Citrus Sinensis ID: 014050

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-
MAPSVESSSAVTARGRLAVLTAHLASTESNQGRLIEPWCTSAQSMVPPPGNLKGSLTVVDERTGKRYQIPVSQEGTVKATDFKKITTGKNDKGLKLYDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPDANPALKGQDIYKSKQVRDKQIARILGKAPTIAAAAYLRMAGRPPVLPSNNLSYSENFLYMLDSLGNRAYKPNPRLARVLDVLFILHAEHEMNCSTSAARHLASSGVDVYTALAGAVGALYGPLHGGANEAVLKMLNEIGTVENIPEFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDPLIEVAVALEKAALSDEYFVKRKLYPNVDFYSGLIYRYE
ccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccEEEEEccccEEEEEEEEccccccccccccccccccccccEEEcccccccccEEEccEEEEccccEEEEccccHHHHHccccHHHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHcccccccHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHcccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccccccccccccccccccc
ccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccEEEEEEcccccEEEEEEccccEEccccHEEHHHHHHcccccEEccccccEEEEEEccEEEEccccEEEEccEEHHHHHHHccHHHHHHHHHHcccccHHHHHHHHHHHHccccccHHHHHHHccccccccHHHHHHHHHccHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHcEccEcccccHHHHHHHHHHHHccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccHHHcccccccccccccccccccccccccEcccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcHHHHHHcccEcHHHHHHHHHHEc
mapsvesssaVTARGRLAVLTAHLAstesnqgrliepwctsaqsmvpppgnlkgsltvvdertgkryqipvsqegtvkatdfkkittgkndkglklydpgylntapvrssicyidgdegilryrgypieelaessSFLEVAYLLMYgnlpsesqltdWEFAVSQHSAVPQGILDIIQamphdahpMGVLVSAMSAlsifhpdanpalkgqdiykskqVRDKQIARILGKAPTIAAAAYLRmagrppvlpsnnlsysENFLYMLDSlgnraykpnprlARVLDVLFILHAEHEMNCSTSAARHLASSGVDVYTALAGAVgalygplhggaNEAVLKMLNEigtvenipEFIEGVKNRKRkmsgfghrvyknydpRAKVIRKLAEEVFSIVGRDPLIEVAVALEKAAlsdeyfvkrklypnvdfysgliyrye
mapsvesssavtaRGRLAVLTAHLastesnqgrLIEPWCTSAQSMVPPPGNLKGSLTVVDERTGkryqipvsqegtvkatdfkkittgkndkglklydpGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPDANPALKGQDIYKSKQVRDKQIARILGKAPTIAAAAYLRMAGRPPVLPSNNLSYSENFLYMLDSLGNRAYKPNPRLARVLDVLFILHAEHEMNCSTSAARHLASSGVDVYTALAGAVGALYGPLHGGANEAVLKMLNEIGTVENIPEFIEGVKNRkrkmsgfghrvyknydprAKVIRKLAEEVFSIVGRDPLIEVAVALEKaalsdeyfvkrklypnvdfysgliyrye
MAPSVESSSAVTARGRLAVLTAHLASTESNQGRLIEPWCTSAQSMVPPPGNLKGSLTVVDERTGKRYQIPVSQEGTVKATDFKKITTGKNDKGLKLYDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPDANPALKGQDIYKSKQVRDKQIARILGKAPTIAAAAYLRMAGRPPVLPSNNLSYSENFLYMLDSLGNRAYKPNPRLARVLDVLFILHAEHEMNCSTSAARHLASSGVDVYTALAGAVGALYGPLHGGANEAVLKMLNEIGTVENIPEFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDPLIEVAVALEKAALSDEYFVKRKLYPNVDFYSGLIYRYE
****************LAVLTAHL********RLIEPWCT**************************YQIPV****TVKATDFKKITTGKNDKGLKLYDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPDANPALKGQDIYKSKQVRDKQIARILGKAPTIAAAAYLRMAGRPPVLPSNNLSYSENFLYMLDSLGNRAYKPNPRLARVLDVLFILHAEHEMNCSTSAARHLASSGVDVYTALAGAVGALYGPLHGGANEAVLKMLNEIGTVENIPEFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDPLIEVAVALEKAALSDEYFVKRKLYPNVDFYSGLIYRY*
*********************************************************VVDERTGKRYQIPVSQEGTVKATDFKKITTGKNDKGLKLYDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPDANPALKGQDIYKSKQVRDKQIARILGKAPTIAAAAYLRMAGRPPVLPSNNLSYSENFLYMLDSLGNRAYKPNPRLARVLDVLFILHAEHEMNCSTSAARHLASSGVDVYTALAGAVGALYGPLHGGANEAVLKMLNEIGTVENIPEFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDPLIEVAVALEKAALSDEYFVKRKLYPNVDFYSGLIYRYE
***********TARGRLAVLTAHLASTESNQGRLIEPWCTSAQSMVPPPGNLKGSLTVVDERTGKRYQIPVSQEGTVKATDFKKITTGKNDKGLKLYDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPDANPALKGQDIYKSKQVRDKQIARILGKAPTIAAAAYLRMAGRPPVLPSNNLSYSENFLYMLDSLGNRAYKPNPRLARVLDVLFILHAEHEMNCSTSAARHLASSGVDVYTALAGAVGALYGPLHGGANEAVLKMLNEIGTVENIPEFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDPLIEVAVALEKAALSDEYFVKRKLYPNVDFYSGLIYRYE
****************************************************KGSLTVVDERTGKRYQIPVSQEGTVKATDFKKITTGKNDKGLKLYDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPDANPALKGQDIYKSKQVRDKQIARILGKAPTIAAAAYLRMAGRPPVLPSNNLSYSENFLYMLDSLGNRAYKPNPRLARVLDVLFILHAEHEMNCSTSAARHLASSGVDVYTALAGAVGALYGPLHGGANEAVLKMLNEIGTVENIPEFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDPLIEVAVALEKAALSDEYFVKRKLYPNVDFYSGLIYRYE
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MAPSVESSSAVTARGRLAVLTAHLASTESNQGRLIEPWCTSAQSMVPPPGNLKGSLTVVDERTGKRYQIPVSQEGTVKATDFKKITTGKNDKGLKLYDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPDANPALKGQDIYKSKQVRDKQIARILGKAPTIAAAAYLRMAGRPPVLPSNNLSYSENFLYMLDSLGNRAYKPNPRLARVLDVLFILHAEHEMNCSTSAARHLASSGVDVYTALAGAVGALYGPLHGGANEAVLKMLNEIGTVENIPEFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDPLIEVAVALEKAALSDEYFVKRKLYPNVDFYSGLIYRYE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query431 2.2.26 [Sep-21-2011]
Q9LXS6514 Citrate synthase 2, perox yes no 0.965 0.809 0.873 0.0
P49299516 Citrate synthase, glyoxys N/A no 0.995 0.831 0.854 0.0
Q9SJH7509 Citrate synthase 3, perox no no 0.962 0.815 0.867 0.0
Q9LXS7480 Citrate synthase 1, perox no no 0.967 0.868 0.765 0.0
Q86AV6 512 Citrate synthase OS=Dicty yes no 0.872 0.734 0.596 1e-139
Q8MQU6492 Citrate synthase, peroxis no no 0.939 0.823 0.570 1e-137
P94325434 Citrate synthase OS=Brady yes no 0.844 0.838 0.475 4e-93
Q1RGV8435 Citrate synthase OS=Ricke yes no 0.756 0.749 0.479 5e-90
Q59734412 Citrate synthase (Fragmen yes no 0.756 0.791 0.479 7e-90
O33915429 Citrate synthase OS=Rhizo yes no 0.828 0.832 0.462 8e-90
>sp|Q9LXS6|CISY2_ARATH Citrate synthase 2, peroxisomal OS=Arabidopsis thaliana GN=CSY2 PE=2 SV=1 Back     alignment and function desciption
 Score =  764 bits (1974), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/420 (87%), Positives = 390/420 (92%), Gaps = 4/420 (0%)

Query: 14  RGRLAVLTAHLASTES----NQGRLIEPWCTSAQSMVPPPGNLKGSLTVVDERTGKRYQI 69
           + RLAVLTAHLA +++         I PWCTSA     P G+LKG+LT+VDERTGK+YQ+
Sbjct: 8   KARLAVLTAHLAVSDTVGLEQVLPAIAPWCTSAHITAAPHGSLKGNLTIVDERTGKKYQV 67

Query: 70  PVSQEGTVKATDFKKITTGKNDKGLKLYDPGYLNTAPVRSSICYIDGDEGILRYRGYPIE 129
           PVS+ GTVKA D KKITTGK+DKGLKLYDPGYLNTAPVRSSICYIDGDEGILRYRGYPIE
Sbjct: 68  PVSEHGTVKAVDLKKITTGKDDKGLKLYDPGYLNTAPVRSSICYIDGDEGILRYRGYPIE 127

Query: 130 ELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVL 189
           ELAESS+F+EVAYLLMYGNLPS+SQL DWEF VSQHSAVPQG+LDIIQ+MPHDAHPMGVL
Sbjct: 128 ELAESSTFIEVAYLLMYGNLPSQSQLADWEFTVSQHSAVPQGVLDIIQSMPHDAHPMGVL 187

Query: 190 VSAMSALSIFHPDANPALKGQDIYKSKQVRDKQIARILGKAPTIAAAAYLRMAGRPPVLP 249
           VSAMSALSIFHPDANPAL GQDIYKSKQVRDKQI RILGKAPTIAAAAYLR AGRPPVLP
Sbjct: 188 VSAMSALSIFHPDANPALSGQDIYKSKQVRDKQIVRILGKAPTIAAAAYLRTAGRPPVLP 247

Query: 250 SNNLSYSENFLYMLDSLGNRAYKPNPRLARVLDVLFILHAEHEMNCSTSAARHLASSGVD 309
           S NLSYSENFLYMLDS+GNR+YKPNPRLARVLD+LFILHAEHEMNCST+AARHLASSGVD
Sbjct: 248 SANLSYSENFLYMLDSMGNRSYKPNPRLARVLDILFILHAEHEMNCSTAAARHLASSGVD 307

Query: 310 VYTALAGAVGALYGPLHGGANEAVLKMLNEIGTVENIPEFIEGVKNRKRKMSGFGHRVYK 369
           VYTA AGAVGALYGPLHGGANEAVLKML EIGT ENIP+FIEGVKNRKRKMSGFGHRVYK
Sbjct: 308 VYTACAGAVGALYGPLHGGANEAVLKMLAEIGTAENIPDFIEGVKNRKRKMSGFGHRVYK 367

