Citrus Sinensis ID: 014017

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430--
MASSVFHAPCGAPSIKQLECQKYVGLRPSVTLRFNCVKTKTVTTRRLVVTASKSHDGTTKKLGISDAECEAAVVAGNIPEAPPVPPKPAAPAGTPVVPSLPLSRRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYFALQAARCLCGEKR
cccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccEEEEEEEcccccccccccccccccccccHHHHHHHHHHHccccEEEEccccccccccccccccccccccHHHHHHHHHHHcccEEEEEEccccccccccccccccccccEEcHHHHHHHHHHHHHHHHccccEEccccccccHHHHHHHHHHHccccccccHHHHHHHHccccccccHHcccccccccccccccccccccccHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHccccEEEEEccHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccEEEHHcHHHHHHHHHcccc
ccccccccccccccEEEEcccccEccccccccccccccccccccEEEEEEccHccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHccHHHHHHcccccccHHHEEEEEEEEccccccEcccccccEEEcHHHHHHHHHHHHHHccccEEEEEEcccHHHcEcccHHHHccccHHHHHHHHHHHHccccEEEEEEcccccEcccccccEcccccEcHHHHHHHHHHHHHHHHHccccEEEEccccccHHHHHHHHHHHccccccEEEEEEEEEccHHHHHHHHHHccHHHHcccccccccHHHHHcccHHHHHHHHHHHHccccEEEEEccHHHHHHHHHHHHHHcccEEEEEcHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccEEEcccHHHHHHHHHHccc
massvfhapcgapsikqlecqkyvglrpsvtlrfncvktktvtTRRLVVTaskshdgttkklgiSDAECEAAVvagnipeappvppkpaapagtpvvpslplsrrprrnrkspamrasfqetnlspanfvyplfihegeedtpigampgcyrlgwrhGLVQEVAKARdvgvnsvvlfpkvpdalksptgdeayndnglvprTIWLlkdrypdlviytdvaldpyssdghdgivredgvimnDETVHQLCKQAVSQAragadvvspsdmmdGRVGAIRAALDAEGFQHVSIMSYTAKYassfygpfrealdsnprfgdkktYVIRVIELYANYREALVEAQadesegadillvkpglpyldVIRLLRdkyplpiaayqvsgeysmikaggalkMIDEQRVMMESLMCLRRAGADIILTYFALQAARCLCGEKR
massvfhapcgapsikqlecQKYVGlrpsvtlrfncvktktvttrrlvvtaskshdgttkklgiSDAECEAAVVAGNIPEAPPVPPKpaapagtpvvpslplsrrprrnrkspamrasfqetnlspaNFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFpkvpdalksptgdeayndngLVPRTIWLLKDRYPDLVIYTDvaldpyssdGHDGIVREDGVIMNDETVHQLCKQAVSQARAgadvvspsdmMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREaldsnprfgdkKTYVIRVIELYANYREALVEAQAdesegadillvkPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYFALQAARCLCGEKR
MASSVFHAPCGAPSIKQLECQKYVGLRPSVTLRFNCvktktvttrrlvvtASKSHDGTTKKLGISDAECEAAVVAGNIpeappvppkpaapagtpvvpslplsrrprrNRKSPAMRASFQETNLSPANFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYFALQAARCLCGEKR
*******APCGAPSIKQLECQKYVGLRPSVTLRFNCVKTKTVTTRRLVVTA************I**AECEAAVV***************************************************PANFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKV**********************IWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQA*************DGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYFALQAARCLC****
********PCGAPSIKQLECQKYVGLRP***********************************************************************LPLSRRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYFALQAARCLCG***
********PCGAPSIKQLECQKYVGLRPSVTLRFNCVKTKTVTTRRLVVTASKSHDGTTKKLGISDAECEAAVVAGNIPEAPPVP*********PVVPSLPLS*************ASFQETNLSPANFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQ*********DVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYFALQAARCLCGEKR
****VFHAPCGAPSIKQLECQKYVGLRPSVTLRFNCVKTKTVTTRRLVVTAS****************C*A*****N*********************S*PLSRRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYFALQAARCLCGE**
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MASSVFHAPCGAPSIKQLECQKYVGLRPSVTLRFNCVKTKTVTTRRLVVTASKSHDGTTKKLGISDAECEAAVVAGNIPEAPPVPPKPAAPAGTPVVPSLPLSRRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYFALQAARCLCGEKR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query432 2.2.26 [Sep-21-2011]
Q9SFH9430 Delta-aminolevulinic acid yes no 0.988 0.993 0.809 0.0
P43210412 Delta-aminolevulinic acid yes no 0.946 0.992 0.793 0.0
P24493433 Delta-aminolevulinic acid N/A no 0.981 0.979 0.755 0.0
P30124398 Delta-aminolevulinic acid N/A no 0.842 0.914 0.875 1e-178
Q5Z8V9426 Delta-aminolevulinic acid yes no 0.981 0.995 0.714 1e-174
Q42836428 Delta-aminolevulinic acid N/A no 0.976 0.985 0.7 1e-170
P45623417 Delta-aminolevulinic acid N/A no 0.833 0.863 0.766 1e-158
Q43058430 Delta-aminolevulinic acid N/A no 0.828 0.832 0.755 1e-144
Q42682390 Delta-aminolevulinic acid N/A no 0.789 0.874 0.593 1e-114
Q8KCJ0328 Delta-aminolevulinic acid yes no 0.736 0.969 0.519 1e-83
>sp|Q9SFH9|HEM2_ARATH Delta-aminolevulinic acid dehydratase, chloroplastic OS=Arabidopsis thaliana GN=HEMB PE=1 SV=1 Back     alignment and function desciption
 Score =  692 bits (1785), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/435 (80%), Positives = 392/435 (90%), Gaps = 8/435 (1%)

Query: 1   MASS-VFHAPCGAPSIKQLECQKYVGLRPSVTLRFNCVKTKTVTTRR--LVVTASKSHDG 57
           MA++ +F+A C  PS + ++C+ Y+GLR +V+ + +   ++  T++R  LVV AS+S +G
Sbjct: 1   MATTPIFNASCSFPSTRGIDCKSYIGLRSNVS-KVSVASSRIATSQRRNLVVRASESGNG 59

Query: 58  TTKKLGISDAECEAAVVAGNIPEAPPVPPKPAAPAGTPVVPSLPLSRRPRRNRKSPAMRA 117
             KKLG+SDAECEAAV AGN+PEAPPVPPKPAAP GTP++  L LSRRPRRNR SP  RA
Sbjct: 60  HAKKLGMSDAECEAAVAAGNVPEAPPVPPKPAAPVGTPIIKPLNLSRRPRRNRASPVTRA 119

Query: 118 SFQETNLSPANFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLF 177
           +FQET++SPANFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKAR VGVNS+VLF
Sbjct: 120 AFQETDISPANFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARAVGVNSIVLF 179

Query: 178 PKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237
           PKVP+ALK+ TGDEAYNDNGLVPRTI LLKD+YPDL+IYTDVALDPYSSDGHDGIVREDG
Sbjct: 180 PKVPEALKNSTGDEAYNDNGLVPRTIRLLKDKYPDLIIYTDVALDPYSSDGHDGIVREDG 239

Query: 238 VIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKY 297
           VIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIR+ALDAEGFQ+VSIMSYTAKY
Sbjct: 240 VIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRSALDAEGFQNVSIMSYTAKY 299

Query: 298 ASSFYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLP 357
           ASSFYGPFREALDSNPRFGDKKTY +      ANYREAL+EA+ DE+EGADILLVKPGLP
Sbjct: 300 ASSFYGPFREALDSNPRFGDKKTYQMNP----ANYREALIEAREDEAEGADILLVKPGLP 355

Query: 358 YLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILT 417
           YLD+IRLLRDK PLPIAAYQVSGEYSMIKAGG LKMIDE++VMMESLMCLRRAGADIILT
Sbjct: 356 YLDIIRLLRDKSPLPIAAYQVSGEYSMIKAGGVLKMIDEEKVMMESLMCLRRAGADIILT 415

Query: 418 YFALQAARCLCGEKR 432
           YFALQAA CLCGEKR
Sbjct: 416 YFALQAATCLCGEKR 430
Catalyzes an early step in the biosynthesis of tetrapyrroles. Binds two molecules of 5-aminolevulinate per subunit, each at a distinct site, and catalyzes their condensation to form porphobilinogen.
Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 2EC: .EC: 1EC: .EC: 2EC: 4
>sp|P43210|HEM2_SOYBN Delta-aminolevulinic acid dehydratase, chloroplastic OS=Glycine max GN=HEMB PE=2 SV=1 Back     alignment and function description
>sp|P24493|HEM2_SPIOL Delta-aminolevulinic acid dehydratase, chloroplastic OS=Spinacia oleracea GN=HEMB PE=1 SV=2 Back     alignment and function description
>sp|P30124|HEM2_PEA Delta-aminolevulinic acid dehydratase, chloroplastic (Fragment) OS=Pisum sativum GN=HEMB PE=1 SV=1 Back     alignment and function description
>sp|Q5Z8V9|HEM2_ORYSJ Delta-aminolevulinic acid dehydratase, chloroplastic OS=Oryza sativa subsp. japonica GN=HEMB PE=2 SV=1 Back     alignment and function description
>sp|Q42836|HEM2_HORVU Delta-aminolevulinic acid dehydratase, chloroplastic OS=Hordeum vulgare GN=HEMB PE=2 SV=1 Back     alignment and function description
>sp|P45623|HEM2_SELMA Delta-aminolevulinic acid dehydratase, chloroplastic OS=Selaginella martensii GN=HEMB PE=3 SV=1 Back     alignment and function description
>sp|Q43058|HEM2_PHYPA Delta-aminolevulinic acid dehydratase, chloroplastic OS=Physcomitrella patens subsp. patens GN=HEMB PE=2 SV=1 Back     alignment and function description
>sp|Q42682|HEM2_CHLRE Delta-aminolevulinic acid dehydratase, chloroplastic OS=Chlamydomonas reinhardtii GN=HEMB PE=2 SV=1 Back     alignment and function description
>sp|Q8KCJ0|HEM2_CHLTE Delta-aminolevulinic acid dehydratase OS=Chlorobium tepidum (strain ATCC 49652 / DSM 12025 / TLS) GN=hemB PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query432
255545372432 porphobilinogen synthase, putative [Rici 0.990 0.990 0.866 0.0
224063068430 predicted protein [Populus trichocarpa] 0.983 0.988 0.842 0.0
297838745430 hypothetical protein ARALYDRAFT_339208 [ 0.988 0.993 0.813 0.0
15222443430 delta-aminolevulinic acid dehydratase [A 0.988 0.993 0.809 0.0
449441790430 PREDICTED: delta-aminolevulinic acid deh 0.990 0.995 0.836 0.0
225459583430 PREDICTED: delta-aminolevulinic acid deh 0.990 0.995 0.829 0.0
13183730426 aminolevulinate dehydratase [Raphanus sa 0.983 0.997 0.812 0.0
1097877430 aminolevulinate dehydratase 0.976 0.981 0.807 0.0
351721201412 delta-aminolevulinic acid dehydratase, c 0.946 0.992 0.793 0.0
1170215433 RecName: Full=Delta-aminolevulinic acid 0.981 0.979 0.755 1e-180
>gi|255545372|ref|XP_002513746.1| porphobilinogen synthase, putative [Ricinus communis] gi|223546832|gb|EEF48329.1| porphobilinogen synthase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  726 bits (1873), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/436 (86%), Positives = 401/436 (91%), Gaps = 8/436 (1%)

