 (432)
                      +|||.||+|||+|+++++|+++||++++.++..+..+++++.+++++|||+||+++|+|+|+|||++|++|++++|+++|
T Consensus       166 ~~dV~Akges~~~~~~laG~g~gili~~~i~~~~~~~l~~f~ils~~hly~~yq~~r~i~l~TLN~~R~~live~~l~~g  245 (408)
T KOG4249|consen  166 FGDVGAKGESQSTASNLAGLGFGILILGRIGACKPLPLVTFGILSTVHLYSNYQSLRHIQLNTLNPDRLRLIVESYLKTG  245 (408)
T ss_pred             HHHHhhhhhHHHHHHHHHHhHHHHHhcCcccCCCCcceeeehhhHHHHHHHHHHhhheeeeeccCHHHHHHHHHHHHhhC
Confidence            99999999999999999999999999999998876778888899999999999999999999999999999999999999


Q ss_pred             CCCCHHHHhhccCcc-CCCcccCCCcceEEecCccccCCc-----hhHHHHHHhcCCCCeEEEecCeEeEEEEcCCCChH
Q 013984          294 RISSPADLRYREDLL-FPGRLIEDAGNVKVGRDPHKVVKP-----SKFHELKELFAEEKFILCLGSRWTDMVLEQNASGE  367 (432)
Q Consensus       294 ~V~sp~evn~~E~i~-~~~~~~~~~~~i~iG~sl~~~~~~-----~~l~~l~~~f~~e~YiL~~~~~~~~V~L~~~at~~  367 (432)
                      +||+|.|+|++|+|+ .+++  ...++|++|+++++++++     ++...+.+.|.+|+|++...+++++|+|+++|||+
T Consensus       246 ~VPsp~e~n~~E~i~~~~~~--~~~~~I~~G~~l~~a~~~~~~~~~~~~~l~~~~~~e~~~lt~~K~~~~v~Lk~~Ats~  323 (408)
T KOG4249|consen  246 QVPSPAEVNEEEPIFGSRPS--ADAWPIRLGVLLHKAVSDTLSSMSMQQLLFGYFETEKLILTGFKGGFVVVLKEGATSV  323 (408)
T ss_pred             CCCChhhhhhhccccccccc--ccCcCeeeccchhhhhccccccHHHHHHHHHHHHHhheeeccCCCcEEEEEecCCChH
Confidence            999999999999999 3332  245799999999999873     45566778899999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccCC-------------CCchhHHHHHHHHHHhhHHHHHHHHHhCCccCCccccccccccCC
Q 013984          368 DALRGWLVAAYAASMAKSFH-------------DPSLTVLQDAYDKMNDVFTPLLSELQAKGWHTDRFLDGTGTRFAW  432 (432)
Q Consensus       368 D~LkA~~hA~~l~~~~~~~~-------------~~~~~~l~~S~~~~~~~f~~fl~~L~~~GW~~~~~ll~~~~~r~~  432 (432)
                      |+||+.||++++.+.+..+.             .+....++||++++++.|..|+++++++||.|++.++++++.|++
T Consensus       324 DvLr~l~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~esld~~~~~f~~fl~~~~~~GW~t~~~ll~~~~~~~~  401 (408)
T KOG4249|consen  324 DVLRSLFQACYLYKLMGASRTKRSYLPASKKTLDDVTLRLHESLDMMRDKFIAFLSQMQEQGWITEESLLSPGEQRRY  401 (408)
T ss_pred             HHHHHHHHHHHHHHHhcCCcccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhccceeehhhcCCcceEEE
Confidence            99999999999999876521             112468999999999999999999999999999999999988764



>PF04884 DUF647: Vitamin B6 photo-protection and homoeostasis; InterPro: IPR006968 This is a family of proteins of unknown function, restricted to eukaryotes Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query432
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-07
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 54.9 bits (131), Expect = 3e-08
 Identities = 67/494 (13%), Positives = 129/494 (26%), Gaps = 157/494 (31%)

Query: 33  DSVTRHYQFQPDGHLSVKVVDDSRPVYHRVVDSFLNKFFPSGYPFS---VNEGYLRYTQF 89
           + +  +Y+F       +K       +  R+     ++ +     F+   V+    R   +
Sbjct: 85  EVLRINYKFLMS---PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS----RLQPY 137

Query: 90  RALQHFTSAALSVLSTQSLLFAAGLRPTPAQATVVSWILKDGMQHVGKLICSNLGARMDS 149
             L+            Q+LL    LRP          +L DG+   GK   + +   +  
Sbjct: 138 LKLR------------QALL---ELRPAK-------NVLIDGVLGSGK---TWVALDVCL 172

Query: 150 EPKRWRILADALYDLGTG--------LEVLSPLCPQLFLEMAGLGNFAKGIAV----VAA 197
             K    +   ++ L           LE+L  L  Q+        + +  I +    + A
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232

Query: 198 RATRL-------------------PIYSSF---------------------AKEGNLS-- 215
              RL                     +++F                     A   ++S  
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292

Query: 216 ---DLFAKGEAISTLFNVVGLGAGIQLASTVCSSMQGKMIVGPLLSVIHVYSVIEEMRAA 272
                    E  S L   +       L   V +         P        S+I E    
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQ-DLPREVLT-------TNPR-----RLSIIAESIRD 339

Query: 273 PVNT------LNPQRTAMIVADFVKTGRISSPADLR--YREDLLFPGRLIEDAGNVKVGR 324
            + T      +N  +   I+   +    +  PA+ R  +    +FP           +  
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLN---VLEPAEYRKMFDRLSVFP----PS---AHI-- 387

Query: 325 DPHKVVK---PSKFHELKELFAEEKFILCLGSRWTD----------MVLEQNASGEDALR 371
            P  ++             +   +     L  +             + L+     E AL 
Sbjct: 388 -PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH 446

Query: 372 GWLVAAYAASMAKSFHDPSLTVLQDAY--------------DKMNDVFTPL---LSELQA 414
             +V  Y         D     L D Y               +   +F  +      L+ 
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYL-DQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ 505

Query: 415 KGWHTDRFLDGTGT 428
           K  H     + +G+
Sbjct: 506 KIRHDSTAWNASGS 519


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00