Query: 370 NYDPRAKVIRKLAEEVFSIVGRDPLIEVAVALEKAALSDEYFVKRKLYPNVDFYSGLIYR 429
           NYDPRAKVI+KLA+EVFSIVGRDPLIEVAVALEKAALSDEYFVKRKLYPNVDFYSGLIYR
Sbjct: 368 NYDPRAKVIKKLADEVFSIVGRDPLIEVAVALEKAALSDEYFVKRKLYPNVDFYSGLIYR 427
Peroxisomal citrate synthase required for the fatty acid respiration in seedlings, citrate being exported from peroxisomes into mitochondria during respiration of triacylglycerol (TAG). Indeed, complete respiration requires the transfer of carbon in the form of citrate from the peroxisome to the mitochondria.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 3EC: .EC: 3EC: .EC: 1
>sp|P49299|CYSZ_CUCMA Citrate synthase, glyoxysomal OS=Cucurbita maxima PE=1 SV=1 Back     alignment and function description
>sp|Q9SJH7|CISY3_ARATH Citrate synthase 3, peroxisomal OS=Arabidopsis thaliana GN=CSY3 PE=1 SV=1 Back     alignment and function description
>sp|Q9LXS7|CISY1_ARATH Citrate synthase 1, peroxisomal OS=Arabidopsis thaliana GN=CSY1 PE=2 SV=1 Back     alignment and function description
>sp|Q86AV6|CISYC_DICDI Citrate synthase OS=Dictyostelium discoideum GN=gltA PE=3 SV=1 Back     alignment and function description
>sp|Q8MQU6|CISYP_DICDI Citrate synthase, peroxisomal OS=Dictyostelium discoideum GN=cshA PE=2 SV=1 Back     alignment and function description
>sp|P94325|CISY_BRAJA Citrate synthase OS=Bradyrhizobium japonicum (strain USDA 110) GN=gltA PE=3 SV=2 Back     alignment and function description
>sp|Q1RGV8|CISY_RICBR Citrate synthase OS=Rickettsia bellii (strain RML369-C) GN=gltA PE=3 SV=1 Back     alignment and function description
>sp|Q59734|CISY_RICBE Citrate synthase (Fragment) OS=Rickettsia bellii GN=gltA PE=3 SV=1 Back     alignment and function description
>sp|O33915|CISY_RHIME Citrate synthase OS=Rhizobium meliloti (strain 1021) GN=gltA PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query431
224138682508 predicted protein [Populus trichocarpa] 0.976 0.828 0.882 0.0
225446893512 PREDICTED: citrate synthase, glyoxysomal 0.981 0.826 0.872 0.0
449521345512 PREDICTED: citrate synthase, glyoxysomal 0.986 0.830 0.869 0.0
224128736511 predicted protein [Populus trichocarpa] 0.983 0.829 0.873 0.0
449450956 612 PREDICTED: citrate synthase, glyoxysomal 0.986 0.694 0.869 0.0
297820710514 hypothetical protein ARALYDRAFT_486329 [ 0.965 0.809 0.876 0.0
312282631508 unnamed protein product [Thellungiella h 0.958 0.812 0.878 0.0
15231130514 citrate synthase 2 [Arabidopsis thaliana 0.965 0.809 0.873 0.0
1345933516 RecName: Full=Citrate synthase, glyoxyso 0.995 0.831 0.854 0.0
297827981509 hypothetical protein ARALYDRAFT_483376 [ 0.962 0.815 0.870 0.0
>gi|224138682|ref|XP_002322875.1| predicted protein [Populus trichocarpa] gi|222867505|gb|EEF04636.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  777 bits (2007), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/425 (88%), Positives = 405/425 (95%), Gaps = 4/425 (0%)

Query: 7   SSSAVTARGRLAVLTAHL--ASTESNQGRLIEPWCTSAQSMVPPPGNLKGSLTVVDERTG 64
           S S++ ARGRLAVLTAHL  A  ES++   I+ WC SAQ  VP PG+LKG LTV+DERTG
Sbjct: 2   SESSIIARGRLAVLTAHLLGAPLESSEDSDIQRWCVSAQ--VPTPGDLKGVLTVIDERTG 59

Query: 65  KRYQIPVSQEGTVKATDFKKITTGKNDKGLKLYDPGYLNTAPVRSSICYIDGDEGILRYR 124
           K+YQI VSQ+GTVKA+DFKKI+TGK+DKGLKLYDPGYLNTAPV S I YIDGDEGILRYR
Sbjct: 60  KKYQIQVSQDGTVKASDFKKISTGKSDKGLKLYDPGYLNTAPVISKISYIDGDEGILRYR 119

Query: 125 GYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQAMPHDAH 184
           GYPIEELAESS+FLEVAYL++YGNLPS+SQL DWEFA+SQHSAVPQG+LDIIQAMPHDAH
Sbjct: 120 GYPIEELAESSTFLEVAYLILYGNLPSQSQLADWEFAISQHSAVPQGVLDIIQAMPHDAH 179

Query: 185 PMGVLVSAMSALSIFHPDANPALKGQDIYKSKQVRDKQIARILGKAPTIAAAAYLRMAGR 244
           PMGVLVSAMS+LSIFHPDANPAL+GQD+YKSKQVRDKQIARILGKAPTIAAAAYLR+AGR
Sbjct: 180 PMGVLVSAMSSLSIFHPDANPALRGQDLYKSKQVRDKQIARILGKAPTIAAAAYLRLAGR 239

Query: 245 PPVLPSNNLSYSENFLYMLDSLGNRAYKPNPRLARVLDVLFILHAEHEMNCSTSAARHLA 304
           PPVLPS+NLSYSENFLYMLDSLGNR+YKPNPRLARVLD+LFILHAEHEMNCSTSAARHLA
Sbjct: 240 PPVLPSSNLSYSENFLYMLDSLGNRSYKPNPRLARVLDILFILHAEHEMNCSTSAARHLA 299

Query: 305 SSGVDVYTALAGAVGALYGPLHGGANEAVLKMLNEIGTVENIPEFIEGVKNRKRKMSGFG 364
           SSGVDVYTALAGAVGALYGPLHGGANEAVLKML+EIGT+ENIP+FIEGVKNRKRKMSGFG
Sbjct: 300 SSGVDVYTALAGAVGALYGPLHGGANEAVLKMLSEIGTIENIPDFIEGVKNRKRKMSGFG 359

Query: 365 HRVYKNYDPRAKVIRKLAEEVFSIVGRDPLIEVAVALEKAALSDEYFVKRKLYPNVDFYS 424
           HRVYKNYDPRAKVI+KLAEEVFSIVGRDPLIEVAVALEKAAL+DEYFVKRKLYPNVDFYS
Sbjct: 360 HRVYKNYDPRAKVIKKLAEEVFSIVGRDPLIEVAVALEKAALADEYFVKRKLYPNVDFYS 419

Query: 425 GLIYR 429
           GLIYR
Sbjct: 420 GLIYR 424

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225446893|ref|XP_002284064.1| PREDICTED: citrate synthase, glyoxysomal [Vitis vinifera] gi|296086334|emb|CBI31775.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449521345|ref|XP_004167690.1| PREDICTED: citrate synthase, glyoxysomal-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224128736|ref|XP_002320409.1| predicted protein [Populus trichocarpa] gi|222861182|gb|EEE98724.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449450956|ref|XP_004143228.1| PREDICTED: citrate synthase, glyoxysomal-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297820710|ref|XP_002878238.1| hypothetical protein ARALYDRAFT_486329 [Arabidopsis lyrata subsp. lyrata] gi|297324076|gb|EFH54497.1| hypothetical protein ARALYDRAFT_486329 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|312282631|dbj|BAJ34181.1| unnamed protein product [Thellungiella halophila] Back     alignment and taxonomy information
>gi|15231130|ref|NP_191434.1| citrate synthase 2 [Arabidopsis thaliana] gi|73917789|sp|Q9LXS6.1|CISY2_ARATH RecName: Full=Citrate synthase 2, peroxisomal; Flags: Precursor gi|7630070|emb|CAB88292.1| citrate synthase-like protein [Arabidopsis thaliana] gi|53850487|gb|AAU95420.1| At3g58750 [Arabidopsis thaliana] gi|55733729|gb|AAV59261.1| At3g58750 [Arabidopsis thaliana] gi|332646305|gb|AEE79826.1| citrate synthase 2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|1345933|sp|P49299.1|CYSZ_CUCMA RecName: Full=Citrate synthase, glyoxysomal; AltName: Full=GCS; Flags: Precursor gi|1084323|pir||S53007 citrate synthase - cucurbit gi|975633|dbj|BAA07328.1| glyoxysomal citrate synthase [Cucurbita cv. Kurokawa Amakuri] Back     alignment and taxonomy information
>gi|297827981|ref|XP_002881873.1| hypothetical protein ARALYDRAFT_483376 [Arabidopsis lyrata subsp. lyrata] gi|297327712|gb|EFH58132.1| hypothetical protein ARALYDRAFT_483376 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query431
TAIR|locus:2098989514 CSY2 "citrate synthase 2" [Ara 0.981 0.822 0.867 1.3e-196
TAIR|locus:2052379509 CSY3 "citrate synthase 3" [Ara 0.962 0.815 0.867 4.9e-195
TAIR|locus:2099089480 CSY1 "AT3G58740" [Arabidopsis 0.967 0.868 0.765 7.5e-176
DICTYBASE|DDB_G0267426492 cshA "citrate synthase" [Dicty 0.939 0.823 0.577 2.9e-126
DICTYBASE|DDB_G0276965 512 gltA "citrate synthase" [Dicty 0.872 0.734 0.596 4.3e-125
UNIPROTKB|Q10530431 gltA2 "Citrate synthase 1" [My 0.765 0.765 0.486 6.4e-83
TIGR_CMR|SO_1926428 SO_1926 "citrate synthase" [Sh 0.809 0.815 0.461 1.4e-80
UNIPROTKB|Q9KQA8431 VC_2092 "Citrate synthase" [Vi 0.816 0.816 0.438 1.6e-79
TIGR_CMR|VC_2092431 VC_2092 "citrate synthase" [Vi 0.816 0.816 0.438 1.6e-79
TIGR_CMR|CPS_2214428 CPS_2214 "citrate synthase I" 0.842 0.848 0.435 1.4e-78
TAIR|locus:2098989 CSY2 "citrate synthase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1904 (675.3 bits), Expect = 1.3e-196, P = 1.3e-196
 Identities = 372/429 (86%), Positives = 395/429 (92%)

Query:     5 VESSSAVTARGRLAVLTAHLASTES---NQGR-LIEPWCTSAQSMVPPPGNLKGSLTVVD 60
             +E S  V AR  LAVLTAHLA +++    Q    I PWCTSA     P G+LKG+LT+VD
Sbjct:     1 MEISQRVKAR--LAVLTAHLAVSDTVGLEQVLPAIAPWCTSAHITAAPHGSLKGNLTIVD 58

Query:    61 ERTGKRYQIPVSQEGTVKATDFKKITTGKNDKGLKLYDPGYLNTAPVRSSICYIDGDEGI 120
             ERTGK+YQ+PVS+ GTVKA D KKITTGK+DKGLKLYDPGYLNTAPVRSSICYIDGDEGI
Sbjct:    59 ERTGKKYQVPVSEHGTVKAVDLKKITTGKDDKGLKLYDPGYLNTAPVRSSICYIDGDEGI 118

Query:   121 LRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQAMP 180
             LRYRGYPIEELAESS+F+EVAYLLMYGNLPS+SQL DWEF VSQHSAVPQG+LDIIQ+MP
Sbjct:   119 LRYRGYPIEELAESSTFIEVAYLLMYGNLPSQSQLADWEFTVSQHSAVPQGVLDIIQSMP 178

Query:   181 HDAHPMGVLVSAMSALSIFHPDANPALKGQDIYKSKQVRDKQIARILGKAPTIAAAAYLR 240
             HDAHPMGVLVSAMSALSIFHPDANPAL GQDIYKSKQVRDKQI RILGKAPTIAAAAYLR
Sbjct:   179 HDAHPMGVLVSAMSALSIFHPDANPALSGQDIYKSKQVRDKQIVRILGKAPTIAAAAYLR 238

Query:   241 MAGRPPVLPSNNLSYSENFLYMLDSLGNRAYKPNPRLARVLDVLFILHAEHEMNCSTSAA 300
              AGRPPVLPS NLSYSENFLYMLDS+GNR+YKPNPRLARVLD+LFILHAEHEMNCST+AA
Sbjct:   239 TAGRPPVLPSANLSYSENFLYMLDSMGNRSYKPNPRLARVLDILFILHAEHEMNCSTAAA 298

Query:   301 RHLASSGVDVYTALAGAVGALYGPLHGGANEAVLKMLNEIGTVENIPEFIEGVKNRKRKM 360
             RHLASSGVDVYTA AGAVGALYGPLHGGANEAVLKML EIGT ENIP+FIEGVKNRKRKM
Sbjct:   299 RHLASSGVDVYTACAGAVGALYGPLHGGANEAVLKMLAEIGTAENIPDFIEGVKNRKRKM 358

Query:   361 SGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDPLIEVAVALEKAALSDEYFVKRKLYPNV 420
             SGFGHRVYKNYDPRAKVI+KLA+EVFSIVGRDPLIEVAVALEKAALSDEYFVKRKLYPNV
Sbjct:   359 SGFGHRVYKNYDPRAKVIKKLADEVFSIVGRDPLIEVAVALEKAALSDEYFVKRKLYPNV 418

