Citrus Sinensis ID: 013990


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430--
MGACGSKFLSKKKLKSKRISKRRVSFNKLDKIDECGKRDARCHSNSSTLLASKEFAWFDCCSALDQSEIDDDFYSVHDDFEDASTLRVASPRDSFNQKDQNGDAWNGQLPCVASAMSSDDKARVSSPRAPGAKRKLLSRLSFKFKEGHNNQNSFPPKVLLQRPKAGSSLSFCPLEKKMSNSWSPIEPSTFRVRGQNYLRDKKKDFAPNFAAYCPFAADVFLSQRKIDHIARFVDLPVIDSSEELPSILVVNLQIPLYPAAIFQGENDGEGMNLVLYFKLSESYSKDLPVHFQEHVNRIINDEVERVKGFPLDTINSFRERLKILSRLVNGEDLHLSTTEKKILNTYNEKPVLSRPQHEFYLGENYFEIDLDVHRFSYLSRKTFAAFQDRFKLCKLDFGLTIQENKTENLPENMLCCIRLNEIDYSNYRQLGV
cccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccHHHccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccEEEEEEEEEcccccHHHccccccccccccccccEEEEEEEccccccccccccccccccEEEEEEEEcccccccccccHHHHHHHcccHHHHHHHcccccccHHHHHcEEEEEEEccccccccccccccccccccccccEEcccccccccccEEEEEEEccccHHHHHHHHHHHHHccccEEEEEEEEEEEcccccccccEEEEEEEccccccccccccc
ccccccccccccccccHHHHccccccccccccccccccccccccccccccccHHHHHEcccEEEccccccccccccccccHHHHHcccccHHHcccccccccccccccccccccccccccccccccccccccccccEEEEEEEEccccccccccccHHHcEccccccccccccccccccccccccccccEEEEccccccccccccccccccHcHEEEEEEcccccHHHHHcccccccccccccccEEEEEEEEccccccHHcccccccccEEEEEEEEccccHHccccccccHHHHHHHcccHHHHccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccEEEcccccEEccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHEEHHHEHEEcccHHHccHHEEEEEEEEccEccccccccc
mgacgskflskkklkskRISKRRVSFnkldkidecgkrdarchsnsstllaskefawfdccsaldqseidddfysvhddfedastlrvasprdsfnqkdqngdawngqlpcvasamssddkarvssprapgakrKLLSRLSFKfkeghnnqnsfppkvllqrpkagsslsfcplekkmsnswspiepstfrvrgqnylrdkkkdfapnfaaycpfaadVFLSQRKIDHiarfvdlpvidsseelpsILVVnlqiplypaaifqgendgegMNLVLYFKLSesyskdlpvHFQEHVNRIINDevervkgfpldtiNSFRERLKILSRLvngedlhlSTTEKKILNtynekpvlsrpqhefylgenyfeidldvhrfsylsrkTFAAFQDRFKLCkldfgltiqenktenlpenmlccirlneidysnyrqlgv
mgacgskflskkklkskriskrrvsfnkldkidecgkrdarchsnsstllaskEFAWFDCCSALDQSEIDDDFYSVHDDFEDASTlrvasprdsfnqkdqngdawNGQLPCVASAMssddkarvssprapgakrkLLSRLSFKFkeghnnqnsfppkvllqrpKAGSSLSFCPLEKkmsnswspiepstfRVRGQNYLRDKKKDFAPNFAAYCPFAADVFLSQRKIDHIARFVDLPVIDSSEELPSILVVNLQIPLYPAAIFQGENDGEGMNLVLYFKLSESYSKDLPVHFQEHVNRIindevervkgfpldtiNSFRERLKILsrlvngedlhlsttekkilntynekpvlsrPQHEFYLGENYFEIDLDVHRFSYLSRKTFAAFQDRFKLCKLDFGLTIqenktenlpeNMLCCIRlneidysnyrqlgv
MGACGskflskkklkskriskrrvsfNKLDKIDECGKRDARCHSNSSTLLASKEFAWFDCCSALDQSEIDDDFYSVHDDFEDASTLRVASPRDSFNQKDQNGDAWNGQLPCVASAMSSDDKARVSSPRAPGAKRKLLSRLSFKFKEGHNNQNSFPPKVLLQRPKAGSSLSFCPLEKKMSNSWSPIEPSTFRVRGQNYLRDKKKDFAPNFAAYCPFAADVFLSQRKIDHIARFVDLPVIDSSEELPSILVVNLQIPLYPAAIFQGENDGEGMNLVLYFKLSESYSKDLPVHFQEHVNRIINDEVERVKGFPLDTINSFRERLKILSRLVNGEDLHLSTTEKKILNTYNEKPVLSRPQHEFYLGENYFEIDLDVHRFSYLSRKTFAAFQDRFKLCKLDFGLTIQENKTENLPENMLCCIRLNEIDYSNYRQLGV