Query: 1   MASSVFH-APCGAPSIKQLECQKYVGLRPSV-TLRFNC--VKTKTVTTRRLVVTASKSHD 56
           MAS++F+ A C  P+ K L+C+ YV L+P+V +LRFNC     K    R L+V AS+ HD
Sbjct: 1   MASTIFNNAACTVPARKGLDCKNYVALKPTVHSLRFNCGTNSVKVCPKRVLMVRASERHD 60

Query: 57  GTTKKLGISDAECEAAVVAGNIPEAPPVPPKPAAPAGTPVVPSLPLSRRPRRNRKSPAMR 116
           G  KKLG++DAECEAAVV+GN+PEAPPVPPKPAAPAGTPVVPSLPLSRRPRRNRKSPAMR
Sbjct: 61  GPIKKLGLTDAECEAAVVSGNVPEAPPVPPKPAAPAGTPVVPSLPLSRRPRRNRKSPAMR 120

Query: 117 ASFQETNLSPANFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVL 176
           ASFQETN+SP+NFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLV+EVAKARDVGVNSVVL
Sbjct: 121 ASFQETNISPSNFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVEEVAKARDVGVNSVVL 180

Query: 177 FPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVRED 236
           FPKVPDALKSPTGDEAYNDNGLVPRTI LLKD+YPDLVIYTDVALDPYSSDGHDGIVRED
Sbjct: 181 FPKVPDALKSPTGDEAYNDNGLVPRTIRLLKDKYPDLVIYTDVALDPYSSDGHDGIVRED 240

Query: 237 GVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAK 296
           GVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAK
Sbjct: 241 GVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAK 300

Query: 297 YASSFYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGL 356
           YASSFYGPFREALDSNPRFGDKKTY +      ANYREAL+EA  DESEGADILLVKPGL
Sbjct: 301 YASSFYGPFREALDSNPRFGDKKTYQMNP----ANYREALIEAHEDESEGADILLVKPGL 356

Query: 357 PYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIIL 416
           PYLD+IRLLRDK PLPIAAYQVSGEYSMIKAGG LKMIDE+RVMMESLMCLRRAGADIIL
Sbjct: 357 PYLDIIRLLRDKSPLPIAAYQVSGEYSMIKAGGVLKMIDEERVMMESLMCLRRAGADIIL 416

Query: 417 TYFALQAARCLCGEKR 432
           TYFALQAARCLCGEKR
Sbjct: 417 TYFALQAARCLCGEKR 432

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224063068|ref|XP_002300981.1| predicted protein [Populus trichocarpa] gi|222842707|gb|EEE80254.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297838745|ref|XP_002887254.1| hypothetical protein ARALYDRAFT_339208 [Arabidopsis lyrata subsp. lyrata] gi|297333095|gb|EFH63513.1| hypothetical protein ARALYDRAFT_339208 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15222443|ref|NP_177132.1| delta-aminolevulinic acid dehydratase [Arabidopsis thaliana] gi|145327197|ref|NP_001077800.1| delta-aminolevulinic acid dehydratase [Arabidopsis thaliana] gi|12229846|sp|Q9SFH9.1|HEM2_ARATH RecName: Full=Delta-aminolevulinic acid dehydratase, chloroplastic; Short=ALADH; AltName: Full=Porphobilinogen synthase; Flags: Precursor gi|11935205|gb|AAG42018.1|AF327428_1 putative aminolevulinate dehydratase [Arabidopsis thaliana] gi|12325198|gb|AAG52549.1|AC013289_16 putative aminolevulinate dehydratase; 38705-36189 [Arabidopsis thaliana] gi|13605645|gb|AAK32816.1|AF361803_1 At1g69740/T6C23_6 [Arabidopsis thaliana] gi|16323332|gb|AAL15379.1| At1g69740/T6C23_6 [Arabidopsis thaliana] gi|19698815|gb|AAL91143.1| putative aminolevulinate dehydratase [Arabidopsis thaliana] gi|21280939|gb|AAM44989.1| putative aminolevulinate dehydratase [Arabidopsis thaliana] gi|21539421|gb|AAM53263.1| putative aminolevulinate dehydratase [Arabidopsis thaliana] gi|22136066|gb|AAM91111.1| putative aminolevulinate dehydratase [Arabidopsis thaliana] gi|332196848|gb|AEE34969.1| delta-aminolevulinic acid dehydratase [Arabidopsis thaliana] gi|332196849|gb|AEE34970.1| delta-aminolevulinic acid dehydratase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449441790|ref|XP_004138665.1| PREDICTED: delta-aminolevulinic acid dehydratase, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225459583|ref|XP_002285863.1| PREDICTED: delta-aminolevulinic acid dehydratase, chloroplastic [Vitis vinifera] gi|147778245|emb|CAN65137.1| hypothetical protein VITISV_011727 [Vitis vinifera] gi|302141802|emb|CBI19005.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|13183730|gb|AAK15323.1|AF332195_1 aminolevulinate dehydratase [Raphanus sativus] Back     alignment and taxonomy information
>gi|1097877|prf||2114378A aminolevulinate dehydratase Back     alignment and taxonomy information
>gi|351721201|ref|NP_001238737.1| delta-aminolevulinic acid dehydratase, chloroplastic [Glycine max] gi|1170214|sp|P43210.1|HEM2_SOYBN RecName: Full=Delta-aminolevulinic acid dehydratase, chloroplastic; Short=ALADH; AltName: Full=Porphobilinogen synthase; Flags: Precursor gi|468000|gb|AAA18342.1| delta-aminolevulinic acid dehydratase [Glycine max] Back     alignment and taxonomy information
>gi|1170215|sp|P24493.2|HEM2_SPIOL RecName: Full=Delta-aminolevulinic acid dehydratase, chloroplastic; Short=ALAD; Short=ALADH; AltName: Full=Porphobilinogen synthase; Flags: Precursor gi|805062|emb|CAA40974.1| porphobilinogen synthase [Spinacia oleracea] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query432
TAIR|locus:2205035430 HEMB1 [Arabidopsis thaliana (t 0.740 0.744 0.895 1.5e-168
TAIR|locus:2823624406 hemb2 [Arabidopsis thaliana (t 0.726 0.773 0.722 1.7e-126
TIGR_CMR|GSU_0135325 GSU_0135 "delta-aminolevulinic 0.717 0.953 0.489 2.1e-75
TIGR_CMR|BA_4694329 BA_4694 "delta-aminolevulinic 0.715 0.939 0.487 8.4e-74
TIGR_CMR|SPO_2076332 SPO_2076 "porphobilinogen synt 0.726 0.945 0.475 6.1e-71
TIGR_CMR|CHY_1210325 CHY_1210 "porphobilinogen synt 0.717 0.953 0.454 1.6e-70
UNIPROTKB|Q9KVN6347 VC_0105 "Delta-aminolevulinic 0.724 0.902 0.470 3.8e-69
TIGR_CMR|VC_0105347 VC_0105 "delta-aminolevulinic 0.724 0.902 0.470 3.8e-69
TIGR_CMR|SO_4208336 SO_4208 "delta-aminolevulinic 0.724 0.931 0.461 1.9e-67
UNIPROTKB|P0ACB2324 hemB [Escherichia coli K-12 (t 0.708 0.944 0.468 1.1e-66
TAIR|locus:2205035 HEMB1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1507 (535.5 bits), Expect = 1.5e-168, Sum P(2) = 1.5e-168
 Identities = 290/324 (89%), Positives = 307/324 (94%)

Query:   109 NRKSPAMRASFQETNLSPANFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARD 168
             NR SP  RA+FQET++SPANFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKAR 
Sbjct:   111 NRASPVTRAAFQETDISPANFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARA 170

Query:   169 VGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDG 228
             VGVNS+VLFPKVP+ALK+ TGDEAYNDNGLVPRTI LLKD+YPDL+IYTDVALDPYSSDG
Sbjct:   171 VGVNSIVLFPKVPEALKNSTGDEAYNDNGLVPRTIRLLKDKYPDLIIYTDVALDPYSSDG 230

Query:   229 HDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHV 288
             HDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIR+ALDAEGFQ+V
Sbjct:   231 HDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRSALDAEGFQNV 290

Query:   289 SIMSYTAKYASSFYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGAD 348
             SIMSYTAKYASSFYGPFREALDSNPRFGDKKTY +      ANYREAL+EA+ DE+EGAD
Sbjct:   291 SIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNP----ANYREALIEAREDEAEGAD 346

Query:   349 ILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLR 408
             ILLVKPGLPYLD+IRLLRDK PLPIAAYQVSGEYSMIKAGG LKMIDE++VMMESLMCLR
Sbjct:   347 ILLVKPGLPYLDIIRLLRDKSPLPIAAYQVSGEYSMIKAGGVLKMIDEEKVMMESLMCLR 406

Query:   409 RAGADIILTYFALQAARCLCGEKR 432
             RAGADIILTYFALQAA CLCGEKR
Sbjct:   407 RAGADIILTYFALQAATCLCGEKR 430
GO:0003824 "catalytic activity" evidence=IEA
GO:0004655 "porphobilinogen synthase activity" evidence=IEA;ISS
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0033014 "tetrapyrrole biosynthetic process" evidence=IEA
GO:0046872 "metal ion binding" evidence=IEA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0006098 "pentose-phosphate shunt" evidence=RCA
GO:0006364 "rRNA processing" evidence=RCA
GO:0015995 "chlorophyll biosynthetic process" evidence=RCA
GO:0006779 "porphyrin-containing compound biosynthetic process" evidence=TAS
TAIR|locus:2823624 hemb2 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_0135 GSU_0135 "delta-aminolevulinic acid dehydratase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|BA_4694 BA_4694 "delta-aminolevulinic acid dehydratase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_2076 SPO_2076 "porphobilinogen synthase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_1210 CHY_1210 "porphobilinogen synthase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KVN6 VC_0105 "Delta-aminolevulinic acid dehydratase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_0105 VC_0105 "delta-aminolevulinic acid dehydratase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TIGR_CMR|SO_4208 SO_4208 "delta-aminolevulinic acid dehydratase" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
UNIPROTKB|P0ACB2 hemB [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P30124HEM2_PEA4, ., 2, ., 1, ., 2, 40.8750.84250.9145N/Ano
Q42836HEM2_HORVU4, ., 2, ., 1, ., 2, 40.70.97680.9859N/Ano
P45623HEM2_SELMA4, ., 2, ., 1, ., 2, 40.76640.83330.8633N/Ano
P43210HEM2_SOYBN4, ., 2, ., 1, ., 2, 40.79310.94670.9927yesno
P24493HEM2_SPIOL4, ., 2, ., 1, ., 2, 40.75570.98140.9792N/Ano
Q5Z8V9HEM2_ORYSJ4, ., 2, ., 1, ., 2, 40.71460.98140.9953yesno
Q8KCJ0HEM2_CHLTE4, ., 2, ., 1, ., 2, 40.51960.73610.9695yesno
Q59334HEM2_CHLP84, ., 2, ., 1, ., 2, 40.51360.74070.9756yesno
Q43058HEM2_PHYPA4, ., 2, ., 1, ., 2, 40.75540.82870.8325N/Ano
Q9SFH9HEM2_ARATH4, ., 2, ., 1, ., 2, 40.80910.98840.9930yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.10.998
4th Layer4.2.1.240.994