Query:   421 DFYSGLIYR 429
             DFYSGLIYR
Sbjct:   419 DFYSGLIYR 427
GO:0004108 "citrate (Si)-synthase activity" evidence=IEA;IGI;ISS
GO:0005737 "cytoplasm" evidence=IEA
GO:0006099 "tricarboxylic acid cycle" evidence=IEA;ISS
GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA
GO:0046912 "transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer" evidence=IEA
GO:0005777 "peroxisome" evidence=IDA
GO:0006635 "fatty acid beta-oxidation" evidence=IGI;RCA
GO:0009506 "plasmodesma" evidence=IDA
GO:0009407 "toxin catabolic process" evidence=RCA
GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA
GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA
GO:0051788 "response to misfolded protein" evidence=RCA
GO:0080129 "proteasome core complex assembly" evidence=RCA
TAIR|locus:2052379 CSY3 "citrate synthase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2099089 CSY1 "AT3G58740" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0267426 cshA "citrate synthase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0276965 gltA "citrate synthase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|Q10530 gltA2 "Citrate synthase 1" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
TIGR_CMR|SO_1926 SO_1926 "citrate synthase" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KQA8 VC_2092 "Citrate synthase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_2092 VC_2092 "citrate synthase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_2214 CPS_2214 "citrate synthase I" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q59730CISY_RICAK2, ., 3, ., 3, ., 10.44350.82360.8637yesno
Q59732CISY_RICAE2, ., 3, ., 3, ., 10.43270.82360.8160yesno
Q59776CISY_RICS12, ., 3, ., 3, ., 10.43270.82360.8160yesno
O33915CISY_RHIME2, ., 3, ., 3, ., 10.46210.82830.8321yesno
Q9SJH7CISY3_ARATH2, ., 3, ., 3, ., 10.86770.96280.8153nono
Q59742CISY_RICJA2, ., 3, ., 3, ., 10.43010.82360.8637yesno
P09948CISY_RICPR2, ., 3, ., 3, ., 10.42850.82590.8165yesno
Q59748CISY_RICMA2, ., 3, ., 3, ., 10.43010.82360.8637yesno
Q86AV6CISYC_DICDI2, ., 3, ., 3, ., 10.59680.87230.7343yesno
P56062CISY_HELPY2, ., 3, ., 3, ., 10.38380.83060.8403yesno
Q59768CISY_RICRH2, ., 3, ., 3, ., 10.43010.82360.8637yesno
P49299CYSZ_CUCMA2, ., 3, ., 3, ., 10.85410.99530.8313N/Ano
P51040CISY_RICFE2, ., 3, ., 3, ., 10.43810.82360.8160yesno
P51041CISY_RICCA2, ., 3, ., 3, ., 10.43540.82360.8637yesno
P51042CISY_RICCN2, ., 3, ., 3, ., 10.42740.82360.8160yesno
P51043CISY_RICTY2, ., 3, ., 3, ., 10.42040.82590.8165yesno
Q59759CISY_RICPA2, ., 3, ., 3, ., 10.43270.82360.8637yesno
P94325CISY_BRAJA2, ., 3, ., 3, ., 10.47530.84450.8387yesno
Q9ZN37CISY_HELPJ2, ., 3, ., 3, ., 10.37970.83290.8427yesno
P51033CISY_BARHE2, ., 3, ., 3, ., 10.44970.83750.8375yesno
P51039CISY_RICAU2, ., 3, ., 3, ., 10.43810.82360.8637yesno
Q9LXS7CISY1_ARATH2, ., 3, ., 3, ., 10.76550.96750.8687nono
Q9LXS6CISY2_ARATH2, ., 3, ., 3, ., 10.87380.96510.8093yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.3.3.10.979
3rd Layer2.3.30.983

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_Genewise1_v1.C_LG_XVI2794
citrate synthase (EC-2.3.3.1) (509 aa)
(Populus trichocarpa)
Predicted Functional Partners:
estExt_Genewise1_v1.C_LG_I4975
malate dehydrogenase (EC-1.1.1.37) (340 aa)
     •• 0.975
eugene3.00021309
malate dehydrogenase (EC-1.1.1.37) (332 aa)
     •• 0.975
eugene3.00081537
RecName- Full=Malate dehydrogenase; EC=1.1.1.37; (332 aa)
     •• 0.975
estExt_fgenesh4_pg.C_LG_XI0680
RecName- Full=Malate dehydrogenase; EC=1.1.1.37; (341 aa)
     •• 0.975
estExt_Genewise1_v1.C_2730019
malate dehydrogenase (EC-1.1.1.37) (332 aa)
     •• 0.975
estExt_fgenesh4_pg.C_LG_VII1232
malate dehydrogenase (EC-1.1.1.37) (355 aa)
     •• 0.973
grail3.0001073802
SubName- Full=Putative uncharacterized protein; (354 aa)
     •• 0.971
fgenesh4_pg.C_LG_XV000664
malate synthase (EC-2.3.3.9) (554 aa)
     •• 0.971
fgenesh4_pm.C_LG_I001100
malate dehydrogenase (EC-1.1.1.37) (356 aa)
     •• 0.970
fgenesh4_pg.C_LG_III000191
SubName- Full=Putative uncharacterized protein; (512 aa)
     •• 0.949

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query431
PLN02456455 PLN02456, PLN02456, citrate synthase 0.0
cd06115410 cd06115, AthCS_per_like, Arabidopsis thaliana (Ath 0.0
cd06107382 cd06107, EcCS_AthCS-per_like, Escherichia coli (Ec 0.0
cd06116384 cd06116, CaCS_like, Chloroflexus aurantiacus (Ca) 1e-167
cd06114400 cd06114, EcCS_like, Escherichia coli (Ec) citrate 1e-166
PRK05614419 PRK05614, gltA, type II citrate synthase; Reviewed 1e-161
cd06118358 cd06118, citrate_synt_like_1, Citrate synthase (CS 1e-161
pfam00285352 pfam00285, Citrate_synt, Citrate synthase 1e-154
TIGR01798412 TIGR01798, cit_synth_I, citrate synthase I (hexame 1e-138
COG0372390 COG0372, GltA, Citrate synthase [Energy production 1e-131
PRK14036377 PRK14036, PRK14036, citrate synthase; Provisional 1e-120
cd06112373 cd06112, citrate_synt_like_1_1, Citrate synthase ( 1e-110
cd06110356 cd06110, BSuCS-II_like, Bacillus subtilis (Bs) cit 1e-110
TIGR01800368 TIGR01800, cit_synth_II, 2-methylcitrate synthase/ 1e-104
cd06101265 cd06101, citrate_synt, Citrate synthase (CS) catal 6e-84
cd06099213 cd06099, CS_ACL-C_CCL, Citrate synthase (CS), citr 3e-82
PRK14034372 PRK14034, PRK14034, citrate synthase; Provisional 4e-79
PRK14033375 PRK14033, PRK14033, citrate synthase; Provisional 2e-78
PRK12349369 PRK12349, PRK12349, citrate synthase 3; Provisiona 5e-78
cd06111362 cd06111, DsCS_like, Cold-active citrate synthase ( 1e-76
PRK14037377 PRK14037, PRK14037, citrate synthase; Provisional 2e-74
cd06109349 cd06109, BsCS-I_like, Bacillus subtilis (Bs) citra 2e-73
cd06108363 cd06108, Ec2MCS_like, Escherichia coli (Ec) 2-meth 5e-71
PRK14035371 PRK14035, PRK14035, citrate synthase; Provisional 2e-69
PRK12351378 PRK12351, PRK12351, methylcitrate synthase; Provis 4e-57
PRK12350353 PRK12350, PRK12350, citrate synthase 2; Provisiona 4e-53
PRK14032447 PRK14032, PRK14032, citrate synthase; Provisional 2e-50
cd06113406 cd06113, citrate_synt_like_1_2, Citrate synthase ( 1e-49
cd06117366 cd06117, Ec2MCS_like_1, Subgroup of Escherichia co 4e-49
PRK09569437 PRK09569, PRK09569, type I citrate synthase; Revie 5e-40
cd06103426 cd06103, ScCS-like, Saccharomyces cerevisiae (Sc) 5e-36
TIGR01793427 TIGR01793, cit_synth_euk, citrate (Si)-synthase, e 3e-30
cd06105427 cd06105, ScCit1-2_like, Saccharomyces cerevisiae ( 5e-30
cd06106428 cd06106, ScCit3_like, Saccharomyces cerevisiae (Sc 2e-22
cd06101265 cd06101, citrate_synt, Citrate synthase (CS) catal 5e-22
PRK06224263 PRK06224, PRK06224, citrate synthase; Provisional 5e-21
cd06102282 cd06102, citrate_synt_like_2, Citrate synthase (CS 7e-21
cd06100227 cd06100, CCL_ACL-C, Citryl-CoA lyase (CCL), the C- 5e-19
PRK06224263 PRK06224, PRK06224, citrate synthase; Provisional 1e-06
PLN02522608 PLN02522, PLN02522, ATP citrate (pro-S)-lyase 5e-04
>gnl|CDD|215250 PLN02456, PLN02456, citrate synthase Back     alignment and domain information 
 Score =  725 bits (1874), Expect = 0.0
 Identities = 262/398 (65%), Positives = 307/398 (77%), Gaps = 1/398 (0%)

Query: 34  LIEPWCTSAQSMVPPPGNLKGSLTVVDERTGKRYQIPVSQEGTVKATDFKKITTGKNDKG 93
                CTS+      PG   GSLT+VD RTGK Y+ P+S+ G V+A   KKI  GK+D G
Sbjct: 1   AAAVSCTSSSLSRAAPGGGSGSLTIVDNRTGKDYESPLSELGPVQAERLKKIKAGKDDLG 60

Query: 94  LKLYDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSES 153
           LK  DPGY NTAPV S I  IDGDEGILR+RGYPIEELAE S F EVAYLL+YGNLP++ 
Sbjct: 61  LKTVDPGYRNTAPVLSEISLIDGDEGILRFRGYPIEELAEKSPFEEVAYLLLYGNLPTKE 120

Query: 154 QLTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPDANPALKGQDIY 213
           QL DWE  + QHSAVP+ +LD+I A+PHDAHPM  LVS + ALS F PDAN  L+GQ  Y
Sbjct: 121 QLADWEAELRQHSAVPEHVLDVIDALPHDAHPMTQLVSGVMALSTFSPDANAYLRGQHKY 180

Query: 214 KSKQVRDKQIARILGKAPTIAAAAYLRMAGRPPVLPSNNLSYSENFLYMLDSLGNRAYKP 273
           KS +VRD+ I R++GK PT+AAA Y RM GR PV+P N+L Y+ENFLYML SLG+R+YKP
Sbjct: 181 KSWEVRDEDIVRLIGKLPTLAAAIYRRMYGRGPVIPDNSLDYAENFLYMLGSLGDRSYKP 240

Query: 274 NPRLARVLDVLFILHAEHEMNCSTSAARHLA-SSGVDVYTALAGAVGALYGPLHGGANEA 332
           +PRLAR+LD+ FI+HA+HE  CST+AARHL  SSGVD YT++A  V AL GPLHGGANEA
Sbjct: 241 DPRLARLLDLYFIIHADHEGGCSTAAARHLVGSSGVDPYTSVAAGVNALAGPLHGGANEA 300

Query: 333 VLKMLNEIGTVENIPEFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRD 392
           VLKML EIGTVENIPE++EGVKN K+ + GFGHRVYKNYDPRAK IR+ A EVF  VG D
Sbjct: 301 VLKMLKEIGTVENIPEYVEGVKNSKKVLPGFGHRVYKNYDPRAKCIREFALEVFKHVGDD 360

Query: 393 PLIEVAVALEKAALSDEYFVKRKLYPNVDFYSGLIYRY 430
           PL +VA ALE+ AL DEYF  RKLYPNVDFYSG++ R 
Sbjct: 361 PLFKVASALEEVALLDEYFKVRKLYPNVDFYSGVLLRA 398