**********************************************STLLASKEFAWFDCCSALDQSEIDDDFYSVHDDF*************************************************************************************************************FRVRGQNYLRDKKKDFAPNFAAYCPFAADVFLSQRKIDHIARFVDLPVIDSSEELPSILVVNLQIPLYPAAIFQGENDGEGMNLVLYFKLSESYSKDLPVHFQEHVNRIINDEVERVKGFPLDTINSFRERLKILSRLVNGEDLHLSTTEKKILNTYNEKPVLSRPQHEFYLGENYFEIDLDVHRFSYLSRKTFAAFQDRFKLCKLDFGLTIQENKTENLPENMLCCIRLNEIDYSNY*****
***************************************************SKEFAWFDCCSALDQSEIDDDFYSVHDDF********************NGDAWNGQLP*************************************************LQRPKAGSSLS***********WSPIEPSTFRVRGQNYLRDKKKDFAPNFAAYCPFAADVFLSQRKIDHIARF*********EELPSILVVNLQIPLYPAAIFQGENDGEGMNLVLYFKLSESYS*********HVNRIINDEVERVKGFPLDTINSFRERLKILSRLVNGEDLHLSTTEKKILNTYNEKPVLSRPQHEFYLGENYFEIDLDVHRFSYLSRKTFAAFQDRFKLCKLDFGLTIQENKTENLPENMLCCIRLNEIDYSNYRQLGV
*******************SKRRVSFNKLDKIDECGKRDARCHSNSSTLLASKEFAWFDCCSALDQSEIDDDFYSVHDDFEDASTLRVASPRDSFNQKDQNGDAWNGQLPCVAS******************KRKLLSRLSFKFKEGHNNQNSFPPKVLLQRPKAGSSLSFCPLEKKMSNSWSPIEPSTFRVRGQNYLRDKKKDFAPNFAAYCPFAADVFLSQRKIDHIARFVDLPVIDSSEELPSILVVNLQIPLYPAAIFQGENDGEGMNLVLYFKLSESYSKDLPVHFQEHVNRIINDEVERVKGFPLDTINSFRERLKILSRLVNGEDLHLSTTEKKILNTYNEKPVLSRPQHEFYLGENYFEIDLDVHRFSYLSRKTFAAFQDRFKLCKLDFGLTIQENKTENLPENMLCCIRLNEIDYSNYRQLGV
**************************************************ASKEFAWFDCCSALDQSEIDDDFYSVHDDFEDASTLR************QNGDAWNGQLPCV*S********************KLLSRLSFKFKEGHNNQNSFPPKVLLQRPKAGSSLSFCPLEKKMSNSWSPIEPSTFRVRGQNYLRDKKKDFAPNFAAYCPFAADVFLSQRKIDHIARFVDLPVIDSSEELPSILVVNLQIPLYPAAIFQGENDGEGMNLVLYFKLSESYSKDLPVHFQEHVNRIINDEVERVKGFPLDTINSFRERLKILSRLVNGEDLHLSTTEKKILNTYNEKPVLSRPQHEFYLGENYFEIDLDVHRFSYLSRKTFAAFQDRFKLCKLDFGLTIQENKTENLPENMLCCIRLNEIDYSNY*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGACGSKFLSKKKLKSKRISKRRVSFNKLDKIDECGKRDARCHSNSSTLLASKEFAWFDCCSALDQSEIDDDFYSVHDDFEDASTLRVASPRDSFNQKDQNGDAWNGQLPCVASAMSSDDKARVSSPRAPGAKRKLLSRLSFKFKEGHNNQNSFPPKVLLQRPKAGSSLSFCPLEKKMSNSWSPIEPSTFRVRGQNYLRDKKKDFAPNFAAYCPFAADVFLSQRKIDHIARFVDLPVIDSSEELPSILVVNLQIPLYPAAIFQGENDGEGMNLVLYFKLSESYSKDLPVHFQEHVNRIINDEVERVKGFPLDTINSFRERLKILSRLVNGEDLHLSTTEKKILNTYNEKPVLSRPQHEFYLGENYFEIDLDVHRFSYLSRKTFAAFQDRFKLCKLDFGLTIQENKTENLPENMLCCIRLNEIDYSNYRQLGV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query432
255552782483 conserved hypothetical protein [Ricinus 0.990 0.886 0.571 1e-140
296087747479 unnamed protein product [Vitis vinifera] 0.990 0.893 0.577 1e-139
224140901478 predicted protein [Populus trichocarpa] 0.921 0.832 0.590 1e-137
225452618532 PREDICTED: uncharacterized protein LOC10 0.731 0.593 0.714 1e-135
449461897439 PREDICTED: uncharacterized protein LOC10 0.900 0.886 0.610 1e-133
255638564440 unknown [Glycine max] 0.962 0.945 0.561 1e-132
356572108440 PREDICTED: uncharacterized protein LOC10 0.965 0.947 0.554 1e-132
356550488436 PREDICTED: uncharacterized protein LOC10 0.893 0.885 0.604 1e-131
356497824512 PREDICTED: uncharacterized protein LOC10 0.756 0.638 0.658 1e-130
255558294512 conserved hypothetical protein [Ricinus 0.75 0.632 0.688 1e-128
>gi|255552782|ref|XP_002517434.1| conserved hypothetical protein [Ricinus communis] gi|223543445|gb|EEF44976.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  506 bits (1303), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 277/485 (57%), Positives = 337/485 (69%), Gaps = 57/485 (11%)