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00020758
hypothetical protein (430 aa)
(Populus trichocarpa)
Predicted Functional Partners:
eugene3.00150799
glutamate-1-semialdehyde 2,1-aminomutase (EC-5.4.3.8) (479 aa)
• •• •• 0.995
fgenesh4_pm.C_LG_VII000271
hydroxymethylbilane synthase (EC-2.5.1.61) (363 aa)
• •• •• 0.990
fgenesh4_pg.C_LG_V000312
hydroxymethylbilane synthase (EC-2.5.1.61) (364 aa)
• •• •• 0.990
gw1.148.3.1
uroporphyrin-III C-methyltransferase (EC-2.1.1.107) (328 aa)
• •   • 0.843
estExt_Genewise1_v1.C_LG_II0707
glutamyl-tRNA reductase (EC-1.2.1.70) (469 aa)
• •   • 0.837
gw1.I.4290.1
glutamyl-tRNA reductase (EC-1.2.1.70) (471 aa)
• •   • 0.836
gw1.182.88.1
uroporphyrinogen decarboxylase (EC-4.1.1.37) (357 aa)
• ••  • 0.802
gw1.IX.2784.1
glutamyl-tRNA reductase (EC-1.2.1.70) (503 aa)
• •   • 0.789
estExt_fgenesh4_pg.C_LG_XIX0326
SubName- Full=Putative uncharacterized protein; (403 aa)
• ••  • 0.752
gw1.VI.1271.1
ferrochelatase (EC-4.99.1.1); Catalyzes the ferrous insertion into protoporphyrin IX (By simila [...] (381 aa)
•     • 0.652

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query432
cd04823320 cd04823, ALAD_PBGS_aspartate_rich, Porphobilinogen 0.0
smart01004321 smart01004, ALAD, Delta-aminolevulinic acid dehydr 0.0
pfam00490322 pfam00490, ALAD, Delta-aminolevulinic acid dehydra 0.0
PRK09283323 PRK09283, PRK09283, delta-aminolevulinic acid dehy 0.0
COG0113330 COG0113, HemB, Delta-aminolevulinic acid dehydrata 1e-176
cd00384314 cd00384, ALAD_PBGS, Porphobilinogen synthase (PBGS 1e-162
PRK13384322 PRK13384, PRK13384, delta-aminolevulinic acid dehy 1e-115
cd04824320 cd04824, eu_ALAD_PBGS_cysteine_rich, Porphobilinog 1e-98
>gnl|CDD|240127 cd04823, ALAD_PBGS_aspartate_rich, Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll Back     alignment and domain information 
 Score =  579 bits (1495), Expect = 0.0
 Identities = 191/326 (58%), Positives = 241/326 (73%), Gaps = 7/326 (2%)

Query: 104 RRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEE-DTPIGAMPGCYRLGWRHGLVQE 162
            RPRRNR++ A+R   +ET LSP + + PLF+HEGE    PI +MPG +RL     L++E
Sbjct: 1   TRPRRNRRTDALRRLVRETTLSPDDLILPLFVHEGENQREPIPSMPGVFRLSIDE-LLKE 59

Query: 163 VAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALD 222
             +A D+G+ +V LFP  P  LKS  G EAYN + LV R I  +K+ +P+L I TDVALD
Sbjct: 60  AEEAVDLGIPAVALFPVTPPELKSEDGSEAYNPDNLVCRAIRAIKEAFPELGIITDVALD 119

Query: 223 PYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDA 282
           PY+S GHDGIVR DG I+NDETV  LCKQA+ QA AGAD+V+PSDMMDGR+GAIR ALDA
Sbjct: 120 PYTSHGHDGIVR-DGGILNDETVEVLCKQALVQAEAGADIVAPSDMMDGRIGAIREALDA 178

Query: 283 EGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQAD 342
           EGF +VSI+SY AKYAS+FYGPFR+AL S PR GDKKTY +      AN REAL E   D
Sbjct: 179 EGFTNVSILSYAAKYASAFYGPFRDALGSAPRKGDKKTYQMD----PANSREALREVALD 234

Query: 343 ESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMME 402
            +EGAD+++VKPG+PYLD+IR ++D++ +P  AYQVSGEY+M+KA      +DE +VM+E
Sbjct: 235 IAEGADMVMVKPGMPYLDIIRRVKDEFGVPTFAYQVSGEYAMLKAAAQNGWLDEDKVMLE 294

Query: 403 SLMCLRRAGADIILTYFALQAARCLC 428
           SL+  +RAGAD ILTYFA +AA  L 
Sbjct: 295 SLLAFKRAGADGILTYFAKEAAEWLR 320

This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesium binding sequence RX~164DX~65EXXXD and are activated by magnesium and/or potassium, but not by zinc. PBGSs_aspartate_rich are found in some bacterial species and photosynthetic organisms such as vascular plants, mosses and algae, but not in archaea. Length = 320
>gnl|CDD|214968 smart01004, ALAD, Delta-aminolevulinic acid dehydratase Back     alignment and domain information
>gnl|CDD|215945 pfam00490, ALAD, Delta-aminolevulinic acid dehydratase Back     alignment and domain information
>gnl|CDD|236450 PRK09283, PRK09283, delta-aminolevulinic acid dehydratase; Validated Back     alignment and domain information
>gnl|CDD|223191 COG0113, HemB, Delta-aminolevulinic acid dehydratase [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|238226 cd00384, ALAD_PBGS, Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll Back     alignment and domain information
>gnl|CDD|172020 PRK13384, PRK13384, delta-aminolevulinic acid dehydratase; Provisional Back     alignment and domain information
>gnl|CDD|240128 cd04824, eu_ALAD_PBGS_cysteine_rich, Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 432
COG0113330 HemB Delta-aminolevulinic acid dehydratase [Coenzy 100.0
cd04823320 ALAD_PBGS_aspartate_rich Porphobilinogen synthase 100.0
PF00490324 ALAD: Delta-aminolevulinic acid dehydratase; Inter 100.0
PRK09283323 delta-aminolevulinic acid dehydratase; Validated 100.0
cd00384314 ALAD_PBGS Porphobilinogen synthase (PBGS), which i 100.0
PRK13384322 delta-aminolevulinic acid dehydratase; Provisional 100.0
cd04824320 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthas 100.0
KOG2794340 consensus Delta-aminolevulinic acid dehydratase [C 100.0
TIGR03128206 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the 96.88
cd08205367 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase l 96.73
PRK07028 430 bifunctional hexulose-6-phosphate synthase/ribonuc 96.73
cd08210364 RLP_RrRLP Ribulose bisphosphate carboxylase like p 96.31
cd00377243 ICL_PEPM Members of the ICL/PEPM enzyme family cat 96.17
PRK05718212 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog 96.12
cd06556240 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup 95.69
cd00945201 Aldolase_Class_I Class I aldolases. The class I al 95.18
cd00452190 KDPG_aldolase KDPG and KHG aldolase. This family b 95.0
cd04726202 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl 94.87
PRK08645 612 bifunctional homocysteine S-methyltransferase/5,10 94.78
PLN02489335 homocysteine S-methyltransferase 94.69
cd00945201 Aldolase_Class_I Class I aldolases. The class I al 94.49
cd04727283 pdxS PdxS is a subunit of the pyridoxal 5'-phospha 94.35
PRK07226267 fructose-bisphosphate aldolase; Provisional 93.68
PRK07807479 inosine 5-monophosphate dehydrogenase; Validated 93.6
TIGR00343287 pyridoxal 5'-phosphate synthase, synthase subunit 93.35
PF02574305 S-methyl_trans: Homocysteine S-methyltransferase; 93.06
cd04729219 NanE N-acetylmannosamine-6-phosphate epimerase (Na 92.99
cd02803327 OYE_like_FMN_family Old yellow enzyme (OYE)-like F 92.96
PRK13307391 bifunctional formaldehyde-activating enzyme/3-hexu 92.71
PRK01130221 N-acetylmannosamine-6-phosphate 2-epimerase; Provi 92.0
cd02933338 OYE_like_FMN Old yellow enzyme (OYE)-like FMN bind 91.75
PRK09485304 mmuM homocysteine methyltransferase; Provisional 90.88
cd06557254 KPHMT-like Ketopantoate hydroxymethyltransferase ( 90.84
PRK04147 293 N-acetylneuraminate lyase; Provisional 90.82
TIGR02319294 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos 90.77
TIGR00259257 thylakoid_BtpA membrane complex biogenesis protein 90.62
PF03437254 BtpA: BtpA family; InterPro: IPR005137 Photosystem 90.59
PRK00311264 panB 3-methyl-2-oxobutanoate hydroxymethyltransfer 90.31
cd08601256 GDPD_SaGlpQ_like Glycerophosphodiester phosphodies 90.1
PRK14040 593 oxaloacetate decarboxylase; Provisional 90.03
PRK08444353 hypothetical protein; Provisional 89.83
PRK07188352 nicotinate phosphoribosyltransferase; Provisional 89.67
cd08207406 RLP_NonPhot Ribulose bisphosphate carboxylase like 89.62
cd00408281 DHDPS-like Dihydrodipicolinate synthase family. A 89.34
PTZ00170228 D-ribulose-5-phosphate 3-epimerase; Provisional 89.33
TIGR03332407 salvage_mtnW 2,3-diketo-5-methylthiopentyl-1-phosp 89.23
cd08209391 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopent 89.1
cd02932336 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN 89.03
PRK11320292 prpB 2-methylisocitrate lyase; Provisional 88.96
cd02931382 ER_like_FMN Enoate reductase (ER)-like FMN-binding 88.83
PRK07534336 methionine synthase I; Validated 88.83
cd00739 257 DHPS DHPS subgroup of Pterin binding enzymes. DHPS 88.36
TIGR02313 294 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic ac 88.09
COG1060370 ThiH Thiamine biosynthesis enzyme ThiH and related 88.08
PRK05927350 hypothetical protein; Provisional 87.95
cd00950284 DHDPS Dihydrodipicolinate synthase (DHDPS) is a ke 87.78
PRK09549407 mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate eno 87.69
TIGR03249 296 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-deh 87.56
PRK03620 303 5-dehydro-4-deoxyglucarate dehydratase; Provisiona 87.31
cd00954288 NAL N-Acetylneuraminic acid aldolase, also called 87.04
cd08148366 RuBisCO_large Ribulose bisphosphate carboxylase la 86.5
TIGR00674285 dapA dihydrodipicolinate synthase. Dihydrodipicoli 86.03
PRK11613 282 folP dihydropteroate synthase; Provisional 85.94
TIGR03551343 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflav 85.8
cd04733338 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN 85.61
TIGR03326412 rubisco_III ribulose bisphosphate carboxylase, typ 85.58
COG5016 472 Pyruvate/oxaloacetate carboxyltransferase [Energy 85.58
PRK12999 1146 pyruvate carboxylase; Reviewed 85.51
PRK00043212 thiE thiamine-phosphate pyrophosphorylase; Reviewe 85.34
TIGR01303475 IMP_DH_rel_1 IMP dehydrogenase family protein. Thi 85.17
PF13714238 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB 84.92
cd08208424 RLP_Photo Ribulose bisphosphate carboxylase like p 84.92
cd00958235 DhnA Class I fructose-1,6-bisphosphate (FBP) aldol 84.7
TIGR00222263 panB 3-methyl-2-oxobutanoate hydroxymethyltransfer 84.62
PRK09613469 thiH thiamine biosynthesis protein ThiH; Reviewed 84.18
PRK09282 592 pyruvate carboxylase subunit B; Validated 84.12
PRK14042 596 pyruvate carboxylase subunit B; Provisional 84.03
cd00377243 ICL_PEPM Members of the ICL/PEPM enzyme family cat 83.44
cd06557254 KPHMT-like Ketopantoate hydroxymethyltransferase ( 83.12
PRK12330 499 oxaloacetate decarboxylase; Provisional 83.12
PRK15063428 isocitrate lyase; Provisional 83.02
PF13714238 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB 82.92
cd08213 412 RuBisCO_large_III Ribulose bisphosphate carboxylas 82.23
PRK12331448 oxaloacetate decarboxylase; Provisional 82.08
TIGR02351366 thiH thiazole biosynthesis protein ThiH. Members t 81.96
TIGR02317285 prpB methylisocitrate lyase. Members of this famil 81.96
TIGR00423309 radical SAM domain protein, CofH subfamily. This p 81.88
cd02930353 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin 81.56
PRK05458326 guanosine 5'-monophosphate oxidoreductase; Provisi 80.62
PRK03170 292 dihydrodipicolinate synthase; Provisional 80.61
cd08206 414 RuBisCO_large_I_II_III Ribulose bisphosphate carbo 80.58
PRK14040 593 oxaloacetate decarboxylase; Provisional 80.27
TIGR01496 257 DHPS dihydropteroate synthase. This model represen 80.17
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism] Back     alignment and domain information 
Probab=100.00  E-value=2.8e-154  Score=1127.66  Aligned_cols=325  Identities=54%  Similarity=0.886  Sum_probs=317.8