Length = 455
>gnl|CDD|99868 cd06115, AthCS_per_like, Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like Back     alignment and domain information
>gnl|CDD|99860 cd06107, EcCS_AthCS-per_like, Escherichia coli (Ec) citrate synthase (CS) gltA and Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like Back     alignment and domain information
>gnl|CDD|99869 cd06116, CaCS_like, Chloroflexus aurantiacus (Ca) citrate synthase (CS)_like Back     alignment and domain information
>gnl|CDD|99867 cd06114, EcCS_like, Escherichia coli (Ec) citrate synthase (CS) GltA_like Back     alignment and domain information
>gnl|CDD|180164 PRK05614, gltA, type II citrate synthase; Reviewed Back     alignment and domain information
>gnl|CDD|99871 cd06118, citrate_synt_like_1, Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>gnl|CDD|215837 pfam00285, Citrate_synt, Citrate synthase Back     alignment and domain information
>gnl|CDD|233579 TIGR01798, cit_synth_I, citrate synthase I (hexameric type) Back     alignment and domain information
>gnl|CDD|223449 COG0372, GltA, Citrate synthase [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|237591 PRK14036, PRK14036, citrate synthase; Provisional Back     alignment and domain information
>gnl|CDD|99865 cd06112, citrate_synt_like_1_1, Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>gnl|CDD|99863 cd06110, BSuCS-II_like, Bacillus subtilis (Bs) citrate synthase (CS)-II_like Back     alignment and domain information
>gnl|CDD|130859 TIGR01800, cit_synth_II, 2-methylcitrate synthase/citrate synthase II Back     alignment and domain information
>gnl|CDD|99855 cd06101, citrate_synt, Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>gnl|CDD|99853 cd06099, CS_ACL-C_CCL, Citrate synthase (CS), citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL Back     alignment and domain information
>gnl|CDD|184467 PRK14034, PRK14034, citrate synthase; Provisional Back     alignment and domain information
>gnl|CDD|237590 PRK14033, PRK14033, citrate synthase; Provisional Back     alignment and domain information
>gnl|CDD|237069 PRK12349, PRK12349, citrate synthase 3; Provisional Back     alignment and domain information
>gnl|CDD|99864 cd06111, DsCS_like, Cold-active citrate synthase (CS) from an Antarctic bacterial strain DS2-3R (Ds)-like Back     alignment and domain information
>gnl|CDD|184470 PRK14037, PRK14037, citrate synthase; Provisional Back     alignment and domain information
>gnl|CDD|99862 cd06109, BsCS-I_like, Bacillus subtilis (Bs) citrate synthase CS-I_like Back     alignment and domain information
>gnl|CDD|99861 cd06108, Ec2MCS_like, Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like Back     alignment and domain information
>gnl|CDD|184468 PRK14035, PRK14035, citrate synthase; Provisional Back     alignment and domain information
>gnl|CDD|183463 PRK12351, PRK12351, methylcitrate synthase; Provisional Back     alignment and domain information
>gnl|CDD|237070 PRK12350, PRK12350, citrate synthase 2; Provisional Back     alignment and domain information
>gnl|CDD|184465 PRK14032, PRK14032, citrate synthase; Provisional Back     alignment and domain information
>gnl|CDD|99866 cd06113, citrate_synt_like_1_2, Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>gnl|CDD|99870 cd06117, Ec2MCS_like_1, Subgroup of Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like Back     alignment and domain information
>gnl|CDD|181961 PRK09569, PRK09569, type I citrate synthase; Reviewed Back     alignment and domain information
>gnl|CDD|99857 cd06103, ScCS-like, Saccharomyces cerevisiae (Sc) citrate synthase (CS)-like Back     alignment and domain information
>gnl|CDD|130853 TIGR01793, cit_synth_euk, citrate (Si)-synthase, eukaryotic Back     alignment and domain information
>gnl|CDD|99858 cd06105, ScCit1-2_like, Saccharomyces cerevisiae (Sc) citrate synthases Cit1-2_like Back     alignment and domain information
>gnl|CDD|99859 cd06106, ScCit3_like, Saccharomyces cerevisiae (Sc) 2-methylcitrate synthase Cit3-like Back     alignment and domain information
>gnl|CDD|99855 cd06101, citrate_synt, Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>gnl|CDD|235748 PRK06224, PRK06224, citrate synthase; Provisional Back     alignment and domain information
>gnl|CDD|99856 cd06102, citrate_synt_like_2, Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>gnl|CDD|99854 cd06100, CCL_ACL-C, Citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL Back     alignment and domain information
>gnl|CDD|235748 PRK06224, PRK06224, citrate synthase; Provisional Back     alignment and domain information
>gnl|CDD|178137 PLN02522, PLN02522, ATP citrate (pro-S)-lyase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 431
PLN02456455 citrate synthase 100.0
PRK05614419 gltA type II citrate synthase; Reviewed 100.0
cd06115410 AthCS_per_like Arabidopsis thaliana (Ath) peroxiso 100.0
TIGR01798412 cit_synth_I citrate synthase I (hexameric type). T 100.0
cd06116384 CaCS_like Chloroflexus aurantiacus (Ca) citrate sy 100.0
cd06107382 EcCS_AthCS-per_like Escherichia coli (Ec) citrate 100.0
COG0372390 GltA Citrate synthase [Energy production and conve 100.0
cd06114400 EcCS_like Escherichia coli (Ec) citrate synthase ( 100.0
PRK14036377 citrate synthase; Provisional 100.0
PRK12351378 methylcitrate synthase; Provisional 100.0
cd06108363 Ec2MCS_like Escherichia coli (Ec) 2-methylcitrate 100.0
cd06105427 ScCit1-2_like Saccharomyces cerevisiae (Sc) citrat 100.0
cd06112373 citrate_synt_like_1_1 Citrate synthase (CS) cataly 100.0
cd06109349 BsCS-I_like Bacillus subtilis (Bs) citrate synthas 100.0
PRK14035371 citrate synthase; Provisional 100.0
cd06117366 Ec2MCS_like_1 Subgroup of Escherichia coli (Ec) 2- 100.0
cd06106428 ScCit3_like Saccharomyces cerevisiae (Sc) 2-methyl 100.0
PRK14037377 citrate synthase; Provisional 100.0
cd06103426 ScCS-like Saccharomyces cerevisiae (Sc) citrate sy 100.0
PRK14034372 citrate synthase; Provisional 100.0
PRK09569437 type I citrate synthase; Reviewed 100.0
PRK14032447 citrate synthase; Provisional 100.0
PRK12350353 citrate synthase 2; Provisional 100.0
PRK12349369 citrate synthase 3; Provisional 100.0
TIGR01793427 cit_synth_euk citrate (Si)-synthase, eukaryotic. T 100.0
PF00285356 Citrate_synt: Citrate synthase; InterPro: IPR00202 100.0
cd06111362 DsCS_like Cold-active citrate synthase (CS) from a 100.0
cd06118358 citrate_synt_like_1 Citrate synthase (CS) catalyze 100.0
PRK14033375 citrate synthase; Provisional 100.0
TIGR01800368 cit_synth_II 2-methylcitrate synthase/citrate synt 100.0
cd06113406 citrate_synt_like_1_2 Citrate synthase (CS) cataly 100.0
cd06110356 BSuCS-II_like Bacillus subtilis (Bs) citrate synth 100.0
KOG2617458 consensus Citrate synthase [Energy production and 100.0
cd06101265 citrate_synt Citrate synthase (CS) catalyzes the c 100.0
cd06102282 citrate_synt_like_2 Citrate synthase (CS) catalyze 100.0
cd06099213 CS_ACL-C_CCL Citrate synthase (CS), citryl-CoA lya 100.0
PRK06224263 citrate synthase; Provisional 100.0
PLN02522608 ATP citrate (pro-S)-lyase 100.0
cd06100227 CCL_ACL-C Citryl-CoA lyase (CCL), the C-terminal p 100.0
KOG1254600 consensus ATP-citrate lyase [Energy production and 98.77
cd06100227 CCL_ACL-C Citryl-CoA lyase (CCL), the C-terminal p 98.23
cd06099213 CS_ACL-C_CCL Citrate synthase (CS), citryl-CoA lya 84.63
>PLN02456 citrate synthase Back     alignment and domain information 
Probab=100.00  E-value=1.7e-112  Score=885.55  Aligned_cols=384  Identities=67%  Similarity=1.084  Sum_probs=368.9

Q ss_pred             CCCCCCCceEEEEeccCCeEEEeeeeeCCCccceecccccccCCCccceeecCCCcccceeeeeeeeEeCCCCeeEEccC
Q 014050           47 PPPGNLKGSLTVVDERTGKRYQIPVSQEGTVKATDFKKITTGKNDKGLKLYDPGYLNTAPVRSSICYIDGDEGILRYRGY  126 (431)
Q Consensus        47 ~~~~~~~~~l~~~~~r~g~~~~~pi~~~~~~~~~d~~~l~~~~~~~g~~~~dpG~~~t~~~~S~IT~Idg~~G~L~YRGy  126 (431)
                      .++++++++|||+||||||+|++||.+.++++++||++|+++..++|+++|||||+||++|+|+||+|||++|+|+||||
T Consensus        14 ~~~~~~~~~~~~~~~r~g~~~~~~i~~~~~~~~~~~~~l~~~~~~~g~~~~d~Gl~~~~~~~s~IS~iDg~~G~L~YRGy   93 (455)
T PLN02456         14 AAPGGGSGSLTIVDNRTGKDYESPLSELGPVQAERLKKIKAGKDDLGLKTVDPGYRNTAPVLSEISLIDGDEGILRFRGY   93 (455)
T ss_pred             ccCCCCCCcEEEEECCCCcEEEEehhccCCcccchhhhcccCcCccCCEecCcccCCceeeeeeceEEeCCCCEEEECCc
Confidence            45677788999999999999999999548899999999987777899999999999999999999999999999999999


Q ss_pred             CHHHHhhcCCHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHhCCCCCChhHHHHHHHHhhhhcCCCCCcc
Q 014050          127 PIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPDANPA  206 (431)
Q Consensus       127 ~I~eLa~~~sFeEva~LL~~G~LPt~~ql~~f~~~l~~~~~lpe~v~~~~~~~p~~ahPM~~L~a~vsaLs~~~~~~~~~  206 (431)
                      ||+||+++++||||+||||+|+|||++|++.|+.+|.+++.+|+.+.+++++||+++|||.+|++++++|++|+++.++.
T Consensus        94 ~I~dLa~~~~feevayLLl~G~LPt~~el~~f~~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vsal~~~~~~~~~~  173 (455)
T PLN02456         94 PIEELAEKSPFEEVAYLLLYGNLPTKEQLADWEAELRQHSAVPEHVLDVIDALPHDAHPMTQLVSGVMALSTFSPDANAY  173 (455)
T ss_pred             cHHHHHhcCCHHHHHHHHHcCcCCCHHHHHHHHHHHHHhcCCCHHHHHHHHhCCCcCCcHHHHHHHHHhhhhcCcchhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998877


Q ss_pred             ccCCCcccchhHhHHHHHHHHhhhhHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHH
Q 014050          207 LKGQDIYKSKQVRDKQIARILGKAPTIAAAAYLRMAGRPPVLPSNNLSYSENFLYMLDSLGNRAYKPNPRLARVLDVLFI  286 (431)
Q Consensus       207 ~~g~~~~~~~~~~~~~~~rllakiptiaA~~yr~~~G~~~~~p~~~lsy~~NfL~ml~~~~~~~~~~~p~~~~aLd~~LI  286 (431)
                      ..|.+++.+++...++++|||||+|+|+|++||++.|+++++|++++||++|||+||++.+...++|+|..+++||++||
T Consensus       174 ~~g~~~~~~~~~~~~~a~rliAk~p~iaA~~yr~~~g~~~~~P~~~ls~a~Nfl~Ml~~~~~~~~~p~~~~~~~l~~~Li  253 (455)
T PLN02456        174 LRGQHKYKSWEVRDEDIVRLIGKLPTLAAAIYRRMYGRGPVIPDNSLDYAENFLYMLGSLGDRSYKPDPRLARLLDLYFI  253 (455)
T ss_pred             hcccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHhcCCCCcCCCCCHHHHHHHHHHHe
Confidence            77777767777888999999999999999999999999999999999999999999999888889999999999999999