Query: 1   MGACGSK-----FLSKKKLKS---------KRISKRRVSFNKLDKIDECGKRDARCHSNS 46
           MG C S+      LS KK K+         +RI KRRVS +   + D  G+ D R  SN 
Sbjct: 1   MGGCASRPKGCIGLSSKKKKNGTNKPRIRRRRIIKRRVSSHNFGRPDLSGQTD-RSFSNP 59

Query: 47  STLLASKEFAWFDCCSALDQSEIDDDFYSVHDD----FEDASTLRVASPRDSFNQKD--- 99
           +   +    AW D  S L +SEIDD+FYSVH+D        S L ++SPRD FNQKD   
Sbjct: 60  AFQGSIDAAAWSDAISVL-ESEIDDEFYSVHEDGFSVIGTESVLSISSPRD-FNQKDYYE 117

Query: 100 ---------------QNGDAWNGQ-----------------LPCVASAMSSDDKARVSSP 127
                            GD    Q                 LPC+AS + S +K R  SP
Sbjct: 118 NNTRNEVVKAQVSGNGGGDVNVMQMQQQVEENNCGLLPNICLPCLASTVPSIEKKRSLSP 177

Query: 128 RA-PGAKRKLLSRLSFKFKEGHNNQNSFPPKVLLQRPKAGSSLSFCPLEKKMSNSWSPIE 186
              P ++RK   RLSFK++EGH+    F PK LLQRP AGSSL  CPLEKKM + WSPIE
Sbjct: 178 SGTPSSRRKPSLRLSFKWREGHSTPTFFSPKALLQRPIAGSSLPCCPLEKKMPDCWSPIE 237

Query: 187 PSTFRVRGQNYLRDKKKDFAPNFAAYCPFAADVFLSQRKIDHIARFVDLPVIDSSEELPS 246
           PSTF+VRGQNY RDKKKD APN AA+ PF AD+FLS RKI HIAR+V+LP + +++E+PS
Sbjct: 238 PSTFKVRGQNYFRDKKKDRAPNCAAFYPFGADLFLSPRKIHHIARYVELPTVSATDEVPS 297

Query: 247 ILVVNLQIPLYPAAIFQGENDGEGMNLVLYFKLSESYSKDLPVHFQEHVNRIINDEVERV 306
           +LVVNLQIPLYPA IFQ ENDGEGM+LV+YFKLSE+YSK+LP HF++++NR+INDEVERV
Sbjct: 298 VLVVNLQIPLYPATIFQSENDGEGMSLVMYFKLSENYSKELPSHFRDNINRLINDEVERV 357