Q ss_pred             CCCCCCCCCCCCChhhHhhhccCCCCCCCceeeEEEeeCCC-CcccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEee
Q 014017          100 LPLSRRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEE-DTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFP  178 (432)
Q Consensus       100 ~~~~~R~RRlR~~~~~R~l~~Et~Ls~~~LI~PlFV~eg~~-~~~I~sMPGv~r~si~~~l~~~v~~~~~~GI~sv~LFg  178 (432)
                      +.+.+|+||+|+++++|+|++||+|+++||||||||.||++ +++|+|||||||||++ .|++++++++++||++|+|||
T Consensus         4 ~~~~~R~RRlRk~~~~R~lv~Et~L~~~dLI~PiFV~eg~~~~~~I~SMPgv~r~s~d-~l~~~~~~~~~lGi~av~LFg   82 (330)
T COG0113           4 TFPFRRPRRLRKSPALRRLVRETRLTPNDLIYPIFVVEGENIKEEIPSMPGVYRYSLD-RLVEEAEELVDLGIPAVILFG   82 (330)
T ss_pred             cchhhhhhhccCCHHHHHHHHhcCCCHHHeeEeEEEecCCCCccccCCCCCceeccHH-HHHHHHHHHHhcCCCEEEEeC
Confidence            45568999999999999999999999999999999999985 7999999999999997 699999999999999999999


Q ss_pred             cCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHc
Q 014017          179 KVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARA  258 (432)
Q Consensus       179 vi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~A  258 (432)
                      ++.++.||+.||+|||+||+||||+|.||+.||||+|||||||||||+||||||++++|.|+||+||++|+||||+||+|
T Consensus        83 vp~~~~Kd~~gs~A~~~~givqravr~ik~~~p~l~iitDvcLceyT~HGHcGil~~~~~V~ND~Tle~l~k~Avs~AeA  162 (330)
T COG0113          83 VPDDSKKDETGSEAYDPDGIVQRAVRAIKEAFPELVVITDVCLCEYTDHGHCGILDDGGYVDNDETLEILAKQAVSQAEA  162 (330)
T ss_pred             CCcccccCcccccccCCCChHHHHHHHHHHhCCCeEEEeeecccCCcCCCccccccCCCeecchHHHHHHHHHHHHHHHc
Confidence            86566899999999999999999999999999999999999999999999999998777999999999999999999999


Q ss_pred             CCCeecCCCCCCchHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCCCCCCCcccccccccCCCCCHHHHHHH
Q 014017          259 GADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVE  338 (432)
Q Consensus       259 GADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre  338 (432)
                      |||||||||||||||++||++||++||+||+|||||+||||+||||||||++|+|+||||||||||    |+|.+|||||
T Consensus       163 GAdivAPSdMMDGrV~aIR~aLd~ag~~~v~IMsYsaKyASafYGPFRdAa~Sap~~gdrktYQmD----paN~~EAlrE  238 (330)
T COG0113         163 GADIVAPSDMMDGRVGAIREALDEAGFIDVPIMSYSAKYASAFYGPFRDAAGSAPKFGDRKTYQMD----PANRREALRE  238 (330)
T ss_pred             CCCeecccccccchHHHHHHHHHHcCCCcceeeehhHHHhhhccccHHHHhhcccccCCcceeccC----CcCHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999    9999999999


Q ss_pred             HHhchhcCCcEEEEcCCCchhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEeehh
Q 014017          339 AQADESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTY  418 (432)
Q Consensus       339 ~~~Di~EGAD~lMVKPal~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~IiTY  418 (432)
                      +++|++|||||||||||++|||||+++|++|++|++||||||||+|||||+++||||++++++|||+||||||||+||||
T Consensus       239 ~~lD~~EGAD~lMVKPal~YLDIi~~vk~~~~lP~~AYqVSGEYaMikAAa~nGwide~~~vlEsL~~~kRAGAd~IiTY  318 (330)
T COG0113         239 IELDIEEGADILMVKPALPYLDIIRRVKEEFNLPVAAYQVSGEYAMIKAAAQNGWIDEEKVVLESLTSIKRAGADLIITY  318 (330)
T ss_pred             HHhhHhcCCcEEEEcCCchHHHHHHHHHHhcCCCeEEEecchHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCEEEee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHhc
Q 014017          419 FALQAARCLCG  429 (432)
Q Consensus       419 fA~~~a~wL~~  429 (432)
                      ||+|+|+||++
T Consensus       319 fA~e~a~~L~~  329 (330)
T COG0113         319 FAKEVAEWLKE  329 (330)
T ss_pred             cHHHHHHHhhc
Confidence            99999999975

>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll Back     alignment and domain information
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway [] Back     alignment and domain information
>PRK09283 delta-aminolevulinic acid dehydratase; Validated Back     alignment and domain information
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll Back     alignment and domain information
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional Back     alignment and domain information
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll Back     alignment and domain information
>KOG2794 consensus Delta-aminolevulinic acid dehydratase [Coenzyme transport and metabolism] Back     alignment and domain information
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase Back     alignment and domain information
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV Back     alignment and domain information
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated Back     alignment and domain information
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R Back     alignment and domain information
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage Back     alignment and domain information
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional Back     alignment and domain information
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds Back     alignment and domain information
>cd00945 Aldolase_Class_I Class I aldolases Back     alignment and domain information
>cd00452 KDPG_aldolase KDPG and KHG aldolase Back     alignment and domain information
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS) Back     alignment and domain information
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed Back     alignment and domain information
>PLN02489 homocysteine S-methyltransferase Back     alignment and domain information
>cd00945 Aldolase_Class_I Class I aldolases Back     alignment and domain information
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa Back     alignment and domain information
>PRK07226 fructose-bisphosphate aldolase; Provisional Back     alignment and domain information
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated Back     alignment and domain information
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1 Back     alignment and domain information
>PF02574 S-methyl_trans: Homocysteine S-methyltransferase; InterPro: IPR003726 S-methylmethionine: homocysteine methyltransferase 2 Back     alignment and domain information
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate Back     alignment and domain information
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain Back     alignment and domain information
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional Back     alignment and domain information
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional Back     alignment and domain information
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain Back     alignment and domain information
>PRK09485 mmuM homocysteine methyltransferase; Provisional Back     alignment and domain information
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway Back     alignment and domain information
>PRK04147 N-acetylneuraminate lyase; Provisional Back     alignment and domain information
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase Back     alignment and domain information
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family Back     alignment and domain information
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane Back     alignment and domain information
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed Back     alignment and domain information
>cd08601 GDPD_SaGlpQ_like Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins Back     alignment and domain information
>PRK14040 oxaloacetate decarboxylase; Provisional Back     alignment and domain information
>PRK08444 hypothetical protein; Provisional Back     alignment and domain information
>PRK07188 nicotinate phosphoribosyltransferase; Provisional Back     alignment and domain information
>cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria Back     alignment and domain information
>cd00408 DHDPS-like Dihydrodipicolinate synthase family Back     alignment and domain information
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional Back     alignment and domain information
>TIGR03332 salvage_mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase Back     alignment and domain information
>cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase Back     alignment and domain information
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain Back     alignment and domain information
>PRK11320 prpB 2-methylisocitrate lyase; Provisional Back     alignment and domain information
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain Back     alignment and domain information
>PRK07534 methionine synthase I; Validated Back     alignment and domain information
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes Back     alignment and domain information
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase Back     alignment and domain information
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only] Back     alignment and domain information
>PRK05927 hypothetical protein; Provisional Back     alignment and domain information
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis Back     alignment and domain information
>PRK09549 mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; Reviewed Back     alignment and domain information
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase Back     alignment and domain information
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional Back     alignment and domain information
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid) Back     alignment and domain information
>cd08148 RuBisCO_large Ribulose bisphosphate carboxylase large chain Back     alignment and domain information
>TIGR00674 dapA dihydrodipicolinate synthase Back     alignment and domain information
>PRK11613 folP dihydropteroate synthase; Provisional Back     alignment and domain information
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit Back     alignment and domain information
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2 Back     alignment and domain information
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III Back     alignment and domain information
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion] Back     alignment and domain information
>PRK12999 pyruvate carboxylase; Reviewed Back     alignment and domain information
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed Back     alignment and domain information
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein Back     alignment and domain information
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B Back     alignment and domain information
>cd08208 RLP_Photo Ribulose bisphosphate carboxylase like proteins from phototrophic bacteria Back     alignment and domain information
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea Back     alignment and domain information
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase Back     alignment and domain information
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed Back     alignment and domain information
>PRK09282 pyruvate carboxylase subunit B; Validated Back     alignment and domain information
>PRK14042 pyruvate carboxylase subunit B; Provisional Back     alignment and domain information
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage Back     alignment and domain information
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway Back     alignment and domain information
>PRK12330 oxaloacetate decarboxylase; Provisional Back     alignment and domain information
>PRK15063 isocitrate lyase; Provisional Back     alignment and domain information
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B Back     alignment and domain information
>cd08213 RuBisCO_large_III Ribulose bisphosphate carboxylase large chain, Form III Back     alignment and domain information
>PRK12331 oxaloacetate decarboxylase; Provisional Back     alignment and domain information
>TIGR02351 thiH thiazole biosynthesis protein ThiH Back     alignment and domain information
>TIGR02317 prpB methylisocitrate lyase Back     alignment and domain information
>TIGR00423 radical SAM domain protein, CofH subfamily Back     alignment and domain information
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain Back     alignment and domain information
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional Back     alignment and domain information
>PRK03170 dihydrodipicolinate synthase; Provisional Back     alignment and domain information
>cd08206 RuBisCO_large_I_II_III Ribulose bisphosphate carboxylase large chain, Form I,II,III Back     alignment and domain information
>PRK14040 oxaloacetate decarboxylase; Provisional Back     alignment and domain information
>TIGR01496 DHPS dihydropteroate synthase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query432
3obk_A356 Crystal Structure Of Delta-Aminolevulinic Acid Dehy 2e-87
1w1z_A328 Structure Of The Plant Like 5-Amino Laevulinic Acid 5e-84
1b4k_A337 High Resolution Crystal Structure Of A Mg2-Dependen 9e-70
1b4e_A323 X-Ray Structure Of 5-Aminolevulinic Acid Dehydratas 1e-69
1l6s_A323 Crystal Structure Of Porphobilinogen Synthase Compl 3e-69
1gzg_A337 Complex Of A Mg2-Dependent Porphobilinogen Synthase 5e-69
1i8j_A323 Crystal Structure Of Porphobilinogen Synthase Compl 6e-69
2c15_A337 5-(4-Carboxy-2-Oxo-Butoxy)-4-Oxo-Pentanoic Acid Aci 8e-69
1w54_A337 Stepwise Introduction Of A Zinc Binding Site Into P 2e-68
1w56_A337 Stepwise Introduction Of Zinc Binding Site Into Por 8e-68
1w5m_A337 Stepwise Introduction Of Zinc Binding Site Into Por 8e-68
1w5n_A337 Stepwise Introduction Of Zinc Binding Site Into Por 3e-67
1w5o_A337 Stepwise Introduction Of Zinc Binding Site Into Por 1e-66
1w5p_A337 Stepwise Introduction Of Zinc Binding Site Into Por 1e-65
1w5q_A337 Stepwise Introduction Of Zinc Binding Site Into Por 2e-65
2c14_A337 5-(4-Carboxy-2-Oxo-Butylamino)-4-Oxo-Pentanoic Acid 2e-63
2c13_A337 5-Hydroxy-Levulinic Acid Bound To Porphobilinogen S 8e-63
2z1b_A330 Crystal Structure Of 5-Aminolevulinic Acid Dehydrat 1e-61
1pv8_A330 Crystal Structure Of A Low Activity F12l Mutant Of 2e-59
1e51_A330 Crystal Structure Of Native Human Erythrocyte 5- Am 2e-59
2z0i_A330 Crystal Structure Of 5-Aminolevulinic Acid Dehydrat 2e-57
1ylv_A342 Schiff-Base Complex Of Yeast 5-Aminolaevulinic Acid 6e-46
1eb3_A340 Yeast 5-Aminolaevulinic Acid Dehydratase 4,7-Dioxos 2e-45
1qnv_A342 Yeast 5-Aminolaevulinic Acid Dehydratase Lead (Pb) 3e-45
1h7o_A341 Schiff-Base Complex Of Yeast 5-Aminolaevulinic Acid 3e-45
1aw5_A340 5-Aminolevulinate Dehydratase From Saccharomyces Ce 2e-43
>pdb|3OBK|A Chain A, Crystal Structure Of Delta-Aminolevulinic Acid Dehydratase (Porphobilinogen Synthase) From Toxoplasma Gondii Me49 In Complex With The Reaction Product Porphobilinogen Length = 356 Back     alignment and structure 
Iteration: 1