Q ss_pred             HhhccCCCchhhhHHHhh-ccCCCHHHHHHHHhhcccCCcccChHHHHHHHHHHhCCCCCHHHHHHHHhhcCCcccccCC
Q 014050          287 LHAEHEMNCSTSAARHLA-SSGVDVYTALAGAVGALYGPLHGGANEAVLKMLNEIGTVENIPEFIEGVKNRKRKMSGFGH  365 (431)
Q Consensus       287 LhADHeln~ST~aaRvva-St~ad~yaavaAgi~AL~GPlHGGAneavl~mL~eI~~~~~v~~~i~~~k~~~~rL~GFGH  365 (431)
                      ||||||+|||||++|+++ ||++|+|+||+|||+|||||+||||||+|++||++|++++++++||++++++|++||||||
T Consensus       254 LhADHe~n~ST~aar~~a~St~ad~ysavaAgi~aL~GPlHGGA~e~v~~~l~ei~~~~~v~~~v~~~l~~~~~l~GFGH  333 (455)
T PLN02456        254 IHADHEGGCSTAAARHLVGSSGVDPYTSVAAGVNALAGPLHGGANEAVLKMLKEIGTVENIPEYVEGVKNSKKVLPGFGH  333 (455)
T ss_pred             eeccCCCCchhHHHHHHHhccCCCHHHHHHHHhhhcCCCcccChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCcccCCCC
Confidence            999999999999999998 9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCcccccCCCcccccchHhhhccc
Q 014050          366 RVYKNYDPRAKVIRKLAEEVFSIVGRDPLIEVAVALEKAALSDEYFVKRKLYPNVDFYSGLIYRY  430 (431)
Q Consensus       366 rVYk~~DPRA~iL~~~a~el~~~~g~~~l~~iA~~Le~~a~~d~yf~~r~LyPNVDfysg~i~~~  430 (431)
                      ||||++||||++|+++|+++.+..+.+|+++++.+||+++..|+||+.|+||||||||||+||++
T Consensus       334 rvyk~~DPRa~~L~~~a~~l~~~~~~~~~~~ia~~le~~~~~~~~~~~r~l~pNVDfysg~l~~~  398 (455)
T PLN02456        334 RVYKNYDPRAKCIREFALEVFKHVGDDPLFKVASALEEVALLDEYFKVRKLYPNVDFYSGVLLRA  398 (455)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCCCCCcCcHHHHHHHHHH
Confidence            99999999999999999999877788999999999999999999999999999999999999974

>PRK05614 gltA type II citrate synthase; Reviewed Back     alignment and domain information
>cd06115 AthCS_per_like Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like Back     alignment and domain information
>TIGR01798 cit_synth_I citrate synthase I (hexameric type) Back     alignment and domain information
>cd06116 CaCS_like Chloroflexus aurantiacus (Ca) citrate synthase (CS)_like Back     alignment and domain information
>cd06107 EcCS_AthCS-per_like Escherichia coli (Ec) citrate synthase (CS) gltA and Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like Back     alignment and domain information
>COG0372 GltA Citrate synthase [Energy production and conversion] Back     alignment and domain information
>cd06114 EcCS_like Escherichia coli (Ec) citrate synthase (CS) GltA_like Back     alignment and domain information
>PRK14036 citrate synthase; Provisional Back     alignment and domain information
>PRK12351 methylcitrate synthase; Provisional Back     alignment and domain information
>cd06108 Ec2MCS_like Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like Back     alignment and domain information
>cd06105 ScCit1-2_like Saccharomyces cerevisiae (Sc) citrate synthases Cit1-2_like Back     alignment and domain information
>cd06112 citrate_synt_like_1_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>cd06109 BsCS-I_like Bacillus subtilis (Bs) citrate synthase CS-I_like Back     alignment and domain information
>PRK14035 citrate synthase; Provisional Back     alignment and domain information
>cd06117 Ec2MCS_like_1 Subgroup of Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like Back     alignment and domain information
>cd06106 ScCit3_like Saccharomyces cerevisiae (Sc) 2-methylcitrate synthase Cit3-like Back     alignment and domain information
>PRK14037 citrate synthase; Provisional Back     alignment and domain information
>cd06103 ScCS-like Saccharomyces cerevisiae (Sc) citrate synthase (CS)-like Back     alignment and domain information
>PRK14034 citrate synthase; Provisional Back     alignment and domain information
>PRK09569 type I citrate synthase; Reviewed Back     alignment and domain information
>PRK14032 citrate synthase; Provisional Back     alignment and domain information
>PRK12350 citrate synthase 2; Provisional Back     alignment and domain information
>PRK12349 citrate synthase 3; Provisional Back     alignment and domain information
>TIGR01793 cit_synth_euk citrate (Si)-synthase, eukaryotic Back     alignment and domain information
>PF00285 Citrate_synt: Citrate synthase; InterPro: IPR002020 Citrate synthase 2 Back     alignment and domain information
>cd06111 DsCS_like Cold-active citrate synthase (CS) from an Antarctic bacterial strain DS2-3R (Ds)-like Back     alignment and domain information
>cd06118 citrate_synt_like_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>PRK14033 citrate synthase; Provisional Back     alignment and domain information
>TIGR01800 cit_synth_II 2-methylcitrate synthase/citrate synthase II Back     alignment and domain information
>cd06113 citrate_synt_like_1_2 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>cd06110 BSuCS-II_like Bacillus subtilis (Bs) citrate synthase (CS)-II_like Back     alignment and domain information
>KOG2617 consensus Citrate synthase [Energy production and conversion] Back     alignment and domain information
>cd06101 citrate_synt Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>cd06102 citrate_synt_like_2 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>cd06099 CS_ACL-C_CCL Citrate synthase (CS), citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL Back     alignment and domain information
>PRK06224 citrate synthase; Provisional Back     alignment and domain information
>PLN02522 ATP citrate (pro-S)-lyase Back     alignment and domain information
>cd06100 CCL_ACL-C Citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL Back     alignment and domain information
>KOG1254 consensus ATP-citrate lyase [Energy production and conversion] Back     alignment and domain information
>cd06100 CCL_ACL-C Citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL Back     alignment and domain information
>cd06099 CS_ACL-C_CCL Citrate synthase (CS), citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query431
2h12_A436 Structure Of Acetobacter Aceti Citrate Synthase Com 3e-89
3l96_A426 Structural Determination Of The A50t:s279g:s280k:v2 2e-85
1nxe_A427 A Novel Nadh Allosteric Regulator Site Is Found On 9e-85
1k3p_A426 Three Dimensional Structure Analysis Of The Type Ii 1e-84
1owb_A427 Three Dimensional Structure Analysis Of The Variant 2e-84
4e6y_A432 Type Ii Citrate Synthase From Vibrio Vulnificus Len 1e-83
3msu_A427 Crystal Structure Of Citrate Synthase From Francise 4e-75
1aj8_A371 Citrate Synthase From Pyrococcus Furiosus Length = 3e-61
1iom_A377 Crystal Structure Of Citrate Synthase From Thermus 2e-59
2ibp_A409 Crystal Structure Of Citrate Synthase From Pyrobacu 4e-58
2p2w_A367 Crystal Structure Of Citrate Synthase From Thermoto 2e-56
1vgp_A373 Crystal Structure Of An Isozyme Of Citrate Synthase 2e-55
1o7x_A377 Citrate Synthase From Sulfolobus Solfataricus Lengt 3e-54
1vgm_A378 Crystal Structure Of An Isozyme Of Citrate Synthase 3e-50
2c6x_A363 Structure Of Bacillus Subtilis Citrate Synthase Len 8e-48
3hwk_A414 Crystal Structure Of Methylcitrate Synthase From My 2e-44
1a59_A378 Cold-Active Citrate Synthase Length = 378 5e-41
2ifc_A385 The Structure Of The Binary Complex Of Oxalateaceta 1e-40
2r26_A384 The Structure Of The Ternary Complex Of Carboxymeth 1e-40
3o8j_A404 Crystal Structure Of 2-Methylcitrate Synthase (Prpc 3e-38
3tqg_A375 Structure Of The 2-Methylcitrate Synthase (Prpc) Fr 1e-35
6csc_A437 Chicken Citrate Synthase Complex With Trifluoroacet 7e-25
1amz_A435 Chicken Citrate Synthase Complex With Nitromethylde 7e-25
2cts_A437 Crystallographic Refinement And Atomic Models Of Tw 1e-24
4cts_A437 Crystal Structure Analysis And Molecular Model Of A 1e-24
5csc_B429 Structure Of An Open Form Of Chicken Heart Citrate 2e-24
1csc_A433 Structure Of Ternary Complexes Of Citrate Synthase 1e-23
>pdb|2H12|A Chain A, Structure Of Acetobacter Aceti Citrate Synthase Complexed With Oxaloacetate And Carboxymethyldethia Coenzyme A (Cmx) Length = 436 Back     alignment and structure 
Iteration: 1