Query: 307 KGFPLDTINSFRERLKILSRLVNGEDLHLSTTEKKILNTYNEKPVLSRPQHEFYLGENYF 366
           +GFP+DTI  FRERLKIL RL N ++L L + EKK+LN YNEKPVLSRPQHEFYLGE+YF
Sbjct: 358 RGFPVDTIAPFRERLKILGRLANADELQLGSAEKKLLNAYNEKPVLSRPQHEFYLGESYF 417

Query: 367 EIDLDVHRFSYLSRKTFAAFQDRFKLCKLDFGLTIQENKTENLPENMLCCIRLNEIDYSN 426
           EIDLD+H+FSY+SRK F AFQDR KLC LDFGLTIQ +K E+LPE+MLCC+RLNE+DY+ 
Sbjct: 418 EIDLDMHKFSYISRKGFEAFQDRLKLCVLDFGLTIQGHKAEDLPEHMLCCMRLNELDYAK 477

Query: 427 YRQLG 431
           ++QLG
Sbjct: 478 HQQLG 482




Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087747|emb|CBI35003.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224140901|ref|XP_002323816.1| predicted protein [Populus trichocarpa] gi|118482376|gb|ABK93111.1| unknown [Populus trichocarpa] gi|222866818|gb|EEF03949.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225452618|ref|XP_002276119.1| PREDICTED: uncharacterized protein LOC100266380 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449461897|ref|XP_004148678.1| PREDICTED: uncharacterized protein LOC101209394 [Cucumis sativus] gi|449519689|ref|XP_004166867.1| PREDICTED: uncharacterized protein LOC101231709 [Cucumis sativus] Back     alignment and taxonomy information
>gi|255638564|gb|ACU19589.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356572108|ref|XP_003554212.1| PREDICTED: uncharacterized protein LOC100808949 [Glycine max] Back     alignment and taxonomy information
>gi|356550488|ref|XP_003543619.1| PREDICTED: uncharacterized protein LOC100797844 isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356497824|ref|XP_003517757.1| PREDICTED: uncharacterized protein LOC100787325 [Glycine max] Back     alignment and taxonomy information
>gi|255558294|ref|XP_002520174.1| conserved hypothetical protein [Ricinus communis] gi|223540666|gb|EEF42229.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query432
TAIR|locus:2012848485 AT1G10410 [Arabidopsis thalian 0.745 0.663 0.631 4.2e-111
TAIR|locus:2202877492 CW14 "AT1G59650" [Arabidopsis 0.798 0.701 0.598 7.8e-110
TAIR|locus:2093868513 AT3G29180 "AT3G29180" [Arabido 0.719 0.606 0.528 7.1e-90
TAIR|locus:2175648511 AT5G39430 "AT5G39430" [Arabido 0.724 0.612 0.493 1.2e-83
TAIR|locus:2014819504 AT1G13970 "AT1G13970" [Arabido 0.627 0.537 0.519 8.1e-76
TAIR|locus:2102465733 AT3G54800 [Arabidopsis thalian 0.187 0.110 0.310 4.5e-05
TAIR|locus:2198866313 AT1G06050 "AT1G06050" [Arabido 0.219 0.303 0.271 0.00066
TAIR|locus:2012848 AT1G10410 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1097 (391.2 bits), Expect = 4.2e-111, P = 4.2e-111
 Identities = 204/323 (63%), Positives = 256/323 (79%)

Query:   109 LPCV-ASAMSSDDKARVSSPRAPGAKRKLLSRLSFKFKEGHNNQNSFPPKVLLQRPKAGS 167
             LPC+  + + S DK R  S   P +++K   RLS+K++EGH +   F  K+ L+RP AGS
Sbjct:   158 LPCLNTTTVPSIDKRRSLSSSPPSSRKKSSLRLSYKWREGHASGALFLSKMQLKRPIAGS 217

Query:   168 SLSFCPLEKKMSNSWSPIEPSTFRVRGQNYLRDKKKDFAPNFAAYCPFAADVFLSQRKID 227
              + FCP++KKM + WS I+P++FRVRG+ YLR+KKK+FAP+ AAY PF  DVFLS+ KI 
Sbjct:   218 QVPFCPIDKKMLDCWSTIDPNSFRVRGKTYLREKKKEFAPSHAAYNPFGVDVFLSEHKIH 277