 Score =  319 bits (818), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 176/326 (53%), Positives = 232/326 (71%), Gaps = 7/326 (2%)
Query: 109 NRKSPAMRASFQETNLSPANFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARD 168
           NRK+ A+R   QE  + P++ +YPLF+H+ E   PI +MPG  RL     L++EV +AR 
Sbjct: 26  NRKNRAVRQLVQENLVKPSSLIYPLFVHDEETSVPIPSMPGQSRLSM-EDLLKEVGEARS 84
Query: 169 VGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDG 228
            G+ + +LFPKV D LKS   +E+YN +GL+PR I  LK+ +PD+++  DVALDPYSS G
Sbjct: 85  YGIKAFMLFPKVDDELKSVMAEESYNPDGLLPRAIMALKEAFPDVLLLADVALDPYSSMG 144
Query: 229 HDGIVRED-GVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQH 287
           HDG+V E  G I+ND TVHQLCKQA++ ARAGAD+V PSDMMDGRV AIR +LD EG   
Sbjct: 145 HDGVVDEQSGKIVNDLTVHQLCKQAITLARAGADMVCPSDMMDGRVSAIRESLDMEGCTD 204
Query: 288 VSIMSYTAKYASSFYGPFREALDSNPRFG-DKKTYVIRVIELYANYREALVEAQADESEG 346
            SI++Y+ KYASSFYGPFR+ALDS+   G DKKTY +      +N REA  EA+AD SEG
Sbjct: 205 TSILAYSCKYASSFYGPFRDALDSHMVGGTDKKTYQMDP----SNSREAEREAEADASEG 260
Query: 347 ADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMC 406
           AD+L+VKPGLPYLDV+  +R+K  LP+ AY VSGEY+M+KA      I E+  ++E L  
Sbjct: 261 ADMLMVKPGLPYLDVLAKIREKSKLPMVAYHVSGEYAMLKAAAEKGYISEKDTVLEVLKS 320
Query: 407 LRRAGADIILTYFALQAARCLCGEKR 432
            RRAGAD + TY+A +AA+ +  + +
Sbjct: 321 FRRAGADAVATYYAKEAAKWMVEDMK 346
>pdb|1W1Z|A Chain A, Structure Of The Plant Like 5-Amino Laevulinic Acid Dehydratase From Chlorobium Vibrioforme Length = 328 Back     alignment and structure
>pdb|1B4K|A Chain A, High Resolution Crystal Structure Of A Mg2-Dependent 5-Aminolevulinic Acid Dehydratase Length = 337 Back     alignment and structure
>pdb|1B4E|A Chain A, X-Ray Structure Of 5-Aminolevulinic Acid Dehydratase Complexed With The Inhibitor Levulinic Acid Length = 323 Back     alignment and structure
>pdb|1L6S|A Chain A, Crystal Structure Of Porphobilinogen Synthase Complexed With The Inhibitor 4,7-Dioxosebacic Acid Length = 323 Back     alignment and structure
>pdb|1GZG|A Chain A, Complex Of A Mg2-Dependent Porphobilinogen Synthase From Pseudomonas Aeruginosa (Mutant D139n) With 5-Fluorolevulinic Acid Length = 337 Back     alignment and structure
>pdb|1I8J|A Chain A, Crystal Structure Of Porphobilinogen Synthase Complexed With The Inhibitor 4,7-Dioxosebacic Acid Length = 323 Back     alignment and structure
>pdb|2C15|A Chain A, 5-(4-Carboxy-2-Oxo-Butoxy)-4-Oxo-Pentanoic Acid Acid Bound To Porphobilinogen Synthase From Pseudomonas Aeruginosa Length = 337 Back     alignment and structure
>pdb|1W54|A Chain A, Stepwise Introduction Of A Zinc Binding Site Into Porphobilinogen Synthase From Pseudomonas Aeruginosa (mutation D139c) Length = 337 Back     alignment and structure
>pdb|1W56|A Chain A, Stepwise Introduction Of Zinc Binding Site Into Porphobilinogen Synthase Of Pseudomonas Aeruginosa (Mutations A129c And D131c) Length = 337 Back     alignment and structure
>pdb|1W5M|A Chain A, Stepwise Introduction Of Zinc Binding Site Into Porphobilinogen Synthase Of Pseudomonas Aeruginosa (Mutations A129c And D139c) Length = 337 Back     alignment and structure
>pdb|1W5N|A Chain A, Stepwise Introduction Of Zinc Binding Site Into Porphobilinogen Synthase Of Pseudomonas Aeruginosa (Mutations D131c And D139c) Length = 337 Back     alignment and structure
>pdb|1W5O|A Chain A, Stepwise Introduction Of Zinc Binding Site Into Porphobilinogen Synthase Of Pseudomonas Aeruginosa (Mutations A129c, D131c And D139c) Length = 337 Back     alignment and structure
>pdb|1W5P|A Chain A, Stepwise Introduction Of Zinc Binding Site Into Porphobilinogen Synthase Of Pseudomonas Aeruginosa (Mutations A129c, D131c, D139c, P132e) Length = 337 Back     alignment and structure
>pdb|1W5Q|A Chain A, Stepwise Introduction Of Zinc Binding Site Into Porphobilinogen Synthase Of Pseudomonas Aeruginosa (Mutations A129c, D131c, D139c, P132e, K229r) Length = 337 Back     alignment and structure
>pdb|2C14|A Chain A, 5-(4-Carboxy-2-Oxo-Butylamino)-4-Oxo-Pentanoic Acid Acid Bound To Porphobilinogen Synthase From Pseudomonas Aeruginosa Length = 337 Back     alignment and structure
>pdb|2C13|A Chain A, 5-Hydroxy-Levulinic Acid Bound To Porphobilinogen Synthase From Pseudomonas Aeruginosa Length = 337 Back     alignment and structure
>pdb|2Z1B|A Chain A, Crystal Structure Of 5-Aminolevulinic Acid Dehydratase (Alad) From Mus Musculs Length = 330 Back     alignment and structure
>pdb|1PV8|A Chain A, Crystal Structure Of A Low Activity F12l Mutant Of Human Porphobilinogen Synthase Length = 330 Back     alignment and structure
>pdb|1E51|A Chain A, Crystal Structure Of Native Human Erythrocyte 5- Aminolaevulinic Acid Dehydratase Length = 330 Back     alignment and structure
>pdb|2Z0I|A Chain A, Crystal Structure Of 5-Aminolevulinic Acid Dehydratase (Alad) From Mus Musculus Length = 330 Back     alignment and structure
>pdb|1YLV|A Chain A, Schiff-Base Complex Of Yeast 5-Aminolaevulinic Acid Dehydratase With Laevulinic Acid Length = 342 Back     alignment and structure
>pdb|1EB3|A Chain A, Yeast 5-Aminolaevulinic Acid Dehydratase 4,7-Dioxosebacic Acid Complex Length = 340 Back     alignment and structure
>pdb|1QNV|A Chain A, Yeast 5-Aminolaevulinic Acid Dehydratase Lead (Pb) Complex Length = 342 Back     alignment and structure
>pdb|1H7O|A Chain A, Schiff-Base Complex Of Yeast 5-Aminolaevulinic Acid Dehydratase With 5-Aminolaevulinic Acid At 1.7 A Resolution Length = 341 Back     alignment and structure
>pdb|1AW5|A Chain A, 5-Aminolevulinate Dehydratase From Saccharomyces Cerevisiae Length = 340 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query432
3obk_A356 Delta-aminolevulinic acid dehydratase; ssgcid, str 0.0
1w1z_A328 Delta-aminolevulinic acid dehydratase; synthase, t 0.0
1w5q_A337 Delta-aminolevulinic acid dehydratase; synthase, e 0.0
1l6s_A323 Porphobilinogen synthase; dehydratase, lyase; HET: 0.0
1pv8_A330 Delta-aminolevulinic acid dehydratase; porphobilin 0.0
1h7n_A342 5-aminolaevulinic acid dehydratase; lyase, aldolas 1e-174
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-04
>3obk_A Delta-aminolevulinic acid dehydratase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, lyase; HET: PBG; 2.50A {Toxoplasma gondii ME49} Length = 356 Back     alignment and structure
 Score =  562 bits (1452), Expect = 0.0
 Identities = 182/351 (51%), Positives = 242/351 (68%), Gaps = 7/351 (1%)