 Score =  325 bits (833), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 177/386 (45%), Positives = 243/386 (62%), Gaps = 20/386 (5%)
Query: 50  GNLKGSLTVVDERTGKRYQIPVSQEGTV--KATDFKKITTGKNDKGLKLYDPGYLNTAPV 107
           G L  +   VD   GK  ++PV   GT+     D +K+       G+  +DPGY  TA  
Sbjct: 8   GKLSTATISVD---GKSAEMPV-LSGTLGPDVIDIRKLPA---QLGVFTFDPGYGETAAC 60
Query: 108 RSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSA 167
            S I +IDGD+G+L +RGYPI +LAE++S+ EV YLL+ G LP+++Q   +   ++ H+ 
Sbjct: 61  NSKITFIDGDKGVLLHRGYPIAQLAENASYEEVIYLLLNGELPNKAQYDTFTNTLTNHTL 120
Query: 168 VPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPDANPALKGQDIYKSKQVRDKQIARIL 227
           + + I +       DAHPM +L   + ALS F+PDAN      DI      RD    R++
Sbjct: 121 LHEQIRNFFNGFRRDAHPMAILCGTVGALSAFYPDAN------DIAIPAN-RDLAAMRLI 173
Query: 228 GKAPTIAAAAYLRMAGRPPVLPSNNLSYSENFLYMLDSLGNRAYKPNPRLARVLDVLFIL 287
            K PTIAA AY    G   + P N+L+Y+ENFL M+ +  +  YK NP LAR ++ + IL
Sbjct: 174 AKIPTIAAWAYKYTQGEAFIYPRNDLNYAENFLSMMFARMSEPYKVNPVLARAMNRILIL 233
Query: 288 HAEHEMNCSTSAARHLASSGVDVYTALAGAVGALYGPLHGGANEAVLKMLNEIGTVENIP 347
           HA+HE N STS  R   S+G + +  +A  + AL+GP HGGANEAVLKML  IG  ENIP
Sbjct: 234 HADHEQNASTSTVRLAGSTGANPFACIAAGIAALWGPAHGGANEAVLKMLARIGKKENIP 293
Query: 348 EFIEGVKNRKR--KMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVG--RDPLIEVAVALEK 403
            FI  VK++    K+ GFGHRVYKN+DPRAK++++   EV + +G   DPL+++AV LEK
Sbjct: 294 AFIAQVKDKNSGVKLMGFGHRVYKNFDPRAKIMQQTCHEVLTELGIKDDPLLDLAVELEK 353
Query: 404 AALSDEYFVKRKLYPNVDFYSGLIYR 429
            ALSD+YFV+RKLYPNVDFYSG+I +
Sbjct: 354 IALSDDYFVQRKLYPNVDFYSGIILK 379
>pdb|3L96|A Chain A, Structural Determination Of The A50t:s279g:s280k:v281k:k282e:h283n Variant Of Citrate Synthase From E. Coli Length = 426 Back     alignment and structure
>pdb|1NXE|A Chain A, A Novel Nadh Allosteric Regulator Site Is Found On The Surfa Hexameric Type Ii Phe383ala Variant Of Citrate Synthase Length = 427 Back     alignment and structure
>pdb|1K3P|A Chain A, Three Dimensional Structure Analysis Of The Type Ii Citrate From E.Coli Length = 426 Back     alignment and structure
>pdb|1OWB|A Chain A, Three Dimensional Structure Analysis Of The Variant R109l Nadh Complex Of Type Ii Citrate Synthase From E. Coli Length = 427 Back     alignment and structure
>pdb|4E6Y|A Chain A, Type Ii Citrate Synthase From Vibrio Vulnificus Length = 432 Back     alignment and structure
>pdb|3MSU|A Chain A, Crystal Structure Of Citrate Synthase From Francisella Tular Length = 427 Back     alignment and structure
>pdb|1AJ8|A Chain A, Citrate Synthase From Pyrococcus Furiosus Length = 371 Back     alignment and structure
>pdb|1IOM|A Chain A, Crystal Structure Of Citrate Synthase From Thermus Thermophilus Hb8 Length = 377 Back     alignment and structure
>pdb|2IBP|A Chain A, Crystal Structure Of Citrate Synthase From Pyrobaculum Aerophilum Length = 409 Back     alignment and structure
>pdb|2P2W|A Chain A, Crystal Structure Of Citrate Synthase From Thermotoga Maritima Msb8 Length = 367 Back     alignment and structure
>pdb|1VGP|A Chain A, Crystal Structure Of An Isozyme Of Citrate Synthase From Sulfolbus Tokodaii Strain7 Length = 373 Back     alignment and structure
>pdb|1O7X|A Chain A, Citrate Synthase From Sulfolobus Solfataricus Length = 377 Back     alignment and structure
>pdb|1VGM|A Chain A, Crystal Structure Of An Isozyme Of Citrate Synthase From Sulfolbus Tokodaii Strain7 Length = 378 Back     alignment and structure
>pdb|2C6X|A Chain A, Structure Of Bacillus Subtilis Citrate Synthase Length = 363 Back     alignment and structure
>pdb|3HWK|A Chain A, Crystal Structure Of Methylcitrate Synthase From Mycobacterium Tuberculosis Length = 414 Back     alignment and structure
>pdb|1A59|A Chain A, Cold-Active Citrate Synthase Length = 378 Back     alignment and structure
>pdb|2IFC|A Chain A, The Structure Of The Binary Complex Of Oxalateacetate With Citrate Synthase From The Thermophilic Archaeon Thermolasma Acidophilum Length = 385 Back     alignment and structure
>pdb|2R26|A Chain A, The Structure Of The Ternary Complex Of Carboxymethyl Coenzyme A And Oxalateacetate With Citrate Synthase From The Thermophilic Archaeonthermoplasma Acidophilum Length = 384 Back     alignment and structure
>pdb|3O8J|A Chain A, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From Salmonella Typhimurium Length = 404 Back     alignment and structure
>pdb|3TQG|A Chain A, Structure Of The 2-Methylcitrate Synthase (Prpc) From Coxiella Burnetii Length = 375 Back     alignment and structure
>pdb|6CSC|A Chain A, Chicken Citrate Synthase Complex With Trifluoroacetonyl-Coa And Citrate Length = 437 Back     alignment and structure
>pdb|1AMZ|A Chain A, Chicken Citrate Synthase Complex With Nitromethylde-coa And Malate Length = 435 Back     alignment and structure
>pdb|2CTS|A Chain A, Crystallographic Refinement And Atomic Models Of Two Different Forms Of Citrate Synthase At 2.7 And 1.7 Angstroms Resolution Length = 437 Back     alignment and structure
>pdb|4CTS|A Chain A, Crystal Structure Analysis And Molecular Model Of A Complex Of Citrate Synthase With Oxaloacetate And S-Acetonyl- Coenzyme A Length = 437 Back     alignment and structure
>pdb|5CSC|B Chain B, Structure Of An Open Form Of Chicken Heart Citrate Synthase At 2.8 Angstroms Resolution Length = 429 Back     alignment and structure
>pdb|1CSC|A Chain A, Structure Of Ternary Complexes Of Citrate Synthase With D- And L-Malate: Mechanistic Implications Length = 433 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query431
2h12_A436 Citrate synthase; acidophIle, acetic acid resistan 0.0
3msu_A427 Citrate synthase; helix bundle, APHA-beta fold, cs 0.0
3l96_A426 Citrate synthase; quaternary, hexamer, GRAM-negati 0.0
2ibp_A409 Citrate synthase; disulfide bond, homodimer, therm 0.0
1o7x_A377 Citrate synthase; lyase, tricarboxylic acid cycle; 0.0
2ifc_A385 Citrate synthase; oxaloacetate, EC 2.3.3.1, transf 0.0
1vgm_A378 378AA long hypothetical citrate synthase; open for 0.0
1vgp_A373 373AA long hypothetical citrate synthase; open for 0.0
1iom_A377 Citrate synthase; open form, riken structural geno 0.0
1aj8_A371 Citrate synthase; hyperthermostable, lyase; HET: C 0.0
3hwk_A414 Methylcitrate synthase; niaid, ssgcid, structural 1e-179
2c6x_A363 Citrate synthase 1; tricarboxylic acid cycle, tran 1e-171
3o8j_A404 2-methylcitrate synthase; short chain fatty acids, 1e-171
2p2w_A367 Citrate synthase; transferase, structural genomics 1e-170
1csh_A435 Citrate synthase; lyase(OXO-acid); HET: AMX; 1.65A 1e-170
3tqg_A375 2-methylcitrate synthase; energy metabolism, trans 1e-167
1a59_A378 Citrate synthase; cold-activity; HET: COA CIT; 2.0 1e-167
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-04
>2h12_A Citrate synthase; acidophIle, acetic acid resistance, allostery, transferase; HET: CMX; 1.85A {Acetobacter aceti} Length = 436 Back     alignment and structure
 Score =  591 bits (1527), Expect = 0.0
 Identities = 172/389 (44%), Positives = 237/389 (60%), Gaps = 17/389 (4%)

Query: 47  PPPGNLKGSLTVVDERTGKRYQIPVSQEGTV--KATDFKKITTGKNDKGLKLYDPGYLNT 104
                     T      GK  ++PV   GT+     D +K+       G+  +DPGY  T
Sbjct: 2   SASQKEGKLSTATISVDGKSAEMPV-LSGTLGPDVIDIRKL---PAQLGVFTFDPGYGET 57

Query: 105 APVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQ 164
           A   S I +IDGD+G+L +RGYPI +LAE++S+ EV YLL+ G LP+++Q   +   ++ 
Sbjct: 58  AACNSKITFIDGDKGVLLHRGYPIAQLAENASYEEVIYLLLNGELPNKAQYDTFTNTLTN 117

Query: 165 HSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPDANPALKGQDIYKSKQVRDKQIA 224
           H+ + + I +       DAHPM +L   + ALS F+PDAN              RD    
Sbjct: 118 HTLLHEQIRNFFNGFRRDAHPMAILCGTVGALSAFYPDANDI-------AIPANRDLAAM 170

Query: 225 RILGKAPTIAAAAYLRMAGRPPVLPSNNLSYSENFLYMLDSLGNRAYKPNPRLARVLDVL 284
           R++ K PTIAA AY    G   + P N+L+Y+ENFL M+ +  +  YK NP LAR ++ +
Sbjct: 171 RLIAKIPTIAAWAYKYTQGEAFIYPRNDLNYAENFLSMMFARMSEPYKVNPVLARAMNRI 230

Query: 285 FILHAEHEMNCSTSAARHLASSGVDVYTALAGAVGALYGPLHGGANEAVLKMLNEIGTVE 344
            ILHA+HE N STS  R   S+G + +  +A  + AL+GP HGGANEAVLKML  IG  E
Sbjct: 231 LILHADHEQNASTSTVRLAGSTGANPFACIAAGIAALWGPAHGGANEAVLKMLARIGKKE 290

Query: 345 NIPEFIEGVKNRKR--KMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVG--RDPLIEVAVA 400
           NIP FI  VK++    K+ GFGHRVYKN+DPRAK++++   EV + +G   DPL+++AV 
Sbjct: 291 NIPAFIAQVKDKNSGVKLMGFGHRVYKNFDPRAKIMQQTCHEVLTELGIKDDPLLDLAVE 350

Query: 401 LEKAALSDEYFVKRKLYPNVDFYSGLIYR 429
           LEK ALSD+YFV+RKLYPNVDFYSG+I +
Sbjct: 351 LEKIALSDDYFVQRKLYPNVDFYSGIILK 379
>3msu_A Citrate synthase; helix bundle, APHA-beta fold, csgid, center for structural G of infectious diseases, transferase; HET: OAA; 1.84A {Francisella tularensis} Length = 427 Back     alignment and structure
>3l96_A Citrate synthase; quaternary, hexamer, GRAM-negative bacteri allostery, oxaloacetate, acetylcoa, NADH, allosteric enzyme transferase; 1.90A {Escherichia coli} PDB: 3l97_A* 3l98_A* 3l99_A 1k3p_A 1nxe_A 1nxg_A* 1owb_A* 1owc_A 4e6y_A Length = 426 Back     alignment and structure
>2ibp_A Citrate synthase; disulfide bond, homodimer, thermophilic, C transferase; 1.60A {Pyrobaculum aerophilum} Length = 409 Back     alignment and structure
>1o7x_A Citrate synthase; lyase, tricarboxylic acid cycle; 2.7A {Sulfolobus solfataricus} SCOP: a.103.1.1 Length = 377 Back     alignment and structure
>2ifc_A Citrate synthase; oxaloacetate, EC 2.3.3.1, transferase; 1.70A {Thermoplasma acidophilum} PDB: 2r9e_A* 2r26_A* Length = 385 Back     alignment and structure
>1vgm_A 378AA long hypothetical citrate synthase; open form, transferase; 2.00A {Sulfolobus tokodaii} Length = 378 Back     alignment and structure
>1vgp_A 373AA long hypothetical citrate synthase; open form, transferase; 2.70A {Sulfolobus tokodaii} Length = 373 Back     alignment and structure
>1iom_A Citrate synthase; open form, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.50A {Thermus thermophilus} SCOP: a.103.1.1 PDB: 1ixe_A* Length = 377 Back     alignment and structure
>1aj8_A Citrate synthase; hyperthermostable, lyase; HET: COA CIT; 1.90A {Pyrococcus furiosus} SCOP: a.103.1.1 Length = 371 Back     alignment and structure
>3hwk_A Methylcitrate synthase; niaid, ssgcid, structural genomics, seattle structural genomics center for infectious disease, tubercluosis; 2.30A {Mycobacterium tuberculosis} Length = 414 Back     alignment and structure
>2c6x_A Citrate synthase 1; tricarboxylic acid cycle, transferase, allosteric enzyme, enzyme thermostability; HET: COZ CIT; 3.4A {Bacillus subtilis} Length = 363 Back     alignment and structure
>3o8j_A 2-methylcitrate synthase; short chain fatty acids, propionate metabolism, 2-methylcitr cycle, PRPC or 2-MCS, GLTA or CS, 2-methy synthase; 2.41A {Salmonella enterica} Length = 404 Back     alignment and structure
>2p2w_A Citrate synthase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; HET: FLC; 1.90A {Thermotoga maritima} Length = 367 Back     alignment and structure
>1csh_A Citrate synthase; lyase(OXO-acid); HET: AMX; 1.65A {Gallus gallus} SCOP: a.103.1.1 PDB: 1amz_A* 1csi_A* 1csr_A* 1css_A* 1al6_A* 6csc_A* 2cts_A* 3enj_A 1cts_A 4cts_A 1csc_A* 2csc_A* 3csc_A* 4csc_A* 5csc_A 5cts_A* 6cts_A* 5csc_B Length = 435 Back     alignment and structure
>3tqg_A 2-methylcitrate synthase; energy metabolism, transferase; 2.30A {Coxiella burnetii} Length = 375 Back     alignment and structure
>1a59_A Citrate synthase; cold-activity; HET: COA CIT; 2.09A {Antarctic bacterium ds2-3r} SCOP: a.103.1.1 Length = 378 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query431
2h12_A436 Citrate synthase; acidophIle, acetic acid resistan 100.0
3l96_A426 Citrate synthase; quaternary, hexamer, GRAM-negati 100.0
3msu_A427 Citrate synthase; helix bundle, APHA-beta fold, cs 100.0
3hwk_A414 Methylcitrate synthase; niaid, ssgcid, structural 100.0
3tqg_A375 2-methylcitrate synthase; energy metabolism, trans 100.0
1o7x_A377 Citrate synthase; lyase, tricarboxylic acid cycle; 100.0
1vgm_A378 378AA long hypothetical citrate synthase; open for 100.0
3o8j_A404 2-methylcitrate synthase; short chain fatty acids, 100.0
1iom_A377 Citrate synthase; open form, riken structural geno 100.0
2ibp_A409 Citrate synthase; disulfide bond, homodimer, therm 100.0
2ifc_A385 Citrate synthase; oxaloacetate, EC 2.3.3.1, transf 100.0
1vgp_A373 373AA long hypothetical citrate synthase; open for 100.0
2c6x_A363 Citrate synthase 1; tricarboxylic acid cycle, tran 100.0
2p2w_A367 Citrate synthase; transferase, structural genomics 100.0
1aj8_A371 Citrate synthase; hyperthermostable, lyase; HET: C 100.0
1a59_A378 Citrate synthase; cold-activity; HET: COA CIT; 2.0 100.0
1csh_A435 Citrate synthase; lyase(OXO-acid); HET: AMX; 1.65A 100.0
>2h12_A Citrate synthase; acidophIle, acetic acid resistance, allostery, transferase; HET: CMX; 1.85A {Acetobacter aceti} Back     alignment and structure
Probab=100.00  E-value=2.9e-111  Score=872.69  Aligned_cols=367  Identities=47%  Similarity=0.793  Sum_probs=342.5