Query:   228 HIARFVDLPVIDSSEELPSILVVNLQIPLYPAAIFQGENDGEGMNLVLYFKLSESYSKDL 287
             H+A++V LPV  +S +LPSILVVN+QIPLYP AIFQGE+DGEGMN+VLYFKLS++YSK+L
Sbjct:   278 HVAQYVKLPVTTTSTKLPSILVVNVQIPLYPTAIFQGESDGEGMNIVLYFKLSDNYSKEL 337

Query:   288 PVHFQEHVNRIINDEVERVKGFPLDTINSFRERLKILSRLVNGEDLHLSTTEKKILNTYN 347
             P+HFQE + R+I+DEVE+VKGFPLDT   FRERLKIL R+ N +DLHLS  EKK++  YN
Sbjct:   338 PLHFQESIRRLIDDEVEKVKGFPLDTTAPFRERLKILGRVANVDDLHLSGPEKKLMQAYN 397

Query:   348 EKPVLSRPQHEFYLGENYFEIDLDVHRFSYLSRKTFAAFQDRFKLCKLDFGLTIQENKTE 407
             EKPVLSRPQHEFYLG+NYFEID+D+HRF Y+SRK F  F DR K+C LD GLTIQ NK E
Sbjct:   398 EKPVLSRPQHEFYLGDNYFEIDIDMHRFGYISRKGFETFIDRLKICVLDVGLTIQGNKPE 457

Query:   408 NLPENMLCCIRLNEIDYSNYRQL 430
              LPE +LCC+RLN ID+ NY QL
Sbjct:   458 ELPEQILCCVRLNGIDFMNYHQL 480




GO:0005634 "nucleus" evidence=ISM
GO:0006865 "amino acid transport" evidence=RCA
TAIR|locus:2202877 CW14 "AT1G59650" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2093868 AT3G29180 "AT3G29180" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2175648 AT5G39430 "AT5G39430" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2014819 AT1G13970 "AT1G13970" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2102465 AT3G54800 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2198866 AT1G06050 "AT1G06050" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
GSVIVG00020834001
SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (370 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query432
pfam07059215 pfam07059, DUF1336, Protein of unknown function (D 3e-75
>gnl|CDD|219281 pfam07059, DUF1336, Protein of unknown function (DUF1336) Back     alignment and domain information
 Score =  233 bits (597), Expect = 3e-75
 Identities = 98/246 (39%), Positives = 128/246 (52%), Gaps = 35/246 (14%)

Query: 182 WSPIEPSTFRVRGQNYLRDKKKDFAPNFAAYCPFAADVFLSQRKIDHIARFVDLPVID-S 240
           WS  +PSTF+VRG+ YL+DKKK  A N   Y     D F S +KIDHIA   DL V   +
Sbjct: 1   WSEPDPSTFKVRGKTYLKDKKKIPAGNPL-YTLIGVDWFKSDKKIDHIANHPDLRVQKAA 59

Query: 241 SEELPSILVVNLQIPLYPAAIFQGENDGEGMNLVLYFKLSESYSKDLPVHFQEHVNRIIN 300
            + LP +L+VN+Q+P            GEG +LVLYF L E   K+L   F   + R ++
Sbjct: 60  KKGLPFVLIVNIQVP-----------GGEGYSLVLYFALEEPVEKELSPAFGSLLRRFVD 108

Query: 301 -DEVERVKGFPLDTINSFRERLKILSRLVNGEDLHLSTTEKKILNTYNEKPVL--SRPQH 357
            DE      F         ERLKI+ R+V G     S   ++++  YNEKP L    PQ 
Sbjct: 109 GDE----DAFR-------NERLKIIPRIVKG-----SWIVRQLV--YNEKPCLVGKAPQC 150

Query: 358 EFYLGENYFEIDLDVHRFSYLSRKTFAAFQDRFKLCKLDFGLTIQENKTENLPENMLCCI 417
            +Y G NY EID+D+   S ++RK    F        LD   TIQ    E LPE +L  +
Sbjct: 151 NYYRGPNYLEIDVDIGS-SSIARKGLELFLGYLTNLVLDLAFTIQGQTEEELPERLLGAV 209