Query: 84  VPPKPAAPAGTPVVPSLPLSRRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEEDTP 143
           + P+            LP+  RPRRNRK+ A+R   QE  + P++ +YPLF+H+ E   P
Sbjct: 1   MTPRGPLDNNNYGEVWLPIQARPRRNRKNRAVRQLVQENLVKPSSLIYPLFVHDEETSVP 60

Query: 144 IGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTI 203
           I +MPG  RL     L++EV +AR  G+ + +LFPKV D LKS   +E+YN +GL+PR I
Sbjct: 61  IPSMPGQSRLSMED-LLKEVGEARSYGIKAFMLFPKVDDELKSVMAEESYNPDGLLPRAI 119

Query: 204 WLLKDRYPDLVIYTDVALDPYSSDGHDGIVR-EDGVIMNDETVHQLCKQAVSQARAGADV 262
             LK+ +PD+++  DVALDPYSS GHDG+V  + G I+ND TVHQLCKQA++ ARAGAD+
Sbjct: 120 MALKEAFPDVLLLADVALDPYSSMGHDGVVDEQSGKIVNDLTVHQLCKQAITLARAGADM 179

Query: 263 VSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFG-DKKTY 321
           V PSDMMDGRV AIR +LD EG    SI++Y+ KYASSFYGPFR+ALDS+   G DKKTY
Sbjct: 180 VCPSDMMDGRVSAIRESLDMEGCTDTSILAYSCKYASSFYGPFRDALDSHMVGGTDKKTY 239

Query: 322 VIRVIELYANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGE 381
            +      +N REA  EA+AD SEGAD+L+VKPGLPYLDV+  +R+K  LP+ AY VSGE
Sbjct: 240 QMD----PSNSREAEREAEADASEGADMLMVKPGLPYLDVLAKIREKSKLPMVAYHVSGE 295

Query: 382 YSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYFALQAARCLCGEKR 432
           Y+M+KA      I E+  ++E L   RRAGAD + TY+A +AA+ +  + +
Sbjct: 296 YAMLKAAAEKGYISEKDTVLEVLKSFRRAGADAVATYYAKEAAKWMVEDMK 346
>1w1z_A Delta-aminolevulinic acid dehydratase; synthase, tetrapyrrole biosynthesis, ALAD, porphyrin biosynt heme biosynthesis, lyase; 2.6A {Prosthecochloris vibrioformis} SCOP: c.1.10.3 PDB: 2c1h_A* Length = 328 Back     alignment and structure
>1w5q_A Delta-aminolevulinic acid dehydratase; synthase, evolution, metalloenzyme, porphobilinogen synthase, protein engineering,; 1.4A {Pseudomonas aeruginosa} PDB: 1w5p_A* 1w5o_A 1w5n_A 1w56_A 1w5m_A 1w54_A 1gzg_A* 1b4k_A 2woq_A* 2c14_A* 2c16_A* 2c19_A* 2c15_A* 2c18_A* 2c13_A* Length = 337 Back     alignment and structure
>1l6s_A Porphobilinogen synthase; dehydratase, lyase; HET: CME DSB; 1.70A {Escherichia coli} SCOP: c.1.10.3 PDB: 1i8j_A* 1l6y_A* 1b4e_A Length = 323 Back     alignment and structure
>1pv8_A Delta-aminolevulinic acid dehydratase; porphobilinogen synthase, tetrapyrrole biosynthesis, reactio intermediate, lyase; HET: PB1; 2.20A {Homo sapiens} SCOP: c.1.10.3 PDB: 1e51_A* 2z0i_A 2z1b_A Length = 330 Back     alignment and structure
>1h7n_A 5-aminolaevulinic acid dehydratase; lyase, aldolase, TIM barrel, tetrapyrrole synthesis; HET: SHF; 1.6A {Saccharomyces cerevisiae} SCOP: c.1.10.3 PDB: 1h7p_A* 1h7r_A* 1ohl_A* 1qml_A 1qnv_A 1w31_A* 1h7o_A* 1eb3_A* 1gjp_A* 1ylv_A* 1aw5_A Length = 342 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query432
1w5q_A337 Delta-aminolevulinic acid dehydratase; synthase, e 100.0
3obk_A356 Delta-aminolevulinic acid dehydratase; ssgcid, str 100.0
1w1z_A328 Delta-aminolevulinic acid dehydratase; synthase, t 100.0
1l6s_A323 Porphobilinogen synthase; dehydratase, lyase; HET: 100.0
1h7n_A342 5-aminolaevulinic acid dehydratase; lyase, aldolas 100.0
1pv8_A330 Delta-aminolevulinic acid dehydratase; porphobilin 100.0
3ajx_A207 3-hexulose-6-phosphate synthase; HPS, OMPDC supraf 96.23
1vhc_A224 Putative KHG/KDPG aldolase; structural genomics, u 95.78
1wbh_A214 KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} 95.4
1qop_A268 Tryptophan synthase alpha chain; lyase, carbon-oxy 95.29
1mxs_A225 KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a 95.19
1y0e_A223 Putative N-acetylmannosamine-6-phosphate 2-epimer; 95.17
3f4w_A211 Putative hexulose 6 phosphate synthase; humps, mal 94.84
1wa3_A205 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, 94.73
1rd5_A262 Tryptophan synthase alpha chain, chloroplast; hydr 94.5
4e38_A232 Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho 94.08
3nav_A271 Tryptophan synthase alpha chain; alpha subunit, st 93.98
3eol_A433 Isocitrate lyase; seattle structural center for in 93.34
2yzr_A 330 Pyridoxal biosynthesis lyase PDXS; redox protein, 93.22
2ekc_A262 AQ_1548, tryptophan synthase alpha chain; structur 93.0
3lg3_A435 Isocitrate lyase; conserved, CD, proteomics eviden 92.6
2qiw_A255 PEP phosphonomutase; structural genomics, joint ce 92.53
3q58_A229 N-acetylmannosamine-6-phosphate 2-epimerase; TIM b 91.44
3lab_A217 Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) 91.39
1f8m_A429 Isocitrate lyase, ICL; alpha-beta barrel, helix-sw 91.33
1o66_A275 3-methyl-2-oxobutanoate hydroxymethyltransferase; 91.21
3i4e_A439 Isocitrate lyase; structural genomics, seattle str 91.17
1vzw_A 244 Phosphoribosyl isomerase A; histidine biosynthesis 90.68
3igs_A232 N-acetylmannosamine-6-phosphate 2-epimerase 2; ene 90.65
3vnd_A267 TSA, tryptophan synthase alpha chain; psychrophili 90.59
2v82_A212 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l 90.43
2yw3_A207 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox 90.36
1vzw_A244 Phosphoribosyl isomerase A; histidine biosynthesis 90.16
1to3_A304 Putative aldolase YIHT; beta-alpha barrel, structu 89.17
2ze3_A275 DFA0005; organic waste LEFT-OVER decomposition, al 89.01
3fa4_A302 2,3-dimethylmalate lyase; alpha/beta barrel, helix 88.71
1s2w_A295 Phosphoenolpyruvate phosphomutase; phosphonopyruva 88.64
2y88_A244 Phosphoribosyl isomerase A; aromatic amino acid bi 88.47
1oy0_A281 Ketopantoate hydroxymethyltransferase; domain swap 88.46
3na8_A 315 Putative dihydrodipicolinate synthetase; lyase; HE 88.14
2nv1_A305 Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-b 87.73
1lt8_A406 Betaine-homocysteine methyltransferase; homocystei 87.72
3si9_A 315 DHDPS, dihydrodipicolinate synthase; structural ge 87.47
2ojp_A 292 DHDPS, dihydrodipicolinate synthase; dimer, lysine 87.44
1m3u_A264 3-methyl-2-oxobutanoate hydroxymethyltransferase; 87.23
3lye_A307 Oxaloacetate acetyl hydrolase; (alpha/beta)8 barre 86.98
2y88_A 244 Phosphoribosyl isomerase A; aromatic amino acid bi 86.88
3cpr_A304 Dihydrodipicolinate synthetase; (beta/alpha)8-barr 86.64
1geq_A248 Tryptophan synthase alpha-subunit; hyperthermophIl 86.41
2hjp_A290 Phosphonopyruvate hydrolase; phosporus-Ca cleavage 86.07
3eul_A152 Possible nitrate/nitrite response transcriptional 85.93
1ujp_A 271 Tryptophan synthase alpha chain; riken structural 85.34
1zlp_A318 PSR132, petal death protein; TIM-barrel, helix swa 85.17
2wkj_A 303 N-acetylneuraminate lyase; directed evolution, sia 84.85
1f6k_A 293 N-acetylneuraminate lyase; beta barrel; 1.60A {Hae 84.81
3nav_A271 Tryptophan synthase alpha chain; alpha subunit, st 84.45
1q7z_A 566 5-methyltetrahydrofolate S-homocysteine methyltran 83.92
2w6r_A266 Imidazole glycerol phosphate synthase subunit HISF 83.9
1kbi_A 511 Cytochrome B2, L-LCR; flavocytochrome B2, electron 83.87
3f6p_A120 Transcriptional regulatory protein YYCF; unphospho 83.7
3vav_A275 3-methyl-2-oxobutanoate hydroxymethyltransferase; 83.69
3ctl_A231 D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p 83.23
1yxy_A234 Putative N-acetylmannosamine-6-phosphate 2-epimer; 83.14
3vav_A275 3-methyl-2-oxobutanoate hydroxymethyltransferase; 82.96
1q7z_A 566 5-methyltetrahydrofolate S-homocysteine methyltran 82.71
1oy0_A281 Ketopantoate hydroxymethyltransferase; domain swap 82.6
2jfq_A286 Glutamate racemase; cell WALL, isomerase, cell sha 82.45
1zuw_A272 Glutamate racemase 1; (R)-glutamate, peptidoglycan 82.34
3eoo_A298 Methylisocitrate lyase; seattle structural genomic 82.12
3ih1_A305 Methylisocitrate lyase; alpha-beta structure, TIM- 81.52
2dgd_A223 223AA long hypothetical arylmalonate decarboxylas; 81.04
3o07_A291 Pyridoxine biosynthesis protein SNZ1; (beta/alpha) 80.89
2gzm_A267 Glutamate racemase; enzyme, isomerase; HET: DGL; 1 80.73
>1w5q_A Delta-aminolevulinic acid dehydratase; synthase, evolution, metalloenzyme, porphobilinogen synthase, protein engineering,; 1.4A {Pseudomonas aeruginosa} PDB: 1w5p_A* 1w5o_A 1w5n_A 1w56_A 1w5m_A 1w54_A 1gzg_A* 1b4k_A 2woq_A* 2c14_A* 2c16_A* 2c19_A* 2c15_A* 2c18_A* 2c13_A* Back     alignment and structure
Probab=100.00  E-value=6e-157  Score=1154.65  Aligned_cols=331  Identities=44%  Similarity=0.720  Sum_probs=313.4

Q ss_pred             CCCCCcCCCCCCCCCCCCCCChhhHhhhccCCCCCCCceeeEEEeeCCC-CcccCCCCCceeechhhhHHHHHHHHHHcC
Q 014017           92 AGTPVVPSLPLSRRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEE-DTPIGAMPGCYRLGWRHGLVQEVAKARDVG  170 (432)
Q Consensus        92 ~g~p~~~~~~~~~R~RRlR~~~~~R~l~~Et~Ls~~~LI~PlFV~eg~~-~~~I~sMPGv~r~si~~~l~~~v~~~~~~G  170 (432)
                      .|||.+.|++. +|+||||+|+++|+|++||+|+++||||||||+||++ ++||+|||||||||+| .|++++++++++|
T Consensus         2 ~~tp~~~~~p~-~R~RRlR~~~~~R~lv~Et~L~~~dLI~PlFV~eg~~~~~~I~SMPGv~r~sid-~l~~~~~~~~~lG   79 (337)
T 1w5q_A            2 SFTPANRAYPY-TRLRRNRRDDFSRRLVRENVLTVDDLILPVFVLDGVNQRESIPSMPGVERLSID-QLLIEAEEWVALG   79 (337)
T ss_dssp             ----CCCCTTT-CCTTTTTSSHHHHHHHCCCCCCGGGEEEEEEEESSSSCEEECTTSTTCEEEEHH-HHHHHHHHHHHTT
T ss_pred             CCCccCCCCCC-CCCCcCCCChHHHHHHhcCCCCHHHceeeEEEecCCCCccccCCCCCceeeCHH-HHHHHHHHHHHCC
Confidence            48999999987 7999999999999999999999999999999999986 6899999999999997 6999999999999


Q ss_pred             CCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHH
Q 014017          171 VNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCK  250 (432)
Q Consensus       171 I~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g~IdND~Tl~~Lak  250 (432)
                      |++|+|||++|+++||+.||+|||+||++|||||+||++||||+|||||||||||+||||||++++|.|+||+||++|+|
T Consensus        80 i~~v~LFgv~~~~~KD~~gs~A~~~~g~v~rair~iK~~~pdl~vitDvcLc~YT~HGHcGil~~~g~V~ND~Tl~~L~k  159 (337)
T 1w5q_A           80 IPALALFPVTPVEKKSLDAAEAYNPEGIAQRATRALRERFPELGIITDVCLCEFTTHGQCGILDDDGYVLNDVSIDVLVR  159 (337)
T ss_dssp             CCEEEEEECCCGGGCBSSCGGGGCTTSHHHHHHHHHHHHCTTSEEEEEECSTTTBTTCCSSCBCTTSCBCHHHHHHHHHH
T ss_pred             CCEEEEecCCCcccCCcccCccCCCCChHHHHHHHHHHHCCCeEEEEeeecccCCCCCcceeeCCCCcCccHHHHHHHHH
Confidence            99999999878777999999999999999999999999999999999999999999999999976899999999999999


Q ss_pred             HHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCCCCC--CCcccccccccCC
Q 014017          251 QAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRF--GDKKTYVIRVIEL  328 (432)
Q Consensus       251 ~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~~--gDRktYQmd~~~~  328 (432)
                      |||+||+||||||||||||||||++||++||++||+||+|||||+||||+||||||||++|+|+|  |||||||||    
T Consensus       160 ~Als~A~AGADiVAPSdMMDGrV~aIR~aLd~~G~~~v~ImsYsaKyASafYGPFRdAa~Sap~f~~GDrktYQmd----  235 (337)
T 1w5q_A          160 QALSHAEAGAQVVAPSDMMDGRIGAIREALESAGHTNVRVMAYSAKYASAYYGPFRDAVGSASNLGKGNRATYQMD----  235 (337)
T ss_dssp             HHHHHHHTTCSEEEECSCCTTHHHHHHHHHHHTTCTTCEEEEEEEEBCCGGGHHHHHC----------CGGGTSBC----
T ss_pred             HHHHHHHcCCCeEecccccccHHHHHHHHHHHCCCCCceeehhHHHHHHHHHHHHHHHhcCCcccCCCCccccCCC----
Confidence            99999999999999999999999999999999999999999999999999999999999999999  999999999    


Q ss_pred             CCCHHHHHHHHHhchhcCCcEEEEcCCCchhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHH
Q 014017          329 YANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLR  408 (432)
Q Consensus       329 p~N~~EAlre~~~Di~EGAD~lMVKPal~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ik  408 (432)
                      |+|++|||||+++|++||||||||||||+|||||+++|++|++||+||||||||||||||+++||+| +++++|+|++||
T Consensus       236 paN~~EAlrE~~~Di~EGAD~vMVKPal~YLDIir~vk~~~~~PvaaYqVSGEYAMikaAa~~GwiD-~~~v~Esl~~~k  314 (337)
T 1w5q_A          236 PANSDEALHEVAADLAEGADMVMVKPGMPYLDIVRRVKDEFRAPTFVYQVSGEYAMHMGAIQNGWLA-ESVILESLTAFK  314 (337)
T ss_dssp             TTCSHHHHHHHHHHHHTTCSEEEEESCGGGHHHHHHHHHHHCSCEEEEECHHHHHHHHHHHHTTSSC-TTHHHHHHHHHH
T ss_pred             CCChHHHHHHHHhhHHhCCCEEEEcCCCchHHHHHHHHHhcCCCEEEEEcCcHHHHHHHHHHcCCcc-HHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999 999999999999


Q ss_pred             HcCccEeehhcHHHHHHHHhc
Q 014017          409 RAGADIILTYFALQAARCLCG  429 (432)
Q Consensus       409 RAGAd~IiTYfA~~~a~wL~~  429 (432)
                      |||||+||||||+|+|+||++
T Consensus       315 RAGAd~IiTYfA~~~a~~L~~  335 (337)
T 1w5q_A          315 RAGADGILTYFAKQAAEQLRR  335 (337)
T ss_dssp             HHTCSEEEETTHHHHHHHHHC
T ss_pred             hcCCCEEeeecHHHHHHHHhc
Confidence            999999999999999999986
>3obk_A Delta-aminolevulinic acid dehydratase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, lyase; HET: PBG; 2.50A {Toxoplasma gondii ME49} Back     alignment and structure
>1w1z_A Delta-aminolevulinic acid dehydratase; synthase, tetrapyrrole biosynthesis, ALAD, porphyrin biosynt heme biosynthesis, lyase; 2.6A {Prosthecochloris vibrioformis} SCOP: c.1.10.3 PDB: 2c1h_A* Back     alignment and structure
>1l6s_A Porphobilinogen synthase; dehydratase, lyase; HET: CME DSB; 1.70A {Escherichia coli} SCOP: c.1.10.3 PDB: 1i8j_A* 1l6y_A* 1b4e_A Back     alignment and structure
>1pv8_A Delta-aminolevulinic acid dehydratase; porphobilinogen synthase, tetrapyrrole biosynthesis, reactio intermediate, lyase; HET: PB1; 2.20A {Homo sapiens} SCOP: c.1.10.3 PDB: 1e51_A* 2z0i_A 2z1b_A Back     alignment and structure
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri} Back     alignment and structure
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1 Back     alignment and structure
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A* Back     alignment and structure
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ... Back     alignment and structure
>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1 Back     alignment and structure
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 Back     alignment and structure
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0 Back     alignment and structure
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A Back     alignment and structure
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A Back     alignment and structure
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} Back     alignment and structure
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4 Back     alignment and structure
>3eol_A Isocitrate lyase; seattle structural center for infectious disease, ssgcid; 2.00A {Brucella melitensis} PDB: 3oq8_A 3e5b_A 3p0x_A* Back     alignment and structure
>2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomi NPPSFA; 2.30A {Methanocaldococcus jannaschii} Back     alignment and structure
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus} Back     alignment and structure
>3lg3_A Isocitrate lyase; conserved, CD, proteomics evidence (cytopl periplasmic), drug target functions; 1.40A {Yersinia pestis} SCOP: c.1.12.7 PDB: 1igw_A Back     alignment and structure
>2qiw_A PEP phosphonomutase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} Back     alignment and structure
>1f8m_A Isocitrate lyase, ICL; alpha-beta barrel, helix-swapping, closed conformation, bromopyuvate modification, structural genomics; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.1.12.7 PDB: 1f61_A 1f8i_A Back     alignment and structure
>1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A* Back     alignment and structure
>3i4e_A Isocitrate lyase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.69A {Burkholderia pseudomallei} Back     alignment and structure
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A Back     alignment and structure
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 Back     alignment and structure
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} Back     alignment and structure
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A* Back     alignment and structure
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A Back     alignment and structure
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A Back     alignment and structure
>1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1 Back     alignment and structure
>2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus} Back     alignment and structure
>3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A Back     alignment and structure
>1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A Back     alignment and structure
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A* Back     alignment and structure
>1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: c.1.12.8 Back     alignment and structure
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa} Back     alignment and structure
>2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A Back     alignment and structure
>1lt8_A Betaine-homocysteine methyltransferase; homocysteine metabolism, homocysteinemia, zinc, thiol alkyl transfer; HET: CBH CIT; 2.05A {Homo sapiens} SCOP: c.1.26.1 PDB: 1lt7_A* 1umy_A Back     alignment and structure
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae} Back     alignment and structure
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A Back     alignment and structure
>1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionin decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8 Back     alignment and structure
>3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A Back     alignment and structure
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A* Back     alignment and structure
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum} Back     alignment and structure
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A Back     alignment and structure
>2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A Back     alignment and structure
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis} Back     alignment and structure
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A* Back     alignment and structure
>1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus} Back     alignment and structure
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A Back     alignment and structure
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A* Back     alignment and structure
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4 Back     alignment and structure
>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A Back     alignment and structure
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima} Back     alignment and structure
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* Back     alignment and structure
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A Back     alignment and structure
>3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A Back     alignment and structure
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A* Back     alignment and structure
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 Back     alignment and structure
>3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A Back     alignment and structure
>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A Back     alignment and structure
>1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: c.1.12.8 Back     alignment and structure
>2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A {Staphylococcus aureus} Back     alignment and structure
>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesi isomerase; HET: DGL; 1.75A {Bacillus subtilis} Back     alignment and structure
>3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7 Back     alignment and structure
>2dgd_A 223AA long hypothetical arylmalonate decarboxylas; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii} Back     alignment and structure
>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A Back     alignment and structure
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 432
d1gzga_329 c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD 1e-120
d2c1ha1319 c.1.10.3 (A:10-328) 5-aminolaevulinate dehydratase 1e-119
d1l6sa_323 c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD 1e-118
d1pv8a_320 c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD 1e-111
d1h7na_340 c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD 1e-106
>d1gzga_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Pseudomonas aeruginosa [TaxId: 287]} Length = 329 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase)
domain: 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase)
species: Pseudomonas aeruginosa [TaxId: 287]

 Score =  352 bits (904), Expect = e-120
 Identities = 147/328 (44%), Positives = 210/328 (64%), Gaps = 9/328 (2%)

Query: 103 SRRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGE-EDTPIGAMPGCYRLGWRHGLVQ 161
             R RRNR+    R   +E  L+  + + P+F+ +G  +   I +MPG  RL     L+ 
Sbjct: 6   YTRLRRNRRDDFSRRLVRENVLTVDDLILPVFVLDGVNQRESIPSMPGVERLSIDQ-LLI 64

Query: 162 EVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVAL 221
           E  +   +G+ ++ LFP  P   KS    EAYN  G+  R    L++R+P+L I TDVAL
Sbjct: 65  EAEEWVALGIPALALFPVTPVEKKSLDAAEAYNPEGIAQRATRALRERFPELGIITDVAL 124

Query: 222 DPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALD 281
           DP+++ G +GI+ +DG ++ND ++  L +QA+S A AGA VV+PSDMMDGR+GAIR AL+
Sbjct: 125 DPFTTHGQNGILDDDGYVLNDVSIDVLVRQALSHAEAGAQVVAPSDMMDGRIGAIREALE 184

Query: 282 AEGFQHVSIMSYTAKYASSFYGPFREALDS--NPRFGDKKTYVIRVIELYANYREALVEA 339
           + G  +V +M+Y+AKYAS++YGPFR+A+ S  N   G+K TY +      AN  EAL E 
Sbjct: 185 SAGHTNVRVMAYSAKYASAYYGPFRDAVGSASNLGKGNKATYQM----DPANSDEALHEV 240

Query: 340 QADESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRV 399
            AD +EGAD+++VKPG+PYLD++R ++D++  P   YQVSGEY+M         + E  V
Sbjct: 241 AADLAEGADMVMVKPGMPYLDIVRRVKDEFRAPTFVYQVSGEYAMHMGAIQNGWLAE-SV 299

Query: 400 MMESLMCLRRAGADIILTYFALQAARCL 427
           ++ESL   +RAGAD ILTYFA QAA  L
Sbjct: 300 ILESLTAFKRAGADGILTYFAKQAAEQL 327
>d2c1ha1 c.1.10.3 (A:10-328) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Prosthecochloris vibrioformis [TaxId: 1098]} Length = 319 Back     information, alignment and structure
>d1l6sa_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Escherichia coli [TaxId: 562]} Length = 323 Back     information, alignment and structure
>d1pv8a_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Human (Homo sapiens) [TaxId: 9606]} Length = 320 Back     information, alignment and structure
>d1h7na_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 340 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query432
d2c1ha1319 5-aminolaevulinate dehydratase, ALAD (porphobilino 100.0
d1gzga_329 5-aminolaevulinate dehydratase, ALAD (porphobilino 100.0
d1l6sa_323 5-aminolaevulinate dehydratase, ALAD (porphobilino 100.0
d1h7na_340 5-aminolaevulinate dehydratase, ALAD (porphobilino 100.0
d1pv8a_320 5-aminolaevulinate dehydratase, ALAD (porphobilino 100.0
d1ykwa1283 Ribulose 1,5-bisphosphate carboxylase-oxygenase {C 93.53
d2d69a1291 Ribulose 1,5-bisphosphate carboxylase-oxygenase {A 92.14
d3bofa2300 Cobalamin-dependent methionine synthase MetH, N-te 91.56
d1ps9a1330 2,4-dienoyl-CoA reductase, N-terminal domain {Esch 90.9
d1oy0a_262 Ketopantoate hydroxymethyltransferase PanB {Mycoba 90.68
d1xkya1 292 Dihydrodipicolinate synthase {Bacillus anthracis [ 90.59
d1xxxa1 296 Dihydrodipicolinate synthase {Mycobacterium tuberc 90.47
d1geha1 307 Ribulose 1,5-bisphosphate carboxylase-oxygenase {A 87.24
d1wdda1 325 Ribulose 1,5-bisphosphate carboxylase-oxygenase {R 85.83
d1km4a_212 Orotidine 5'-monophosphate decarboxylase (OMP deca 84.34
d1s2wa_275 Phosphoenolpyruvate mutase {Blue mussel (Mytilus e 82.12
d1muma_289 2-methylisocitrate lyase {Escherichia coli [TaxId: 81.27
d1gqna_252 Type I 3-dehydroquinate dehydratase {Salmonella ty 80.81
>d2c1ha1 c.1.10.3 (A:10-328) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Prosthecochloris vibrioformis [TaxId: 1098]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase)
domain: 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase)
species: Prosthecochloris vibrioformis [TaxId: 1098]

Probab=100.00  E-value=4.1e-150  Score=1104.52  Aligned_cols=317  Identities=53%  Similarity=0.884  Sum_probs=310.5

Q ss_pred             CCCCCCCCChhhHhhhccCCCCCCCceeeEEEeeCCC-CcccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCC
Q 014017          104 RRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEE-DTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPD  182 (432)
Q Consensus       104 ~R~RRlR~~~~~R~l~~Et~Ls~~~LI~PlFV~eg~~-~~~I~sMPGv~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~  182 (432)
                      .|+||+|+|+++|+|++||+|+++||||||||+||.+ ++||+|||||||||+| .|++++++++++||++|+|||+ | 
T Consensus         2 ~R~RRlR~~~~iR~Lv~Et~Ls~~dLI~PiFV~eg~~~~~~I~SMPGi~R~Sid-~L~~~ie~~~~lGI~av~LFpv-~-   78 (319)
T d2c1ha1           2 HRPRRLRRTAALRNLVQENTLTVNDLVFPLFVMPGTNAVEEVSSMPGSFRFTID-RAVEECKELYDLGIQGIDLFGI-P-   78 (319)
T ss_dssp             CCGGGGSSCHHHHHHHCCCCCCGGGEEEEEEECSSSSCEEECTTSTTCEEECHH-HHHHHHHHHHHTTCCEEEEEEC-C-
T ss_pred             CCcccCCCCHHHHHHHhhCCCCHHHceeeeEEeeCCCCceecCCCCCcceeCHH-HHHHHHHHHHhccCcEEEEEec-c-
Confidence            6999999999999999999999999999999999985 6899999999999997 6999999999999999999996 5 


Q ss_pred             CCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCe
Q 014017          183 ALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADV  262 (432)
Q Consensus       183 ~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADi  262 (432)
                      +.||+.|++|||+||++|||||.||++||||+|||||||||||+||||||++ +|.||||+||+.|++||++||+|||||
T Consensus        79 ~~K~k~gseA~n~dglv~rAir~iK~~fpdl~Ii~DVcLcpYT~hGHcGi~~-~g~IdND~Tl~~L~k~Al~~A~AGaDi  157 (319)
T d2c1ha1          79 EQKTEDGSEAYNDNGILQQAIRAIKKAVPELCIMTDVALDPFTPFGHDGLVK-DGIILNDETVEVLQKMAVSHAEAGADF  157 (319)
T ss_dssp             SCCCTTCGGGGCTTCHHHHHHHHHHHHCTTSEEEEECCSGGGSTTCCSSCBS-SSCBCSHHHHHHHHHHHHHHHHHTCSE
T ss_pred             cccccCchhhcccccHHHHHHHHHHhhhcCeEEEeecccchhhhhcccceec-CCCcchHHHHHHHHHHHHHHHhcCCCc
Confidence            3699999999999999999999999999999999999999999999999995 799999999999999999999999999


Q ss_pred             ecCCCCCCchHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhc
Q 014017          263 VSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQAD  342 (432)
Q Consensus       263 VAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~D  342 (432)
                      |||||||||||++||++||++||++|+|||||+||||+||||||||++|+|+||||+|||||    |+|.+||++|+.+|
T Consensus       158 VAPSdMMDGrV~aIR~~Ld~~g~~~v~ImSYsaKfaS~fYGPFRda~~S~p~~gdr~~YQmd----~~n~~eA~~e~~~D  233 (319)
T d2c1ha1         158 VSPSDMMDGRIGAIREALDETDHSDVGILSYAAKYASSFYGPFRDALHSAPQFGDKSTYQMN----PANTEEAMKEVELD  233 (319)
T ss_dssp             EECCSCCTTHHHHHHHHHHHTTCTTSEEEEEEEEBCCSCCHHHHHHSCCCCCCSCSTTTSBC----TTCSHHHHHHHHHH
T ss_pred             ccccccchhHHHHHHHHHHhcCcccceeeeHHHHHhHHhhHHHHHHHhchhhcCCcceeecC----CCChHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999    99999999999999


Q ss_pred             hhcCCcEEEEcCCCchhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEeehhcHHH
Q 014017          343 ESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYFALQ  422 (432)
Q Consensus       343 i~EGAD~lMVKPal~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~IiTYfA~~  422 (432)
                      ++|||||||||||++|||||+++|++|++||+||||||||+|||+|+++||+|++++++|+|++|||||||+||||||+|
T Consensus       234 ~~EGAD~lMVKPa~~yLDii~~~k~~~~~Pv~aYqVSGEYamik~a~~~g~~d~~~~~~Esl~~~kRAGAd~IitY~A~~  313 (319)
T d2c1ha1         234 IVEGADIVMVKPGLAYLDIVWRTKERFDVPVAIYHVSGEYAMVKAAAAKGWIDEDRVMMESLLCMKRAGADIIFTYYAKE  313 (319)
T ss_dssp             HHHTCSEEEEESCGGGHHHHHHHHHHHCSCEEEEECHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSEEEETTHHH
T ss_pred             HhcCCCeEEecchhHHHHHHHHHHhccCCCEEEEEcchHHHHHHHHHHCCCCcHHHHHHHHHHHHHHcCCCEEEEccHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHh
Q 014017          423 AARCLC  428 (432)
Q Consensus       423 ~a~wL~  428 (432)
                      +|+||+
T Consensus       314 ~a~~Lk  319 (319)
T d2c1ha1         314 AAKKLR  319 (319)
T ss_dssp             HHHHC-
T ss_pred             HHHhhC
Confidence            999995
>d1gzga_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1l6sa_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1h7na_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pv8a_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ykwa1 c.1.14.1 (A:146-428) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Chlorobium tepidum [TaxId: 1097]} Back     information, alignment and structure
>d2d69a1 c.1.14.1 (A:134-424) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d3bofa2 c.1.26.1 (A:1-300) Cobalamin-dependent methionine synthase MetH, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1oy0a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]} Back     information, alignment and structure
>d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1geha1 c.1.14.1 (A:137-443) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Archaeon Thermococcus kodakaraensis [TaxId: 311400]} Back     information, alignment and structure
>d1wdda1 c.1.14.1 (A:151-475) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Rice (Oryza sativa) [TaxId: 4530]} Back     information, alignment and structure
>d1km4a_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel (Mytilus edulis) [TaxId: 6550]} Back     information, alignment and structure
>d1muma_ c.1.12.7 (A:) 2-methylisocitrate lyase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gqna_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Salmonella typhi [TaxId: 90370]} Back     information, alignment and structure