Q ss_pred             CCCceEEEEeccCCeEEEeeeeeCCC--ccceecccccccCCCccceeecCCCcccceeeeeeeeEeCCCCeeEEccCCH
Q 014050           51 NLKGSLTVVDERTGKRYQIPVSQEGT--VKATDFKKITTGKNDKGLKLYDPGYLNTAPVRSSICYIDGDEGILRYRGYPI  128 (431)
Q Consensus        51 ~~~~~l~~~~~r~g~~~~~pi~~~~~--~~~~d~~~l~~~~~~~g~~~~dpG~~~t~~~~S~IT~Idg~~G~L~YRGy~I  128 (431)
                      +++.++|+  +++||+|||||+. ||  .+++||++|++   ++|++||||||.||++|+|+||+|||++|+|+||||||
T Consensus         8 ~~~~~~~~--~~~~~~~~~pi~~-~~~~~~~~d~~~l~~---~~g~~t~~~Gl~g~~~~~S~Is~idg~~G~L~YRGy~I   81 (436)
T 2h12_A            8 GKLSTATI--SVDGKSAEMPVLS-GTLGPDVIDIRKLPA---QLGVFTFDPGYGETAACNSKITFIDGDKGVLLHRGYPI   81 (436)
T ss_dssp             ---CEEEE--EETTEEEEEEEEC-CSBSCCEEECTTHHH---HHSCEEECTTCTTEEEEEESSEEEETTTTEEEETTEEH
T ss_pred             CCCCeEEE--EECCcEEEEeeec-CCCCCceeeehhhcc---cCCcEeeCCccCCCeeeeeeceEEeCCCCEEEECCeEH
Confidence            44567777  6789999999999 87  57799999964   78999999999999999999999999999999999999


Q ss_pred             HHHhhcCCHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHhCCCCCChhHHHHHHHHhhhhcCCCCCcccc
Q 014050          129 EELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPDANPALK  208 (431)
Q Consensus       129 ~eLa~~~sFeEva~LL~~G~LPt~~ql~~f~~~l~~~~~lpe~v~~~~~~~p~~ahPM~~L~a~vsaLs~~~~~~~~~~~  208 (431)
                      +|||++++||||+||||+|+|||++|++.|..+|.+++.+|+++.+++++||+++|||++|++++++|++|+++...   
T Consensus        82 ~dLa~~~~feEvayLLl~G~LPt~~el~~f~~~l~~~~~lp~~v~~~~~~~p~~~hPM~~l~~~v~aL~~~~~~~~~---  158 (436)
T 2h12_A           82 AQLAENASYEEVIYLLLNGELPNKAQYDTFTNTLTNHTLLHEQIRNFFNGFRRDAHPMAILCGTVGALSAFYPDAND---  158 (436)
T ss_dssp             HHHHHHCCHHHHHHHHHHSSCCCHHHHHHHHHHHHTTCSCCGGGHHHHTTSCTTCCHHHHHHHHHHHHGGGCC-------
T ss_pred             HHHHhcCCHHHHHHHHHcCCCCCHHHHHHHHHHHHhccCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCccccc---
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999886521   


Q ss_pred             CCCcccchhHhHHHHHHHHhhhhHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHh
Q 014050          209 GQDIYKSKQVRDKQIARILGKAPTIAAAAYLRMAGRPPVLPSNNLSYSENFLYMLDSLGNRAYKPNPRLARVLDVLFILH  288 (431)
Q Consensus       209 g~~~~~~~~~~~~~~~rllakiptiaA~~yr~~~G~~~~~p~~~lsy~~NfL~ml~~~~~~~~~~~p~~~~aLd~~LILh  288 (431)
                         . .+.+...++++|||||+|+|+|++||++.|+++++|+++++|++|||+||++.+.+.|+|+|..+++||++||||
T Consensus       159 ---~-~~~~~~~~~a~rLiAk~ptiaa~~yr~~~g~~~~~p~~~ls~a~nfl~ml~g~~~~~~~~~~~~~~~ld~~LiLh  234 (436)
T 2h12_A          159 ---I-AIPANRDLAAMRLIAKIPTIAAWAYKYTQGEAFIYPRNDLNYAENFLSMMFARMSEPYKVNPVLARAMNRILILH  234 (436)
T ss_dssp             --------CCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTSCHHHHHHHHHHCBTTBCCCCCHHHHHHHHHHHHHH
T ss_pred             ---C-CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHhcCCCCccCCCCHHHHHHHHhhheee
Confidence               1 123345678999999999999999999999999999999999999999999988888999999999999999999


Q ss_pred             hccCCCchhhhHHHhhccCCCHHHHHHHHhhcccCCcccChHHHHHHHHHHhCCCCCHHHHHHHHhhcC--CcccccCCC
Q 014050          289 AEHEMNCSTSAARHLASSGVDVYTALAGAVGALYGPLHGGANEAVLKMLNEIGTVENIPEFIEGVKNRK--RKMSGFGHR  366 (431)
Q Consensus       289 ADHeln~ST~aaRvvaSt~ad~yaavaAgi~AL~GPlHGGAneavl~mL~eI~~~~~v~~~i~~~k~~~--~rL~GFGHr  366 (431)
                      ||||+||||||+|++|||++|+|+||+|||+|||||+||||||+|++||++|++++++++||+++|+++  ++|||||||
T Consensus       235 ADHe~NaSTftaRvvaSt~ad~ysaiaAgi~aL~GPlHGGAne~v~~ml~ei~~~~~v~~~i~~~l~~~~g~~imGFGHr  314 (436)
T 2h12_A          235 ADHEQNASTSTVRLAGSTGANPFACIAAGIAALWGPAHGGANEAVLKMLARIGKKENIPAFIAQVKDKNSGVKLMGFGHR  314 (436)
T ss_dssp             SCCSSCHHHHHHHHHHTTTCCHHHHHHHHHHHHHSTTTTTHHHHHHHHHHHHCSGGGHHHHHHHHHCTTSCCCCTTBCCS
T ss_pred             cCCCCchHHHHHHHHHhcCccHHHHHHHHHHhcCCCccCCHHHHHHHHHHHhcCchHHHHHHHHHHhccCCCcccCCCcc
Confidence            999999999999999999999999999999999999999999999999999999999999999999966  899999999


Q ss_pred             CCCCCCchHHHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHhcCcccccCCCcccccchHhhhccc
Q 014050          367 VYKNYDPRAKVIRKLAEEVFSIVG--RDPLIEVAVALEKAALSDEYFVKRKLYPNVDFYSGLIYRY  430 (431)
Q Consensus       367 VYk~~DPRA~iL~~~a~el~~~~g--~~~l~~iA~~Le~~a~~d~yf~~r~LyPNVDfysg~i~~~  430 (431)
                      |||++||||++||++|+++++..|  .+|++++|.+||+++++|+||+.|+||||||||||+||+.
T Consensus       315 VYk~~DPRa~iLk~~a~~l~~~~g~~~~~~~~la~~lE~~al~~~~~~~k~l~pNVDfysg~i~~~  380 (436)
T 2h12_A          315 VYKNFDPRAKIMQQTCHEVLTELGIKDDPLLDLAVELEKIALSDDYFVQRKLYPNVDFYSGIILKA  380 (436)
T ss_dssp             SCSSCCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHSHHHHHTTCCBCTHHHHHHHHHH
T ss_pred             ccCCCCCcHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhccccCCCcChHHHHHHHHHH
Confidence            999999999999999999998888  6899999999999999999999999999999999999974
>3l96_A Citrate synthase; quaternary, hexamer, GRAM-negative bacteri allostery, oxaloacetate, acetylcoa, NADH, allosteric enzyme transferase; 1.90A {Escherichia coli} SCOP: a.103.1.1 PDB: 3l97_A* 3l98_A* 3l99_A 1k3p_A 1nxe_A 1nxg_A* 1owb_A* 1owc_A 4e6y_A Back     alignment and structure
>3msu_A Citrate synthase; helix bundle, APHA-beta fold, csgid, center for structural G of infectious diseases, transferase; HET: OAA; 1.84A {Francisella tularensis} Back     alignment and structure
>3hwk_A Methylcitrate synthase; niaid, ssgcid, structural genomics, seattle structural genomics center for infectious disease, tubercluosis; 2.30A {Mycobacterium tuberculosis} Back     alignment and structure
>3tqg_A 2-methylcitrate synthase; energy metabolism, transferase; 2.30A {Coxiella burnetii} SCOP: a.103.1.0 Back     alignment and structure
>1o7x_A Citrate synthase; lyase, tricarboxylic acid cycle; 2.7A {Sulfolobus solfataricus} SCOP: a.103.1.1 Back     alignment and structure
>1vgm_A 378AA long hypothetical citrate synthase; open form, transferase; 2.00A {Sulfolobus tokodaii} Back     alignment and structure
>3o8j_A 2-methylcitrate synthase; short chain fatty acids, propionate metabolism, 2-methylcitr cycle, PRPC or 2-MCS, GLTA or CS, 2-methy synthase; 2.41A {Salmonella enterica} Back     alignment and structure
>1iom_A Citrate synthase; open form, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.50A {Thermus thermophilus} SCOP: a.103.1.1 PDB: 1ixe_A* Back     alignment and structure
>2ibp_A Citrate synthase; disulfide bond, homodimer, thermophilic, C transferase; 1.60A {Pyrobaculum aerophilum} Back     alignment and structure
>2ifc_A Citrate synthase; oxaloacetate, EC 2.3.3.1, transferase; 1.70A {Thermoplasma acidophilum} PDB: 2r9e_A* 2r26_A* Back     alignment and structure
>1vgp_A 373AA long hypothetical citrate synthase; open form, transferase; 2.70A {Sulfolobus tokodaii} Back     alignment and structure
>2c6x_A Citrate synthase 1; tricarboxylic acid cycle, transferase, allosteric enzyme, enzyme thermostability; HET: COZ CIT; 3.4A {Bacillus subtilis} Back     alignment and structure
>2p2w_A Citrate synthase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; HET: FLC; 1.90A {Thermotoga maritima} Back     alignment and structure
>1aj8_A Citrate synthase; hyperthermostable, lyase; HET: COA CIT; 1.90A {Pyrococcus furiosus} SCOP: a.103.1.1 Back     alignment and structure
>1a59_A Citrate synthase; cold-activity; HET: COA CIT; 2.09A {Antarctic bacterium ds2-3r} SCOP: a.103.1.1 Back     alignment and structure
>1csh_A Citrate synthase; lyase(OXO-acid); HET: AMX; 1.65A {Gallus gallus} SCOP: a.103.1.1 PDB: 1amz_A* 1csi_A* 1csr_A* 1css_A* 1al6_A* 6csc_A* 2cts_A* 3enj_A 1cts_A 4cts_A 1csc_A* 2csc_A* 3csc_A* 4csc_A* 5csc_A 5cts_A* 6cts_A* 5csc_B Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 431
d1k3pa_426 a.103.1.1 (A:) Citrate synthase {Escherichia coli 1e-100
d1ioma_374 a.103.1.1 (A:) Citrate synthase {Thermus thermophi 5e-79
d1o7xa_367 a.103.1.1 (A:) Citrate synthase {Archaeon Sulfolob 4e-77
d1csha_435 a.103.1.1 (A:) Citrate synthase {Chicken (Gallus g 2e-76
d1aj8a_371 a.103.1.1 (A:) Citrate synthase {Archaeon Pyrococc 3e-72
d1a59a_377 a.103.1.1 (A:) Citrate synthase {Antarctic bacteri 4e-69
>d1k3pa_ a.103.1.1 (A:) Citrate synthase {Escherichia coli [TaxId: 562]} Length = 426 Back     information, alignment and structure

class: All alpha proteins
fold: Citrate synthase
superfamily: Citrate synthase
family: Citrate synthase
domain: Citrate synthase
species: Escherichia coli [TaxId: 562]