Query: 418 RLNEID 423
           RLN+ID
Sbjct: 210 RLNKID 215


This family represents the C-terminus (approximately 250 residues) of a number of hypothetical plant proteins of unknown function. Length = 215

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 432
PF07059227 DUF1336: Protein of unknown function (DUF1336); In 100.0
PLN00188719 enhanced disease resistance protein (EDR2); Provis 100.0
>PF07059 DUF1336: Protein of unknown function (DUF1336); InterPro: IPR009769 This entry represents the C terminus (approximately 250 residues) of a number of hypothetical plant proteins of unknown function Back     alignment and domain information
Probab=100.00  E-value=2e-76  Score=565.33  Aligned_cols=222  Identities=43%  Similarity=0.745  Sum_probs=209.4

Q ss_pred             cccCCCCCeEEcCCCccCCCccccCCCCCccceeeeeEeeeCcccchhhccCCCcccccCC-CCCeEEEEEEEcCCCccc
Q 013990          182 WSPIEPSTFRVRGQNYLRDKKKDFAPNFAAYCPFAADVFLSQRKIDHIARFVDLPVIDSSE-ELPSILVVNLQIPLYPAA  260 (432)
Q Consensus       182 Ws~p~~s~FkVRG~~Yl~DKkKvpA~~~~l~~lvgvDlF~s~~kidhIa~~~~lp~~~~~~-~~P~vfIVNiQlP~~p~~  260 (432)
                      ||+|++++|+|||+|||+||||+||+++ +|+++|||||+|++|++|||+|++++.+.... +.||+||||||||+||++
T Consensus         1 Ws~p~~~~FkVRG~~Yl~DkkKvpa~~~-l~~lvgvDlf~s~~~~~hia~~~~~~~~~~~~~~~P~~fIVNlqvP~~p~~   79 (227)
T PF07059_consen    1 WSEPDASTFKVRGPNYLKDKKKVPAGPP-LFELVGVDLFKSDKKIDHIARRPSSPVQKALEKGVPFTFIVNLQVPGYPPS   79 (227)
T ss_pred             CCCCCCCEEEEeCCCcccCCCCCcCCCc-ceeeEEEEEEecCCcchhhhhCcCCccccccccCCCcEEEEEEEccCCccc
Confidence            9999999999999999999999999985 99999999999999999999999999877654 589999999999999999


Q ss_pred             ccCCCCCCCCeEEEEEEeeCccccCCCCcchHHHhhhhhhhhhhhhcCCCCCChhhhh-hhcceeeeecCCCcccchhhH
Q 013990          261 IFQGENDGEGMNLVLYFKLSESYSKDLPVHFQEHVNRIINDEVERVKGFPLDTINSFR-ERLKILSRLVNGEDLHLSTTE  339 (432)
Q Consensus       261 ~F~~~~DGeg~SlVlYF~~~e~~~~el~~~f~~l~~rf~~deve~vkgf~~d~~d~fR-~RfKLIp~VvnG~wi~l~~~~  339 (432)
                      +| ++.||+|||+|+||++++++.++.+++|.++++||++++         +.+|+|| +||||||+|+||+|+      
T Consensus        80 ~f-~~~~~~~~s~V~Yf~~~~~~~~~~~~~~~~ll~rF~~gd---------~~~d~frn~RfKlIp~vv~gpwi------  143 (227)
T PF07059_consen   80 MF-GEIDGPGYSLVLYFRMPEPIEDDDSPPFGRLLHRFLNGD---------EVEDAFRNERFKLIPRVVNGPWI------  143 (227)
T ss_pred             cc-cccccCCceEEEEEecCCccccccCchhHHHHHHHHhcC---------ccchhhhhccEEEEEEEcCCchh------
Confidence            99 999999999999999999998888889999999999743         1128899 899999999999999      


Q ss_pred             HHHHhhc-CCeeeeec--CceeeccCCCeEEEEEeccCchHHHHHHHHHhhhccceeEEeeeEeeecCCCCCCccceece
Q 013990          340 KKILNTY-NEKPVLSR--PQHEFYLGENYFEIDLDVHRFSYLSRKTFAAFQDRFKLCKLDFGLTIQENKTENLPENMLCC  416 (432)
Q Consensus       340 r~l~~av-n~KPvLir--~q~~y~~G~nYlEiDVDI~sFS~iAr~~l~lv~g~~k~lvvDmGFvIEGq~eeELPE~LLG~  416 (432)
                        +++++ |+||||+|  ++|+||+|+||||||||||+ |+|||+++++|++|+++|||||||||||+++|||||+||||
T Consensus       144 --vr~~v~~~kP~lig~~~~~~y~~g~~y~E~dvdi~s-s~~a~~~~~~~~~~~~~lvvd~gf~ieg~~~~ELPE~lLg~  220 (227)
T PF07059_consen  144 --VRKAVYNGKPVLIGKKLQHRYFRGPNYLEIDVDIHS-SYIARKVLHLVRGYLKKLVVDMGFVIEGQTEEELPERLLGC  220 (227)
T ss_pred             --hhhhhcCCCceeecCccceEEeeCCCeEEEEEEecc-HHHHHHHHHHHHhhhceEEEEEEEEecCCChhhCchheEeE
Confidence              56666 99999998  69999999999999999999 99999999999999999999999999999999999999999


Q ss_pred             EEecccc
Q 013990          417 IRLNEID  423 (432)
Q Consensus       417 vRLn~iD  423 (432)
                      +||+|||
T Consensus       221 ~Rl~~id  227 (227)
T PF07059_consen  221 VRLNHID  227 (227)
T ss_pred             EEeeecC
Confidence            9999998



>PLN00188 enhanced disease resistance protein (EDR2); Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query432
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-08
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 54.5 bits (130), Expect = 4e-08
 Identities = 65/473 (13%), Positives = 133/473 (28%), Gaps = 142/473 (30%)

Query: 1   MGACGSKFLSKKKLKSKRISKRRVSFN----KLDKIDECGKRDARCHSNSSTLLASKEFA 56
           +   G  +++     S ++ + ++ F      L            C+S  + L   ++  
Sbjct: 158 VLGSGKTWVALDVCLSYKV-QCKMDFKIFWLNL----------KNCNSPETVLEMLQKL- 205

Query: 57  WFDCCSALDQS--EIDDDFYSVHDDFEDASTLRVASPRDSFNQKD-QNG-----DAWNGQ 108
                  +D +     D   ++            A  R     K  +N      +  N +
Sbjct: 206 ----LYQIDPNWTSRSDHSSNIKLRIHSIQ----AELRRLLKSKPYENCLLVLLNVQNAK 257

Query: 109 ------LPC----------VASAMSSDDKARVSS-----PRAPGAKRKLLSR-LSFKFKE 146
                 L C          V   +S+     +S         P   + LL + L  + ++
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317

Query: 147 GHNNQNSFPPKVLLQRPKAGSSLSFCPLEKK-MSNSWSPIEPSTFRVRGQNYLRDKKKDF 205
                   P +VL   P+    LS      +    +W            ++   DK    
Sbjct: 318 -------LPREVLTTNPRR---LSIIAESIRDGLATWDNW---------KHVNCDKLTT- 357

Query: 206 APNFAAYCPFAADVFLSQRK-IDHIARFVDLPVIDSSEELPSILVVNLQIPLYPAAIFQG 264
                       +  L+  +  ++   F  L V   S  +P+IL   L + ++   I   
Sbjct: 358 ----------IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL---LSL-IWFDVIK-- 401

Query: 265 ENDGEGMNLVLYFKLSESYSKDLPVHFQEHVNRIINDEVERVKGFPLDTINSFRERLKIL 324
            +    +N +  + L E   K+  +         I           +         L++ 
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKESTIS--------IPS---------IY--------LELK 436

Query: 325 SRLVNGEDLHLSTTEKKILNTYNEKPVLSRPQHEFYL--GENYFEIDLDVHRFSYLSRKT 382
            +L N   LH     + I++ YN     +    +      + YF        +S++    
Sbjct: 437 VKLENEYALH-----RSIVDHYNIP--KTFDSDDLIPPYLDQYF--------YSHIGHHL 481

Query: 383 FAAFQ----DRFKLCKLDFGLTIQENKTENLPENMLCCIRLNE--IDYSNYRQ 429
                      F++  LDF     E K  +          +         Y+ 
Sbjct: 482 KNIEHPERMTLFRMVFLDFRFL--EQKIRHDSTAWNASGSILNTLQQLKFYKP 532


Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00