 Score =  303 bits (776), Expect = e-100
 Identities = 157/372 (42%), Positives = 229/372 (61%), Gaps = 17/372 (4%)

Query: 64  GKRYQIPVSQEGTV--KATDFKKITTGKNDKGLKLYDPGYLNTAPVRSSICYIDGDEGIL 121
               ++ V  +GT+     D + +      KG+  +DPG+ +TA   S I +IDGDEGIL
Sbjct: 12  DTAVELDV-LKGTLGQDVIDIRTL----GSKGVFTFDPGFTSTASCESKITFIDGDEGIL 66

Query: 122 RYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQAMPH 181
            +RG+PI++LA  S++LEV Y+L+ G  P++ Q  +++  V++H+ + + I  +  A   
Sbjct: 67  LHRGFPIDQLATDSNYLEVCYILLNGEKPTQEQYDEFKTTVTRHTMIHEQITRLFHAFRR 126

Query: 182 DAHPMGVLVSAMSALSIFHPDANPALKGQDIYKSKQVRDKQIARILGKAPTIAAAAYLRM 241
           D+HPM V+     AL+ F+ D+           + + R+    R+L K PT+AA  Y   
Sbjct: 127 DSHPMAVMCGITGALAAFYHDSLD-------VNNPRHREIAAFRLLSKMPTMAAMCYKYS 179

Query: 242 AGRPPVLPSNNLSYSENFLYMLDSLGNRAYKPNPRLARVLDVLFILHAEHEMNCSTSAAR 301
            G+P V P N+LSY+ NFL M+ S     Y+ NP L R +D + ILHA+HE N STS  R
Sbjct: 180 IGQPFVYPRNDLSYAGNFLNMMFSTPCEPYEVNPILERAMDRILILHADHEQNASTSTVR 239

Query: 302 HLASSGVDVYTALAGAVGALYGPLHGGANEAVLKMLNEIGTVENIPEFIEGVKNRKR--K 359
              SSG + +  +A  + +L+GP HGGANEA LKML EI +V++IPEF    K++    +
Sbjct: 240 TAGSSGANPFACIAAGIASLWGPAHGGANEAALKMLEEISSVKHIPEFFRRAKDKNDSFR 299

Query: 360 MSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGR-DPLIEVAVALEKAALSDEYFVKRKLYP 418
           + GFGHRVYKNYDPRA V+R+   EV   +G  D L+EVA+ LE  AL+D YF+++KLYP
Sbjct: 300 LMGFGHRVYKNYDPRATVMRETCHEVLKELGTKDDLLEVAMELENIALNDPYFIEKKLYP 359

Query: 419 NVDFYSGLIYRY 430
           NVDFYSG+I + 
Sbjct: 360 NVDFYSGIILKA 371
>d1ioma_ a.103.1.1 (A:) Citrate synthase {Thermus thermophilus [TaxId: 274]} Length = 374 Back     information, alignment and structure
>d1o7xa_ a.103.1.1 (A:) Citrate synthase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 367 Back     information, alignment and structure
>d1csha_ a.103.1.1 (A:) Citrate synthase {Chicken (Gallus gallus) [TaxId: 9031]} Length = 435 Back     information, alignment and structure
>d1aj8a_ a.103.1.1 (A:) Citrate synthase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 371 Back     information, alignment and structure
>d1a59a_ a.103.1.1 (A:) Citrate synthase {Antarctic bacterium DS2-3R [TaxId: 56673]} Length = 377 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query431
d1k3pa_426 Citrate synthase {Escherichia coli [TaxId: 562]} 100.0
d1csha_435 Citrate synthase {Chicken (Gallus gallus) [TaxId: 100.0
d1ioma_374 Citrate synthase {Thermus thermophilus [TaxId: 274 100.0
d1o7xa_367 Citrate synthase {Archaeon Sulfolobus solfataricus 100.0
d1a59a_377 Citrate synthase {Antarctic bacterium DS2-3R [TaxI 100.0
d1aj8a_371 Citrate synthase {Archaeon Pyrococcus furiosus [Ta 100.0
>d1k3pa_ a.103.1.1 (A:) Citrate synthase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: All alpha proteins
fold: Citrate synthase
superfamily: Citrate synthase
family: Citrate synthase
domain: Citrate synthase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.3e-103  Score=810.91  Aligned_cols=365  Identities=44%  Similarity=0.769  Sum_probs=343.1

Q ss_pred             CCCceEEEEeccCCeEEEeeeeeCCC--ccceecccccccCCCccceeecCCCcccceeeeeeeeEeCCCCeeEEccCCH
Q 014050           51 NLKGSLTVVDERTGKRYQIPVSQEGT--VKATDFKKITTGKNDKGLKLYDPGYLNTAPVRSSICYIDGDEGILRYRGYPI  128 (431)
Q Consensus        51 ~~~~~l~~~~~r~g~~~~~pi~~~~~--~~~~d~~~l~~~~~~~g~~~~dpG~~~t~~~~S~IT~Idg~~G~L~YRGy~I  128 (431)
                      ..+++|+|.+   +|+|||||++ ||  ++++||++|+    ++|++||||||.||++|+|+||+|||++|+|+||||||
T Consensus         2 ~~~~~~~~~~---~~~~~~~~~~-~~~g~~~id~~~l~----~~g~~t~dPGl~~t~~~eS~Is~IDGe~G~L~YRGy~I   73 (426)
T d1k3pa_           2 DTKAKLTLNG---DTAVELDVLK-GTLGQDVIDIRTLG----SKGVFTFDPGFTSTASCESKITFIDGDEGILLHRGFPI   73 (426)
T ss_dssp             CSSSEEEEES---SSCEEEEEEC-CSSSCCEEECTTTT----TTTCCEECTTCTTEEEEEESSEEEETTTTEEEETTEEH
T ss_pred             CcceEEEeCC---CceEEeeeee-cCCCCceeehhhhc----cCCeEeECCCCCCceeEEEeceeEeCCceEEEECCEEH
Confidence            4578999965   5899999999 76  7899999997    57999999999999999999999999999999999999


Q ss_pred             HHHhhcCCHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHhCCCCCChhHHHHHHHHhhhhcCCCCCcccc
Q 014050          129 EELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPDANPALK  208 (431)
Q Consensus       129 ~eLa~~~sFeEva~LL~~G~LPt~~ql~~f~~~l~~~~~lpe~v~~~~~~~p~~ahPM~~L~a~vsaLs~~~~~~~~~~~  208 (431)
                      +|||++++||||+||||+|+||+++|++.|+..+.+++.+|+.+.++++.||+++|||.+|.++++++++++++..    
T Consensus        74 ~dLa~~~tFEEVa~LLl~G~LPt~~el~~f~~~l~~~~~lp~~v~~~l~~~P~~ahpm~~L~~~vs~l~a~~~~~~----  149 (426)
T d1k3pa_          74 DQLATDSNYLEVCYILLNGEKPTQEQYDEFKTTVTRHTMIHEQITRLFHAFRRDSHPMAVMCGITGALAAFYHDSL----  149 (426)
T ss_dssp             HHHHHHSCHHHHHHHHHHSSCCCHHHHHHHHHHHHTTCSCCTTTHHHHTTSCTTSCHHHHHHHHHTTHHHHCGGGC----
T ss_pred             HHHHhcCCHHHHHHHHHhCCCChhhhHHHHHHHHHhhccccHHHHHHHHhCcccccchhHHHHHHHHhhccCcccc----
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999887642    


Q ss_pred             CCCcccchhHhHHHHHHHHhhhhHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHh
Q 014050          209 GQDIYKSKQVRDKQIARILGKAPTIAAAAYLRMAGRPPVLPSNNLSYSENFLYMLDSLGNRAYKPNPRLARVLDVLFILH  288 (431)
Q Consensus       209 g~~~~~~~~~~~~~~~rllakiptiaA~~yr~~~G~~~~~p~~~lsy~~NfL~ml~~~~~~~~~~~p~~~~aLd~~LILh  288 (431)
                        +. .++...+..+++++|++|+|+|++||++.|+++++|+++++|++|||+||++.....++++|..+++||++||||
T Consensus       150 --d~-~~~~~~~~~~~~liA~~p~i~A~~~r~~~g~~~i~p~~~ls~aeNfl~ml~~~~~~~~e~~~~~~~al~~~lil~  226 (426)
T d1k3pa_         150 --DV-NNPRHREIAAFRLLSKMPTMAAMCYKYSIGQPFVYPRNDLSYAGNFLNMMFSTPCEPYEVNPILERAMDRILILH  226 (426)
T ss_dssp             --CT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTSCHHHHHHHHHHCBTTBCCCCCHHHHHHHHHHHHTT
T ss_pred             --cc-CCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCCCCccHHHHHHHHHcCCCccccccChHHHHHHHHHHHHH
Confidence              11 344555677889999999999999999999999999999999999999999988888999999999999999999


Q ss_pred             hccCCCchhhhHHHhhccCCCHHHHHHHHhhcccCCcccChHHHHHHHHHHhCCCCCHHHHHHHHhh--cCCcccccCCC
Q 014050          289 AEHEMNCSTSAARHLASSGVDVYTALAGAVGALYGPLHGGANEAVLKMLNEIGTVENIPEFIEGVKN--RKRKMSGFGHR  366 (431)
Q Consensus       289 ADHeln~ST~aaRvvaSt~ad~yaavaAgi~AL~GPlHGGAneavl~mL~eI~~~~~v~~~i~~~k~--~~~rL~GFGHr  366 (431)
                      ||||+||||||+|+++||++|+|+|++||+++|+||+|||||++|++||++|++.+++++|+++.++  ++.||||||||
T Consensus       227 aDH~~n~St~a~r~~aSt~~d~~~a~~aai~al~GplHGgA~~~v~~~l~~i~~~~~~~~~i~~~~~~~~~~ri~GfGH~  306 (426)
T d1k3pa_         227 ADHEQNASTSTVRTAGSSGANPFACIAAGIASLWGPAHGGANEAALKMLEEISSVKHIPEFFRRAKDKNDSFRLMGFGHR  306 (426)
T ss_dssp             SCCSSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSSCTTTTTGGGSTTSSSTTSTTTTSTTTCCSSCCTTTTBCCS
T ss_pred             hhccCcchhHHHHHHhccCchHHHHHHHHHHHhcCcccCCchHHHHHHHHHhCChhhhhHHHHHHHHhhccccccccCCc
Confidence            9999999999999999999999999999999999999999999999999999999999999998876  44589999999


Q ss_pred             CCCCCCchHHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHhcCcccccCCCcccccchHhhhccc
Q 014050          367 VYKNYDPRAKVIRKLAEEVFSIVGR-DPLIEVAVALEKAALSDEYFVKRKLYPNVDFYSGLIYRY  430 (431)
Q Consensus       367 VYk~~DPRA~iL~~~a~el~~~~g~-~~l~~iA~~Le~~a~~d~yf~~r~LyPNVDfysg~i~~~  430 (431)
                      |||+.||||++|+++++++.+..+. ++++++|.++|+++.+++||++|+||||||||||+||+.
T Consensus       307 vy~~~DPRa~~l~~~~~~~~~~~~~~~~~~~~a~~~e~~~~~~~~~~~k~l~pNvD~~~~~l~~~  371 (426)
T d1k3pa_         307 VYKNYDPRATVMRETCHEVLKELGTKDDLLEVAMELENIALNDPYFIEKKLYPNVDFYSGIILKA  371 (426)
T ss_dssp             SCSSCCTTHHHHHHHHHHHHTTSCTTSTTTTHHHHHHHHHHHCHHHHHTTCCBCHHHHHHHHHHH
T ss_pred             cccCCCchHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHhhhhhccCCCCcChHHHHHHHHHH
Confidence            9999999999999999999888775 689999999999999999999999999999999999974
>d1csha_ a.103.1.1 (A:) Citrate synthase {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1ioma_ a.103.1.1 (A:) Citrate synthase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1o7xa_ a.103.1.1 (A:) Citrate synthase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1a59a_ a.103.1.1 (A:) Citrate synthase {Antarctic bacterium DS2-3R [TaxId: 56673]} Back     information, alignment and structure
>d1aj8a_ a.103.1.1 (A:) Citrate synthase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure