Citrus Sinensis ID: 014065

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-
Protein Sequence
MEGVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPVGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAKFI
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHccccccEEEEcccccccHHHHHHHHHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHHHccEEEcccccccHHHHHHHHHcccccEEEEcccccHHHHHHHHHccccEEEEEEEcccccHHHHccccccccccccccccccccEEEEEccccccccccHHHHcHHHHHHHHHHHHHHHccccccEEEEEccHHHHHHHHHHHHHHHHHccEEEEcccccccHHHHHHHHHHccccEEEccHHHHHHHHHcccccccccccccEEEEEccccccHHHHHHHHHHHcccEEEccccHHHccccccccccccccccccccccccccEEEEEccccccccccccEEEEEEcccccHHccccHHHHHHHcccccccccccEEEcccccEEEEcccccEEEcccccccHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHccccEEEEEccccEEcHHHHHHHHHHHHHHHHHcccccccEEEEEEcccHHHHHHHHHHHHccccEEEccccccHHHHHHHHHccccEEEEEcHHHHHHHHHHHHHccccccEEEEEcccHHHHHHHHHHccccccccccccccccEEEEEEEcccccccccEEEcHHHHHHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHHHHcccEEEEcccccccHHHHHHHHHHcccEEEcccHHHHHHHHHcccccccccccccEEEEEccccccHHHHHHHHHHcccEEEEccccccccEEEEEccccccccccccccccccccEEEEEccccccccccccEEEEEEcccccccccccHHHHHHHHcccccccccccEEcccccEEEEEccccEEEEEEEEEccHHHHHHHcc
Coil and Loop (DISEMBL)
MEGVTLIGLLNQVIDQfsskralsvsgkfdltYSRIHELVERAASRLVAAGInagdvvaltfpntVEFVIMFLAVIRARATaaplnaaytpdefeFYLSDseskllltpaeGNAAAQAAASKLNISHATATLLDADSELTLSLahsesdtnaiskltndpsdVALFLhtsgttsrpkgvpltqnnlaASVSNIKSVYKLtesdstvivLPLFHVHGMLAGLLSSFAAGAavtlpaagrfsaSTFWQDMIKYNAtwytavptiHQIVLDrhvakpepvypklrfIRSCSASLAPVILSRLEeafgapvlEAYAMTEAThlmssnplpedgphkpgsvgrpvgqeiaildeigvpqeggakgevcirgpnvtkgyknnpeanksAFLFGwfhtgdigyfdsdgYLHLVGRIKELINRGGNLHESISLFLAKFI
Flexible Loop (DISEMBL)
MEGVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSgttsrpkgvpltqnnlAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPVGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAKFI
Low Complexity Region (SEG)
MEGVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRarataaplnaaYTPDEFEFYLSDSESKLLLTPAEGNaaaqaaaSKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMlagllssfaagaavtlpaaGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPVGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAKFI
Disordered region (IsUnstruct)
***VTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSD*****L**********************************************************LFL******************LAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTE***************************EIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKN**EANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK**
Disordered Region (DISOPRED)
*EGVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSL*************TNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPVGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAKFI
Disordered Region (DISEMBL)
MEGVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPVGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAKFI
Disordered Region (DISPRO)
**GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSE***NAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPVGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAKFI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEGVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPVGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAKFI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	431	2.2.26 [Sep-21-2011]
Q9SMT7	514	4-coumarate--CoA ligase-l	yes	no	0.967	0.811	0.813	0.0
O74976	512	Putative peroxisomal-coen	yes	no	0.925	0.779	0.492	1e-101
P38137	543	Peroxisomal-coenzyme A sy	yes	no	0.837	0.664	0.439	8e-80
Q0K844	509	Probable sulfoacetate--Co	yes	no	0.832	0.705	0.353	4e-54
O07610	513	Long-chain-fatty-acid--Co	yes	no	0.925	0.777	0.295	1e-48
O53306	503	Long-chain-fatty-acid--Co	no	no	0.863	0.739	0.329	2e-42
A8ALR6	517	Probable crotonobetaine/c	yes	no	0.895	0.746	0.306	1e-37
Q65FT5	478	2-succinylbenzoate--CoA l	no	no	0.867	0.782	0.317	2e-37
P94547	560	Long-chain-fatty-acid--Co	no	no	0.928	0.714	0.288	4e-37
A9MYJ6	517	Probable crotonobetaine/c	yes	no	0.870	0.725	0.320	5e-37

>sp|Q9SMT7|4CLLA_ARATH 4-coumarate--CoA ligase-like 10 OS=Arabidopsis thaliana GN=4CLL10 PE=2 SV=1

 Score =  664 bits (1713), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/418 (81%), Positives = 371/418 (88%), Gaps = 1/418 (0%)

Query: 1   MEGVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVA-AGINAGDVVA 59
           M+  TL GLL  V  +F  +RALSVSGKF+LT++R+H+L+ERAASRLV+ AGI  GDVVA
Sbjct: 1   MDSDTLSGLLENVAKKFPDRRALSVSGKFNLTHARLHDLIERAASRLVSDAGIKPGDVVA 60

Query: 60  LTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAA 119
           LTFPNTVEFVIMFLAVIRARATAAPLNAAYT +EFEFYLSDS+SKLLLT  EGNA AQ A
Sbjct: 61  LTFPNTVEFVIMFLAVIRARATAAPLNAAYTAEEFEFYLSDSDSKLLLTSKEGNAPAQEA 120

Query: 120 ASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGV 179
           ASKL ISH TATLLDA S+L LS+A S+S  ++ ++L N P D ALFLHTSGTTSRPKGV
Sbjct: 121 ASKLKISHVTATLLDAGSDLVLSVADSDSVVDSATELVNHPDDGALFLHTSGTTSRPKGV 180

Query: 180 PLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRF 239
           PLTQ NLA+SV NIK+VYKLTESDSTVIVLPLFHVHG+LAGLLSS  AGAAVTLPAAGRF
Sbjct: 181 PLTQLNLASSVKNIKAVYKLTESDSTVIVLPLFHVHGLLAGLLSSLGAGAAVTLPAAGRF 240

Query: 240 SASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRL 299
           SA+TFW DM KYNATWYTAVPTIHQI+LDRH + PE  YPKLRFIRSCSASLAPVILSRL
Sbjct: 241 SATTFWPDMKKYNATWYTAVPTIHQIILDRHASHPETEYPKLRFIRSCSASLAPVILSRL 300

Query: 300 EEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPVGQEIAILDEIGVPQEGGAK 359
           EEAFGAPVLEAYAMTEATHLMSSNPLPE+GPHKPGSVG+PVGQE+AIL+E G  QE   K
Sbjct: 301 EEAFGAPVLEAYAMTEATHLMSSNPLPEEGPHKPGSVGKPVGQEMAILNEKGEIQEPNNK 360

Query: 360 GEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
           GEVCIRGPNVTKGYKNNPEANK+ F FGWFHTGDIGYFD+DGYLHLVGRIKELINRGG
Sbjct: 361 GEVCIRGPNVTKGYKNNPEANKAGFEFGWFHTGDIGYFDTDGYLHLVGRIKELINRGG 418

Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: -

>sp|O74976|FAT2_SCHPO Putative peroxisomal-coenzyme A synthetase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1827.03c PE=1 SV=1

 Score =  370 bits (950), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 205/416 (49%), Positives = 265/416 (63%), Gaps = 17/416 (4%)

Query: 10  LNQVIDQFSSKRAL-SVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEF 68
           L   I   +S RAL + S   +L++S +   +     ++ + GI  GD V +  PN +EF
Sbjct: 6   LYSAIQGDASARALVAPSLNAELSFSELRIAIMDLQRQIASLGIKVGDPVNIAIPNGLEF 65

Query: 69  VIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQA----AASKLN 124
           V+ F AV   RA   PLN+ Y   EFEFY+ D +SKL++ P EG+ AA      AA KL+
Sbjct: 66  VVAFYAVSWQRAICGPLNSNYKQSEFEFYIDDLKSKLVIVP-EGSVAANTPAVRAAKKLS 124

Query: 125 ISHATATLLDADSELTLSLAHSE-SDTNAISKL-TNDPSDVALFLHTSGTTSRPKGVPLT 182
           +  A A L        + + H E +  NA   L    P DV L LHTSGTT RPK VPLT
Sbjct: 125 V--AVAELAWCPKSRLVRIVHFEGAKINAPQPLGLPQPDDVMLVLHTSGTTGRPKVVPLT 182

Query: 183 QNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSAS 242
             NL  S+ NI + Y+L   D++ +V+PLFHVHG+L GLLS+ A+G    +P   +FSA 
Sbjct: 183 HKNLCRSIHNITTSYRLDPRDTSYVVMPLFHVHGLLCGLLSTLASGGCAVVPP--KFSAH 240

Query: 243 TFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEA 302
           +FW++ I+Y ATWYTAVPTIHQI+L     KP    P++RFIRSCS+ LAP +LS+LE  
Sbjct: 241 SFWKEFIQYGATWYTAVPTIHQILLRTPPPKP---LPRIRFIRSCSSPLAPPVLSKLEAT 297

Query: 303 FGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPVGQEIAILDEIGVPQEGGAKGEV 362
           F APVLEAYAMTEA+H M++NPLP    HKP SVG+P G E+ ILD+ G     G +GE+
Sbjct: 298 FRAPVLEAYAMTEASHQMTTNPLPPLV-HKPHSVGKPFGVELKILDQKGNEMPQGKEGEI 356

Query: 363 CIRGPNVTKGYKNNPEANKSAFLFG-WFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
           C+RG NVTKGY NNP ANKS+F    +F TGD G  D DGY+ + GRIKEL+NRGG
Sbjct: 357 CVRGINVTKGYLNNPAANKSSFTKDRFFRTGDEGKLDKDGYVFITGRIKELVNRGG 412

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 6

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|P38137|FAT2_YEAST Peroxisomal-coenzyme A synthetase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PCS60 PE=1 SV=1

 Score =  297 bits (761), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 174/396 (43%), Positives = 223/396 (56%), Gaps = 35/396 (8%)

Query: 56  DVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAA 115
           D VA++  N +EF++ FL         APLN  Y   EF FYL+D +SK +  P +G   
Sbjct: 63  DTVAISMRNGLEFIVAFLGATMDAKIGAPLNPNYKEKEFNFYLNDLKSKAICVP-KGTTK 121

Query: 116 AQAAASKLNISHATATLLDADSELTLSLAHSESDT---------------NAISKLTNDP 160
            Q+  S++  S +T      +     +    E D                N    +  +P
Sbjct: 122 LQS--SEILKSASTFGCFIVELAFDATRFRVEYDIYSPEDNYKRVIYRSLNNAKFVNTNP 179

Query: 161 ---------SDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPL 211
                    SDVAL LHTSGTTS PK VPL   N+  S  NI + YKLT  D + +V+PL
Sbjct: 180 VKFPGFARSSDVALILHTSGTTSTPKTVPLLHLNIVRSTLNIANTYKLTPLDRSYVVMPL 239

Query: 212 FHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHV 271
           FHVHG++  LLS+F    +V +P    F    FW   +KYN  W++ VPTI  I+L+  +
Sbjct: 240 FHVHGLIGVLLSTFRTQGSVVVPDG--FHPKLFWDQFVKYNCNWFSCVPTISMIMLN--M 295

Query: 272 AKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPH 331
            KP P +P +RFIRSCS++LAP    +LE+ F APVLEAYAMTEA+H M+SN LP  G  
Sbjct: 296 PKPNP-FPHIRFIRSCSSALAPATFHKLEKEFNAPVLEAYAMTEASHQMTSNNLPP-GKR 353

Query: 332 KPGSVGRPVGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF--GWF 389
           KPG+VG+P G  + ILD+       G  GEV IRG NVT GY NNP+ANK  F     +F
Sbjct: 354 KPGTVGQPQGVTVVILDDNDNVLPPGKVGEVSIRGENVTLGYANNPKANKENFTKRENYF 413

Query: 390 HTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISL 425
            TGD GYFD +G+L L GRIKELINRGG     I L
Sbjct: 414 RTGDQGYFDPEGFLVLTGRIKELINRGGEKISPIEL 449

Non-essential protein involved in fatty acid metabolism.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 6

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q0K844|SAUT_CUPNH Probable sulfoacetate--CoA ligase OS=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=sauT PE=2 SV=1

 Score =  212 bits (540), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 132/373 (35%), Positives = 191/373 (51%), Gaps = 14/373 (3%)

Query: 49  AAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLT 108
           AAG+ +G  V++  PN  +   + L  +       P+N    P +  + L+ S+++L+ T
Sbjct: 57  AAGLGSGQTVSVYLPNGEQTARLLLGTMACGLVVNPINLLCQPAQLRYILAHSDTRLVFT 116

Query: 109 PAEGNAAAQAAASKLNIS-HATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFL 167
             +G AA + A  +  +      T  DA+S   L   H  +      +        AL +
Sbjct: 117 WPDGEAAIREALREAGLDVPVLVTAPDANSLPALPATHDAASPLPPPQPDA----PALLM 172

Query: 168 HTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAA 227
           +TSGTT  PKGV LTQ NL A+ +N+   + L  +D  +  LPL+H++G++   ++    
Sbjct: 173 YTSGTTGTPKGVLLTQRNLVANGTNVSREHCLGPADRVLATLPLYHINGLVVTAIAPLVH 232

Query: 228 GAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVL-DRHVAKPEPVYPKLRFIRS 286
           G +V +P   RFSAS FWQD  ++  TW   VPTI   +L D H   P  V    RF RS
Sbjct: 233 GGSVVMPM--RFSASAFWQDSARHGCTWLNVVPTIIAYLLNDPHGQAPAGV----RFCRS 286

Query: 287 CSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPVGQEIAI 346
            SA+L P      E  FG  V+E   MTE      SNPL + G  + GS+GRP G    +
Sbjct: 287 ASAALPPEHHRAFEARFGIGVIETMGMTETAAPAFSNPL-DPGQRRIGSIGRPSGTRARV 345

Query: 347 LDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF-GWFHTGDIGYFDSDGYLHL 405
           L   G P   G  GE+ ++G +V  GY   P+  + AF   GW  TGD+GY D+DGY ++
Sbjct: 346 LGRDGKPAPDGQVGEIVLQGESVMAGYYKAPDITREAFTHDGWLRTGDLGYRDADGYFYI 405

Query: 406 VGRIKELINRGGN 418
            GR KELI +GG 
Sbjct: 406 SGRAKELIIKGGE 418

Catalyzes the CoA- and ATP-dependent conversion of sulfoacetate to sulfoacetyl-CoA and AMP.

Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) (taxid: 381666)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|O07610|LCFB_BACSU Long-chain-fatty-acid--CoA ligase OS=Bacillus subtilis (strain 168) GN=lcfB PE=2 SV=2

 Score =  194 bits (493), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 124/419 (29%), Positives = 210/419 (50%), Gaps = 20/419 (4%)

Query: 14  IDQFSSKRALSVSGKFD---LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVI 70
           +++ +S++  S++ +F    +TY  ++E ++R A  L  AG+  GD +AL   N+ +F+I
Sbjct: 7   LEETASEKPDSIACRFKDHMMTYQELNEYIQRFADGLQEAGMEKGDHLALLLGNSPDFII 66

Query: 71  MFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLL-----LTPAEGNAAAQAAASKLNI 125
            F   ++A     P+N  YTP E  + L++ + K +     L P   +        +L I
Sbjct: 67  AFFGALKAGIVVVPINPLYTPTEIGYMLTNGDVKAIVGVSQLLPLYESMHESLPKVELVI 126

Query: 126 SHAT--ATLLDADSELTLSLAHSESDTNAISKLTND----PSDVALFLHTSGTTSRPKGV 179
              T  A    AD E+ + +          S    +    P D A+ L+TSGTT +PKG 
Sbjct: 127 LCQTGEAEPEAADPEVRMKMTTFAKILRPTSAAKQNQEPVPDDTAVILYTSGTTGKPKGA 186

Query: 180 PLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRF 239
            LT  NL ++ +++     + E D+ V  LP+FHV  +   + +   +GA V +    +F
Sbjct: 187 MLTHQNLYSNANDVAGYLGMDERDNVVCALPMFHVFCLTVCMNAPLMSGATVLIEP--QF 244

Query: 240 SASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRL 299
           S ++ ++ + +  AT +  VPT++  +      K +  +  +R   S  AS+   +L+  
Sbjct: 245 SPASVFKLVKQQQATIFAGVPTMYNYLFQHENGKKDD-FSSIRLCISGGASMPVALLTAF 303

Query: 300 EEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPVGQ-EIAILDEIGVPQEGGA 358
           EE FG  +LE Y ++EA+ +   NP   D   KPGS+G  +   E  ++D +G       
Sbjct: 304 EEKFGVTILEGYGLSEASPVTCFNPF--DRGRKPGSIGTSILHVENKVVDPLGRELPAHQ 361

Query: 359 KGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
            GE+ ++GPNV KGY   P   + A   GW +TGD+   D DGY ++V R K++I  GG
Sbjct: 362 VGELIVKGPNVMKGYYKMPMETEHALKDGWLYTGDLARRDEDGYFYIVDRKKDMIIVGG 420

Involved in the degradation of long-chain fatty acids.

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|O53306|FAC13_MYCTU Long-chain-fatty-acid--CoA ligase FadD13 OS=Mycobacterium tuberculosis GN=fadD13 PE=1 SV=1

 Score =  173 bits (438), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 130/394 (32%), Positives = 198/394 (50%), Gaps = 22/394 (5%)

Query: 31  LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
           +TY++++ L  R A  L A GI  GD VAL  PN+VEF  +F    +  A A P+N    
Sbjct: 30  MTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLA 89

Query: 91  PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDT 150
             E  F LSDS SK+++  A       A  ++ +        + ADS L   L  + +D 
Sbjct: 90  APEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIGADS-LAERLRSAAADE 148

Query: 151 NAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLP 210
            A+    +D       ++TSGTT  PKGV  T  ++ ++ S+  S   +   D  ++ LP
Sbjct: 149 PAVECGGDDN---LFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLP 205

Query: 211 LFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRH 270
           +FHV  +   +   F+A   VTL +  +F A+  W  +++       AVP I   +  R 
Sbjct: 206 MFHVAALTTVI---FSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFM--RQ 260

Query: 271 VAK-PEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEA----THLMSSNPL 325
           V +  E   P  R+  +  A + P  L ++  A    V++ YA+TE+    T L+S    
Sbjct: 261 VPEFAELDAPDFRYFITGGAPM-PEALIKIYAAKNIEVVQGYALTESCGGGTLLLS---- 315

Query: 326 PEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAF 384
            ED   K GS GR  +  ++A+  + GV +E G +GEV I+   + K Y N PEA + AF
Sbjct: 316 -EDALRKAGSAGRATMFTDVAVRGDDGVIREHG-EGEVVIKSDILLKEYWNRPEATRDAF 373

Query: 385 LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGN 418
             GWF TGDIG  D +GYL++  R+K++I  GG 
Sbjct: 374 DNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGE 407

Required for maintaining the appropriate mycolic acid composition and permeability of the envelope on its exposure to acidic pH. Catalyzes the activation of long-chain fatty acids as acyl-coenzyme A (acyl-CoA), which are then transferred to the multifunctional polyketide synthase (PKS) type III for further chain extension. It has preference for the fatty acid with long chain length in the following order: hexacosanoic acid (C26), tetracosanoic acid (C24) and palmitic acid (C16).

Mycobacterium tuberculosis (taxid: 1773)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|A8ALR6|CAIC_CITK8 Probable crotonobetaine/carnitine-CoA ligase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=caiC PE=3 SV=1

 Score =  157 bits (398), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 125/408 (30%), Positives = 188/408 (46%), Gaps = 22/408 (5%)

Query: 31  LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
            +Y+ ++E + R A+  +A+GI  GD VAL   N  EF   +  + +  A   P+NA   
Sbjct: 38  FSYASLNEEINRTANLFLASGIQKGDNVALHLDNCPEFFFCWFGLAKIGAIMVPINARLL 97

Query: 91  PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAH-SESD 149
            +E  + L +S ++L++T AE     +    + +       L+  ++ +  +++H S+  
Sbjct: 98  REESAWILQNSRAQLIVTSAEFYPMYRQILLEDDTLLNHICLIGENAPVEDNVSHFSQLK 157

Query: 150 TNAISKLTNDP----SDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDST 205
               + L   P     D A  L TSGTTSRPKGV +T  NL  +         L E D  
Sbjct: 158 DQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSSWQCALREDDVY 217

Query: 206 VIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQI 265
           + V+P FH+       +++F+AG+   L    ++SA  FW  + KY AT    +P + + 
Sbjct: 218 LTVMPAFHIDCQCTAAMAAFSAGSTFVL--IEKYSARAFWGQVRKYRATVTECIPMMIRT 275

Query: 266 VLDRHVAKPEPVYPKLR---FIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSS 322
           ++    A PE     LR   F  + S       ++R    FG  +L +Y MTE T +   
Sbjct: 276 LM-VQPASPEERQHCLREVMFYLNLSVQEKDAFIAR----FGVRLLTSYGMTE-TIVGII 329

Query: 323 NPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIR---GPNVTKGYKNNPE 378
              P D    P S+GRP    E  I DE       G  GE+CI+   G  + K Y   PE
Sbjct: 330 GDRPGDKRRWP-SIGRPGFCYEADIRDEQNRSLPAGEIGEICIKGVPGKTIFKEYYARPE 388

Query: 379 ANKSAF-LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISL 425
           A   A    GW HTGD GY D +G+ + V R   +I RGG     I L
Sbjct: 389 ATAKALEANGWLHTGDSGYRDEEGFFYFVDRRCNMIKRGGENVSCIEL 436

Could catalyze the transfer of CoA to carnitine, generating the initial carnitinyl-CoA needed for the CaiB reaction cycle.

Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) (taxid: 290338)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q65FT5|MENE_BACLD 2-succinylbenzoate--CoA ligase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=menE PE=3 SV=1

 Score =  157 bits (397), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 130/409 (31%), Positives = 191/409 (46%), Gaps = 35/409 (8%)

Query: 16  QFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAV 75
           + +  R   + G   LT+ ++    ++ A RL + G+  GD  AL   N +E VI   A 
Sbjct: 14  ELTPDRMAVIQGDHKLTFIQLFHEAKKTAGRLKSFGLKNGDTAALLLTNRMEMVIAVHAC 73

Query: 76  IRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPA---EGNAAAQAAASKLNISHATATL 132
                    LN   +  E  + +  SE+KLLLT     E +   Q A + ++I       
Sbjct: 74  FLLGVRIVLLNTKLSMAERSYQIEHSEAKLLLTEKPFIEEHRGGQPARA-VDIEDVQNAA 132

Query: 133 LDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLT-QNNLAASVS 191
               +E              I  +  D  D A  ++TSGTT RPKGV  T  N+  ++VS
Sbjct: 133 CPPVTE--------------IESIHLD--DAATIMYTSGTTGRPKGVMQTFANHYFSAVS 176

Query: 192 NIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKY 251
           +  ++  L E D  +I LPLFH+ G L+ L  S   G  V L    RF A    + +   
Sbjct: 177 SALNL-GLQEHDRWLIALPLFHISG-LSALFKSVIYGMTVVLHQ--RFDAEEVLRSIKDQ 232

Query: 252 NATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGA--PVLE 309
             T    + ++ Q +L R  AK +     LR +        P  LS LEE      PV++
Sbjct: 233 QVT----IASVVQTMLSRLAAKVDRCPGSLRCLLLGGG---PAPLSLLEECKRKRLPVVQ 285

Query: 310 AYAMTEATHLMSSNPLPEDGPHKPGSVGRPVGQEIAILDEIGVPQEGGAKGEVCIRGPNV 369
           +Y MTE    +++   PE    K GS G+P+      +++ G   + G  GE+ ++GP V
Sbjct: 286 SYGMTETCSQIATLA-PEYSIEKLGSAGKPLFASSIKIEKNGTECQPGEHGEITVKGPTV 344

Query: 370 TKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGN 418
            KGY  N  ANK +F  GWF TGDIGYFD DG+L+++ R  +LI  GG 
Sbjct: 345 MKGYLKNEAANKDSFNDGWFKTGDIGYFDDDGFLYVLDRRSDLIISGGE 393

Converts 2-succinylbenzoate (OSB) to 2-succinylbenzoyl-CoA (OSB-CoA).

Bacillus licheniformis (strain DSM 13 / ATCC 14580) (taxid: 279010)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|P94547|LCFA_BACSU Long-chain-fatty-acid--CoA ligase OS=Bacillus subtilis (strain 168) GN=lcfA PE=3 SV=1

 Score =  155 bits (393), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 130/450 (28%), Positives = 206/450 (45%), Gaps = 50/450 (11%)

Query: 5   TLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPN 64
           TL  +L     +F  K A+S  GK  LT+  I     + A+ L   G+  GD VA+  PN
Sbjct: 25  TLQSILTDSAARFPDKTAISFYGK-KLTFHDILTDALKLAAFLQCNGLQKGDRVAVMLPN 83

Query: 65  TVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLT-----PAEGNAAAQAA 119
             + VI +  V+ A       N  YT  E E+ L D++  +++T     P        + 
Sbjct: 84  CPQTVISYYGVLFAGGIVVQTNPLYTEHELEYQLRDAQVSVIITLDLLFPKAIKMKTLSI 143

Query: 120 ASKLNISHATATL-----------------LDADSEL---TLSLAHSESDTNAISKLTND 159
             ++ I+     L                 +D D      T +    +  T  ++    D
Sbjct: 144 VDQILITSVKDYLPFPKNILYPLTQKQKVHIDFDKTANIHTFASCMKQEKTELLTIPKID 203

Query: 160 PS-DVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKS-VYKLTESDSTVI-VLPLFHVHG 216
           P  D+A+  +T GTT  PKGV LT  N+ A+     + +Y + E    V+ ++P FHV+G
Sbjct: 204 PEHDIAVLQYTGGTTGAPKGVMLTHQNILANTEMCAAWMYDVKEGAEKVLGIVPFFHVYG 263

Query: 217 MLAGLLSSFAAG-AAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPE 275
           + A +  S   G   + LP   +F      + + K+  T +   PTI+ I L  H   PE
Sbjct: 264 LTAVMNYSIKLGFEMILLP---KFDPLETLKIIDKHKPTLFPGAPTIY-IGLLHH---PE 316

Query: 276 PVYPKLRFIRSC---SASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHK 332
             +  L  I+SC   SA+L   +  + E+  G  ++E Y ++EA+ +  +N +   G +K
Sbjct: 317 LQHYDLSSIKSCLSGSAALPVEVKQKFEKVTGGKLVEGYGLSEASPVTHANFI--WGKNK 374

Query: 333 PGSVGRPVGQEIAIL-----DEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFG 387
           PGS+G P     A +      E+  P E    GE+ ++GP V KGY N PE   +    G
Sbjct: 375 PGSIGCPWPSTDAAIYSEETGELAAPYE---HGEIIVKGPQVMKGYWNKPEETAAVLRDG 431

Query: 388 WFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
           W  TGD+GY D +G+ ++  R K++I  GG
Sbjct: 432 WLFTGDMGYMDEEGFFYIADRKKDIIIAGG 461

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|A9MYJ6|CAIC_SALPB Probable crotonobetaine/carnitine-CoA ligase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=caiC PE=3 SV=1

 Score =  155 bits (393), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 129/403 (32%), Positives = 182/403 (45%), Gaps = 28/403 (6%)

Query: 31  LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
            +Y+ ++E + R A+   + GI  GD VAL   N  EF+  +  + +  A   P+NA   
Sbjct: 38  FSYASLNEEINRTANLFYSLGIRKGDRVALHLDNCPEFIFCWFGLAKIGAIMVPINARLL 97

Query: 91  PDEFEFYLSDSESKLLLTPAE----GNAAAQAAASKLNISHATATLLDAD---SELTLSL 143
            +E  + L +S+  LL+T A+         Q  ++ LN        L AD   S  T   
Sbjct: 98  GEESAWILQNSQVSLLVTSAQFYPMYREIRQDNSTPLNHICLIGEQLPADDGVSHFTQRQ 157

Query: 144 AHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESD 203
           +   +       L+ D  D A  L TSGTTSRPKGV +T  NL  +         L + D
Sbjct: 158 SRQSTTLCYTPALSTD--DTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQIALRDDD 215

Query: 204 STVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIH 263
             + V+P FH+       + +F+AG+   L    ++SA  FW  + KY AT    +P + 
Sbjct: 216 VYMTVMPAFHIDCQCTAAMPAFSAGSTFVL--LEKYSARAFWDQVRKYQATVTECIPMMI 273

Query: 264 QIVLDRHVAKPEPVYPKLR---FIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLM 320
           + ++ +  A P      LR   F  + SA        R    FG  +L +Y MTE T + 
Sbjct: 274 RTLMVQPAA-PTDRQHHLREVMFYLNLSAQEKDAFTER----FGVRLLTSYGMTE-TIVG 327

Query: 321 SSNPLPEDGPHKPGSVGRPVG--QEIAILDEIGVPQEGGAKGEVCIR---GPNVTKGYKN 375
                P D    P S+GR VG   E  I D+   P   G  GE+CI+   G  + K Y  
Sbjct: 328 IIGDRPGDKRRWP-SIGR-VGFSYEAEIRDDQNRPLPAGEIGEICIKGIPGKTIFKEYYM 385

Query: 376 NPEANKSAFL-FGWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
            PEA   A    GW HTGD GY D DGY + V R   +I RGG
Sbjct: 386 QPEATARALEPEGWLHTGDSGYQDEDGYFYFVDRRCNMIKRGG 428

Could catalyze the transfer of CoA to carnitine, generating the initial carnitinyl-CoA needed for the CaiB reaction cycle.

Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) (taxid: 1016998)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	431
395146536	512	acyl CoA ligase [Linum usitatissimum]	0.958	0.806	0.832	0.0
225470747	524	PREDICTED: putative peroxisomal-coenzyme	0.967	0.795	0.824	0.0
302143864	523	unnamed protein product [Vitis vinifera]	0.967	0.797	0.824	0.0
399630432	529	4-hydroxycinnamoyl-CoA ligase 2 [Coffea	0.967	0.788	0.775	0.0
255539437	521	AMP dependent CoA ligase, putative [Rici	0.962	0.796	0.808	0.0
297819514	514	AMP-dependent synthetase and ligase fami	0.967	0.811	0.815	0.0
224137016	524	acyl:coa ligase [Populus trichocarpa] gi	0.967	0.795	0.811	0.0
16797908	523	putative acyl-CoA synthetase [Capsicum a	0.986	0.812	0.755	0.0
357458549	515	2-succinylbenzoate-CoA ligase [Medicago	0.958	0.801	0.768	0.0
15229062	514	AMP-dependent synthetase and ligase-like	0.967	0.811	0.813	0.0

>gi|395146536|gb|AFN53690.1| acyl CoA ligase [Linum usitatissimum]

 Score =  699 bits (1803), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/413 (83%), Positives = 376/413 (91%)

Query: 5   TLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPN 64
           TL GLL +V  +F  +RALSVSGKFDLT++R+ ELVERAASRLV+AGI  GDVVALTFPN
Sbjct: 6   TLTGLLKRVAGEFPDRRALSVSGKFDLTHARLDELVERAASRLVSAGIKPGDVVALTFPN 65

Query: 65  TVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLN 124
           TVEFV+MFLAVIRARATAAPLNAAYT +EFEFYLSDSESKLL+T  EGNAAA+AAASKL 
Sbjct: 66  TVEFVVMFLAVIRARATAAPLNAAYTAEEFEFYLSDSESKLLVTSREGNAAAEAAASKLQ 125

Query: 125 ISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQN 184
           ++  TA L   DSEL LSL+ SE+  N+I++L NDPSDVALFLHTSGTTSRPKGVPLTQ 
Sbjct: 126 VTQVTAGLTGEDSELILSLSPSETGDNSITQLVNDPSDVALFLHTSGTTSRPKGVPLTQL 185

Query: 185 NLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTF 244
           NLA+SV NIKSVYKLTESDSTVIVLPLFHVHG+LAGLLSSF AGAAVTLPA+GRFSAS+F
Sbjct: 186 NLASSVQNIKSVYKLTESDSTVIVLPLFHVHGLLAGLLSSFVAGAAVTLPASGRFSASSF 245

Query: 245 WQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFG 304
           WQDM+KYNATWYTAVPTIHQI+LDRH + PEPVYPKLRFIRSCSASLAP IL+RLEEAFG
Sbjct: 246 WQDMLKYNATWYTAVPTIHQIILDRHGSSPEPVYPKLRFIRSCSASLAPSILARLEEAFG 305

Query: 305 APVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPVGQEIAILDEIGVPQEGGAKGEVCI 364
           APVLEAYAMTEATHLMSSNPLPEDGPHKPGSVG+PVGQE+AILDE G  Q   +KGEVCI
Sbjct: 306 APVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGKPVGQEMAILDESGAIQGPDSKGEVCI 365

Query: 365 RGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
           RGPNVTKGYKNNP+ANK+ FLFGWFHTGDIGYFDSDGYL+LVGRIKELINRGG
Sbjct: 366 RGPNVTKGYKNNPDANKAGFLFGWFHTGDIGYFDSDGYLNLVGRIKELINRGG 418

Source: Linum usitatissimum

Species: Linum usitatissimum

Genus: Linum

Family: Linaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225470747|ref|XP_002267459.1| PREDICTED: putative peroxisomal-coenzyme A synthetase-like [Vitis vinifera]

 Score =  695 bits (1794), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/417 (82%), Positives = 381/417 (91%)

Query: 1   MEGVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVAL 60
           ME +TL GLL QV  +F S+RALSVSGKFDLTY+R+H+LVE AAS ++A G+ AGDVVAL
Sbjct: 2   MESLTLTGLLKQVAGEFPSRRALSVSGKFDLTYARLHQLVEGAASLILAGGVKAGDVVAL 61

Query: 61  TFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAA 120
           TFPNTVEFVIMFLAVIR RATAAPLN+AYT DEFEFYLSDSESKLLLT  EGN AAQAAA
Sbjct: 62  TFPNTVEFVIMFLAVIRVRATAAPLNSAYTADEFEFYLSDSESKLLLTSQEGNEAAQAAA 121

Query: 121 SKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVP 180
           SKL I+HATA+L +A++++ LSL HSE D ++++KL N+PSDVALFLHTSGTTSRPKGVP
Sbjct: 122 SKLKITHATASLTEAEAQVNLSLIHSEPDPHSVAKLVNEPSDVALFLHTSGTTSRPKGVP 181

Query: 181 LTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFS 240
           L+Q NLA+SV NIKSVYKLTESDSTVIVLPLFHVHG+LAGLLSS  AGAAVTLPAAGRFS
Sbjct: 182 LSQLNLASSVQNIKSVYKLTESDSTVIVLPLFHVHGLLAGLLSSLGAGAAVTLPAAGRFS 241

Query: 241 ASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLE 300
           ASTFW DM+KY+ATWYTAVPTIHQI+LDRH++KPEPVYPKLRFIRSCSASLAP I++RLE
Sbjct: 242 ASTFWSDMLKYDATWYTAVPTIHQIILDRHLSKPEPVYPKLRFIRSCSASLAPAIMARLE 301

Query: 301 EAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPVGQEIAILDEIGVPQEGGAKG 360
           EAFGAPVLEAYAMTEATHLM+SNPLPE+GPHKPGSVGRPVGQE+AILDE GV QE    G
Sbjct: 302 EAFGAPVLEAYAMTEATHLMASNPLPENGPHKPGSVGRPVGQEMAILDENGVQQEANVSG 361

Query: 361 EVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
           EVCIRGPNVTKGYKNNPEANKSAF FGWFHTGD+G+FD DGYLHLVGRIKELINRGG
Sbjct: 362 EVCIRGPNVTKGYKNNPEANKSAFQFGWFHTGDLGFFDPDGYLHLVGRIKELINRGG 418

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143864|emb|CBI22725.3| unnamed protein product [Vitis vinifera]

 Score =  695 bits (1793), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/417 (82%), Positives = 381/417 (91%)

Query: 1   MEGVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVAL 60
           ME +TL GLL QV  +F S+RALSVSGKFDLTY+R+H+LVE AAS ++A G+ AGDVVAL
Sbjct: 1   MESLTLTGLLKQVAGEFPSRRALSVSGKFDLTYARLHQLVEGAASLILAGGVKAGDVVAL 60

Query: 61  TFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAA 120
           TFPNTVEFVIMFLAVIR RATAAPLN+AYT DEFEFYLSDSESKLLLT  EGN AAQAAA
Sbjct: 61  TFPNTVEFVIMFLAVIRVRATAAPLNSAYTADEFEFYLSDSESKLLLTSQEGNEAAQAAA 120

Query: 121 SKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVP 180
           SKL I+HATA+L +A++++ LSL HSE D ++++KL N+PSDVALFLHTSGTTSRPKGVP
Sbjct: 121 SKLKITHATASLTEAEAQVNLSLIHSEPDPHSVAKLVNEPSDVALFLHTSGTTSRPKGVP 180

Query: 181 LTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFS 240
           L+Q NLA+SV NIKSVYKLTESDSTVIVLPLFHVHG+LAGLLSS  AGAAVTLPAAGRFS
Sbjct: 181 LSQLNLASSVQNIKSVYKLTESDSTVIVLPLFHVHGLLAGLLSSLGAGAAVTLPAAGRFS 240

Query: 241 ASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLE 300
           ASTFW DM+KY+ATWYTAVPTIHQI+LDRH++KPEPVYPKLRFIRSCSASLAP I++RLE
Sbjct: 241 ASTFWSDMLKYDATWYTAVPTIHQIILDRHLSKPEPVYPKLRFIRSCSASLAPAIMARLE 300

Query: 301 EAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPVGQEIAILDEIGVPQEGGAKG 360
           EAFGAPVLEAYAMTEATHLM+SNPLPE+GPHKPGSVGRPVGQE+AILDE GV QE    G
Sbjct: 301 EAFGAPVLEAYAMTEATHLMASNPLPENGPHKPGSVGRPVGQEMAILDENGVQQEANVSG 360

Query: 361 EVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
           EVCIRGPNVTKGYKNNPEANKSAF FGWFHTGD+G+FD DGYLHLVGRIKELINRGG
Sbjct: 361 EVCIRGPNVTKGYKNNPEANKSAFQFGWFHTGDLGFFDPDGYLHLVGRIKELINRGG 417

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|399630432|gb|AFP49809.1| 4-hydroxycinnamoyl-CoA ligase 2 [Coffea arabica]

 Score =  681 bits (1757), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/423 (77%), Positives = 369/423 (87%), Gaps = 6/423 (1%)

Query: 1   MEGVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVAL 60
           ME +TL GLL +V  +F S+RA+SV G+FDL+++R+H+LVER A+RLVAAG+  GDV+AL
Sbjct: 1   MENLTLSGLLIKVAAKFPSRRAISVPGRFDLSHARLHQLVERTATRLVAAGVQPGDVIAL 60

Query: 61  TFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAA 120
           TFPN+VEFVI FLAVIRARATAAPLN AYT DEF+FYLSDS+SK+LLT  +G+A AQAAA
Sbjct: 61  TFPNSVEFVIAFLAVIRARATAAPLNPAYTADEFQFYLSDSDSKILLTSKQGSAPAQAAA 120

Query: 121 SKLNISHATATLLDADSELTLSLAHS------ESDTNAISKLTNDPSDVALFLHTSGTTS 174
           SKLNI H T  L DADS++ LS + S      E D N  SKL NDPSD++LFLHTSGTTS
Sbjct: 121 SKLNIPHVTVALPDADSDVALSSSLSQYESDPEPDPNLSSKLINDPSDISLFLHTSGTTS 180

Query: 175 RPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLP 234
           RPKGVPLTQ NL +SV+NIKSVY++TESDSTVIVLPLFHVHG+LAGLLSS  AG AVTLP
Sbjct: 181 RPKGVPLTQLNLVSSVNNIKSVYRITESDSTVIVLPLFHVHGLLAGLLSSVGAGGAVTLP 240

Query: 235 AAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPV 294
           AAGRFSASTFW DM  YNATWYTAVPTIHQI+LDRH+  PEPVYP+LRFIRSCSA+LAP 
Sbjct: 241 AAGRFSASTFWSDMKNYNATWYTAVPTIHQIILDRHLNSPEPVYPRLRFIRSCSAALAPS 300

Query: 295 ILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPVGQEIAILDEIGVPQ 354
           IL+RLEEAFGAPVLEAYAMTEA+HLM+SNPLP+DGPH PGSVG+PVGQE+AILDE G PQ
Sbjct: 301 ILARLEEAFGAPVLEAYAMTEASHLMASNPLPQDGPHVPGSVGKPVGQEMAILDENGKPQ 360

Query: 355 EGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELIN 414
           E  A GEVCIRGPNVTKGYKNNPEANKSAF FGWFHTGD+GY DSDGYLHLVGRIKELIN
Sbjct: 361 EANANGEVCIRGPNVTKGYKNNPEANKSAFQFGWFHTGDLGYLDSDGYLHLVGRIKELIN 420

Query: 415 RGG 417
           RGG
Sbjct: 421 RGG 423

Source: Coffea arabica

Species: Coffea arabica

Genus: Coffea

Family: Rubiaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539437|ref|XP_002510783.1| AMP dependent CoA ligase, putative [Ricinus communis] gi|223549898|gb|EEF51385.1| AMP dependent CoA ligase, putative [Ricinus communis]

 Score =  669 bits (1725), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/417 (80%), Positives = 376/417 (90%), Gaps = 2/417 (0%)

Query: 1   MEGVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVAL 60
           M+ +TL GLL +V  +F   RA+SVSGKFDL++S+++ELV++AASRLVAAGI   DVVAL
Sbjct: 1   MDSLTLTGLLKRVALEFPDNRAVSVSGKFDLSHSQLNELVDQAASRLVAAGIKPSDVVAL 60

Query: 61  TFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAA 120
           TFPNTVEF+I+FLAVIR RATAAPLNAAYT +EFEFYLSDSESKLLLTP EGN++AQ+AA
Sbjct: 61  TFPNTVEFIILFLAVIRVRATAAPLNAAYTTEEFEFYLSDSESKLLLTPLEGNSSAQSAA 120

Query: 121 SKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVP 180
           SKLNI HATA L  ADSEL+LSL   ESD N++S+LT++PSDVALFLHTSGTTSRPKGVP
Sbjct: 121 SKLNIPHATAVLPAADSELSLSLP--ESDFNSLSQLTDEPSDVALFLHTSGTTSRPKGVP 178

Query: 181 LTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFS 240
           LTQ NLA+SV NIK+VYKLTESDSTVIVLPLFHVHG++AGLLSS AAGAAV LPAAGRFS
Sbjct: 179 LTQLNLASSVRNIKAVYKLTESDSTVIVLPLFHVHGLVAGLLSSLAAGAAVALPAAGRFS 238

Query: 241 ASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLE 300
           ASTFW+DM+KY+ATWYTAVPTIHQI+LDRH+  PE  YPKLRFIRSCSASLAP IL RLE
Sbjct: 239 ASTFWKDMVKYSATWYTAVPTIHQIILDRHLNNPEADYPKLRFIRSCSASLAPAILDRLE 298

Query: 301 EAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPVGQEIAILDEIGVPQEGGAKG 360
           E FGAPVLEAYAMTEATHLMSSNPLPEDGPHK GSVG+PVGQE+AILDE GV Q+  A G
Sbjct: 299 ENFGAPVLEAYAMTEATHLMSSNPLPEDGPHKAGSVGKPVGQEMAILDENGVAQKANASG 358

Query: 361 EVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
           EVCIRGPNVTKGYKNNPEANK+AF FGWFHTGD+GY +SDGYLHLVGRIKELINRGG
Sbjct: 359 EVCIRGPNVTKGYKNNPEANKAAFQFGWFHTGDLGYLNSDGYLHLVGRIKELINRGG 415

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297819514|ref|XP_002877640.1| AMP-dependent synthetase and ligase family protein [Arabidopsis lyrata subsp. lyrata] gi|297323478|gb|EFH53899.1| AMP-dependent synthetase and ligase family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  667 bits (1722), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/418 (81%), Positives = 371/418 (88%), Gaps = 1/418 (0%)

Query: 1   MEGVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLV-AAGINAGDVVA 59
           M+  TL GLL  V  +F  +RALSVSGKFDLT++R+H+L+ERAASRLV AAGI  GDVVA
Sbjct: 1   MDSDTLTGLLENVARKFPDRRALSVSGKFDLTHARLHDLIERAASRLVSAAGIKPGDVVA 60

Query: 60  LTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAA 119
           LTFPNTVEFVIMFLAVIRARATAAPLN+AYT +EFEFYLSDS+SKLLLT  EGNA AQ A
Sbjct: 61  LTFPNTVEFVIMFLAVIRARATAAPLNSAYTAEEFEFYLSDSDSKLLLTAKEGNAPAQEA 120

Query: 120 ASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGV 179
           ASKL ISH TA+LLDA S+L LS+A S+S  ++ ++L N P D ALFLHTSGTTSRPKGV
Sbjct: 121 ASKLKISHVTASLLDAGSDLALSVADSDSVVDSATELVNHPDDGALFLHTSGTTSRPKGV 180

Query: 180 PLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRF 239
           PLTQ NL +SV NIK+VYKLTESDSTVIVLPLFHVHG+LAGLLSS  AGAAVTLPAAGRF
Sbjct: 181 PLTQLNLVSSVKNIKAVYKLTESDSTVIVLPLFHVHGLLAGLLSSLGAGAAVTLPAAGRF 240

Query: 240 SASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRL 299
           SA+TFW DM KYNATWYTAVPTIHQI+LDRH + PEP YPKLRFIRSCSASLAPVILSRL
Sbjct: 241 SATTFWPDMKKYNATWYTAVPTIHQIILDRHASHPEPEYPKLRFIRSCSASLAPVILSRL 300

Query: 300 EEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPVGQEIAILDEIGVPQEGGAK 359
           EEAFGAPVLEAYAMTEATHLMSSNPLPE+GPHKPGSVG+PVGQE+AIL+E G  QE   K
Sbjct: 301 EEAFGAPVLEAYAMTEATHLMSSNPLPEEGPHKPGSVGKPVGQEMAILNEKGEIQEPNNK 360

Query: 360 GEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
           GEVCIRGPNVTKGYKNNPEANK+ F FGWFHTGDIGYFDSDGYLHLVGRIKELINRGG
Sbjct: 361 GEVCIRGPNVTKGYKNNPEANKAGFEFGWFHTGDIGYFDSDGYLHLVGRIKELINRGG 418

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137016|ref|XP_002322473.1| acyl:coa ligase [Populus trichocarpa] gi|222869469|gb|EEF06600.1| acyl:coa ligase [Populus trichocarpa]

 Score =  667 bits (1722), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/418 (81%), Positives = 374/418 (89%), Gaps = 1/418 (0%)

Query: 1   MEGVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVAL 60
           M  +TL GLL +V  +F ++RA+SVSGK DLT++R+HE++ERAASRLVA+GI  GDVVAL
Sbjct: 1   MATLTLTGLLKRVAGEFPNRRAVSVSGKLDLTHARLHEIIERAASRLVASGIKPGDVVAL 60

Query: 61  TFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAA 120
           TFPNTVEFVIMFLAVIRARATAAPLNAAYT +EFEFYLSDSESKLLLT  EGN++AQAAA
Sbjct: 61  TFPNTVEFVIMFLAVIRARATAAPLNAAYTTEEFEFYLSDSESKLLLTAQEGNSSAQAAA 120

Query: 121 SKLNISHATATLLDADSELTLSLAHSESDT-NAISKLTNDPSDVALFLHTSGTTSRPKGV 179
           SKL I HATATL  ADSEL LS + +ESD  N IS+L NDPSD+ALFLHTSGTTSRPKGV
Sbjct: 121 SKLKIPHATATLSGADSELNLSPSPTESDDPNLISQLINDPSDMALFLHTSGTTSRPKGV 180

Query: 180 PLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRF 239
           PLTQ NLA+SV+NIKSVYKLTESDSTVIVLPLFHVHG+LAGLLSS AAGA+V LP+AGRF
Sbjct: 181 PLTQLNLASSVNNIKSVYKLTESDSTVIVLPLFHVHGLLAGLLSSLAAGASVALPSAGRF 240

Query: 240 SASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRL 299
           SASTFW+DM KYNATWYTAVPTIHQI+LDRH + PE VYPKLRFIRSCSASLAP IL+RL
Sbjct: 241 SASTFWKDMDKYNATWYTAVPTIHQIILDRHFSNPESVYPKLRFIRSCSASLAPAILARL 300

Query: 300 EEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPVGQEIAILDEIGVPQEGGAK 359
           EEAF  PVLEAYAMTEATHLM SNPLPEDGPHK GSVG+PVGQE+AIL+E GV Q+    
Sbjct: 301 EEAFNTPVLEAYAMTEATHLMCSNPLPEDGPHKAGSVGKPVGQEMAILNENGVIQDANVS 360

Query: 360 GEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
           GEVC+RGPNVTKGYK+NPEANK AF FGWFHTGD+GYFDSDGYLHLVGRIKELINRGG
Sbjct: 361 GEVCLRGPNVTKGYKHNPEANKVAFQFGWFHTGDLGYFDSDGYLHLVGRIKELINRGG 418

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|16797908|gb|AAL29212.1|AF354454_1 putative acyl-CoA synthetase [Capsicum annuum]

 Score =  666 bits (1719), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/425 (75%), Positives = 364/425 (85%)

Query: 1   MEGVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVAL 60
           ME +TL G L  V +++ S RA+SVSG+ D+T++R+ +LVERAAS++VAAG+  GDVVAL
Sbjct: 1   MECLTLTGFLKHVAEKYPSHRAISVSGRLDITHARLQQLVERAASQIVAAGVKPGDVVAL 60

Query: 61  TFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAA 120
           TFPNT+EFVIMFLAVIRARATAAPLN+AY  +EFEFYLSDSESKLLLT  EGN AAQAAA
Sbjct: 61  TFPNTIEFVIMFLAVIRARATAAPLNSAYMAEEFEFYLSDSESKLLLTAKEGNEAAQAAA 120

Query: 121 SKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVP 180
           SKL I   + TL   DS++  S A  ESD  ++SK+ N+PSDV LFLHTSGTTSRPKGVP
Sbjct: 121 SKLKIPRISVTLSQPDSDVAFSPAPPESDLESMSKIVNEPSDVGLFLHTSGTTSRPKGVP 180

Query: 181 LTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFS 240
           L Q NL +SV+NIKSVYKL+++DSTVIVLPLFHVHG++AGLLSS  AGAAVTLPAAGRFS
Sbjct: 181 LAQLNLLSSVNNIKSVYKLSDTDSTVIVLPLFHVHGLIAGLLSSLGAGAAVTLPAAGRFS 240

Query: 241 ASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLE 300
           ASTFW DM KYNATWYTAVPTIHQI+LDRH++KPE  YPKLRFIRSCSA+LAP +++RLE
Sbjct: 241 ASTFWSDMKKYNATWYTAVPTIHQILLDRHLSKPESDYPKLRFIRSCSAALAPSVMARLE 300

Query: 301 EAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPVGQEIAILDEIGVPQEGGAKG 360
           EAF APVLEAYAMTEATHLM+SNPLPEDGPH PGSVG+PVGQE+ IL+E G  Q   AKG
Sbjct: 301 EAFAAPVLEAYAMTEATHLMASNPLPEDGPHIPGSVGKPVGQEMGILNENGELQGPNAKG 360

Query: 361 EVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLH 420
           EVCIRGPNVTKGYKNNPEANKSAF FGWFHTGD+GY DSDGYLHLVGRIKELINRGG   
Sbjct: 361 EVCIRGPNVTKGYKNNPEANKSAFQFGWFHTGDVGYLDSDGYLHLVGRIKELINRGGEKI 420

Query: 421 ESISL 425
             I L
Sbjct: 421 SPIEL 425

Source: Capsicum annuum

Species: Capsicum annuum

Genus: Capsicum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357458549|ref|XP_003599555.1| 2-succinylbenzoate-CoA ligase [Medicago truncatula] gi|355488603|gb|AES69806.1| 2-succinylbenzoate-CoA ligase [Medicago truncatula]

 Score =  664 bits (1714), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/414 (76%), Positives = 361/414 (87%), Gaps = 1/414 (0%)

Query: 5   TLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPN 64
           TL GLL  V ++F S+RA+SV+GKFDLT+S++HELVE AA+ L++AGI   DVVALTFPN
Sbjct: 6   TLTGLLQSVAEKFPSRRAISVAGKFDLTHSQLHELVESAANHLISAGIKPNDVVALTFPN 65

Query: 65  TVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLN 124
           T+E+VIMFLAVIR RATAAPLNAAYT +EFEFYLSDSESKLLLTP EGN  AQ AA+KLN
Sbjct: 66  TIEYVIMFLAVIRVRATAAPLNAAYTSEEFEFYLSDSESKLLLTPLEGNNPAQTAATKLN 125

Query: 125 ISHATATLLDADSELTLSLAHSESDT-NAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQ 183
           I   +      + E  LS++ +++++ N++S+L N+PSDVALFLHTSGTTSRPKGVPL+Q
Sbjct: 126 IPLGSVCFNKTEEETKLSISLNQTESANSVSELINEPSDVALFLHTSGTTSRPKGVPLSQ 185

Query: 184 NNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSAST 243
           +NL +SV NI+SVY+L+E DSTVIVLPLFHVHG++AGLLSS  AG AV LPAAGRFSAST
Sbjct: 186 HNLVSSVRNIESVYRLSELDSTVIVLPLFHVHGLIAGLLSSLGAGGAVALPAAGRFSAST 245

Query: 244 FWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF 303
           FW+DMI+YNATWYTAVPTIHQI+LDRH + PEPVYPKLRFIRSCSASLAPVIL RLEEAF
Sbjct: 246 FWKDMIQYNATWYTAVPTIHQIILDRHQSNPEPVYPKLRFIRSCSASLAPVILGRLEEAF 305

Query: 304 GAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPVGQEIAILDEIGVPQEGGAKGEVC 363
           GAPVLEAYAMTEATHLM SNPLPEDGPHK GSVG+PVGQE+AILDE G   E    GEVC
Sbjct: 306 GAPVLEAYAMTEATHLMCSNPLPEDGPHKAGSVGKPVGQEMAILDESGRVLEADVNGEVC 365

Query: 364 IRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
           I+G NVTKGYKNN EANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGG
Sbjct: 366 IKGENVTKGYKNNEEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGG 419

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15229062|ref|NP_190468.1| AMP-dependent synthetase and ligase-like protein [Arabidopsis thaliana] gi|75313630|sp|Q9SMT7.1|4CLLA_ARATH RecName: Full=4-coumarate--CoA ligase-like 10; AltName: Full=4-coumarate--CoA ligase isoform 8; Short=At4CL8; AltName: Full=Adenosine monophosphate binding protein 3; Short=AtMPBP3 gi|20799715|gb|AAM28620.1|AF503762_1 adenosine monophosphate binding protein 3 AMPBP3 [Arabidopsis thaliana] gi|6522567|emb|CAB62011.1| 4-coumarate-CoA ligase-like protein [Arabidopsis thaliana] gi|15292781|gb|AAK92759.1| putative 4-coumarate-CoA ligase [Arabidopsis thaliana] gi|17065366|gb|AAL32837.1| 4-coumarate-CoA ligase-like protein [Arabidopsis thaliana] gi|21436319|gb|AAM51329.1| putative 4-coumarate-CoA ligase [Arabidopsis thaliana] gi|28059248|gb|AAO30039.1| 4-coumarate-CoA ligase-like protein [Arabidopsis thaliana] gi|332644959|gb|AEE78480.1| AMP-dependent synthetase and ligase-like protein [Arabidopsis thaliana]

 Score =  664 bits (1713), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/418 (81%), Positives = 371/418 (88%), Gaps = 1/418 (0%)

Query: 1   MEGVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVA-AGINAGDVVA 59
           M+  TL GLL  V  +F  +RALSVSGKF+LT++R+H+L+ERAASRLV+ AGI  GDVVA
Sbjct: 1   MDSDTLSGLLENVAKKFPDRRALSVSGKFNLTHARLHDLIERAASRLVSDAGIKPGDVVA 60

Query: 60  LTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAA 119
           LTFPNTVEFVIMFLAVIRARATAAPLNAAYT +EFEFYLSDS+SKLLLT  EGNA AQ A
Sbjct: 61  LTFPNTVEFVIMFLAVIRARATAAPLNAAYTAEEFEFYLSDSDSKLLLTSKEGNAPAQEA 120

Query: 120 ASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGV 179
           ASKL ISH TATLLDA S+L LS+A S+S  ++ ++L N P D ALFLHTSGTTSRPKGV
Sbjct: 121 ASKLKISHVTATLLDAGSDLVLSVADSDSVVDSATELVNHPDDGALFLHTSGTTSRPKGV 180

Query: 180 PLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRF 239
           PLTQ NLA+SV NIK+VYKLTESDSTVIVLPLFHVHG+LAGLLSS  AGAAVTLPAAGRF
Sbjct: 181 PLTQLNLASSVKNIKAVYKLTESDSTVIVLPLFHVHGLLAGLLSSLGAGAAVTLPAAGRF 240

Query: 240 SASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRL 299
           SA+TFW DM KYNATWYTAVPTIHQI+LDRH + PE  YPKLRFIRSCSASLAPVILSRL
Sbjct: 241 SATTFWPDMKKYNATWYTAVPTIHQIILDRHASHPETEYPKLRFIRSCSASLAPVILSRL 300

Query: 300 EEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPVGQEIAILDEIGVPQEGGAK 359
           EEAFGAPVLEAYAMTEATHLMSSNPLPE+GPHKPGSVG+PVGQE+AIL+E G  QE   K
Sbjct: 301 EEAFGAPVLEAYAMTEATHLMSSNPLPEEGPHKPGSVGKPVGQEMAILNEKGEIQEPNNK 360

Query: 360 GEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
           GEVCIRGPNVTKGYKNNPEANK+ F FGWFHTGDIGYFD+DGYLHLVGRIKELINRGG
Sbjct: 361 GEVCIRGPNVTKGYKNNPEANKAGFEFGWFHTGDIGYFDTDGYLHLVGRIKELINRGG 418

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	431
TAIR|locus:2101368	514	AAE3 "ACYL-ACTIVATING ENZYME 3	0.967	0.811	0.734	4.6e-160
POMBASE|SPCC1827.03c	512	SPCC1827.03c "acetyl-CoA ligas	0.925	0.779	0.454	1.5e-83
ASPGD|ASPL0000073499	506	fatD [Emericella nidulans (tax	0.946	0.806	0.436	4.7e-80
UNIPROTKB|G4N0E5	522	MGG_06199 "Peroxisomal-coenzym	0.907	0.749	0.454	2.6e-79
DICTYBASE|DDB_G0279561	542	DDB_G0279561 "AMP-dependent sy	0.642	0.511	0.503	5.2e-75
SGD|S000000426	543	PCS60 "Peroxisomal protein tha	0.600	0.476	0.513	2.3e-70
TIGR_CMR|BA_4763	563	BA_4763 "long-chain-fatty-acid	0.642	0.492	0.321	1.8e-44
TIGR_CMR|CHY_0437	556	CHY_0437 "long-chain-fatty-aci	0.624	0.483	0.318	6.8e-44
TIGR_CMR|BA_1091	510	BA_1091 "long-chain-fatty-acid	0.881	0.745	0.302	6.6e-42
TIGR_CMR|CHY_1731	546	CHY_1731 "long-chain-fatty-aci	0.941	0.743	0.301	9.6e-41

TAIR|locus:2101368 AAE3 "ACYL-ACTIVATING ENZYME 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1559 (553.9 bits), Expect = 4.6e-160, P = 4.6e-160
 Identities = 307/418 (73%), Positives = 338/418 (80%)

Query:     1 MEGVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVA-AGINAGDVVA 59
             M+  TL GLL  V  +F  +RALSVSGKF+LT++R+H+L+ERAASRLV+ AGI  GDVVA
Sbjct:     1 MDSDTLSGLLENVAKKFPDRRALSVSGKFNLTHARLHDLIERAASRLVSDAGIKPGDVVA 60

Query:    60 LTFPNTVEFVIMFLAVIRXXXXXXXXXXXYTPDEFEFYLSDSESKLLLTPAEGNXXXXXX 119
             LTFPNTVEFVIMFLAVIR           YT +EFEFYLSDS+SKLLLT  EGN      
Sbjct:    61 LTFPNTVEFVIMFLAVIRARATAAPLNAAYTAEEFEFYLSDSDSKLLLTSKEGNAPAQEA 120

Query:   120 XSKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGV 179
              SKL ISH TATLLDA S+L LS+A S+S  ++ ++L N P D ALFLHTSGTTSRPKGV
Sbjct:   121 ASKLKISHVTATLLDAGSDLVLSVADSDSVVDSATELVNHPDDGALFLHTSGTTSRPKGV 180

Query:   180 PLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMXXXXXXXXXXXXXXXXXXXGRF 239
             PLTQ NLA+SV NIK+VYKLTESDSTVIVLPLFHVHG+                   GRF
Sbjct:   181 PLTQLNLASSVKNIKAVYKLTESDSTVIVLPLFHVHGLLAGLLSSLGAGAAVTLPAAGRF 240

Query:   240 SASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRL 299
             SA+TFW DM KYNATWYTAVPTIHQI+LDRH + PE  YPKLRFIRSCSASLAPVILSRL
Sbjct:   241 SATTFWPDMKKYNATWYTAVPTIHQIILDRHASHPETEYPKLRFIRSCSASLAPVILSRL 300

Query:   300 EEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPVGQEIAILDEIGVPQEGGAK 359
             EEAFGAPVLEAYAMTEATHLMSSNPLPE+GPHKPGSVG+PVGQE+AIL+E G  QE   K
Sbjct:   301 EEAFGAPVLEAYAMTEATHLMSSNPLPEEGPHKPGSVGKPVGQEMAILNEKGEIQEPNNK 360

Query:   360 GEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
             GEVCIRGPNVTKGYKNNPEANK+ F FGWFHTGDIGYFD+DGYLHLVGRIKELINRGG
Sbjct:   361 GEVCIRGPNVTKGYKNNPEANKAGFEFGWFHTGDIGYFDTDGYLHLVGRIKELINRGG 418

GO:0005739 "mitochondrion" evidence=ISM

GO:0016208 "AMP binding" evidence=ISS

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0009507 "chloroplast" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0010030 "positive regulation of seed germination" evidence=IMP

GO:0010214 "seed coat development" evidence=IMP

GO:0033611 "oxalate catabolic process" evidence=IDA

GO:0050203 "oxalate-CoA ligase activity" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IMP

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0046482 "para-aminobenzoic acid metabolic process" evidence=RCA

POMBASE|SPCC1827.03c SPCC1827.03c "acetyl-CoA ligase (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 837 (299.7 bits), Expect = 1.5e-83, P = 1.5e-83
 Identities = 189/416 (45%), Positives = 246/416 (59%)

Query:    10 LNQVIDQFSSKRAL-SVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEF 68
             L   I   +S RAL + S   +L++S +   +     ++ + GI  GD V +  PN +EF
Sbjct:     6 LYSAIQGDASARALVAPSLNAELSFSELRIAIMDLQRQIASLGIKVGDPVNIAIPNGLEF 65

Query:    69 VIMFLAVIRXXXXXXXXXXXYTPDEFEFYLSDSESKLLLTPAEG----NXXXXXXXSKLN 124
             V+ F AV             Y   EFEFY+ D +SKL++ P EG    N        KL+
Sbjct:    66 VVAFYAVSWQRAICGPLNSNYKQSEFEFYIDDLKSKLVIVP-EGSVAANTPAVRAAKKLS 124

Query:   125 ISHATATLLDADSELTLSLAHSE-SDTNAISKL-TNDPSDVALFLHTSGTTSRPKGVPLT 182
             +  A A L        + + H E +  NA   L    P DV L LHTSGTT RPK VPLT
Sbjct:   125 V--AVAELAWCPKSRLVRIVHFEGAKINAPQPLGLPQPDDVMLVLHTSGTTGRPKVVPLT 182

Query:   183 QNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMXXXXXXXXXXXXXXXXXXXGRFSAS 242
               NL  S+ NI + Y+L   D++ +V+PLFHVHG+                    +FSA 
Sbjct:   183 HKNLCRSIHNITTSYRLDPRDTSYVVMPLFHVHGLLCGLLSTLASGGCAVVPP--KFSAH 240

Query:   243 TFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEA 302
             +FW++ I+Y ATWYTAVPTIHQI+L      P+P+ P++RFIRSCS+ LAP +LS+LE  
Sbjct:   241 SFWKEFIQYGATWYTAVPTIHQILL--RTPPPKPL-PRIRFIRSCSSPLAPPVLSKLEAT 297

Query:   303 FGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPVGQEIAILDEIGVPQEGGAKGEV 362
             F APVLEAYAMTEA+H M++NPLP    HKP SVG+P G E+ ILD+ G     G +GE+
Sbjct:   298 FRAPVLEAYAMTEASHQMTTNPLPPL-VHKPHSVGKPFGVELKILDQKGNEMPQGKEGEI 356

Query:   363 CIRGPNVTKGYKNNPEANKSAFLFG-WFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
             C+RG NVTKGY NNP ANKS+F    +F TGD G  D DGY+ + GRIKEL+NRGG
Sbjct:   357 CVRGINVTKGYLNNPAANKSSFTKDRFFRTGDEGKLDKDGYVFITGRIKELVNRGG 412

GO:0005737 "cytoplasm" evidence=ISO

GO:0005778 "peroxisomal membrane" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0006084 "acetyl-CoA metabolic process" evidence=ISS

GO:0006631 "fatty acid metabolic process" evidence=ISS

GO:0016878 "acid-thiol ligase activity" evidence=ISM

GO:0071276 "cellular response to cadmium ion" evidence=IMP

GO:0071585 "detoxification of cadmium ion" evidence=IMP

ASPGD|ASPL0000073499 fatD [Emericella nidulans (taxid:162425)]

 Score = 804 (288.1 bits), Expect = 4.7e-80, P = 4.7e-80
 Identities = 185/424 (43%), Positives = 231/424 (54%)

Query:    10 LNQVIDQFSSKRALSVSGK--FDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVE 67
             L Q      S  A+ V GK    +TY+++H  +     +L   G+  G  V L   N+ E
Sbjct:     4 LAQAFSPDGSNAAVIVPGKPALTVTYAQLHSHISAFQEKLAKLGVGHGAAVNLALINSYE 63

Query:    68 FVIMFLAVIRXXXXXXXXXXXYTPDEFEFYLSDSESKLLLTPAEG---NXXXXXXXSKLN 124
             F++ FLA              Y  DEFEFY+ D  S L+L P E    N        K  
Sbjct:    64 FIVGFLAASWQRAIAAPLNPAYKQDEFEFYIDDLSSTLVLIPRESYAQNGPAVLAGRKYQ 123

Query:   125 ISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQN 184
              + A       +  L +           I   T  P D+AL LHTSGTT RPK VPLT  
Sbjct:   124 AAIAECYWNGTEVVLDVKELGKLKGKGDIGVQTAQPDDIALVLHTSGTTGRPKAVPLTHK 183

Query:   185 NLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMXXXXXXXXXXXXXXXXXXXGRFSASTF 244
             NL  ++ NI++ YKLT  D T +V+PLFHVHG+                    +FSA  F
Sbjct:   184 NLTTTMRNIQATYKLTPQDRTYLVMPLFHVHGLLAAFLAPLASGGSVIVPT--KFSAHQF 241

Query:   245 WQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFG 304
             W D I+Y A WY+AVPTIHQI+L   +  P P+ P++RFIRSCS+ L+P     LE+   
Sbjct:   242 WSDFIEYKANWYSAVPTIHQILLKSPL--PNPI-PQIRFIRSCSSPLSPKTFQDLEKTLN 298

Query:   305 APVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPVGQEIAILDEIG--VPQEGGAKGEV 362
             APVLEAYAMTEA H M+SNPLP     +PGSVG   G EI ILD+ G  VPQ  G + E+
Sbjct:   299 APVLEAYAMTEAAHQMTSNPLPP-AKRQPGSVGIGQGVEIKILDQSGNEVPQ--GHEAEI 355

Query:   363 CIRGPNVTKGYKNNPEANKSAFLF-GWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHE 421
             C+RG NVTKGY NNP ANKS+F   G+F TGD G  D DGY+ + GRIKELIN+GG    
Sbjct:   356 CVRGENVTKGYLNNPAANKSSFTKDGFFRTGDQGKKDPDGYVIITGRIKELINKGGEKIS 415

Query:   422 SISL 425
              I L
Sbjct:   416 PIEL 419

GO:0071585 "detoxification of cadmium ion" evidence=IEA

GO:0071276 "cellular response to cadmium ion" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

UNIPROTKB|G4N0E5 MGG_06199 "Peroxisomal-coenzyme A synthetase" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 797 (285.6 bits), Expect = 2.6e-79, P = 2.6e-79
 Identities = 186/409 (45%), Positives = 240/409 (58%)

Query:    27 GKF-DLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRXXXXXXXX 85
             G F  +TY+ +   V +  ++L A GI  G  V++   N+ EF++ FLA           
Sbjct:    29 GAFLTVTYAGLVAEVSKFQAKLAAIGITQGSAVSIATVNSYEFIVSFLAASWQRGIAAPL 88

Query:    86 XXXYTPDEFEFYLSDSESKLLLTP----AEGNXXXXXXXSKLNISHATATLLDAD-SELT 140
                Y  DEFEFY+ D +S ++L P    A G+        + N + A     DA  +E+ 
Sbjct:    89 NPNYKQDEFEFYIEDVKSAIVLVPRGAFAAGSPAVKAA-KRFNAAVAEC-YWDAQKAEVA 146

Query:   141 LSLAH-SESDTNAISK-LTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYK 198
             L +    +       K L   P D AL LHTSGTTSRPK VPL+  NL  ++ NIK+ Y+
Sbjct:   147 LDVKDLGQLKGRGGQKVLEPQPEDTALVLHTSGTTSRPKVVPLSHRNLTRTMDNIKNTYQ 206

Query:   199 LTESDSTVIVLPLFHVHGMXXXXXXXXXXXXXXXXXXXGRFSASTFWQDMIKYNATWYTA 258
             LT +D T++V+PLFHVHG+                    +FSAS FW+D +++ A WYTA
Sbjct:   207 LTPADRTMLVMPLFHVHGLLCGLLAPFYTGGSMVVPT--KFSASDFWRDFVQHGANWYTA 264

Query:   259 VPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATH 318
             VPTIHQI+L ++ A P P+ PK+RFIRSCS+ L+P + S+LEE FGAPVLEAYAMTEA H
Sbjct:   265 VPTIHQILL-KNPA-PSPL-PKIRFIRSCSSPLSPTVFSQLEEKFGAPVLEAYAMTEAAH 321

Query:   319 LMSSNPLPEDGPHKPGSVGRPVGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPE 378
              M+SNPLP     KPGSVG   G E+ ILD  G     G +GE+CIRG NVT GY NN E
Sbjct:   322 QMTSNPLPP-AKRKPGSVGIGQGVEVRILDGDGNELPRGVEGEICIRGENVTSGYLNNAE 380

Query:   379 ANKSAFLFG-WFHTGDIGYFD-SDGYLHLVGRIKELINRGGNLHESISL 425
             AN SAF  G +F TGD G  D  DGY+ + GRIKELIN+ G     I L
Sbjct:   381 ANASAFTKGGFFRTGDQGKIDPEDGYVTITGRIKELINKAGEKISPIEL 429

GO:0005575 "cellular_component" evidence=ND

DICTYBASE|DDB_G0279561 DDB_G0279561 "AMP-dependent synthetase and ligase domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 685 (246.2 bits), Expect = 5.2e-75, Sum P(2) = 5.2e-75
 Identities = 144/286 (50%), Positives = 182/286 (63%)

Query:   137 SELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSV 196
             S  T+S    E D   +  +  D  D ALFLHTSG+T RPKGVPLT  NLA S +NI S 
Sbjct:   163 SSETIS-GEDEGDKIKLETVP-DKDDKALFLHTSGSTGRPKGVPLTHENLATSSANISST 220

Query:   197 YKLTESDSTVIVLPLFHVHGMXXXXXXXXXXXXXXXXXXXGRFSASTFWQDMIKYNATWY 256
             + LT SD + +V+PLFHVHG+                    RFSAS FW  + +++  WY
Sbjct:   221 FHLTPSDCSYVVMPLFHVHGLIGVCLSTFNAGASLVVPP--RFSASVFWSQVKQFSVNWY 278

Query:   257 TAVPTIHQIV--LDRHVAKPEPVYPK--LRFIRSCSASLAPVILSRLEEAFGAPVLEAYA 312
             +AVPTIH I+  +++          K  LRFIRS S+SL+P +L  LE+ FG PV+E+Y 
Sbjct:   279 SAVPTIHTILCNVEQSATSSASSSNKGLLRFIRSSSSSLSPTLLETLEQFFGCPVIESYG 338

Query:   313 MTEATHLMSSNPLPEDGPHKPGSVGRPVGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKG 372
             MTEA+H M+SNPLP+DGP KPGSVG+    +I+I+++ G  Q+ G  GEVCI+G NV  G
Sbjct:   339 MTEASHQMASNPLPQDGPRKPGSVGKGFNVQISIVNDNGEHQKQGDVGEVCIKGKNVMHG 398

Query:   373 YKNNPEANKSAFLF-GWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
             Y NNP+AN   F   GWF TGDIGY D DGYL L GR KE+INRGG
Sbjct:   399 YHNNPQANIDNFTKDGWFLTGDIGYLDQDGYLILKGRKKEIINRGG 444

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

SGD|S000000426 PCS60 "Peroxisomal protein that binds AMP and mRNA" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 644 (231.8 bits), Expect = 2.3e-70, Sum P(2) = 2.3e-70
 Identities = 137/267 (51%), Positives = 165/267 (61%)

Query:   161 SDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMXXX 220
             SDVAL LHTSGTTS PK VPL   N+  S  NI + YKLT  D + +V+PLFHVHG+   
Sbjct:   189 SDVALILHTSGTTSTPKTVPLLHLNIVRSTLNIANTYKLTPLDRSYVVMPLFHVHGLIGV 248

Query:   221 XXXXXXXXXXXXXXXXGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPK 280
                               F    FW   +KYN  W++ VPTI  I+L+  + KP P +P 
Sbjct:   249 LLSTFRTQGSVVVPDG--FHPKLFWDQFVKYNCNWFSCVPTISMIMLN--MPKPNP-FPH 303

Query:   281 LRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV 340
             +RFIRSCS++LAP    +LE+ F APVLEAYAMTEA+H M+SN LP  G  KPG+VG+P 
Sbjct:   304 IRFIRSCSSALAPATFHKLEKEFNAPVLEAYAMTEASHQMTSNNLPP-GKRKPGTVGQPQ 362

Query:   341 GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF--GWFHTGDIGYFD 398
             G  + ILD+       G  GEV IRG NVT GY NNP+ANK  F     +F TGD GYFD
Sbjct:   363 GVTVVILDDNDNVLPPGKVGEVSIRGENVTLGYANNPKANKENFTKRENYFRTGDQGYFD 422

Query:   399 SDGYLHLVGRIKELINRGGNLHESISL 425
              +G+L L GRIKELINRGG     I L
Sbjct:   423 PEGFLVLTGRIKELINRGGEKISPIEL 449

GO:0005782 "peroxisomal matrix" evidence=IEA;IDA

GO:0016208 "AMP binding" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0005778 "peroxisomal membrane" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0016021 "integral to membrane" evidence=ISM

GO:0016874 "ligase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0005777 "peroxisome" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0003729 "mRNA binding" evidence=IDA

GO:0003824 "catalytic activity" evidence=IEA

TIGR_CMR|BA_4763 BA_4763 "long-chain-fatty-acid--CoA ligase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 356 (130.4 bits), Expect = 1.8e-44, Sum P(2) = 1.8e-44
 Identities = 93/289 (32%), Positives = 145/289 (50%)

Query:   135 ADSELTLSLAHS-ESDTNAISKLTNDP-SDVALFLHTSGTTSRPKGVPLTQNNLAAS-VS 191
             ++SE T+ L +S E + N   ++  DP +D+AL  +T GTT  PKGV LT  NL ++ + 
Sbjct:   179 SESE-TIHLWNSVEKEVNTGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLM 237

Query:   192 NIKSVYKLTESDSTVI-VLPLFHVHGMXXXXXXXXXXXXXXXXXXXGRFSASTFWQDMIK 250
              ++ +Y   E +  V+ VLP FHV+GM                    +F     ++ + K
Sbjct:   238 GVQWLYNCKEGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIP--KFDMKMVFEAIKK 295

Query:   251 YNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEA 310
             +  T +   PTI+  +L+  + K   +   +R   S SA L   +  + E   G  ++E 
Sbjct:   296 HKVTLFPGAPTIYIALLNSPLLKEYDI-SSIRACISGSAPLPVEVQEKFETVTGGKLVEG 354

Query:   311 YAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILD-EIGVPQEGGAKGEVCIRGPN 368
             Y +TE++ +  SN L E     PGS+G P    E  I+  E G     G  GE+ ++GP 
Sbjct:   355 YGLTESSPVTHSNFLWEK--RVPGSIGVPWPDTEAMIMSLETGEALRPGEIGEIVVKGPQ 412

Query:   369 VTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
             + KGY N PE   +    GW HTGD+GY D DG+ ++  R K++I   G
Sbjct:   413 IMKGYWNKPEETAAVLQDGWLHTGDVGYMDEDGFFYVKDRKKDMIVASG 461

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=ISS

GO:0006631 "fatty acid metabolic process" evidence=ISS

TIGR_CMR|CHY_0437 CHY_0437 "long-chain-fatty-acid--CoA ligase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 367 (134.2 bits), Expect = 6.8e-44, Sum P(2) = 6.8e-44
 Identities = 89/279 (31%), Positives = 138/279 (49%)

Query:   147 ESDTNAISKLTNDPS-DVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDST 205
             +S    ++K+T +P  D+A+  +T GTT   KGV LT  NL A+   + +   +  S   
Sbjct:   193 KSPPQPLAKITINPEEDLAVLQYTGGTTGISKGVMLTHRNLIANAMQVNAWDPVRSSQDI 252

Query:   206 VI-VLPLFHVHGMXXXXXXXXXXXXXXXXXXXGRFSASTFWQDMIKYNATWYTAVPTIHQ 264
             ++ V+P FHV+G+                    RF+     + ++KY  T +   PTI+ 
Sbjct:   253 ILAVMPFFHVYGLSVALNLAVLTGATLLIMP--RFNVDEMLKTIVKYRPTLFPGAPTIYV 310

Query:   265 IVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNP 324
              +++    K   +   +R   S SA L   +  + EE  G  ++E Y +TE++ +   NP
Sbjct:   311 AIINHPRIKDYDI-TSIRLCISGSAPLPVEVKKKFEEITGGRIVEGYGLTESSPVTHCNP 369

Query:   325 LPEDGPHKPGSVGRPVGQEIAILDEIGV--PQEGGAKGEVCIRGPNVTKGYKNNPEANKS 382
             +      KPGSVG P+   + ++ E     P   G  GEV ++GP V KGY N PE    
Sbjct:   370 V--HSLEKPGSVGLPLSDTLCMVVEPDTLNPVAIGEVGEVAVKGPQVMKGYWNRPEETAL 427

Query:   383 AFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGG-NLH 420
                 GW  TGD+G  D DGYL++V R K+LI  GG N++
Sbjct:   428 VLKEGWLLTGDLGRMDEDGYLYIVDRKKDLIISGGYNIY 466

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=ISS

GO:0006631 "fatty acid metabolic process" evidence=ISS

TIGR_CMR|BA_1091 BA_1091 "long-chain-fatty-acid--CoA ligase, putative" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 444 (161.4 bits), Expect = 6.6e-42, P = 6.6e-42
 Identities = 120/397 (30%), Positives = 185/397 (46%)

Query:    31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRXXXXXXXXXXXYT 90
             ++Y +++++V R +S L   GI  GD VAL   N+  F++     ++           YT
Sbjct:    27 VSYDQLNKMVTRFSSNLAEMGIGKGDNVALVVGNSPHFLVGLYGTMKAGATVIPVNPIYT 86

Query:    91 PDEFEFYLSDSESK------LLLTPAEGNXXXXXXXSKLNISHATATLLDADSEL--TLS 142
              DE  + L + + K      +LL   +           + I   ++     ++E   T +
Sbjct:    87 ADEMHYILQNGDVKTIIVLDVLLPVIQSLTTRLPSLENIIICETSSDFNHTETEKMKTFT 146

Query:   143 LAHSESD-TNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTE 201
                   D T    +L  D  DVA+ L+TSGTT +PKG  LT  NL ++ S++ S  + T 
Sbjct:   147 RMIGAGDLTYEGPEL--DEEDVAVILYTSGTTGKPKGAMLTHKNLYSNASDVASYLQYTA 204

Query:   202 SDSTVIVLPLFHVHGMXXXXXXXXXXXXXXXXXXXGRFSASTFWQDMIKYNATWYTAVPT 261
              D  V  LP+FHV  +                    +FS    ++    Y  T +  VPT
Sbjct:   205 DDRVVAALPMFHVFCLTVAVNAPIVNGATILMLP--KFSPKEVFRICRTYEPTIFAGVPT 262

Query:   262 IHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMS 321
             ++  +     A  E V   LR   S  AS+   +L   E+ F   V E Y ++EA+ +  
Sbjct:   263 MYNYLYLFEEASAEDV-KTLRLCISGGASMPVALLQNFEKRFDVIVSEGYGLSEASPVTC 321

Query:   322 SNPLPEDGPHKPGSVGRPVGQ-EIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEAN 380
              NPL  D P KPGS+G  +   E  I++E+G     GA GE+ +RGPNV KGY N PE  
Sbjct:   322 FNPL--DRPRKPGSIGTNIWHVENKIVNELGEEVPVGAVGELIVRGPNVMKGYYNAPEDT 379

Query:   381 KSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
              +    GW +TGD+   D +GY ++V R K+++  GG
Sbjct:   380 AATLKDGWLYTGDLAKMDEEGYFYIVDRKKDIVLVGG 416

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=ISS

GO:0006631 "fatty acid metabolic process" evidence=ISS

TIGR_CMR|CHY_1731 CHY_1731 "long-chain-fatty-acid--CoA ligase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
 Identities = 131/434 (30%), Positives = 202/434 (46%)

Query:     5 TLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPN 64
             TL  L  +  +++    A    G+ ++TY  + E ++R  + L   GI  GD VA+  PN
Sbjct:    28 TLHELFWETTEKYPGLIATVFLGQ-EMTYKELGEKIKRFTNALSKLGIKKGDRVAVMLPN 86

Query:    65 TVEFVIMFLAVIRXXXXXXXXXXXYTPDEFEFYLSDS--ESKLLLTPAEGNXXXXXXXSK 122
               EFVI + A++            Y   E E+ L+DS  E+ +LL             + 
Sbjct:    87 CPEFVISYFAILTLGGIVVQTNPMYVERELEYQLNDSGAETIILLDVLYPRANAVKGNTA 146

Query:   123 L-NISHATATLLDA-DSELTLSLAH-----SESDTNAISKLTNDPSDVALFLHTSGTTSR 175
             L N+      L+     E    +       S+S+ N   ++T  P DVA+  +T GTT  
Sbjct:   147 LKNLIVVNIPLIGTYPGEFGPGVYKFNDLISDSEPNP-PEVTVTPDDVAVLQYTGGTTGI 205

Query:   176 PKGVPLTQNNLAASVSNIKSVYK---LTESDSTVIVLPLFHVHGMXXXXXXXXXXXXXXX 232
              KG  LT  NL A+V  ++           +  +  LPLFHV+GM               
Sbjct:   206 SKGAMLTHKNLVANVYQVREFSNGIFFDGQERILTALPLFHVYGMTCCMNLATCFGGTMI 265

Query:   233 XXXXGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLA 292
                  +F A+   Q + +Y  T +   PT++  +L+ H   P+     LR I  C +  A
Sbjct:   266 LIP--KFDATLLLQHIQRYRPTSFPGAPTMYVALLN-H---PDLTKYDLRSINVCVSGSA 319

Query:   293 PV---ILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPVGQEIA-ILD 348
             P+   + ++ EE  GA V+E Y ++EA+ +   NP+   G  K GS+G P    IA I+D
Sbjct:   320 PLPVEVQTKFEEVTGAVVVEGYGLSEASPVTHCNPIR--GTRKIGSIGVPYSDTIAKIVD 377

Query:   349 -EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVG 407
              E G     G  GE+ ++GP V KGY N PE   +A   GW +TGD+   D DG+ ++V 
Sbjct:   378 IETGEELPPGQIGELVVKGPQVMKGYWNRPEETANALKDGWLYTGDLAKMDEDGFFYIVD 437

Query:   408 RIKELINRGG-NLH 420
             R K++I  GG N++
Sbjct:   438 RKKDMIIAGGYNIY 451

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=ISS

GO:0006631 "fatty acid metabolic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SMT7	4CLLA_ARATH	6, ., 2, ., 1, ., -	0.8133	0.9675	0.8112	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.2.1	LOW CONFIDENCE prediction!
4th Layer	6.2.1.7	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00009148001 SubName- Full=Chromosome undetermined scaffold_222, whole genome shotgun sequence; (523 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	431
cd05926	345	cd05926, FACL_fum10p_like, Subfamily of fatty acid	1e-149
COG0318	534	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/	1e-114
pfam00501	412	pfam00501, AMP-binding, AMP-binding enzyme	1e-105
cd05936	468	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain	1e-103
PRK05852	534	PRK05852, PRK05852, acyl-CoA synthetase; Validated	4e-98
PRK06187	521	PRK06187, PRK06187, long-chain-fatty-acid--CoA lig	1e-82
PRK07656	513	PRK07656, PRK07656, long-chain-fatty-acid--CoA lig	2e-82
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	7e-81
cd05904	504	cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)	3e-79
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	1e-78
cd05911	487	cd05911, Firefly_Luc_like, Firefly luciferase of l	3e-77
cd04433	338	cd04433, AFD_class_I, Adenylate forming domain, Cl	3e-77
cd05917	347	cd05917, FACL_like_2, Uncharacterized subfamily of	2e-74
cd05907	456	cd05907, VL_LC_FACS_like, Long-chain fatty acid Co	2e-73
cd05903	437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	2e-70
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	4e-70
cd05929	342	cd05929, BACL_like, Bacterial Bile acid CoA ligase	3e-68
PRK07514	504	PRK07514, PRK07514, malonyl-CoA synthase; Validate	1e-63
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	3e-61
PRK05605	573	PRK05605, PRK05605, long-chain-fatty-acid--CoA lig	4e-61
cd05959	506	cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and	3e-60
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	2e-59
PRK07529	632	PRK07529, PRK07529, AMP-binding domain protein; Va	9e-59
PRK03640	483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	3e-58
COG1022	613	COG1022, FAA1, Long-chain acyl-CoA synthetases (AM	3e-58
PRK06839	496	PRK06839, PRK06839, acyl-CoA synthetase; Validated	3e-58
cd05920	483	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l	2e-57
COG0365	528	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat	3e-57
PLN02246	537	PLN02246, PLN02246, 4-coumarate--CoA ligase	1e-55
cd05931	547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	5e-55
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	1e-53
cd05944	359	cd05944, FACL_like_4, Uncharacterized subfamily of	2e-52
TIGR01923	436	TIGR01923, menE, O-succinylbenzoate-CoA ligase	7e-52
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	1e-51
PRK06087	547	PRK06087, PRK06087, short chain acyl-CoA synthetas	6e-51
PRK06710	563	PRK06710, PRK06710, long-chain-fatty-acid--CoA lig	7e-51
PRK07786	542	PRK07786, PRK07786, long-chain-fatty-acid--CoA lig	1e-49
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	4e-49
PRK06145	497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	4e-49
PRK07787	471	PRK07787, PRK07787, acyl-CoA synthetase; Validated	4e-49
cd05922	350	cd05922, FACL_like_6, Uncharacterized subfamily of	6e-49
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	7e-49
cd12119	517	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth	8e-49
TIGR01733	409	TIGR01733, AA-adenyl-dom, amino acid adenylation d	3e-48
cd05932	504	cd05932, LC_FACS_bac, Bacterial long-chain fatty a	4e-48
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	5e-48
cd05927	539	cd05927, LC-FACS_euk, Eukaryotic long-chain fatty	1e-46
PRK13295	547	PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig	9e-46
TIGR03205	541	TIGR03205, pimA, dicarboxylate--CoA ligase PimA	4e-44
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	6e-44
cd05909	489	cd05909, AAS_C, C-terminal domain of the acyl-acyl	7e-44
PRK12583	558	PRK12583, PRK12583, acyl-CoA synthetase; Provision	9e-43
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	4e-42
PRK06155	542	PRK06155, PRK06155, crotonobetaine/carnitine-CoA l	1e-41
TIGR03208	538	TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate	2e-41
PRK12406	509	PRK12406, PRK12406, long-chain-fatty-acid--CoA lig	2e-41
COG1021	542	COG1021, EntE, Peptide arylation enzymes [Secondar	3e-41
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	3e-41
PRK08276	502	PRK08276, PRK08276, long-chain-fatty-acid--CoA lig	9e-41
TIGR03098	517	TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form	1e-40
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	3e-40
TIGR02275	526	TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP	4e-40
cd05973	440	cd05973, MACS_like_2, Uncharacterized subfamily of	9e-40
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	1e-39
PRK09088	488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	1e-38
cd05969	443	cd05969, MACS_like_4, Uncharacterized subfamily of	2e-38
cd05930	445	cd05930, A_NRPS, The adenylation domain of nonribo	5e-38
PRK07059	557	PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig	6e-38
cd05940	444	cd05940, FATP_FACS, Fatty acid transport proteins	1e-37
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	2e-37
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	3e-37
cd05906	560	cd05906, A_NRPS_TubE_like, The adenylation domain	3e-36
COG1020	642	COG1020, EntF, Non-ribosomal peptide synthetase mo	4e-36
cd05918	447	cd05918, A_NRPS_SidN3_like, The adenylation (A) do	4e-36
PRK08751	560	PRK08751, PRK08751, putative long-chain fatty acyl	6e-36
PRK08974	560	PRK08974, PRK08974, long-chain-fatty-acid--CoA lig	1e-35
TIGR02262	508	TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil	3e-35
PRK04319	570	PRK04319, PRK04319, acetyl-CoA synthetase; Provisi	3e-35
PLN02330	546	PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1	4e-35
PRK05677	562	PRK05677, PRK05677, long-chain-fatty-acid--CoA lig	6e-35
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	9e-34
PRK07867	529	PRK07867, PRK07867, acyl-CoA synthetase; Validated	9e-33
cd12114	476	cd12114, A_NRPS_TlmIV_like, The adenylation domain	4e-32
cd05970	537	cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s	4e-32
PRK07788	549	PRK07788, PRK07788, acyl-CoA synthetase; Validated	6e-31
PRK10946	536	PRK10946, entE, enterobactin synthase subunit E; P	1e-30
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	6e-30
PRK06164	540	PRK06164, PRK06164, acyl-CoA synthetase; Validated	7e-30
PRK08162	545	PRK08162, PRK08162, acyl-CoA synthetase; Validated	8e-30
PRK09192	579	PRK09192, PRK09192, acyl-CoA synthetase; Validated	2e-29
PLN02860	563	PLN02860, PLN02860, o-succinylbenzoate-CoA ligase	3e-29
PRK08279	600	PRK08279, PRK08279, long-chain-acyl-CoA synthetase	3e-29
PLN02736	651	PLN02736, PLN02736, long-chain acyl-CoA synthetase	3e-29
cd05923	495	cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)	4e-29
cd05967	607	cd05967, PrpE, Propionyl-CoA synthetase (PrpE)	4e-29
PRK13388	540	PRK13388, PRK13388, acyl-CoA synthetase; Provision	4e-29
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	5e-29
cd05914	448	cd05914, FACL_like_3, Uncharacterized subfamily of	6e-29
cd05908	499	cd05908, A_NRPS_MycA_like, The adenylation domain	3e-28
PLN03102	579	PLN03102, PLN03102, acyl-activating enzyme; Provis	4e-28
PRK06018	542	PRK06018, PRK06018, putative acyl-CoA synthetase;	7e-28
PRK12492	562	PRK12492, PRK12492, long-chain-fatty-acid--CoA lig	9e-28
cd05974	433	cd05974, MACS_like_1, Uncharacterized subfamily of	1e-27
cd05910	455	cd05910, FACL_like_1, Uncharacterized subfamily of	5e-27
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	1e-26
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	1e-26
PRK07768	545	PRK07768, PRK07768, long-chain-fatty-acid--CoA lig	6e-26
cd05921	559	cd05921, FCS, Feruloyl-CoA synthetase (FCS)	5e-25
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	1e-24
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	1e-24
cd12115	449	cd12115, A_NRPS_Sfm_like, The adenylation domain o	3e-24
PRK07008	539	PRK07008, PRK07008, long-chain-fatty-acid--CoA lig	7e-24
PRK13390	501	PRK13390, PRK13390, acyl-CoA synthetase; Provision	7e-24
PRK13391	511	PRK13391, PRK13391, acyl-CoA synthetase; Provision	1e-23
PLN02479	567	PLN02479, PLN02479, acetate-CoA ligase	2e-23
cd05928	530	cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co	2e-23
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	6e-23
PRK06334	539	PRK06334, PRK06334, long chain fatty acid--[acyl-c	9e-23
cd05933	594	cd05933, ACSBG_like, Bubblegum-like very long-chai	1e-22
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	2e-22
PRK08043	718	PRK08043, PRK08043, bifunctional acyl-[acyl carrie	3e-22
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	5e-22
cd05966	602	cd05966, ACS, Acetyl-CoA synthetase (also known as	9e-22
PRK13382	537	PRK13382, PRK13382, acyl-CoA synthetase; Provision	1e-21
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	2e-21
cd05937	468	cd05937, FATP_chFAT1_like, Uncharacterized subfami	3e-21
cd05968	474	cd05968, AACS_like, Uncharacterized acyl-CoA synth	6e-21
PLN02387	696	PLN02387, PLN02387, long-chain-fatty-acid-CoA liga	8e-21
PRK07798	533	PRK07798, PRK07798, acyl-CoA synthetase; Validated	1e-20
PRK10252	1296	PRK10252, entF, enterobactin synthase subunit F; P	3e-20
PRK13383	516	PRK13383, PRK13383, acyl-CoA synthetase; Provision	6e-20
PRK08180	614	PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe	7e-20
TIGR02188	625	TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase	8e-20
PTZ00216	700	PTZ00216, PTZ00216, acyl-CoA synthetase; Provision	2e-19
cd05938	535	cd05938, hsFATP2a_ACSVL_like, Fatty acid transport	1e-18
TIGR01734	502	TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho	2e-18
PRK09274	552	PRK09274, PRK09274, peptide synthase; Provisional	2e-18
PLN02861	660	PLN02861, PLN02861, long-chain-fatty-acid-CoA liga	3e-18
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	4e-18
PRK07638	487	PRK07638, PRK07638, acyl-CoA synthetase; Validated	4e-18
cd05958	487	cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)	5e-18
PRK06814	1140	PRK06814, PRK06814, acylglycerophosphoethanolamine	3e-17
PLN02654	666	PLN02654, PLN02654, acetate-CoA ligase	8e-17
PRK12582	624	PRK12582, PRK12582, acyl-CoA synthetase; Provision	8e-17
PLN02614	666	PLN02614, PLN02614, long-chain acyl-CoA synthetase	3e-16
PRK09029	458	PRK09029, PRK09029, O-succinylbenzoic acid--CoA li	7e-16
cd05939	474	cd05939, hsFATP4_like, Fatty acid transport protei	9e-16
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	1e-15
PLN02430	660	PLN02430, PLN02430, long-chain-fatty-acid-CoA liga	2e-15
PRK05851	525	PRK05851, PRK05851, long-chain-fatty-acid--[acyl-c	6e-15
PRK06060	705	PRK06060, PRK06060, acyl-CoA synthetase; Validated	8e-15
PRK12476	612	PRK12476, PRK12476, putative fatty-acid--CoA ligas	9e-15
PRK04813	503	PRK04813, PRK04813, D-alanine--poly(phosphoribitol	2e-14
cd05915	509	cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase	4e-14
PRK05620	576	PRK05620, PRK05620, long-chain-fatty-acid--CoA lig	1e-13
PRK10524	629	PRK10524, prpE, propionyl-CoA synthetase; Provisio	1e-12
PRK07769	631	PRK07769, PRK07769, long-chain-fatty-acid--CoA lig	2e-12
TIGR02316	628	TIGR02316, propion_prpE, propionate--CoA ligase	3e-12
PRK07445	452	PRK07445, PRK07445, O-succinylbenzoic acid--CoA li	8e-12
PRK05857	540	PRK05857, PRK05857, acyl-CoA synthetase; Validated	1e-10
PRK07824	358	PRK07824, PRK07824, O-succinylbenzoic acid--CoA li	1e-10
PRK00174	637	PRK00174, PRK00174, acetyl-CoA synthetase; Provisi	1e-07
cd05924	365	cd05924, FACL_like_5, Uncharacterized subfamily of	2e-07
PRK05850	578	PRK05850, PRK05850, acyl-CoA synthetase; Validated	2e-07
PRK05850	578	PRK05850, PRK05850, acyl-CoA synthetase; Validated	2e-06
PRK00174	637	PRK00174, PRK00174, acetyl-CoA synthetase; Provisi	1e-05
PRK03584	655	PRK03584, PRK03584, acetoacetyl-CoA synthetase; Pr	7e-05
PTZ00237	647	PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisi	2e-04
cd05905	556	cd05905, Dip2, Disco-interacting protein 2 (Dip2)	3e-04
TIGR03443	1389	TIGR03443, alpha_am_amid, L-aminoadipate-semialdeh	3e-04
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	4e-04
PRK08308	414	PRK08308, PRK08308, acyl-CoA synthetase; Validated	7e-04
cd05943	616	cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac	7e-04
PLN03052	728	PLN03052, PLN03052, acetate--CoA ligase; Provision	0.001
PTZ00342	746	PTZ00342, PTZ00342, acyl-CoA synthetase; Provision	0.002

>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis

 Score =  427 bits (1101), Expect = e-149
 Identities = 162/265 (61%), Positives = 186/265 (70%), Gaps = 6/265 (2%)

Query: 160 PSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLA 219
           P D AL LHTSGTT RPKGVPLT  NL AS  NI   +KLT SD  + V+PLFH+HG++ 
Sbjct: 1   PDDPALILHTSGTTGRPKGVPLTHKNLLASARNIAKSHKLTPSDRCLNVMPLFHIHGLIV 60

Query: 220 GLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYP 279
            LL++  AG +V  P   +FSAS FW D+ KY  TWY+AVPTIHQI+L      P    P
Sbjct: 61  SLLATLLAGGSVVCPP--KFSASKFWDDIAKYRVTWYSAVPTIHQILLKTAKPNPGKPPP 118

Query: 280 KLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP 339
           +LRFIRS SA L P +L RLE+ FG PVLEAY MTEA H ++SNPLP     KPGSVGRP
Sbjct: 119 RLRFIRSASAPLPPAVLDRLEKRFGVPVLEAYGMTEAAHQIASNPLPP-LVRKPGSVGRP 177

Query: 340 VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDS 399
            G E+AILD+ G P   G +GE+ IRGPNVT GY NNPEAN+ AF  GWF TGD+GY D 
Sbjct: 178 AGVEVAILDDDGRPLPPGQEGEIVIRGPNVTAGYLNNPEANREAFRDGWFRTGDLGYLDE 237

Query: 400 DGYLHLVGRIKELINRGGNLHESIS 424
           DGYL L GRIKELINRGG   E IS
Sbjct: 238 DGYLFLTGRIKELINRGG---EKIS 259

FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345

>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  345 bits (886), Expect = e-114
 Identities = 165/424 (38%), Positives = 223/424 (52%), Gaps = 9/424 (2%)

Query: 5   TLIGLLNQVIDQFSSKRALSVSGK-FDLTYSRIHELVERAASRLVAAGINAGDVVALTFP 63
           TL  LL +   +   + AL   G+   LTY  +     R A+ L A G+  GD VA+  P
Sbjct: 12  TLASLLERAARRNPDRPALIFLGRGGRLTYRELDRRANRLAAALQALGVKPGDRVAILLP 71

Query: 64  NTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAE--GNAAAQAAAS 121
           N+ EF+I FLA +RA A A PLN   TP E  + L+D+ +K+L+T AE      A A A 
Sbjct: 72  NSPEFLIAFLAALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAVAEAL 131

Query: 122 KLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPL 181
            + +        D    +TL    +E           DP D+A  L+TSGTT  PKGV L
Sbjct: 132 PVVLVVLLVGDADDRLPITLEALAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVL 191

Query: 182 TQNNLAASVSNIKSVYK--LTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRF 239
           T  NL A+ + I +     LT  D  +  LPLFH+ G++ GLL+    G  + L +   F
Sbjct: 192 THRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIFGLIVGLLAPLLGGGTLVLLSPEPF 251

Query: 240 SASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRL 299
                   + KY  T  + VPT  + +LD      + +   LR + S  A L P +L R 
Sbjct: 252 DPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDDDDLSSSLRLVLSGGAPLPPELLERF 311

Query: 300 EEAFG-APVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGG 357
           EE FG   +LE Y +TE + +++ NP P+D   KPGSVGRP+ G E+ I+D  G     G
Sbjct: 312 EERFGPIAILEGYGLTETSPVVTINP-PDDLLAKPGSVGRPLPGVEVRIVDPDGGEVLPG 370

Query: 358 AKGEVCIRGPNVTKGYKNNPEANKSAF-LFGWFHTGDIGYFDSDGYLHLVGRIKELINRG 416
             GE+ +RGPNV KGY N PEA   AF   GW  TGD+GY D DGYL++VGR+K+LI  G
Sbjct: 371 EVGEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRTGDLGYVDEDGYLYIVGRLKDLIISG 430

Query: 417 GNLH 420
           G   
Sbjct: 431 GENI 434

Length = 534

>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme

 Score =  318 bits (817), Expect = e-105
 Identities = 136/402 (33%), Positives = 199/402 (49%), Gaps = 16/402 (3%)

Query: 32  TYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTP 91
           TY  + E   R A+ L A G+  GD VA+  PN+ E+V+  LAV++A A   PL+ +   
Sbjct: 1   TYRELDERANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPA 60

Query: 92  DEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDA---DSELTLSLAHSES 148
           +   + L DSE+K+L+T  E          KL +  A   + D       L   L    S
Sbjct: 61  ERLAYILEDSEAKVLITDDELLPKLLEVLLKLLVLLALIIVGDDGEGLDLLDDELLAGAS 120

Query: 149 DTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIV 208
                  +  DP D+A  ++TSGTT +PKGV LT  NL A  + +   + LT  D  V++
Sbjct: 121 AEPPAPPV--DPDDLAYIIYTSGTTGKPKGVMLTHRNLLALAAGLAERFGLTPGD-RVLL 177

Query: 209 LPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLD 268
           L   H  G +  +     AG  + L        +     + KY  T    VPT+ +++L 
Sbjct: 178 LLPLHFDGSVWEIFGPLLAGGTLVLVPKFTLDPARLLDLIEKYKVTVLYGVPTLLRLLLK 237

Query: 269 RHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFG-APVLEAYAMTEATHLMSSNPLPE 327
               + +     LR + S    L P +L RL E FG  P++  Y  TE T ++++  LP 
Sbjct: 238 -APEEKKYDLSSLRLVLSGGEPLPPELLRRLRERFGGVPLVNGYGPTETT-VVATANLPG 295

Query: 328 DGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFL- 385
           D   KPGS+GRP+ G E+ +LDE G P   G  GE+CIRGP V +GY N+PE     F+ 
Sbjct: 296 DPEVKPGSIGRPLPGVEVKVLDEEGEPVPPGEVGELCIRGPGVARGYLNDPELTAERFVE 355

Query: 386 --FGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISL 425
             +G + TGD+G +D DGYL ++GR  + +   G   E I  
Sbjct: 356 DGWGMYRTGDLGRWDEDGYLEILGRKDDQVKIRG---ERIEP 394

Length = 412

>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD

 Score =  313 bits (804), Expect = e-103
 Identities = 145/416 (34%), Positives = 203/416 (48%), Gaps = 41/416 (9%)

Query: 6   LIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNT 65
           L  LL +   +F  + AL+  G+  LTY+ + EL +R A+ L   G+  GD VAL  PN 
Sbjct: 1   LADLLERAARRFPDRPALTFFGR-KLTYAELDELSDRFAAYLQQLGVKKGDRVALMLPNC 59

Query: 66  VEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNI 125
            +F I +  +++A A   P+N  YTP E E  L+DS +K+L+                 I
Sbjct: 60  PQFPIAYFGILKAGAVVVPVNPLYTPRELEHQLNDSGAKVLIVA---------------I 104

Query: 126 SHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNN 185
           S   A    A   L + L                P D+A+  +T GTT  PKG  LT  N
Sbjct: 105 SFEDALASGAPLPLPVEL---------------SPDDLAVLQYTGGTTGVPKGAMLTHRN 149

Query: 186 LAASVSNIKSVYK--LTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTL-PAAGRFSAS 242
           L A+V  I +  K      D  +  LPLFH+ G+   +L     GA   L P    F   
Sbjct: 150 LVANVQQIAAWVKDLREGEDRFLTALPLFHIFGLTVNMLLGLRLGATNVLVP---NFRPI 206

Query: 243 TFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEA 302
              +++ +Y  T +  VPT++  +L  H    +  +  LR   S  A L   +  R EE 
Sbjct: 207 NVLKEIKRYRFTIFPGVPTLYNALL-NHPEFKKYDFSSLRLCISGGAPLPVEVAERFEEK 265

Query: 303 FGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGE 361
            GAP++E Y +TE + + + NPL  DG  KPGS+G P+ G E+ I+D+ G     G  GE
Sbjct: 266 TGAPLVEGYGLTETSPVTTVNPL--DGERKPGSIGLPLPGTEVKIVDDEGNELPPGEVGE 323

Query: 362 VCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
           + +RGP V KGY N PE        GW  TGDIGY D DGY ++V R K++I  GG
Sbjct: 324 LVVRGPQVMKGYWNRPEETAEVLTDGWLRTGDIGYMDEDGYFYIVDRKKDMIIVGG 379

This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468

>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated

 Score =  303 bits (777), Expect = 4e-98
 Identities = 159/404 (39%), Positives = 217/404 (53%), Gaps = 15/404 (3%)

Query: 31  LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
           ++Y  +  LV+  A +L  +G+  GD VAL   +  EFV+  LA  RA     PL+ A  
Sbjct: 44  ISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVVALLAASRADLVVVPLDPALP 103

Query: 91  PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDT 150
             E       + ++++L  A+G        ++              S  TLS+       
Sbjct: 104 IAEQRVRSQAAGARVVLIDADGPHDRAEPTTRWWPLTVNVGGDSGPSGGTLSV--HLDAA 161

Query: 151 NAISKLTNDP----SDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTV 206
              +  T+ P     D A+ + T GTT  PK VP T  N+A+SV  I + Y+L+  D+TV
Sbjct: 162 TEPTPATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGYRLSPRDATV 221

Query: 207 IVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIV 266
            V+PL+H HG++A LL++ A+G AV LPA GRFSA TFW D+    ATWYTAVPTIHQI+
Sbjct: 222 AVMPLYHGHGLIAALLATLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQIL 281

Query: 267 LDRHVAKPEP-VYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPL 325
           L+R   +P       LRFIRSCSA L       L+  F APV+ A+ MTEATH +++  +
Sbjct: 282 LERAATEPSGRKPAALRFIRSCSAPLTAETAQALQTEFAAPVVCAFGMTEATHQVTTTQI 341

Query: 326 P-----EDGPHKPGSVGRPVGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEAN 380
                 E+     G VGR  G +I I+   G+P   GA GEV +RG  V +GY  +P   
Sbjct: 342 EGIGQTENPVVSTGLVGRSTGAQIRIVGSDGLPLPAGAVGEVWLRGTTVVRGYLGDPTIT 401

Query: 381 KSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESIS 424
            + F  GW  TGD+G   + G L + GRIKELINRGG   E IS
Sbjct: 402 AANFTDGWLRTGDLGSLSAAGDLSIRGRIKELINRGG---EKIS 442

Length = 534

>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated

 Score =  262 bits (673), Expect = 1e-82
 Identities = 132/404 (32%), Positives = 201/404 (49%), Gaps = 18/404 (4%)

Query: 32  TYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTP 91
           TY+ + E V R A+ L A G+  GD VA+   N+ E++  + AV +  A   P+N    P
Sbjct: 33  TYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIGAVLHPINIRLKP 92

Query: 92  DEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTN 151
           +E  + L+D+E +++L  +E      A   +L          D  +           +  
Sbjct: 93  EEIAYILNDAEDRVVLVDSEFVPLLAAILPQLPTVRTVIVEGDGPAAPLAPEVGEYEELL 152

Query: 152 AISKLTN-----DPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTV 206
           A +  T      D +D A  L+TSGTT  PKGV L+  NL      + +  KL+  D  +
Sbjct: 153 AAASDTFDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWLKLSRDDVYL 212

Query: 207 IVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIV 266
           +++P+FHVH      L+   AGA   +P   RF        +     T++ AVPTI Q++
Sbjct: 213 VIVPMFHVHAWGLPYLA-LMAGAKQVIP--RRFDPENLLDLIETERVTFFFAVPTIWQML 269

Query: 267 LDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLP 326
           L +        +  LR +    A+L P +L   +E FG  +++ Y MTE + ++S  P  
Sbjct: 270 L-KAPRAYFVDFSSLRLVIYGGAALPPALLREFKEKFGIDLVQGYGMTETSPVVSVLPPE 328

Query: 327 EDGP---HKPGSVGRPV-GQEIAILDEIG--VPQEGGAKGEVCIRGPNVTKGYKNNPEAN 380
           +  P    K  S GRP+ G E  I+D+ G  +P +GG  GE+ +RGP + +GY N PEA 
Sbjct: 329 DQLPGQWTKRRSAGRPLPGVEARIVDDDGDELPPDGGEVGEIIVRGPWLMQGYWNRPEAT 388

Query: 381 KSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESIS 424
                 GW HTGD+GY D DGYL++  RIK++I  GG   E+I 
Sbjct: 389 AETIDGGWLHTGDVGYIDEDGYLYITDRIKDVIISGG---ENIY 429

Length = 521

>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated

 Score =  262 bits (671), Expect = 2e-82
 Identities = 138/426 (32%), Positives = 203/426 (47%), Gaps = 22/426 (5%)

Query: 5   TLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPN 64
           TL  LL +   +F  K A  V G   LTY+ ++  V RAA+ L A GI  GD VA+  PN
Sbjct: 6   TLPELLARAARRFGDKEAY-VFGDQRLTYAELNARVRRAAAALAALGIGKGDRVAIWAPN 64

Query: 65  TVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLT-----PAEGNAAAQAA 119
           +  +VI  L  ++A A   PLN  YT DE  + L+  ++K L         + +A  +  
Sbjct: 65  SPHWVIAALGALKAGAVVVPLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSATTRLP 124

Query: 120 ASKLNISHATATLLDADSELT-----LSLAHSESDTNAISKLTNDPSDVALFLHTSGTTS 174
           A +  +   T        ++      L+          +     DP DVA  L TSGTT 
Sbjct: 125 ALEHVVICETEEDDPHTEKMKTFTDFLAAGDPAERAPEV-----DPDDVADILFTSGTTG 179

Query: 175 RPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLP 234
           RPKG  LT   L ++ ++      LTE D  +   P FHV G  AG+ +    GA + LP
Sbjct: 180 RPKGAMLTHRQLLSNAADWAEYLGLTEGDRYLAANPFFHVFGYKAGVNAPLMRGATI-LP 238

Query: 235 AAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPV 294
               F     ++ +     T     PT++  +L  H  +       LR   + +AS+   
Sbjct: 239 LP-VFDPDEVFRLIETERITVLPGPPTMYNSLLQ-HPDRSAEDLSSLRLAVTGAASMPVA 296

Query: 295 ILSRLEEAFGAP-VLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILDEIGV 352
           +L R E   G   VL  Y ++EA+ + + N L +D     G++G    G E  I++E+G 
Sbjct: 297 LLERFESELGVDIVLTGYGLSEASGVTTFNRLDDDRKTVAGTIGTAIAGVENKIVNELGE 356

Query: 353 PQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF-GWFHTGDIGYFDSDGYLHLVGRIKE 411
               G  GE+ +RGPNV KGY ++PEA  +A    GW HTGD+G  D +GYL++V R K+
Sbjct: 357 EVPVGEVGELLVRGPNVMKGYYDDPEATAAAIDADGWLHTGDLGRLDEEGYLYIVDRKKD 416

Query: 412 LINRGG 417
           +   GG
Sbjct: 417 MFIVGG 422

Length = 513

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  255 bits (653), Expect = 7e-81
 Identities = 127/399 (31%), Positives = 173/399 (43%), Gaps = 69/399 (17%)

Query: 30  DLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAY 89
             TY+ + E V R A+ L+A G+  GD VAL   N  EF+  + A+ +  A A P+N A 
Sbjct: 3   RYTYAELAERVNRLAAGLLALGVRPGDRVALMLDNCPEFLRAWFALNKLGAVAVPINTAL 62

Query: 90  TPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESD 149
             +E    L  S ++L++                                         D
Sbjct: 63  RGEELAHILDHSGARLIVV----------------------------------------D 82

Query: 150 TNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVL 209
           T AI             L+TSGTT  PKGV LT   L  +      +  L   D  +  L
Sbjct: 83  TAAI-------------LYTSGTTGPPKGVLLTHAQLLFAARLAARLLGLRPDDVLLTPL 129

Query: 210 PLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDR 269
           PLFH++     + ++   GA + L    RFSAS FW  + K+ AT +  +  +  I L +
Sbjct: 130 PLFHINAQAYSVYAALLVGATLVL--LPRFSASRFWDQVRKHGATVFNLLGAMAAI-LMK 186

Query: 270 HVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDG 329
               P+     LRF+    A L   I    EE FG  ++E Y MTE    +    +    
Sbjct: 187 QPPSPDDRDHPLRFV--FGAPLPAAIWPAFEERFGVKLVEGYGMTETGVPI----IAPGD 240

Query: 330 PHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRG-PNVT--KGYKNNPEANKSAFL 385
           P  PGS GRP  G E+ I+DE G     G  GE+ +R        KGY   PEA   A+ 
Sbjct: 241 PAPPGSCGRPRPGVEVRIVDEDGREVPPGEVGELVVRPRRPWAMFKGYYGMPEATAKAWR 300

Query: 386 FGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESIS 424
            GWFHTGD G  D DG+L+ V R K+ I R G   E+IS
Sbjct: 301 NGWFHTGDRGRRDEDGFLYFVDRKKDAIRRRG---ENIS 336

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)

 Score =  253 bits (648), Expect = 3e-79
 Identities = 149/420 (35%), Positives = 202/420 (48%), Gaps = 38/420 (9%)

Query: 12  QVIDQFSSKRAL--SVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFV 69
               +F  + AL  + +G+  LTY+ +  LV R A+ L A G   GDVV L  PN++EF 
Sbjct: 13  LFASEFGDRPALIDAATGR-ALTYAELERLVRRLAAGLAARGGRKGDVVLLLSPNSLEFP 71

Query: 70  IMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHAT 129
           ++FLAV+ A A     N  YTP E    + DS +KL +T +E      + A +       
Sbjct: 72  VVFLAVLSAGAVVTTANPLYTPAEIAKQVKDSGAKLAITTSELAEKLASLALE------- 124

Query: 130 ATLLDADSELTLSLAHSESDTNAISKLTND---PSDVALFLHTSGTTSRPKGVPLTQNNL 186
             ++  DS    S A  +       +         DVA   ++SGTT R KGV LT  NL
Sbjct: 125 -PVVLLDSADDGSAAIDDLLFADEPEPPVVVIKQDDVAALPYSSGTTGRSKGVMLTHRNL 183

Query: 187 AASVSNIKSVYKLTESDSTVI--VLPLFHVHGMLAGLLSSFAAGAA-VTLPAAGRFSAST 243
            A+V+ + +          V   VLP+FH++G+   LL+    GA  V +P   RF    
Sbjct: 184 IANVAQLVAGEGPNFDREDVTLCVLPMFHIYGLTVILLALLRLGATVVVMP---RFDLEK 240

Query: 244 FWQDMIKYNATWYTAVPTI------HQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILS 297
           F   + KY  T    VP I      H IV    +         L+ I S +A L   +  
Sbjct: 241 FLAAIEKYKVTHLPVVPPIVLALVKHPIVDKYDL-------SSLKQIGSGAAPLGKELAE 293

Query: 298 RLEEAF-GAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILD-EIGVPQ 354
                F G  + + Y MTE++ + +  P+PE  P KPGSVGR V   E  I+D E G   
Sbjct: 294 AFRARFPGVELGQGYGMTESSPVTTMCPVPEKDP-KPGSVGRLVPNVEAKIVDPETGESL 352

Query: 355 EGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF-GWFHTGDIGYFDSDGYLHLVGRIKELI 413
                GE+ +RGP V KGY NNPEA        GW HTGD+GYFD DGYL +V R+KELI
Sbjct: 353 PPNQPGELWVRGPQVMKGYLNNPEATAETIDKDGWLHTGDLGYFDEDGYLFIVDRLKELI 412

4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score =  249 bits (639), Expect = 1e-78
 Identities = 135/388 (34%), Positives = 179/388 (46%), Gaps = 64/388 (16%)

Query: 31  LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
           LTY  +     R A  L+A G+  GD VA+  P + E+V+++LA+ RA   A PLN +Y 
Sbjct: 12  LTYGELDARSGRLAKALLALGLLPGDRVAVLAPKSAEYVVLYLAIWRAGGVAVPLNPSYP 71

Query: 91  PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDT 150
             E  + LS                                  D+   L +         
Sbjct: 72  AAELAYILS----------------------------------DSQPSLLV--------- 88

Query: 151 NAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLP 210
                      D AL ++TSGTT RPKGV LT  NLAA+   +   ++ T SD  +  LP
Sbjct: 89  -----------DPALIIYTSGTTGRPKGVVLTHGNLAANARALVEAWRWTASDVLLHALP 137

Query: 211 LFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRH 270
           L HVHG+   L     AGA+V      RF         +    T +  VPTI+  +L+ +
Sbjct: 138 LHHVHGLFNALHCPLWAGASVEF--LPRFDPQERDALRLLPRITVFMGVPTIYTRLLEHY 195

Query: 271 VAKPEPVY--PKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPED 328
                       LR   S SA+L   +L R EE  G  +LE Y MTE T +  SNPL  D
Sbjct: 196 EFDDAAAAAARNLRLFVSGSAALPVPVLERWEERTGHTLLERYGMTE-TGMALSNPL--D 252

Query: 329 GPHKPGSVGRPV-GQEIAILDEIGVPQ-EGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF 386
           G  +PG+VG P+ G E+ I+DE G      G  GE+ +RGPNV   Y N PEA   AF  
Sbjct: 253 GERRPGTVGLPLPGVEVRIVDEDGGEPLAAGEVGEIQVRGPNVFSEYWNKPEATAEAFTE 312

Query: 387 -GWFHTGDIGYFDSDGYLHLVGRIKELI 413
            GWF TGD+G  D DGY  ++GR  + I
Sbjct: 313 DGWFKTGDVGVVDEDGYYRILGRKSDDI 340

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)

 Score =  247 bits (634), Expect = 3e-77
 Identities = 133/399 (33%), Positives = 188/399 (47%), Gaps = 27/399 (6%)

Query: 31  LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
           LT++ + +   R A  L   G+  GDVVAL  PN++EF  +FL  + A    +  N +YT
Sbjct: 11  LTFADLLKKALRLAKGLRKLGLKQGDVVALISPNSIEFPPVFLGCLAAGGIVSAANPSYT 70

Query: 91  PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADS-----ELTLSLAH 145
           PDE    L  S+ KL+    +     + AA +L        L  A       E  L    
Sbjct: 71  PDELAHQLKISKPKLIFCDPDELDKVKEAAKELGPVVRIIVLDSAPDGVLRIEDLLEPRL 130

Query: 146 SESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKL---TES 202
              D    + L +   D A  L++SGTT  PKGV L+  N+ A++S ++   K    + +
Sbjct: 131 GAEDEFRPTPLIDGKDDTAALLYSSGTTGLPKGVMLSHKNIIANLSQVQDTLKGNPDSSN 190

Query: 203 DSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTI 262
           D  +  LP +H +G+   L S       + +P   +F + TF + + KY  T    VP I
Sbjct: 191 DVVLTFLPFYHAYGLTTTLASLLCGATVIIMP---KFDSETFLKLIEKYKVTSLFLVPPI 247

Query: 263 HQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-----GAPVLEAYAMTEAT 317
             + L +     +     LR I S +A L       L+E          + + Y MTE  
Sbjct: 248 -AVALAKSPLVDKYDLSSLRVIFSGAAPL----SKELQEELRKRFPNTTIKQGYGMTETG 302

Query: 318 HLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEG-GAKGEVCIRGPNVTKGYKN 375
              ++   P D   KPGSVGR V   E  I+DE G    G   +GE+C++GP + KGY N
Sbjct: 303 -PATTLTPPGDE--KPGSVGRLVPNVEAKIVDEDGGKSLGPNERGELCVKGPQIMKGYLN 359

Query: 376 NPEANKSAFLF-GWFHTGDIGYFDSDGYLHLVGRIKELI 413
           NPEA K      GW HTGDIGYFD DG  ++V R KELI
Sbjct: 360 NPEATKETIDEDGWLHTGDIGYFDEDGNFYIVDRKKELI 398

This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487

>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I

 Score =  242 bits (621), Expect = 3e-77
 Identities = 108/258 (41%), Positives = 146/258 (56%), Gaps = 6/258 (2%)

Query: 162 DVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGL 221
           D A  L+TSGTT +PKGV L+  NL A+   +     LTE D  + VLPLFHV G  +GL
Sbjct: 1   DPAFILYTSGTTGKPKGVVLSHRNLLANAQALAQAIGLTEGDVLLSVLPLFHVVGGGSGL 60

Query: 222 LSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKL 281
           L +  AG  V L     F   +F + + +Y  T    VPT++   L +           L
Sbjct: 61  LGALLAGGTVVLYEGFPF-PLSFLELIEQYRVTVLFGVPTLYDA-LAKAAEDRGYDLSSL 118

Query: 282 RFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV- 340
           R + S    L+P +L R EE  GAP+LE Y +TE + +++S   P+    KPG+VGRPV 
Sbjct: 119 RLLISGGEPLSPELLERFEERPGAPILEGYGLTETS-VVTSTN-PDSELKKPGTVGRPVP 176

Query: 341 GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF-GWFHTGDIGYFDS 399
           G E+ ++DE G P   G  GE+ +RGP V KGY NNP    +A    GW+ TGD+GY D 
Sbjct: 177 GVEVRVVDEEGKPLPPGEVGELVVRGPWVMKGYWNNPPETTAAATEDGWYRTGDLGYLDE 236

Query: 400 DGYLHLVGRIKELINRGG 417
           +GYL++ GR K+LI  GG
Sbjct: 237 EGYLYITGRSKDLIKVGG 254

This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338

>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  236 bits (604), Expect = 2e-74
 Identities = 103/261 (39%), Positives = 145/261 (55%), Gaps = 6/261 (2%)

Query: 160 PSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLA 219
           P D AL  +TSGTT RPKG  LT  N+  +  +I     LTE D T++ +PLFHV G++ 
Sbjct: 1   PDDPALIQYTSGTTGRPKGAMLTHRNVLNNGYSIARRLGLTEGDRTLVPVPLFHVFGLVL 60

Query: 220 GLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYP 279
           G+L+S  AGA + L    +F      + + +   T    VPT+   +L+ H    +    
Sbjct: 61  GVLASLTAGATLVLME--KFDPGAALRLIERERITALHGVPTMFIALLE-HPDFDKFDLS 117

Query: 280 KLRFIRSCSASLAPVILSRLEEAFG-APVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGR 338
            LR   S  A + P ++ R+ E F  A +   Y MTE + + +     +    +PG+VGR
Sbjct: 118 SLRTGISGGAPVPPELVRRIREEFPMAEITTGYGMTETSGVGTQTSGDDPYEDRPGTVGR 177

Query: 339 PV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF-GWFHTGDIGY 396
           P+ G E+ I+D  G     G  GE+C+RG +V KGY N+PEA   A    GW HTGD+GY
Sbjct: 178 PLPGVEVKIVDPDGGEVPPGEVGEICVRGYSVMKGYYNDPEATAEAIDADGWLHTGDLGY 237

Query: 397 FDSDGYLHLVGRIKELINRGG 417
            D DGYL +VGRIK++I RGG
Sbjct: 238 MDEDGYLRIVGRIKDMIIRGG 258

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347

>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases

 Score =  236 bits (605), Expect = 2e-73
 Identities = 122/404 (30%), Positives = 180/404 (44%), Gaps = 82/404 (20%)

Query: 30  DLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAY 89
            +T++ + E V R A+ L+A G+  GD VA+   N  E+VI  LA++ A A   P+    
Sbjct: 5   TITWAELAERVRRLAAGLIALGVKPGDRVAILAENRPEWVIADLAILAAGAVPVPIYPTS 64

Query: 90  TPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESD 149
           +P+E  + L+DS ++++                                           
Sbjct: 65  SPEEVAYILNDSGARVVFV----------------------------------------- 83

Query: 150 TNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVL 209
                   + P D+A  ++TSGTT  PKGV LT  NL A  + +  V  L+  D  +  L
Sbjct: 84  -------EDKPDDLATLIYTSGTTGNPKGVMLTHRNLLAQAAALLEVIPLSPGDRVLSFL 136

Query: 210 PLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVP----TIHQI 265
           PL HV     G     ++GA V        S  T  +D+ +   T + AVP     I+  
Sbjct: 137 PLAHVFEQRLGEYLPLSSGARVNFAE----SPETLLEDLREVRPTVFFAVPRVWEKIYAG 192

Query: 266 VLDRHVAKPEP---VY------PKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEA 316
           +  +  A       ++       +LRF  S  A L P +L     A G P+LE Y +TE 
Sbjct: 193 IEAKVAAAGPLKRKLFRWALGGGRLRFAVSGGAPLPPEVLEFF-RALGIPILEGYGLTET 251

Query: 317 THLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKN 375
           + + + N     G  + G+VG+P+ G E+ I ++          GE+ +RGPNV KGY  
Sbjct: 252 SGVATVNRP---GDIRIGTVGKPLPGVEVRIAED----------GEILVRGPNVMKGYYK 298

Query: 376 NPEANKSAFLF-GWFHTGDIGYFDSDGYLHLVGRIKELI-NRGG 417
           NPEA   A    GW HTGDIG  D DG+L +  R K+LI   GG
Sbjct: 299 NPEATAEALDEDGWLHTGDIGRLDEDGFLVITDRKKDLIVTAGG 342

This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456

>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)

 Score =  228 bits (584), Expect = 2e-70
 Identities = 124/399 (31%), Positives = 178/399 (44%), Gaps = 55/399 (13%)

Query: 31  LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
           LTY  + +  +R A+ L   G+  GDVVA   PN  EFV+++LA  R  A   P+   Y 
Sbjct: 2   LTYGELDDAADRLAAALAELGVRPGDVVAFQLPNWWEFVVVYLACARIGAVINPIVPIYR 61

Query: 91  PDEFEFYLSDSESKLLLTPAEG---NAAAQAAASKLNISHATATLLDADSELTLSLAHSE 147
             E  F L  + +++L  P E    + AA                               
Sbjct: 62  ERELGFILRQARARVLFVPDEFRGFDYAAM------------------------------ 91

Query: 148 SDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVI 207
                       P DVAL L+TSGTT  PKGV  T N L A V +      LT  D  ++
Sbjct: 92  ------------PDDVALLLYTSGTTGEPKGVMHTHNTLLAEVRSYVERLGLTPDDVVLM 139

Query: 208 VLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPT-IHQIV 266
             PL H+ G L GL      GA V L    R+  +   + + ++  T+       +  ++
Sbjct: 140 PSPLAHITGFLYGLELPLLLGATVVL--QDRWDPARALELIREHGVTFTMGATPFLADLL 197

Query: 267 LDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLP 326
                    P  P LR      A +   +  R  EA GA V+ AY MTE   L++     
Sbjct: 198 --AAADAAGPDLPSLRVFLCGGAPVPRELARRAAEALGAKVVRAYGMTE-VPLVTVGTPD 254

Query: 327 EDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFL 385
           +    +  + GRPV G E+ I+D+ G     G +GE+ +RGP +  GY + P+  ++   
Sbjct: 255 DPDDKRAATDGRPVPGVEVRIVDDDGNDVPPGEEGELQVRGPQLFLGYLDPPDNTEAFTD 314

Query: 386 FGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESIS 424
            GWF TGD+G  D+DGYL + GR K++I RGG   E+IS
Sbjct: 315 DGWFRTGDLGRLDADGYLRITGRKKDIIIRGG---ENIS 350

Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score =  227 bits (581), Expect = 4e-70
 Identities = 120/396 (30%), Positives = 176/396 (44%), Gaps = 66/396 (16%)

Query: 31  LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
           +TY+ + ELV+R A  L   G+  GD VAL   N+ +FVI + A++RA A   P+N    
Sbjct: 2   ITYAELLELVDRLAGLLQEKGVRKGDRVALYMQNSPQFVIAYYAILRAGAVVVPVNPMNR 61

Query: 91  PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDT 150
             E E  L+DS +++L+                                      SE D 
Sbjct: 62  EAELEHILNDSGARVLI------------------------------------VGSELD- 84

Query: 151 NAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLP 210
                      DVA+  +TSGTT  PKG   T   + A+ +   +   LT     +  LP
Sbjct: 85  -----------DVAVIPYTSGTTGLPKGCMHTHRTVLATAAASAAWSGLTPDSVLLAFLP 133

Query: 211 LFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRH 270
           LFHV GM   + +    GA + L    R+      + + +Y  T +T + T+   +L  H
Sbjct: 134 LFHVAGMQGSMNAPIYTGATLVLLT--RWDREAAARAIERYRVTHWTNIVTMVVDLLA-H 190

Query: 271 VAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEA---THLMSSNPLPE 327
               +     L+ +    A+L P +  RL+   G    E Y +TE    TH       P 
Sbjct: 191 PRFADYDLSSLKVVGGGGAALPPAVAERLKALTGLLYEEGYGLTETHTCTHFN-----PP 245

Query: 328 DGPHKPGSVGRPV-GQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFL 385
           D P KP  +G PV G +  ++D E G     G +GE+ +RGP V KGY N PEA   +F+
Sbjct: 246 DRP-KPQCLGIPVFGTDARVIDPETGEELPPGEEGEIVVRGPQVFKGYWNRPEATAESFI 304

Query: 386 F----GWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
                 +F TGD+GY D +GY   + R+K +IN  G
Sbjct: 305 ELDGKRFFRTGDLGYIDEEGYFFFLDRVKRMINVSG 340

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins

 Score =  220 bits (562), Expect = 3e-68
 Identities = 104/261 (39%), Positives = 134/261 (51%), Gaps = 12/261 (4%)

Query: 161 SDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAG 220
            D AL L+TSGTT RPKGV LT  NL A+  N  +   L+  D  ++  PL+H       
Sbjct: 1   DDPALILYTSGTTGRPKGVMLTHRNLLANAVNALAGVDLSPGDVYLLAAPLYHA-AGGLF 59

Query: 221 LLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPK 280
           LL + AAG  V L    +F        + ++  T    VPT+ Q +L R           
Sbjct: 60  LLPALAAGGTVVLMP--KFDPEAVLDLIERHRVTHTFLVPTMFQRLL-RLPDFARYDLSS 116

Query: 281 LRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEA---THLMSSNPLPEDGPHKPGSVG 337
           LR I   +A +   +   + E FG   ++ Y MTE    T L+S    PED   K GSVG
Sbjct: 117 LRLIIYGAAPMPAELKRAMIEWFGPVFVQGYGMTETGPTTTLLS----PEDWLRKLGSVG 172

Query: 338 RPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGY 396
           RPV G E+ I+DE G     G  GE+ +RGP V  GY N PEA   A   GW HTGD+GY
Sbjct: 173 RPVPGVEVRIVDEDGRELPPGEVGEIVVRGPAVMAGYWNRPEATAEALRDGWLHTGDLGY 232

Query: 397 FDSDGYLHLVGRIKELINRGG 417
            D DGYL++V R K++I  GG
Sbjct: 233 LDEDGYLYIVDRKKDMIISGG 253

Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342

>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated

 Score =  212 bits (543), Expect = 1e-63
 Identities = 132/397 (33%), Positives = 189/397 (47%), Gaps = 28/397 (7%)

Query: 31  LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
            TY  +     R A+ LVA G+  GD VA+    + E + ++LA +RA A   PLN AYT
Sbjct: 29  YTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLATLRAGAVFLPLNTAYT 88

Query: 91  PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLS-LAHSESD 149
             E ++++ D+E  L++      A     A+     H     LDAD   +L   A +  D
Sbjct: 89  LAELDYFIGDAEPALVVCDPANFAWLSKIAAAAGAPHVET--LDADGTGSLLEAAAAAPD 146

Query: 150 TNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVL 209
                 +     D+A  L+TSGTT R KG  L+  NL ++   +   ++ T  D  +  L
Sbjct: 147 DFET--VPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYWRFTPDDVLIHAL 204

Query: 210 PLFHVHGMLAGLLSSFAAGAA-VTLPAAGRFSASTFWQDMIKYNATWYTAVPTIH----- 263
           P+FH HG+      +  AGA+ + LP   +F        M +  AT    VPT +     
Sbjct: 205 PIFHTHGLFVATNVALLAGASMIFLP---KFDPDAVLALMPR--ATVMMGVPTFYTRLLQ 259

Query: 264 QIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSN 323
           +  L R  A        +R   S SA L        +E  G  +LE Y MTE T++ +SN
Sbjct: 260 EPRLTREAAA------HMRLFISGSAPLLAETHREFQERTGHAILERYGMTE-TNMNTSN 312

Query: 324 PLPEDGPHKPGSVGRPV-GQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANK 381
           P   DG  + G+VG P+ G  + + D E G     G  G + ++GPNV KGY   PE   
Sbjct: 313 PY--DGERRAGTVGFPLPGVSLRVTDPETGAELPPGEIGMIEVKGPNVFKGYWRMPEKTA 370

Query: 382 SAFLF-GWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
             F   G+F TGD+G  D  GY+H+VGR K+LI  GG
Sbjct: 371 EEFRADGFFITGDLGKIDERGYVHIVGRGKDLIISGG 407

Length = 504

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score =  206 bits (527), Expect = 3e-61
 Identities = 129/418 (30%), Positives = 185/418 (44%), Gaps = 39/418 (9%)

Query: 20  KRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRAR 79
           K AL V G    TY+ +   V R A+ L+  G+  GD VA    N+  + +++LA  RA 
Sbjct: 27  KTAL-VFGDRSWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLACARAG 85

Query: 80  ATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLL----DA 135
           A   P+N   T +E  + L  S ++  L        A+AA + L +     +L+    +A
Sbjct: 86  AVHVPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLPVDTLILSLVLGGREA 145

Query: 136 DSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAAS-VSNIK 194
                     +E+ + A   +     D+A  L+TSGT S PKG  LT   L A  VS I 
Sbjct: 146 PGGWLDFADWAEAGSVAEPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIV 205

Query: 195 SVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTL---PAAGRFSASTFWQDMI-K 250
           +   ++  D  +  LPL+H   +   L      GA   +   P              I  
Sbjct: 206 AG-DMSADDIPLHALPLYHCAQLDVFLGPYLYVGATNVILDAPDPELI------LRTIEA 258

Query: 251 YNATWYTAVPTIHQIVLDRHVAKPEPVYPK--LRFIRSC--SASLAPV-ILSRLEEAF-G 304
              T + A PT+  I L RH     P +    L  +R     AS+ PV +L  L E   G
Sbjct: 259 ERITSFFAPPTV-WISLLRH-----PDFDTRDLSSLRKGYYGASIMPVEVLKELRERLPG 312

Query: 305 APVLEAYAMTE----ATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAK 359
                 Y  TE    AT L      PE+   +PGS GRPV   E  ++D+ G     G  
Sbjct: 313 LRFYNCYGQTEIAPLATVLG-----PEEHLRRPGSAGRPVLNVETRVVDDDGNDVAPGEV 367

Query: 360 GEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
           GE+  R P +  GY ++PE    AF  GWFH+GD+G  D +GY+ +V R K++I  GG
Sbjct: 368 GEIVHRSPQLMLGYWDDPEKTAEAFRGGWFHSGDLGVMDEEGYITVVDRKKDMIKTGG 425

Length = 523

>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated

 Score =  207 bits (529), Expect = 4e-61
 Identities = 140/453 (30%), Positives = 210/453 (46%), Gaps = 50/453 (11%)

Query: 5   TLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPN 64
           TL+ L +  + +F  + AL   G    TY+ + + V RAA+ L A G+  GD VA+  PN
Sbjct: 33  TLVDLYDNAVARFGDRPALDFFGA-TTTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPN 91

Query: 65  TVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLL---------------TP 109
             + ++ F AV+R  A     N  YT  E E    D  +++ +               TP
Sbjct: 92  CPQHIVAFYAVLRLGAVVVEHNPLYTAHELEHPFEDHGARVAIVWDKVAPTVERLRRTTP 151

Query: 110 AEG-------NA--AAQAAASKLNISHATAT--LLDADSELTLS----LAHSE-SDTNAI 153
            E         A    Q  A +L I         L   +  T+     +  +   D + +
Sbjct: 152 LETIVSVNMIAAMPLLQRLALRLPIPALRKARAALTGPAPGTVPWETLVDAAIGGDGSDV 211

Query: 154 SKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKS-VYKLTESDSTVI-VLPL 211
           S     P DVAL L+TSGTT +PKG  LT  NL A+ +  K+ V  L +    V+  LP+
Sbjct: 212 SHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPGLGDGPERVLAALPM 271

Query: 212 FHVHGM-LAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRH 270
           FH +G+ L   L+    G  V LP             M K+  TW   VP +++ + +  
Sbjct: 272 FHAYGLTLCLTLAVSIGGELVLLP---APDIDLILDAMKKHPPTWLPGVPPLYEKIAE-- 326

Query: 271 VAKPEPVYPKLRFIR---SCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPE 327
            A+   V   L  +R   S + +L    +   E+  G  ++E Y +TE + ++  NP+ +
Sbjct: 327 AAEERGV--DLSGVRNAFSGAMALPVSTVELWEKLTGGLLVEGYGLTETSPIIVGNPMSD 384

Query: 328 DGPHKPGSVGRPV-GQEIAILD--EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAF 384
           D   +PG VG P    E+ I+D  +       G +GE+ +RGP V KGY N PE    +F
Sbjct: 385 D--RRPGYVGVPFPDTEVRIVDPEDPDETMPDGEEGELLVRGPQVFKGYWNRPEETAKSF 442

Query: 385 LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
           L GWF TGD+   + DG++ +V RIKELI  GG
Sbjct: 443 LDGWFRTGDVVVMEEDGFIRIVDRIKELIITGG 475

Length = 573

>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase)

 Score =  203 bits (519), Expect = 3e-60
 Identities = 114/394 (28%), Positives = 175/394 (44%), Gaps = 17/394 (4%)

Query: 31  LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
           LTY  + E V R  + L   GI   + V L   +T EF   F   I+  A   P+N   T
Sbjct: 31  LTYGELQEEVNRWGNALRELGIERENRVLLILLDTPEFPTAFWGAIKIGAVPVPINTLLT 90

Query: 91  PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLA-----H 145
           PD++ +YL+DS +++L+   E     + A  K +       ++       LS A      
Sbjct: 91  PDDYRYYLNDSRARVLVISEELWEVLKPALQK-DPHLRHVIVVGGAGPGALSYAQLIATA 149

Query: 146 SESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNI-KSVYKLTESDS 204
           +E    A +       D+A +L++SG+T RPKGV    +++  +     K+V  +TE D 
Sbjct: 150 AEELEAAATS----ADDMAFWLYSSGSTGRPKGVVHLHHDMLVTAEAYAKNVLGITEDDV 205

Query: 205 TVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQ 264
                 LF  +G+  GL    + GA   L    R +    +  + +Y  T +  VPT++ 
Sbjct: 206 VFSAAKLFFAYGLGNGLYFPLSVGATTVL-MPERPTPDAVFATIERYKPTVFFGVPTLYA 264

Query: 265 IVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNP 324
            +L         +   LR   S   +L   I  R +E FG  +L+    TE  H+  SN 
Sbjct: 265 AMLAAPEKPERDLS-SLRLCVSAGEALPAEIGYRWKELFGLEILDGIGSTEMLHIFLSN- 322

Query: 325 LPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSA 383
            P     K G+ G+PV G E+ ++DE G     G  GE+ +RG +   GY N  E  +  
Sbjct: 323 RPGA--VKYGTSGKPVPGYEVKLVDEDGEEVADGEIGELWVRGDSSAAGYWNRREKTRET 380

Query: 384 FLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
           F+  W  TGD  Y D DGY    GR  +++   G
Sbjct: 381 FVGEWTRTGDKYYRDEDGYYWYCGRSDDMLKVSG 414

Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score =  198 bits (507), Expect = 2e-59
 Identities = 115/396 (29%), Positives = 171/396 (43%), Gaps = 79/396 (19%)

Query: 30  DLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAY 89
            LT+  + + V + A +L A G+  GD VAL   N++EF+++FLA++R  A   PLN   
Sbjct: 1   SLTFQELDQRVSQLAEQLAALGVRRGDRVALLAKNSIEFLLLFLALLRLGAVVLPLNPRL 60

Query: 90  TPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESD 149
             +E +  L+D +  L                        AT+                 
Sbjct: 61  PQEELQQQLADLQPDL---------------------DRPATI----------------- 82

Query: 150 TNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVL 209
                            + TSG+T +PK V  T  N  AS         LT  D+ ++ L
Sbjct: 83  -----------------IFTSGSTGKPKAVVHTWGNHLASARGSAENLGLTPDDNWLLSL 125

Query: 210 PLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDR 269
           PLFHV G LA ++ S  AG A+ LP      A     +   +  T  + VPT  Q +L+ 
Sbjct: 126 PLFHVSG-LAIVMRSLLAGGALVLPDKFDAEAIAEALE--NHGVTHISLVPTQLQRLLES 182

Query: 270 HVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSN---PLP 326
                      LR +    A + P +L +  +  G P+   Y MTE     +S      P
Sbjct: 183 L---GARWLSSLRAVLLGGAPIPPSLLEQARQR-GIPLYPTYGMTE----TASQVATLKP 234

Query: 327 EDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFL 385
           +D   K GSVG+P  G+E+ I             GE+ +RGP++  GY            
Sbjct: 235 DDFLAKLGSVGKPLPGRELRI--------VNPQDGEILVRGPSLFLGYLPQGGLTPPLDE 286

Query: 386 FGWFHTGDIGYFDSDGYLHLVGRIKELINRGG-NLH 420
            GWFHTGD+GY D++GYL+++GR  +LI  GG N++
Sbjct: 287 DGWFHTGDLGYLDAEGYLYVLGRRDDLIISGGENIY 322

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated

 Score =  202 bits (516), Expect = 9e-59
 Identities = 133/430 (30%), Positives = 183/430 (42%), Gaps = 52/430 (12%)

Query: 30  DLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAY 89
             TY+ +   V R A+ L + G+  GDVVA   PN  E          A   A P+N   
Sbjct: 58  TWTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALWGG-EAAGIANPINPLL 116

Query: 90  TPDEFEFYLSDSESKLLLT------------------------------PAEGNAAAQAA 119
            P++    L  + +K+L+T                               A      +  
Sbjct: 117 EPEQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVLAALPELRTVVEVDLARYLPGPKRL 176

Query: 120 ASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGV 179
           A  L    A A +LD D+EL       +      S     P DVA + HT GTT  PK  
Sbjct: 177 AVPLIRRKAHARILDFDAELA-----RQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLA 231

Query: 180 PLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTL--PAAG 237
             T  N  A+      +  L   D+    LPLFHV+ +L   L+  A GA V L  P   
Sbjct: 232 QHTHGNEVANAWLGALLLGLGPGDTVFCGLPLFHVNALLVTGLAPLARGAHVVLATPQGY 291

Query: 238 RFSA--STFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVI 295
           R     + FW+ + +Y   + + VPT++  +L   V         LR+    +A L   +
Sbjct: 292 RGPGVIANFWKIVERYRINFLSGVPTVYAALLQVPVD--GHDISSLRYALCGAAPLPVEV 349

Query: 296 LSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQE--IAILDEIG- 351
             R E A G  ++E Y +TEAT + S NP   DG  + GSVG  +  Q   + ILD+ G 
Sbjct: 350 FRRFEAATGVRIVEGYGLTEATCVSSVNPP--DGERRIGSVGLRLPYQRVRVVILDDAGR 407

Query: 352 --VPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF-GWFHTGDIGYFDSDGYLHLVGR 408
                     G +CI GPNV  GY      NK  +L  GW +TGD+G  D+DGY  L GR
Sbjct: 408 YLRDCAVDEVGVLCIAGPNVFSGYL-EAAHNKGLWLEDGWLNTGDLGRIDADGYFWLTGR 466

Query: 409 IKELINRGGN 418
            K+LI RGG+
Sbjct: 467 AKDLIIRGGH 476

Length = 632

>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional

 Score =  197 bits (504), Expect = 3e-58
 Identities = 126/406 (31%), Positives = 196/406 (48%), Gaps = 45/406 (11%)

Query: 22  ALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARAT 81
           A+    K  +T+  +HE V   A +L A G+  GD VAL   N +E +++  A+ +  A 
Sbjct: 20  AIEFEEK-KVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGAV 78

Query: 82  AAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTL 141
           A  LN   + +E  + L D+E K L+T            +KL               +  
Sbjct: 79  AVLLNTRLSREELLWQLDDAEVKCLIT-------DDDFEAKLIP----------GISVKF 121

Query: 142 SLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLT-QNNLAASVSNIKSVYKLT 200
           +   +     A  +   D  +VA  ++TSGTT +PKGV  T  N+  ++V +  ++  LT
Sbjct: 122 AELMNGPKEEAEIQEEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSALNL-GLT 180

Query: 201 ESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVP 260
           E D  +  +P+FH+ G L+ L+ S   G  V L    +F A    + +     T  + V 
Sbjct: 181 EDDCWLAAVPIFHISG-LSILMRSVIYGMRVVL--VEKFDAEKINKLLQTGGVTIISVVS 237

Query: 261 TIHQIVLDRHVAK-PEPVYP-KLRFIRSCSASL---APVILSRLEEA--FGAPVLEAYAM 313
           T+    L R + +  E  YP   R +      L    P     LE+    G PV ++Y M
Sbjct: 238 TM----LQRLLERLGEGTYPSSFRCM------LLGGGPAPKPLLEQCKEKGIPVYQSYGM 287

Query: 314 TE-ATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTK 371
           TE A+ +++ +P  ED   K GS G+P+   E+ I  + GV      +GE+ ++GPNVTK
Sbjct: 288 TETASQIVTLSP--EDALTKLGSAGKPLFPCELKIEKD-GVVVPPFEEGEIVVKGPNVTK 344

Query: 372 GYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
           GY N  +A +  F  GWF TGDIGY D +G+L+++ R  +LI  GG
Sbjct: 345 GYLNREDATRETFQDGWFKTGDIGYLDEEGFLYVLDRRSDLIISGG 390

Length = 483

>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

 Score =  201 bits (512), Expect = 3e-58
 Identities = 134/472 (28%), Positives = 194/472 (41%), Gaps = 90/472 (19%)

Query: 12  QVIDQFSSKRALS--VSGKF-DLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEF 68
           + +       AL     G +  +TY  ++E V   AS L++ GI AGD VA+   N  E+
Sbjct: 24  ERVKDRPDGVALMYKELGGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEW 83

Query: 69  VIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLT--PAEGNAAA--QAAASKLN 124
            I  LA++   A + P+ +  TP++  + L++SESK++        +          K+ 
Sbjct: 84  AIADLAILALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVV 143

Query: 125 ISHATATLLD-------------ADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSG 171
                  L+               D  ++L L  S      I+     P D+A  ++TSG
Sbjct: 144 DLIVIIDLVREAVEAKALVLEVFPDEGISLFLIDSAGLEGRIAPP--KPDDLATIIYTSG 201

Query: 172 TTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIV-LPLFHVHGMLAGLLSSFAAGAA 230
           TT  PKGV LT  NL A V+ I  V         V+  LPL H+         +   G  
Sbjct: 202 TTGTPKGVMLTHRNLLAQVAGIDEVLPPIGPGDRVLSFLPLAHIFERAFEGGLALYGGVT 261

Query: 231 VTLPAAGRFSASTFWQDMIKYNATWYTAVP--------TIHQIV---------------- 266
           V           T  +D+ +   T    VP         I + V                
Sbjct: 262 VLFK----EDPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALK 317

Query: 267 ---------------LDRHVAKPEPVYPKLR--------FIRSCSASLAPVILSRLEEAF 303
                          L   +     V+ K+R        +  S  A L+P +L     + 
Sbjct: 318 VAYKKISRALLGGGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELL-HFFRSL 376

Query: 304 GAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEV 362
           G P+LE Y +TE + ++S NP P+      G+VG+P+ G E+ I D           GE+
Sbjct: 377 GIPILEGYGLTETSAVVSVNP-PDRF--VLGTVGKPLPGIEVKIAD----------DGEI 423

Query: 363 CIRGPNVTKGYKNNPEANKSAFLF-GWFHTGDIGYFDSDGYLHLVGRIKELI 413
            +RGPNV KGY  NPEA   AF   GWF TGD+G  D DGYL + GR KELI
Sbjct: 424 LVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLGELDEDGYLVITGRKKELI 475

Length = 613

>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated

 Score =  198 bits (504), Expect = 3e-58
 Identities = 114/393 (29%), Positives = 183/393 (46%), Gaps = 25/393 (6%)

Query: 31  LTYSRIHELVERAASRLV-AAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAY 89
           +TY ++HE V + A+ L+    +  G+ +A+   N++E++++  A+ +    A PLN   
Sbjct: 28  MTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIAVPLNIRL 87

Query: 90  TPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESD 149
           T +E  F L DS + +L         A +      +    +      + L         +
Sbjct: 88  TENELIFQLKDSGTTVLFVEKTFQNMALSMQKVSYVQRVISI-----TSLKEIEDRKIDN 142

Query: 150 TNAISKLTNDPSDVALFL--HTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVI 207
                    + ++ A F+  +TSGTT +PKG  LTQ N+  +  N      LT  D +++
Sbjct: 143 FV-------EKNESASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAIDLTMHDRSIV 195

Query: 208 VLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVL 267
           +LPLFH+ G+      +  AG  + +P   +F  +     + K+  T    VPTIHQ ++
Sbjct: 196 LLPLFHIGGIGLFAFPTLFAGGVIIVP--RKFEPTKALSMIEKHKVTVVMGVPTIHQALI 253

Query: 268 DRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEA--THLMSSNPL 325
           +            +R+  +  A   P  L R     G    + + MTE   T  M S   
Sbjct: 254 NC-SKFETTNLQSVRWFYNGGAP-CPEELMREFIDRGFLFGQGFGMTETSPTVFMLSE-- 309

Query: 326 PEDGPHKPGSVGRPVG-QEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAF 384
            ED   K GS+G+PV   +  ++DE     E G  GE+ IRGPNV K Y N P+A +   
Sbjct: 310 -EDARRKVGSIGKPVLFCDYELIDENKNKVEVGEVGELLIRGPNVMKEYWNRPDATEETI 368

Query: 385 LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
             GW  TGD+   D DG++++VGR KE+I  GG
Sbjct: 369 QDGWLCTGDLARVDEDGFVYIVGRKKEMIISGG 401

Length = 496

>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase

 Score =  195 bits (498), Expect = 2e-57
 Identities = 123/428 (28%), Positives = 175/428 (40%), Gaps = 47/428 (10%)

Query: 2   EGVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALT 61
              TL  LL     +   + A+ V G   LTY  +   V+R A+ L+A GI  GD V + 
Sbjct: 13  GDQTLGDLLAANAARHPDRTAV-VDGPRRLTYRELDAAVDRLAAGLLALGIGPGDRVLVQ 71

Query: 62  FPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAAS 121
            PN  EFVI++ A+ +  A       A+   E   +   SE+K  +              
Sbjct: 72  LPNVAEFVILYFALFKLGAIPVLALPAHRAHEIGHFARQSEAKAYIIADR---------- 121

Query: 122 KLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPL 181
                                            +L  +  DVALF  + GTT  PK +P 
Sbjct: 122 ----------------------FSGFDYAALARELLEELPDVALFQLSGGTTGLPKLIPR 159

Query: 182 TQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLA-GLLSSFAAGAAVTLPAAGRFS 240
           T N+   S         L      + VLP  H   + + GLL +  AG  V L      S
Sbjct: 160 THNDYLYSARASAEACGLDPGTVYLAVLPAAHNFTLSSPGLLGALLAGGTVVL--HHPPS 217

Query: 241 ASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLE 300
               +  + +   T    VP +  + L+            LR I+   A L+P +  R+E
Sbjct: 218 PDVAFPLIEREKVTHTALVPALLNLWLEAAEWDQAD-LSSLRVIQVGGAPLSPELARRVE 276

Query: 301 EAFGAPVLEAYAMTEATHLMSSNPLPEDGPHK-PGSVGRPV--GQEIAILDEIGVPQEGG 357
           E  G P+ + + M E     +     +D P     + GRP+    EI I+D+ G P   G
Sbjct: 277 ERLGCPLQQVFGMAEGLVNYTR---LDDPPDVIMRTQGRPISPADEIRIVDDQGEPVPPG 333

Query: 358 AKGEVCIRGPNVTKGYKNNPEANKSAFLF-GWFHTGDIGYFDSDGYLHLVGRIKELINRG 416
             GE+  RGP   +GY   PE N  AF   G++ TGD+   D+DGY  +VGRIK+ INRG
Sbjct: 334 EVGELLTRGPYTIRGYYRAPEHNARAFTDDGFYRTGDLVRIDADGYYRVVGRIKDQINRG 393

Query: 417 GNLHESIS 424
           G   E IS
Sbjct: 394 G---EKIS 398

2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483

>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

 Score =  196 bits (500), Expect = 3e-57
 Identities = 103/403 (25%), Positives = 158/403 (39%), Gaps = 25/403 (6%)

Query: 27  GKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLN 86
              +LTY  +   V R A+ L   G   GD VA+  PN+ E VI  LA  R  A  A ++
Sbjct: 37  LFRELTYGDLRREVARLANALKDLGGVKGDRVAIYMPNSPEAVIALLATARIGAIPAVVS 96

Query: 87  AAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNI-SHATATLLDADSELTL-SLA 144
              + +     ++D   K+L+         +  A   +  +  ++ ++     L      
Sbjct: 97  PGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSSVVVVPRLGLWYDEAV 156

Query: 145 HSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSN-IKSVYKLTESD 203
              S+      L     D    L+TSGTT +PKG+  +            K    L   D
Sbjct: 157 EKASEKFEFEPL--PADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHGDLLPGD 214

Query: 204 ---STVIVLPLFHVHGMLAGLLSSFAAGAAVTL-PAAGRFSASTFWQDMIKYNAT-WYTA 258
              ++        ++G+   + S  A+GA   L      +S    W+ + KY  T + T+
Sbjct: 215 RFWNSS---DPGWIYGLWYSVFSPLASGATTVLYDGRPFYSPERLWEALEKYKVTIFGTS 271

Query: 259 VPTIHQIVLDRHVAKPEP-VYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEAT 317
            PT   +     +   EP     LR + S    L P        A G  +L+ Y  TE  
Sbjct: 272 -PTF--LRRLMKLGLGEPYDLSSLRVLGSAGEPLNPEAFEWFYSALGVWILDIYGQTETG 328

Query: 318 HLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPN--VTKGYK 374
               +   P     K GS G P+ G  +  +D+ G P   G  GE+ +R P   +   Y 
Sbjct: 329 MGFIAGRPPV----KNGSSGLPLPGYAVRRVDDEGNPVPPG-VGELVVRLPWPGMALTYW 383

Query: 375 NNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
           N+PE  K A+   W+ TGD    D DGY  L GR  ++I   G
Sbjct: 384 NDPERYKEAYFGRWYRTGDWAERDEDGYFWLHGRSDDVIKVSG 426

Length = 528

>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase

 Score =  192 bits (490), Expect = 1e-55
 Identities = 139/426 (32%), Positives = 195/426 (45%), Gaps = 46/426 (10%)

Query: 14  IDQFSSKRAL--SVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIM 71
           + +FS +  L    +G+   TY+ +  L  R A+ L   GI  GDVV L  PN  EFV+ 
Sbjct: 33  LSEFSDRPCLIDGATGR-VYTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLA 91

Query: 72  FLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATAT 131
           FL   R  A     N  YTP E       S +KL++T +                  T  
Sbjct: 92  FLGASRRGAVTTTANPFYTPAEIAKQAKASGAKLIITQS---CYVDKLKGLAEDDGVTVV 148

Query: 132 LLDADSELTLSLAH-SESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASV 190
            +D   E  L  +  +++D N + ++   P DV    ++SGTT  PKGV LT   L  SV
Sbjct: 149 TIDDPPEGCLHFSELTQADENELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSV 208

Query: 191 S--------NIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSAS 242
           +        N+         D  + VLP+FH++ + + LL     GAA+ +    +F   
Sbjct: 209 AQQVDGENPNL----YFHSDDVILCVLPMFHIYSLNSVLLCGLRVGAAILIMP--KFEIG 262

Query: 243 TFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPK-----LRFIRSCSASLAPVILS 297
              + + ++     T  P +  IVL   +AK  PV  K     +R + S +A L      
Sbjct: 263 ALLELIQRHKV---TIAPFVPPIVLA--IAK-SPVVEKYDLSSIRMVLSGAAPLG----K 312

Query: 298 RLEEAFGAPVLEA-----YAMTEATHLMSSNP--LPEDGPHKPGSVGRPV-GQEIAILD- 348
            LE+AF A +  A     Y MTEA  +++       E  P K GS G  V   E+ I+D 
Sbjct: 313 ELEDAFRAKLPNAVLGQGYGMTEAGPVLAMCLAFAKEPFPVKSGSCGTVVRNAELKIVDP 372

Query: 349 EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAF-LFGWFHTGDIGYFDSDGYLHLVG 407
           E G        GE+CIRGP + KGY N+PEA  +     GW HTGDIGY D D  L +V 
Sbjct: 373 ETGASLPRNQPGEICIRGPQIMKGYLNDPEATANTIDKDGWLHTGDIGYIDDDDELFIVD 432

Query: 408 RIKELI 413
           R+KELI
Sbjct: 433 RLKELI 438

Length = 537

>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)

 Score =  190 bits (486), Expect = 5e-55
 Identities = 133/468 (28%), Positives = 184/468 (39%), Gaps = 99/468 (21%)

Query: 21  RALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARA 80
                  +  LTY+ +       A+RL A G   GD V L  P  ++FV  F   + A A
Sbjct: 14  LFDDDDEEETLTYAELDRRARAIAARLQALG-APGDRVLLLAPPGLDFVAAFFGCLYAGA 72

Query: 81  TAAPLNAAYTPDEFEFY-------LSDSESKLLLTPAEGNAAAQAAASKLNISHATATLL 133
            A P   A  P     +       L+D+ ++ +LT +   AA +AA +            
Sbjct: 73  IAVP---APPPRRLGRHLARLAAILADAGARAVLTTSAVLAALRAALAAPAALLLLLIAA 129

Query: 134 DADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNI 193
           D  + L                   DP D+A   +TSG+T  PKGV +T  NL A++  I
Sbjct: 130 DDLAAL---------AAADWRPPPPDPDDIAFLQYTSGSTGAPKGVMVTHGNLLANLRAI 180

Query: 194 KSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTF-WQDMI-KY 251
              + L   D  V  LPL+H  G++ GLL    AG  V L +   F      W + I +Y
Sbjct: 181 ARAFGLDPDDVGVSWLPLYHDMGLIGGLLQPLYAGFPVVLMSPLAFLRRPLRWLEAISRY 240

Query: 252 NATWYTAVPT-IHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-GA-PV- 307
            AT  +  P   + + + R   + E               LA + LS    AF GA PV 
Sbjct: 241 RATV-SGAPNFAYDLCVRR--VRDE--------------QLAGLDLSSWRVAFNGAEPVR 283

Query: 308 ---LEA------------------YAMTEATHLMSSNP--------------LPEDGPHK 332
              LE                   Y + EAT  +S  P              L   G   
Sbjct: 284 ADTLERFAERFAPAGFRPEAFLPCYGLAEATLAVSGGPPGAGPVVLRVDRDALARGGAAV 343

Query: 333 PG----------SVGRPV-GQEIAILDEIG-VPQEGGAKGEVCIRGPNVTKGYKNNPEAN 380
                       S GRP+ G E+ I+D     P   G  GE+ +RGP+V  GY N PEA 
Sbjct: 344 AAADGAAARELVSCGRPLPGHEVRIVDPETRRPLPDGEVGEIWVRGPSVAAGYWNRPEAT 403

Query: 381 KSAFLF-------GWFHTGDIGYFDSDGYLHLVGRIKEL-INRGGNLH 420
              F         GW  TGD+G+   DG L++ GR+K+L I RG N +
Sbjct: 404 AETFGARLATDEGGWLRTGDLGFLH-DGELYVTGRLKDLIIIRGRNHY 450

FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score =  184 bits (470), Expect = 1e-53
 Identities = 109/390 (27%), Positives = 164/390 (42%), Gaps = 57/390 (14%)

Query: 31  LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
           LTY  +H+L  R A+ L A G++ GD V L  P++ E V  FLA ++A A A  LN   T
Sbjct: 11  LTYRELHDLANRFANVLRALGVSPGDRVLLLLPDSPELVAAFLACLKAGAVAVALNPLLT 70

Query: 91  PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDT 150
           P + E  L DS + LL+T                                          
Sbjct: 71  PQDLEHILDDSGAALLVT------------------------------------------ 88

Query: 151 NAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNI-KSVYKLTESDSTVIVL 209
                   +  D+A +L+TSGTT +PKGV     +         + +  L   D      
Sbjct: 89  --------EADDIAYWLYTSGTTGKPKGVMHRHRDPLTFAEAFARELLGLQPGDRIFSSS 140

Query: 210 PLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDR 269
            LF  +G+   LL    +GA+  L   G  +       + ++  T    VP +++ +L+ 
Sbjct: 141 KLFFAYGLGNSLLFPLFSGASAVL-LPGWPTPEAVLDLLARHRPTVLFGVPALYRALLES 199

Query: 270 HVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDG 329
                 P++  +R   S   +L   +  R  EA G  +L+    TE  H+  SN     G
Sbjct: 200 GAG-SAPLFRSVRLCVSAGEALPAGLAERWAEATGIEILDGIGSTEVLHIFISN---RPG 255

Query: 330 PHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGW 388
             +PG+ GRPV G E  ++DE G     G  G++ +RGP++  GY N PE  +     GW
Sbjct: 256 AARPGTTGRPVPGYEARLVDESGREVPAGTVGDLWVRGPSLAPGYWNLPEKTQRTLRDGW 315

Query: 389 FHTGDIGYFDSDGYLHLVGRIKELINRGGN 418
             TGD    D+DG+    GR  ++I   G 
Sbjct: 316 LRTGDRFSRDADGWYRYQGRADDMIKVSGQ 345

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  179 bits (455), Expect = 2e-52
 Identities = 100/270 (37%), Positives = 133/270 (49%), Gaps = 16/270 (5%)

Query: 160 PSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLA 219
           P D+A + HT GTT  PK    +  N  A+      +  L   D  +  LPLFHV G + 
Sbjct: 1   PDDLAAYFHTGGTTGAPKLARHSHRNEVANAWMAALLSGLGPGDVLLNGLPLFHVGGAIV 60

Query: 220 GLLSSFAAGAAVTLPAAGRFS----ASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPE 275
             L+  A GA V LP    F      + FW+ + +Y  T  +AVPT+   +L   +   +
Sbjct: 61  TGLAPLARGATVVLPTPSGFRNPAVVANFWKIVERYRVTLLSAVPTVLAALLQVPLGDAD 120

Query: 276 PVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGS 335
                LR+  + +A L   +  R E   G PV+E Y MTE T + + NP    GP +PGS
Sbjct: 121 I--SSLRYALTGAAPLPVEVARRFEAVTGVPVVEGYGMTEGTGVSAINP--RGGPRRPGS 176

Query: 336 VGRPV-GQ--EIAILDEIGVPQEG---GAKGEVCIRGPNVTKGYKNNPEANKSAFLF-GW 388
           VG  +      +A LD  G        G  G + IRGPNV  GY N    N  A L  GW
Sbjct: 177 VGLRLPYTRVRVAKLDAGGALGRDCAPGEVGVLAIRGPNVFPGYLN-DAHNAGARLEDGW 235

Query: 389 FHTGDIGYFDSDGYLHLVGRIKELINRGGN 418
            +TGD+G  D+DGYL L GR K+LI RGG+
Sbjct: 236 LNTGDLGRIDADGYLWLTGRAKDLIIRGGH 265

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359

>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase

 Score =  179 bits (457), Expect = 7e-52
 Identities = 117/393 (29%), Positives = 181/393 (46%), Gaps = 43/393 (10%)

Query: 32  TYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTP 91
           T+  +       A  L A GI +G  VAL   N++E V++  A +   A  A LN   T 
Sbjct: 1   TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTE 60

Query: 92  DEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTN 151
           +E    L D + +LLLT            S L      A   D+   +  +      +T+
Sbjct: 61  NERTNQLEDLDVQLLLTD-----------SLLEEKDFQA---DSLDRIEAA---GRYETS 103

Query: 152 AISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPL 211
             +    D   +A  + TSGTT +PK VP T  N  AS    K     TE D+ ++ LPL
Sbjct: 104 LSASFNMD--QIATLMFTSGTTGKPKAVPHTFRNHYASAVGSKENLGFTEDDNWLLSLPL 161

Query: 212 FHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIK-YNATWYTAVPTIHQIVLDRH 270
           +H+ G L+ L      GA + +    +F+      +MI     T  + VPT     L+R 
Sbjct: 162 YHISG-LSILFRWLIEGATLRIVD--KFNQ---LLEMIANERVTHISLVPTQ----LNRL 211

Query: 271 VAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTE-ATHLMSSNPLPEDG 329
           + +        + +   SA  AP+I    +   G P+  +Y MTE  + + ++ P   + 
Sbjct: 212 LDEGGHNENLRKILLGGSAIPAPLIEEAQQY--GLPIYLSYGMTETCSQVTTATP---EM 266

Query: 330 PHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGW 388
            H    VGRP+ G+EI    +I V  + G  GE+ ++G N+ KGY    E   +    GW
Sbjct: 267 LHARPDVGRPLAGREI----KIKVDNKEGH-GEIMVKGANLMKGYLYQGELTPAFEQQGW 321

Query: 389 FHTGDIGYFDSDGYLHLVGRIKELINRGG-NLH 420
           F+TGDIG  D +G+L+++GR  +LI  GG N++
Sbjct: 322 FNTGDIGELDGEGFLYVLGRRDDLIISGGENIY 354

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score =  181 bits (462), Expect = 1e-51
 Identities = 131/431 (30%), Positives = 195/431 (45%), Gaps = 64/431 (14%)

Query: 31  LTYSRIHELVERAASRLV-AAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAY 89
           ++Y  + E  ER A  L    G+  GD V L   N+ +FVI + A++RA A   P+N   
Sbjct: 36  ISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILRANAVVVPVNPMN 95

Query: 90  TPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATAT----LLDADSELTL-SLA 144
             +E   Y++DS +++ +  +E       A   L + H         L A+ E+ + +  
Sbjct: 96  REEELAHYVTDSGARVAIVGSELAPKVAPAVGNLRLRHVIVAQYSDYLPAEPEIAVPAWL 155

Query: 145 HSESDTNAISK------------------LTNDPSDVALFLHTSGTTSRPKGVPLTQNNL 186
            +E    A++                    T  P D+A+  +TSGTT  PKG   T   +
Sbjct: 156 RAEPPLQALAPGGVVAWKEALAAGLAPPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTV 215

Query: 187 AASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAA-VTLP-----AAGRFS 240
            A+          T     + VLPLFHV GM+  + +   AGA  V +P     AA R  
Sbjct: 216 MANAVGSVLWSNSTPESVVLAVLPLFHVTGMVHSMNAPIYAGATVVLMPRWDREAAARL- 274

Query: 241 ASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKP---EPVYPKLRFIRSCSASLAPVILS 297
                  + +Y  T +T +PT   +V+D  +A P   E     LR+I    A++   +  
Sbjct: 275 -------IERYRVTHWTNIPT---MVVD-FLASPGLAERDLSSLRYIGGGGAAMPEAVAE 323

Query: 298 RLEEAFGAPVLEAYAMTE---ATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILD-EIG- 351
           RL+E  G   +E Y +TE    TH   SNP   D P K   +G P  G +  ++D E   
Sbjct: 324 RLKELTGLDYVEGYGLTETMAQTH---SNPP--DRP-KLQCLGIPTFGVDARVIDPETLE 377

Query: 352 -VPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAF--LFG--WFHTGDIGYFDSDGYLHLV 406
            +P   G  GE+ + GP V KGY N PEA   AF  + G  +F TGD+G  D +GY  + 
Sbjct: 378 ELPP--GEVGEIVVHGPQVFKGYWNRPEATAEAFIEIDGKRFFRTGDLGRMDEEGYFFIT 435

Query: 407 GRIKELINRGG 417
            R+K +IN  G
Sbjct: 436 DRLKRMINASG 446

Length = 546

>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed

 Score =  179 bits (457), Expect = 6e-51
 Identities = 121/407 (29%), Positives = 182/407 (44%), Gaps = 27/407 (6%)

Query: 32  TYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTP 91
           TYS +     R A+ L+A GI  GD VA   P   EF I++LA ++  A + PL  ++  
Sbjct: 51  TYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLACLKVGAVSVPLLPSWRE 110

Query: 92  DEFEFYLSDSESKLLLTP---AEGNAAAQAAASKLNISHAT-ATLLD----ADSELTLS- 142
            E  + L+  ++K+   P    +          +  +        +D    A S L+LS 
Sbjct: 111 AELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQIVGVDKLAPATSSLSLSQ 170

Query: 143 -LAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTE 201
            +A  E  T AI   T    ++A  L TSGT   PKGV LT NN+ AS     +   LT 
Sbjct: 171 IIADYEPLTTAI---TTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARLNLTW 227

Query: 202 SDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATW-YTAVP 260
            D  ++  PL H  G L G+ + F  GA   L     F+       + +   T    A P
Sbjct: 228 QDVFMMPAPLGHATGFLHGVTAPFLIGARSVL--LDIFTPDACLALLEQQRCTCMLGATP 285

Query: 261 TIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEAT-HL 319
            I+ ++    + K       LRF   C  +  P  ++R  +  G  +L  Y  TE++ H 
Sbjct: 286 FIYDLL--NLLEKQPADLSALRFFL-CGGTTIPKKVARECQQRGIKLLSVYGSTESSPHA 342

Query: 320 MSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPE 378
           +    L +       + G    G EI ++DE       G +GE   RGPNV  GY + PE
Sbjct: 343 VV--NLDDPLSRFMHTDGYAAAGVEIKVVDEARKTLPPGCEGEEASRGPNVFMGYLDEPE 400

Query: 379 A-NKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESIS 424
              ++    GW+++GD+   D  GY+ + GR K++I RGG   E+IS
Sbjct: 401 LTARALDEEGWYYSGDLCRMDEAGYIKITGRKKDIIVRGG---ENIS 444

Length = 547

>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated

 Score =  180 bits (457), Expect = 7e-51
 Identities = 137/442 (30%), Positives = 212/442 (47%), Gaps = 44/442 (9%)

Query: 10  LNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFV 69
           + Q+  ++  K+AL   GK D+T+S  H+ V+R A+ L   G+  GD VA+  PN  + V
Sbjct: 30  VEQMASRYPEKKALHFLGK-DITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAV 88

Query: 70  IMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHAT 129
           I +   + A       N  YT  E E+ L DS +K++L             S   I H  
Sbjct: 89  IGYYGTLLAGGIVVQTNPLYTERELEYQLHDSGAKVILCLDLVFPRVTNVQSATKIEHVI 148

Query: 130 ATLLDAD---------------SELTLSLAHSESDT----NAISKLTN-------DP-SD 162
            T + AD                +  L +  SES+T    N++ K  N       DP +D
Sbjct: 149 VTRI-ADFLPFPKNLLYPFVQKKQSNLVVKVSESETIHLWNSVEKEVNTGVEVPCDPEND 207

Query: 163 VALFLHTSGTTSRPKGVPLTQNNLAA-SVSNIKSVYKLTESDSTVI-VLPLFHVHGMLAG 220
           +AL  +T GTT  PKGV LT  NL + ++  ++ +Y   E +  V+ VLP FHV+GM A 
Sbjct: 208 LALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWLYNCKEGEEVVLGVLPFFHVYGMTAV 267

Query: 221 LLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPK 280
           +  S   G  + L    +F     ++ + K+  T +   PTI+  +L+  + K   +   
Sbjct: 268 MNLSIMQGYKMVL--IPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPLLKEYDISS- 324

Query: 281 LRFIRSCSASLAPV---ILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVG 337
              IR+C +  AP+   +  + E   G  ++E Y +TE++ +  SN L E     PGS+G
Sbjct: 325 ---IRACISGSAPLPVEVQEKFETVTGGKLVEGYGLTESSPVTHSNFLWEK--RVPGSIG 379

Query: 338 RPVGQEIAILD--EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIG 395
            P     A++   E G     G  GE+ ++GP + KGY N PE   +    GW HTGD+G
Sbjct: 380 VPWPDTEAMIMSLETGEALPPGEIGEIVVKGPQIMKGYWNKPEETAAVLQDGWLHTGDVG 439

Query: 396 YFDSDGYLHLVGRIKELINRGG 417
           Y D DG+ ++  R K++I   G
Sbjct: 440 YMDEDGFFYVKDRKKDMIVASG 461

Length = 563

>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated

 Score =  176 bits (447), Expect = 1e-49
 Identities = 123/402 (30%), Positives = 183/402 (45%), Gaps = 28/402 (6%)

Query: 30  DLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAY 89
             T+  + + V   A  L   G+  GD V +   N  EFV   LA     A A P+N   
Sbjct: 42  TTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAIAVPVNFRL 101

Query: 90  TPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLL---DADSELTLSLAHS 146
           TP E  F +SD  + +++T A   A A  A +  +I    +T++    +  +  L     
Sbjct: 102 TPPEIAFLVSDCGAHVVVTEA---ALAPVATAVRDIVPLLSTVVVAGGSSDDSVLGYEDL 158

Query: 147 ESDTNAISKLTNDPSDV-ALFLHTSGTTSRPKGVPLTQNNLAA-SVSNIKSVYKLTESDS 204
            ++        + P+D  AL ++TSGTT RPKG  LT  NL   +++ +++      SD 
Sbjct: 159 LAEAGPAHAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTNGADINSDV 218

Query: 205 TVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQ 264
             + +PLFH+ G +  +L     GA   +   G F        +     T    VP   Q
Sbjct: 219 GFVGVPLFHIAG-IGSMLPGLLLGAPTVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQ 277

Query: 265 IVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVLEAYAMTEATHLMSSN 323
            V     A+P  +   LR +   +A  +  +L ++   F  A +L A+  TE    MS  
Sbjct: 278 AVCAEQQARPRDL--ALRVLSWGAAPASDTLLRQMAATFPEAQILAAFGQTE----MS-- 329

Query: 324 P-----LPEDGPHKPGSVGRPVGQEIA-ILDEI--GVPQEGGAKGEVCIRGPNVTKGYKN 375
           P     L ED   K GSVG+ +    A ++DE    VP   G  GE+  R P +  GY N
Sbjct: 330 PVTCMLLGEDAIRKLGSVGKVIPTVAARVVDENMNDVPV--GEVGEIVYRAPTLMSGYWN 387

Query: 376 NPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
           NPEA   AF  GWFH+GD+   D +GY+ +V R K++I  GG
Sbjct: 388 NPEATAEAFAGGWFHSGDLVRQDEEGYVWVVDRKKDMIISGG 429

Length = 542

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score =  174 bits (443), Expect = 4e-49
 Identities = 128/427 (29%), Positives = 189/427 (44%), Gaps = 32/427 (7%)

Query: 9   LLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVE- 67
            L Q   +F  + AL V G    T+  I   V+  A+ L A G+  GD + +   N  + 
Sbjct: 12  FLRQAARRFPDRIAL-VWGDRSWTWREIDARVDALAAALAARGVRKGDRILVHSRNCNQM 70

Query: 68  FVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISH 127
           F  MF A  R  A   P N   TPDE  +    S ++ ++     +    AAA       
Sbjct: 71  FESMF-AAFRLGAVWVPTNFRQTPDEVAYLAEASGARAMI--CHADFPEHAAA------- 120

Query: 128 ATATLLDADSELTLSLAHSESDTNAI---------SKLTNDPSDVALFLHTSGTTSRPKG 178
             A   D    + +  A +  D  A+         +    D  D   F  TSGTT RPK 
Sbjct: 121 VRAASPDLTHVVAIGGARAGLDYEALVARHLGARVANAAVDHDDPCWFFFTSGTTGRPKA 180

Query: 179 VPLTQNNLAASVSN--IKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAA 236
             LT   +A  ++N     +   TE D++++V PL H  G+    L   A GAA  L  +
Sbjct: 181 AVLTHGQMAFVITNHLADLMPGTTEQDASLVVAPLSHGAGIHQ--LCQVARGAATVLLPS 238

Query: 237 GRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVIL 296
            RF  +  W  + ++  T    VPTI ++ L  H A     +  LR++    A +     
Sbjct: 239 ERFDPAEVWALVERHRVTNLFTVPTILKM-LVEHPAVDRYDHSSLRYVIYAGAPMYRADQ 297

Query: 297 SRLEEAFGAPVLEAYAMTEATHLMSSNP----LPEDGPH-KPGSVGRP-VGQEIAILDEI 350
            R     G  +++ + + E T  ++  P      EDGP  + G+ G    G E+ I D+ 
Sbjct: 298 KRALAKLGKVLVQYFGLGEVTGNITVLPPALHDAEDGPDARIGTCGFERTGMEVQIQDDE 357

Query: 351 GVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIK 410
           G     G  GE+C+ GP V  GY NNPEAN  AF  GWF TGD+G+ D+ G+L++ GR  
Sbjct: 358 GRELPPGETGEICVIGPAVFAGYYNNPEANAKAFRDGWFRTGDLGHLDARGFLYITGRAS 417

Query: 411 ELINRGG 417
           ++   GG
Sbjct: 418 DMYISGG 424

Length = 528

>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated

 Score =  173 bits (441), Expect = 4e-49
 Identities = 128/408 (31%), Positives = 182/408 (44%), Gaps = 33/408 (8%)

Query: 21  RALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARA 80
           RA  V    +++Y+  H+ + +AA  L A GI  GDVVAL   N+  F+ +  A     A
Sbjct: 18  RAALVYRDQEISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAASYLGA 77

Query: 81  TAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNI-SHATATLLDADSEL 139
              P+N     DE  + L D+ +KLLL   E +A       K+ I + A A         
Sbjct: 78  VFLPINYRLAADEVAYILGDAGAKLLLVDEEFDAIVALETPKIVIDAAAQA------DSR 131

Query: 140 TLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKL 199
            L+    E    A       P+D+   ++TSGTT RPKGV  +  NL     +      L
Sbjct: 132 RLAQGGLEIPPQAAVA----PTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIALGL 187

Query: 200 TESDSTVIVLPLFHVHGM-LAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKY--NATWY 256
           T S+  ++V PL+HV    L G+   +  G   TL     F        + ++     W 
Sbjct: 188 TASERLLVVGPLYHVGAFDLPGIAVLWVGG---TLRIHREFDPEAVLAAIERHRLTCAWM 244

Query: 257 TAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEE---AF-GAPVLEAYA 312
             V      +L R +  P+     L  +  C         SR+ +    F  A  ++AY 
Sbjct: 245 APV------MLSRVLTVPDRDRFDLDSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYG 298

Query: 313 MTEATHLMSSNPLPEDGPH--KPGSVGRPVGQ-EIAILDEIGVPQEGGAKGEVCIRGPNV 369
           +TE     S + L E G    K GS GR +   EI I D  G       KGE+C+RGP V
Sbjct: 299 LTET---CSGDTLMEAGREIEKIGSTGRALAHVEIRIADGAGRWLPPNMKGEICMRGPKV 355

Query: 370 TKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
           TKGY  +PE    AF   WF +GD+GY D +G+L+L  R K++I  GG
Sbjct: 356 TKGYWKDPEKTAEAFYGDWFRSGDVGYLDEEGFLYLTDRKKDMIISGG 403

Length = 497

>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated

 Score =  173 bits (440), Expect = 4e-49
 Identities = 124/407 (30%), Positives = 179/407 (43%), Gaps = 50/407 (12%)

Query: 20  KRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRAR 79
             A+ + G+  L+ S   +L   A +  VA  +     VA+    T+  V+  +  + A 
Sbjct: 16  ADAVRIGGRV-LSRS---DLAGAATA--VAERVAGARRVAVLATPTLATVLAVVGALIAG 69

Query: 80  ATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSEL 139
               P+       E    L+DS ++  L PA  + A                        
Sbjct: 70  VPVVPVPPDSGVAERRHILADSGAQAWLGPAPDDPAG----------------------- 106

Query: 140 TLSLAHSESDTNAISKLTN---DPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSV 196
              L H     +A S       DP   AL ++TSGTT  PKGV L++  +AA +  +   
Sbjct: 107 ---LPHVPVRLHARSWHRYPEPDPDAPALIVYTSGTTGPPKGVVLSRRAIAADLDALAEA 163

Query: 197 YKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWY 256
           ++ T  D  V  LPLFHVHG++ G+L     G        GR +   + Q +     T Y
Sbjct: 164 WQWTADDVLVHGLPLFHVHGLVLGVLGPLRIGNRFV--HTGRPTPEAYAQAL-SEGGTLY 220

Query: 257 TAVPTI-HQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTE 315
             VPT+  +I  D   A+        R + S SA+L   +  RL    G   +E Y MTE
Sbjct: 221 FGVPTVWSRIAADPEAAR---ALRGARLLVSGSAALPVPVFDRLAALTGHRPVERYGMTE 277

Query: 316 ATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIG--VPQEGGAKGEVCIRGPNVTKG 372
               +S+     DG  +PG VG P+ G E  ++DE G  VP +G   GE+ +RGP +  G
Sbjct: 278 TLITLSTRA---DGERRPGWVGLPLAGVETRLVDEDGGPVPHDGETVGELQVRGPTLFDG 334

Query: 373 YKNNPEANKSAFLF-GWFHTGDIGYFDSDGYLHLVGRIK-ELINRGG 417
           Y N P+A  +AF   GWF TGD+   D DG   +VGR   +LI  GG
Sbjct: 335 YLNRPDATAAAFTADGWFRTGDVAVVDPDGMHRIVGRESTDLIKSGG 381

Length = 471

>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  169 bits (431), Expect = 6e-49
 Identities = 86/267 (32%), Positives = 130/267 (48%), Gaps = 13/267 (4%)

Query: 160 PSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLA 219
             D+A  ++TSG+T  PKGV L+  NL A   +I    +LTE D  + VLP    +G L+
Sbjct: 1   DDDLAAIIYTSGSTGEPKGVMLSHRNLTAGARSIAQYLELTEDDRILAVLPFSFDYG-LS 59

Query: 220 GLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYP 279
            LL++F  G  + L +   F      + + K   T +  VPT    +L       E  +P
Sbjct: 60  QLLTAFRVGGTLVLESRFAFPR-DVLKHLAKERITGFAGVPTTWAQLLRLDPLARED-FP 117

Query: 280 KLRFIRSCSASLAPVILSRLEEAF-GAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGR 338
            LR++ +   +L    + +L  AF  A +   Y +TEA    S+   PE+   +P S+G+
Sbjct: 118 SLRYLTNAGGALPAKTILQLRRAFPDAKLFSMYGLTEAFR--STYLPPEELDRRPDSIGK 175

Query: 339 PV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFG------WFHT 391
            +   E+ ++DE G     G  GE+  RG NV KGY N+PEA       G        +T
Sbjct: 176 AIPNVELWVVDEDGNRCAPGEVGELVHRGANVMKGYWNDPEATAERLRPGPLPGEIVLYT 235

Query: 392 GDIGYFDSDGYLHLVGRIKELINRGGN 418
           GD+   D +GYL+ VGR  ++I   G 
Sbjct: 236 GDLVRMDEEGYLYFVGRKDDMIKTRGY 262

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score =  173 bits (441), Expect = 7e-49
 Identities = 133/438 (30%), Positives = 195/438 (44%), Gaps = 51/438 (11%)

Query: 15  DQFSSKRAL---SVSGKF-DLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVI 70
           D +  K AL   S  G     +Y  ++E + R A+   + GI  GD VAL   N  EF+ 
Sbjct: 18  DVYGHKTALIFESSGGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIF 77

Query: 71  MFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEG----NAAAQAAASKLN-- 124
            +  + +  A   P+NA    +E  + L +S++ LL+T A+         Q  A+ L   
Sbjct: 78  CWFGLAKIGAIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLRHI 137

Query: 125 -ISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQ 183
            ++       D  S  T   A   +       L+ D  D A  L TSGTTSRPKGV +T 
Sbjct: 138 CLTRVALPADDGVSSFTQLKAQQPATLCYAPPLSTD--DTAEILFTSGTTSRPKGVVITH 195

Query: 184 NNLAASVSNIKSVYK--LTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSA 241
            NL    +   S ++  L + D  + V+P FH+       +++F+AGA  T     ++SA
Sbjct: 196 YNL--RFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTAAMAAFSAGA--TFVLLEKYSA 251

Query: 242 STFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYP-----KLRFIR-----SCSASL 291
             FW  + KY AT    +P + + ++       +P         LR +      S     
Sbjct: 252 RAFWGQVCKYRATITECIPMMIRTLM------VQPPSANDRQHCLREVMFYLNLSDQEKD 305

Query: 292 APVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILDEI 350
           A       EE FG  +L +Y MTE    +  +  P D    P S+GRP    E  I D+ 
Sbjct: 306 A------FEERFGVRLLTSYGMTETIVGIIGDR-PGDKRRWP-SIGRPGFCYEAEIRDDH 357

Query: 351 GVPQEGGAKGEVCIRG-PNVT--KGYKNNPEANKSAFLF-GWFHTGDIGYFDSDGYLHLV 406
             P   G  GE+CI+G P  T  K Y  +P+A        GW HTGD GY D +G+ + V
Sbjct: 358 NRPLPAGEIGEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTGYVDEEGFFYFV 417

Query: 407 GRIKELINRGGNLHESIS 424
            R   +I RGG   E++S
Sbjct: 418 DRRCNMIKRGG---ENVS 432

Length = 517

>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score =  173 bits (441), Expect = 8e-49
 Identities = 120/418 (28%), Positives = 186/418 (44%), Gaps = 36/418 (8%)

Query: 31  LTYSRIHELVERAASRLVAAGINAGDVVALTFP-NTVEFVIMFLAVIRARATAAPLNAAY 89
            TY+  +  V R A+ L + G+  GD VA T   NT   + ++ AV    A    LN   
Sbjct: 26  YTYADFYRRVRRLANALESLGVKPGDRVA-TLAWNTHRHLELYFAVPGMGAVLHTLNPRL 84

Query: 90  TPDEFEFYLSDSESKLL-----LTPAEGNAAAQAAASKLNISHATATLLDADSELTLS-- 142
           +P++  + ++ +E K++       P     A +    K  + +  A + +       +  
Sbjct: 85  SPEQIAYIINHAEDKVIFVDDDFLPLLEAIAPRLPTVKAVVVYDDADMPETSLPNVYAYE 144

Query: 143 -LAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLT--QNNLAASVSNIKSVYKL 199
            L   ES      +L  D +  A   +TSGTT  PKGV  +     L    S +     L
Sbjct: 145 ELLEEESPEYEWPEL--DENTAAGLCYTSGTTGNPKGVVYSHRSLVLHTLASALPDSLGL 202

Query: 200 TESDSTVIVLPLFHVHGMLAGL-LSSFAAGAAVTLPAAGRF-SASTFWQDMIKYNATWYT 257
           +ESD+ + V+P+FHV+    GL  ++   GA + LP  GR+   ++    + +   T   
Sbjct: 203 SESDTVLPVVPMFHVNAW--GLPYAATMVGAKLVLP--GRYLDPASLLDLIEEEKVTVSA 258

Query: 258 AVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEAT 317
            VPTI   +L+ ++         LR +     S  P  L    E  G  V+ A+ MTE +
Sbjct: 259 GVPTIWLGLLN-YLEANGKDLSSLRRV-VVGGSALPRSLIEKLEERGVEVIHAWGMTETS 316

Query: 318 HLMSSNPLPEDGPHKPG--------SVGRPV-GQEIAILDEIG--VPQEGGAKGEVCIRG 366
            L + + L       P           GRPV G E+ I+D+ G  +P +G   GE+ +RG
Sbjct: 317 PLGTVSRLKPHLVDLPEEEKLELRAKQGRPVPGVELRIVDDEGNELPWDGKTVGELVVRG 376

Query: 367 PNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESIS 424
           P VT  Y  +PE  +     GWF TGD+   D DGY+ +  R K++I  GG   E IS
Sbjct: 377 PWVTGSYYKDPEKTEELTRDGWFRTGDVAVIDEDGYIQITDRAKDVIKSGG---EWIS 431

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517

>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain

 Score =  169 bits (431), Expect = 3e-48
 Identities = 107/396 (27%), Positives = 158/396 (39%), Gaps = 36/396 (9%)

Query: 32  TYSRIHELVERAASRLVA-AGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
           TY  + E   R A  L A  G+  GD VA+    + E V+  LAV++A A   PL+ AY 
Sbjct: 1   TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYP 60

Query: 91  PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDT 150
            +   F L D+ ++LLLT     A+  A      I      L   D         + S  
Sbjct: 61  AERLAFILEDAGARLLLT-DSALASRLAGLVLPVILLDPLELAALDDAPAPPPPDAPS-- 117

Query: 151 NAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLP 210
                    P D+A  ++TSG+T RPKGV +T  +L   ++ +   Y L   D  +    
Sbjct: 118 --------GPDDLAYVIYTSGSTGRPKGVVVTHRSLVNLLAWLARRYGLDPDDRVLQFAS 169

Query: 211 L---FHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMI-KYNATWYTAVPTIHQIV 266
           L     V  +   LL   A    V  P       +     +I ++  T     P+    +
Sbjct: 170 LSFDASVEEIFGALL---AGATLVVPPEDEERDDAALLAALIAEHPVTVLNLTPS----L 222

Query: 267 LDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFG-APVLEAYAMTEATHLMSSNPL 325
           L    A   P    LR +     +L P ++ R       A ++  Y  TE T   ++  +
Sbjct: 223 LALLAAALPPALASLRLVILGGEALTPALVDRWRARGPGARLINLYGPTETTVWSTATLV 282

Query: 326 PEDGPHKPGSV--GRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKS 382
             D   +   V  GRP+    + +LD+   P   G  GE+ I GP V +GY N PE    
Sbjct: 283 DPDDAPRESPVPIGRPLANTRLYVLDDDLRPVPVGVVGELYIGGPGVARGYLNRPELTAE 342

Query: 383 AFLFGWF---------HTGDIGYFDSDGYLHLVGRI 409
            F+   F          TGD+  +  DG L  +GRI
Sbjct: 343 RFVPDPFAGGDGARLYRTGDLVRYLPDGNLEFLGRI 378

This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409

>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase

 Score =  171 bits (435), Expect = 4e-48
 Identities = 112/413 (27%), Positives = 176/413 (42%), Gaps = 52/413 (12%)

Query: 30  DLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAY 89
           + T++++ +   R A+ L + G+  GD +A+   N  E++I  LA+  A   + PL    
Sbjct: 6   EYTWAQVADQARRIAAALQSLGLEPGDRIAILSKNCAEWIIADLAIWMAGHVSVPLYPTL 65

Query: 90  TPDEFEFYLSDSESKLLLTPAEGNAAAQAAA----SKLNISHATATLLDADSELTLSLAH 145
           T +   + L  S++K L      +  A  A         I    +TL D      L  A 
Sbjct: 66  TAETIRYVLEHSDAKALFVGKLDDWDAMKAGVPEGLPTIILFPYSTLKDHYKWDDLLAAT 125

Query: 146 SESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDST 205
                        +P D+A  ++TSGTT +PKGV L+    A +      +  LT +D  
Sbjct: 126 EPLQGR----PLPEPEDLATIVYTSGTTGQPKGVMLSFGAFAFAAQGTIEIIGLTPNDRL 181

Query: 206 VIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTI--- 262
           +  LPL H+   +     S  +GA V        S  TF  D+ +   T + +VP +   
Sbjct: 182 LSYLPLAHIAERVIVEGGSLYSGAEVFFV----ESLDTFAADLQRARPTVFFSVPRLWTK 237

Query: 263 --HQI-------VLDRHVAKP---EPVYPKL---------RFIRSCSASLAPVILSRLEE 301
               I        L+  +  P     V  K+         R   S +A + P +++   +
Sbjct: 238 FQQGILAKLPPEKLNLLLKIPILSSLVKKKILKGLGLDQARLAGSGAAPMPPALIAWYRK 297

Query: 302 AFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKG 360
             G P+ E Y MTE     + N   +    + G+VG+P+ G E+ I ++          G
Sbjct: 298 -LGLPICEGYGMTENFAYSTLNYPGDR---RIGTVGKPIPGVELKISED----------G 343

Query: 361 EVCIRGPNVTKGYKNNPEANKSAFLF-GWFHTGDIGYFDSDGYLHLVGRIKEL 412
           E+ IR P +  GY  +PE    AF   GW HTGD G  D DG+L + GR+KEL
Sbjct: 344 EILIRSPGLMSGYYKDPEKTAEAFTEDGWLHTGDKGEIDEDGFLKITGRVKEL 396

The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score =  171 bits (436), Expect = 5e-48
 Identities = 118/424 (27%), Positives = 178/424 (41%), Gaps = 50/424 (11%)

Query: 32  TYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTP 91
           TY   ++   R AS L   GI  GDVVA+  PNT   +     V  A A   PLN     
Sbjct: 31  TYRETYDRCRRLASALSKLGIGKGDVVAVLAPNTPAMLEAHFGVPMAGAVLVPLNTRLDA 90

Query: 92  DEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLS--------- 142
           D+  F L+ SE+K+L    E  + A+ A + L+      T +   S              
Sbjct: 91  DDIAFILNHSEAKVLFVDQEFLSLAEEALALLSTKEIIDTEIIVISPAAEDSEEGDYEDL 150

Query: 143 LAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLT-QNNLAASVSNI-------K 194
           LA  + D   I     D  D     +TSGTT  PKGV  T +     ++ N+       +
Sbjct: 151 LAGGDPDPLPIPPD--DEWDPISLNYTSGTTGNPKGVVYTHRGAYLNALGNVIEWGMPDR 208

Query: 195 SVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAA-VTLPAAGRFSASTFWQDMIKYNA 253
            VY  T        LP+FH +G      +  A G   V L    +  A   +  + K+  
Sbjct: 209 PVYLWT--------LPMFHCNGW-CFPWAITAVGGTHVCLR---KVDAPAIYDLIEKHKV 256

Query: 254 TWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAM 313
           T     PT+  ++ +   A   P+   +R + + +    P ++ ++EE  G  V   Y +
Sbjct: 257 THLCGAPTVLNMLANAPEADKLPLPRPVRVMTAGAPP-PPAVIKKMEEL-GFEVTHVYGL 314

Query: 314 TEATHLMSSNPLPEDGPHKPGS----------VGRPVGQEIAILDEIG---VPQEGGAKG 360
           TE    ++      +    P            V     +E+ ++D      VP++G   G
Sbjct: 315 TETYGPITVCEWKPEWDALPAEERARLKARQGVRYVGLEEVDVVDPETMKDVPRDGKTIG 374

Query: 361 EVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLH 420
           E+ +RG  V KGY  NPEA + AF  GWFH+GD+     DGY+ +  R K++I  GG   
Sbjct: 375 EIVMRGNTVMKGYYKNPEATEEAFAGGWFHSGDLAVVHPDGYIEIKDRSKDIIISGG--- 431

Query: 421 ESIS 424
           E+IS
Sbjct: 432 ENIS 435

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

 Score =  168 bits (427), Expect = 1e-46
 Identities = 114/440 (25%), Positives = 172/440 (39%), Gaps = 97/440 (22%)

Query: 31  LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
           ++Y  + E      S L A G+  GD + +   N  E++I   A         PL     
Sbjct: 6   ISYKEVEERALNIGSGLRALGLKPGDKIGIFAENRPEWIITEQACFSQSLVIVPLYDTLG 65

Query: 91  PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLD--ADSELTLSLAHSES 148
            +  E+ L+++E  ++                + + ++   L +    +++  +      
Sbjct: 66  EEAIEYILNETEISIVFC------------DAVKV-YSFEELEELGKKNKVPPTPP---- 108

Query: 149 DTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIV 208
                      P D+A  ++TSGTT  PKGV LT  N+ A V+ I  +       + V +
Sbjct: 109 ----------KPEDLATIMYTSGTTGNPKGVMLTHGNIVAGVAGINKIVPEFIGPTDVYI 158

Query: 209 --LPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTF--WQDMIKYNATWYTAVP---- 260
             LPL H+   +         G  +     G +S  T     D+ +   T +  VP    
Sbjct: 159 SYLPLAHIFERVV-ENVCLYIGGRI-----GYYSGDTRGLKGDIKELKPTVFVGVPRVLD 212

Query: 261 TIHQIVLDRHVAKPEP-------VY-------------------------------PKLR 282
            I++ +L +  AK           Y                                ++R
Sbjct: 213 RIYKGILAKVNAKGGLKRTLFNFAYNYKLAALRRGHGYASPLWDKLVFKKIKAALGGRVR 272

Query: 283 FIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPVG- 341
            + S  A L+P     L  A G PVL+ Y +TE T    +   P D     G VG P+  
Sbjct: 273 LMLSGGAPLSPDTQEFLRVALGCPVLQGYGLTE-TCAGGTLSDPGD--TTTGHVGPPLPC 329

Query: 342 QEIAILDEIGVPQEGG-------AKGEVCIRGPNVTKGYKNNPEANKSAFLF-GWFHTGD 393
            EI ++D   VP E G        +GE+CIRGPNV KGY  NPE    AF   GWFHTGD
Sbjct: 330 CEIKLVD---VP-EMGYFAKDDPPRGEICIRGPNVFKGYYKNPEKTAEAFDEDGWFHTGD 385

Query: 394 IGYFDSDGYLHLVGRIKELI 413
           IG +  DG L ++ R K L 
Sbjct: 386 IGEWLPDGTLKIIDRKKNLF 405

The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539

>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed

 Score =  165 bits (421), Expect = 9e-46
 Identities = 120/406 (29%), Positives = 180/406 (44%), Gaps = 29/406 (7%)

Query: 30  DLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAY 89
             TY  +  LV+R A  L   G+  GDVV+   PN  EF +++LA  R  A   PL   +
Sbjct: 55  RFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLACSRIGAVLNPLMPIF 114

Query: 90  TPDEFEFYLSDSESKLLLTPAE---GNAAAQAAASKLNISHATATLL----DADS-ELTL 141
              E  F L  +ESK+L+ P      + AA A   +  +      ++     ADS E  L
Sbjct: 115 RERELSFMLKHAESKVLVVPKTFRGFDHAAMARRLRPELPALRHVVVVGGDGADSFEALL 174

Query: 142 SLAHSESDTNAISKLTN---DPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYK 198
                E + +A + L      P DV   ++TSGTT  PKGV  T N L A++        
Sbjct: 175 ITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERLG 234

Query: 199 LTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTL-----PAAGRFSASTFWQDMIKYNA 253
           L   D  ++  P+ H  G + GL+     GA   L     PA  R +      ++I+   
Sbjct: 235 LGADDVILMASPMAHQTGFMYGLMMPVMLGATAVLQDIWDPA--RAA------ELIRTEG 286

Query: 254 TWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAM 313
             +T   T     L R V +       LR      A +   ++ R   A GA ++ A+ M
Sbjct: 287 VTFTMASTPFLTDLTRAVKESGRPVSSLRTFLCAGAPIPGALVERARAALGAKIVSAWGM 346

Query: 314 TEATHLMSSNPLPEDGPHKPG-SVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTK 371
           TE  +   +    +D   +   + G P+ G E+ ++D  G P   G  G + +RG +   
Sbjct: 347 TE--NGAVTLTKLDDPDERASTTDGCPLPGVEVRVVDADGAPLPAGQIGRLQVRGCSNFG 404

Query: 372 GYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
           GY   P+ N +    GWF TGD+   D+DGY+ + GR K++I RGG
Sbjct: 405 GYLKRPQLNGTDAD-GWFDTGDLARIDADGYIRISGRSKDVIIRGG 449

Length = 547

>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA

 Score =  161 bits (408), Expect = 4e-44
 Identities = 135/438 (30%), Positives = 198/438 (45%), Gaps = 33/438 (7%)

Query: 5   TLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPN 64
           TL  LL++    +  + AL    +  +TY+ +  + E AA+ L+ AG      VAL   N
Sbjct: 22  TLPDLLSKAAADYGPRPALEFRDR-PITYTELEAMAETAAAALLRAGYGKDASVALYLGN 80

Query: 65  TVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLT-------PAEGNAAAQ 117
           T +  I F   ++A A    L+           LSDS ++LL+T       P       +
Sbjct: 81  TPDHPINFFGALKAGARVVHLSPLDGERALSHKLSDSGARLLITSDLAALLPMALKFLEK 140

Query: 118 AAASKLNI--------SHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHT 169
               +L +               + AD  +       +            P DVAL  +T
Sbjct: 141 GLLDRLIVCEDDNWGKVGTPQAPIPADPRIVTYADFVKGAAAPAEWPAVTPDDVALLQYT 200

Query: 170 SGTTSRPKGVPLTQNNLAASVSNIKSVYKLTES------DSTVIVLPLFHVHGMLAGLLS 223
            GTT  PKG  LT  NL ++VS I  V+           +  + VLPLFH++ +   LL 
Sbjct: 201 GGTTGLPKGAMLTHGNLTSAVS-IYDVWGKPSRATRGDVERVICVLPLFHIYALTVILLR 259

Query: 224 SFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRF 283
           S   G  ++L    RF  +  ++D+ +  AT +  VPT+  I L    +  +     L  
Sbjct: 260 SLRRGDLISLHQ--RFDVAAVFRDIEEKRATVFPGVPTM-WIALANDPSLEKRDLSSLAT 316

Query: 284 IRSCSASLAPVILSRL-EEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-G 341
           I S  A L PV ++   E   G  +   + MTE     + +P   +GP KPGS+G  + G
Sbjct: 317 IGSGGAPL-PVEVANFFERKTGLKLKSGWGMTETCSPGTGHPP--EGPDKPGSIGLMLPG 373

Query: 342 QEIAI--LDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDS 399
            E+ +  LD+       G  GE+ IRGPNVT+GY N PE +  AF+   F TGDIGY D+
Sbjct: 374 IELDVVSLDDPTKVLPPGEVGELRIRGPNVTRGYWNRPEESAEAFVGDRFLTGDIGYMDT 433

Query: 400 DGYLHLVGRIKELINRGG 417
           DGY  LV R K++I  GG
Sbjct: 434 DGYFFLVDRKKDMIISGG 451

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score =  158 bits (403), Expect = 6e-44
 Identities = 111/416 (26%), Positives = 163/416 (39%), Gaps = 88/416 (21%)

Query: 16  QFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAV 75
           +   + AL V G   LTY+ + E  +R A+RL+A G  AGD VA+    + +     LA 
Sbjct: 3   KHPDRPALVVGGD-TLTYAELKERADRLAARLLALGGRAGDPVAVYGHKSPDAYAAILAC 61

Query: 76  IRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDA 135
           ++A A   PL+ +   +     L  +    L+                            
Sbjct: 62  LKAGAAYVPLDPSQPAERIAKILEAAGPAALVA--------------------------- 94

Query: 136 DSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKS 195
                                  DP D+A  L TSG+T +PKGV ++  NLA+ +  +  
Sbjct: 95  -----------------------DPDDLAYILFTSGSTGKPKGVQISHANLASFLDWMVE 131

Query: 196 VYKLTESDSTVIVLPLFH----VHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIK- 250
            + LTE D        F     V  +   L    A+GA + +    + +      + +K 
Sbjct: 132 DFDLTEGD-VFSNQAPFSFDLSVFDLFPAL----ASGATLYVIPKEQIADPLALFEFLKE 186

Query: 251 YNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVLE 309
           +  T + +VP+   ++L      PE   P LR    C   L   +   L   F  A ++ 
Sbjct: 187 HGLTVWVSVPSFASLLLLSRELNPE-SLPSLRTFLFCGEVLPKKLAKALRRRFPNARIIN 245

Query: 310 AYAMTEAT-----------HLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGG 357
            Y  TEAT            L  + PLP         +G P  G    ILDE G P   G
Sbjct: 246 LYGPTEATVAVTAYEVTPEPLSRNEPLP---------IGYPKPGLRALILDEDGRPVPPG 296

Query: 358 AKGEVCIRGPNVTKGYKNNPEANKSAFLF----GWFHTGDIGYFDSDGYLHLVGRI 409
            +GE+ I GP V+ GY NNPE    AF       W+ TGD+ Y + DG L  +GR 
Sbjct: 297 EEGELVIAGPQVSPGYLNNPEKTAKAFFQDEGQRWYRTGDLVYLEDDGLLVYLGRK 352

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas)

 Score =  159 bits (404), Expect = 7e-44
 Identities = 117/407 (28%), Positives = 174/407 (42%), Gaps = 50/407 (12%)

Query: 45  SRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT--PDEFEFYLSDSE 102
           SRL+      G+ + +  P++V   +  LA++ A      LN  +T   +        + 
Sbjct: 21  SRLIKKLTKEGENIGIMLPSSVAGALANLALLLAGKVPVMLN--FTAGEEGLRSACKQAG 78

Query: 103 SKLLLTPAEGNAAAQAAASKLNISHATATLLDAD----SELTLSLAHSESDTNAISKL-- 156
            K ++T       ++A   KL +      L         +L   ++ ++     ++    
Sbjct: 79  IKTVIT-------SRAFLEKLKLEGLVVLLEGVRIVYLEDLRAKISKADKLKAFLAAKLP 131

Query: 157 ---------TNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVI 207
                       P D A+ L TSG+   PKGV L+  NL A++  I +V  L   D  + 
Sbjct: 132 PALLRLFLAGAKPDDPAVILFTSGSEGLPKGVVLSHRNLLANIDQIAAVIDLNTEDVLLG 191

Query: 208 VLPLFHVHGMLAGLLSSFAAGAAVTL---PAAGRFSASTFWQDMIKYNATWYTAVPTIHQ 264
            LPLFH  G+   LL     G  V     P   +  A      +  Y AT     PT  +
Sbjct: 192 ALPLFHAFGLTVTLLLPLLTGLRVVYYPNPLDAKKIAEL----IRDYKATILCGTPTFLR 247

Query: 265 IVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNP 324
                  A PE     LR + + +  L        EE FG  +LE Y  TE + ++S N 
Sbjct: 248 GYARN--AHPEDFS-SLRLVVAGAEKLPEATRELFEEKFGIRILEGYGATECSPVISVN- 303

Query: 325 LPEDGPHKPGSVGRPV-GQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKS 382
            P    +KPG+VGRP+ G E+ I+  E       G  G + +RGPNV  GY NN E  K+
Sbjct: 304 TPMG--NKPGTVGRPLPGIEVRIVSPETHEELPIGEGGLLLVRGPNVMSGYLNNEE--KT 359

Query: 383 AFLF----GWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISL 425
           + +     GW+ TGDIG  D DG+L +VGR+K     GG   E +SL
Sbjct: 360 SEVEVLGDGWYDTGDIGKIDEDGFLTIVGRLKRFAKIGG---EMVSL 403

Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489

>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional

 Score =  158 bits (400), Expect = 9e-43
 Identities = 123/447 (27%), Positives = 184/447 (41%), Gaps = 33/447 (7%)

Query: 1   MEGVTLIGLLNQVIDQFSSKRALSVSGK-FDLTYSRIHELVERAASRLVAAGINAGDVVA 59
           +   T+    +  + +F  + AL V  +    T+ ++ + V+R A  L+A G+  GD V 
Sbjct: 15  LLTQTIGDAFDATVARFPDREALVVRHQALRYTWRQLADAVDRLARGLLALGVQPGDRVG 74

Query: 60  LTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTP---------- 109
           +  PN  E+++   A  R  A    +N AY   E E+ L  S  + ++            
Sbjct: 75  IWAPNCAEWLLTQFATARIGAILVNINPAYRASELEYALGQSGVRWVICADAFKTSDYHA 134

Query: 110 ---------AEGNAAAQAAAS--KLN--ISHA---TATLLDADSELTLSLAHSESDTNAI 153
                    AEG   A A     +L   +S A       L            S       
Sbjct: 135 MLQELLPGLAEGQPGALACERLPELRGVVSLAPAPPPGFLAWHELQARGETVSREALAER 194

Query: 154 SKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFH 213
              + D  D     +TSGTT  PKG  L+ +N+  +   +     LTE D   + +PL+H
Sbjct: 195 QA-SLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESLGLTEHDRLCVPVPLYH 253

Query: 214 VHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAK 273
             GM+   L     GA +  P    F      Q + +   T    VPT+    LD H  +
Sbjct: 254 CFGMVLANLGCMTVGACLVYPNEA-FDPLATLQAVEEERCTALYGVPTMFIAELD-HPQR 311

Query: 274 PEPVYPKLRFIRSCSASLAPVILSR-LEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHK 332
                  LR      A     ++ R ++E   A V  AY MTE + +       +D   +
Sbjct: 312 GNFDLSSLRTGIMAGAPCPIEVMRRVMDEMHMAEVQIAYGMTETSPVSLQTTAADDLERR 371

Query: 333 PGSVGRPVG-QEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF-GWFH 390
             +VGR     E+ ++D  G     G  GE+C RG +V KGY NNPEA   +    GW H
Sbjct: 372 VETVGRTQPHLEVKVVDPDGATVPRGEIGELCTRGYSVMKGYWNNPEATAESIDEDGWMH 431

Query: 391 TGDIGYFDSDGYLHLVGRIKELINRGG 417
           TGD+   D  GY+ +VGR K++I RGG
Sbjct: 432 TGDLATMDEQGYVRIVGRSKDMIIRGG 458

Length = 558

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score =  153 bits (389), Expect = 4e-42
 Identities = 106/391 (27%), Positives = 165/391 (42%), Gaps = 57/391 (14%)

Query: 32  TYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTP 91
           T+ ++ +   R A+ L   G+  GD V +  P + E  I  LAV +  A + PL+  + P
Sbjct: 8   TFGQLKDASNRLANALRELGVERGDRVGVYLPQSPETAIAHLAVYKLGAVSVPLSVLFGP 67

Query: 92  DEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTN 151
           D  E  L DS +++L+T                                           
Sbjct: 68  DAVEHRLRDSGARVLVT------------------------------------------- 84

Query: 152 AISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPL 211
                 +   D A+ ++TSGTT  PKG       L   +  ++  ++L      V   P 
Sbjct: 85  ------DGSDDPAILIYTSGTTGPPKGALHGHRVLLGHLPGVELYFELAPRPGDVFWTPA 138

Query: 212 --FHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDR 269
               + G+L  LL +   G  V      RF     +  M +Y  T     PT  ++ + R
Sbjct: 139 DWAWIGGLLDVLLPALYFGVPVVAYRMQRFDPERAFALMRRYGVTNAFLPPTALKM-MRR 197

Query: 270 HVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDG 329
             ++      +LR + S   SL   +L    +  G  V E Y  TEA  ++ +      G
Sbjct: 198 VGSERARYDLRLRAVASGGESLGEELLEWARDELGLTVNEFYGQTEANLVVGNCAAL--G 255

Query: 330 PHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPN--VTKGYKNNPEANKSAFLF 386
           P +PGS+G+PV G E+A++D+ G P   G  GE+ ++ P+  +  GY NNPEA  + F  
Sbjct: 256 PARPGSMGKPVPGHEVAVVDDAGRPVPPGEVGEIAVKRPDPVMFLGYWNNPEATAAKFAG 315

Query: 387 GWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
            W  TGD+G  D+DGYL   GR  ++I   G
Sbjct: 316 DWLLTGDLGRRDADGYLWFKGRADDVIKSSG 346

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional

 Score =  154 bits (390), Expect = 1e-41
 Identities = 127/418 (30%), Positives = 179/418 (42%), Gaps = 30/418 (7%)

Query: 21  RALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARA 80
           R L V G    TY+        AA  L AAG+  GD VAL   N +EF+ +FL      A
Sbjct: 37  RPLLVFGGTRWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFLGCAWLGA 96

Query: 81  TAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELT 140
            A P+N A    + E  L +S ++LL+  A    AA  AA   ++      LLDA + ++
Sbjct: 97  IAVPINTALRGPQLEHILRNSGARLLVVEAAL-LAALEAADPGDLPLPAVWLLDAPASVS 155

Query: 141 LSLAHSESD----TNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSV 196
           +    S +               P D A  L+TSGTT   KGV            N    
Sbjct: 156 VPAGWSTAPLPPLDAPAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAED 215

Query: 197 YKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWY 256
            ++   D     LPLFH +  L     +  AGA   L    RFSAS FW  + ++ AT  
Sbjct: 216 LEIGADDVLYTTLPLFHTNA-LNAFFQALLAGATYVLEP--RFSASGFWPAVRRHGATVT 272

Query: 257 TAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF----GAPVLEAYA 312
             +  +  I+L    ++P     +   +R    +L P + + L  AF    G  +L+ Y 
Sbjct: 273 YLLGAMVSILL----SQPARESDRAHRVR---VALGPGVPAALHAAFRERFGVDLLDGYG 325

Query: 313 MTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPN--- 368
            TE   +++          +PGS+GR   G E  ++DE       G  GE+ +R      
Sbjct: 326 STETNFVIAV-THGSQ---RPGSMGRLAPGFEARVVDEHDQELPDGEPGELLLRADEPFA 381

Query: 369 VTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLF 426
              GY   PE    A+   WFHTGD    D+DG+   V RIK+ I R G   E+IS F
Sbjct: 382 FATGYFGMPEKTVEAWRNLWFHTGDRVVRDADGWFRFVDRIKDAIRRRG---ENISSF 436

Length = 542

>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase

 Score =  153 bits (389), Expect = 2e-41
 Identities = 113/406 (27%), Positives = 178/406 (43%), Gaps = 31/406 (7%)

Query: 31  LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
            +Y  +   V+R A  L   G+  GDVV+   PN  EF  ++LA  R  A   PL   + 
Sbjct: 54  FSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACARIGAVLNPLMPIFR 113

Query: 91  PDEFEFYLSDSESKLLLTPA---EGNAAAQAAASKLNISH-ATATLLDADS----ELTLS 142
             E  F L+ ++SK+ + P+     + AA A   +  +       ++D D     +  L 
Sbjct: 114 ERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDGDGDDSFDRVLM 173

Query: 143 LAHSESDTNAISKLTND---PSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKL 199
               +   +A + L      P DV   ++TSGTT  PKGV  T N L +++       +L
Sbjct: 174 TPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERLEL 233

Query: 200 TESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQ-----DMIKYNAT 254
              D  ++  P+ H  G + GL+      A   L           W      ++I+    
Sbjct: 234 GGGDVILMASPMAHQTGFMYGLMMPLILNATAVL--------QDIWNPARAAELIRETGV 285

Query: 255 WYTAVPTIHQIVLDRHVAKP-EPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAM 313
            +T   T     L R V +   PV P L       A +  +++ R  E  GA ++ A+ M
Sbjct: 286 TFTMASTPFLTDLCRAVKESGAPV-PSLFTFLCAGAPIPGILVERAWELLGALIVSAWGM 344

Query: 314 TEATHLMSSNPLPEDGPHKPG-SVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTK 371
           TE   +  +   P+D   K   + GRP+ G E+ ++D  G     G  G + +RG +   
Sbjct: 345 TENGAVTVT--EPDDALEKASTTDGRPLPGVEVKVIDANGAKLSQGETGRLLVRGCSNFG 402

Query: 372 GYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
           GY   P  N S    GWF TGD+ + D++GY+ + GR K++I RGG
Sbjct: 403 GYLKRPHLN-STDAEGWFDTGDLAFQDAEGYIRINGRSKDVIIRGG 447

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538

>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional

 Score =  152 bits (387), Expect = 2e-41
 Identities = 117/428 (27%), Positives = 176/428 (41%), Gaps = 59/428 (13%)

Query: 25  VSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAP 84
           +SG    ++  + +   RAA  L A G+  GD VAL   N   F     A +R  A A P
Sbjct: 6   ISGDRRRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVP 65

Query: 85  LNAAYTPDEFEFYLSDSESKLLL-----------------------TPAEGNAAAQAAAS 121
           +N  + P+E  + L DS +++L+                       TP E      AAA 
Sbjct: 66  VNWHFKPEEIAYILEDSGARVLIAHADLLHGLASALPAGVTVLSVPTPPE-----IAAAY 120

Query: 122 KLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGV-- 179
           +++ +  T      D E  L+      D   + +  +        ++TSGTT  PKGV  
Sbjct: 121 RISPALLTPPAGAIDWEGWLA-QQEPYDGPPVPQPQS-------MIYTSGTTGHPKGVRR 172

Query: 180 -PLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGR 238
              T    AA+      +Y L      ++  PL+H      GL +    G  V  P   R
Sbjct: 173 AAPTPEQAAAAEQMRALIYGLKPGIRALLTGPLYHSAPNAYGLRAGRLGGVLVLQP---R 229

Query: 239 FSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPK-----LRFIRSCSASLAP 293
           F      Q + ++  T    VPT+   +L      PE V  K     LR +   +A    
Sbjct: 230 FDPEELLQLIERHRITHMHMVPTMFIRLLKL----PEEVRAKYDVSSLRHVIHAAAPCPA 285

Query: 294 VILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGV 352
            +   + E +G  + E Y  TE+  +  +    ED    PG+VG+   G E+  +DE G 
Sbjct: 286 DVKRAMIEWWGPVIYEYYGSTESGAVTFAT--SEDALSHPGTVGKAAPGAELRFVDEDGR 343

Query: 353 PQEGGAKGEVCIR---GPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRI 409
           P   G  GE+  R    P+ T  Y N PE        G+  +GD+GY D+DGYL L  R 
Sbjct: 344 PLPQGEIGEIYSRIAGNPDFT--YHNKPEKRAEIDRGGFITSGDVGYLDADGYLFLCDRK 401

Query: 410 KELINRGG 417
           ++++  GG
Sbjct: 402 RDMVISGG 409

Length = 509

>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  153 bits (388), Expect = 3e-41
 Identities = 118/429 (27%), Positives = 186/429 (43%), Gaps = 25/429 (5%)

Query: 3   GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTF 62
             TL  +L     ++  + A+ + G+  L+Y+ + +  +R A+ L   GI  GD V +  
Sbjct: 27  DRTLTDILTDHAARYPDRIAV-IDGERRLSYAELDQRADRLAAGLRRLGIKPGDTVLVQL 85

Query: 63  PNTVEFVIMFLAVIRARATAAPLNA--AYTPDEFEFYLSDSESKLLLTP-AEGNAAAQAA 119
           PN  EF I F A++  R   AP+ A  ++   E   + S  E+ LL+          +  
Sbjct: 86  PNVAEFYITFFALL--RLGVAPVLALPSHRASELGAFASQIEAALLIVARQHSGFDYRPF 143

Query: 120 ASKLNISHATATLL----DADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSR 175
           A +L   H T   +    +A+    L  A              D  +VA F  + GTT  
Sbjct: 144 ARELVAKHPTLRHVIVAGEAEHPSVLEAALCHPAGLFTPAPPADAGEVAFFQLSGGTTGT 203

Query: 176 PKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLA-GLLSSFAAGAAVTLP 234
           PK +P T N+   SV     +    +    +  LP  H   + + G L  F AG  V L 
Sbjct: 204 PKLIPRTHNDYYYSVRASAEICGFDQQTVYLCALPAAHNFPLSSPGALGVFLAGGTVVL- 262

Query: 235 AAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPK-LRFIRSCSASLAP 293
            A   S    +  + ++  T    VP +  + L    A+ E      LR ++   A L+ 
Sbjct: 263 -APDPSPELCFPLIERHGVTVTALVPPLASLWLQ--AAEWERADLSSLRLLQVGGARLSA 319

Query: 294 VILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKP--GSVGRPVG--QEIAILDE 349
            +  R+    G  + + + M E   L++   L  D P +    + GRP+    E+ ++D 
Sbjct: 320 TLARRVPAVLGCQLQQVFGMAEG--LVNYTRL--DDPPEIIIHTQGRPLSPDDEVRVVDA 375

Query: 350 IGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF-GWFHTGDIGYFDSDGYLHLVGR 408
            G P   G  GE+  RGP   +GY   PE N  AF   G++ +GD+   D DGYL + GR
Sbjct: 376 DGNPVAPGEVGELLTRGPYTIRGYYRAPEHNARAFDADGFYRSGDLVRRDPDGYLVVEGR 435

Query: 409 IKELINRGG 417
           +K+ INRGG
Sbjct: 436 VKDQINRGG 444

Length = 542

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score =  150 bits (382), Expect = 3e-41
 Identities = 95/391 (24%), Positives = 155/391 (39%), Gaps = 60/391 (15%)

Query: 32  TYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTP 91
           T++ + E  +RAA+ L   G+  GD VA+  P   E   + L  I+  A   P      P
Sbjct: 2   TFAELKEESDRAANFLKDLGVGRGDRVAVLLPRVPELWAVILGCIKLGAVFIPGTTQLGP 61

Query: 92  DEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTN 151
            +  + L  + ++ ++T                                           
Sbjct: 62  KDIRYRLERAGARAIVT------------------------------------------- 78

Query: 152 AISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPL 211
                     D AL   TSGTT  PK V  T +     +        L   D    +   
Sbjct: 79  -------SADDPALLYFTSGTTGLPKMVLHTHSYPLGHLVTGAYWLDLRPDDLHWTIADP 131

Query: 212 FHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHV 271
               G  + L + +  GAAV +    RF A    + + +Y  T + A PT ++++L + +
Sbjct: 132 GWAKGAWSSLFAPWLLGAAVFVYHGRRFDAERTLELLERYGVTTFCAPPTAYRMLLQQDL 191

Query: 272 AKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPH 331
           +  +  +  LR + S    L P ++     A G P+ + Y  TE   L+++ P       
Sbjct: 192 SSYD--FSHLRHVVSAGEPLNPEVIDWWRAATGLPIRDGYGQTETGLLVANFP---GMEV 246

Query: 332 KPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCI----RGPNVTKGYKNNPEANKSAFLF 386
           KPGS+GRP  G  +AI+D+ G     G +G++ +    R P + +GY  +PE  ++    
Sbjct: 247 KPGSMGRPAPGYRVAIIDDEGNELPPGEEGDIAVRVKPRPPGLFRGYLKDPEKTEATIRG 306

Query: 387 GWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
            W+ TGD    D DGY   VGR  ++I   G
Sbjct: 307 DWYLTGDRAIKDEDGYFWFVGRADDVIKSSG 337

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated

 Score =  151 bits (383), Expect = 9e-41
 Identities = 111/405 (27%), Positives = 166/405 (40%), Gaps = 35/405 (8%)

Query: 31  LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
           +TY  +     R A  L A G+  GDVVA+   N  EF  ++ A  R+     P+N   T
Sbjct: 12  VTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLT 71

Query: 91  PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAH---SE 147
             E  + + DS +K+L+  A     A   A++L        ++        S      ++
Sbjct: 72  AAEIAYIVDDSGAKVLIVSAALADTAAELAAELPAGVPLLLVVAGPVPGFRSYEEALAAQ 131

Query: 148 SDTNAISKLTNDPSDV---ALFLHTSGTTSRPKGV--PLTQNNL--AASVSNIKSVYKLT 200
            DT          +D    A  L++SGTT RPKG+  PL   +   A  +      + + 
Sbjct: 132 PDT--------PIADETAGADMLYSSGTTGRPKGIKRPLPGLDPDEAPGMMLALLGFGMY 183

Query: 201 ESDSTVIVL--PLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTA 258
               +V +   PL+H   +  G+ +    G  V +    +F A      + +Y  T    
Sbjct: 184 GGPDSVYLSPAPLYHTAPLRFGMSALALGGTVVVME---KFDAEEALALIERYRVTHSQL 240

Query: 259 VPTIHQIVLDRHVAKPEPVYPK-----LRFIRSCSASLAPVILSRLEEAFGAPVLEAYAM 313
           VPT    V  R +  PE V  +     LR     +A     +   + + +G  + E YA 
Sbjct: 241 VPT--MFV--RMLKLPEEVRARYDVSSLRVAIHAAAPCPVEVKRAMIDWWGPIIHEYYAS 296

Query: 314 TEATHLMSSNPLPEDGPHKPGSVGRPVGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGY 373
           +E   +       ED    PGSVG+ V  E+ ILDE G     G  G V          Y
Sbjct: 297 SEGGGVTVIT--SEDWLAHPGSVGKAVLGEVRILDEDGNELPPGEIGTVYFEMDGYPFEY 354

Query: 374 KNNPEANKSAFL-FGWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
            N+PE   +A    GW   GD+GY D DGYL+L  R  ++I  GG
Sbjct: 355 HNDPEKTAAARNPHGWVTVGDVGYLDEDGYLYLTDRKSDMIISGG 399

Length = 502

>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated

 Score =  151 bits (383), Expect = 1e-40
 Identities = 117/442 (26%), Positives = 178/442 (40%), Gaps = 51/442 (11%)

Query: 9   LLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEF 68
           LL     +     AL    +  LTY+ + E V   AS L   G+  G+ VA+     +E 
Sbjct: 5   LLEDAAARLPDATALVHHDR-TLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLET 63

Query: 69  VIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQ-AAASKLNISH 127
           V        A     P+N     ++    L+D   +LL+T +E       A     ++  
Sbjct: 64  VTAMFGAALAGGVFVPINPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALPGCHDLRT 123

Query: 128 ------ATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPL 181
                           E   S     +  +A        SD+A  L+TSG+T RPKGV L
Sbjct: 124 LIIVGDPAHASEGHPGEEPASWPKLLALGDADPPHPVIDSDMAAILYTSGSTGRPKGVVL 183

Query: 182 TQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTL-----PAA 236
           +  NL A   ++ +  +    D  + VLPL   +G    L ++F  GA V L     P  
Sbjct: 184 SHRNLVAGAQSVATYLENRPDDRLLAVLPLSFDYG-FNQLTTAFYVGATVVLHDYLLP-- 240

Query: 237 GRFSASTFWQDMI----KYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLA 292
                    +D++    K+  T   AVP +    L + +  PE   P LR++ +   ++ 
Sbjct: 241 ---------RDVLKALEKHGITGLAAVPPL-WAQLAQ-LDWPESAAPSLRYLTNSGGAMP 289

Query: 293 PVILSRLEEAFG-APVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEI 350
              LSRL      A +   Y +TEA    S+   PE+   +P S+G+ +   E+ +L E 
Sbjct: 290 RATLSRLRSFLPNARLFLMYGLTEA--FRSTYLPPEEVDRRPDSIGKAIPNAEVLVLRED 347

Query: 351 GVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAF--------------LFGWFHTGDIGY 396
           G     G +GE+  RG  V  GY N+PE     F              L  W  +GD   
Sbjct: 348 GSECAPGEEGELVHRGALVAMGYWNDPEKTAERFRPLPPFPGELHLPELAVW--SGDTVR 405

Query: 397 FDSDGYLHLVGRIKELINRGGN 418
            D +G+L+ VGR  E+I   G 
Sbjct: 406 RDEEGFLYFVGRRDEMIKTSGY 427

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score =  150 bits (381), Expect = 3e-40
 Identities = 122/430 (28%), Positives = 181/430 (42%), Gaps = 30/430 (6%)

Query: 2   EGVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALT 61
            G T   LL   + ++  + AL V G   LTY ++ + + R      A G+  GD VAL 
Sbjct: 10  SGATYGHLLVSALKRYPDRPAL-VLGDTRLTYGQLADRISRYIQAFEALGLGTGDAVALL 68

Query: 62  FPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPA----EGNAAAQ 117
             N  E ++   A   A      L+   + D+  + L D+    L+       E   A  
Sbjct: 69  SLNRPEVLMAIGAAQLAGLRRTALHPLGSLDDHAYVLEDAGISTLIVDPAPFVERALALL 128

Query: 118 AAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLT--NDPSDVALFLHTSGTTSR 175
           A    L        L        + L  + +     + L     P D+A   +T GTT +
Sbjct: 129 ARVPSL-----KHVLTLGPVPDGVDLL-AAAAKFGPAPLVAAALPPDIAGLAYTGGTTGK 182

Query: 176 PKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPA 235
           PKGV  T  ++A       + ++       ++  PL H  G     L +   G  V + A
Sbjct: 183 PKGVMGTHRSIATMAQIQLAEWEWPADPRFLMCTPLSHAGGAF--FLPTLLRGGTVIVLA 240

Query: 236 AGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVI 295
              F  +   + + +   T    VPT+   +LD H          L  +   ++ ++PV 
Sbjct: 241 K--FDPAEVLRAIEEQRITATFLVPTMIYALLD-HPDLRTRDLSSLETVYYGASPMSPV- 296

Query: 296 LSRLEEA---FGAPVLEAYAMTEA----THLMSSNPLPEDGPHKPGSVGRPV-GQEIAIL 347
             RL EA   FG    + Y  TEA    T+L   +  P+D P +  S GRP  G  +A+L
Sbjct: 297 --RLAEAIERFGPIFAQYYGQTEAPMVITYLRKRDHDPDD-PKRLTSCGRPTPGLRVALL 353

Query: 348 DEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVG 407
           DE G     G  GE+C+RGP V  GY N PE    AF  GW HTGD+   D DG+ ++V 
Sbjct: 354 DEDGREVAQGEVGEICVRGPLVMDGYWNRPEETAEAFRDGWLHTGDVAREDEDGFYYIVD 413

Query: 408 RIKELINRGG 417
           R K++I  GG
Sbjct: 414 RKKDMIVTGG 423

Length = 524

>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase

 Score =  149 bits (379), Expect = 4e-40
 Identities = 101/402 (25%), Positives = 167/402 (41%), Gaps = 16/402 (3%)

Query: 25  VSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAP 84
           + G    +Y  + +  +  A+ L   GI  GD   +  PN  EF I+F A+++     AP
Sbjct: 43  ICGNRQWSYRELDQRADNLAAGLTKLGIKQGDTAVVQLPNIAEFYIVFFALLKL--GVAP 100

Query: 85  LNA--AYTPDEFEFYLSDSESKLLLTPAEGNA-AAQAAASKLNISHAT-ATLLDADSELT 140
           + A  ++   E   Y S  E  L +     +       A +L     T   ++ A     
Sbjct: 101 VLALFSHRKSELTAYASQIEPALYIIDRAHSLFDYDDFARQLQSKLPTLRNIIVAGQTGE 160

Query: 141 LSLAHSESDTNAISKLTN-DPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKL 199
             L           K       +VA F  + G+T  PK +P T N+   SV     +  L
Sbjct: 161 AELFLWLESPAEPVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICWL 220

Query: 200 TESDSTVIVLPLFHVHGMLA-GLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTA 258
           T+    +  LP  H + + + G L  F AG  V L      S +  +  + ++  T    
Sbjct: 221 TQQTRYLCALPAAHNYPLSSPGALGVFYAGGCVVLAPDP--SPTDCFPLIERHKVTVTAL 278

Query: 259 VPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATH 318
           VP    + +    +K       L+ ++   A  +     R+   FG  + + + M E   
Sbjct: 279 VPPAVALWMQ-AASKSRADLSSLKLLQVGGAKFSAAAARRVPAVFGCQLQQVFGMAEG-- 335

Query: 319 LMSSNPLPEDGPHKPGSVGRPVG--QEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNN 376
           L++   L +       + GRP+    E+ ++D+ G P   G  G +  RGP   +GY   
Sbjct: 336 LVNYTRLDDPAEIIFTTQGRPMSPDDEVRVVDDHGNPVAPGETGMLLTRGPYTFRGYYKA 395

Query: 377 PEANKSAF-LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
           PE N +AF   G+++TGD+     +GY+ +VGR K+ INRGG
Sbjct: 396 PEHNAAAFDAEGFYYTGDLVRLTPEGYIVVVGRAKDQINRGG 437

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526

>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score =  147 bits (373), Expect = 9e-40
 Identities = 100/393 (25%), Positives = 155/393 (39%), Gaps = 52/393 (13%)

Query: 31  LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
           L+Y+ + E   R A+ L   G+  GD VA   P T E V+  LA  R  A   PL  A+ 
Sbjct: 1   LSYAELREQSARVANLLADLGVKPGDRVAGLLPRTPELVVAILATWRVGAIYVPLFTAFG 60

Query: 91  PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDT 150
           P   E+ L  S +K+++T    NAA +                                 
Sbjct: 61  PKAIEYRLGHSGAKVVVT----NAANRG-------------------------------- 84

Query: 151 NAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLP 210
               KL +D       ++TSGTT  PKGVP+  N LAA  + ++    L + D    +  
Sbjct: 85  ----KLDDDL---FAQMYTSGTTGLPKGVPVPLNALAAFYAYMRYAIDLRDDDVFWNIAD 137

Query: 211 LFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRH 270
               +G+   +    A G        G F+A   +  + +   T +   PT +++++   
Sbjct: 138 PGWAYGLYYAITGPLAMGITTVFLEGG-FTAENTYDVLERLGVTNFAGSPTAYRMLMAAG 196

Query: 271 VAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDG- 329
                 +  KLR   S    L P ++   +   G  + + Y  TE    M          
Sbjct: 197 ADAAARIKLKLRVASSAGEPLNPEVVRWFQANLGVTIHDHYGQTE--TGMPVGNHHALAH 254

Query: 330 PHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIR----GPNVTKGYKNNPEANKSAF 384
             + GS+G P+ G  IA+LD+ G P   G  G++ I           GY ++PE      
Sbjct: 255 EVRAGSMGLPLPGYRIAVLDDDGQPLADGEPGQLAIDVASSPLLWFSGYWDDPEKTAELI 314

Query: 385 LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
              W+ TGD+   D DGY   +GR  ++I   G
Sbjct: 315 AGRWYVTGDLVERDEDGYFWFIGRADDVIISAG 347

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score =  149 bits (377), Expect = 1e-39
 Identities = 125/420 (29%), Positives = 187/420 (44%), Gaps = 45/420 (10%)

Query: 30  DLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAY 89
            +TY+ + EL +R A+ L   G+ AGD VA+  PN  +F I+F  +++  A   P++  +
Sbjct: 58  VITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAVHVPVSPLF 117

Query: 90  TPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATAT----LLDADSELTLS--- 142
              E  + L+D+ +++LL   +     +   ++ ++ H   T    +L A+  L L    
Sbjct: 118 REHELSYELNDAGAEVLLALDQLAPVVEQVRAETSLRHVIVTSLADVLPAEPTLPLPDSL 177

Query: 143 -------------LAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNL--- 186
                        L    + T  +         +A   +T GTT  PKG   TQ ++   
Sbjct: 178 RAPRLAAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYT 237

Query: 187 AASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQ 246
           AA+   +  V    E    +  LP F + G   GLL    +GA + L A  R+ A  F  
Sbjct: 238 AAAAYAVAVV--GGEDSVFLSFLPEFWIAGENFGLLFPLFSGATLVLLA--RWDAVAFMA 293

Query: 247 DMIKYNATWYTAVPTIHQIV-LDRHVAKPEPVYPKLRFIRSCS--ASLAPVILSRLEEAF 303
            + +Y  T    V  +   V L  H    E     LR +R  S    L P    R     
Sbjct: 294 AVERYRVT--RTVMLVDNAVELMDHPRFAEYDLSSLRQVRVVSFVKKLNPDYRQRWRALT 351

Query: 304 GAPVLEA-YAMTEATHLMSSNPLP---EDGPH----KPGSVGRPV-GQEIAILD-EIGVP 353
           G+ + EA + MTE TH  + +      +D       +P  VG PV G E  I D E G  
Sbjct: 352 GSVLAEAAWGMTE-TH--TCDTFTAGFQDDDFDLLSQPVFVGLPVPGTEFKICDFETGEL 408

Query: 354 QEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELI 413
              GA+GE+ +R P++ KGY N PEA   A   GW HTGDIG  D  G+LH +GR KE++
Sbjct: 409 LPLGAEGEIVVRTPSLLKGYWNKPEATAEALRDGWLHTGDIGKIDEQGFLHYLGRRKEML 468

Length = 567

>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated

 Score =  145 bits (367), Expect = 1e-38
 Identities = 107/390 (27%), Positives = 173/390 (44%), Gaps = 26/390 (6%)

Query: 32  TYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTP 91
           TY+ +  LV R A+ L   G   G+ +A+   N+V  V +  A  R  A   PLN   + 
Sbjct: 24  TYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVPLNWRLSA 83

Query: 92  DEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTN 151
            E +  L D+E +LLL    G+ A  A             + D  + +  + A   +DT 
Sbjct: 84  SELDALLQDAEPRLLL----GDDAVAAG---------RTDVEDLAAFIASADALEPADTP 130

Query: 152 AISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPL 211
           +I      P  V+L L TSGT+ +PKGV L++ NL  +  N   + ++    S +   P+
Sbjct: 131 SI-----PPERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLGRVDAHSSFLCDAPM 185

Query: 212 FHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHV 271
           FH+ G++  +    A G ++ +        +           T Y  VP + Q    +  
Sbjct: 186 FHIIGLITSVRPVLAVGGSILVSNGFEPKRTLGRLGDPALGITHYFCVPQMAQAFRAQPG 245

Query: 272 AKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHL--MSSNPLPEDG 329
                +          +   A  IL  L++  G P+++ + M+EA  +  MS +      
Sbjct: 246 FDAAALRHLTALFTGGAPHAAEDILGWLDD--GIPMVDGFGMSEAGTVFGMSVDCDVIRA 303

Query: 330 PHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF-G 387
             K G+ G P    +  ++D+ G     G  GE+ +RGPN++ GY   P+A   AF   G
Sbjct: 304 --KAGAAGIPTPTVQTRVVDDQGNDCPAGVPGELLLRGPNLSPGYWRRPQATARAFTGDG 361

Query: 388 WFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
           WF TGDI   D+DG+  +V R K++   GG
Sbjct: 362 WFRTGDIARRDADGFFWVVDRKKDMFISGG 391

Length = 488

>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS)

 Score =  143 bits (363), Expect = 2e-38
 Identities = 111/399 (27%), Positives = 169/399 (42%), Gaps = 57/399 (14%)

Query: 31  LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
            +Y  + EL  R A+ L + G+  G+ V    P + E  +  L  ++  A   PL +A+ 
Sbjct: 1   YSYQELKELSARFANVLASLGVGKGERVFTLLPRSPELYVAALGTLKLGAVYGPLFSAFG 60

Query: 91  PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDT 150
           P+     L   E+K+L+T                    T  L                  
Sbjct: 61  PEPIRDRLELGEAKVLIT--------------------TPELY----------------- 83

Query: 151 NAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLP 210
                   DP D AL   TSGTT +PKGV      + A  +  + V  L   D       
Sbjct: 84  -----ERTDPEDPALLHFTSGTTGKPKGVLHVHRAVVAHYATARYVLDLRPDDVYWCTAD 138

Query: 211 LFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNAT-WYTAVPTIHQIVLDR 269
              V G   G+++    G  + +   G F A  ++  + +   T WYTA PT  ++ L R
Sbjct: 139 PGWVTGTSYGIIAPLLNGVTLVV-DEGEFDAERWYGILEEEKVTVWYTA-PTALRM-LMR 195

Query: 270 HVAKPEPVY--PKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPE 327
              +    Y    LR I S    L P ++   E+  G P+ + +  TE   +M +N  P 
Sbjct: 196 AGPELAARYDLSSLRHIASVGEPLNPEVVVWGEKVLGMPIHDTWWQTETGAIMIAN-YP- 253

Query: 328 DGPHKPGSVGRPV-GQEIAIL----DEIGVPQEGGAKGEVCIRG--PNVTKGYKNNPEAN 380
             P KPGS+GRP+ G E A++    D +      G  GE+ ++   P++ +GY  N E  
Sbjct: 254 GIPVKPGSMGRPLPGIEAAVIERDGDGLTPVTGPGQVGELALKPGWPSMFRGYLGNEERY 313

Query: 381 KSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNL 419
            S+F+ GW+ TGD+ Y D DGY   VGR  ++I   G+L
Sbjct: 314 ASSFVDGWYLTGDLAYRDEDGYFWFVGRADDVIKTAGHL 352

This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443

>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)

 Score =  142 bits (361), Expect = 5e-38
 Identities = 105/395 (26%), Positives = 155/395 (39%), Gaps = 74/395 (18%)

Query: 31  LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
           LTY  ++E   R A  L A G+  GD+VA+    + E V+  LAV++A A   PL+ AY 
Sbjct: 13  LTYRELNERANRLAHYLRARGVGPGDLVAICLERSPEMVVAILAVLKAGAAYVPLDPAYP 72

Query: 91  PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDT 150
            +   + L DS +KLLLT                                          
Sbjct: 73  AERLAYMLEDSGAKLLLT------------------------------------------ 90

Query: 151 NAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLP 210
                   DP D+A  ++TSG+T RPKGV +    L   ++ ++  Y LT  D  +    
Sbjct: 91  --------DPDDLAYVIYTSGSTGRPKGVMVEHRGLVNLLAWLQERYGLTAGDRVLQFAS 142

Query: 211 L---FHVHGMLAGLLSSFAAGAA-VTLPAAGRFSASTFWQDMIKYNATWYTAVPT-IHQI 265
                 V  +   LLS    GA  V  P           + + ++  T    VP+ +  +
Sbjct: 143 FSFDASVWEIFPPLLS----GATLVLAPPEVLRDPEALAELLREHRITVLHLVPSLLRAL 198

Query: 266 VLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRL-EEAFGAPVLEAYAMTEAT-HLMSSN 323
           +     A      P LR +     +L   ++ R  E   GA ++ AY  TE T  +    
Sbjct: 199 LDALEPAAL----PSLRLVIVGGEALPAELVRRWRELFPGARLVNAYGPTETTVDVTYHE 254

Query: 324 PLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKS 382
             P+D       +GRP+    + +LDE   P   G  GE+ I G  V +GY N PE    
Sbjct: 255 VDPDDLDGGSVPIGRPIANTRVYVLDEDLRPVPVGVPGELYIGGAGVARGYLNRPELTAE 314

Query: 383 AFLFGWFH--------TGDIGYFDSDGYLHLVGRI 409
            F+   F         TGD+  +  DG L  +GR 
Sbjct: 315 RFVPDPFGGPGERLYRTGDLARWLPDGNLEFLGRA 349

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445

>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated

 Score =  144 bits (365), Expect = 6e-38
 Identities = 123/449 (27%), Positives = 191/449 (42%), Gaps = 51/449 (11%)

Query: 5   TLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPN 64
           +L  LL +   Q++ + A    GK  +TY  + EL    A+ L + G+  G  VA+  PN
Sbjct: 24  SLADLLEESFRQYADRPAFICMGK-AITYGELDELSRALAAWLQSRGLAKGARVAIMMPN 82

Query: 65  TVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLN 124
            +++ +   AV+RA      +N  YTP E E  L DS ++ ++         Q   +K  
Sbjct: 83  VLQYPVAIAAVLRAGYVVVNVNPLYTPRELEHQLKDSGAEAIVVLENFATTVQQVLAKTA 142

Query: 125 ISHATAT----LLDADSEL-------------TLSLAHSESDTNAIS--------KLTND 159
           + H        LL     +               SL       +A++         +   
Sbjct: 143 VKHVVVASMGDLLGFKGHIVNFVVRRVKKMVPAWSLPGHVRFNDALAEGARQTFKPVKLG 202

Query: 160 PSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIK-------SVYKLTESDSTVIVLPLF 212
           P DVA   +T GTT   KG  L   N+ A+V  ++             +  + V  LPL+
Sbjct: 203 PDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKPRPDQLNFVCALPLY 262

Query: 213 HVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVA 272
           H+  +    L     G    L    R     F +++ KY    + AV T++  +L+    
Sbjct: 263 HIFALTVCGLLGMRTGGRNILIPNPRDIPG-FIKELKKYQVHIFPAVNTLYNALLN---- 317

Query: 273 KPEPVYPKLRF---IRSCSASLA---PVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLP 326
              P + KL F   I +    +A   PV   R  E  G P+ E Y ++E + + + NP+ 
Sbjct: 318 --NPDFDKLDFSKLIVANGGGMAVQRPVA-ERWLEMTGCPITEGYGLSETSPVATCNPV- 373

Query: 327 EDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNP-EANKSAF 384
            D     G++G P+   E++I D+ G     G  GE+CIRGP V  GY N P E  K   
Sbjct: 374 -DATEFSGTIGLPLPSTEVSIRDDDGNDLPLGEPGEICIRGPQVMAGYWNRPDETAKVMT 432

Query: 385 LFGWFHTGDIGYFDSDGYLHLVGRIKELI 413
             G+F TGD+G  D  GY  +V R K++I
Sbjct: 433 ADGFFRTGDVGVMDERGYTKIVDRKKDMI 461

Length = 557

>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes

 Score =  141 bits (359), Expect = 1e-37
 Identities = 99/401 (24%), Positives = 160/401 (39%), Gaps = 86/401 (21%)

Query: 31  LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
           L+Y+  +    R A  L A G+  GDVVAL   N  E+++ +LA+ +  A AA +N    
Sbjct: 4   LSYAEFNAWANRYAHALRALGVKKGDVVALLMENRPEYLLAWLALAKLGAVAALINTTQR 63

Query: 91  PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDT 150
            +     ++ S+++ ++                                           
Sbjct: 64  GEVLAHCINVSDARAVIV------------------------------------------ 81

Query: 151 NAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLP 210
                      D A +++TSGTT  PK   ++      + +    +  L   D   + LP
Sbjct: 82  -----------DPAFYIYTSGTTGLPKAAIMSHRRWLRAGAVFGGLGLLKPDDVLYLCLP 130

Query: 211 LFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRH 270
           L+H + +  G  S+ AAGA++ L    +FSAS FW D+ +Y AT +  V  + + +L++ 
Sbjct: 131 LYHSNALTVGWSSALAAGASLAL--RRKFSASQFWPDVRRYGATAFQYVGELCRYLLNQ- 187

Query: 271 VAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAP-VLEAYAMTEATHLMSSNPLPEDG 329
             KP+     LR I      L P I    +E FG P ++E Y  TE   +   N      
Sbjct: 188 PEKPDDRDHPLRKI--IGNGLRPDIWDEFKERFGVPRIVEFYGSTEGN-VGFINL----- 239

Query: 330 PHKPGSVGRPVGQEIAIL------DEIGVPQEG-------GAKGEVC--IRGPNVTKGYK 374
            +KPG+VGR     IA++      +E      G       G  G +   I   N   GY 
Sbjct: 240 FNKPGAVGRLPPAAIAVVKYDVETEEPIRDANGFCIKVPPGEVGLLLGEITDRNPFDGYT 299

Query: 375 NNPEANKSAFLF------GWFHTGDIGYFDSDGYLHLVGRI 409
           ++    K            +F+TGD+   D  GY + V R+
Sbjct: 300 DDEATEKKILRDVFKKGDAYFNTGDLVRRDGFGYFYFVDRL 340

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score =  143 bits (362), Expect = 2e-37
 Identities = 132/452 (29%), Positives = 192/452 (42%), Gaps = 46/452 (10%)

Query: 3   GVTLIGLLNQVIDQFSSKRAL-SVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALT 61
             T+  LL++   ++  + AL         TY   +E V+  A  L+A GI  GD V + 
Sbjct: 15  EQTIGQLLDRTAARYPDREALVYRDQGLRWTYREFNEEVDALAKGLLALGIEKGDRVGIW 74

Query: 62  FPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLL--------------- 106
            PN  E+V+   A  +  A    +N AY   E E+ L+ S  K L               
Sbjct: 75  APNVPEWVLTQFATAKIGAILVTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAML 134

Query: 107 --LTPAEGNAAAQAAASKLNISHATATLLDAD--------SELTLSLAHSESDTNAISKL 156
             L P           S           L  +         EL       +    A  + 
Sbjct: 135 YELAPELATCEPGQLQSARLPELRRVIFLGDEKHPGMLNFDELLALGRAVDDAELAARQA 194

Query: 157 TNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHG 216
           T DP D     +TSGTT  PKG  LT  N+  +   I    KLTE D   I +PL+H  G
Sbjct: 195 TLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEAMKLTEEDRLCIPVPLYHCFG 254

Query: 217 MLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEP 276
           M+ G L+    GA +  P  G F        + +   T    VPT+    LD       P
Sbjct: 255 MVLGNLACVTHGATMVYPGEG-FDPLATLAAVEEERCTALYGVPTMFIAELD------HP 307

Query: 277 VYPK--LRFIRS--CSASLAPV-ILSRLEEAFGAP-VLEAYAMTEATHLM--SSNPLPED 328
            + +  L  +R+   + S  P+ ++ R+ +      V  AY MTE + +   +    P +
Sbjct: 308 DFARFDLSSLRTGIMAGSPCPIEVMKRVIDKMHMSEVTIAYGMTETSPVSTQTRTDDPLE 367

Query: 329 GPHKPGSVGRPV-GQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF 386
              +  +VGR +   E+ I+D E G     G +GE+C RG +V KGY N+PE    A   
Sbjct: 368 --KRVTTVGRALPHLEVKIVDPETGETVPRGEQGELCTRGYSVMKGYWNDPEKTAEAIDA 425

Query: 387 -GWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
            GW HTGD+   D +GY+++VGRIK++I RGG
Sbjct: 426 DGWMHTGDLAVMDEEGYVNIVGRIKDMIIRGG 457

Length = 559

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score =  142 bits (360), Expect = 3e-37
 Identities = 121/408 (29%), Positives = 182/408 (44%), Gaps = 25/408 (6%)

Query: 26  SGKFDLTYSRIHELVERAASRLV-AAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAP 84
           S  F ++YS +  LV+  A+ L    G+  GDVV L  PN+V F ++FLAV+        
Sbjct: 62  STGFSISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLLPNSVYFPVIFLAVLSLGGIVTT 121

Query: 85  LNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLA 144
           +N + +  E +  + D    L  T  E           +              E      
Sbjct: 122 MNPSSSLGEIKKRVVDCSVGLAFTSPENVEKLSPLGVPVIGVPENYDFDSKRIEFPKFYE 181

Query: 145 HSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNI----KSVYKLT 200
             + D + + K      DVA  +++SGTT   KGV LT  NL A V        S Y+  
Sbjct: 182 LIKEDFDFVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYP 241

Query: 201 ESDSTVI-VLPLFHVHGM---LAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWY 256
            SD+  +  LP+FH++G+   + GLLS    G+ + +    RF AS   + + ++  T +
Sbjct: 242 GSDNVYLAALPMFHIYGLSLFVVGLLS---LGSTIVV--MRRFDASDMVKVIDRFKVTHF 296

Query: 257 TAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGA----PVLEAYA 312
             VP I   +     AK       L+ ++  S   AP+    +++          ++ Y 
Sbjct: 297 PVVPPILMALT--KKAKGVCGEV-LKSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGYG 353

Query: 313 MTEATHLMSSNPLPEDGPHKPGSVG--RPVGQEIAILDEIGVPQEGGAKGEVCIRGPNVT 370
           MTE+T  + +     +   K  SVG   P  Q   +    G     G  GE+ I+GP V 
Sbjct: 354 MTEST-AVGTRGFNTEKLSKYSSVGLLAPNMQAKVVDWSTGCLLPPGNCGELWIQGPGVM 412

Query: 371 KGYKNNPEANKSAFLF-GWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
           KGY NNP+A +S     GW  TGDI YFD DGYL++V R+KE+I   G
Sbjct: 413 KGYLNNPKATQSTIDKDGWLRTGDIAYFDEDGYLYIVDRLKEIIKYKG 460

Length = 560

>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents

 Score =  139 bits (353), Expect = 3e-36
 Identities = 125/440 (28%), Positives = 180/440 (40%), Gaps = 67/440 (15%)

Query: 31  LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
            +Y+ + E  ER  + L A G+  GD V L      +FV  F A +       P+    T
Sbjct: 40  QSYAELLEEAERILAGLRALGLKPGDSVILQLERNEDFVTAFWACVLGGFVPVPVAVPPT 99

Query: 91  PDEFEFYLSDSESKL-----------LLTPAEGNAAAQAAASKLNISHATATLLDADSEL 139
            DE     + + +KL           +LT    +AA  AA + L     T   L+A   L
Sbjct: 100 YDE----PNAAVAKLRNIWELLGSPVILT----DAALVAALAGL----RTRAGLEALRVL 147

Query: 140 TLSLAHS-ESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYK 198
            +    S   D          P D AL L TSG+T  PK V LT  N+ A  +    V  
Sbjct: 148 AIEELRSAPPDAPL---HPARPDDPALLLLTSGSTGVPKCVVLTHRNILARSAGTVQVNG 204

Query: 199 LTESDSTVIVLPLFHVHGML-AGLLSSFAAGAAVTLPAAGRFSASTFWQDMI-KYNATWY 256
            T  D ++  +PL HV G++   L   +     + +P     +    W D+I +Y  T  
Sbjct: 205 FTPDDVSLNWMPLDHVGGIVMLHLRDVYLGCQQIHVPTDYILADPLRWLDLIDRYRVT-I 263

Query: 257 TAVPTIHQIVLDRHVAKPEP---VYPKLRFIRSCS-ASLAPVI--LSRLEEAFGAP---V 307
           T  P     +L+  + + E        LR+I +   A +A  I     L   +G P   +
Sbjct: 264 TWAPNFAFALLNDALERIEDRSWDLSSLRYIINAGEAVVAKTIRRFLELLAPYGLPADAI 323

Query: 308 LEAYAMTEATHLMSSNPLPEDGPHKPG------------------------SVGRPV-GQ 342
             A+ M+E    ++ +     GP   G                         +GRP+ G 
Sbjct: 324 RPAFGMSETCSGVTYSRGFRTGPDTGGVLVDSLTGPLRFAAADHPEAVTFVELGRPIPGV 383

Query: 343 EIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF-GWFHTGDIGYFDSDG 401
            I I+DE G     G  G + +RGP VT GY  NPEAN  AF   GWF TGD+G+   DG
Sbjct: 384 AIRIVDEDGALLPEGEVGRLQVRGPTVTSGYYRNPEANAEAFTEDGWFRTGDLGFLH-DG 442

Query: 402 YLHLVGRIKELIN-RGGNLH 420
            L + GR K++I   G N +
Sbjct: 443 RLTITGREKDMIIINGVNYY 462

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560

>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  140 bits (353), Expect = 4e-36
 Identities = 106/416 (25%), Positives = 168/416 (40%), Gaps = 36/416 (8%)

Query: 5   TLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPN 64
           T+  L  +         AL V G   LTY+ +     R A  L++ G+  G+ VA+    
Sbjct: 228 TIHLLFEEQAATTPDAVAL-VRGGQQLTYAELDARANRLARLLISLGVGPGETVAILADR 286

Query: 65  TVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLN 124
           ++E V+  LAV++A A   PL+  Y  +   + L DS   LLLT        QA     +
Sbjct: 287 SLELVVALLAVLKAGAAYVPLDPLYPAERLAYILEDSRPTLLLT--------QAHLRVDD 338

Query: 125 ISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQN 184
           +      L DA SE+  +                    +A  ++TSG+T +PKGV +   
Sbjct: 339 VGLPGLALDDALSEIPDT---------DPIPQALLGDALAYIIYTSGSTGQPKGVRIEHR 389

Query: 185 NLAASVSNIKSVYKLTESDSTVIVLPL------FHVHGMLAGLLSSFAAGAAVTLPAAGR 238
            LA  +++  + + L   D    VL L        V  +   LL        V  PA  +
Sbjct: 390 ALANLLNDAGARFGLDADD---RVLALASLSFDASVFEIFGALLE---GARLVLAPALLQ 443

Query: 239 FSASTFWQDMIKYNATWYTAVP-TIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILS 297
              +   + +     T    VP  +  ++L            +LR + S   +L   ++ 
Sbjct: 444 VDPAALLELLEAQGITVLLLVPLLLRLLLLAALAPDLISPCERLRQLLSGGEALPLALVQ 503

Query: 298 RLEEAFGAP--VLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQ 354
           RL +       +L  Y  TEAT    S P+  +   +   +GRPV   ++ ILD+   P 
Sbjct: 504 RLLQLAALARRLLNLYGPTEATLDAPSFPISAELESRV-PIGRPVANTQLYILDQGLRPL 562

Query: 355 EGGAKGEVCIRGPNVTKGYKNNPEANKSAFL-FGWFHTGDIGYFDSDGYLHLVGRI 409
             G  GE+ I G  +  GY N P+     F+    + TGD+    +DG L  +GR 
Sbjct: 563 PLGVPGELYIAGLGLALGYLNRPDLTAERFIALRLYRTGDLARPLADGALEYLGRK 618

Length = 642

>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS)

 Score =  137 bits (347), Expect = 4e-36
 Identities = 95/402 (23%), Positives = 157/402 (39%), Gaps = 97/402 (24%)

Query: 31  LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
           LTY+ +     + A  L++ G+  GD+VAL    +    +  LAV++A A   P++ +  
Sbjct: 18  LTYAELDRRANKLAHHLISLGVRPGDIVALCLERSPWLYVAILAVLKAGAAYVPIDPSAP 77

Query: 91  PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDT 150
            +  +F + DS + ++LT                                          
Sbjct: 78  VERLQFIIEDSGATVVLT------------------------------------------ 95

Query: 151 NAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLP 210
                  + P D A  ++TSG+T +PKGV +T  N+   +    ++  +   D    VL 
Sbjct: 96  -------SSPDDPAYVIYTSGSTGKPKGVVITHRNICNFLRAEGAILGIRPGD---RVLQ 145

Query: 211 LFHVH--GMLAGLLSSFAAGAAVTLPAAGRFSASTFWQD-MIKYNATWYTAVPTIHQIVL 267
              +     +  + ++  AG   TL             + + +   T     P++  ++ 
Sbjct: 146 FASIAFDVSILEIFTTLLAGG--TLVIPPEELRLEDLAEFLNRLRVTVAHLTPSLLALL- 202

Query: 268 DRHVAKPEPVYPKLRFI----RSCSASLAPVILSRLEEAFGAPV--LEAYAMTEATHLMS 321
                 PE V P LR +     +C  +L         + +  P   L  Y  TEAT   +
Sbjct: 203 -----DPEDV-PSLRTLILGGEACPQALV--------DRWSKPRRLLNTYGPTEATVTAT 248

Query: 322 SNPLPEDGPHKPGSVGRPVG-QEIAILD---EIGVPQEGGAKGEVCIRGPNVTKGYKNNP 377
           ++ L    P KP ++GRP+      +LD   E  VP   GA GE+CI GP V +GY N P
Sbjct: 249 ASRL---TPGKPVNIGRPLPNYTCWVLDPDLEPLVPI--GAVGELCIGGPGVARGYLNRP 303

Query: 378 EANKSAFLFG--W--------FHTGDIGYFDSDGYLHLVGRI 409
           E     F+    W        + TGD+  +  DG L  +GR 
Sbjct: 304 ELTAEKFIPDPFWLNNPGGRIYRTGDLVRYLEDGSLEFLGRK 345

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447

>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional

 Score =  138 bits (350), Expect = 6e-36
 Identities = 122/440 (27%), Positives = 193/440 (43%), Gaps = 51/440 (11%)

Query: 14  IDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAA-GINAGDVVALTFPNTVEFVIMF 72
           + +F+ + A    GK  +TY    +LVE+ A+ L+    +  GD VAL  PN +++ I  
Sbjct: 35  VAKFADRPAYHSFGK-TITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIAT 93

Query: 73  LAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLL---------------TPAE------ 111
             V+RA  T   +N  YTP E +  L DS + +L+               TP +      
Sbjct: 94  FGVLRAGLTVVNVNPLYTPRELKHQLIDSGASVLVVIDNFGTTVQQVIADTPVKQVITTG 153

Query: 112 -GNAAAQAAASKLNISHATATLLDADSELTLSLAHSES----DTNAISKLTNDPSDVALF 166
            G+      A+ +N        L  +  +  ++   E+      +++  L  +P D+A  
Sbjct: 154 LGDMLGFPKAALVNFVVKYVKKLVPEYRINGAIRFREALALGRKHSMPTLQIEPDDIAFL 213

Query: 167 LHTSGTTSRPKGVPLTQNNLAASVSN----IKSVYKLTESDSTVIV-LPLFHVHGMLAGL 221
            +T GTT   KG  LT  NL A++      +    KL E    VI  LPL+H+  + A  
Sbjct: 214 QYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKLEEGCEVVITALPLYHIFALTANG 273

Query: 222 LSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKL 281
           L     G    L +  R     F +++ K   T +T V T+   +L+       P + ++
Sbjct: 274 LVFMKIGGCNHLISNPR-DMPGFVKELKKTRFTAFTGVNTLFNGLLN------TPGFDQI 326

Query: 282 RFIRSCSASLA------PVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGS 335
            F  S   +L         +  R ++  G  ++EAY +TE +     NPL        GS
Sbjct: 327 DF-SSLKMTLGGGMAVQRSVAERWKQVTGLTLVEAYGLTETSPAACINPL--TLKEYNGS 383

Query: 336 VGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAF-LFGWFHTGD 393
           +G P+   +  I D+ G     G  GE+CI+GP V KGY   PE         GW HTGD
Sbjct: 384 IGLPIPSTDACIKDDAGTVLAIGEIGELCIKGPQVMKGYWKRPEETAKVMDADGWLHTGD 443

Query: 394 IGYFDSDGYLHLVGRIKELI 413
           I   D  G++++V R K++I
Sbjct: 444 IARMDEQGFVYIVDRKKDMI 463

Length = 560

>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated

 Score =  138 bits (349), Expect = 1e-35
 Identities = 120/421 (28%), Positives = 183/421 (43%), Gaps = 49/421 (11%)

Query: 31  LTYSRIHELVERAASRLVAA------GINAGDVVALTFPNTVEFVIMFLAVIRARATAAP 84
           +T+ +   L ER  SR  AA      G+  GD VAL  PN +++ I    ++RA      
Sbjct: 49  MTFRK---LEER--SRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALFGILRAGMIVVN 103

Query: 85  LNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLL-DADS--ELTL 141
           +N  YTP E E  L+DS +K ++  +      +    K  + H   T + D  S  + TL
Sbjct: 104 VNPLYTPRELEHQLNDSGAKAIVIVSNFAHTLEKVVFKTPVKHVILTRMGDQLSTAKGTL 163

Query: 142 ---------------SLAHSESDTNAISK----------LTNDPSDVALFLHTSGTTSRP 176
                           L  + S  +A+ K          L  +  D+A   +T GTT   
Sbjct: 164 VNFVVKYIKRLVPKYHLPDAISFRSALHKGRRMQYVKPELVPE--DLAFLQYTGGTTGVA 221

Query: 177 KGVPLTQNNLAASVSNIKSVYK--LTE-SDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTL 233
           KG  LT  N+ A++   K+ Y   L    +  V  LPL+H+  +    L     G    L
Sbjct: 222 KGAMLTHRNMLANLEQAKAAYGPLLHPGKELVVTALPLYHIFALTVNCLLFIELGGQNLL 281

Query: 234 PAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAP 293
               R     F +++ KY  T  T V T+   +L+    + E  +  L+       ++  
Sbjct: 282 ITNPR-DIPGFVKELKKYPFTAITGVNTLFNALLNNEEFQ-ELDFSSLKLSVGGGMAVQQ 339

Query: 294 VILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGV 352
            +  R  +  G  +LE Y +TE + L+S NP   D  +  GS+G PV   EI ++D+ G 
Sbjct: 340 AVAERWVKLTGQYLLEGYGLTECSPLVSVNPY--DLDYYSGSIGLPVPSTEIKLVDDDGN 397

Query: 353 PQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKEL 412
               G  GE+ ++GP V  GY   PEA       GW  TGDI   D +G+L +V R K++
Sbjct: 398 EVPPGEPGELWVKGPQVMLGYWQRPEATDEVIKDGWLATGDIAVMDEEGFLRIVDRKKDM 457

Query: 413 I 413
           I
Sbjct: 458 I 458

Length = 560

>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family

 Score =  136 bits (343), Expect = 3e-35
 Identities = 101/394 (25%), Positives = 169/394 (42%), Gaps = 17/394 (4%)

Query: 31  LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
           L+Y  +   V R  + L   G+   + V L   + V+F I FL  IRA      LN   T
Sbjct: 31  LSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPVALNTLLT 90

Query: 91  PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKL-NISHATATLLDADSELTLS---LAHS 146
            D++ + L DS ++++    E     +AA  K  ++ H          E+ L+      S
Sbjct: 91  ADDYAYMLEDSRARVVFVSGELLPVIKAALGKSPHLEHRVVVGRPEAGEVQLAELLATES 150

Query: 147 ESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNI-KSVYKLTESDST 205
           E    A ++      D A +L++SG+T  PKGV  T +N   +     ++   + E D  
Sbjct: 151 EQFKPAATQ----ADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTLGIREDDVV 206

Query: 206 VIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQI 265
                LF  +G+   L    + GA   L    R +    +  + ++  T +  VPT++  
Sbjct: 207 FSAAKLFFAYGLGNALTFPMSVGATTVLMGE-RPTPDAVFDRLRRHQPTIFYGVPTLYAA 265

Query: 266 VL-DRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNP 324
           +L D ++   + V  +LR   S   +L   +  R +  FG  +++    TE  H+  SN 
Sbjct: 266 MLADPNLPAEDQV--RLRLCTSAGEALPAEVGQRWQARFGVDIVDGIGSTEMLHIFLSN- 322

Query: 325 LPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSA 383
           LP D   + G+ G+PV G  + ++ + G     G  GE+ I GP+    Y NN    +  
Sbjct: 323 LPGD--VRYGTSGKPVPGYRLRLVGDGGQDVAAGEPGELLISGPSSATMYWNNRAKTRDT 380

Query: 384 FLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
           F   W  +GD    + DG     GR  +++   G
Sbjct: 381 FQGEWTRSGDKYVRNDDGSYTYAGRTDDMLKVSG 414

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508

>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional

 Score =  136 bits (346), Expect = 3e-35
 Identities = 121/413 (29%), Positives = 176/413 (42%), Gaps = 44/413 (10%)

Query: 30  DLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAY 89
             TY  + EL  + A+ L   G+  GD V +  P   E     L  ++  A   PL  A+
Sbjct: 73  KYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFALLGALKNGAIVGPLFEAF 132

Query: 90  TPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLL-DADSEL---TLSLA- 144
             +     L DSE+K+L+T        +  A  L        LL   D E    TL    
Sbjct: 133 MEEAVRDRLEDSEAKVLITTPA--LLERKPADDL--PSLKHVLLVGEDVEEGPGTLDFNA 188

Query: 145 --HSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTES 202
                SD   I     D  D A+  +TSG+T +PKGV    N +       K V  L E 
Sbjct: 189 LMEQASDEFDIEWT--DREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVLDLHED 246

Query: 203 DSTVIVLPLFH-------VHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMI-KYNAT 254
           D       ++        V G   G+ + +  GA   +   GRFS    W  ++  Y  T
Sbjct: 247 D-------VYWCTADPGWVTGTSYGIFAPWLNGAT-NVIDGGRFSP-ERWYRILEDYKVT 297

Query: 255 -WYTAVPTIHQIVLDRHVAKPEPV----YPKLRFIRSCSASLAPVILSRLEEAFGAPVLE 309
            WYTA PT  ++++    A  + V       LR I S    L P ++    + FG P+ +
Sbjct: 298 VWYTA-PTAIRMLMG---AGDDLVKKYDLSSLRHILSVGEPLNPEVVRWGMKVFGLPIHD 353

Query: 310 AYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRG-- 366
            + MTE   +M +N    D   KPGS+G+P+ G E AI+D+ G        G + I+   
Sbjct: 354 NWWMTETGGIMIANYPAMD--IKPGSMGKPLPGIEAAIVDDQGNELPPNRMGNLAIKKGW 411

Query: 367 PNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNL 419
           P++ +G  NNPE  +S F   W+ +GD  Y D DGY    GR+ ++I   G  
Sbjct: 412 PSMMRGIWNNPEKYESYFAGDWYVSGDSAYMDEDGYFWFQGRVDDVIKTSGER 464

Length = 570

>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1

 Score =  136 bits (343), Expect = 4e-35
 Identities = 121/427 (28%), Positives = 196/427 (45%), Gaps = 16/427 (3%)

Query: 2   EGVTLIGLLNQVIDQFSSKRAL--SVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVA 59
           + +TL   + Q  + ++ K A   +V+GK  +TY  +     R A  L + G+  G VV 
Sbjct: 26  DKLTLPDFVLQDAELYADKVAFVEAVTGK-AVTYGEVVRDTRRFAKALRSLGLRKGQVVV 84

Query: 60  LTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAA 119
           +  PN  E+ I+ L ++ A    +  N      E +     + +KL++T        +  
Sbjct: 85  VVLPNVAEYGIVALGIMAAGGVFSGANPTALESEIKKQAEAAGAKLIVTNDTNYGKVKGL 144

Query: 120 ASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGV 179
              + +          + +  L  A    DT+   ++    +D+     +SGTT   KGV
Sbjct: 145 GLPVIVLGEEKIEGAVNWKELLEAADRAGDTSDNEEILQ--TDLCALPFSSGTTGISKGV 202

Query: 180 PLTQNNLAASV-SNIKSV-YKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAG 237
            LT  NL A++ S++ SV  ++     T+ ++P FH++G+     ++      V      
Sbjct: 203 MLTHRNLVANLCSSLFSVGPEMIGQVVTLGLIPFFHIYGITGICCATLRNKGKVV--VMS 260

Query: 238 RFSASTFWQDMIKYNATWYTAVP-TIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVIL 296
           RF   TF   +I    ++   VP  I  +V +  V + +    KL+ I + +A LAP +L
Sbjct: 261 RFELRTFLNALITQEVSFAPIVPPIILNLVKNPIVEEFDLSKLKLQAIMTAAAPLAPELL 320

Query: 297 SRLEEAF-GAPVLEAYAMTEAT--HLMSSNPLPEDGPHKPGSVGRPVGQ-EIAILD-EIG 351
           +  E  F G  V EAY +TE +   L   +P    G  K  SVG  +   E+  +D + G
Sbjct: 321 TAFEAKFPGVQVQEAYGLTEHSCITLTHGDPEKGHGIAKKNSVGFILPNLEVKFIDPDTG 380

Query: 352 VPQEGGAKGEVCIRGPNVTKGYKNNPE-ANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIK 410
                   GE+C+R   V +GY NN E  +++    GW HTGDIGY D DG + +V RIK
Sbjct: 381 RSLPKNTPGELCVRSQCVMQGYYNNKEETDRTIDEDGWLHTGDIGYIDDDGDIFIVDRIK 440

Query: 411 ELINRGG 417
           ELI   G
Sbjct: 441 ELIKYKG 447

Length = 546

>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated

 Score =  136 bits (343), Expect = 6e-35
 Identities = 115/446 (25%), Positives = 183/446 (41%), Gaps = 56/446 (12%)

Query: 9   LLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAA------GINAGDVVALTF 62
           +L Q   +F+ K A S  GK  LTY  +++L     S   AA       +  GD +A+  
Sbjct: 29  VLKQSCQRFADKPAFSNLGK-TLTYGELYKL-----SGAFAAWLQQHTDLKPGDRIAVQL 82

Query: 63  PNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASK 122
           PN +++ +     +RA       N  YT  E E   +DS +K L+  A     A+    K
Sbjct: 83  PNVLQYPVAVFGAMRAGLIVVNTNPLYTAREMEHQFNDSGAKALVCLANMAHLAEKVLPK 142

Query: 123 LNISHATAT-LLDADSEL-----------------------------TLSLAHSESDTNA 152
             + H   T + D    L                              L+    +  T A
Sbjct: 143 TGVKHVIVTEVADMLPPLKRLLINAVVKHVKKMVPAYHLPQAVKFNDALAKGAGQPVTEA 202

Query: 153 ISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVY--KLTESDSTVIV-L 209
                    DVA+  +T GTT   KG  LT  NL A++   +++    L E    +I  L
Sbjct: 203 ----NPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLNEGCEILIAPL 258

Query: 210 PLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDR 269
           PL+H++      ++    G    L +  R       +++ K+  + +  + T+  + L  
Sbjct: 259 PLYHIYAFTFHCMAMMLIGNHNILISNPR-DLPAMVKELGKWKFSGFVGLNTLF-VALCN 316

Query: 270 HVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDG 329
           + A  +  +  L+   S   +L      R +E  G  + E Y MTE + ++S NP     
Sbjct: 317 NEAFRKLDFSALKLTLSGGMALQLATAERWKEVTGCAICEGYGMTETSPVVSVNPS---Q 373

Query: 330 PHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF-G 387
             + G++G PV      ++D+ G     G  GE+C++GP V KGY   PEA        G
Sbjct: 374 AIQVGTIGIPVPSTLCKVIDDDGNELPLGEVGELCVKGPQVMKGYWQRPEATDEILDSDG 433

Query: 388 WFHTGDIGYFDSDGYLHLVGRIKELI 413
           W  TGDI     DGY+ +V R K++I
Sbjct: 434 WLKTGDIALIQEDGYMRIVDRKKDMI 459

Length = 562

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score =  131 bits (332), Expect = 9e-34
 Identities = 107/418 (25%), Positives = 155/418 (37%), Gaps = 89/418 (21%)

Query: 31  LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
           LTY+ ++E   R A RL A G+  GDVVAL    + E V+  LA+++A A   PL+ AY 
Sbjct: 13  LTYAELNERANRLARRLRARGVGPGDVVALLLERSPELVVAILAILKAGAAYVPLDPAYP 72

Query: 91  PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDT 150
            +   F L DS +++LLT       A+A    L I        DA               
Sbjct: 73  AERLAFMLEDSGARVLLTDESLAPLARADQLPLVILEEELDAEDAGPPA----------- 121

Query: 151 NAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLP 210
                   D  D+A  ++TSG+T RPKGV +    +   V N  +   L   D  + + P
Sbjct: 122 -----PAVDADDLAYVMYTSGSTGRPKGVAVPHRGVVRLVRN-TNYIALDPDDRFLQLSP 175

Query: 211 L------FHVHGML-----------AGLLSSFAAGAAVTLPAAGRFSASTFW------QD 247
           L      F + G L             LL        +          +  W        
Sbjct: 176 LSFDASTFEIWGALLNGGRLVLIDKETLLDPDRLARLIA-----EQGVTVLWLTAALFNQ 230

Query: 248 MIKYNATWYTAVPTIHQI-----VLD-RHVAKPEPVYPKLRFIRSCSASLAPVILSRLEE 301
           ++  +     A+  + Q+     VL   HV +     P LR I                 
Sbjct: 231 LVDEDP---EALAGLRQLLVGGDVLSPAHVRRVLAACPGLRLI----------------- 270

Query: 302 AFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSV--GRPVGQEIA-ILDEIGVPQEGGA 358
                    Y  TE T   + + +         S+  GRP+      ILDE G P   G 
Sbjct: 271 -------NGYGPTENTTFSTCHVITRLDEA-ADSIPIGRPIPNTTVYILDEEGQPVPIGV 322

Query: 359 KGEVCIRGPNVTKGYKNNPEANKSAFL---FG----WFHTGDIGYFDSDGYLHLVGRI 409
            GE+ + G  +  GY N PE     F+   FG     + TGD+  +  DG +  +GRI
Sbjct: 323 PGELYVGGDGLALGYLNRPELTAERFVPDPFGPGERLYRTGDLARWRPDGNIEFLGRI 380

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated

 Score =  129 bits (326), Expect = 9e-33
 Identities = 82/269 (30%), Positives = 125/269 (46%), Gaps = 35/269 (13%)

Query: 159 DPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGML 218
           DP D+ + + TSGT+  PK V  T   +A++   +   + L   D   + +PLFH + ++
Sbjct: 150 DPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRFGLGPDDVCYVSMPLFHSNAVM 209

Query: 219 AGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVY 278
           AG   + AAGA++ L    +FSAS F  D+ +Y AT+   V      VL    A PE   
Sbjct: 210 AGWAVALAAGASIALRR--KFSASGFLPDVRRYGATYANYVGKPLSYVL----ATPE--R 261

Query: 279 PK-----LRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKP 333
           P      LR +       AP  ++R    FG  V++ +  TE    ++  P   D P  P
Sbjct: 262 PDDADNPLRIVYGNEG--APGDIARFARRFGCVVVDGFGSTEGGVAITRTP---DTP--P 314

Query: 334 GSVGRPVGQEIAILD-------------EIGVPQEGGAKGE-VCIRGPNVTKGYKNNPEA 379
           G++G      +AI+D             +  +     A GE V   GP   +GY N+PEA
Sbjct: 315 GALGPLPPG-VAIVDPDTGTECPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEA 373

Query: 380 NKSAFLFGWFHTGDIGYFDSDGYLHLVGR 408
           +      G + +GD+ Y D+DGY +  GR
Sbjct: 374 DAERMRGGVYWSGDLAYRDADGYAYFAGR 402

Length = 529

>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes

 Score =  126 bits (320), Expect = 4e-32
 Identities = 96/397 (24%), Positives = 170/397 (42%), Gaps = 48/397 (12%)

Query: 31  LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
           LTY  +       A+ L AAG+  GD+VA+  P   E ++  L ++ A A   P++    
Sbjct: 13  LTYGELARRANAIAAALRAAGVAPGDLVAVVMPKGWEQIVAVLGILLAGAAYVPIDPDQP 72

Query: 91  PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDT 150
            +     L+ + ++ +LT            ++   +     + D         A +ES  
Sbjct: 73  AERRAAILARAGARAVLT--------DPGLAQPEEAPDLLVVADDA-------AAAESPA 117

Query: 151 NAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIV-- 208
               ++  DP D+A  + TSG+T  PKGV +T      ++ ++   + +  +D  + +  
Sbjct: 118 PPPPRV--DPDDLAYVIFTSGSTGEPKGVMITHRAAVNTILDVNRRFGVGPADRVLALSA 175

Query: 209 ----LPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMI-KYNATWYTAVPTIH 263
               L ++ + G L       +AGAA+ LP   R      W +++ ++  T + +VP + 
Sbjct: 176 LHFDLSVYDIFGAL-------SAGAALVLPDEARRRDPDHWAELVQRHGVTVWNSVPALM 228

Query: 264 QIVLDRHVAKPEPVYPKLRFIRSCSASLAPVIL-SRLEEAF-GAPVLEAYAMTEATHLMS 321
            ++L  +      + P LR +   S    P+ L  RL     GA ++     TEA+  + 
Sbjct: 229 DMLLT-YAEDAARLLPSLRLV-MLSGDWIPLDLPRRLRALAPGARLVSLGGATEAS--IW 284

Query: 322 SN--PLPEDGPHKPGSV--GRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNN 376
           S   P+ +  P    S+  G+P   Q+  +LDE G        GE+ I G  V  GY  +
Sbjct: 285 SIYYPIDDVDPDWR-SIPYGKPLPNQKFYVLDEDGRDCPDWVPGELYIGGVGVALGYWGD 343

Query: 377 PEANKSAFLFG-----WFHTGDIGYFDSDGYLHLVGR 408
           PE     F+        + TGD+G +  DG +  +GR
Sbjct: 344 PELTAERFITHRTGERLYRTGDLGRYRPDGTIEFLGR 380

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476

>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like

 Score =  127 bits (321), Expect = 4e-32
 Identities = 108/410 (26%), Positives = 170/410 (41%), Gaps = 36/410 (8%)

Query: 30  DLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAY 89
             T+  + +   +AA+   A GI  GD V LT     EF    LA+ +  A A P     
Sbjct: 47  IFTFGDLKDYSNKAANFFKALGIGKGDTVMLTLKRRYEFWFSMLALHKIGAIAIPATHML 106

Query: 90  TPDEFEFYLSDSESKLLLTPAEGNAAA--QAAASKLNISHATATLLDAD-------SELT 140
           T  +  + +  +  K+++   E         AA +         + D          +  
Sbjct: 107 TAKDIVYRIEAAGIKMIVCIGEDGVPEHIDEAAPECGSPTLLVLVGDPVPEGWIDFDKEI 166

Query: 141 LSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGV------PLTQNNLAASVSNIK 194
            + +             ND  D+ L   TSGTT  PK V      PL     A    N+K
Sbjct: 167 ENASPDFERPTGNDATCND--DILLVYFTSGTTGMPKMVEHDHTYPLGHIVTAKYWQNVK 224

Query: 195 -SVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNA 253
                LT +D+            +   L   + AGAAV +    +F      + + KY  
Sbjct: 225 EGGLHLTVADTG-------WGKAVWGKLYGQWIAGAAVFVYDYDKFDPKNLLEKIEKYGV 277

Query: 254 TWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAM 313
           T + A PTI++ ++   ++K +     LR+  +    L P + +  +E  G  ++E +  
Sbjct: 278 TTFCAPPTIYRFLIKEDLSKYD--LSSLRYCTTAGEPLNPEVFNTFKEKTGIKLMEGFGQ 335

Query: 314 TEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPN---- 368
           TE T  +++ P  E    KPGS+G+P  G +I I+D  G   E G +GE+ IR  +    
Sbjct: 336 TETTLTIATFPWMEP---KPGSMGKPSPGYDIDIIDPDGKSCEVGEEGEIVIRTSDGKPL 392

Query: 369 -VTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
            +  GY  +PE     +  G++HTGD  + D DGYL  VGR  +LI   G
Sbjct: 393 GLFMGYYRDPERTAEVWHDGYYHTGDTAWMDEDGYLWFVGRADDLIKSSG 442

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537

>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated

 Score =  124 bits (313), Expect = 6e-31
 Identities = 113/404 (27%), Positives = 168/404 (41%), Gaps = 38/404 (9%)

Query: 31  LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
           LTY+ + E     A  L+A G+ AGD VA+   N   FV+   A  +  A    LN  ++
Sbjct: 75  LTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAAGKVGARIILLNTGFS 134

Query: 91  PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSES-- 148
             +     +    K L+   E      A    L    A     D D     +    +   
Sbjct: 135 GPQLAEVAAREGVKALVYDDEFTDLLSALPPDLGRLRAWGGNPDDDEPSGSTDETLDDLI 194

Query: 149 DTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIV 208
             ++ + L   P    + + TSGTT  PKG P  + +  A ++ + S       ++T++ 
Sbjct: 195 AGSSTAPLPKPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRVPFRAGETTLLP 254

Query: 209 LPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLD 268
            P+FH  G     L+  A G+ V L    RF      +D+ K+ AT    VP +    L 
Sbjct: 255 APMFHATGWAHLTLA-MALGSTVVLRR--RFDPEATLEDIAKHKATALVVVPVM----LS 307

Query: 269 RHVAKPEPVYPK-----LRFIRSCSASLAPVILSRLEEAFGAPVL-------EAYAMTEA 316
           R +     V  K     L+ I    ++L+P + +R  EAFG PVL       E    T A
Sbjct: 308 RILDLGPEVLAKYDTSSLKIIFVSGSALSPELATRALEAFG-PVLYNLYGSTEVAFATIA 366

Query: 317 THLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKN 375
           T        PED    PG+VGRP  G  + ILDE G     G  G + +      +GY +
Sbjct: 367 T--------PEDLAEAPGTVGRPPKGVTVKILDENGNEVPRGVVGRIFVGNGFPFEGYTD 418

Query: 376 --NPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
             + +        G   +GD+GYFD DG L + GR  ++I  GG
Sbjct: 419 GRDKQIID-----GLLSSGDVGYFDEDGLLFVDGRDDDMIVSGG 457

Length = 549

>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional

 Score =  123 bits (310), Expect = 1e-30
 Identities = 108/404 (26%), Positives = 177/404 (43%), Gaps = 18/404 (4%)

Query: 25  VSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAP 84
           + G+   +Y  +++  +  A  L   GI  GD   +   N  EF I F A+++     AP
Sbjct: 43  ICGERQFSYRELNQASDNLACSLRRQGIKPGDTALVQLGNVAEFYITFFALLKL--GVAP 100

Query: 85  LNAAYTPDEFEF--YLSDSESKLLLTPAEGNA-AAQAAASKLNISHAT-ATLLDADSELT 140
           +NA ++    E   Y S  E  LL+   +    +     + L   H++   +L  + +  
Sbjct: 101 VNALFSHQRSELNAYASQIEPALLIADRQHALFSDDDFLNTLVAEHSSLRVVLLLNDDGE 160

Query: 141 LSLAHSESDTNAISKLTNDPSD-VALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKL 199
            SL  + +        T  P+D VA F  + G+T  PK +P T N+   SV     +   
Sbjct: 161 HSLDDAINHPAEDFTATPSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICGF 220

Query: 200 TESDSTVIVLPLFHVHGMLA-GLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTA 258
           T     +  LP  H + M + G L  F AG  V L  A   SA+  +  + K+       
Sbjct: 221 TPQTRYLCALPAAHNYPMSSPGALGVFLAGGTVVL--APDPSATLCFPLIEKHQVNVTAL 278

Query: 259 VPTIHQIVLDRHVAKPEPVYP--KLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEA 316
           VP    + L + +A+         L+ ++   A L+  +  R+    G  + + + M E 
Sbjct: 279 VPPAVSLWL-QAIAEGGSRAQLASLKLLQVGGARLSETLARRIPAELGCQLQQVFGMAEG 337

Query: 317 THLMSSNPLPEDGPHKPGSVGRPVG--QEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYK 374
             L++   L +       + GRP+    E+ + D  G P   G  G +  RGP   +GY 
Sbjct: 338 --LVNYTRLDDSDERIFTTQGRPMSPDDEVWVADADGNPLPQGEVGRLMTRGPYTFRGYY 395

Query: 375 NNPEANKSAF-LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
            +P+ N SAF   G++ +GD+   D DGY+ +VGR K+ INRGG
Sbjct: 396 KSPQHNASAFDANGFYCSGDLVSIDPDGYITVVGREKDQINRGG 439

Length = 536

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score =  122 bits (309), Expect = 6e-30
 Identities = 80/269 (29%), Positives = 116/269 (43%), Gaps = 25/269 (9%)

Query: 159  DPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGML 218
             P D A  + +SG+   PKGV L+ +N+ +++  I  V+ L   D  +  LP FH  G+ 
Sbjct: 780  KPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVFNLRNDDVILSSLPFFHSFGLT 839

Query: 219  AGL---LSSFAAGAAVTLPAAGRFSASTFWQDMI-KYNATWYTAVPTIHQIVLDRHVAKP 274
              L   L           P      A      ++ K+ AT     PT  ++ L      P
Sbjct: 840  VTLWLPLLEGIKVVYHPDPTDALGIA-----KLVAKHRATILLGTPTFLRLYLRNKKLHP 894

Query: 275  EPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLP-----EDG 329
              ++  LR + + +  L P +    EE FG  +LE Y  TE + + S N LP     +  
Sbjct: 895  L-MFASLRLVVAGAEKLKPEVADAFEEKFGIRILEGYGATETSPVASVN-LPDVLAADFK 952

Query: 330  PH---KPGSVGRPV-GQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSA- 383
                 K GSVG P+ G  + I+D E       G  G + I GP V KGY  +PE      
Sbjct: 953  RQTGSKEGSVGMPLPGVAVRIVDPETFEELPPGEDGLILIGGPQVMKGYLGDPEKTAEVI 1012

Query: 384  ---FLFGWFHTGDIGYFDSDGYLHLVGRI 409
                  GW+ TGD G+ D DG+L +  R 
Sbjct: 1013 KDIDGIGWYVTGDKGHLDEDGFLTITDRY 1041

Length = 1146

>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated

 Score =  121 bits (305), Expect = 7e-30
 Identities = 113/412 (27%), Positives = 167/412 (40%), Gaps = 32/412 (7%)

Query: 31  LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
           L+ + +  LV+R A+ L A G+  GD VA+  PN +E+V++FLA  R  AT   +N  Y 
Sbjct: 36  LSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFLACARLGATVIAVNTRYR 95

Query: 91  PDEFEFYLSDSESKLLL----------------TPAEGNAAAQAAASKLNISHATATLLD 134
             E    L    ++ L+                 P +     +A A   + + AT     
Sbjct: 96  SHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDAADATPAPAP 155

Query: 135 ADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIK 194
                  +L        A  +   DP   AL   TSGTTS PK V   Q  L      I 
Sbjct: 156 GARVQLFALPDPAPPAAAGER-AADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIA 214

Query: 195 SVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAA-VTLPAAGRFSASTFWQDMIKYNA 253
             Y        +  LP   V G  + LL + A GA  V  P    F A+   + + ++  
Sbjct: 215 RAYGYDPGAVLLAALPFCGVFGF-STLLGALAGGAPLVCEPV---FDAARTARALRRHRV 270

Query: 254 TWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAM 313
           T       + + +LD   A     +P  R     S + A   L+ L  A G P+   Y  
Sbjct: 271 THTFGNDEMLRRILD--TAGERADFPSARLFGFASFAPALGELAALARARGVPLTGLYGS 328

Query: 314 TEATHLMSSNPLPEDGPHKPGSVGRPVGQEIAILDEIGVPQEG-----GAKGEVCIRGPN 368
           +E   L++  P  +    +    GRP   E  +      PQ+G     G  GE+ IR P+
Sbjct: 329 SEVQALVALQPATDPVSVRIEGGGRPASPEARV--RARDPQDGALLPDGESGEIEIRAPS 386

Query: 369 VTKGYKNNPEANKSAFLF-GWFHTGDIGYFDSDGYLHLVGRIKELINRGGNL 419
           + +GY +NP+A   A    G+F TGD+GY   DG      R+ + +  GG L
Sbjct: 387 LMRGYLDNPDATARALTDDGYFRTGDLGYTRGDGQFVYQTRMGDSLRLGGFL 438

Length = 540

>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated

 Score =  121 bits (305), Expect = 8e-30
 Identities = 114/439 (25%), Positives = 174/439 (39%), Gaps = 65/439 (14%)

Query: 25  VSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAP 84
           + G    T++  +    R AS L   GI  GD VA+  PN    V     V  A A    
Sbjct: 38  IHGDRRRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGVPMAGAVLNT 97

Query: 85  LNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDAD-------- 136
           LN         F L   E+K+L+   E    A+ A + L        ++D D        
Sbjct: 98  LNTRLDAASIAFMLRHGEAKVLIVDTEFAEVAREALALLP--GPKPLVIDVDDPEYPGGR 155

Query: 137 --SELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAA--SVSN 192
               L      +  D +    L  D  D     +TSGTT  PKGV +  +  A   ++SN
Sbjct: 156 FIGALDYEAFLASGDPDFAWTLPADEWDAIALNYTSGTTGNPKGV-VYHHRGAYLNALSN 214

Query: 193 I-------KSVYKLTESDSTVIVLPLFHVHG------MLAGLLSSFAAGAAVTLPAAGRF 239
           I         VY  T        LP+FH +G      + A       AG  V L    + 
Sbjct: 215 ILAWGMPKHPVYLWT--------LPMFHCNGWCFPWTVAA------RAGTNVCLR---KV 257

Query: 240 SASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRL 299
                +  + ++  T Y   P +   +++        +   +  +    A+    +++++
Sbjct: 258 DPKLIFDLIREHGVTHYCGAPIVLSALINAPAEWRAGIDHPVHAM-VAGAAPPAAVIAKM 316

Query: 300 EEAFGAPVLEAYAMTE--------ATHLMSSNPLPEDGPHKPGS---VGRPVGQEIAILD 348
           EE  G  +   Y +TE        A      + LP D   +  +   V  P+ + + +LD
Sbjct: 317 EEI-GFDLTHVYGLTETYGPATVCAWQ-PEWDALPLDERAQLKARQGVRYPLQEGVTVLD 374

Query: 349 -EIG--VPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHL 405
            +    VP +G   GE+  RG  V KGY  NP+A + AF  GWFHTGD+     DGY+ +
Sbjct: 375 PDTMQPVPADGETIGEIMFRGNIVMKGYLKNPKATEEAFAGGWFHTGDLAVLHPDGYIKI 434

Query: 406 VGRIKELINRGGNLHESIS 424
             R K++I  GG   E+IS
Sbjct: 435 KDRSKDIIISGG---ENIS 450

Length = 545

>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated

 Score =  120 bits (303), Expect = 2e-29
 Identities = 115/438 (26%), Positives = 169/438 (38%), Gaps = 78/438 (17%)

Query: 31  LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPL----- 85
           L Y  +    E  A RL+A G+  GD VAL      +FV  F A   A     PL     
Sbjct: 50  LPYQTLRARAEAGARRLLALGLKPGDRVALIAETDGDFVEAFFACQYAGLVPVPLPLPMG 109

Query: 86  ---NAAYTPDEFEFYLSDSESKLLLTPAE----GNAAAQAAASKLNISHATATLLDA-DS 137
                +Y   +    L+ ++   ++TP E     N A         +SHA    L   D 
Sbjct: 110 FGGRESYI-AQLRGMLASAQPAAIITPDELLPWVNEATHGNPLLHVLSHAWFKALPEADV 168

Query: 138 ELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNI-KSV 196
            L                    P D+A   ++SG+T  P+GV +T   L A++  I    
Sbjct: 169 ALP----------------RPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDG 212

Query: 197 YKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTF-WQDMIKYNATW 255
            K+   D  V  LP +H  G++  LL+  A   +V       F+     W D+I  N   
Sbjct: 213 LKVRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLPTRDFARRPLQWLDLISRNRGT 272

Query: 256 YTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSC--SASLA-----PVILSRLEEAFGAPV- 307
            +  P     +  R V              SC   A +      P +L +  EAF AP  
Sbjct: 273 ISYSPPFGYELCARRVN----SKDLAELDLSCWRVAGIGADMIRPDVLHQFAEAF-APAG 327

Query: 308 ------LEAYAMTEATHLMSSNPL----------------------PEDGPHKPGSV--- 336
                 + +Y + EAT  +S +PL                      P     +  +    
Sbjct: 328 FDDKAFMPSYGLAEATLAVSFSPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNC 387

Query: 337 GRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIG 395
           G+ + G EI I +E G+P      G +C+RGP++  GY  + E+       GW  TGD+G
Sbjct: 388 GKALPGHEIEIRNEAGMPLPERVVGHICVRGPSLMSGYFRDEESQDVLAADGWLDTGDLG 447

Query: 396 YFDSDGYLHLVGRIKELI 413
           Y   DGYL++ GR K+LI
Sbjct: 448 YL-LDGYLYITGRAKDLI 464

Length = 579

>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase

 Score =  119 bits (300), Expect = 3e-29
 Identities = 118/425 (27%), Positives = 177/425 (41%), Gaps = 49/425 (11%)

Query: 37  HELVERA---ASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDE 93
           HE V+     A+ L+  G+  GDVVA+   N+  ++   LAV  A    APLN  ++ +E
Sbjct: 36  HEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLEWLLAVACAGGIVAPLNYRWSFEE 95

Query: 94  FEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATA----TLLDADSE-----LTLSLA 144
            +  +      +L+T    +    +   +L      +      L++ S      L   L 
Sbjct: 96  AKSAMLLVRPVMLVT----DETCSSWYEELQNDRLPSLMWQVFLESPSSSVFIFLNSFLT 151

Query: 145 HSESDTNAISKLTND----PSDVALFLHTSGTTSRPKGVPLTQNNLAA-SVSNIKSV-YK 198
                  A+     D    P D  L   TSGTT RPKGV ++ + L   S++ I  V Y 
Sbjct: 152 TEMLKQRALGTTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIVGY- 210

Query: 199 LTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTA 258
             E D  +   PL H+ G+ + L         V LP   +F A    Q + ++N T    
Sbjct: 211 -GEDDVYLHTAPLCHIGGLSSALAMLMVGACHVLLP---KFDAKAALQAIKQHNVTSMIT 266

Query: 259 VPTIHQ--IVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVLEAYAMTE 315
           VP +    I L R  +    V+P +R I +   SL+  +L   ++ F  A +  AY MTE
Sbjct: 267 VPAMMADLISLTR-KSMTWKVFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTE 325

Query: 316 A------------THLMSSNPLPEDGPHKPGSVGRPVGQEI---AILDEIGVPQEGGAK- 359
           A            T       L      K  SV +P G  +   A   E+ +  +  ++ 
Sbjct: 326 ACSSLTFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKIGLDESSRV 385

Query: 360 GEVCIRGPNVTKGY-KNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGG- 417
           G +  RGP+V  GY   N E        GW  TGDIG+ D  G L L+GR  + I  GG 
Sbjct: 386 GRILTRGPHVMLGYWGQNSETASVLSNDGWLDTGDIGWIDKAGNLWLIGRSNDRIKTGGE 445

Query: 418 NLHES 422
           N++  
Sbjct: 446 NVYPE 450

Length = 563

>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated

 Score =  119 bits (301), Expect = 3e-29
 Identities = 106/418 (25%), Positives = 168/418 (40%), Gaps = 58/418 (13%)

Query: 31  LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
           ++Y+ ++    R A    A G+  GDVVAL   N  E++  +L + +  A  A LN    
Sbjct: 63  ISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLAAWLGLAKLGAVVALLNTQQR 122

Query: 91  PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISH-----------ATATLLDADSEL 139
                  L+  ++K L+   E   A + A + L                     D  +  
Sbjct: 123 GAVLAHSLNLVDAKHLIVGEELVEAFEEARADLARPPRLWVAGGDTLDDPEGYEDLAAAA 182

Query: 140 TLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKL 199
             +   + +  + ++       D A +++TSGTT  PK   ++      ++     + +L
Sbjct: 183 AGAPTTNPASRSGVT-----AKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLLRL 237

Query: 200 TESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAV 259
           T  D     LPL+H  G      S  AAGA + L    +FSAS FW D+ +Y AT +  +
Sbjct: 238 TPDDVLYCCLPLYHNTGGTVAWSSVLAAGATLAL--RRKFSASRFWDDVRRYRATAFQYI 295

Query: 260 PTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAP-VLEAYAMTEATH 318
             + + +L+    KP     +LR +      L P I    ++ FG P +LE YA +E   
Sbjct: 296 GELCRYLLN-QPPKPTDRDHRLRLM--IGNGLRPDIWDEFQQRFGIPRILEFYAASEGN- 351

Query: 319 LMSSNPLPEDGPHKPGSVGR---PVGQEIAILD---EIGVPQEGG-------AKGEV--C 363
                 +        G+VGR    +    AI+    + G P             GEV   
Sbjct: 352 ---VGFINVFN--FDGTVGRVPLWLAHPYAIVKYDVDTGEPVRDADGRCIKVKPGEVGLL 406

Query: 364 I-----RGPNVTKGYKNNPEANKS-----AFLFG--WFHTGDIGYFDSDGYLHLVGRI 409
           I     RGP    GY  +PEA++       F  G  WF+TGD+   D  G+   V R+
Sbjct: 407 IGRITDRGP--FDGY-TDPEASEKKILRDVFKKGDAWFNTGDLMRDDGFGHAQFVDRL 461

Length = 600

>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase

 Score =  119 bits (301), Expect = 3e-29
 Identities = 114/444 (25%), Positives = 182/444 (40%), Gaps = 76/444 (17%)

Query: 31  LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
           +TY           S LV  GI  G  V L F N  E++I+  A       + PL     
Sbjct: 79  MTYGEAGTARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVDHACSAYSYVSVPLYDTLG 138

Query: 91  PDEFEFYLSDSE-SKLLLTPAEGNAA----AQAAASKLN--ISHATATL--LDADSE--- 138
           PD  +F ++ +E + +   P   N      ++  + +L   +  A   L  L + +    
Sbjct: 139 PDAVKFIVNHAEVAAIFCVPQTLNTLLSCLSEIPSVRLIVVVGGADEPLPSLPSGTGVEI 198

Query: 139 LTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYK 198
           +T S   ++  ++        P DVA   +TSGTT  PKGV LT  NL A+V+      K
Sbjct: 199 VTYSKLLAQGRSSPQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLSTK 258

Query: 199 LTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTF--WQDMIKYNATWY 256
              SD  +  LPL H++  +  ++     G AV     G +         D+     T +
Sbjct: 259 FYPSDVHISYLPLAHIYERVNQIVMLHY-GVAV-----GFYQGDNLKLMDDLAALRPTIF 312

Query: 257 TAVPTIHQIVLDR----------------HVA------------KPEPVYPKL------- 281
            +VP ++  + D                 + A             P P++ +L       
Sbjct: 313 CSVPRLYNRIYDGITNAVKESGGLKERLFNAAYNAKKQALENGKNPSPMWDRLVFNKIKA 372

Query: 282 ------RFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGS 335
                 RF+ S ++ L+P ++  L   FG  VLE Y MTE + ++S     ++G +  G 
Sbjct: 373 KLGGRVRFMSSGASPLSPDVMEFLRICFGGRVLEGYGMTETSCVISGM---DEGDNLSGH 429

Query: 336 VGRPVGQ-EIAILDEIGVPQEGGA-------KGEVCIRGPNVTKGYKNNPEANKSAF-LF 386
           VG P    E+ ++D   VP+           +GE+C+RGP + KGY  +    +      
Sbjct: 430 VGSPNPACEVKLVD---VPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTREVIDED 486

Query: 387 GWFHTGDIGYFDSDGYLHLVGRIK 410
           GW HTGDIG +   G L ++ R K
Sbjct: 487 GWLHTGDIGLWLPGGRLKIIDRKK 510

Length = 651

>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)

 Score =  118 bits (297), Expect = 4e-29
 Identities = 114/411 (27%), Positives = 171/411 (41%), Gaps = 44/411 (10%)

Query: 30  DLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAY 89
            LTYS +   VE  A+RL A G+     VA+  PN+V+ VI  LA+ R  A  A +N   
Sbjct: 28  RLTYSELRARVEGVAARLHARGVRPQQRVAVVAPNSVDAVIALLALHRLGAVPALMNPRL 87

Query: 90  TPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLS----LAH 145
            P E         ++L+     G   A   A    +  A          L L     L  
Sbjct: 88  KPAEI--------AELI---KRGEMTAAVIAVDAQVMDAIFQSGSGVRVLALGDLVGLGE 136

Query: 146 SESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDST 205
            ES    I     +P   A   +TSGTT  PKG  + Q    + V  + +   L      
Sbjct: 137 PESAGPPIEDPPREPEQPAFVFYTSGTTGLPKGAVIPQRAAESRVLFMSTQAGLRHGRHN 196

Query: 206 VIV--LPLFHVHGMLAGLLSSFA-AGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTI 262
           V++  +PL+HV G  A L+++ A  G  V +     F  +   + + +   T   A PT 
Sbjct: 197 VVLGLMPLYHVIGFFAVLVAALALDGTYVVVEE---FDPADALKLIEQERVTSLFATPT- 252

Query: 263 HQIVLDRHVAKPEPVYPKLRFIRSCS---ASLAPVILSRLEEAFGAPVLEAYAMTEATHL 319
           H   LD   A  E    KL  +   +   A++   +L R+ +      +  Y  TEA   
Sbjct: 253 H---LDALAAAAEGAPLKLDSLEHVTFAGATMPDAVLERVNQHLPGEKVNIYGTTEA--- 306

Query: 320 MSS--NPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEG---GAKGEVCIRGPNVT-KG 372
           M+S     P     + G+  RP    E+ I+   G P E    G +GE+ +   + T  G
Sbjct: 307 MNSLYMRDP-----RTGTEMRPGFFSEVRIVRIGGSPDEALPNGEEGELVVAAADATFTG 361

Query: 373 YKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGG-NLHES 422
           Y N P+A       GW+ T D+   D  G + ++GR+ ++I  GG N+H S
Sbjct: 362 YLNQPQATAEKLQDGWYRTSDVAVVDPSGTVRILGRVDDMIISGGENIHPS 412

CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495

>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE)

 Score =  119 bits (300), Expect = 4e-29
 Identities = 112/435 (25%), Positives = 180/435 (41%), Gaps = 65/435 (14%)

Query: 31  LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
            TY+ +++ V R A  L   G+  GD V +  P   E VI  LA  R  A  + +   + 
Sbjct: 74  YTYAELYDEVSRLAGVLRKLGVVKGDRVIIYMPMIPEAVIAMLACARIGAIHSVVFGGFA 133

Query: 91  PDEFEFYLSDSESKLLLTPAEGNAAAQAAASK------LNIS-HATATLLDADSELTL-- 141
             E    + D++ KL++T + G    +    K      L +S H    +L  +       
Sbjct: 134 SKELASRIDDAKPKLIVTASFGIEPGRVVPYKPLLDKALELSQHKPHKVLILNRGQVPAP 193

Query: 142 ----------SLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPL-TQNNLAASV 190
                      L       + +   + DP  +   L+TSGTT +PKGV   T     A  
Sbjct: 194 LKPGRDLDWAELMAKARPVDCVPVESTDPLYI---LYTSGTTGKPKGVVRDTGGYAVALK 250

Query: 191 SNIKSVYKLTE-------SDSTVIVLPLFHVHG-MLAGLLSSFAAGAAVTLPAAGRFSAS 242
            +++++Y +         SD   +V   + V+G +L G  +    G  V  P AG     
Sbjct: 251 WSMRNIYGIKPGDVFWAASDVGWVVGHSYIVYGPLLHGATTVLYEGKPVGTPDAG----- 305

Query: 243 TFWQDMIKYN-ATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSAS----------- 290
            +W+ + +Y     +TA   I  I       + +   P   +I+    S           
Sbjct: 306 AYWRVIEEYGVNALFTAPTAIRAI-------RKQD--PDGEYIKKYDLSSLRALFLAGER 356

Query: 291 LAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLP-EDGPHKPGSVGRPV-GQEIAILD 348
           L    L  +E+  G PV++ +  TE    +++N +  E  P KPGS G+PV G ++ +LD
Sbjct: 357 LDSPTLEWIEKTLGVPVIDHWWQTETGWPITANCVGLELLPIKPGSPGKPVPGYDVQVLD 416

Query: 349 EIGVPQEGGAKGEVCIRGP---NVTKGYKNNPEANKSAFLF---GWFHTGDIGYFDSDGY 402
           E G     G  G + I+ P           + E  K  +L    G++ TGD GY D DGY
Sbjct: 417 ETGEELGPGELGNIVIKLPLPPGCLLTLWGDDERFKKLYLNKFPGYYDTGDSGYKDEDGY 476

Query: 403 LHLVGRIKELINRGG 417
           L ++GR  ++IN  G
Sbjct: 477 LFVMGRTDDVINVAG 491

PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607

>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional

 Score =  118 bits (299), Expect = 4e-29
 Identities = 102/366 (27%), Positives = 148/366 (40%), Gaps = 46/366 (12%)

Query: 64  NTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKL 123
           NT E +    A          LN           +  ++ +LL+T AE           L
Sbjct: 61  NTPEMLFWLAAAALGGYVLVGLNTTRRGAALAADIRRADCQLLVTDAEH--RPLLDGLDL 118

Query: 124 NISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQ 183
                   +LD D+     L  +        ++  D  D  + + TSGTT  PK V  + 
Sbjct: 119 ----PGVRVLDVDTPAYAELVAAAGALTPHREV--DAMDPFMLIFTSGTTGAPKAVRCSH 172

Query: 184 NNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSAST 243
             LA +   +   + LT  D   + +PLFH + ++AG   + A+GAAV LPA  +FSAS 
Sbjct: 173 GRLAFAGRALTERFGLTRDDVCYVSMPLFHSNAVMAGWAPAVASGAAVALPA--KFSASG 230

Query: 244 FWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYP-----KLRFIRSCSASLAPVILSR 298
           F  D+ +Y AT++  V      +L    A PE   P      LR      AS  P  ++ 
Sbjct: 231 FLDDVRRYGATYFNYVGKPLAYIL----ATPE--RPDDADNPLRVAFGNEAS--PRDIAE 282

Query: 299 LEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV----------GQE--IAI 346
               FG  V + Y  +E   ++         P  PGS+GR              E  +A 
Sbjct: 283 FSRRFGCQVEDGYGSSEGAVIVV---REPGTP--PGSIGRGAPGVAIYNPETLTECAVAR 337

Query: 347 LDEIGV---PQEGGAKGE-VCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGY 402
            D  G      E  A GE V   G    +GY NNPEA       G + +GD+ Y D+DG+
Sbjct: 338 FDAHGALLNADE--AIGELVNTAGAGFFEGYYNNPEATAERMRHGMYWSGDLAYRDADGW 395

Query: 403 LHLVGR 408
           ++  GR
Sbjct: 396 IYFAGR 401

Length = 540

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score =  120 bits (302), Expect = 5e-29
 Identities = 110/412 (26%), Positives = 173/412 (41%), Gaps = 41/412 (9%)

Query: 16  QFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAV 75
           Q   + AL V G+  L+Y+ ++    R A  L+AAG+    +V +    ++E V+  LAV
Sbjct: 524 QHPERPAL-VFGEQVLSYAELNRQANRLAHVLIAAGVGPDVLVGIAVERSIEMVVGLLAV 582

Query: 76  IRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDA 135
           ++A     PL+  Y  D   + L DS  +LLLT +   A     A         +  LD 
Sbjct: 583 LKAGGAYVPLDPEYPQDRLAYMLDDSGVRLLLTQSHLLAQLPVPAG------LRSLCLDE 636

Query: 136 DSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKS 195
            ++L    +    +         DP ++A  ++TSG+T +PKGV ++   LA  V  I  
Sbjct: 637 PADLLCGYSGHNPEVAL------DPDNLAYVIYTSGSTGQPKGVAISHGALANYVCVIAE 690

Query: 196 VYKLTESDSTVIVLPL-FHV-HGMLAGLLSSFAAGAAVTL-PAAGRFSASTFWQDMIKYN 252
             +L   DS ++V    F +    L G L   A+GA + L P      A  F   M    
Sbjct: 691 RLQLAADDSMLMVSTFAFDLGVTELFGAL---ASGATLHLLPPDCARDAEAFAALMADQG 747

Query: 253 ATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRL--EEAFGAPVLEA 310
            T    VP+  Q +L    ++     P+   +  C      V L         GA ++  
Sbjct: 748 VTVLKIVPSHLQALLQ--ASRVALPRPQRALV--CGGEALQVDLLARVRALGPGARLINH 803

Query: 311 YAMTEATHLMSSNPLPEDGPHKPGSVGRPVGQEIA-----ILDEIGVPQEGGAKGEVCIR 365
           Y  TE T  +S+  L ++          P+GQ +A     ILD    P   G  GE+ I 
Sbjct: 804 YGPTETTVGVSTYELSDEERDFGNV---PIGQPLANLGLYILDHYLNPVPVGVVGELYIG 860

Query: 366 GPNVTKGYKNNPEANKSAFL---FG-----WFHTGDIGYFDSDGYLHLVGRI 409
           G  + +GY   P      F+   FG      + TGD+  + +DG +  +GR+
Sbjct: 861 GAGLARGYHRRPALTAERFVPDPFGADGGRLYRTGDLARYRADGVIEYLGRM 912

Length = 3956

>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  117 bits (295), Expect = 6e-29
 Identities = 98/393 (24%), Positives = 173/393 (44%), Gaps = 53/393 (13%)

Query: 31  LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
           L+Y ++ + V+  A +L A G+     +AL   N++++VI  LA ++A     P+   ++
Sbjct: 3   LSYQQLWQEVDLLAEQLRALGVK---RIALALDNSIDWVIADLACLQAGIVCIPIPHFFS 59

Query: 91  PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDT 150
             + +  L+D+ + LL++     A+A              T      E            
Sbjct: 60  AQQTQHLLNDAGADLLISDDPDAASALH------------TPFATLGEDLYIA------- 100

Query: 151 NAISKLTND-PSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVL 209
              S    + P+  A   +TSG+T +PKGV L+   L     ++     + E +  + +L
Sbjct: 101 LRPSANPVELPAGTAKITYTSGSTGQPKGVCLSAAALETVAQSLAEAIAILEPERHLCLL 160

Query: 210 PLFHVHGMLAGLLSSFAAGAAVTLPA--------AGRFSASTFWQDMIKYNATWYTAVPT 261
           PL  +   +AG+ +    GA V L          +     + F   + ++       VP 
Sbjct: 161 PLATLLENIAGVYAPLLMGATVILVPLAELGLSGSSGLDPAQFVAALSRWQPHSLILVPQ 220

Query: 262 IHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMS 321
           +   ++      P P    LRF+    A ++P +L R   A G PV E Y ++E   ++S
Sbjct: 221 LLMALVAAVEQGPLPPES-LRFVAVGGARVSPSLLQR-ARALGLPVYEGYGLSECASVVS 278

Query: 322 SNPLPEDGPHKPGSVGRPVGQ-EIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEAN 380
            N  P     +PGSVG+P+   +++I ++          GE+ +RG ++  GY   P A 
Sbjct: 279 LN-TPGA--DRPGSVGKPLPHVQVSIAND----------GEILVRG-SLMLGYLGEPPAT 324

Query: 381 KSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELI 413
                  W+ TGD+G+ D +GYL++ GR K LI
Sbjct: 325 DD-----WWATGDLGHLDEEGYLYINGRKKNLI 352

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448

>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA)

 Score =  116 bits (292), Expect = 3e-28
 Identities = 85/307 (27%), Positives = 124/307 (40%), Gaps = 56/307 (18%)

Query: 153 ISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLF 212
              L + P D+A    +SG+T  PKGV LT  NL  ++  I    ++T  D  +  +PL 
Sbjct: 98  RDSLLSLPDDIAFIQFSSGSTGEPKGVILTHKNLLTNIEAIIEAAEITSEDVFLSWMPLT 157

Query: 213 HVHGMLAGLLSSFAAGAAVTLPAAGRFSASTF------WQDMI-KYNATWYTAVPTI-HQ 264
           H  G++   L+  A G    L          F      W D   ++ AT   + P   ++
Sbjct: 158 HDMGLIGFHLTPTALGINQYL-----MPTRLFIRRPLLWLDKASQHRAT-ILSSPNFGYK 211

Query: 265 IVLDRHVAKPEPVYP-KLRFIR-------SCSASLAPVILSRLEEAFGAP---VLEAYAM 313
            +L     K E +    L  +R         SA L    L ++   FG     +   Y +
Sbjct: 212 YLLKH--FKTEKIIDWDLSSVRLIFNGAEPISADLCEEFLEKMA-PFGLRPNAMYPVYGL 268

Query: 314 TEAT--------------------HLMSSNPLPEDGPHKPGS-----VGRPVGQ-EIAIL 347
            EAT                    HL     + E  P    +     VG P+   EI I+
Sbjct: 269 AEATLAVSFPKPGEPFKTVCLDRNHLKVGVKIIEIDPKNSDAISFVEVGSPIDGCEIRIV 328

Query: 348 DEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF-GWFHTGDIGYFDSDGYLHLV 406
           D+ G        G + I+G NVT GY NNPEA K +    GW  TGD+G+   +G L + 
Sbjct: 329 DDAGEVLPDRTIGHIQIKGDNVTSGYYNNPEATKKSITPDGWLKTGDLGFLR-NGRLVIT 387

Query: 407 GRIKELI 413
           GR K++I
Sbjct: 388 GRAKDII 394

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499

>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional

 Score =  116 bits (291), Expect = 4e-28
 Identities = 111/438 (25%), Positives = 187/438 (42%), Gaps = 47/438 (10%)

Query: 21  RALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARA 80
           R   + GK   T+ + ++   R A+ L++  I   DVV++  PNT     M  AV  A A
Sbjct: 30  RTSIIYGKTRFTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNTPAMYEMHFAVPMAGA 89

Query: 81  TAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATL---LDADS 137
              P+N           L  ++ K+L         A+     L+   +   L      + 
Sbjct: 90  VLNPINTRLDATSIAAILRHAKPKILFVDRSFEPLAREVLHLLSSEDSNLNLPVIFIHEI 149

Query: 138 ELTLSLAHSESDTNA-ISKLTNDPSDVA-LFL-----------HTSGTTSRPKGVPLTQN 184
           +     +  E D    I +    PS VA +F            +TSGTT+ PKGV ++  
Sbjct: 150 DFPKRPSSEELDYECLIQRGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHR 209

Query: 185 NLAASVSNIKSV--YKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSAS 242
              A +S + ++  +++      +  LP+FH +G      ++   G +V +      +A 
Sbjct: 210 --GAYLSTLSAIIGWEMGTCPVYLWTLPMFHCNGWTFTWGTAARGGTSVCMR---HVTAP 264

Query: 243 TFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEA 302
             ++++  +N T    VPT+  I+L  +     P    +  +   S    P  L +  + 
Sbjct: 265 EIYKNIEMHNVTHMCCVPTVFNILLKGNSLDLSPRSGPVHVLTGGSPP--PAALVKKVQR 322

Query: 303 FGAPVLEAYAMTEATHLM-------SSNPLPEDGPHKPGSVGRPVGQEIAILDEI----- 350
            G  V+ AY +TEAT  +         N LPE   ++   +    G  I  L ++     
Sbjct: 323 LGFQVMHAYGLTEATGPVLFCEWQDEWNRLPE---NQQMELKARQGVSILGLADVDVKNK 379

Query: 351 ----GVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLV 406
                VP++G   GE+ I+G ++ KGY  NP+A   AF  GW +TGD+G    DG++ + 
Sbjct: 380 ETQESVPRDGKTMGEIVIKGSSIMKGYLKNPKATSEAFKHGWLNTGDVGVIHPDGHVEIK 439

Query: 407 GRIKELINRGGNLHESIS 424
            R K++I  GG   E+IS
Sbjct: 440 DRSKDIIISGG---ENIS 454

Length = 579

>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional

 Score =  115 bits (289), Expect = 7e-28
 Identities = 110/417 (26%), Positives = 189/417 (45%), Gaps = 32/417 (7%)

Query: 32  TYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTP 91
           TY++IH+   + +  L   GI  GD VA    NT   +  +  ++   A    +N    P
Sbjct: 41  TYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYGIMGIGAICHTVNPRLFP 100

Query: 92  DEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDAD----SELTLSLAH-- 145
           ++  + ++ +E ++++T        +  A KL        L DA     + L  ++A+  
Sbjct: 101 EQIAWIINHAEDRVVITDLTFVPILEKIADKLPSVERYVVLTDAAHMPQTTLKNAVAYEE 160

Query: 146 --SESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQ--NNLAASVSNIKSVYKLTE 201
             +E+D +   K T D +  A   +TSGTT  PKGV  +   N L A ++N       + 
Sbjct: 161 WIAEADGDFAWK-TFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDALGTSA 219

Query: 202 SDSTVIVLPLFHVHGMLAGL-LSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVP 260
           +D+ + V+PLFH +    G+  S+ + G  + +P A +   ++ ++ +     T+   VP
Sbjct: 220 ADTMLPVVPLFHANSW--GIAFSAPSMGTKLVMPGA-KLDGASVYELLDTEKVTFTAGVP 276

Query: 261 TIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLM 320
           T+  ++L +++ K     P L+ +  C  S  P  + +  E  G  V  A+ MTE + L 
Sbjct: 277 TVWLMLL-QYMEKEGLKLPHLKMV-VCGGSAMPRSMIKAFEDMGVEVRHAWGMTEMSPLG 334

Query: 321 SSNPLPEDGPHKPGSV--------GR-PVGQEIAILDEIG--VPQEGGAKGEVCIRGPNV 369
           +   L       PG          G  P G E+ I D+ G  +P +G   G + +RGP V
Sbjct: 335 TLAALKPPFSKLPGDARLDVLQKQGYPPFGVEMKITDDAGKELPWDGKTFGRLKVRGPAV 394

Query: 370 TKGY-KNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISL 425
              Y + + E        G+F TGD+   D+ GY+ +  R K++I  GG    SI L
Sbjct: 395 AAAYYRVDGEILDDD---GFFDTGDVATIDAYGYMRITDRSKDVIKSGGEWISSIDL 448

Length = 542

>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional

 Score =  115 bits (289), Expect = 9e-28
 Identities = 112/443 (25%), Positives = 180/443 (40%), Gaps = 56/443 (12%)

Query: 16  QFSSKRALSVSGKFDLTYSRIHELVERAASRLVA-AGINAGDVVALTFPNTVEFVIMFLA 74
           +F+ + A S  G   L+Y+ +       A+ L     +  GD +A+  PN +++ I    
Sbjct: 36  KFADRPAFSNLGV-TLSYAELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAVFG 94

Query: 75  VIRARATAAPLNAAYTPDEFEFYLSDSESKLL---------------------------- 106
            +RA       N  YT  E      DS ++ L                            
Sbjct: 95  ALRAGLIVVNTNPLYTAREMRHQFKDSGARALVYLNMFGKLVQEVLPDTGIEYLIEAKMG 154

Query: 107 -LTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVAL 165
            L PA           K+        L  A   +    A  +    ++  +     D+A+
Sbjct: 155 DLLPAAKGWLVNTVVDKVKKMVPAYHLPQA---VPFKQALRQGRGLSLKPVPVGLDDIAV 211

Query: 166 FLHTSGTTSRPKGVPLTQNNLAASVSNIKSVY-----------KLTESDSTVIV--LPLF 212
             +T GTT   KG  LT  NL   V+N+  V             L +    V++  LPL+
Sbjct: 212 LQYTGGTTGLAKGAMLTHGNL---VANMLQVRACLSQLGPDGQPLMKEGQEVMIAPLPLY 268

Query: 213 HVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVA 272
           H++   A  +    +G    L    R     F +++ K+  +    + T+   ++D H  
Sbjct: 269 HIYAFTANCMCMMVSGNHNVLITNPR-DIPGFIKELGKWRFSALLGLNTLFVALMD-HPG 326

Query: 273 KPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHK 332
             +  +  L+   S   +L      R E+  G  ++E Y +TE + + S+NP  E    +
Sbjct: 327 FKDLDFSALKLTNSGGTALVKATAERWEQLTGCTIVEGYGLTETSPVASTNPYGELA--R 384

Query: 333 PGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAF-LFGWFH 390
            G+VG PV G  + ++D+ G     G +GE+CI+GP V KGY   PEA   A    GWF 
Sbjct: 385 LGTVGIPVPGTALKVIDDDGNELPLGERGELCIKGPQVMKGYWQQPEATAEALDAEGWFK 444

Query: 391 TGDIGYFDSDGYLHLVGRIKELI 413
           TGDI   D DG++ +V R K+LI
Sbjct: 445 TGDIAVIDPDGFVRIVDRKKDLI 467

Length = 562

>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score =  113 bits (285), Expect = 1e-27
 Identities = 102/391 (26%), Positives = 156/391 (39%), Gaps = 65/391 (16%)

Query: 31  LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
            +Y+++ +   R A+ L   G+  GD V L  PN  E     LA I+  A   P     T
Sbjct: 1   YSYAQLSKRSNRVANFLRKHGVRRGDRVLLMLPNVPELWEAMLAAIKLGAVVIPATTLLT 60

Query: 91  PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDT 150
           P +     S            G   A  A                               
Sbjct: 61  PADLRDRFSR-----------GKPKAIVADE----------------------------- 80

Query: 151 NAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVY--KLTESDSTV-I 207
                      D  L   TSGTT  PK V  T  +    V ++ ++Y   L   D  + I
Sbjct: 81  -------TRADDPILLYFTSGTTGLPKLVLHTHVSYP--VGHLSTMYWIGLQPGDIHLNI 131

Query: 208 VLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVL 267
             P +  H   +   + + AGA V      RF A  +   + K+  T + A PT+ ++ +
Sbjct: 132 SSPGWAKHAW-SSFFAPWNAGATVFGINYPRFDARRYLGALEKFGVTTFCAPPTVWRMFI 190

Query: 268 DRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPE 327
            + +A+      +LR   S    L P ++ R+++A+G  + + Y  TE T  M  N  P 
Sbjct: 191 QQDLAQ---YDVRLREAVSAGEPLNPEVIERVKKAWGLTIRDGYGQTETT-AMIGNS-PG 245

Query: 328 DGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCI----RGPNVTKGYKNNPEANKS 382
               KPGS+GRP+ G  + +LD+ G       +GE+ +    R   +  GY  +PE   +
Sbjct: 246 Q-KVKPGSMGRPLPGYRVVLLDDEGKEI-PVTEGEIALDLGDRPIGLMLGYMGDPEKTAA 303

Query: 383 AFLFGWFHTGDIGYFDSDGYLHLVGRIKELI 413
           AF  G++ TGD  Y D DGYL  VGR  ++ 
Sbjct: 304 AFRGGYYRTGDKAYRDEDGYLWFVGRADDVF 334

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433

>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  112 bits (281), Expect = 5e-27
 Identities = 96/410 (23%), Positives = 146/410 (35%), Gaps = 75/410 (18%)

Query: 31  LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
           LT+  + E  +R A  L A+GI  GD V L  P   +   +  A+ +  A    ++    
Sbjct: 3   LTFRELDERSDRIARGLRASGIRKGDRVVLMVPPGADLTALTFALFKVGAVPVLIDPGMG 62

Query: 91  PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDT 150
                                G    +A                 D+ + +  A      
Sbjct: 63  RKHL-----------------GRCLEEAEP---------------DAFIGIPKA------ 84

Query: 151 NAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLP 210
                      D A  L TSG+T  PKGV  T    AA +  ++S+Y + E D  +   P
Sbjct: 85  ----------DDPAAILFTSGSTGPPKGVVYTHRTFAAQIDALRSLYGIREGDRDLAAFP 134

Query: 211 LFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRH 270
            F + G   G+ +      A+   A      +   Q + +  A+     P + + V  R+
Sbjct: 135 PFALFGPALGVTT---VIPAMDPTAPAALDPAKLAQAIREIGASCVFGSPALLKNVA-RY 190

Query: 271 VAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF--GAPVLEAYAMTEA---THLMSSNPL 325
             +     P LR + S  A + P +L R        A +   Y  TEA     +     L
Sbjct: 191 CEENGIQLPSLRRVLSAGAPVPPDLLRRFVANLMPEAEIHTPYGATEALPVASIEGREVL 250

Query: 326 PED----GPHKPGSVGRPV-GQEIAI--LDEIGVPQEGGAK-------GEVCIRGPNVTK 371
            E            VG PV G ++ I  +D+  +              GE+ + GP+VT+
Sbjct: 251 AESAEPPEAGAGVCVGHPVPGIDVRIIPIDDGPIASWDDDIELPPGEVGEIIVSGPHVTR 310

Query: 372 GYKNNPEANKSAFLF----GWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
            Y N PEA K A +      W   GD+GYFD  G L   GR    +   G
Sbjct: 311 EYYNRPEATKLAKISDGNRIWHRMGDLGYFDDQGRLWFCGRKAHRVETAG 360

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score =  113 bits (284), Expect = 1e-26
 Identities = 96/423 (22%), Positives = 166/423 (39%), Gaps = 45/423 (10%)

Query: 9    LLNQVIDQFSSKRALSVSGKFD---LTYSRIHELVERAASRLVAAGINAGDVVALTFPNT 65
             ++Q++ + +     +V+  FD   LTY+ ++    R A  L+A G+    +V +    +
Sbjct: 4552 CVHQLVAERARMTPDAVAVVFDEEKLTYAELNRRANRLAHALIARGVGPEVLVGIAMERS 4611

Query: 66   VEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNI 125
             E ++  LAV++A     PL+  Y  +   + + DS + LLLT                 
Sbjct: 4612 AEMMVGLLAVLKAGGAYVPLDPEYPRERLAYMMEDSGAALLLTQ---------------- 4655

Query: 126  SHATATLLDADSELTLSLAHSE-----SDTNAISKLTNDPSDVALFLHTSGTTSRPKGVP 180
            SH    L   D   +L+L   E        +   +L   P ++A  ++TSG+T RPKGV 
Sbjct: 4656 SHLLQRLPIPDGLASLALDRDEDWEGFPAHDPAVRL--HPDNLAYVIYTSGSTGRPKGVA 4713

Query: 181  LTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFS 240
            ++  +L   +      Y+LT  D  V+    F   G   GL      GA+V +     + 
Sbjct: 4714 VSHGSLVNHLHATGERYELTPDDR-VLQFMSFSFDGSHEGLYHPLINGASVVIRDDSLWD 4772

Query: 241  ASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSR-L 299
                + ++ ++  T     P   Q + +      EP  P LR       ++A        
Sbjct: 4773 PERLYAEIHEHRVTVLVFPPVYLQQLAEHAERDGEP--PSLRVYCFGGEAVAQASYDLAW 4830

Query: 300  EEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPVGQEIA-----ILDEIGVPQ 354
                   +   Y  TE T  +      +      G+   P+G  +      +LD    P 
Sbjct: 4831 RALKPVYLFNGYGPTETTVTVLLWKARDGDA--CGAAYMPIGTPLGNRSGYVLDGQLNPL 4888

Query: 355  EGGAKGEVCIRGPNVTKGYKNNPEANKSAFL---FG-----WFHTGDIGYFDSDGYLHLV 406
              G  GE+ + G  V +GY   P      F+   FG      + TGD+  + +DG +  +
Sbjct: 4889 PVGVAGELYLGGEGVARGYLERPALTAERFVPDPFGAPGGRLYRTGDLARYRADGVIDYL 4948

Query: 407  GRI 409
            GR+
Sbjct: 4949 GRV 4951

Length = 5163

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score =  110 bits (278), Expect = 1e-26
 Identities = 96/398 (24%), Positives = 153/398 (38%), Gaps = 75/398 (18%)

Query: 25  VSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAP 84
                 L+Y+ + E   + A+RL A G+  GD V +    + + V   LA+++A A   P
Sbjct: 7   RDDDRTLSYAELDERSNQLAARLRALGVGPGDRVGVLLERSADLVAALLAILKAGAAYVP 66

Query: 85  LNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLA 144
           L+ +Y  +  ++ L D+E  LLLT                                    
Sbjct: 67  LDPSYPAERLQYMLEDAEPALLLT------------------------------------ 90

Query: 145 HSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDS 204
                         DP D+A  ++TSG+T +PKGV ++   L   + ++     L  SD 
Sbjct: 91  --------------DPDDLAYVIYTSGSTGKPKGVEVSHRALVNFLLSMARRPGLGASDR 136

Query: 205 TVIVLPL-FHVHG--MLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIK-YNATWYTAVP 260
            + V  + F +    +L  LLS    GA V + +A           +I     T   A P
Sbjct: 137 LLAVTTISFDISVLELLLPLLS----GATVVIASAETVRDPERLARLIADERITIMQATP 192

Query: 261 TIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLM 320
              +++L       E     L  +  C     P  L+    + GA +   Y  TE T   
Sbjct: 193 ATWRMLLAAGWRGRES----LTAL--CGGEALPRDLAERLLSTGAELWNMYGPTETTIWS 246

Query: 321 SSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEA 379
           +   +       P ++GRP+   ++ +LDE   P   G  GE+ I G  V +GY   PE 
Sbjct: 247 TCARV--TAADGPVTIGRPIANTQVYVLDEDLQPVPPGVPGELYIGGDGVARGYLGRPEL 304

Query: 380 NKSAFL---FG-----WFHTGDIGYFDSDGYLHLVGRI 409
               F+   F       + TGD+  +  DG L  +GR 
Sbjct: 305 TAERFVPDPFDDPGGRLYRTGDLVRWRPDGRLEYLGRA 342

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated

 Score =  109 bits (275), Expect = 6e-26
 Identities = 115/440 (26%), Positives = 170/440 (38%), Gaps = 73/440 (16%)

Query: 32  TYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTP 91
           T+  +HE   R A  L AAG+  GD VA+     VE       +       A L   + P
Sbjct: 31  TWGEVHERARRIAGGLAAAGVGPGDAVAVLAGAPVEIAPTAQGLWMR---GASLTMLHQP 87

Query: 92  ----------DEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTL 141
                     ++    +    +K ++      AAA     K       A LL AD     
Sbjct: 88  TPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLAAAPVLEEKGIRVLTVADLLAAD----- 142

Query: 142 SLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLT- 200
                      I  +     D+AL   TSG+T  PK V +T  NL A+   +    +   
Sbjct: 143 ----------PIDPVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAAEFDV 192

Query: 201 ESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTF-WQDMI-KYNATWYTA 258
           E+D  V  LPLFH  GM+  L      GA +       F      W ++I KY  T  TA
Sbjct: 193 ETDVMVSWLPLFHDMGMVGFLTVPMYFGAELVKVTPMDFLRDPLLWAELISKYRGT-MTA 251

Query: 259 VPTIHQIVLDRHVAKPEPVY----PKLRFIRSCSASLAPVILSRLEEAFGAP-------V 307
            P     +L R + +           LRF  + +  + P  +  L +A GA        +
Sbjct: 252 APNFAYALLARRLRRQAKPGAFDLSSLRFALNGAEPIDPADVEDLLDA-GARFGLRPEAI 310

Query: 308 LEAYAMTEATHLMSSNPLPE----DGPH--------------KPG-----SVGRPV-GQE 343
           L AY M EAT  +S +P       D                 K       ++G P+ G E
Sbjct: 311 LPAYGMAEATLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPGLE 370

Query: 344 IAILDEIGVPQEGGAKGEVCIRGPNVTKGYK--NNPEANKSAFLFGWFHTGDIGYFDSDG 401
           + ++DE G        G + +RG +VT GY   +     + A   GW  TGD+GY   +G
Sbjct: 371 VRVVDEDGQVLPPRGVGVIELRGESVTPGYLTMDGFIPAQDA--DGWLDTGDLGYLTEEG 428

Query: 402 YLHLVGRIKELINRGG-NLH 420
            + + GR+K++I   G N++
Sbjct: 429 EVVVCGRVKDVIIMAGRNIY 448

Length = 545

>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS)

 Score =  106 bits (268), Expect = 5e-25
 Identities = 102/402 (25%), Positives = 158/402 (39%), Gaps = 57/402 (14%)

Query: 31  LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
           +TY+     V   A  L+  G++A   + +   N++E  ++ LA + A    AP++ AY+
Sbjct: 26  VTYAEALRQVRAIAQALLDLGLSAERPLMILSGNSIEHALLALAAMYAGVPVAPVSPAYS 85

Query: 91  PDEFEFYLSDSESKL-----LLTPA-----EGN--AAAQAAASKLNISHATATLLDADSE 138
                  LS   +KL     LLTP      +G   A A AA     +             
Sbjct: 86  ------LLSKDFAKLRHIFDLLTPGAVFAEDGAAFARALAALGLAGVPVVAVRGAPGGPA 139

Query: 139 LTLS--LAHSESDT--NAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIK 194
           +  +  LA   +     A + +   P  VA +L TSG+T  PK V  T   L A+ + I 
Sbjct: 140 IAFAALLATPPTAAVDAAFAAVG--PDTVAKYLFTSGSTGLPKAVINTHRMLCANQAMIA 197

Query: 195 SVYKLTESDSTVIV--LPLFHVHGMLAGLLSSFAAGAAVTL----PAAGRFSASTFWQDM 248
             +     +  V+V  LP  H  G           G  + +    P  G F   T  +++
Sbjct: 198 QCWPFLTEEPPVLVDWLPWNHTFGGNHNFNMVLYNGGTLYIDDGKPVPGLF-EETL-RNL 255

Query: 249 IKYNATWYTAVPTIHQI---VLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLE----E 301
            + + T Y  VP   ++    L+R  A     + +LR +    A+L   +  RL+     
Sbjct: 256 REVSPTVYFNVPKGFEMLVDALERDAALRRRFFKRLRLLFYAGAALPQDVWDRLQALAVR 315

Query: 302 AFGAPVL--EAYAMTEA--THLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEG 356
             G  +        TE   T      P       + G +G P  G E+ +     VP  G
Sbjct: 316 TTGERIPMTSGLGATETAPTATFVHWPTD-----RSGVIGLPAPGTELKL-----VPNGG 365

Query: 357 GAKGEVCIRGPNVTKGYKNNPEANKSAF-LFGWFHTGDIGYF 397
             K EV ++GPNVT GY  +PE    AF   G++  GD   F
Sbjct: 366 --KLEVRVKGPNVTPGYWRDPELTAEAFDEEGFYRIGDAVRF 405

Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score =  107 bits (268), Expect = 1e-24
 Identities = 104/411 (25%), Positives = 163/411 (39%), Gaps = 54/411 (13%)

Query: 25   VSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAP 84
            V G+ +LTY  ++    R A RL+A G+    +V +    ++E V+  LA+++A     P
Sbjct: 1594 VFGEQELTYGELNRRANRLAHRLIALGVGPEVLVGIAVERSLEMVVGLLAILKAGGAYVP 1653

Query: 85   LNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQA---AASKLNISHATATLLDADSELTL 141
            L+  Y  +   + + DS  +LLLT     +  QA       L        +LD + +   
Sbjct: 1654 LDPEYPRERLAYMIEDSGIELLLT----QSHLQARLPLPDGLRS-----LVLDQEDDWL- 1703

Query: 142  SLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTE 201
                  SD+N    L   P ++A  ++TSG+T RPKG       L   +   +  Y+L+ 
Sbjct: 1704 ---EGYSDSNPAVNL--APQNLAYVIYTSGSTGRPKGAGNRHGALVNRLCATQEAYQLSA 1758

Query: 202  SDSTVIVLPL---FHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTA 258
            +D  +          V  +   L++   A   +  P A R       Q + +   T    
Sbjct: 1759 ADVVLQFTSFAFDVSVWELFWPLIN--GARLVIAPPGAHR-DPEQLIQLIERQQVTTLHF 1815

Query: 259  VPTIHQ--IVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVL-EAYAMTE 315
            VP++ Q  + +D  V  P      LR +     +L    L    E      L   Y  TE
Sbjct: 1816 VPSMLQQLLQMDEQVEHP----LSLRRVVCGGEALEVEALRPWLERLPDTGLFNLYGPTE 1871

Query: 316  A----THLMSSNPLPEDGPHKPGSVGRPVGQEIA-----ILDEIGVPQEGGAKGEVCIRG 366
                 TH        E      G    P+GQ IA     ILD    P   G  GE+ + G
Sbjct: 1872 TAVDVTHWTCRRKDLE------GRDSVPIGQPIANLSTYILDASLNPVPIGVAGELYLGG 1925

Query: 367  PNVTKGYKNNPEANKSAFL---FG-----WFHTGDIGYFDSDGYLHLVGRI 409
              + +GY N P      F+   FG      + TGD+  + +DG +  +GRI
Sbjct: 1926 VGLARGYLNRPALTAERFVADPFGTVGSRLYRTGDLARYRADGVIEYLGRI 1976

Length = 3956

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score =  107 bits (268), Expect = 1e-24
 Identities = 91/393 (23%), Positives = 159/393 (40%), Gaps = 35/393 (8%)

Query: 27   GKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLN 86
            G+  L+Y+ ++    R A RL+  G+    +V +    ++E V+  LA+++A     PL+
Sbjct: 3079 GEQRLSYAELNRRANRLAHRLIERGVGPDVLVGVAVERSLEMVVGLLAILKAGGAYVPLD 3138

Query: 87   AAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHS 146
              Y  +   + L DS ++LLL+ +            L         LD   E   + A+ 
Sbjct: 3139 PEYPEERLAYMLEDSGAQLLLSQSHLRLPLAQGVQVL--------DLDRGDE-NYAEANP 3189

Query: 147  ESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTV 206
               T         P ++A  ++TSG+T +PKGV +  + L+  +  ++  Y L   D  V
Sbjct: 3190 AIRT--------MPENLAYVIYTSGSTGKPKGVGIRHSALSNHLCWMQQAYGLGVGD-RV 3240

Query: 207  IVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMI-KYNATWYTAVPTIHQI 265
            +    F     +  L     +GA V L     +       ++I         A P++ Q 
Sbjct: 3241 LQFTTFSFDVFVEELFWPLMSGARVVLAGPEDWRDPALLVELINSEGVDVLHAYPSMLQA 3300

Query: 266  VLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVLEAYAMTEATHLMSSNP 324
             L+      E    +   ++        +     ++ F G P+   Y  TEAT  ++   
Sbjct: 3301 FLE------EEDAHRCTSLKRIVCGGEALPADLQQQVFAGLPLYNLYGPTEATITVTHWQ 3354

Query: 325  LPEDGPHKPGSVGRPVGQ-EIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSA 383
              E+G      +GRP+      ILD    P   GA GE+ + G  + +GY N P      
Sbjct: 3355 CVEEGKDAV-PIGRPIANRACYILDGSLEPVPVGALGELYLGGEGLARGYHNRPGLTAER 3413

Query: 384  FLFGWF-------HTGDIGYFDSDGYLHLVGRI 409
            F+   F        TGD+  + +DG +  +GR+
Sbjct: 3414 FVPDPFVPGERLYRTGDLARYRADGVIEYIGRV 3446

Length = 5163

>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae

 Score =  103 bits (260), Expect = 3e-24
 Identities = 103/402 (25%), Positives = 153/402 (38%), Gaps = 84/402 (20%)

Query: 25  VSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAP 84
           V G   LTY+ ++    R A+RL AAG+     V +    + + V+  LAV++A A   P
Sbjct: 19  VCGDESLTYAELNRRANRLAARLRAAGVGPESRVGVCLRRSPDLVVALLAVLKAGAAYVP 78

Query: 85  LNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLA 144
           L+ AY P+   + L D+ ++L+LT                                    
Sbjct: 79  LDPAYPPERLAYILEDAGARLVLT------------------------------------ 102

Query: 145 HSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTE--- 201
                         DP D+A  ++TSG+T RPKGV +   N AA +    +V+   E   
Sbjct: 103 --------------DPDDLAYVIYTSGSTGRPKGVAIEHRNAAALLQWAAAVFSAEELAG 148

Query: 202 ---SDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTA 258
              + S    L +F +   L+       A  A+ LP               K   T    
Sbjct: 149 VLAATSICFDLSVFEIFVPLSTGGRVVLADNALALPD-----------LPAKAEVTLINT 197

Query: 259 VPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRL-EEAFGAPVLEAYAMTEAT 317
           VP+  + +L RH A P      +R +      L   ++ RL        V   Y  +E T
Sbjct: 198 VPSAARELL-RHDALP----SSVRTVNLAGEPLPQELVQRLYALPQVERVYNLYGPSEDT 252

Query: 318 HLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNN 376
              +   +       P S+GRP+ G +  +LD    P   G  GE+ I G  V +GY   
Sbjct: 253 TYSTYAEVEPGASRTP-SIGRPLAGTQAYVLDAHLQPVPVGVPGELYIGGAGVARGYLGR 311

Query: 377 PEANKSAFLFGWFH---------TGDIGYFDSDGYLHLVGRI 409
           PE     FL   F          TGD+    +DG L  +GRI
Sbjct: 312 PELTAERFLPNPFAGSPGERLYRTGDLVRRRADGQLEYLGRI 353

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449

>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated

 Score =  103 bits (259), Expect = 7e-24
 Identities = 104/417 (24%), Positives = 178/417 (42%), Gaps = 33/417 (7%)

Query: 32  TYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTP 91
           TY       ++ A  L A G+  GD V     N    +  +  V  + A    +N    P
Sbjct: 41  TYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGVSGSGAVCHTINPRLFP 100

Query: 92  DEFEFYLSDSESKLLL-----TPAEGNAAAQAAASKLNISHATATLLDADSELTLS---L 143
           ++  + ++ +E + +L      P     A Q    K  ++   A  L A S   L    L
Sbjct: 101 EQIAYIVNHAEDRYVLFDLTFLPLVDALAPQCPNVKGWVAMTDAAHLPAGSTPLLCYETL 160

Query: 144 AHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNN--LAASVSNIKSVYKLTE 201
             ++       +   D +  +   +TSGTT  PKG   +  +  L A  + +     L+ 
Sbjct: 161 VGAQDGDYDWPRF--DENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAMGLSA 218

Query: 202 SDSTVIVLPLFHVHGMLAGLLSSFA-AGAAVTLPAAGRFSASTFWQDMIKYNATWYTA-V 259
            D+ + V+P+FHV+    GL  S    GA + LP       S +  ++I+     ++A V
Sbjct: 219 RDAVLPVVPMFHVNAW--GLPYSAPLTGAKLVLPGPDLDGKSLY--ELIEAERVTFSAGV 274

Query: 260 PTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTE---- 315
           PT+   +L+ H+ +    +  LR      ++  P ++   E+ +G  V+ A+ MTE    
Sbjct: 275 PTVWLGLLN-HMREAGLRFSTLRRTVIGGSACPPAMIRTFEDEYGVEVIHAWGMTEMSPL 333

Query: 316 ---ATHLMSSNPLPEDGPHK-PGSVGRPV-GQEIAILDEIG--VPQEGGAKGEVCIRGPN 368
                     + LP D   K     GR + G ++ I+ + G  +P +G A G++ +RGP 
Sbjct: 334 GTLCKLKWKHSQLPLDEQRKLLEKQGRVIYGVDMKIVGDDGRELPWDGKAFGDLQVRGPW 393

Query: 369 VTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISL 425
           V   Y        S  + GWF TGD+   D+DG++ +  R K++I  GG    SI +
Sbjct: 394 VIDRYFRGDA---SPLVDGWFPTGDVATIDADGFMQITDRSKDVIKSGGEWISSIDI 447

Length = 539

>gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional

 Score =  103 bits (257), Expect = 7e-24
 Identities = 114/400 (28%), Positives = 177/400 (44%), Gaps = 28/400 (7%)

Query: 31  LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
           ++Y ++ +     A  L  AG+  GDVVAL   N+ E +++  A +R+      +N   T
Sbjct: 25  VSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGLYITAINHHLT 84

Query: 91  PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDT 150
             E ++ + DS +++L+  A  +  A    + L +  +    +D       +LA      
Sbjct: 85  APEADYIVGDSGARVLVASAALDGLAAKVGADLPLRLSFGGEIDGFGSFEAALA------ 138

Query: 151 NAISKLTNDPSDVALFLHTSGTTSRPKGV--PLTQNNLAAS----VSNIKSVYKLTESDS 204
            A  +LT  P   A+ L++SGTT  PKG+   L   ++ A     V+  ++ Y ++ESD 
Sbjct: 139 GAGPRLTEQPCG-AVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFYDISESDI 197

Query: 205 TVIVLPLFHVHGM-LAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPT-- 261
                P++H   +    ++   A G  V L  A RF A      + +Y  T    VPT  
Sbjct: 198 YYSSAPIYHAAPLRWCSMVH--ALGGTVVL--AKRFDAQATLGHVERYRITVTQMVPTMF 253

Query: 262 IHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMS 321
           +  + LD  V     V   LR +   +A     +   + +  G  V E Y+ TEA H M+
Sbjct: 254 VRLLKLDADVRTRYDV-SSLRAVIHAAAPCPVDVKHAMIDWLGPIVYEYYSSTEA-HGMT 311

Query: 322 SNPLPEDGPHKPGSVGRPVGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPE--- 378
               P+   H PGSVGR V  ++ I D+ G     G  G V      +   Y N+PE   
Sbjct: 312 FIDSPDWLAH-PGSVGRSVLGDLHICDDDGNELPAGRIGTVYFERDRLPFRYLNDPEKTA 370

Query: 379 -ANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
            A   A  F W   GD+G  D DGYL+L  R   +I  GG
Sbjct: 371 AAQHPAHPF-WTTVGDLGSVDEDGYLYLADRKSFMIISGG 409

Length = 501

>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional

 Score =  102 bits (256), Expect = 1e-23
 Identities = 106/404 (26%), Positives = 168/404 (41%), Gaps = 33/404 (8%)

Query: 31  LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
           +TY  + E   R A    + G+  GD VA+   N + ++ +  A  R+      +N+  T
Sbjct: 25  VTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVNSHLT 84

Query: 91  PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKL-NISHATATLLDADSELTLSLAHSESD 149
           P E  + + DS ++ L+T A     A+A   +   + H      D + E  +  A     
Sbjct: 85  PAEAAYIVDDSGARALITSAAKLDVARALLKQCPGVRHRLVLDGDGELEGFVGYA----- 139

Query: 150 TNAISKLTNDP----SDVALFLHTSGTTSRPKGV--PLTQNNLAASVSNIKSVYKLTESD 203
             A++ L   P    S     L++SGTT RPKG+  PL +      +     + +L    
Sbjct: 140 -EAVAGLPATPIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLWGFR 198

Query: 204 STVIVL---PLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVP 260
           S ++ L   PL+H     A +L     G  + +     F A  +   + +Y  T    VP
Sbjct: 199 SDMVYLSPAPLYHSAPQRAVMLVIRLGGTVIVME---HFDAEQYLALIEEYGVTHTQLVP 255

Query: 261 TIHQIVLDRHVAKPEPVYPK-----LRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTE 315
           T+      R +  PE V  K     L      +A   P +  ++ + +G  + E YA TE
Sbjct: 256 TM----FSRMLKLPEEVRDKYDLSSLEVAIHAAAPCPPQVKEQMIDWWGPIIHEYYAATE 311

Query: 316 ATHLMSSNPLPEDGPHKPGSVGRPVGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKN 375
                + +   E+    PG+VGR +  ++ ILD+ G     G  G +   G    + Y N
Sbjct: 312 GLGFTACD--SEEWLAHPGTVGRAMFGDLHILDDDGAELPPGEPGTIWFEGGRPFE-YLN 368

Query: 376 NPEANKSAFL--FGWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
           +P     A      W   GDIGY D DGYL+L  R   +I  GG
Sbjct: 369 DPAKTAEARHPDGTWSTVGDIGYVDEDGYLYLTDRAAFMIISGG 412

Length = 511

>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase

 Score =  102 bits (255), Expect = 2e-23
 Identities = 116/446 (26%), Positives = 177/446 (39%), Gaps = 59/446 (13%)

Query: 21  RALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARA 80
           R   V G    T+++ ++   R AS L    I  G  VA+  PN          V  A A
Sbjct: 36  RKSVVHGSVRYTWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIPAMYEAHFGVPMAGA 95

Query: 81  TAAPLNAAYTPDEFEFYLSDSESKLLL------TPAEGNAAAQAAASKLNISHATATLLD 134
               +N         F L  S+S++++      T AE      A   K +       ++ 
Sbjct: 96  VVNCVNIRLNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIG 155

Query: 135 ADSELTLSLAH-------------SESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPL 181
             +    SL +                D     K   D        +TSGTT+ PKGV L
Sbjct: 156 DPTCDPKSLQYALGKGAIEYEKFLETGDPEFAWKPPADEWQSIALGYTSGTTASPKGVVL 215

Query: 182 TQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHG-----MLAGLLSSFAAGAAVTLPAA 236
                     +   ++ + E    +  LP+FH +G      LA L      G  + L   
Sbjct: 216 HHRGAYLMALSNALIWGMNEGAVYLWTLPMFHCNGWCFTWTLAAL-----CGTNICLR-- 268

Query: 237 GRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKP--EPVYPKLRFIRSCSASLAP- 293
            + +A   +  +  Y  T + A P    +VL+  V  P  E + P  R +   +A  AP 
Sbjct: 269 -QVTAKAIYSAIANYGVTHFCAAP----VVLNTIVNAPKSETILPLPRVVHVMTAGAAPP 323

Query: 294 -VILSRLEEAFGAPVLEAYAMTEATHLMSS--------NPLPEDGPHKPGSVG--RPVGQ 342
             +L  + E  G  V   Y ++E T+  S+        + LP +   +  +    R +G 
Sbjct: 324 PSVLFAMSEK-GFRVTHTYGLSE-TYGPSTVCAWKPEWDSLPPEEQARLNARQGVRYIGL 381

Query: 343 E----IAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFD 398
           E    +       VP +G   GE+ +RG  V KGY  NP+AN+ AF  GWFH+GD+G   
Sbjct: 382 EGLDVVDTKTMKPVPADGKTMGEIVMRGNMVMKGYLKNPKANEEAFANGWFHSGDLGVKH 441

Query: 399 SDGYLHLVGRIKELINRGGNLHESIS 424
            DGY+ +  R K++I  GG   E+IS
Sbjct: 442 PDGYIEIKDRSKDIIISGG---ENIS 464

Length = 567

>gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score =  102 bits (255), Expect = 2e-23
 Identities = 112/433 (25%), Positives = 187/433 (43%), Gaps = 35/433 (8%)

Query: 11  NQVIDQFSSKRALS----------VSGKFD---LTYSRIHELVERAASRLV-AAGINAGD 56
           + V+DQ++ K              V+GK D    ++  +  L  +AA+ L  A G+  GD
Sbjct: 9   SDVLDQWADKEKAGKRPPNPALWWVNGKGDEVKWSFRELGSLSRKAANVLSGACGLQRGD 68

Query: 57  VVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAA 116
            VA+  P   E+ ++ +A IR      P     T  +  + L  S++K ++T  E   A 
Sbjct: 69  RVAVILPRVPEWWLVNVACIRTGLVFIPGTIQLTAKDILYRLQASKAKCIVTSDELAPAV 128

Query: 117 QAAASKLNISHATATLLDADSE---LTL-SLAHSESDT-NAISKLTNDPSDVALFLHTSG 171
            + AS+   S  T  L+   S    L    L    S     +   + +P   A++  TSG
Sbjct: 129 DSIASECP-SLKTKLLVSEHSRDGWLNFKELLKEASTEHTCVKTKSQEPM--AIYF-TSG 184

Query: 172 TTSRPKGVPLTQNNLA-ASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAA 230
           TT  PK    + ++L      N +    LT SD    +     +   +  L S +  GA 
Sbjct: 185 TTGFPKMAEHSHSSLGLGLKVNGRYWLDLTPSDIMWNMSDTGWIKAAIWSLFSPWIQGAC 244

Query: 231 VTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSAS 290
           V +    RF      Q + KY  T + + PT++++++ + +   +  +  LR   +    
Sbjct: 245 VFVHHLPRFDPKVILQTLSKYPITTFCSAPTVYRMLVQQDLTSYK--FKSLRHCVTGGEP 302

Query: 291 LAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDE 349
           L P +L + +   G  + E Y  TE T L+ +N        KPGS+G+     ++ I+D+
Sbjct: 303 LNPEVLEQWKAQTGLDLYEGYGQTE-TGLICANFKGMK--IKPGSMGKASPPYDVQIIDD 359

Query: 350 IGVPQEGGAKGEVCIR-GPN----VTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLH 404
            G     G +G++ IR  P     +   Y +NPE   +     ++ TGD G  D DGY  
Sbjct: 360 NGNVLPPGTEGDIGIRVKPTRPFCLFSCYVDNPEKTAATIRGDFYITGDRGIMDEDGYFW 419

Query: 405 LVGRIKELINRGG 417
            VGR  ++IN  G
Sbjct: 420 FVGRADDVINSSG 432

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score =  102 bits (255), Expect = 6e-23
 Identities = 93/397 (23%), Positives = 154/397 (38%), Gaps = 30/397 (7%)

Query: 25   VSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAP 84
            V G   L+Y+ ++    R A RL+A G+    +V +    +VE ++  LAV++A     P
Sbjct: 3115 VFGDQQLSYAELNRRANRLAHRLIAIGVGPDVLVGVAVERSVEMIVALLAVLKAGGAYVP 3174

Query: 85   LNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLA 144
            L+  Y  +   + + DS  KLLLT A       A A        TA  LD          
Sbjct: 3175 LDPEYPRERLAYMIEDSGVKLLLTQAHLLEQLPAPA------GDTALTLDRLDL------ 3222

Query: 145  HSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDS 204
            +  S+ N  +++     ++A  ++TSG+T +PKGV +    LA  +  I   Y+L  +D 
Sbjct: 3223 NGYSENNPSTRV--MGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWIAEAYELDAND- 3279

Query: 205  TVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQ 264
             V++   F   G     L +   G  + +     +     WQ +  +  +     P   Q
Sbjct: 3280 RVLLFMSFSFDGAQERFLWTLICGGCLVVRDNDLWDPEELWQAIHAHRISIACFPPAYLQ 3339

Query: 265  IVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFG-APVLEAYAMTEATHLMSSN 323
               +            L        ++ P    +++       +   Y  TEA   ++  
Sbjct: 3340 QFAEDAGGAD---CASLDIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTVTLW 3396

Query: 324  PLPEDGPHKPGSV--GRPVGQ-EIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEAN 380
                D   +      GRPV    I +LD    P   G  GE+ I G  + +GY   P   
Sbjct: 3397 KCGGDAVCEAPYAPIGRPVAGRSIYVLDGQLNPVPVGVAGELYIGGVGLARGYHQRPSLT 3456

Query: 381  KSAFLFGWFH--------TGDIGYFDSDGYLHLVGRI 409
               F+   F         TGD+  + +DG +  +GRI
Sbjct: 3457 AERFVADPFSGSGGRLYRTGDLARYRADGVIEYLGRI 3493

Length = 3956

>gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated

 Score =  100 bits (250), Expect = 9e-23
 Identities = 80/272 (29%), Positives = 116/272 (42%), Gaps = 12/272 (4%)

Query: 159 DPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGML 218
           DP DVA+ L TSGT   PKGVPLT  NL A+       +   E D  +  LP FH +G  
Sbjct: 181 DPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFSPKEDDVMMSFLPPFHAYGFN 240

Query: 219 AGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVY 278
           +  L    +G  V   A          + + +   T+  + P     +L +   K E   
Sbjct: 241 SCTLFPLLSGVPVVF-AYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYIL-KTAKKQESCL 298

Query: 279 PKLRFIRSCSASLAPVILSRLEEAFGAPVL-EAYAMTEATHLMSSNPLPEDGPHKPGSVG 337
           P LRF+     +    +     + F    L + Y  TE + +++ N    + P     VG
Sbjct: 299 PSLRFVVIGGDAFKDSLYQEALKTFPHIQLRQGYGTTECSPVITIN--TVNSPKHESCVG 356

Query: 338 RPV-GQEIAIL-DEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFG--WFHTGD 393
            P+ G ++ I+ +E  VP   G  G V  RG ++  GY           L G  W+ TGD
Sbjct: 357 MPIRGMDVLIVSEETKVPVSSGETGLVLTRGTSLFSGYLGEDFGQGFVELGGETWYVTGD 416

Query: 394 IGYFDSDGYLHLVGRIKELINRGGNLHESISL 425
           +GY D  G L L GR+   +  G    E +SL
Sbjct: 417 LGYVDRHGELFLKGRLSRFVKIGA---EMVSL 445

Length = 539

>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS)

 Score =  100 bits (250), Expect = 1e-22
 Identities = 107/456 (23%), Positives = 168/456 (36%), Gaps = 92/456 (20%)

Query: 31  LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
           LTY + +E   +AA   +  G+     V +   N+ E+ I  +  I A   A  +    +
Sbjct: 9   LTYKQYYEACRQAAKAFLKLGLERFHSVGILGFNSPEWFIAAVGAIFAGGIAVGIYTTNS 68

Query: 91  PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATL------------------ 132
           P+  ++    SE+ +L+        A+     L I      L                  
Sbjct: 69  PEACQYVAETSEANILVVDN-----AKQLQKILAIQDQLPHLKAIIQYREPLKEKEPNLY 123

Query: 133 -LDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVS 191
                 EL  S+   + D   I   +  P+     ++TSGTT  PKGV L+ +N+  +  
Sbjct: 124 SWKEFMELGRSIPDEQLD-AIIE--SQKPNQCCTLIYTSGTTGMPKGVMLSHDNITWTAK 180

Query: 192 NIKSVYKLTESDSTVIV--LPLFHVHGMLAGLLSSFAAGAAVTL--PAAGRFS-ASTF-- 244
                  L       +V  LPL H+   +  +    + G  V    P A + +   T   
Sbjct: 181 AAVKHMDLRTVGQESVVSYLPLSHIAAQILDIWLPISVGGCVYFAQPDALKGTLVKTLRE 240

Query: 245 ------------W---QDMIKYN-----------ATWYTAVPTIHQIVLDR--------- 269
                       W   Q+ +K             A+W   V     + L           
Sbjct: 241 VRPTAFMGVPRVWEKIQERMKAVGAKSTGLKRKIASWAKGVGLETNLKLMGGESPPPMCF 300

Query: 270 HVAKP---EPVYPKLRFIR--SCSASLAPVILSRLEEAF---GAPVLEAYAMTEAT--HL 319
            +AK    + V   L   R        AP I     E F     P++E Y M+E +  H 
Sbjct: 301 RLAKKLVFKKVRKALGLDRCQKFFTGAAP-ISRETLEFFLSLNIPIMELYGMSETSGPHT 359

Query: 320 MSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPE 378
           +S+        ++  S G+ + G E  I        +    GE+CI G +V  GY N  E
Sbjct: 360 VSN-----PQNYRLLSCGKALPGCETKI-----HNPDADGIGEICIWGRHVFMGYLNMEE 409

Query: 379 ANKSAF-LFGWFHTGDIGYFDSDGYLHLVGRIKELI 413
             + A    GW H+GD+G+ D DG+L++ GRIKELI
Sbjct: 410 KTEEAIDEDGWLHSGDLGFLDDDGFLYITGRIKELI 445

This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 99.9 bits (249), Expect = 2e-22
 Identities = 128/447 (28%), Positives = 188/447 (42%), Gaps = 82/447 (18%)

Query: 31  LTYSRIHELVERAASRLVAAGINA----GDVVALTFPNTVEFVIMFLAVIRARATAAPLN 86
           L+Y    +L  RA  R +AA + A    GD   L FP+  ++V  F   + A   A P  
Sbjct: 41  LSY---RDLDLRA--RTIAAALQARASFGDRAVLLFPSGPDYVAAFFGCLYAGVIAVP-- 93

Query: 87  AAYTPDEF-----EFYLS---DSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSE 138
            AY P+       E  LS   D+E +LLLT A+   +         ++ A A  L     
Sbjct: 94  -AYPPESARRHHQERLLSIIADAEPRLLLTVADLRDSLLQMEE---LAAANAPELLCVDT 149

Query: 139 LTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYK 198
           L  +LA +  +          P D+A   +TSG+T+ PKGV ++  NL A+   I+  + 
Sbjct: 150 LDPALAEAWQEPAL------QPDDIAFLQYTSGSTALPKGVQVSHGNLVANEQLIRHGFG 203

Query: 199 LTESDSTVIV--LPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTF-WQDMI-KYNAT 254
           +  +   VIV  LPL+H  G++ GLL    +G    L +   F      W + I +Y  T
Sbjct: 204 IDLNPDDVIVSWLPLYHDMGLIGGLLQPIFSGVPCVLMSPAYFLERPLRWLEAISEYGGT 263

Query: 255 WYTAVPTIHQIVLDRHVAKPEPVYPKL-----RFIRSCSASLAPVILSRLEEAFGA---- 305
                   +++  +R V+  E    +L     R   S S  +    L R  E F A    
Sbjct: 264 ISGGPDFAYRLCSER-VS--ESALERLDLSRWRVAYSGSEPIRQDSLERFAEKFAACGFD 320

Query: 306 --PVLEAYAMTEATHLMSSNPLPEDGPH-------------KPG------SVGRPV-GQE 343
                 +Y + EAT  +S     +  P              +PG      S GR   G  
Sbjct: 321 PDSFFASYGLAEATLFVSGGRRGQGIPALELDAEALARNRAEPGTGSVLMSCGRSQPGHA 380

Query: 344 IAILDEIGVPQEG-----GAKGEVCIRGPNVTKGYKNNPEANKSAFL----FGWFHTGDI 394
           + I+D    PQ          GE+   GP++  GY  NPEA+   F+      W  TGD+
Sbjct: 381 VLIVD----PQSLEVLGDNRVGEIWASGPSIAHGYWRNPEASAKTFVEHDGRTWLRTGDL 436

Query: 395 GYFDSDGYLHLVGRIKE-LINRGGNLH 420
           G F  DG L + GR+K+ LI RG NL+
Sbjct: 437 G-FLRDGELFVTGRLKDMLIVRGHNLY 462

Length = 4334

>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

 Score = 99.4 bits (248), Expect = 3e-22
 Identities = 85/298 (28%), Positives = 124/298 (41%), Gaps = 67/298 (22%)

Query: 160 PSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLA 219
           P D AL L TSG+   PKGV  +  +L A+V  IK++   T +D  +  LPLFH  G+  
Sbjct: 364 PEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTPNDRFMSALPLFHSFGLTV 423

Query: 220 GLLSSFAAGAAVTL---PAAGR--------------FSASTFWQDMIKYNATWYTAVPTI 262
           GL +    GA V L   P   R              F  STF  +  ++           
Sbjct: 424 GLFTPLLTGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARF----------- 472

Query: 263 HQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSS 322
                    A P     +LR++ + +  L        ++ FG  +LE Y +TE   ++S 
Sbjct: 473 ---------ANPYDFA-RLRYVVAGAEKLQESTKQLWQDKFGLRILEGYGVTECAPVVSI 522

Query: 323 N-PLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGY------- 373
           N P+      KPG+VGR + G +  +L   G+ Q     G + ++GPN+  GY       
Sbjct: 523 NVPMAA----KPGTVGRILPGMDARLLSVPGIEQ----GGRLQLKGPNIMNGYLRVEKPG 574

Query: 374 ------KNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISL 425
                   N          GW+ TGDI  FD  G++ + GR K      G   E +SL
Sbjct: 575 VLEVPTAENARGEMER---GWYDTGDIVRFDEQGFVQIQGRAKRFAKIAG---EMVSL 626

Length = 718

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 99.3 bits (247), Expect = 5e-22
 Identities = 101/403 (25%), Positives = 157/403 (38%), Gaps = 40/403 (9%)

Query: 25   VSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAP 84
            V G   L+Y+ +     R A RL A G+     VA+    + E V+  LAV++A     P
Sbjct: 2023 VFGDQHLSYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVALLAVLKAGGAYVP 2082

Query: 85   LNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATL-LDADSELTLSL 143
            L+  Y  +   + L DS + LLLT        +    +L +    A L LD D+E     
Sbjct: 2083 LDPNYPAERLAYMLEDSGAALLLT-------QRHLLERLPLPAGVARLPLDRDAEWA--- 2132

Query: 144  AHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESD 203
                 DT    +L     ++A  ++TSG+T  PKGV ++   L A        Y+L+ +D
Sbjct: 2133 --DYPDTAPAVQL--AGENLAYVIYTSGSTGLPKGVAVSHGALVAHCQAAGERYELSPAD 2188

Query: 204  STVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIH 263
               +    F   G           GA V +     +     + +M ++  T     P   
Sbjct: 2189 -CELQFMSFSFDGAHEQWFHPLLNGARVLIRDDELWDPEQLYDEMERHGVTILDFPPVYL 2247

Query: 264  QIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPV--LEAYAMTEATHLMS 321
            Q + +   A+ +   P +R +        P    RL      PV     Y  TEA     
Sbjct: 2248 QQLAE--HAERDGRPPAVR-VYCFGGEAVPAASLRLAWEALRPVYLFNGYGPTEAV---- 2300

Query: 322  SNPLPED-GPHKP-GSVGRPVGQEIA-----ILDEIGVPQEGGAKGEVCIRGPNVTKGYK 374
              PL     P  P G+   P+G+ +      ILD        G  GE+ + G  + +GY 
Sbjct: 2301 VTPLLWKCRPQDPCGAAYVPIGRALGNRRAYILDADLNLLAPGMAGELYLGGEGLARGYL 2360

Query: 375  NNPEANKSAFL---FG-----WFHTGDIGYFDSDGYLHLVGRI 409
            N P      F+   F       + TGD+  + +DG +  +GRI
Sbjct: 2361 NRPGLTAERFVPDPFSASGERLYRTGDLARYRADGVVEYLGRI 2403

Length = 5163

>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme)

 Score = 97.2 bits (243), Expect = 9e-22
 Identities = 119/446 (26%), Positives = 182/446 (40%), Gaps = 96/446 (21%)

Query: 31  LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
           +TY  ++  V R A+ L + G+  GD VA+  P   E  I  LA  R  A  + + A ++
Sbjct: 79  ITYRELYREVCRFANVLKSLGVKKGDRVAIYMPMIPELPIAMLACARIGAIHSVVFAGFS 138

Query: 91  PDEFEFYLSDSESKLLLTPAEG-------------NAAAQAAASKLNISHATATLLDADS 137
            +     ++D++SKLL+T   G             + A +   S   +     T  +   
Sbjct: 139 AEALADRINDAKSKLLITADGGYRGGKVIPLKEIVDEALEKCPSVEKVIVVKRTGGEVPM 198

Query: 138 ELTLSLAHSESDTNAISKLT------NDPSDVALF-LHTSGTTSRPKGVPLTQ---NNLA 187
                +   +    A            DP    LF L+TSG+T +PKGV  T       A
Sbjct: 199 VEGRDVWWHDLMAKASPYCEPEPMDAEDP----LFILYTSGSTGKPKGVVHTTGGYLVYA 254

Query: 188 ASVSNIKSVYKLTESD--------------STVIVLPLFHVHGMLAGLLSSFAAGAAVTL 233
           A+    K V+ +   D              S ++  PL        G  +    GA    
Sbjct: 255 ATTF--KYVFDIHPDDVYWCTADIGWITGHSYIVYGPL------ANGATTVMYEGAP-DY 305

Query: 234 PAAGRFSASTFWQDMI-KYNAT-WYTAVPT-IHQIVLDRHVAKPEPVYPK------LRFI 284
           P  GR     +W +++ KY  T +YTA PT I      R + +    +PK      LR +
Sbjct: 306 PDPGR-----WW-EIVEKYKVTIFYTA-PTAI------RMLMRFGDEWPKKHDLSSLRLL 352

Query: 285 RSCSASLAPVILSRLEEAF-------G---APVLEAYAMTEATHLMSSNPLPEDGPHKPG 334
            S    + P       EA+       G    P+++ +  TE    M + PLP   P KPG
Sbjct: 353 GSVGEPINP-------EAWMWYYEVIGKERCPIVDTWWQTETGGHMIT-PLPGATPLKPG 404

Query: 335 SVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRG--PNVTKGYKNNPEANKSAFL--F-GW 388
           S  RP  G E AI+DE G   EGG +G + I+   P + +    + E     +   F G+
Sbjct: 405 SATRPFPGVEPAIVDEEGNEVEGGVEGYLVIKRPWPGMLRTIYGDHERYVKTYFSKFPGY 464

Query: 389 FHTGDIGYFDSDGYLHLVGRIKELIN 414
           + TGD    D DGY  ++GR+ ++IN
Sbjct: 465 YFTGDGARRDEDGYYWILGRVDDVIN 490

Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602

>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional

 Score = 96.8 bits (241), Expect = 1e-21
 Identities = 104/393 (26%), Positives = 157/393 (39%), Gaps = 21/393 (5%)

Query: 31  LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
           LT+  + E  +  A+ L A  I    VV +   N   FV   LA  R  A    LN ++ 
Sbjct: 69  LTWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALLAANRIGADILLLNTSFA 128

Query: 91  PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDT 150
                  ++      ++   E +A    A +      AT  +   D +  L++       
Sbjct: 129 GPALAEVVTREGVDTVIYDEEFSATVDRALADC--PQATRIVAWTDEDHDLTVE-VLIAA 185

Query: 151 NAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLP 210
           +A  +         + L TSGTT  PKG   +      ++  I         + TVIV P
Sbjct: 186 HAGQRPEPTGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRTPWRAEEPTVIVAP 245

Query: 211 LFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRH 270
           +FH  G  + L+   AA  A T+    RF        + ++ AT    VP +     DR 
Sbjct: 246 MFHAWG-FSQLV--LAASLACTIVTRRRFDPEATLDLIDRHRATGLAVVPVM----FDRI 298

Query: 271 VAKPEPVYPK-----LRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPL 325
           +  P  V  +     LRF  +  + + P ++    + FG  +   Y  TEA   M +   
Sbjct: 299 MDLPAEVRNRYSGRSLRFAAASGSRMRPDVVIAFMDQFGDVIYNNYNATEAG--MIATAT 356

Query: 326 PEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAF 384
           P D    P + GRP  G EI ILD+       G  G + +R      GY     + K  F
Sbjct: 357 PADLRAAPDTAGRPAEGTEIRILDQDFREVPTGEVGTIFVRNDTQFDGY--TSGSTK-DF 413

Query: 385 LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
             G+  +GD+GY D +G L +VGR  E+I  GG
Sbjct: 414 HDGFMASGDVGYLDENGRLFVVGRDDEMIVSGG 446

Length = 537

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 97.3 bits (242), Expect = 2e-21
 Identities = 91/400 (22%), Positives = 153/400 (38%), Gaps = 37/400 (9%)

Query: 25  VSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAP 84
             G+  L Y+ ++    R A  L+  G+    +V +    ++E V+  LA+++A     P
Sbjct: 531 AFGEETLDYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLAILKAGGAYVP 590

Query: 85  LNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLA 144
           L+  Y  +   + L DS  +LLL+             KL ++     L        L   
Sbjct: 591 LDPEYPAERLAYMLEDSGVQLLLS-------QSHLGRKLPLAAGVQVLDLDRPAAWLE-G 642

Query: 145 HSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDS 204
           +SE +         +P ++A  ++TSG+T +PKG       L+  +  ++  Y L   D+
Sbjct: 643 YSEEN----PGTELNPENLAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQQAYGLGVGDT 698

Query: 205 TVIVLPL-FHV-HGMLAGLLSSFAAGAAVTLPAAG-RFSASTFWQDMIKYNATWYTAVPT 261
            +   P  F V        L S   GA + + A G     +   + + +        VP+
Sbjct: 699 VLQKTPFSFDVSVWEFFWPLMS---GARLVVAAPGDHRDPAKLVELINREGVDTLHFVPS 755

Query: 262 IHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFG----APVLEAYAMTEAT 317
           + Q  L              R +  CS    P      E+ F     A +   Y  TEA 
Sbjct: 756 MLQAFL--QDEDVASCTSLRRIV--CSGEALP--ADAQEQVFAKLPQAGLYNLYGPTEAA 809

Query: 318 HLMSSNPLPEDGPHKPGSVGRPVGQEIA-ILDEIGVPQEGGAKGEVCIRGPNVTKGYKNN 376
             ++     E+G      +GRP+      ILD    P   G  GE+ + G  + +GY   
Sbjct: 810 IDVTHWTCVEEGGDSV-PIGRPIANLACYILDANLEPVPVGVLGELYLAGRGLARGYHGR 868

Query: 377 PEANKSAFL---FG----WFHTGDIGYFDSDGYLHLVGRI 409
           P      F+   F      + TGD+  + +DG +   GRI
Sbjct: 869 PGLTAERFVPSPFVAGERMYRTGDLARYRADGVIEYAGRI 908

Length = 5163

>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi

 Score = 95.2 bits (237), Expect = 3e-21
 Identities = 98/412 (23%), Positives = 150/412 (36%), Gaps = 92/412 (22%)

Query: 32  TYSRIHELVERAASRLVAA-GINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
           TYS  ++LV R A  L     + +GD VA+   N+ EFV ++LA+    A  A +N   +
Sbjct: 7   TYSETYDLVLRYAHWLHGDRNVQSGDFVAIDTTNSAEFVFLWLALWSIGAVPAFINYNLS 66

Query: 91  PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDT 150
            D     L  S +K ++                                           
Sbjct: 67  GDPLIHCLKISGAKFVIV------------------------------------------ 84

Query: 151 NAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLP 210
                   DP D A  ++TSGTT  PKG  ++      + + +     L   D T   +P
Sbjct: 85  --------DPDDPAALIYTSGTTGLPKGCAISWRRTLVTSNPLSHDLNLQFPDRTYTCMP 136

Query: 211 LFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRH 270
           L+H      GL     +G  + L  + +FSAS FW+D+    AT    V  + + +L   
Sbjct: 137 LYHGTAAFLGLCYCLGSGGTLCL--SRKFSASQFWKDVRDSEATIIQYVGELCRYLLA-- 192

Query: 271 VAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVL-EAYAMTEATHLMSSNPLPEDG 329
              P P     +   +    L P I  R  E F  P + E YA TE     +++     G
Sbjct: 193 -TPPSPYDRDHKVRVAYGNGLRPDIWERFRERFNVPEIGEFYAATEGVFAFTNH---NVG 248

Query: 330 PHKPGSVGR--------------PVGQEIAILDEIGVPQEG-------GAKGEVCIRGPN 368
           P   G++G                V  +      I  P+ G       G  GE+  R   
Sbjct: 249 PFTAGAIGFSGLIRRWFLENQVFLVKMDPETDMPIRDPKTGFCVRAPVGEPGEMLGRVRF 308

Query: 369 VTK----GYKNNPEANKSAFLFG-------WFHTGDIGYFDSDGYLHLVGRI 409
             +    GY  N +A +S  L         W+ TGD+   D+DG  + + R+
Sbjct: 309 KNRELFQGYLKNEDATESKLLRDVFRKGDIWYRTGDLLRQDADGRWYFLDRL 360

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468

>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase

 Score = 94.3 bits (235), Expect = 6e-21
 Identities = 107/410 (26%), Positives = 160/410 (39%), Gaps = 75/410 (18%)

Query: 31  LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
            TYS +   V R AS L A G+  GD V +  P   E V+  LA+ +  A A P+ + + 
Sbjct: 8   WTYSELAREVNRLASGLAALGLGKGDRVGIYMPMIPEAVVALLAIAKIGAIAVPIFSGFG 67

Query: 91  PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDT 150
           PD     L D+E+K+L+T A+G                                      
Sbjct: 68  PDAVATRLQDAEAKVLIT-ADG---------------------------------FLRRG 93

Query: 151 NAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNN-LAASVSNIKSVYKLTESDSTVIVL 209
             +  L +DP   A+ ++TSGTT +PKG   T       +  +I   + L   D     L
Sbjct: 94  KRVD-LKDDP---AMIIYTSGTTGKPKGTVHTHAGFPVKAAKDIGFCFDLKPGD----RL 145

Query: 210 PLFHVHGMLAG---LLSSFAAGAAVTL-------PAAGRFSASTFWQDMIKYNATWYTAV 259
                 G + G   +L     GA + L       P   R      W+ + ++  T     
Sbjct: 146 LWITDMGWMMGPWLVLGGLLLGATIVLYEGAPDYPDPDR-----LWRIVERHKVTHLGLS 200

Query: 260 PTIHQIVLDRHVAKPEP-VYPKLRFIRSCSASLAPVILSRLEEAFG---APVLEAYAMTE 315
           PT+ + +     A  E      LR + S      P     L E  G   AP++     TE
Sbjct: 201 PTLIRALRAHGDAPVEGHDLSSLRVLGSTGEPWDPESWLWLFERVGGGRAPIINYSGGTE 260

Query: 316 AT-HLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNV--TK 371
            +  ++ + P+    P KP S   P  G +  ++DE G P  G   GE+ +R P    T+
Sbjct: 261 ISGGILGNVPIR---PIKPCSFNGPSPGMDADVVDEDGRPVRGE-VGELVVRAPWPGMTR 316

Query: 372 GYKNNP----EANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
           G+  +P    E   S F   W H GD    D DGY +++GR  + I   G
Sbjct: 317 GFWRDPERYLETYWSRFPGVWVH-GDWALVDEDGYWYILGRSDDTIKVAG 365

This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474

>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein

 Score = 94.8 bits (236), Expect = 8e-21
 Identities = 123/483 (25%), Positives = 184/483 (38%), Gaps = 128/483 (26%)

Query: 31  LTYSRIHELVERAASRLVAAGINAGDVVALTFPNT-VEFVIMFLAVIRARATAAPLNAAY 89
           +TY ++ E V   AS LVA G N  + VA+ F +T  E++I      R   T   + A+ 
Sbjct: 107 ITYGQVFERVCNFASGLVALGHNKEERVAI-FADTRAEWLIALQGCFRQNITVVTIYASL 165

Query: 90  TPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSES- 148
             +     L+++E   ++  ++        +S+L        + D   +   SL+ S + 
Sbjct: 166 GEEALCHSLNETEVTTVICDSKQLKKLIDISSQLETVKRVIYMDDEGVDSDSSLSGSSNW 225

Query: 149 ------------DTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNI-KS 195
                         N +      P+D+A+ ++TSG+T  PKGV +T  N+ A+V+ +   
Sbjct: 226 TVSSFSEVEKLGKENPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGVMTV 285

Query: 196 VYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQ--------- 246
           V KL ++D  +  LPL H+   LA      A GAA+     G  S  T            
Sbjct: 286 VPKLGKNDVYLAYLPLAHIL-ELAAESVMAAVGAAI-----GYGSPLTLTDTSNKIKKGT 339

Query: 247 --DMIKYNATWYTAVPTIHQIVLD----------------------RHVAKPEP------ 276
             D      T  TAVP I   V D                      R +A  E       
Sbjct: 340 KGDASALKPTLMTAVPAILDRVRDGVRKKVDAKGGLAKKLFDIAYKRRLAAIEGSWFGAW 399

Query: 277 ----------VYPK--------LRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTE--- 315
                     V+ K        +RF+ S  A L+      +    GAP+ + Y +TE   
Sbjct: 400 GLEKLLWDALVFKKIRAVLGGRIRFMLSGGAPLSGDTQRFINICLGAPIGQGYGLTETCA 459

Query: 316 -ATHLMSSNPLPEDGPHKPGSVGRPVGQEIAILDEIGVP-----------QEGGAK---- 359
            AT    S     D      SVGR           +G P           +EGG      
Sbjct: 460 GATF---SEW---DDT----SVGR-----------VGPPLPCCYVKLVSWEEGGYLISDK 498

Query: 360 ----GEVCIRGPNVTKGYKNNPEANKSAFLFG-----WFHTGDIGYFDSDGYLHLVGRIK 410
               GE+ I GP+VT GY  N E     +        WF+TGDIG F  DG L ++ R K
Sbjct: 499 PMPRGEIVIGGPSVTLGYFKNQEKTDEVYKVDERGMRWFYTGDIGQFHPDGCLEIIDRKK 558

Query: 411 ELI 413
           +++
Sbjct: 559 DIV 561

Length = 696

>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated

 Score = 94.2 bits (235), Expect = 1e-20
 Identities = 117/452 (25%), Positives = 166/452 (36%), Gaps = 56/452 (12%)

Query: 5   TLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPN 64
            +  L   V D    + AL V G   LTY+ + E   R A  L+A G+  GD V +   N
Sbjct: 4   NIADLFEAVADAVPDRVAL-VCGDRRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARN 62

Query: 65  TVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLL---TPAEGNAAAQAAAS 121
            +E+V   L   +ARA    +N  Y  DE  + L DS++  L+     A   A       
Sbjct: 63  RIEYVEAMLGAFKARAVPVNVNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVLPRLP 122

Query: 122 KLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDP----SDVALFLHTSGTTSRPK 177
           KL        + D      L  A    D  A      D      D    L+T GTT  PK
Sbjct: 123 KL---RTLVVVEDGSGNDLLPGAVDYEDALAAGSPERDFGERSPDDLYLLYTGGTTGMPK 179

Query: 178 GVPLTQNNL---------AASVSNIKSVYKLTE-----SDSTVIVL-PLFHVHGMLAGLL 222
           GV   Q ++          A+   I+   +L +              PL H  G  A   
Sbjct: 180 GVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPAPPLMHGAGQWAAFA 239

Query: 223 SSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAV------PTIHQIVLDRHVAKPEP 276
           + F+    V LP   RF A   W+ + +      T V      P +        +    P
Sbjct: 240 ALFSGQTVVLLPDV-RFDADEVWRTIEREKVNVITIVGDAMARPLL------DALEARGP 292

Query: 277 VY--PKLRFIRSCSASLAPVILSRLEEAF-GAPVLEAYAMTEATHLMSSNPLPEDGPHKP 333
            Y    L  I S  A  +P +   L E      + ++   +E     S       G    
Sbjct: 293 -YDLSSLFAIASGGALFSPSVKEALLELLPNVVLTDSIGSSETGFGGSG--TVAKGAVHT 349

Query: 334 GSVGRPVGQEIAILDEIGVPQEGGAKGEVCI--RGPNVTKGYKNNPEANKSAFLF----G 387
           G     +G    +LDE G P E G+ GE+    R  ++  GY  +PE  K+A  F    G
Sbjct: 350 GGPRFTIGPRTVVLDEDGNPVEPGS-GEIGWIARRGHIPLGYYKDPE--KTAETFPTIDG 406

Query: 388 --WFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
             +   GD    ++DG + L+GR    IN GG
Sbjct: 407 VRYAIPGDRARVEADGTITLLGRGSVCINTGG 438

Length = 533

>gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional

 Score = 93.6 bits (233), Expect = 3e-20
 Identities = 111/439 (25%), Positives = 164/439 (37%), Gaps = 72/439 (16%)

Query: 4   VTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFP 63
            TL  L+ Q   +     AL+ +  +  +Y  + E V   A+ L   G+  GD VA+  P
Sbjct: 458 TTLSALVAQQAAKTPDAPALADAR-YQFSYREMREQVVALANLLRERGVKPGDSVAVALP 516

Query: 64  NTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKL 123
            +V   +   A++ A A   PL+  Y  D  +  L D+   LL+T      A Q      
Sbjct: 517 RSVFLTLALHAIVEAGAAWLPLDTGYPDDRLKMMLEDARPSLLIT-----TADQL----- 566

Query: 124 NISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQ 183
                     D     +L      +   A     + P   A  + TSG+T RPKGV + Q
Sbjct: 567 ------PRFADVPDLTSLCYNAPLAPQGAAPLQLSQPHHTAYIIFTSGSTGRPKGVMVGQ 620

Query: 184 NNLAASVSNIKSVYKLTESDST---------VIVLPLFHVHGMLAGLLSSFAAGAAVTL- 233
             +   +  +++ Y LT  D           V V   F            F AGA + + 
Sbjct: 621 TAIVNRLLWMQNHYPLTADDVVLQKTPCSFDVSVWEFFW----------PFIAGAKLVMA 670

Query: 234 -PAAGRFSASTFWQDMI-KYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASL 291
            P A R   +   Q    +Y  T    VP++    L   VA   P        R   ASL
Sbjct: 671 EPEAHRDPLAM--QQFFAEYGVTTTHFVPSM----LAAFVASLTP-----EGARQSCASL 719

Query: 292 APVILS----------RLEEAFGAPVLEAYAMTEATHLMSSNPL-PEDGPHKPGS---VG 337
             V  S            ++  GAP+   Y  TEA   +S  P   E+     GS   +G
Sbjct: 720 RQVFCSGEALPADLCREWQQLTGAPLHNLYGPTEAAVDVSWYPAFGEELAAVRGSSVPIG 779

Query: 338 RPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWF------- 389
            PV    + ILD    P   G  G++ + G  + +GY   P+   S F+   F       
Sbjct: 780 YPVWNTGLRILDARMRPVPPGVAGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMY 839

Query: 390 HTGDIGYFDSDGYLHLVGR 408
            TGD+  +  DG +  +GR
Sbjct: 840 RTGDVARWLDDGAVEYLGR 858

Length = 1296

>gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional

 Score = 91.6 bits (227), Expect = 6e-20
 Identities = 100/397 (25%), Positives = 153/397 (38%), Gaps = 41/397 (10%)

Query: 31  LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
           L+Y  +    E  A RL   G+  G  V +   N   FV    AV    A   P++  + 
Sbjct: 61  LSYRELQRATESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVFAVGLLGADVVPISTEFR 120

Query: 91  PDEFEFYLSDSESKLLLTPAE-GNAAAQAAASKLNISHATATLLDADSELTLSLAHSESD 149
            D     L       ++   E     A A  +   I  ATA   ++     ++       
Sbjct: 121 SDALAAALRAHHISTVVADNEFAERIAGADDAVAVIDPATAGAEESGGRPAVA------- 173

Query: 150 TNAISKLTNDPSDVALFLHTSGTTSRPKGVPLT---QNNLAASVSNIKSVYKLTESDSTV 206
                     P  + L   TSGTT +PKGVP     ++ +   V+ +    +L       
Sbjct: 174 ---------APGRIVLL--TSGTTGKPKGVPRAPQLRSAVGVWVTILDRT-RLRTGSRIS 221

Query: 207 IVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIV 266
           + +P+FH  G+   +L+    G  +T      F A         + A  +TAVP    +V
Sbjct: 222 VAMPMFHGLGLGMLMLTIALGGTVLT---HRHFDAEAALAQASLHRADAFTAVP----VV 274

Query: 267 LDRHVAKPEPV-----YPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMS 321
           L R +  P  V      P+LR + S    L P +  R  + +G  +   Y  TE    + 
Sbjct: 275 LARILELPPRVRARNPLPQLRVVMSSGDRLDPTLGQRFMDTYGDILYNGYGSTEVG--IG 332

Query: 322 SNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEAN 380
           +   P D    P +VG+PV G  + ILD    P      G + + G      Y +     
Sbjct: 333 ALATPADLRDAPETVGKPVAGCPVRILDRNNRPVGPRVTGRIFVGGELAGTRYTD---GG 389

Query: 381 KSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
             A + G   TGD+GY D+ G L +VGR  ++I  GG
Sbjct: 390 GKAVVDGMTSTGDMGYLDNAGRLFIVGREDDMIISGG 426

Length = 516

>gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed

 Score = 91.9 bits (229), Expect = 7e-20
 Identities = 105/409 (25%), Positives = 162/409 (39%), Gaps = 70/409 (17%)

Query: 31  LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
           LTY+   E V   A  L+  G++A   + +   N++E  ++ LA + A    AP++ AY+
Sbjct: 70  LTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLALAAMYAGVPYAPVSPAYS 129

Query: 91  PDEFEFYLSDSESKL-----LLTPA-----EGNAAAQA---------------AASKLNI 125
                  +S    KL     LLTP      +G A A+A                A     
Sbjct: 130 ------LVSQDFGKLRHVLELLTPGLVFADDGAAFARALAAVVPADVEVVAVRGAVPGRA 183

Query: 126 SHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNN 185
           +   A LL       +  AH      A+      P  +A FL TSG+T  PK V  T   
Sbjct: 184 ATPFAALLATPPTAAVDAAH-----AAV-----GPDTIAKFLFTSGSTGLPKAVINTHRM 233

Query: 186 LAASVSNIKSVYKLTESDSTVIV--LPLFHVHGMLAGLLSSFAAGAAVTL----PAAGRF 239
           L A+   +   +     +  V+V  LP  H  G    L      G  + +    P  G F
Sbjct: 234 LCANQQMLAQTFPFLAEEPPVLVDWLPWNHTFGGNHNLGIVLYNGGTLYIDDGKPTPGGF 293

Query: 240 SASTFWQDMIKYNATWYTAVPTIHQ---IVLDRHVAKPEPVYPKLRFIRSCSASLAPVIL 296
              T  +++ + + T Y  VP   +     L+R  A     + +L+ +    A+L+  + 
Sbjct: 294 -DETL-RNLREISPTVYFNVPKGWEMLVPALERDAALRRRFFSRLKLLFYAGAALSQDVW 351

Query: 297 SRLEEAFGA------PVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDE 349
            RL+    A       ++    MTE     +    P     + G++G P  G E+ +   
Sbjct: 352 DRLDRVAEATCGERIRMMTGLGMTETAPSATFTTGPLS---RAGNIGLPAPGCEVKL--- 405

Query: 350 IGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAF-LFGWFHTGDIGYF 397
             VP  G  K EV ++GPNVT GY   PE    AF   G++ +GD   F
Sbjct: 406 --VPVGG--KLEVRVKGPNVTPGYWRAPELTAEAFDEEGYYRSGDAVRF 450

Length = 614

>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase

 Score = 91.5 bits (228), Expect = 8e-20
 Identities = 115/444 (25%), Positives = 183/444 (41%), Gaps = 84/444 (18%)

Query: 31  LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
           +TY  +H  V R A+ L + G+  GD VA+  P   E  I  LA  R  A  + +   ++
Sbjct: 89  ITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLACARIGAIHSVVFGGFS 148

Query: 91  PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADS--ELTLSLAHSES 148
            +     ++D+ +KL++T  EG    +    K  +  A   L       E  L +  + +
Sbjct: 149 AEALADRINDAGAKLVITADEGLRGGKVIPLKAIVDEA---LEKCPVSVEHVLVVRRTGN 205

Query: 149 DTNAIS-------KLTNDPSDVA----------LF-LHTSGTTSRPKGVPLTQN--NLAA 188
               +         L    S             LF L+TSG+T +PKGV  T     L A
Sbjct: 206 PVPWVEGRDVWWHDLMAKASAYCEPEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYA 265

Query: 189 SVSNIKSVYKLTESD--------------STVIVLPLFHVHGMLAGLLSSFAAGAAVTL- 233
           +++ +K V+ + + D              S ++  PL              A GA   + 
Sbjct: 266 AMT-MKYVFDIKDGDIFWCTADVGWITGHSYIVYGPL--------------ANGATTVMF 310

Query: 234 ------PAAGRFSASTFWQDMIKYNAT-WYTAVPTIHQIVL---DRHVAKPEPVYPKLRF 283
                 P  GRF     W+ + K+  T +YTA PT  + ++   D  V K +     LR 
Sbjct: 311 EGTPTYPDPGRF-----WEIIEKHKVTIFYTA-PTAIRALMRLGDEWVKKHD--LSSLRL 362

Query: 284 IRSCSASLAPVILSRLEEAFG---APVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV 340
           + S    + P       +  G    P+++ +  TE   +M + PLP   P KPGS   P 
Sbjct: 363 LGSVGEPINPEAWMWYYKVVGKERCPIVDTWWQTETGGIMIT-PLPGATPTKPGSATLPF 421

Query: 341 -GQEIAILDEIGVPQEG-GAKGEVCIRG--PNVTKGYKNNPEANKSAFLF---GWFHTGD 393
            G E A++DE G P EG G  G + I+   P + +    + E     +     G++ TGD
Sbjct: 422 FGIEPAVVDEEGNPVEGPGEGGYLVIKQPWPGMLRTIYGDHERFVDTYFSPFPGYYFTGD 481

Query: 394 IGYFDSDGYLHLVGRIKELINRGG 417
               D DGY+ + GR+ ++IN  G
Sbjct: 482 GARRDKDGYIWITGRVDDVINVSG 505

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625

>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional

 Score = 90.4 bits (225), Expect = 2e-19
 Identities = 108/470 (22%), Positives = 183/470 (38%), Gaps = 75/470 (15%)

Query: 11  NQVIDQFSSKRALSV---SGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVE 67
             V D    +R + V   +    +TY+ + E +      L   G+  G  VA+      E
Sbjct: 99  EVVKDADGKERTMEVTHFNETRYITYAELWERIVNFGRGLAELGLTKGSNVAIYEETRWE 158

Query: 68  FVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISH 127
           ++     +      AA + A    D   + L ++E K ++   +             + +
Sbjct: 159 WLASIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVCNGKNVPNLLRLMKSGGMPN 218

Query: 128 ATATLLDA-----DSE--------LTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTS 174
            T   LD+     D+E          ++  HS    +    +  +  D+AL ++TSGTT 
Sbjct: 219 TTIIYLDSLPASVDTEGCRLVAWTDVVAKGHSAGS-HHPLNIPENNDDLALIMYTSGTTG 277

Query: 175 RPKGVPLTQNNLAASVSNIK----SVYKLTESDSTVIV-LPLFHVHGMLAGLLSSFAAGA 229
            PKGV  T  +L A +  ++     +    E D T    LPL H+  M  G+ + F A  
Sbjct: 278 DPKGVMHTHGSLTAGILALEDRLNDLIGPPEEDETYCSYLPLAHI--MEFGVTNIFLARG 335

Query: 230 AVTLPAAGRFSASTFWQ---DMIKYNATWYTAVP----TIHQIV---------LDRHV-- 271
           A+    + R    TF +   D+ ++   +   VP    TI + V         L R V  
Sbjct: 336 ALIGFGSPRTLTDTFARPHGDLTEFRPVFLIGVPRIFDTIKKAVEAKLPPVGSLKRRVFD 395

Query: 272 ------------AKPEPVY-------------PKLRFIRSCSASLAPVILSRLEEAFGAP 306
                        K  P +              ++R + S    L+      +   FG  
Sbjct: 396 HAYQSRLRALKEGKDTPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVNVVFG-M 454

Query: 307 VLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILD--EIGVPQEGGAKGEVC 363
           V++ + +TE    +    +   G  +P +VG+   G E+ +LD  E         +GE+ 
Sbjct: 455 VIQGWGLTET---VCCGGIQRTGDLEPNAVGQLLKGVEMKLLDTEEYKHTDTPEPRGEIL 511

Query: 364 IRGPNVTKGYKNNPEANKSAFLF-GWFHTGDIGYFDSDGYLHLVGRIKEL 412
           +RGP + KGY    E  +      GWFHTGD+G   ++G L ++GR+K L
Sbjct: 512 LRGPFLFKGYYKQEELTREVLDEDGWFHTGDVGSIAANGTLRIIGRVKAL 561

Length = 700

>gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP) including hsFATP2, hsFATP5, and hsFATP6, and similar proteins

 Score = 87.8 bits (218), Expect = 1e-18
 Identities = 80/329 (24%), Positives = 127/329 (38%), Gaps = 45/329 (13%)

Query: 31  LTYSRIHELVERAASRLVA-AGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAY 89
           +TY+ + +   + A  L+A AG+  GD VAL   N   F+ ++L + +     A LN   
Sbjct: 4   VTYAEVDKRSNQVARALLAHAGLKPGDTVALLLGNEPAFLWIWLGLAKLGCPTAFLNTNI 63

Query: 90  TPDEFEFYLSDSESKLLLTPAEGNAAAQA-------------AASKLNISHATATLLDAD 136
                        +++L+   E   A +                S  +      +LL   
Sbjct: 64  RSGSLLHCFRCCGARVLVADPELLEAVEEILPALRAMGVRVFYLSHTSPPEGVISLLAK- 122

Query: 137 SELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSV 196
               +  A  E    ++    +     AL+++TSGTT  PK   ++   +    S + S+
Sbjct: 123 ----VDAASDEPVPASLRSGVS-IRSTALYIYTSGTTGLPKAARISHLRVLQC-SGMLSL 176

Query: 197 YKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWY 256
             +T  D     LPL+H  G L G++     GA + L    +FSAS FW D  KYN    
Sbjct: 177 CGVTADDVVYTTLPLYHSSGALLGIVGCIGLGATLVL--KPKFSASQFWDDCRKYNV--- 231

Query: 257 TAVPTIHQIV--LDRHVA----KPEPVYPKLRFIRSCSASLAPVILSRLEEAFGA-PVLE 309
               T+ Q +  L R++            K+R   +    L P +       FG   V E
Sbjct: 232 ----TVFQYIGELLRYLCNQPQSDNDRDHKVRL--AIGNGLRPDVWREFLRRFGPIHVWE 285

Query: 310 AYAMTEATHLMSSNPLPEDGPHKPGSVGR 338
            YA TE       N    +   + G+VGR
Sbjct: 286 TYASTE------GNIGFINYTGRVGAVGR 308

Fatty acid transport proteins (FATP) of this family transport long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes hsFATP2, hsFATP5, and hsFATP6, and similar proteins. Each FATP has unique patterns of tissue distribution. These FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. The hsFATP proteins exist in two splice variants; the b variant, lacking exon 3, has no acyl-CoA synthetase activity. FATPs are key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 535

>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1

 Score = 86.7 bits (215), Expect = 2e-18
 Identities = 88/392 (22%), Positives = 155/392 (39%), Gaps = 35/392 (8%)

Query: 31  LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
           LTY ++ E  +R A+ +    +     + +        ++ FL  I++     P++ +  
Sbjct: 26  LTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSIKSGHAYIPVDTSIP 85

Query: 91  PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDT 150
            +  E  +  +  +L++      +        + +S A      +   ++   A    D 
Sbjct: 86  SERIEMIIEAAGPELVIH-TAELSIDAVGTQIITLS-ALEQAETSGGPVSFDHAVKGDDN 143

Query: 151 NAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVL- 209
             I             ++TSG+T  PKGV ++ +NL +  + + + + L+E       L 
Sbjct: 144 YYI-------------IYTSGSTGNPKGVQISHDNLVSFTNWMLADFPLSEG---KQFLN 187

Query: 210 -PLFHVHGMLAGLLSSFAAGAA-VTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQI-V 266
              F     +  L    A+G     L      +    ++++ K     + + P+   + +
Sbjct: 188 QAPFSFDLSVMDLYPCLASGGTLHCLDKDITNNFKLLFEELPKTGLNVWVSTPSFVDMCL 247

Query: 267 LDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVLEAYAMTEATHLMSS--- 322
           LD +  +    YP L     C   L       L E F  A +   Y  TEAT  ++S   
Sbjct: 248 LDPNFNQEN--YPHLTHFLFCGEELPVKTAKALLERFPKATIYNTYGPTEATVAVTSVKI 305

Query: 323 -NPLPEDGPHKPGSVGRPVGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANK 381
              + +  P  P    +P    + I+DE G P   G KGE+ I GP+V+KGY NNPE   
Sbjct: 306 TQEILDQYPRLPIGFAKP-DMNLFIMDEEGEPLPEGEKGEIVIVGPSVSKGYLNNPEKTA 364

Query: 382 SAFLFG----WFHTGDIGYFDSDGYLHLVGRI 409
            AF        + TGD G   +DG L   GR+
Sbjct: 365 EAFFSHEGQPAYRTGDAGTI-TDGQLFYQGRL 395

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502

>gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional

 Score = 86.9 bits (216), Expect = 2e-18
 Identities = 76/285 (26%), Positives = 114/285 (40%), Gaps = 44/285 (15%)

Query: 159 DPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGML 218
            P D+A  L TSG+T  PKGV  T     A +  ++  Y +   +  +   PLF + G  
Sbjct: 172 APDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDYGIEPGEIDLPTFPLFALFGPA 231

Query: 219 AGLLS-----SFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAK 273
            G+ S          A V  PA         +  + +Y  T     P + + +     A 
Sbjct: 232 LGMTSVIPDMDPTRPATVD-PAK-------LFAAIERYGVTNLFGSPALLERLGRYGEAN 283

Query: 274 PEPVYPKLRFIRSCSASLAPVILSRLEEAF--GAPVLEAYAMTEA---------THLMSS 322
              + P LR + S  A +   ++ R        A +L  Y  TEA           L ++
Sbjct: 284 GIKL-PSLRRVISAGAPVPIAVIERFRAMLPPDAEILTPYGATEALPISSIESREILFAT 342

Query: 323 NPLPEDGPHKPGS-VGRPV-GQEIAI--LDEIGVPQEGGAK-------GEVCIRGPNVTK 371
               ++G    G  VGRPV G E+ I  + +  +P+   A        GE+ + GP VT+
Sbjct: 343 RAATDNGA---GICVGRPVDGVEVRIIAISDAPIPEWDDALRLATGEIGEIVVAGPMVTR 399

Query: 372 GYKNNPEANKSAFLFG-----WFHTGDIGYFDSDGYLHLVGRIKE 411
            Y N PEA + A +       W   GD+GY D+ G L   GR   
Sbjct: 400 SYYNRPEATRLAKIPDGQGDVWHRMGDLGYLDAQGRLWFCGRKAH 444

Length = 552

>gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase

 Score = 86.8 bits (215), Expect = 3e-18
 Identities = 103/462 (22%), Positives = 176/462 (38%), Gaps = 101/462 (21%)

Query: 31  LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
           LTY  +++   R  S + + G+N GD   +   N  E++I   A      T  PL     
Sbjct: 78  LTYKEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQGITYVPLYDTLG 137

Query: 91  PDEFEFYLSDSESKLLLTPAEGNAAAQAAASK--------LNISHATATLLDADSELTLS 142
            +  EF ++ +E  +        ++  +   K        ++    ++   +   EL +S
Sbjct: 138 ANAVEFIINHAEVSIAFVQESKISSILSCLPKCSSNLKTIVSFGDVSSEQKEEAEELGVS 197

Query: 143 LAHSESDTNAISKLTNDP----SDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYK 198
               E  +   S     P    +D+   ++TSGTT  PKGV LT   + A V +   + K
Sbjct: 198 CFSWEEFSLMGSLDCELPPKQKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLLK 257

Query: 199 LT-----ESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKY-- 251
           +T     E DS    LPL HV+  +       + GA++            FWQ  I+Y  
Sbjct: 258 VTDRVATEEDSYFSYLPLAHVYDQVIETYC-ISKGASIG-----------FWQGDIRYLM 305

Query: 252 ------NATWYTAVP---------TIHQIVLDRHVAKPEPVYP---KLRFIR------SC 287
                   T +  VP          + +I     + K    +    KL  +R        
Sbjct: 306 EDVQALKPTIFCGVPRVYDRIYTGIMQKISSGGMLRKKLFDFAYNYKLGNLRKGLKQEEA 365

Query: 288 SASLAPVILSRLEEAFG----------AP----------------VLEAYAMTEA----- 316
           S  L  ++  +++E  G          AP                + + Y +TE+     
Sbjct: 366 SPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEEFLRVTSCSVLSQGYGLTESCGGCF 425

Query: 317 THLMSSNPLPEDGPHKPGSVGRPVGQEIAILDEIGVPQEGG------AKGEVCIRGPNVT 370
           T + +   +        G+VG P+    A L+   VP+ G        +GE+C+RG  + 
Sbjct: 426 TSIANVFSMV-------GTVGVPMTTIEARLES--VPEMGYDALSDVPRGEICLRGNTLF 476

Query: 371 KGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKEL 412
            GY    +  +   + GWFHTGDIG +  +G + ++ R K +
Sbjct: 477 SGYHKRQDLTEEVLIDGWFHTGDIGEWQPNGAMKIIDRKKNI 518

Length = 660

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 87.1 bits (216), Expect = 4e-18
 Identities = 109/433 (25%), Positives = 175/433 (40%), Gaps = 57/433 (13%)

Query: 3    GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTF 62
               L  LLN+   Q   + AL V     L Y+ +H    R A  L   G+     VA+  
Sbjct: 1130 QAWLPELLNEQARQTPERIAL-VWDGGSLDYAELHAQANRLAHYLRDKGVGPDVCVAIAA 1188

Query: 63   PNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASK 122
              + + ++  LA+++A     PL+  Y  +   + L+DS  +LLLT              
Sbjct: 1189 ERSPQLLVGLLAILKAGGAYVPLDPDYPAERLAYMLADSGVELLLTQ------------- 1235

Query: 123  LNISHATATLLDADSELTLSLA--HSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVP 180
               SH    L  A+    ++L   H +S  +    L     ++A  ++TSG+T +PKGV 
Sbjct: 1236 ---SHLLERLPQAEGVSAIALDSLHLDSWPSQAPGLHLHGDNLAYVIYTSGSTGQPKGVG 1292

Query: 181  LTQNNLAASVSNIKSVYKLTESDSTVIVLPL-FHVHGMLAGLLSSF---AAGAAVTLPAA 236
             T   LA  +  +++ Y L +SD  +   P+ F V      +   F     G  + L   
Sbjct: 1293 NTHAALAERLQWMQATYALDDSDVLMQKAPISFDV-----SVWECFWPLITGCRLVLAGP 1347

Query: 237  GRF-SASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYP---KLRFIRSCSASLA 292
            G         + + +Y  T    VP + Q+ +D      EP+      LR + S   +L 
Sbjct: 1348 GEHRDPQRIAELVQQYGVTTLHFVPPLLQLFID------EPLAAACTSLRRLFSGGEALP 1401

Query: 293  PVILSRLEEAFGAPVLE-AYAMTEA----THLMSSNPLPEDGPHKPGSVGRPVGQEIA-I 346
              + +R+ +      L   Y  TE     TH        EDG   P  +GRP+G  +  +
Sbjct: 1402 AELRNRVLQRLPQVQLHNRYGPTETAINVTHWQCQ---AEDGERSP--IGRPLGNVLCRV 1456

Query: 347  LDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFL---FG-----WFHTGDIGYFD 398
            LD        G  GE+CI G  + +GY   P      F+    G      + TGD   ++
Sbjct: 1457 LDAELNLLPPGVAGELCIGGAGLARGYLGRPALTAERFVPDPLGEDGARLYRTGDRARWN 1516

Query: 399  SDGYLHLVGRIKE 411
            +DG L  +GR+ +
Sbjct: 1517 ADGALEYLGRLDQ 1529

Length = 4334

>gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated

 Score = 86.0 bits (213), Expect = 4e-18
 Identities = 92/392 (23%), Positives = 158/392 (40%), Gaps = 32/392 (8%)

Query: 31  LTYSRIHELVERAASRLVA-AGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAY 89
           LTY    E V + A+ L      N    +A+   N +EF+ +F     A  T  PL+  +
Sbjct: 27  LTYKDWFESVCKVANWLNEKESKN--KTIAILLENRIEFLQLFAGAAMAGWTCVPLDIKW 84

Query: 90  TPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLN-ISHATATLLDADSELTLSLAHSES 148
             DE +  L+ S + +++T             KLN +      +++ D      +     
Sbjct: 85  KQDELKERLAISNADMIVT----------ERYKLNDLPDEEGRVIEIDE--WKRMIEKYL 132

Query: 149 DTNAISKLTNDPSDVALFL-HTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVI 207
            T A      +  +   ++  TSG+T +PK     Q +   S       + +   DS +I
Sbjct: 133 PTYAP---IENVQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVHDFHMKREDSVLI 189

Query: 208 VLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVL 267
              L H    L G +S+   G  V L    +F  +     +   N +    VPT+    L
Sbjct: 190 AGTLVHSL-FLYGAISTLYVGQTVHL--MRKFIPNQVLDKLETENISVMYTVPTM----L 242

Query: 268 DRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVLEAYAMTEATHLMSSNPLP 326
           +    +   +  K++ I S  A        +++  F  A + E Y  +E + + +     
Sbjct: 243 ESLYKENRVIENKMKIISS-GAKWEAEAKEKIKNIFPYAKLYEFYGASELSFVTALVD-- 299

Query: 327 EDGPHKPGSVGRPVGQ-EIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFL 385
           E+   +P SVGRP    ++ I +E G   + G  G V ++ P    GY       +    
Sbjct: 300 EESERRPNSVGRPFHNVQVRICNEAGEEVQKGEIGTVYVKSPQFFMGYIIGGVLARELNA 359

Query: 386 FGWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
            GW    D+GY D +G++++VGR K +I  GG
Sbjct: 360 DGWMTVRDVGYEDEEGFIYIVGREKNMILFGG 391

Length = 487

>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)

 Score = 85.6 bits (212), Expect = 5e-18
 Identities = 99/390 (25%), Positives = 146/390 (37%), Gaps = 60/390 (15%)

Query: 32  TYSRIHELVERAASRLVAA-GINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
           TY  + +   R A  LV   G+  G+ V L   NT   V  +LAV++A A          
Sbjct: 62  TYQDLLDRANRIAHVLVEDLGVVPGNRVLLRSANTPMLVACWLAVLKAGAIVVTTMPLLR 121

Query: 91  PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDT 150
             E    +  +                       I+HA       D  LT +        
Sbjct: 122 AKELTTIVDKAR----------------------ITHALC-----DKRLTAA-------- 146

Query: 151 NAISKLTNDPSDVALFLHTSGTTSRPKG-VPLTQNNLAASVSNIKSVYKLTESDSTVIVL 209
                      DVAL   TSGTT  PKG +   ++ LA   +  + V + T  D  +   
Sbjct: 147 ----------DDVALIGFTSGTTGLPKGTMHFHRDILAICDAFPRHVLQPTPDDVFIGSP 196

Query: 210 PLFHVHGMLAGLLSSFAAGA-AVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLD 268
           PL    G+   +L     GA AV L  A   +     + + ++ AT     PT ++ +L 
Sbjct: 197 PLAFTFGLGGLVLFPLRFGASAVLLEQA---TPPLLLKAIQEHRATILFTAPTAYRAMLI 253

Query: 269 RHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPED 328
                       LR   S   +L   +     E  G  +++    TE  H+  S     +
Sbjct: 254 ---KVKAFDISSLRKCVSAGETLPAKVWQDWYERTGLKIIDGIGATEMLHIFISA---NE 307

Query: 329 GPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFG 387
              KPG+ G+PV G E  I+D+ G     G  G + +RGP   + Y ++    +     G
Sbjct: 308 ENAKPGATGKPVPGYEARIVDDQGNEVPRGEAGRLAVRGPTGCR-YLDDER-QQEYVRDG 365

Query: 388 WFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
           W  TGDI   D DGY H V R  ++I   G
Sbjct: 366 WNVTGDIFRQDEDGYFHYVARSDDMIVSAG 395

ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487

>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional

 Score = 83.9 bits (208), Expect = 3e-17
 Identities = 84/293 (28%), Positives = 120/293 (40%), Gaps = 62/293 (21%)

Query: 158  NDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGM 217
             DP D A+ L TSG+   PKGV L+  NL A+ + + +    +  D     LP+FH  G+
Sbjct: 790  RDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARIDFSPEDKVFNALPVFHSFGL 849

Query: 218  LAGLLSSFAAGAAVTL---PAAGR--------------FSASTFWQDMIKYNATWYTAVP 260
              GL+    +G  V L   P   R              F   TF     +Y         
Sbjct: 850  TGGLVLPLLSGVKVFLYPSPLHYRIIPELIYDTNATILFGTDTFLNGYARY--------- 900

Query: 261  TIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLM 320
                       A P      LR++ + +  +         E FG  +LE Y +TE   ++
Sbjct: 901  -----------AHPYDFR-SLRYVFAGAEKVKEETRQTWMEKFGIRILEGYGVTETAPVI 948

Query: 321  SSN-PLPEDGPH-KPGSVGRPVGQEIAILDEI-GVPQEGGAKGEVCIRGPNVTKGY--KN 375
            + N P+     H K G+VGR +      L+ + G+  EGG    + +RGPNV  GY    
Sbjct: 949  ALNTPM-----HNKAGTVGRLLPGIEYRLEPVPGID-EGG---RLFVRGPNVMLGYLRAE 999

Query: 376  NP---EANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISL 425
            NP   E        GW+ TGDI   D +G++ + GR K      G   E ISL
Sbjct: 1000 NPGVLEPPAD----GWYDTGDIVTIDEEGFITIKGRAKRFAKIAG---EMISL 1045

Length = 1140

>gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase

 Score = 82.6 bits (204), Expect = 8e-17
 Identities = 108/443 (24%), Positives = 167/443 (37%), Gaps = 74/443 (16%)

Query: 31  LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
           LTYS + + V + A+ L   G+  GD V +  P  +E  I  LA  R  A  + + A ++
Sbjct: 121 LTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAMLACARIGAVHSVVFAGFS 180

Query: 91  PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATL----LDADSELTL--SLA 144
            +     + D + K+++T        +    K  +  A        +     LT    LA
Sbjct: 181 AESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYENQLA 240

Query: 145 HSESDT-----------NAISKLTN-------DPSDVALFLHTSGTTSRPKGVPLTQNN- 185
               DT           + +            D  D    L+TSG+T +PKGV  T    
Sbjct: 241 MKREDTKWQEGRDVWWQDVVPNYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGY 300

Query: 186 LAASVSNIKSVYKLTESD--------------STVIVLPLFHVHGMLAGLLSSFAAGAAV 231
           +  + +  K  +    +D              S V   P      ML G       GA  
Sbjct: 301 MVYTATTFKYAFDYKPTDVYWCTADCGWITGHSYVTYGP------MLNGATVLVFEGAP- 353

Query: 232 TLPAAGRFSASTFWQDMIKYNAT-WYTAVPTIHQIVLD------RHVAKPEPVYPKLRFI 284
             P +GR      W  + KY  T +YTA   +  ++ D      RH  K       LR +
Sbjct: 354 NYPDSGRC-----WDIVDKYKVTIFYTAPTLVRSLMRDGDEYVTRHSRK------SLRVL 402

Query: 285 RSCSASLAPVILSRLEEAFG---APVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV- 340
            S    + P          G    P+ + +  TE    M + PLP   P KPGS   P  
Sbjct: 403 GSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMIT-PLPGAWPQKPGSATFPFF 461

Query: 341 GQEIAILDEIGVPQEGGAKGEVCIRG--PNVTKGYKNNPEANKSAFL---FGWFHTGDIG 395
           G +  I+DE G   EG   G +C++   P   +    + E  ++ +     G++ +GD  
Sbjct: 462 GVQPVIVDEKGKEIEGECSGYLCVKKSWPGAFRTLYGDHERYETTYFKPFAGYYFSGDGC 521

Query: 396 YFDSDGYLHLVGRIKELINRGGN 418
             D DGY  L GR+ ++IN  G+
Sbjct: 522 SRDKDGYYWLTGRVDDVINVSGH 544

Length = 666

>gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional

 Score = 82.4 bits (204), Expect = 8e-17
 Identities = 103/420 (24%), Positives = 174/420 (41%), Gaps = 59/420 (14%)

Query: 31  LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
           +TY      V+  A  L+  G++ G  V +   N++E  +M LA ++A   AAP++ AY+
Sbjct: 81  VTYGEAKRAVDALAQALLDLGLDPGRPVMILSGNSIEHALMTLAAMQAGVPAAPVSPAYS 140

Query: 91  PDEFEFYLSDSESKL-----LLTP----AEGNAAAQAAASKLNISHATATLLDADSELTL 141
                  +S   +KL     L+ P    A+  A    A + L++   T   +    E   
Sbjct: 141 ------LMSHDHAKLKHLFDLVKPRVVFAQSGAPFARALAALDLLDVTVVHVTGPGEGIA 194

Query: 142 SLAHSESDTN--------AISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNI 193
           S+A ++            AI+ +T  P  VA +L TSG+T  PK V  TQ  + A+++  
Sbjct: 195 SIAFADLAATPPTAAVAAAIAAIT--PDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQ 252

Query: 194 KSVYKLTESDSTVIVL---PLFHVHGMLAGLLSSFAAGAAVTL----PAAGRFSASTFWQ 246
           + +          + L   P  H  G  A        G  + +    P  G F  +   +
Sbjct: 253 EQLRPREPDPPPPVSLDWMPWNHTMGGNANFNGLLWGGGTLYIDDGKPLPGMFEETI--R 310

Query: 247 DMIKYNATWYTAVPTIHQIV---LDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEE-- 301
           ++ + + T Y  VP  + ++   +++  A     +  LR +    A+L+  +  R++   
Sbjct: 311 NLREISPTVYGNVPAGYAMLAEAMEKDDALRRSFFKNLRLMAYGGATLSDDLYERMQALA 370

Query: 302 --AFGA--PVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEG 356
               G   P    Y  TE     +          + G +G P+ G E+ +      P   
Sbjct: 371 VRTTGHRIPFYTGYGATETAPTTTGTHWD---TERVGLIGLPLPGVELKL-----APV-- 420

Query: 357 GAKGEVCIRGPNVTKGYKNNPEANKSAF-LFGWFHTGDIGYF--DSDGYLHLV--GRIKE 411
           G K EV ++GPNVT GY  +PE   +AF   G++  GD   F    D    L+  GR+ E
Sbjct: 421 GDKYEVRVKGPNVTPGYHKDPELTAAAFDEEGFYRLGDAARFVDPDDPEKGLIFDGRVAE 480

Length = 624

>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase

 Score = 80.4 bits (198), Expect = 3e-16
 Identities = 108/460 (23%), Positives = 168/460 (36%), Gaps = 98/460 (21%)

Query: 32  TYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTP 91
           TY  ++++V +  + L + G+       +   N+ E++I   A         PL      
Sbjct: 81  TYQEVYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEACNAHGLYCVPLYDTLGA 140

Query: 92  DEFEFYLSDSE-----------SKLLLTPAEGNAAAQAAASKLNISHA------TATLLD 134
              EF +S SE           S+L  T        +   S   +S        T  L+ 
Sbjct: 141 GAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGGVSREQKEEAETFGLVI 200

Query: 135 ADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIK 194
              +  L L   +     I K     SD+   ++TSGTT  PKGV ++  ++   ++ + 
Sbjct: 201 YAWDEFLKLGEGKQYDLPIKK----KSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVI 256

Query: 195 SVYK-----LTESDSTVIVLPLFHVHGMLAGLLSSF-AAGAAVTLPAAGRFSASTFWQDM 248
            + K     LT  D  +  LPL H+   +  +   F   GAA+      R       +D+
Sbjct: 257 RLLKSANAALTVKDVYLSYLPLAHIFDRV--IEECFIQHGAAIGF---WRGDVKLLIEDL 311

Query: 249 IKYNATWYTAVPTIHQIVLDR------------------------------------HVA 272
            +   T + AVP     VLDR                                    HV 
Sbjct: 312 GELKPTIFCAVPR----VLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGNMKKGQSHVE 367

Query: 273 KPEPVYPKL-------------RFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEA-TH 318
              P+  KL             R I S +A LA  + S L       VL+ Y +TE+   
Sbjct: 368 A-SPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTESCAG 426

Query: 319 LMSSNPLPEDGPHKPGSVGRPVGQEIAILDEIGVPQ------EGGAKGEVCIRGPNVTKG 372
              S P   D     G+VG PV      L+   VP+          +GE+CIRG  +  G
Sbjct: 427 TFVSLP---DELDMLGTVGPPVPNVDIRLES--VPEMEYDALASTPRGEICIRGKTLFSG 481

Query: 373 YKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKEL 412
           Y    +  K   + GW HTGD+G +  +G + ++ R K +
Sbjct: 482 YYKREDLTKEVLIDGWLHTGDVGEWQPNGSMKIIDRKKNI 521

Length = 666

>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 79.1 bits (196), Expect = 7e-16
 Identities = 93/432 (21%), Positives = 150/432 (34%), Gaps = 131/432 (30%)

Query: 16  QFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAV 75
                 AL ++ +  LT+ ++   +++ A+     G+  G  VAL   N+ E ++ +LA+
Sbjct: 15  VRPQAIALRLNDE-VLTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLAL 73

Query: 76  IRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDA 135
           ++  A   PLN               +  L           +     L +  A    L  
Sbjct: 74  LQCGARVLPLNPQLP-----------QPLL-----------EELLPSLTLDFA----LVL 107

Query: 136 DSELTLSL--AHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNI 193
           + E T S   +           +   P  +A    TSG+T  PK    T     AS   +
Sbjct: 108 EGENTFSALTSLHLQLVEGAHAVAWQPQRLATMTLTSGSTGLPKAAVHTAQAHLASAEGV 167

Query: 194 KSVYKLTESDSTVIVLPLFHVHGMLAGLLSSF-AAGAAVTLPAAGRFSASTFWQDMIKYN 252
            S+   T  DS ++ LPLFHV G   G++  +  AGA + +        +          
Sbjct: 168 LSLMPFTAQDSWLLSLPLFHVSGQ--GIVWRWLYAGATLVVRDKQPLEQA---------- 215

Query: 253 ATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCS-ASLAPVILSRLEEAFGAPV---- 307
                                          +  C+ ASL P  L RL +    P+    
Sbjct: 216 -------------------------------LAGCTHASLVPTQLWRLLDNRSEPLSLKA 244

Query: 308 ---------------LEA--------YAMTEATHLMSSN--PLPEDGPHKPGSVGRPV-G 341
                           E         Y +TE    M+S       DG    G VG P+ G
Sbjct: 245 VLLGGAAIPVELTEQAEQQGIRCWCGYGLTE----MASTVCAKRADG--LAG-VGSPLPG 297

Query: 342 QEIAILDEIGVPQEGGAKGEVCIRGPNVTKGY----KNNPEANKSAFLFGWFHTGDIGYF 397
           +E+ ++D           GE+ +RG ++  GY    +  P  N      GWF T D G +
Sbjct: 298 REVKLVD-----------GEIWLRGASLALGYWRQGQLVPLVNDE----GWFATRDRGEW 342

Query: 398 DSDGYLHLVGRI 409
             +G L ++GR+
Sbjct: 343 Q-NGELTILGRL 353

Length = 458

>gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP), including FATP4 and FATP1, and similar proteins

 Score = 78.6 bits (194), Expect = 9e-16
 Identities = 56/230 (24%), Positives = 90/230 (39%), Gaps = 44/230 (19%)

Query: 31  LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
            T+  ++E   + A+   A G  +GDVVAL   N +EFV ++L + +     A +N+   
Sbjct: 4   WTFRELNEYSNKVANFFQAQGYRSGDVVALFMENRLEFVALWLGLAKIGVETALINS--- 60

Query: 91  PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATA------TLLDADSELTLSLA 144
                                 N   ++    + +S A A        L   S       
Sbjct: 61  ----------------------NLRLESLLHCITVSKAKALIFNLLDPLLTQSSTEPP-- 96

Query: 145 HSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDS 204
            S+ D N   KL         +++TSGTT  PK   +  +      +     + +   D 
Sbjct: 97  -SQDDVNFRDKL--------FYIYTSGTTGLPKAAVIVHSRYYRIAAGAYYAFGMRPEDV 147

Query: 205 TVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNAT 254
               LPL+H  G + G+  +   G+ V +    +FSAS FW D +KYN T
Sbjct: 148 VYDCLPLYHSAGGIMGVGQALLHGSTVVIRK--KFSASNFWDDCVKYNCT 195

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes FATP4, FATP1, and homologous proteins. Each FATP has unique patterns of tissue distribution. FATP4 is mainly expressed in the brain, testis, colon and kidney. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 474

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 79.4 bits (196), Expect = 1e-15
 Identities = 109/405 (26%), Positives = 172/405 (42%), Gaps = 37/405 (9%)

Query: 22   ALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARAT 81
            AL+ +G+  L+Y+ +     R A  L   G+     V L    ++E V+  LA+++A   
Sbjct: 2206 ALTFAGQ-TLSYAELDARANRLARALRERGVGPQVRVGLALERSLEMVVGLLAILKAGGA 2264

Query: 82   AAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTL 141
              PL+  Y  +   + + DS   LLL     + A   A  +L    A   L D  + L  
Sbjct: 2265 YVPLDPEYPLERLHYMIEDSGIGLLL----SDRALFEALGELPAGVARWCLEDDAAALA- 2319

Query: 142  SLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTE 201
              A+S++    +S     P   A  ++TSG+T +PKGV ++   +A     +   + +  
Sbjct: 2320 --AYSDAPLPFLSL----PQHQAYLIYTSGSTGKPKGVVVSHGEIAMHCQAVIERFGMRA 2373

Query: 202  SDSTVIVLPLFHVHGMLAG--LLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAV 259
             D     L  + ++   A   LL     GA V L A G++ A    Q + +   +     
Sbjct: 2374 DDCE---LHFYSINFDAASERLLVPLLCGARVVLRAQGQWGAEEICQLIREQQVSILGFT 2430

Query: 260  PTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVL--EAYAMTEAT 317
            P+ +   L + +A      P +R   +   +L    L R+ +AF AP L   AY  TE  
Sbjct: 2431 PS-YGSQLAQWLAGQGEQLP-VRMCITGGEALTGEHLQRIRQAF-APQLFFNAYGPTETV 2487

Query: 318  HLMSSNPLPEDGPHKPGSV--GRPVGQEIA-ILDE--IGVPQEGGAKGEVCIRGPNVTKG 372
             +  +   PE       SV  GR VG  +A ILD     VPQ  GA GE+ + G  + +G
Sbjct: 2488 VMPLACLAPEQLEEGAASVPIGRVVGARVAYILDADLALVPQ--GATGELYVGGAGLAQG 2545

Query: 373  YKNNPEANKSAFLFGWF--------HTGDIGYFDSDGYLHLVGRI 409
            Y + P      F+   F         TGD+    +DG +  VGRI
Sbjct: 2546 YHDRPGLTAERFVADPFAADGGRLYRTGDLVRLRADGLVEYVGRI 2590

Length = 4334

>gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase

 Score = 78.3 bits (193), Expect = 2e-15
 Identities = 112/460 (24%), Positives = 181/460 (39%), Gaps = 96/460 (20%)

Query: 32  TYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTP 91
           TY  ++E V +  S L A+G   G  V +   N  ++++   A         PL     P
Sbjct: 78  TYKEVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEACAAHSLICVPLYDTLGP 137

Query: 92  DEFEF----------YLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTL 141
              ++          ++ D + K LL P     +A+   + ++ +  T    D  S++ +
Sbjct: 138 GAVDYIVDHAEIDFVFVQDKKIKELLEP--DCKSAKRLKAIVSFTSVTEEESDKASQIGV 195

Query: 142 SL----------AHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVS 191
                         + S+TN        P D+   ++TSGT+  PKGV LT   +A  V 
Sbjct: 196 KTYSWIDFLHMGKENPSETNP-----PKPLDICTIMYTSGTSGDPKGVVLTHEAVATFVR 250

Query: 192 NIKSVY-----KLTESDSTVIVLPLFHVHGMLAGLLSS--FAAGAAVTLPAAGRFSASTF 244
            +         K+T  D  +  LPL H+   L  ++    F  GA+V     G  +A   
Sbjct: 251 GVDLFMEQFEDKMTHDDVYLSFLPLAHI---LDRMIEEYFFRKGASVGY-YHGDLNA--L 304

Query: 245 WQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFI-------------RSCSASL 291
             D+++   T    VP + + + +      + + P+ R I             R  S   
Sbjct: 305 RDDLMELKPTLLAGVPRVFERIHEGIQKALQELNPRRRLIFNALYKYKLAWMNRGYSHKK 364

Query: 292 APVILS---------------RLEEAFGAP----------------VLEAYAMTEATHLM 320
           A  +                 RL  + GAP                V++ Y +TE T   
Sbjct: 365 ASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFLRVTSCAFVVQGYGLTE-TLGP 423

Query: 321 SSNPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEG------GAKGEVCIRGPNVTKGY 373
           ++   P++     G+VG P V  E+  L+E  VP+ G        +GE+C+RG  +  GY
Sbjct: 424 TTLGFPDEMCML-GTVGAPAVYNELR-LEE--VPEMGYDPLGEPPRGEICVRGKCLFSGY 479

Query: 374 KNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELI 413
             NPE  +     GWFHTGDIG    +G L ++ R K LI
Sbjct: 480 YKNPELTEEVMKDGWFHTGDIGEILPNGVLKIIDRKKNLI 519

Length = 660

>gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

 Score = 76.3 bits (188), Expect = 6e-15
 Identities = 78/286 (27%), Positives = 118/286 (41%), Gaps = 37/286 (12%)

Query: 159 DPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIV----LPLFHV 214
           D    A+   T+G+T  P+   L+     A +SN++ +      D+   V    LPL+H 
Sbjct: 150 DSGGPAVLQGTAGSTGTPRTAILSP---GAVLSNLRGLNARVGLDAATDVGCSWLPLYHD 206

Query: 215 HGMLAGLLSSFAAGAAVTLPAAGRFSASTF-WQDMIKYNATWYTAVPTIHQIVLDRHVAK 273
            G LA LL++  AGA + L     FSAS F W   +  +    TA P     ++ ++  +
Sbjct: 207 MG-LAFLLTAALAGAPLWLAPTTAFSASPFRWLSWLSDSRATLTAAPNFAYNLIGKYARR 265

Query: 274 PEPV-YPKLRFIRSCSASLAPVILSRLEEA---FG---APVLEAYAMTEATHLMSSNPLP 326
              V    LR   +    +      R   A   FG        +Y + E+T  ++  P+P
Sbjct: 266 VSDVDLGALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSYGLAESTCAVTV-PVP 324

Query: 327 EDG-------------PHKPGSVGRPV-GQEIAILDEIGVPQEGGAK-GEVCIRGPNVTK 371
             G               +   +G P+ G E+ I    G     G + GE+ IRG ++  
Sbjct: 325 GIGLRVDEVTTDDGSGARRHAVLGNPIPGMEVRISPGDGAAGVAGREIGEIEIRGASMMS 384

Query: 372 GYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
           GY      +       WF TGD+GY   DG L + GR KELI   G
Sbjct: 385 GYLGQAPIDPD----DWFPTGDLGYL-VDGGLVVCGRAKELITVAG 425

Length = 525

>gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated

 Score = 76.2 bits (187), Expect = 8e-15
 Identities = 88/383 (22%), Positives = 157/383 (40%), Gaps = 42/383 (10%)

Query: 31  LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPL-NAAY 89
           +T+ +IH+   R    L   G+++GD V L  P++ + V + LA + AR   A L N   
Sbjct: 31  VTHGQIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLLACL-ARGVMAFLANPEL 89

Query: 90  TPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESD 149
             D+      ++E  L++T           +  L      + + +A   ++ +   +   
Sbjct: 90  HRDDHALAARNTEPALVVT-----------SDALRDRFQPSRVAEAAELMSEAARVAPGG 138

Query: 150 TNAISKLTNDPSDVALF-LHTSGTTSRPKGVPLTQNNLAASVSNI-KSVYKLTESDSTVI 207
              +        D   +  +TSGTT  PK       +    V  + +   +LT  D+ + 
Sbjct: 139 YEPMG------GDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKALRLTPEDTGLC 192

Query: 208 VLPLFHVHGMLAGLLSSFAAGAAV---TLPAAGRFSA--STFWQDMIKYNATWYTAVPTI 262
              ++  +G+   +    A G +    + P     +A  S  +   + Y       VP  
Sbjct: 193 SARMYFAYGLGNSVWFPLATGGSAVINSAPVTPEAAAILSARFGPSVLY------GVPNF 246

Query: 263 HQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGA-PVLEAYAMTEATHLMS 321
              V+D   +     +  LR + S   +L   +  RL E FG  P+L+    TE      
Sbjct: 247 FARVID---SCSPDSFRSLRCVVSAGEALELGLAERLMEFFGGIPILDGIGSTEVGQTFV 303

Query: 322 SNPLPEDGPHKPGSVGRPVGQ-EIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEAN 380
           SN + E    + G++GR +   EI ++   G     G +G++ +RGP + KGY N P++ 
Sbjct: 304 SNRVDE---WRLGTLGRVLPPYEIRVVAPDGTTAGPGVEGDLWVRGPAIAKGYWNRPDSP 360

Query: 381 KSAFLFGWFHTGDIGYFDSDGYL 403
            +    GW  T D    DSDG++
Sbjct: 361 VAN--EGWLDTRDRVCIDSDGWV 381

Length = 705

>gnl|CDD|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional

 Score = 75.9 bits (187), Expect = 9e-15
 Identities = 121/502 (24%), Positives = 185/502 (36%), Gaps = 110/502 (21%)

Query: 3   GVTLIGLLNQVIDQFS---SKRALSVSGKFD-----LTYSRIHELVERAASRL--VAAGI 52
           G TLI L+ + I       + R L  S         LT++++   +    +RL  VA   
Sbjct: 33  GTTLISLIERNIANVGDTVAYRYLDHSHSAAGCAVELTWTQLGVRLRAVGARLQQVAG-- 90

Query: 53  NAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTP---DEFEFYLSDSESKLLLTP 109
             GD VA+  P  +++V  F A I+A   A PL A   P   +  +  L D+E  ++LT 
Sbjct: 91  -PGDRVAILAPQGIDYVAGFFAAIKAGTIAVPLFAPELPGHAERLDTALRDAEPTVVLTT 149

Query: 110 AEGNAAAQAAASKL-NISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLH 168
               AAA+A    L N+       + A   +  S   S            D  DV+   +
Sbjct: 150 T---AAAEAVEGFLRNLPRLRRPRVIAIDAIPDSAGESFVPVEL------DTDDVSHLQY 200

Query: 169 TSGTTSRPKGVPLTQNNLAASVSN-IKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAA 227
           TSG+T  P GV +T   +  ++   I S+  L  +   V  LPL+H  G+    +  F A
Sbjct: 201 TSGSTRPPVGVEITHRAVGTNLVQMILSIDLLDRNTHGVSWLPLYHDMGL---SMIGFPA 257

Query: 228 --GAAVTLPAAGRFSASTF-WQDMIKYNATW---YTAVPTI-HQIVLDRHVAKP------ 274
             G   TL +   F      W   +   +      TA P   ++    R +         
Sbjct: 258 VYGGHSTLMSPTAFVRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQRGLPAEGDDIDL 317

Query: 275 ---------EPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSS--- 322
                    EPV      + + + + AP  L R           +Y + EAT  +++   
Sbjct: 318 SNVVLIIGSEPVSIDA--VTTFNKAFAPYGLPR------TAFKPSYGIAEATLFVATIAP 369

Query: 323 -------------------NPLPEDGPHKP-----GSVGRPVGQEIAILDE-IGVPQEGG 357
                                +  D P+       G V R   Q   I+D   G     G
Sbjct: 370 DAEPSVVYLDREQLGAGRAVRVAADAPNAVAHVSCGQVAR--SQWAVIVDPDTGAELPDG 427

Query: 358 AKGEVCIRGPNVTKGYKNNPE-------------------ANKSAFLFGWFHTGDIGYFD 398
             GE+ + G N+ +GY   PE                   A+ +A    W  TGD+G + 
Sbjct: 428 EVGEIWLHGDNIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAADDGTWLRTGDLGVY- 486

Query: 399 SDGYLHLVGRIKELINRGGNLH 420
            DG L++ GRI +LI   G  H
Sbjct: 487 LDGELYITGRIADLIVIDGRNH 508

Length = 612

>gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

 Score = 74.5 bits (184), Expect = 2e-14
 Identities = 48/127 (37%), Positives = 59/127 (46%), Gaps = 25/127 (19%)

Query: 299 LEEAF-GAPVLEAYAMTEATHLMSS-----------NPLPEDGPHKPGSVGRPVGQEIAI 346
           L E F  A +   Y  TEAT  ++S             LP  G  KP S        + I
Sbjct: 280 LLERFPSATIYNTYGPTEATVAVTSIEITDEMLDQYKRLPI-GYAKPDS-------PLLI 331

Query: 347 LDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF----GWFHTGDIGYFDSDGY 402
           +DE G     G +GE+ I GP+V+KGY NNPE    AF        +HTGD GY + DG 
Sbjct: 332 IDEEGTKLPDGEQGEIVISGPSVSKGYLNNPEKTAEAFFTFDGQPAYHTGDAGYLE-DGL 390

Query: 403 LHLVGRI 409
           L   GRI
Sbjct: 391 LFYQGRI 397

Length = 503

>gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score = 73.6 bits (180), Expect = 4e-14
 Identities = 93/408 (22%), Positives = 156/408 (38%), Gaps = 22/408 (5%)

Query: 27  GKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLN 86
                TY+ +++   R    L A G+  GD VA    N    +  + AV    A     N
Sbjct: 21  EVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTAN 80

Query: 87  AAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHS 146
              +P E  + L+ +E K+LL         +A   +L        + +   E  L+   +
Sbjct: 81  PRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEA 140

Query: 147 ESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTV 206
             +     ++           +T+GTT  PKGV  +   L         V     S+  V
Sbjct: 141 LGEEADPVRV--PERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDV 198

Query: 207 IV--LPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQ 264
           ++  +P+FHV+       ++      V          ++  +       T+   VPT+  
Sbjct: 199 VLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRL--DPASLVELFDGEGVTFTAGVPTVWL 256

Query: 265 IVLD-RHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSS- 322
            + D             LR +    ++ AP  L    E  G  V + Y +TE + ++   
Sbjct: 257 ALADYLESTGHR--LKTLRRLVVGGSA-APRSLIARFERMGVEVRQGYGLTETSPVVVQN 313

Query: 323 ------NPLPEDGPHKPGSVG--RPVGQEIAILD--EIGVPQEGGAKGEVCIRGPNVTKG 372
                   L E+      +          + + D     VP++G A GEV ++GP +T G
Sbjct: 314 FVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGG 373

Query: 373 YKNNPEANKS-AFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNL 419
           Y  N EA +S     G+F TGDI  +D +GY+ +  R+K+LI  GG  
Sbjct: 374 YYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEW 421

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified in Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes an uncharacterized subgroup of FACS. Length = 509

>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated

 Score = 72.5 bits (178), Expect = 1e-13
 Identities = 103/418 (24%), Positives = 175/418 (41%), Gaps = 52/418 (12%)

Query: 51  GINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPA 110
           GI     V     N  E + +  AV    A   PLN     D+    ++ +E ++++  A
Sbjct: 60  GITGDQRVGSMMYNCAEHLEVLFAVACMGAVFNPLNKQLMNDQIVHIINHAEDEVIV--A 117

Query: 111 EGNAAAQAAASKLNISHATATLL----DADSELT-----LSLAHSESDTNAISKLTNDP- 160
           +   A Q            A +     DADS        + +   E+  +  S + + P 
Sbjct: 118 DPRLAEQLGEILKECPCVRAVVFIGPSDADSAAAHMPEGIKVYSYEALLDGRSTVYDWPE 177

Query: 161 ---SDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSV--YKLTESDSTVIVLPLFHVH 215
              +  A   +++GTT  PKGV  +  +L     ++++     +T  +S +  +P++HV 
Sbjct: 178 LDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSLAVTHGESFLCCVPIYHV- 236

Query: 216 GMLAGL-LSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTA--VPTIHQIVLDRHVA 272
            +  G+ L++F +G  +  P     SA T  +  I   A    A  VPT+  I L  H  
Sbjct: 237 -LSWGVPLAAFMSGTPLVFPGPD-LSAPTLAK--IIATAMPRVAHGVPTL-WIQLMVHYL 291

Query: 273 KPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHL--MSSNPLPEDGP 330
           K  P    L+ I    +++ P+++   EE +G  V+  + MTE + +  ++  P    G 
Sbjct: 292 KNPPERMSLQEIYVGGSAVPPILIKAWEERYGVDVVHVWGMTETSPVGTVARPPSGVSGE 351

Query: 331 HKPG---SVGR-PVGQEIAILDEIGVPQEGGAK--GEVCIRGPNVTKGYKNNP--EANKS 382
            +     S GR P   E  I+++ G   E   +  GE+ +RG  VT  Y ++P  E   +
Sbjct: 352 ARWAYRVSQGRFPASLEYRIVND-GQVMESTDRNEGEIQVRGNWVTASYYHSPTEEGGGA 410

Query: 383 AFLF---------------GWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISL 425
           A  F               GW  TGD+G    DG+L +  R +++I  GG    S  L
Sbjct: 411 ASTFRGEDVEDANDRFTADGWLRTGDVGSVTRDGFLTIHDRARDVIRSGGEWIYSAQL 468

Length = 576

>gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional

 Score = 69.2 bits (170), Expect = 1e-12
 Identities = 117/456 (25%), Positives = 187/456 (41%), Gaps = 86/456 (18%)

Query: 31  LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
            T+ ++H+ V R A+ L + G+  GD V +  P   E     LA  R  A  + +   + 
Sbjct: 85  YTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAEAAFAMLACARIGAIHSVVFGGFA 144

Query: 91  PDEFEFYLSDSESKLLLTPAEGNAAAQAAASK--LN-----ISHATATLLDADSEL---- 139
                  + D++  L+++   G+   +    K  L+       H    +L  D  L    
Sbjct: 145 SHSLAARIDDAKPVLIVSADAGSRGGKVVPYKPLLDEAIALAQHKPRHVLLVDRGLAPMA 204

Query: 140 ----------TLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNN---- 185
                     TL   H  +        +N+PS +   L+TSGTT +PKGV   Q +    
Sbjct: 205 RVAGRDVDYATLRAQHLGARVPVEWLESNEPSYI---LYTSGTTGKPKGV---QRDTGGY 258

Query: 186 ---LAASVSNI-----KSVYKLTESD-------STVIVLPLFHVHGMLAGLLSSFAAGAA 230
              LA S+  I        +    SD       S ++  PL      LAG+ +    G  
Sbjct: 259 AVALATSMDTIFGGKAGETF-FCASDIGWVVGHSYIVYAPL------LAGMATIMYEG-- 309

Query: 231 VTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSA- 289
             LP   R  A  +W+ + KY      + PT  + VL +     +P   +   + S  A 
Sbjct: 310 --LPT--RPDAGIWWRIVEKYKVNRMFSAPTAIR-VLKKQ----DPALLRKHDLSSLRAL 360

Query: 290 SLAPVILSR-----LEEAFGAPVLEAYAMTEAT-HLMSSNPLPEDGPHKPGSVGRPV-GQ 342
            LA   L       + EA G PV++ Y  TE    +++     ED P + GS G P+ G 
Sbjct: 361 FLAGEPLDEPTASWISEALGVPVIDNYWQTETGWPILAIARGVEDRPTRLGSPGVPMYGY 420

Query: 343 EIAILDEI-GVPQEGGAKGEVCIRGP----NVTKGYKNNPEANKSAF-LFG--WFHTGDI 394
            + +L+E+ G P     KG + I GP     +   + ++    K+ + LFG   + T D 
Sbjct: 421 NVKLLNEVTGEPCGPNEKGVLVIEGPLPPGCMQTVWGDDDRFVKTYWSLFGRQVYSTFDW 480

Query: 395 GYFDSDGYLHLVGRIKELINRGGN------LHESIS 424
           G  D+DGY  ++GR  ++IN  G+      + ESIS
Sbjct: 481 GIRDADGYYFILGRTDDVINVAGHRLGTREIEESIS 516

Length = 629

>gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated

 Score = 69.0 bits (169), Expect = 2e-12
 Identities = 115/497 (23%), Positives = 181/497 (36%), Gaps = 123/497 (24%)

Query: 10  LNQVIDQFSSKRALSVSGKFDLTYSRIHELVER--------AASRLVAAGINA----GDV 57
           L + +++++  R   ++ +F L +S   + V R        A +R V A +      GD 
Sbjct: 23  LVRHVERWAKVRGDKLAYRF-LDFSTERDGVARDLTWSQFGARNRAVGARLQQVTKPGDR 81

Query: 58  VALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDE------FEFYLSDSESKLLLTPAE 111
           VA+  P  ++++I F   + A   A PL   + P E          L D     +LT  +
Sbjct: 82  VAILAPQNLDYLIAFFGALYAGRIAVPL---FDPAEPGHVGRLHAVLDDCTPSAILTTTD 138

Query: 112 GNAAAQAAASKLNISHATATL-LDA-DSELTLSLAHSESDTNAISKLTNDPSDVALFLHT 169
                +              + +DA   E+  +    E++ +           +A   +T
Sbjct: 139 SAEGVRKFFRARPAKERPRVIAVDAVPDEVGATWVPPEANED----------TIAYLQYT 188

Query: 170 SGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGA 229
           SG+T  P GV +T  NL  +V  +    +  E D  V  LP FH  G++  LL +   G 
Sbjct: 189 SGSTRIPAGVQITHLNLPTNVLQVIDALEGQEGDRGVSWLPFFHDMGLITVLLPAL-LGH 247

Query: 230 AVTL--PAA-----GRFSASTFWQDMIKYNAT-------WYTAVPTI---HQIVLDRHVA 272
            +T   PAA     GR      W   I+  A         ++A P     H     R + 
Sbjct: 248 YITFMSPAAFVRRPGR------W---IRELARKPGGTGGTFSAAPNFAFEHAAA--RGLP 296

Query: 273 KPEPVYPKLRFIRSCSASLAPVILSRLE---EAFG------APVLEAYAMTEATHLMSSN 323
           K       L  ++       PV  + +    EAF         +  +Y M EAT  +S+ 
Sbjct: 297 KDGEPPLDLSNVKGLLNGSEPVSPASMRKFNEAFAPYGLPPTAIKPSYGMAEATLFVSTT 356

Query: 324 P----------------------LPEDGPH-----KPGSVGRPVGQEIAILD-EIGVPQE 355
           P                      +P D P+       G VG    +   I+D E      
Sbjct: 357 PMDEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVSAGKVGV--SEWAVIVDPETASELP 414

Query: 356 GGAKGEVCIRGPNVTKGYKNNPEANKSAFL------------------FGWFHTGDIG-Y 396
            G  GE+ + G N+  GY   PE   + F                     W  TGD G Y
Sbjct: 415 DGQIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDALWVRTGDYGVY 474

Query: 397 FDSDGYLHLVGRIKELI 413
           F  DG L++ GR+K+L+
Sbjct: 475 F--DGELYITGRVKDLV 489

Length = 631

>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase

 Score = 68.0 bits (166), Expect = 3e-12
 Identities = 107/448 (23%), Positives = 175/448 (39%), Gaps = 70/448 (15%)

Query: 31  LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
           LTY ++H  V   AS L A G+  GD V +  P   E V   LA  R  A  + +   + 
Sbjct: 84  LTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLACARIGAIHSVVFGGFA 143

Query: 91  PDEFEFYLSDSESKLLLTPAEG-------------NAAAQAAASK----LNISHATATLL 133
                  + D+  KL+++   G             +AA   A       L +    A + 
Sbjct: 144 SHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHVLLVDRGLAPMR 203

Query: 134 -----DADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNN--- 185
                D D    L   H ++        +N+PS     L+TSGTT +PKGV         
Sbjct: 204 LIPGRDVDYA-ALRTQHEDAQVPVEWLESNEPS---YILYTSGTTGKPKGVQRDVGGYAV 259

Query: 186 -LAASVSNIKSVYK----LTESDSTVIVLPLFHVHG-MLAGLLSSFAAGAAVTLPAAGRF 239
            LA S+  I  +       + SD   +V   + V+  +LAG  +    G   T P  G  
Sbjct: 260 ALALSMWAIFGIRAGQVMFSASDVGWVVGHSYIVYAPLLAGAATVLYEGLP-TNPDPG-- 316

Query: 240 SASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPK------LRFIRSCSASLAP 293
               +W  + +Y      + PT  +++      K +  + +      L ++      L  
Sbjct: 317 ---VWWSIVERYGVRTMFSAPTAIRVL-----KKQDAAWLRKHDLSSLHWLFLAGEPLDE 368

Query: 294 VILSRLEEAFGAPVLEAYAMTEAT-HLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEI- 350
                + +  G PV++ Y  TE    +++  P  +  P K GS G P+ G  + +LDE  
Sbjct: 369 PTAHWITDGLGKPVIDNYWQTETGWPVLAIMPGLDLKPVKLGSPGLPMYGYHLRVLDEAT 428

Query: 351 GVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWF--------HTGDIGYFDSDGY 402
           G P     KG + +  P +  G  +    + + FL  ++         + D G  D DGY
Sbjct: 429 GRPCGPNEKGVLTVVPP-LPPGCLSTVWGDDARFLKTYWSHFKRPLYSSFDWGIRDEDGY 487

Query: 403 LHLVGRIKELINRGGN------LHESIS 424
             ++GR  ++IN  G+      + ES+S
Sbjct: 488 TFILGRTDDVINVAGHRLGTREIEESVS 515

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628

>gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed

 Score = 66.6 bits (163), Expect = 8e-12
 Identities = 62/238 (26%), Positives = 97/238 (40%), Gaps = 34/238 (14%)

Query: 186 LAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFW 245
           L ASV   +  ++L + +S   VLPL+HV G++  + S    G  V LP   R  +    
Sbjct: 145 LTASVQGFQRYFQLQQVNS-FCVLPLYHVSGLMQFMRSFLTGGKLVILPYK-RLKSGQEL 202

Query: 246 QDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASL---APVILSRLEEA 302
                 +  + + VPT  Q +L              +++      L   AP   S LE+A
Sbjct: 203 P--PNPSDFFLSLVPTQLQRLLQLR----------PQWLAQFRTILLGGAPAWPSLLEQA 250

Query: 303 --FGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAK 359
                 +   Y MTE T    +   P+D      S G+ +   +I I             
Sbjct: 251 RQLQLRLAPTYGMTE-TASQIATLKPDDFLAGNNSSGQVLPHAQITI--------PANQT 301

Query: 360 GEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
           G + I+  ++  GY      ++     G F T D+GY D+ GYLH++GR  + I  GG
Sbjct: 302 GNITIQAQSLALGYYPQILDSQ-----GIFETDDLGYLDAQGYLHILGRNSQKIITGG 354

Length = 452

>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated

 Score = 63.1 bits (153), Expect = 1e-10
 Identities = 103/411 (25%), Positives = 159/411 (38%), Gaps = 36/411 (8%)

Query: 27  GKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLN 86
           G   L Y  +   V   A+ L A  ++ G  V +   N  E  +  LA  +  A A   +
Sbjct: 38  GTSALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPETYLSVLACAKLGAIAVMAD 97

Query: 87  AAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHS 146
                   E +   ++    L  A G+  A  +++     H+   +    + +T    HS
Sbjct: 98  GNLPIAAIERFCQITDPAAAL-VAPGSKMA--SSAVPEALHSIPVIAVDIAAVTRESEHS 154

Query: 147 ESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKL-----TE 201
               +          D    + TSGTT  PK V L  N    +V +I     L       
Sbjct: 155 LDAASLAGNADQGSEDPLAMIFTSGTTGEPKAV-LLANRTFFAVPDILQKEGLNWVTWVV 213

Query: 202 SDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTA-VP 260
            ++T   LP  H+ G+   L      G  VT    G  + S    +++  NA   T  VP
Sbjct: 214 GETTYSPLPATHIGGLWWILTCLMHGGLCVT---GGENTTSL--LEILTTNAVATTCLVP 268

Query: 261 TIHQIVLDRHVAK---PEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEAT 317
           T+    L + V++        P LR +     S A     R  EA G    + Y ++E  
Sbjct: 269 TL----LSKLVSELKSANATVPSLRLV-GYGGSRAIAADVRFIEATGVRTAQVYGLSETG 323

Query: 318 HLMSSNPLPEDGPH----KPGSVGRPV-GQEIAILDEIGV-PQEGGAK-----GEVCIRG 366
              ++  LP D       + G+VGRP  G ++ +    G+ P   GA      G + I+ 
Sbjct: 324 --CTALCLPTDDGSIVKIEAGAVGRPYPGVDVYLAATDGIGPTAPGAGPSASFGTLWIKS 381

Query: 367 PNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
           P    GY NNPE      + GW +TGD+     DG+ ++ GR  E+I  GG
Sbjct: 382 PANMLGYWNNPERTAEVLIDGWVNTGDLLERREDGFFYIKGRSSEMIICGG 432

Length = 540

>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 62.0 bits (151), Expect = 1e-10
 Identities = 69/265 (26%), Positives = 104/265 (39%), Gaps = 44/265 (16%)

Query: 161 SDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAG 220
            DVAL + TSGTT  PKG  LT   L AS        +L      ++ LP  H+ G+   
Sbjct: 35  DDVALVVATSGTTGTPKGAMLTAAALTASADATHD--RLGGPGQWLLALPAHHIAGLQV- 91

Query: 221 LLSSFAAGAA-VTLPAAGRFSASTFWQ--DMIKYNATWYTAVPTIHQIVLDRHVAKPEPV 277
           L+ S  AG+  V L  +  F  +   +    +     + + VP      L + +  P   
Sbjct: 92  LVRSVIAGSEPVELDVSAGFDPTALPRAVAELGGGRRYTSLVPM----QLAKALDDPAAT 147

Query: 278 YPKLRF--IRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGS 335
                   +          +L     A G  V+  Y M+E +                G 
Sbjct: 148 AALAELDAVLVGGGPAPAPVLDAAAAA-GINVVRTYGMSETSG---------------GC 191

Query: 336 V--GRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTG 392
           V  G P+ G  + + D           G + + GP + KGY+N  + +  A   GWF T 
Sbjct: 192 VYDGVPLDGVRVRVED-----------GRIALGGPTLAKGYRNPVDPDPFAEP-GWFRTD 239

Query: 393 DIGYFDSDGYLHLVGRIKELINRGG 417
           D+G  D DG L ++GR  + I+ GG
Sbjct: 240 DLGALD-DGVLTVLGRADDAISTGG 263

Length = 358

>gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional

 Score = 53.6 bits (130), Expect = 1e-07
 Identities = 40/118 (33%), Positives = 62/118 (52%), Gaps = 13/118 (11%)

Query: 306 PVLEAYAMTEAT--HLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEV 362
           P+++ +  TE T   +++  PLP   P KPGS  RP+ G + A++DE G P EGG  G +
Sbjct: 397 PIVDTWWQTE-TGGIMIT--PLPGATPLKPGSATRPLPGIQPAVVDEEGNPLEGGEGGNL 453

Query: 363 CIRG--PNVTKGYKNNPEANK----SAFLFGWFHTGDIGYFDSDGYLHLVGRIKELIN 414
            I+   P + +    + E       S F  G + TGD    D DGY  + GR+ +++N
Sbjct: 454 VIKDPWPGMMRTIYGDHERFVKTYFSTFK-GMYFTGDGARRDEDGYYWITGRVDDVLN 510

Length = 637

>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 74/290 (25%), Positives = 109/290 (37%), Gaps = 47/290 (16%)

Query: 160 PSDVALFLHTSGTTSRPKGVPLTQNNLAASV-----------SNIKSVYKLTESDSTVIV 208
            +D    L+T GTT  PKGV   Q ++   +           +  +   ++    +    
Sbjct: 2   SADDLYMLYTGGTTGMPKGVMWRQEDIFRVLLGGPDFATGEPTLEELAKQVAAGGAGTRF 61

Query: 209 L---PLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQI 265
           L   PL H  G    L + FA G  V LP   +F     W+ + K+             I
Sbjct: 62  LPACPLMHGAGQWLALSALFAGGTVVLLPDD-KFDPDRVWRTVEKHRV-------NTLVI 113

Query: 266 VLDRHVAKP-------EPVY--PKLRFIRSCSASLAPVILSRLEEAF-GAPVLEAYAMTE 315
           V D   A+P          Y    LR I S  A  +P +   L E      +++A   +E
Sbjct: 114 VGDA-FARPLLEALEAAGRYDLSSLRAISSSGAMWSPEVKQGLLELLPNLALVDALGASE 172

Query: 316 ATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCI-RGPNVTKGY 373
                SS  +   G     + G+   G +  +LDE G     G+     I RG  V  GY
Sbjct: 173 TGGGGSS--VSRAGG--ASATGKFELGPDTVVLDEDGSEVPPGSGEVGWIARGGRVPLGY 228

Query: 374 KNNPEANKSAFLF------GWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
             +PE  K+A  F       +   GD    ++DG + L+GR    IN GG
Sbjct: 229 YKDPE--KTAKTFREIDGVRYAVPGDFARVEADGTITLLGRGSVCINTGG 276

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365

>gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated

 Score = 52.6 bits (127), Expect = 2e-07
 Identities = 52/221 (23%), Positives = 87/221 (39%), Gaps = 28/221 (12%)

Query: 31  LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
           LT+S+++      A  L   G + GD   +  P  +E+++ FL  ++A   A PL+    
Sbjct: 36  LTWSQLYRRTLNVAEELRRHG-STGDRAVILAPQGLEYIVAFLGALQAGLIAVPLSVPQG 94

Query: 91  ---PDEFEFYLSDSESKLLLT--PAEGNAAAQAAASKLNISHATAT--LLDADSELTLSL 143
               +     L D+   ++LT      +     A      +       LLD DS      
Sbjct: 95  GAHDERVSAVLRDTSPSVVLTTSAVVDDVTEYVAPQPGQSAPPVIEVDLLDLDSPRGSDA 154

Query: 144 AHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVY-----K 198
                          D    A   +TSG+T  P GV ++  N+ A+   + S Y      
Sbjct: 155 R------------PRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGG 202

Query: 199 LTESDSTVIV-LPLFHVHGMLAGLLSSFAAG--AAVTLPAA 236
           +   D+TV+  LP +H  G++ G+ +    G  A +T P A
Sbjct: 203 VPPPDTTVVSWLPFYHDMGLVLGVCAPILGGCPAVLTSPVA 243

Length = 578

>gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated

 Score = 49.9 bits (120), Expect = 2e-06
 Identities = 30/77 (38%), Positives = 37/77 (48%), Gaps = 18/77 (23%)

Query: 357 GAKGEVCIRGPNVTKGYKNNPEANKSAFLFG--------------WFHTGDIGYFDSDGY 402
           G  GE+ + G NV  GY   PE  +    FG              W  TGD+G F S+G 
Sbjct: 395 GTVGEIWVHGDNVAAGYWQKPEETER--TFGATLVDPSPGTPEGPWLRTGDLG-FISEGE 451

Query: 403 LHLVGRIKEL-INRGGN 418
           L +VGRIK+L I  G N
Sbjct: 452 LFIVGRIKDLLIVDGRN 468

Length = 578

>gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional

 Score = 47.1 bits (113), Expect = 1e-05
 Identities = 45/179 (25%), Positives = 69/179 (38%), Gaps = 44/179 (24%)

Query: 31  LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
           +TY  +H  V R A+ L + G+  GD VA+  P   E  +  LA  R  A  + +   ++
Sbjct: 99  ITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLACARIGAVHSVVFGGFS 158

Query: 91  PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDT 150
            +     + D+ +KL++T  EG    +    K N+  A              LA+  S  
Sbjct: 159 AEALADRIIDAGAKLVITADEGVRGGKPIPLKANVDEA--------------LANCPSVE 204

Query: 151 NAI-------------------SKLTNDPSDV----------ALF-LHTSGTTSRPKGV 179
             I                    +L    SD            LF L+TSG+T +PKGV
Sbjct: 205 KVIVVRRTGGDVDWVEGRDLWWHELVAGASDECEPEPMDAEDPLFILYTSGSTGKPKGV 263

Length = 637

>gnl|CDD|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional

 Score = 44.8 bits (107), Expect = 7e-05
 Identities = 16/44 (36%), Positives = 23/44 (52%)

Query: 31  LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLA 74
           L+++ +   V   A+ L A G+  GD VA   PN  E V+  LA
Sbjct: 115 LSWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVAMLA 158

Length = 655

>gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 72/292 (24%), Positives = 107/292 (36%), Gaps = 68/292 (23%)

Query: 167 LHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHV-----HGMLAGL 221
           L+TSGTT   K V   ++N    V        + E D   +V     +     HG L G 
Sbjct: 260 LYTSGTTGNSKAV--VRSNGPHLVGLKYYWRSIIEKDIPTVVFSHSSIGWVSFHGFLYGS 317

Query: 222 LSSFAAGAAVTLPAAG----RFSASTFWQDMIKYNATWYTAVP-TIHQIVLDRHVAKPEP 276
           LS    G    +   G    +      W  + K+  T    +P TI      R++ K +P
Sbjct: 318 LS---LGNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTI------RYLIKTDP 368

Query: 277 VYPKLRFIRSCSASLAPVILSRLEEA-FGAPVLE-----------------AYAMTE--A 316
               +R         +   LS L+E   G  V+E                  Y  TE   
Sbjct: 369 EATIIR---------SKYDLSNLKEIWCGGEVIEESIPEYIENKLKIKSSRGYGQTEIGI 419

Query: 317 THLMS--SNPLPEDGPHKPGSVGRPVGQEIAILDEIGVPQEGGAKGEVCIRGPN----VT 370
           T+L       +P +    P    +P      IL E G        GEV  + P      T
Sbjct: 420 TYLYCYGHINIPYNATGVPSIFIKPS-----ILSEDGKELNVNEIGEVAFKLPMPPSFAT 474

Query: 371 KGYKNNPEANKSAFLF----GWFHTGDIGYFDSDGYLHLVGRIKELINRGGN 418
             YKN+ +  +   LF    G++++GD+G+ D +GY  +V R  + I   GN
Sbjct: 475 TFYKNDEKFKQ---LFSKFPGYYNSGDLGFKDENGYYTIVSRSDDQIKISGN 523

Length = 647

>gnl|CDD|213273 cd05905, Dip2, Disco-interacting protein 2 (Dip2)

 Score = 42.9 bits (101), Expect = 3e-04
 Identities = 83/469 (17%), Positives = 135/469 (28%), Gaps = 84/469 (17%)

Query: 31  LTYSRIHELVER-AASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRAR---ATAAPLN 86
           LTY ++     + A + L   GI  GD V L +P+  +F+  F   + A        P  
Sbjct: 10  LTYGKLWSRAAKIAYALLKKLGIKPGDRVVLVYPDPEDFIAAFYGCLYAGLIPVPVEPPL 69

Query: 87  AAYTPDEFEFYLS----DSESKLLLTPAEGNAA--AQAAASKLNISHATATLLDADSELT 140
           +     +    L          + LT         ++     L        L+      T
Sbjct: 70  SRAGSQQVGALLGSIKHYCGVAVALTSEACLKGLRSKTTGEILKFK-GWPRLVWFV---T 125

Query: 141 LSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLT 200
                 +   +    L     D A   + +       GV +T   L      +K   + T
Sbjct: 126 EIKTLKKPIKDWNPHLPPANLDTAYIEYKTSKEGSVMGVTVTHQALLTHCQALKQACQYT 185

Query: 201 ESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTL--PAAGRFSASTFWQDMIKYNAT-WYT 257
           E  + V VL      G   G L+S   G    L  PA  + +   ++Q + KY       
Sbjct: 186 EGRTIVNVLDFKKGVGFWHGCLTSVMNGMHTILIPPALMKNNPLLWFQIISKYKIKDTLV 245

Query: 258 AVPTIHQIVLDRHVAKPEPVYPKLRFIRSC--SASLAPVILSRLEE---AFGAPVLEAYA 312
               +H  +      K       L  +R    +    P  L+  +     F +  L   A
Sbjct: 246 KSRDLHWALNAHRDQK----DINLSCLRMLIVADGARPWSLASCQAFLNVFQSKGLSPCA 301

Query: 313 MTEA---------THLMSSNPLP-------------------EDGPH-----KPGSVGRP 339
            +                S P+P                   ED P        G V   
Sbjct: 302 SSTEASTVANRRIGTRGYSGPIPGRGVLDMAALRHGVVRVDSEDKPSSLPLQDSGMV--M 359

Query: 340 VGQEIAILDEIGVPQEG-GAKGEVCIRGP-NVTKGYKNNPEANKSAFLF----------- 386
            G ++ I++    P       GE+ +    N T  Y        +  +F           
Sbjct: 360 PGAQMCIVNPDTPPLCRTDEIGEIWVNSSANATSYYGLTGMTKNTFEVFPNSSSDGIGEN 419

Query: 387 GWFHTGDIGYF----------DSDGYLHLVGRIKELINRGGNLHESISL 425
            +  TG +G+              G L +VG I E +   G  H    +
Sbjct: 420 PYVRTGLLGFVGPTSHSMGPVVDMGLLFVVGSIDETLEVSGLRHNPDDI 468

Dip2 proteins show sequence similarity to other members of the adenylate forming enzyme family, including insect luciferase, acetyl CoA ligases and the adenylation domain of nonribosomal peptide synthetases (NRPS). However, its function may have diverged from other members of the superfamily. In mouse embryo, Dip2 homolog A plays an important role in the development of both vertebrate and invertebrate nervous systems. Dip2A appears to regulate cell growth and the arrangement of cells in organs. Biochemically, Dip2A functions as a receptor of FSTL1, an extracellular glycoprotein, and may play a role as a cardiovascular protective agent. Length = 556

>gnl|CDD|234212 TIGR03443, alpha_am_amid, L-aminoadipate-semialdehyde dehydrogenase

 Score = 43.1 bits (102), Expect = 3e-04
 Identities = 46/164 (28%), Positives = 71/164 (43%), Gaps = 18/164 (10%)

Query: 32  TYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTP 91
           TY +I+E     A  L+  GI  GDVV +     V+ V+  + V++A AT + ++ AY P
Sbjct: 272 TYKQINEASNILAHYLLKTGIKRGDVVMIYAYRGVDLVVAVMGVLKAGATFSVIDPAYPP 331

Query: 92  DEFEFYLSDSESKLLLTPAEGNAAAQAAASKLN-----ISHATATLLDADSELT-LSLAH 145
                YLS ++ + L+   +     Q     ++      +   A  L  D  L   SL  
Sbjct: 332 ARQTIYLSVAKPRALIVIEKAGTLDQLVRDYIDKELELRTEIPALALQDDGSLVGGSLEG 391

Query: 146 SESDTNA-ISKLTNDPSDVAL---------FLHTSGTTSRPKGV 179
            E+D  A    L + P+ V +         F  TSG+   PKGV
Sbjct: 392 GETDVLAPYQALKDTPTGVVVGPDSNPTLSF--TSGSEGIPKGV 433

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. Length = 1389

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 42.8 bits (101), Expect = 4e-04
 Identities = 27/66 (40%), Positives = 34/66 (51%), Gaps = 10/66 (15%)

Query: 352  VPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFL---FG-----WFHTGDIGYFDSDGYL 403
            VP   GA GE+C+ G  V +GY  +P     AF+   FG      + TGD+    SDG L
Sbjct: 4061 VPL--GAVGELCVAGTGVGRGYVGDPLRTALAFVPHPFGAPGERLYRTGDLARRRSDGVL 4118

Query: 404  HLVGRI 409
              VGRI
Sbjct: 4119 EYVGRI 4124

Length = 4334

>gnl|CDD|236231 PRK08308, PRK08308, acyl-CoA synthetase; Validated

 Score = 41.6 bits (98), Expect = 7e-04
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 390 HTGDIGYFDSDGYLHLVGRIKELINRGG 417
            T D+GY    G LH +GR+ ++IN  G
Sbjct: 294 FTKDLGYKSERGTLHFMGRMDDVINVSG 321

Length = 414

>gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS)

 Score = 41.4 bits (98), Expect = 7e-04
 Identities = 44/181 (24%), Positives = 64/181 (35%), Gaps = 47/181 (25%)

Query: 31  LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
           ++++ +   V R A+ L   G+  GD VA   PN  E VI  LA        A + A ++
Sbjct: 87  ISWAELRSQVARLAAALRDLGVKPGDRVAGYLPNVPEAVIAMLA-------TASIGAIWS 139

Query: 91  ---PDEFEF-------YLSDSESKLLLTPAEG-----------NAAAQAAAS-------- 121
              PD   F            E K+L    +G              A+            
Sbjct: 140 SCSPD---FGVEAVLDRFGQIEPKVLFA-VDGYVYNGKEHDRREKIAEIVKGLPSLEAVV 195

Query: 122 ---KLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALF-LHTSGTTSRPK 177
               L+     A L  +   L  SLA   +      +L   P D  L+ L++SGTT  PK
Sbjct: 196 VVPYLSSDAQPAALKFSALTLLWSLAGDRAAPLEFERL---PFDHPLWILYSSGTTGLPK 252

Query: 178 G 178
            
Sbjct: 253 C 253

AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616

>gnl|CDD|215553 PLN03052, PLN03052, acetate--CoA ligase; Provisional

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 25/78 (32%), Positives = 39/78 (50%)

Query: 31  LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
           +T S +   V R A+ L A G   GD +A+  P  V  VI++LA+I A      +  ++ 
Sbjct: 209 MTLSELRSQVSRVANALDALGFEKGDAIAIDMPMNVHAVIIYLAIILAGCVVVSIADSFA 268

Query: 91  PDEFEFYLSDSESKLLLT 108
           P E    L  S++K + T
Sbjct: 269 PSEIATRLKISKAKAIFT 286

Length = 728

>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 359 KGEVCIRGPNVTKGYKNNPEANKSAFLF-GWFHTGDIGYFDSDGYLHLVGRIKELI 413
           KGE+ I+  ++  GY    E  K+AF   G+F TGDI   + +G L  + R K L+
Sbjct: 541 KGELLIKSDSIFSGYFLEKEQTKNAFTEDGYFKTGDIVQINKNGSLTFLDRSKGLV 596

Length = 746

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	431
KOG1176	537	consensus Acyl-CoA synthetase [Lipid transport and	100.0
KOG1177	596	consensus Long chain fatty acid acyl-CoA ligase [L	100.0
COG0318	534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	100.0
COG0365	528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	100.0
PLN02614	666	long-chain acyl-CoA synthetase	100.0
PTZ00342	746	acyl-CoA synthetase; Provisional	100.0
COG1022	613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	100.0
PLN02736	651	long-chain acyl-CoA synthetase	100.0
COG1021	542	EntE Peptide arylation enzymes [Secondary metaboli	100.0
PRK06334	539	long chain fatty acid--[acyl-carrier-protein] liga	100.0
PLN02861	660	long-chain-fatty-acid-CoA ligase	100.0
PTZ00237	647	acetyl-CoA synthetase; Provisional	100.0
PRK07788	549	acyl-CoA synthetase; Validated	100.0
PRK07529	632	AMP-binding domain protein; Validated	100.0
PLN02654	666	acetate-CoA ligase	100.0
PLN02387	696	long-chain-fatty-acid-CoA ligase family protein	100.0
PLN02860	563	o-succinylbenzoate-CoA ligase	100.0
TIGR02316	628	propion_prpE propionate--CoA ligase. This family c	100.0
PRK13295	547	cyclohexanecarboxylate-CoA ligase; Reviewed	100.0
TIGR02188	625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	100.0
PRK13382	537	acyl-CoA synthetase; Provisional	100.0
PTZ00216	700	acyl-CoA synthetase; Provisional	100.0
PRK05852	534	acyl-CoA synthetase; Validated	100.0
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK00174	637	acetyl-CoA synthetase; Provisional	100.0
PRK09274	552	peptide synthase; Provisional	100.0
PRK04319	570	acetyl-CoA synthetase; Provisional	100.0
PRK05677	562	long-chain-fatty-acid--CoA ligase; Validated	100.0
PLN02246	537	4-coumarate--CoA ligase	100.0
PLN02430	660	long-chain-fatty-acid-CoA ligase	100.0
PRK06839	496	acyl-CoA synthetase; Validated	100.0
PRK08314	546	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06155	542	crotonobetaine/carnitine-CoA ligase; Provisional	100.0
KOG1256	691	consensus Long-chain acyl-CoA synthetases (AMP-for	100.0
PLN02574	560	4-coumarate--CoA ligase-like	100.0
PRK06060	705	acyl-CoA synthetase; Validated	100.0
PRK10524	629	prpE propionyl-CoA synthetase; Provisional	100.0
PRK07470	528	acyl-CoA synthetase; Validated	100.0
PF00501	417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	100.0
PRK05857	540	acyl-CoA synthetase; Validated	100.0
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK03640	483	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
TIGR02275	527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	100.0
PRK05605	573	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07769	631	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07638	487	acyl-CoA synthetase; Validated	100.0
PRK07514	504	malonyl-CoA synthase; Validated	100.0
TIGR03208	538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	100.0
PRK08316	523	acyl-CoA synthetase; Validated	100.0
PRK06087	547	short chain acyl-CoA synthetase; Reviewed	100.0
PRK08180	614	feruloyl-CoA synthase; Reviewed	100.0
PRK06145	497	acyl-CoA synthetase; Validated	100.0
PRK07786	542	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK08315	559	AMP-binding domain protein; Validated	100.0
PRK08008	517	caiC putative crotonobetaine/carnitine-CoA ligase;	100.0
PRK08043	718	bifunctional acyl-[acyl carrier protein] synthetas	100.0
PRK12583	558	acyl-CoA synthetase; Provisional	100.0
PRK06188	524	acyl-CoA synthetase; Validated	100.0
PRK12492	562	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	100.0
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	100.0
PRK12476	612	putative fatty-acid--CoA ligase; Provisional	100.0
PLN02330	546	4-coumarate--CoA ligase-like 1	100.0
PRK07059	557	Long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK10252	1296	entF enterobactin synthase subunit F; Provisional	100.0
PRK12582	624	acyl-CoA synthetase; Provisional	100.0
PLN03102	579	acyl-activating enzyme; Provisional	100.0
PLN03052	728	acetate--CoA ligase; Provisional	100.0
PRK03584	655	acetoacetyl-CoA synthetase; Provisional	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK06164	540	acyl-CoA synthetase; Validated	100.0
TIGR01217	652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	100.0
PRK09088	488	acyl-CoA synthetase; Validated	100.0
TIGR03098	515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	100.0
TIGR02262	508	benz_CoA_lig benzoate-CoA ligase family. Character	100.0
PRK13383	516	acyl-CoA synthetase; Provisional	100.0
PRK05851	525	long-chain-fatty-acid--[acyl-carrier-protein] liga	100.0
PRK10946	536	entE enterobactin synthase subunit E; Provisional	100.0
PRK13388	540	acyl-CoA synthetase; Provisional	100.0
PRK06178	567	acyl-CoA synthetase; Validated	100.0
PRK08751	560	putative long-chain fatty acyl CoA ligase; Provisi	100.0
PRK07008	539	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07867	529	acyl-CoA synthetase; Validated	100.0
TIGR03205	541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	100.0
PRK06710	563	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK08974	560	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK08279	600	long-chain-acyl-CoA synthetase; Validated	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PLN02479	567	acetate-CoA ligase	100.0
PRK05620	576	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07787	471	acyl-CoA synthetase; Validated	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK05850	578	acyl-CoA synthetase; Validated	100.0
PRK05691	4334	peptide synthase; Validated	100.0
TIGR01734	502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	100.0
PRK06018	542	putative acyl-CoA synthetase; Provisional	100.0
PRK13390	501	acyl-CoA synthetase; Provisional	100.0
KOG1180	678	consensus Acyl-CoA synthetase [Lipid transport and	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	100.0
PRK13391	511	acyl-CoA synthetase; Provisional	100.0
PRK09192	579	acyl-CoA synthetase; Validated	100.0
PRK08162	545	acyl-CoA synthetase; Validated	100.0
PRK04813	503	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
TIGR01733	408	AA-adenyl-dom amino acid adenylation domain. This	100.0
PRK07798	533	acyl-CoA synthetase; Validated	100.0
PRK07768	545	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK12406	509	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PRK08276	502	long-chain-fatty-acid--CoA ligase; Validated	100.0
KOG1175	626	consensus Acyl-CoA synthetase [Lipid transport and	100.0
PRK09029	458	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK07868	994	acyl-CoA synthetase; Validated	100.0
KOG1179	649	consensus Very long-chain acyl-CoA synthetase/fatt	100.0
PRK07445	452	O-succinylbenzoic acid--CoA ligase; Reviewed	100.0
PLN03051	499	acyl-activating enzyme; Provisional	100.0
TIGR01923	436	menE O-succinylbenzoate-CoA ligase. This model rep	100.0
PRK08308	414	acyl-CoA synthetase; Validated	100.0
COG1020	642	EntF Non-ribosomal peptide synthetase modules and	100.0
PTZ00297	1452	pantothenate kinase; Provisional	100.0
PRK07824	358	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	100.0
TIGR02372	386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	99.98
KOG3628	1363	consensus Predicted AMP-binding protein [General f	99.97
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	99.96
TIGR03089	227	conserved hypothetical protein TIGR03089. This pro	99.96
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	99.93
KOG1178	1032	consensus Non-ribosomal peptide synthetase/alpha-a	99.9
KOG3628	1363	consensus Predicted AMP-binding protein [General f	99.82
TIGR02304	430	aden_form_hyp probable adenylate-forming enzyme. M	99.69
PF04443	365	LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR	99.23
PF03321	528	GH3: GH3 auxin-responsive promoter; InterPro: IPR0	98.54
PRK09188	365	serine/threonine protein kinase; Provisional	98.37
PLN02249	597	indole-3-acetic acid-amido synthetase	98.11
PLN02247	606	indole-3-acetic acid-amido synthetase	98.1
PLN02620	612	indole-3-acetic acid-amido synthetase	97.98
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	96.2
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	90.78
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	90.73
PLN02736	651	long-chain acyl-CoA synthetase	82.6
TIGR03089	227	conserved hypothetical protein TIGR03089. This pro	81.22
PF00501	417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	81.16

>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=3.3e-69  Score=505.61  Aligned_cols=407  Identities=37%  Similarity=0.535  Sum_probs=347.7

Q ss_pred             HHhcCCc-ceEEecC--CCcccHHHHHHHHHHHHHHHHHcC--CCCCCEEEEECCCcHHHHHHHHHHHHhCcEEEecCCC
Q 014065           14 IDQFSSK-RALSVSG--KFDLTYSRIHELVERAASRLVAAG--INAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAA   88 (431)
Q Consensus        14 a~~~p~~-~a~~~~~--~~~~Ty~el~~~~~~~a~~L~~~g--l~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~   88 (431)
                      +..++++ +.+++.+  ++.+||.|++.++.++|..|.++|  +++||+|++++||++++.++++||+.+|+++.+++|.
T Consensus        26 ~~~~~~~~~~~i~~~~~g~~~T~~e~~~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~~~~~~~la~~~~Ga~~~~~Np~  105 (537)
T KOG1176|consen   26 AFVYLDRNTSLVYQDSDGRELTYSELHDRCRRLASALSELGLGIKKGDVVGILAPNTPEFVELALAVPMAGAVLNPLNPR  105 (537)
T ss_pred             ccccccCcceEEEecCCCcEEcHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCHHHHHHHHHHHHcCccccccCcc
Confidence            3344444 6777644  489999999999999999999876  7999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCcccccccccccc-------hhhh-hhhccccccccccccCCCCC
Q 014065           89 YTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDAD-------SELT-LSLAHSESDTNAISKLTNDP  160 (431)
Q Consensus        89 ~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-~~~~~~~~~~~~~~~~~~~~  160 (431)
                      +...++.+.++.++++++|++.+..+.+.+...............+..       .... ... ......... ......
T Consensus       106 ~~~~ei~~~~~~s~~kiif~d~~~~~~i~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~  183 (537)
T KOG1176|consen  106 LTASEIAKQLKDSKPKLIFVDEDFYDKISEATSKLALKIIVLTGDEGVISISDLVEDLDAFED-LMPEGLPDG-IRPVSE  183 (537)
T ss_pred             cCHHHHHHHHHhcCCeEEEEcCchHHHHHHHHhhcCCceEEEecccCccccccccccccchhh-ccccCCCcc-cccCCC
Confidence            999999999999999999999999888877776644222221111000       0000 000 000000111 455667


Q ss_pred             CCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCCCCCCC
Q 014065          161 SDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFS  240 (431)
Q Consensus       161 ~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~  240 (431)
                      +|+++++|||||||.||+|.+||+++..+.........+..+++.++.+|++|.+|++..+...+..|++++..+  .|+
T Consensus       184 dd~~~il~SSGTTg~PKgV~lsHr~~~~~~~~~~~~~~~~~~~v~l~~lPl~H~~Gl~~~~~~~~~~~~~ii~~~--~f~  261 (537)
T KOG1176|consen  184 DDTAAILYSSGTTGLPKGVVLSHRNLIANTLSIKIGWELTSDDVYLCTLPLFHIYGLITLLLSLLAGGTTIICLR--KFD  261 (537)
T ss_pred             CCeEEEecCCCCCCCCceEEEecHHHHHHHHHhhhcccCCCCceEEEechHHHHhHHHHHHHHHHhCCceEEECC--CCC
Confidence            999999999999999999999999999887776666677779999999999999999996666777777777777  789


Q ss_pred             hhhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHhC-CceecccCcccccCc
Q 014065          241 ASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFG-APVLEAYAMTEATHL  319 (431)
Q Consensus       241 ~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~-~~i~~~yg~tE~~~~  319 (431)
                      +..+++.|++|++|++.++|.++..+++.+. ....++++++.+.+||++++++..+++.+.++ ..+.+.||+||+++.
T Consensus       262 ~~~~~~~i~kykvt~~~~vP~~~~~l~~~p~-~~~~~l~sl~~v~~gga~~~~~~~~~~~~~l~~~~v~q~YGmTE~~~~  340 (537)
T KOG1176|consen  262 AELFLDLIEKYKVTHLFLVPPVLNMLAKSPI-VKKYDLSSLRSVLSGGAPLSPATLEKVKERLPNVTVIQGYGMTEAGGL  340 (537)
T ss_pred             HHHHHHHHHHhCEEEEEcChHHHHHHhcCCc-cCcccCCccEEEEecCCCCCHHHHHHHHHhCCCceEEEeeccccccCc
Confidence            9999999999999999999999999999873 33567999999999999999999999999997 889999999999988


Q ss_pred             ccCCCCCCCCCCCCCCccccc-cceEEEECCCCCcCCCCceeeEEEeCCccccccccCcchhhhcccC-CceecCceEEE
Q 014065          320 MSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF-GWFHTGDIGYF  397 (431)
Q Consensus       320 ~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~-g~~~TGD~~~~  397 (431)
                      ++.+...+.  ..++++|+++ +..+++.++.|+.++.++.||||++|++++.||+++|+.|++.|.+ |||+|||+|++
T Consensus       341 ~~~~~~~~e--~k~~svG~~~~g~~~~v~~e~g~~l~~~~~GEI~vrg~~imkGY~~NpeaT~~~~~~~GW~~TGDiGy~  418 (537)
T KOG1176|consen  341 ITSNDWGPE--RKPGSVGRLLPGVRVKVLDETGVSLGPNQTGEICVRGPQVMKGYLKNPEATKEAFDDDGWFHTGDLGYF  418 (537)
T ss_pred             eeecCCCcc--CcccccCccccceEEEeeCCCCCCCCCCCceEEEEECcccchhhcCChHHHHhhcccCCccccCceEEE
Confidence            888765433  6899999999 7999999999999999999999999999999999999999999977 99999999999


Q ss_pred             cCCCeEEEecccccceecCCeeccccceec
Q 014065          398 DSDGYLHLVGRIKELINRGGNLHESISLFL  427 (431)
Q Consensus       398 ~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~  427 (431)
                      |+||+|++++|.+|+||.+|++|+|.|||.
T Consensus       419 D~DG~l~IvdR~KdlIk~~G~qv~P~EiE~  448 (537)
T KOG1176|consen  419 DEDGYLYIVDRSKDLIKYGGEQVSPAEIEA  448 (537)
T ss_pred             cCCCeEEEecchhhheeeCCEEeCHHHHHH
Confidence            999999999999999999999999999996

>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]

Probab=100.00  E-value=1.2e-69  Score=475.12  Aligned_cols=425  Identities=27%  Similarity=0.367  Sum_probs=363.7

Q ss_pred             CCcccHHHHHHHHHHhcCCcceEEec-CCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhC
Q 014065            1 MEGVTLIGLLNQVIDQFSSKRALSVS-GKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRAR   79 (431)
Q Consensus         1 m~~~tl~~~l~~~a~~~p~~~a~~~~-~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G   79 (431)
                      |.+.|++++++..+++.||+.|++++ ++.+.||+||.+.++.+|++|++.|+++||+|++..||+.+|+..+|||+++|
T Consensus        47 l~~~Tigq~l~~~t~~v~dkea~Vf~~eg~R~Tf~~~~~ev~slAaGll~lGL~kGDrVgvwgpN~~~w~l~~lA~A~AG  126 (596)
T KOG1177|consen   47 LDSETIGQLLETTTERVPDKEAAVFDHEGIRLTFSEFVSEVESLAAGLLSLGLKKGDRVGVWGPNSYEWVLCQLACARAG  126 (596)
T ss_pred             cccccHHHHHHHHhhccCcceEEEEeeccchhhHHHHHHHHHHHHhhHHhhcCCCCCEEEEecCChHHHHHHHHHHHHhc
Confidence            56789999999999999999999975 45789999999999999999999999999999999999999999999999999


Q ss_pred             cEEEecCCCCCHHHHHHHHhcCCceEEEecCCchhH-----HHHHHHhcCc-----------ccc-cccccccc----hh
Q 014065           80 ATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAA-----AQAAASKLNI-----------SHA-TATLLDAD----SE  138 (431)
Q Consensus        80 ~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~-----~~~~~~~~~~-----------~~~-~~~~~~~~----~~  138 (431)
                      .+.+++||.+...++++.|++.+++++|+.+.+...     +.+...+...           +.. .+.+.+.+    ..
T Consensus       127 ~v~v~~NP~Yq~~elr~~L~k~~~k~l~~p~~~k~~ny~~~l~~icPEv~~~~~G~lkS~~lp~lthvi~~~ed~~~~Ga  206 (596)
T KOG1177|consen  127 LVLVNLNPAYQSEELRYVLKKVGCKALFAPPQFKTQNYYETLLEICPEVMRGDPGQLKSELLPELTHVILADEDHPLPGA  206 (596)
T ss_pred             eEEeccCcccccHHHHHHHhhcCeEEEEccchhhhchHHHHHHHhhHHhhcCCCccccccccccceEEEecCCCCcCCCc
Confidence            999999999999999999999999999998764322     3333322211           000 01111111    01


Q ss_pred             hhhhhc---ccccccc--ccccCCCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhh
Q 014065          139 LTLSLA---HSESDTN--AISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFH  213 (431)
Q Consensus       139 ~~~~~~---~~~~~~~--~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~  213 (431)
                      ..+.+.   .......  ........+++.+-|.|||||||.||++.+||.+++++........++..++++++..|++|
T Consensus       207 ~~~sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH~~~~Nna~~vg~r~g~~e~~~i~~~~Pl~H  286 (596)
T KOG1177|consen  207 FLLSEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATLSHYNFLNNARAVGARAGYNEKHRICIPNPLYH  286 (596)
T ss_pred             eehHHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCCcceeeehhhhhhhHHHHHHHhCcCcceEEEecCchHH
Confidence            111100   0001111  11223456799999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCEEEeCCCCCCChhhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcH
Q 014065          214 VHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAP  293 (431)
Q Consensus       214 ~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~  293 (431)
                      .+|...+++.++..|++++++.+ .|++.+.+++|+++++|+++++|+++..+++.+... ..+++++|.++.||+++++
T Consensus       287 ~~G~~~~~ma~l~~gat~Vfp~~-~f~~k~alqai~~ekcT~l~gtPtM~~Dlln~~~~~-~~~~s~lr~~vigGa~~s~  364 (596)
T KOG1177|consen  287 CFGCVLGVMAALMHGATIVFPAP-SFDPKDALQAISNEKCTTLYGTPTMFVDLLNIPQKQ-QVDLSSLRKGVIGGAPVSP  364 (596)
T ss_pred             HHHHHHHHHHHHHhCcEEEeeCC-CCChHHHHHHHHhhceEEEecChHHHHHHhcchhhc-cCchhhhhhheeCCCCCCH
Confidence            99999999999999999999876 789999999999999999999999999999887765 4568999999999999999


Q ss_pred             HHHHHHHHHhCCc-eecccCcccccCcccCCCCCCCCCCCCCCccccc-cceEEEECCCCCcCCCCceeeEEEeCCcccc
Q 014065          294 VILSRLEEAFGAP-VLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTK  371 (431)
Q Consensus       294 ~~~~~~~~~~~~~-i~~~yg~tE~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d~~~~~~~~~~~Gel~v~~~~~~~  371 (431)
                      ++++.+.+.+++. +...||+||+++..+.....++......++|+.+ ..+..++|.+|..++.+..||||++|.+.+.
T Consensus       365 eLlk~iv~~~~m~~i~v~YG~TEts~v~~~~~~~D~~~~~~ksVG~~m~h~Ea~iv~~~g~~v~~~~~Gel~iRGY~tMl  444 (596)
T KOG1177|consen  365 ELLKLIVNQMNMKDIAVAYGLTETSPVLFMSLLGDPPEERIKSVGHLMDHYEAAIVDKDGSEVPLGTKGELLIRGYSTML  444 (596)
T ss_pred             HHHHHHHHhhCceeeEEEeeccccCcceeeecCCCCHHHHHhhhhhcccccccccccCCCCccccCCCceEEEEechhhe
Confidence            9999999887654 6688999999988888776666677778999999 6999999999999999999999999999999


Q ss_pred             ccccCcchhhhcc-cCCceecCceEEEcCCCeEEEecccccceecCCeeccccceec
Q 014065          372 GYKNNPEANKSAF-LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFL  427 (431)
Q Consensus       372 gy~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~  427 (431)
                      |||++++.+.+.. .|.||+|||+|.+|++|.++++||.+|+|+.+|++|+|.|||.
T Consensus       445 ~Ywg~~~kT~eti~~drW~~TGDi~~m~enG~i~iVGRskdmI~rGGENVyP~ElE~  501 (596)
T KOG1177|consen  445 GYWGEEEKTKETIGNDRWYDTGDIAVMDENGTIEIVGRSKDMIIRGGENVYPTELED  501 (596)
T ss_pred             eecCCcccchhhcccccceecCceEEEcCCCcEEEEEcccCeEEeCCcccChHHHHH
Confidence            9999999888887 5689999999999999999999999999999999999999996

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=1.9e-68  Score=518.13  Aligned_cols=425  Identities=39%  Similarity=0.596  Sum_probs=357.0

Q ss_pred             CcccHHHHHHHHHHhcCCcceEEecCCCc-ccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCc
Q 014065            2 EGVTLIGLLNQVIDQFSSKRALSVSGKFD-LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARA   80 (431)
Q Consensus         2 ~~~tl~~~l~~~a~~~p~~~a~~~~~~~~-~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~   80 (431)
                      ...++.+.+.++++.+|+++|+++.+... +||+||.++++++|++|++.|+++||+|+|+++|++++++++|||+++|+
T Consensus         9 ~~~~~~~~l~~~a~~~~~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~~~v~~gdrVail~~N~~e~~~~~~a~~~~Ga   88 (534)
T COG0318           9 AELTLASLLERAARRNPDRPALIFLGRGGRLTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALRAGA   88 (534)
T ss_pred             ccccHHHHHHHHHHhCCCceEEEEcCCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCE
Confidence            35789999999999999999999876432 99999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCcccccccccccchh--hhhhhccccccccccccCCC
Q 014065           81 TAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSE--LTLSLAHSESDTNAISKLTN  158 (431)
Q Consensus        81 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  158 (431)
                      +++|++|.++.+++.++++.+++++++++....+........................  ..+.................
T Consensus        89 v~vpln~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (534)
T COG0318          89 VAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAVAEALPVVLVVLLVGDADDRLPITLEALAAEGPGPDADARPV  168 (534)
T ss_pred             EEeecCcccCHHHHHHHHHhcCCeEEEEcccchhHHHHHhccCCcceEEEecccccccccccHHHHhhccCCcccccCCC
Confidence            9999999999999999999999999999988555544444332111111111111000  01111111011111111226


Q ss_pred             CCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhc--CCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCCC
Q 014065          159 DPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYK--LTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAA  236 (431)
Q Consensus       159 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~--~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~  236 (431)
                      .++++++++|||||||.||+|++||+++..+...+...++  ++++|++++.+|++|.+|+...++.++..|+++++.++
T Consensus       169 ~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~Gl~~~~~~~~~~G~~~v~~~~  248 (534)
T COG0318         169 DPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIFGLIVGLLAPLLGGGTLVLLSP  248 (534)
T ss_pred             CCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHhcccCCCCceEEEecChHHHHHHHHHHHHHHHcCCEEEeCCC
Confidence            7899999999999999999999999999999998888888  89999999999999999999978888999999999875


Q ss_pred             CCCChhhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCC-CccEEEeccCCCcHHHHHHHHHHhC-CceecccCcc
Q 014065          237 GRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYP-KLRFIRSCSASLAPVILSRLEEAFG-APVLEAYAMT  314 (431)
Q Consensus       237 ~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~-~l~~i~~~g~~~~~~~~~~~~~~~~-~~i~~~yg~t  314 (431)
                      ..|++..++..+.++++|++.++|+++..++++...... +++ ++|.++.||+++++++++++.+.|+ ..+++.||+|
T Consensus       249 ~~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~~~~~-~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~T  327 (534)
T COG0318         249 EPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDDD-DLSSSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLT  327 (534)
T ss_pred             CCcCHHHHHHHHHHhcceEEecchHHHHHHHhCCccCcc-ccccceEEEEecCCcCCHHHHHHHHHHhCCCceEEeeccc
Confidence            568999999999999999999999999999888765432 234 4999999999999999999999997 5799999999


Q ss_pred             cccCcccCCCCCCCCCCCCCCccccc-cceEEEECCCCC-cCCCCceeeEEEeCCccccccccCcchhhhcccC-Cceec
Q 014065          315 EATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGV-PQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF-GWFHT  391 (431)
Q Consensus       315 E~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d~~~~-~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~-g~~~T  391 (431)
                      |+++.++...... .....+++|+|+ +++++|+|+++. ++| |++|||+++||+++.||+++++.+++.|.+ |||+|
T Consensus       328 E~~~~~~~~~~~~-~~~~~~~~G~~~pg~~v~Ivd~~~~~~~p-g~vGei~irgp~v~~GY~~~pe~t~~~f~~~gW~~T  405 (534)
T COG0318         328 ETSPVVTINPPDD-LLAKPGSVGRPLPGVEVRIVDPDGGEVLP-GEVGEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRT  405 (534)
T ss_pred             ccCceeecCCCch-hhhcCCcccccCCCcEEEEEeCCCCccCC-CCceEEEEECchhhhhhcCChHHHHHhhccCCeeee
Confidence            9998777765432 124667789999 799999997754 556 889999999999999999999999998876 99999


Q ss_pred             CceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          392 GDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       392 GD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      ||+|++|++|+++|.||.+|+|+++|++|+|.|||.+.
T Consensus       406 GDlg~~d~~G~l~i~gR~kd~I~~gG~ni~p~eiE~~l  443 (534)
T COG0318         406 GDLGYVDEDGYLYIVGRLKDLIISGGENIYPEEIEAVL  443 (534)
T ss_pred             cceEEEcCCccEEEEeccceEEEeCCeEECHHHHHHHH
Confidence            99999999999999999999999999999999999763

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

Probab=100.00  E-value=8.5e-69  Score=500.05  Aligned_cols=412  Identities=25%  Similarity=0.342  Sum_probs=342.9

Q ss_pred             HHHHHHHh-cCCcceEEecCC----CcccHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCcHHHHHHHHHHHHhCcEE
Q 014065            9 LLNQVIDQ-FSSKRALSVSGK----FDLTYSRIHELVERAASRLVA-AGINAGDVVALTFPNTVEFVIMFLAVIRARATA   82 (431)
Q Consensus         9 ~l~~~a~~-~p~~~a~~~~~~----~~~Ty~el~~~~~~~a~~L~~-~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~   82 (431)
                      +++++... .+++.|+++.+.    +++||+||++.++++|+.|++ .|+ +||+|++++|+.++.++++|||+++|+++
T Consensus        14 ~~dr~~~~~~~~~~aii~~~e~~~~~~~Ty~~L~~~v~r~A~~L~~~~gv-kGDrV~iymp~~pe~~~a~LA~~riGAI~   92 (528)
T COG0365          14 ALDRHLEADRPDDTAIIFDGEDGLFRELTYGDLRREVARLANALKDLGGV-KGDRVAIYMPNSPEAVIALLATARIGAIP   92 (528)
T ss_pred             hhhhhhhccCCCceEEEEEcCCCCceEEEHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcCCCHHHHHHHHHHHHcCCEE
Confidence            46666653 468999998643    689999999999999999997 567 99999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCccccc--ccccccchhhhhhhccccccccccccCCCCC
Q 014065           83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHAT--ATLLDADSELTLSLAHSESDTNAISKLTNDP  160 (431)
Q Consensus        83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (431)
                      +|+.+.++.+.+...+++++++++|+++...................  +.+..... ..+..... ...........+.
T Consensus        93 ~~vf~~f~~~al~~Ri~d~~~k~vit~d~~~~~gk~~~~~~~~~~~~~~~iv~~r~~-~~~~~~~~-~~~~~~~~~~~~~  170 (528)
T COG0365          93 AVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSSVVVVPRLG-LWYDEAVE-KASEKFEFEPLPA  170 (528)
T ss_pred             eecccCCCHHHHHHHHHccCCCEEEEecccccccccccchhHHHHhhcceEEecccc-ccHHHHhh-ccCCCCCccccCC
Confidence            99999999999999999999999999887444322111111000000  11111111 22221111 1111222333788


Q ss_pred             CCeEEEEeccCCCCCCCeeeechHHHHHHHHH-HHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCCCCCC
Q 014065          161 SDVALFLHTSGTTSRPKGVPLTQNNLAASVSN-IKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRF  239 (431)
Q Consensus       161 ~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~  239 (431)
                      +|+++++|||||||+||+|+++|..++..... ....+++.++|++++..+..|.+|.++.++++|..|+++++.+...+
T Consensus       171 ~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~~~~~~~Dv~w~~ad~GW~~g~~~~v~~pL~~Gat~~~~eg~p~  250 (528)
T COG0365         171 DDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHGDLLPGDRFWNSSDPGWIYGLWYSVFSPLASGATTVLYDGRPF  250 (528)
T ss_pred             CCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHHhhCCCCCCEEEeCCCchhhhCchHHHHHHHhcCCeEEEeCCCCC
Confidence            99999999999999999999999987766654 44567888999999999999999999999999999999998875444


Q ss_pred             C-hhhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHhCCceecccCcccccC
Q 014065          240 S-ASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATH  318 (431)
Q Consensus       240 ~-~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~i~~~yg~tE~~~  318 (431)
                      . +..+++.|+++++|.++..|+.++.|.+... ....++++||.+.+.||+++++.++++.+.+|++|.+.||+||+++
T Consensus       251 ~~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~-~~~~dlssLr~~~SaGEPLnpe~~~w~~~~~g~~i~d~~gqTEtg~  329 (528)
T COG0365         251 YSPERLWEALEKYKVTIFGTSPTFLRRLMKLGL-GEPYDLSSLRVLGSAGEPLNPEAFEWFYSALGVWILDIYGQTETGM  329 (528)
T ss_pred             CCHHHHHHHHHHhCCceEeeCHHHHHHHHhcCC-cccccchhheeeeccCCCCCHHHHHHHHHHhCCCEeccccccccCc
Confidence            4 9999999999999999999999999998876 4567899999999999999999999999999999999999999995


Q ss_pred             cccCCCCCCCCCCCCCCccccc-cceEEEECCCCCcCCCCceeeEEEeCC--ccccccccCcchhhhcccCCceecCceE
Q 014065          319 LMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGP--NVTKGYKNNPEANKSAFLFGWFHTGDIG  395 (431)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d~~~~~~~~~~~Gel~v~~~--~~~~gy~~~~~~~~~~~~~g~~~TGD~~  395 (431)
                      +......    ...+++.|+|+ |+++.++|++|++++.++ |+|+++.+  +++++||++++.+.+.+.+.||.|||.+
T Consensus       330 ~~~~~~~----~~~~g~~g~p~pG~~~~vvdd~g~~~~~~~-G~Lvi~~~~p~~~~~~w~d~er~~~~y~~~~y~tGD~~  404 (528)
T COG0365         330 GFIAGRP----PVKNGSSGLPLPGYAVRRVDDEGNPVPPGV-GELVVRLPWPGMALTYWNDPERYKEAYFGRWYRTGDWA  404 (528)
T ss_pred             cccCCCC----CcCCCCCCCCCCCceeEEECCCCCcCCCCc-eEEEEeCCCchhhhhhhCCHHHHHHHHhhceeecCcee
Confidence            5555432    33455569998 899999998899999999 99999986  9999999999999998877799999999


Q ss_pred             EEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          396 YFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       396 ~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      ++|+||++||+||.||+||+.|.+|+|.|||.|.
T Consensus       405 ~~DedGy~~i~GR~DDvI~vsG~Rig~~EvE~~l  438 (528)
T COG0365         405 ERDEDGYFWLHGRSDDVIKVSGKRIGPLEIESVL  438 (528)
T ss_pred             EEccCCCEEEEeeccceEeccCeeccHHHHHHHH
Confidence            9999999999999999999999999999999874

>PLN02614 long-chain acyl-CoA synthetase

Probab=100.00  E-value=7.5e-67  Score=518.93  Aligned_cols=419  Identities=20%  Similarity=0.293  Sum_probs=330.6

Q ss_pred             ccHHHHHHHHHHhcCCcceEEec----C--C--CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHH
Q 014065            4 VTLIGLLNQVIDQFSSKRALSVS----G--K--FDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAV   75 (431)
Q Consensus         4 ~tl~~~l~~~a~~~p~~~a~~~~----~--~--~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~   75 (431)
                      .|+.++|++.++++|+++|+.+.    +  +  +.+||+||+++++++|++|+++|+++||+|+|+++|+++|++++|||
T Consensus        45 ~t~~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~Gd~Vai~~~n~~e~~~~~lA~  124 (666)
T PLN02614         45 DSCWDVFRMSVEKYPNNPMLGRREIVDGKPGKYVWQTYQEVYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEAC  124 (666)
T ss_pred             CcHHHHHHHHHHhCCCCCeEEEecccCCCCCCcEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence            48999999999999999999842    1  1  24899999999999999999999999999999999999999999999


Q ss_pred             HHhCcEEEecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCc-ccccccccccchh------------hhhh
Q 014065           76 IRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNI-SHATATLLDADSE------------LTLS  142 (431)
Q Consensus        76 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~------------~~~~  142 (431)
                      +++|++++|+++.++.+++.++++.++++++|++.+....+......... ...++.+.+....            ..+.
T Consensus       125 ~~~Gav~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~~  204 (666)
T PLN02614        125 NAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGGVSREQKEEAETFGLVIYAWD  204 (666)
T ss_pred             HHcCCEEEEecCCCCHHHHHHHHhccCCCEEEECHHHHHHHHHhcccccccceEEEEeCCCChHHhhhhhhcCcEEEEHH
Confidence            99999999999999999999999999999999987644333221111000 0111111110000            0011


Q ss_pred             hccccccccccccCCCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHh-----cCCCCCeEEEecChhhHHHH
Q 014065          143 LAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVY-----KLTESDSTVIVLPLFHVHGM  217 (431)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~~~  217 (431)
                      .................++++++++|||||||.||||++||.+++..+......+     ++.++|++++.+|++|.+++
T Consensus       205 ~~~~~~~~~~~~~~~~~~~d~a~I~yTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~~  284 (666)
T PLN02614        205 EFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSANAALTVKDVYLSYLPLAHIFDR  284 (666)
T ss_pred             HHHhhcccCCCCCCCCCCCceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhhccccccCCCCCcEEEEeccHHHHHHH
Confidence            0000000000111224578999999999999999999999999998776655443     57789999999999999998


Q ss_pred             HHHHHHHHhcCCEEEeCCCCCCChhhHHHHHHHhcceeeecchHHHHHHHhcccCC------------------------
Q 014065          218 LAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAK------------------------  273 (431)
Q Consensus       218 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~------------------------  273 (431)
                      .. ....+..|+++++.+   +++..+++.+++++||+++++|++++.+.+.....                        
T Consensus       285 ~~-~~~~l~~G~~v~~~~---~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  360 (666)
T PLN02614        285 VI-EECFIQHGAAIGFWR---GDVKLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGNMK  360 (666)
T ss_pred             HH-HHHHHHhCCEEEEeC---CCHHHHHHHHHHhCCeEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHH
Confidence            65 566788999998864   48899999999999999999999999886432100                        


Q ss_pred             --------CC------------CCCCCccEEEeccCCCcHHHHHHHHHHh-CCceecccCcccccCcccCCCCCCCCCCC
Q 014065          274 --------PE------------PVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVLEAYAMTEATHLMSSNPLPEDGPHK  332 (431)
Q Consensus       274 --------~~------------~~~~~l~~i~~~g~~~~~~~~~~~~~~~-~~~i~~~yg~tE~~~~~~~~~~~~~~~~~  332 (431)
                              ..            ...+++|.+++||++++++. ..+.+.+ ++++++.||+||+++..+....  .....
T Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~Gga~l~~~~-~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~--~~~~~  437 (666)
T PLN02614        361 KGQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHV-ESFLRVVACCHVLQGYGLTESCAGTFVSLP--DELDM  437 (666)
T ss_pred             cCCCCcccchHHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHH-HHHHHHhcCCCEEeeCchHhhhhheeeecc--ccCCc
Confidence                    00            00168999999999999875 5666666 5899999999998865544322  12235


Q ss_pred             CCCccccc-cceEEEEC-CC--CCcCCCCceeeEEEeCCccccccccCcchhhhcccCCceecCceEEEcCCCeEEEecc
Q 014065          333 PGSVGRPV-GQEIAILD-EI--GVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGR  408 (431)
Q Consensus       333 ~~~~G~~~-~~~~~i~d-~~--~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~gR  408 (431)
                      .+++|+|+ +++++|+| ++  +.+++.|+.|||+|+||+++.||+++++.+++.|.+|||+|||+|++|+||+|+|+||
T Consensus       438 ~gsvG~p~pg~evki~d~~~~~~~~~~~g~~GEl~vrGp~v~~GY~~~pe~T~~~f~dGw~~TGDlg~~d~dG~l~i~gR  517 (666)
T PLN02614        438 LGTVGPPVPNVDIRLESVPEMEYDALASTPRGEICIRGKTLFSGYYKREDLTKEVLIDGWLHTGDVGEWQPNGSMKIIDR  517 (666)
T ss_pred             CCcccCcCCceEEEEeeecccCcccCCCCCCceEEEcCCcccccccCCHHHhhhhhccCCcccceEEEEcCCCCEEEEEc
Confidence            68999999 89999998 43  4788999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccee-cCCeeccccceeccc
Q 014065          409 IKELIN-RGGNLHESISLFLAK  429 (431)
Q Consensus       409 ~~d~i~-~~G~~i~~~~iE~a~  429 (431)
                      +||+|| .+|++|+|.|||.+.
T Consensus       518 ~kd~ik~~~G~~V~p~eIE~~l  539 (666)
T PLN02614        518 KKNIFKLSQGEYVAVENIENIY  539 (666)
T ss_pred             chhceecCCCeeecHHHHHHHH
Confidence            999999 479999999999764

>PTZ00342 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.7e-66  Score=513.63  Aligned_cols=421  Identities=21%  Similarity=0.276  Sum_probs=337.9

Q ss_pred             CcccHHHHHHHHHHhcCCcceEEec--C--CCcccHHHHHHHHHHHHHHHHHc---CCCCC-----------CEEEEECC
Q 014065            2 EGVTLIGLLNQVIDQFSSKRALSVS--G--KFDLTYSRIHELVERAASRLVAA---GINAG-----------DVVALTFP   63 (431)
Q Consensus         2 ~~~tl~~~l~~~a~~~p~~~a~~~~--~--~~~~Ty~el~~~~~~~a~~L~~~---gl~~g-----------d~V~i~~~   63 (431)
                      .+.|+.++|.++++++|+++|++..  +  .+.+||+|+.++++++|++|.+.   |+++|           |+|+|+++
T Consensus        59 ~~~~l~~~l~~~~~~~p~~~Al~~~~~g~~~~~~Ty~el~~~v~~~A~~L~~~~~~Gv~~g~~~~~~~~g~~d~V~i~~~  138 (746)
T PTZ00342         59 VYKHIMKLLLEKYKLNNNKIAIVEHSCGEPQNYITYGNFFKKVLSFSHSLNTYEGKGIPEKKYNEEQNNGKFKLLGLYGS  138 (746)
T ss_pred             ccchHHHHHHHHHhhcCCceeEeccCCCCCceeeeHHHHHHHHHHHHHHHHHHhhcCCCcCccccccccccccEEEEEcC
Confidence            3678999999999999999999863  2  26899999999999999999974   99998           99999999


Q ss_pred             CcHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCcccccccccccchh-----
Q 014065           64 NTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSE-----  138 (431)
Q Consensus        64 n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  138 (431)
                      |+++|+++.+||+++|++.+|++++++.+++.++++++++++++++.+..+.+.+..........++.+......     
T Consensus       139 N~~ew~~~~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~~~lv~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~  218 (746)
T PTZ00342        139 NSINWLVADLACMLSGVTTLVMHSKFSIDVIVDILNETKLEWLCLDLDLVEGLLERKNELPHLKKLIILDTLIKSKEINI  218 (746)
T ss_pred             CCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHhcCCCCEEEEcHHHHHHHHHhhccCCCceEEEEECCCCccccccc
Confidence            999999999999999999999999999999999999999999999876666555544333221122222110000     


Q ss_pred             ----------------h-----------------------h-----------hhh-ccc-----------c-cccccccc
Q 014065          139 ----------------L-----------------------T-----------LSL-AHS-----------E-SDTNAISK  155 (431)
Q Consensus       139 ----------------~-----------------------~-----------~~~-~~~-----------~-~~~~~~~~  155 (431)
                                      .                       .           +.. ...           . ........
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (746)
T PTZ00342        219 NKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDLKEKAKKLGISIILFDDMTKNKTTNYKI  298 (746)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccchhhhhhhHHHHHHhhcCCCEEEEHHHHHhhcccCCCC
Confidence                            0                       0           000 000           0 00000112


Q ss_pred             CCCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHh--cCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEe
Q 014065          156 LTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVY--KLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTL  233 (431)
Q Consensus       156 ~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~  233 (431)
                      ....+++++.++|||||||.||||++||+++++.+.......  ...+.+++++.+|++|.+++.. .+.+++.|+++++
T Consensus       299 ~~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~~~~~~~~~~~d~~ls~LPL~Hi~~~~~-~~~~l~~G~~i~~  377 (746)
T PTZ00342        299 QNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHSIFKKYNPKTHLSYLPISHIYERVI-AYLSFMLGGTINI  377 (746)
T ss_pred             CCCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHhhcccccCCCCCeEEEeCcHHHHHHHHH-HHHHHHcCCEEEE
Confidence            234678999999999999999999999999998876654321  2335689999999999999976 6778999999998


Q ss_pred             CCCCCCChhhHHHHHHHhcceeeecchHHHHHHHhcccC----CC-----------------------------------
Q 014065          234 PAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVA----KP-----------------------------------  274 (431)
Q Consensus       234 ~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~----~~-----------------------------------  274 (431)
                      .+  . ++..+++.|++++||+++++|++|+.+.+....    .+                                   
T Consensus       378 ~~--~-~~~~l~~di~~~~pT~~~~VP~v~~~i~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~v~~k  454 (746)
T PTZ00342        378 WS--K-DINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKILSLRKSNNNGGFSKFLEGITHISSK  454 (746)
T ss_pred             eC--C-CHHHHHHHHHHhCCcEEEchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHH
Confidence            75  2 789999999999999999999999998753100    00                                   


Q ss_pred             --CCCCCCccEEEeccCCCcHHHHHHHHHHhCCceecccCcccccCcccCCCCCCCCCCCCCCccccc--cceEEEEC-C
Q 014065          275 --EPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV--GQEIAILD-E  349 (431)
Q Consensus       275 --~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~~~G~~~--~~~~~i~d-~  349 (431)
                        ....+++|.+++||+++++++.+.++..+|+++++.||+||+++..+....   ....++++|+|+  +++++++| +
T Consensus       455 ir~~lg~~lr~~~sGGapl~~~~~~~~~~~~g~~i~~gYGlTEt~~~~~~~~~---~~~~~gsvG~p~~pg~e~ki~d~~  531 (746)
T PTZ00342        455 IKDKVNPNLEVILNGGGKLSPKIAEELSVLLNVNYYQGYGLTETTGPIFVQHA---DDNNTESIGGPISPNTKYKVRTWE  531 (746)
T ss_pred             HHHhhCCCeEEEEEcCCCCCHHHHHHHHHhcCCCEEEeeccCcccceeeeccC---CCCCcccccCcCCCcEEEEEeccc
Confidence              001268999999999999999999999899999999999999876665432   235678999996  69999998 4


Q ss_pred             CCCcCCCCceeeEEEeCCccccccccCcchhhhccc-CCceecCceEEEcCCCeEEEeccccccee-cCCeeccccceec
Q 014065          350 IGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFL-FGWFHTGDIGYFDSDGYLHLVGRIKELIN-RGGNLHESISLFL  427 (431)
Q Consensus       350 ~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~g~~~TGD~~~~~~~g~l~~~gR~~d~i~-~~G~~i~~~~iE~  427 (431)
                      ++...+.++.|||+++||+++.||+++++.|++.|. ||||+|||+|++|+||+|+|.||++|+|| .+|++|+|.+||.
T Consensus       532 ~~~~~~~~~~GEl~vrGp~v~~GY~~~pe~T~~~f~~dGW~~TGDig~~d~dG~l~i~gR~kdlIkls~Ge~I~p~eIE~  611 (746)
T PTZ00342        532 TYKATDTLPKGELLIKSDSIFSGYFLEKEQTKNAFTEDGYFKTGDIVQINKNGSLTFLDRSKGLVKLSQGEYIETDMLNN  611 (746)
T ss_pred             ccccCCCCCceEEEEecCcccccccCChhhhhhhcCcCCcccCCcEEEECCCCeEEEEccCCCeEEeCCCEEEchHHHHH
Confidence            444555556799999999999999999999999995 89999999999999999999999999999 6899999999997


Q ss_pred             cc
Q 014065          428 AK  429 (431)
Q Consensus       428 a~  429 (431)
                      +.
T Consensus       612 ~l  613 (746)
T PTZ00342        612 LY  613 (746)
T ss_pred             HH
Confidence            63

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

Probab=100.00  E-value=3.6e-66  Score=488.84  Aligned_cols=408  Identities=32%  Similarity=0.453  Sum_probs=335.6

Q ss_pred             cccHHHHHHHHHHhcCCcceEEecC---CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhC
Q 014065            3 GVTLIGLLNQVIDQFSSKRALSVSG---KFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRAR   79 (431)
Q Consensus         3 ~~tl~~~l~~~a~~~p~~~a~~~~~---~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G   79 (431)
                      ..++.+.+.++++.+|+..++....   .+.+||+|+.+++.++|++|++.|+.+||+|+|++.|+++|+++.+||+.+|
T Consensus        15 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ty~e~~~~v~~~a~gL~~lg~~~gdrvai~a~nr~eW~i~d~a~~~~g   94 (613)
T COG1022          15 IHTLPKRLAERVKDRPDGVALMYKELGGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAILALG   94 (613)
T ss_pred             cccHHHHHHHHhhcCCcceeEeeecCCcceEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHHHHcC
Confidence            4578899999999999988988643   3799999999999999999999999779999999999999999999999999


Q ss_pred             cEEEecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHh-cCc-cccccc---ccccc--hhhhhhhccc------
Q 014065           80 ATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASK-LNI-SHATAT---LLDAD--SELTLSLAHS------  146 (431)
Q Consensus        80 ~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~-~~~-~~~~~~---~~~~~--~~~~~~~~~~------  146 (431)
                      ++.||++++.+.+++.++|+.++++++|++............. ... ......   .....  ....+.....      
T Consensus        95 ~v~Vp~y~t~~~~~~~~iL~~se~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (613)
T COG1022          95 AVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVREAVEAKALVLEVFPDEGISLF  174 (613)
T ss_pred             CeEEecCCCCCHHHHHHHHhcCCceEEEecchHHHHHHHhhhccccchhhhhhhhhhhhhccchhhccccccccccchhh
Confidence            9999999999999999999999999999998644333322221 110 000000   00000  0000000000      


Q ss_pred             --cccccccccCCCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhc-CCCCCeEEEecChhhHHHHHHHHHH
Q 014065          147 --ESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYK-LTESDSTVIVLPLFHVHGMLAGLLS  223 (431)
Q Consensus       147 --~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~  223 (431)
                        .............++|+|.++|||||||.||||++||.|+++++..+....+ ..++|+.++++|+.|.+.+......
T Consensus       175 ~~~~~~~~~~~~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~~~~~~~d~~LsfLPlaHi~Er~~~~~~  254 (613)
T COG1022         175 LIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLPPIGPGDRVLSFLPLAHIFERAFEGGL  254 (613)
T ss_pred             hhcccccccccCCCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhCCCCCCCcEEEEeCcHHHHHHHHHHHHH
Confidence              0000111113567899999999999999999999999999999999999997 9999999999999999999875555


Q ss_pred             HHhcCCEEEeCCCCCCChhhHHHHHHHhcceeeecchHHHHHHHhcccCC------------------------------
Q 014065          224 SFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAK------------------------------  273 (431)
Q Consensus       224 ~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~------------------------------  273 (431)
                      .+..|.++...+    ++..+++.+++++||.++++|.+|+.+-+....+                              
T Consensus       255 ~~~~g~~~~~~~----~~~~~~~dl~~~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~~~~if~~a~~~~~~~~~~~~~~~  330 (613)
T COG1022         255 ALYGGVTVLFKE----DPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKISRALLGG  330 (613)
T ss_pred             HhhcceEEEecC----CHHHHHHHHHHhCCeEEeechHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhccc
Confidence            666666666644    8999999999999999999999999976532110                              


Q ss_pred             -----------------CCCCCCCccEEEeccCCCcHHHHHHHHHHhCCceecccCcccccCcccCCCCCCCCCCCCCCc
Q 014065          274 -----------------PEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSV  336 (431)
Q Consensus       274 -----------------~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~~~  336 (431)
                                       ....-..+|.+++||+++++++...++.. |+++..+||+||+++..+.++.   .....+++
T Consensus       331 ~~~~~~~~~d~LVf~Kir~~lGgri~~~~sGGa~l~~~~~~f~~~l-Gi~i~eGYGlTEts~~~~v~~~---~~~~~gtv  406 (613)
T COG1022         331 GPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSL-GIPILEGYGLTETSAVVSVNPP---DRFVLGTV  406 (613)
T ss_pred             CCcchhhhhhHHHHHHHHHHhCCcEEEEEecCCcCCHHHHHHHHHc-CCCeEEEecccccccceEEccc---cCcccCCc
Confidence                             00112488999999999999999988865 8999999999999999988765   56788899


Q ss_pred             cccc-cceEEEECCCCCcCCCCceeeEEEeCCccccccccCcchhhhccc-CCceecCceEEEcCCCeEEEeccccccee
Q 014065          337 GRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFL-FGWFHTGDIGYFDSDGYLHLVGRIKELIN  414 (431)
Q Consensus       337 G~~~-~~~~~i~d~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~g~~~TGD~~~~~~~g~l~~~gR~~d~i~  414 (431)
                      |.|+ +.+++|.|+          |||+|+||.+++|||++|+.|++.|+ ||||+|||+|.+|++|+|++.||++|.||
T Consensus       407 G~p~p~~evKI~d~----------GEilVRG~~Vm~GYyk~pe~Taeaf~~DGWf~TGDlg~~d~~g~L~i~gRkK~~i~  476 (613)
T COG1022         407 GKPLPGIEVKIADD----------GEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLGELDEDGYLVITGRKKELIK  476 (613)
T ss_pred             CCcCCCceEEEccC----------ceEEEecchhcchhcCChHHHhhhccccCCcccCceeEEcCCCcEEEeecccceEE
Confidence            9998 799999995          99999999999999999999999997 89999999999999999999999999999


Q ss_pred             -cCCeeccccceecc
Q 014065          415 -RGGNLHESISLFLA  428 (431)
Q Consensus       415 -~~G~~i~~~~iE~a  428 (431)
                       .+|++|.|+.||.+
T Consensus       477 l~~GknIaP~~IE~~  491 (613)
T COG1022         477 LSNGKNIAPEPIESK  491 (613)
T ss_pred             CCCCcccChHHHHHH
Confidence             79999999999974

>PLN02736 long-chain acyl-CoA synthetase

Probab=100.00  E-value=8.4e-66  Score=512.86  Aligned_cols=419  Identities=26%  Similarity=0.376  Sum_probs=339.0

Q ss_pred             ccHHHHHHHHHHhcCCcceEEe---cC-----CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHH
Q 014065            4 VTLIGLLNQVIDQFSSKRALSV---SG-----KFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAV   75 (431)
Q Consensus         4 ~tl~~~l~~~a~~~p~~~a~~~---~~-----~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~   75 (431)
                      .|+.++|+..++++|+++|+..   .+     .+.+||+||.++++++|++|+++|+++||+|+++++|+++++++++||
T Consensus        44 ~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~lTy~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~  123 (651)
T PLN02736         44 GTLHDNFVYAVETFRDYKYLGTRIRVDGTVGEYKWMTYGEAGTARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVDHAC  123 (651)
T ss_pred             CCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence            5899999999999999999943   12     145999999999999999999999999999999999999999999999


Q ss_pred             HHhCcEEEecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCcccccccccccchh------------hhhhh
Q 014065           76 IRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSE------------LTLSL  143 (431)
Q Consensus        76 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~  143 (431)
                      +++|++++|+++.++.+++.++++.++++++|++.+..+.+.............+........            ..+..
T Consensus       124 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~  203 (651)
T PLN02736        124 SAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLNTLLSCLSEIPSVRLIVVVGGADEPLPSLPSGTGVEIVTYSK  203 (651)
T ss_pred             HHcCCeEEEeecCCCHHHHHHHHhccCCCEEEECHHHHHHHHHHhhcCCCceEEEEECCCchhhhhhhccCCcEEEEHHH
Confidence            999999999999999999999999999999999877655554443322211111111110000            00000


Q ss_pred             ccccccccccccCCCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHHHHHHHHHH
Q 014065          144 AHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLS  223 (431)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  223 (431)
                      ................++++++++|||||||.||+|++||+++..++......+++.++|++++.+|++|.+++.. ++.
T Consensus       204 ~~~~~~~~~~~~~~~~~dd~a~IlyTSGTTG~PKGV~lsh~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~-~~~  282 (651)
T PLN02736        204 LLAQGRSSPQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLSTKFYPSDVHISYLPLAHIYERVN-QIV  282 (651)
T ss_pred             HHHhcccCCCCCCCCCccceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhccCCCCCCEEEEeCCHHHHHHHHH-HHH
Confidence            0000000011122346789999999999999999999999999999888888888999999999999999999976 788


Q ss_pred             HHhcCCEEEeCCCCCCChhhHHHHHHHhcceeeecchHHHHHHHhcccC----------------------------CCC
Q 014065          224 SFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVA----------------------------KPE  275 (431)
Q Consensus       224 ~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~----------------------------~~~  275 (431)
                      ++..|+++++.+.   ++..+++.|+++++|+++.+|++++.+.+....                            ...
T Consensus       283 ~l~~G~~i~~~~~---~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (651)
T PLN02736        283 MLHYGVAVGFYQG---DNLKLMDDLAALRPTIFCSVPRLYNRIYDGITNAVKESGGLKERLFNAAYNAKKQALENGKNPS  359 (651)
T ss_pred             HHHcCCEEEEeCC---CHHHHHHHHHHhCCcEEecchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            8999999988752   788999999999999999999999888654210                            000


Q ss_pred             C------------CC-CCccEEEeccCCCcHHHHHHHHHHhCCceecccCcccccCcccCCCCCCCCCCCCCCccccc-c
Q 014065          276 P------------VY-PKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-G  341 (431)
Q Consensus       276 ~------------~~-~~l~~i~~~g~~~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~~~G~~~-~  341 (431)
                      .            .+ +++|.+++||+++++++.+++.+.+++++++.||+||+++.++....   .....+++|+|+ +
T Consensus       360 ~~~~~~~~~~~~~~lg~~lr~~~~gGa~l~~~~~~~~~~~~g~~~~~~YG~TE~~~~~~~~~~---~~~~~~~vG~p~pg  436 (651)
T PLN02736        360 PMWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICFGGRVLEGYGMTETSCVISGMDE---GDNLSGHVGSPNPA  436 (651)
T ss_pred             chHHHHHHHHHHHHhcCcEEEEEeCCCCCCHHHHHHHHHHhCCCeEEEechHHhchheeccCC---CCCCCCccCCccCc
Confidence            0            01 48999999999999999999998899999999999999876655432   234678999999 8


Q ss_pred             ceEEEECC-CCC---cCCCCceeeEEEeCCccccccccCcchhhhccc-CCceecCceEEEcCCCeEEEecccccceec-
Q 014065          342 QEIAILDE-IGV---PQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFL-FGWFHTGDIGYFDSDGYLHLVGRIKELINR-  415 (431)
Q Consensus       342 ~~~~i~d~-~~~---~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~g~~~TGD~~~~~~~g~l~~~gR~~d~i~~-  415 (431)
                      ++++|+|. ++.   ....++.|||+++||+++.||+++++.+++.|. +|||+|||+|++|+||+++|.||.||+||+ 
T Consensus       437 ~~v~i~d~~~~~~~~~~~~~~~GEl~vrgp~v~~GY~~~~~~t~~~~~~dgw~~TGDlg~~d~dG~l~i~GR~kd~ik~~  516 (651)
T PLN02736        437 CEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTREVIDEDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLA  516 (651)
T ss_pred             eEEEEEEccccCcccCCCCCCCceEEecCCccccccccCHHHHHhhhccCCCeeccceEEEcCCCcEEEEEechhheEcC
Confidence            99999983 322   223335799999999999999999999998884 799999999999999999999999999995 


Q ss_pred             CCeeccccceeccc
Q 014065          416 GGNLHESISLFLAK  429 (431)
Q Consensus       416 ~G~~i~~~~iE~a~  429 (431)
                      +|++|+|.|||.+.
T Consensus       517 ~G~~V~p~eIE~~l  530 (651)
T PLN02736        517 QGEYIAPEKIENVY  530 (651)
T ss_pred             CCcEechHHHHHHH
Confidence            79999999999874

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=1.9e-66  Score=445.04  Aligned_cols=422  Identities=25%  Similarity=0.363  Sum_probs=362.4

Q ss_pred             CcccHHHHHHHHHHhcCCcceEEecCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcE
Q 014065            2 EGVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARAT   81 (431)
Q Consensus         2 ~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~   81 (431)
                      .+.|+.++|.++|+++||++|+++.+ +.+||+||+++++++|.+|++.|+++||+|.+.+||..++++++||++++|+.
T Consensus        26 ~d~~l~d~L~~~A~~~pdriAv~d~~-~~~sY~eLdqr~d~LAa~l~~lGi~~Gd~vlvQLpN~~ef~~~~FALlrlGv~  104 (542)
T COG1021          26 QDRTLTDILTDHAARYPDRIAVIDGE-RRLSYAELDQRADRLAAGLRRLGIKPGDTVLVQLPNVAEFYITFFALLRLGVA  104 (542)
T ss_pred             cCCcHHHHHHHHHhhcCCceEEecCc-ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCchHHHHHHHHHHHHcCcc
Confidence            46799999999999999999999755 68999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHHHHhcCCceEEEecCC-----chhHHHHHHHhcCcccccccccccchhhhhhhccccccccccccC
Q 014065           82 AAPLNAAYTPDEFEFYLSDSESKLLLTPAE-----GNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKL  156 (431)
Q Consensus        82 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (431)
                      +|.-=|.....+|.+......++.+|++..     ..+...+...+......++...+.+....+............+.+
T Consensus       105 PVlALpsHr~~Ei~~f~~~~e~~~~i~~~~~~gFd~~~~ar~~~a~~~tlr~v~v~ge~~~~~~~~~~~~~~a~~~~~a~  184 (542)
T COG1021         105 PVLALPSHRASELGAFASQIEAALLIVARQHSGFDYRPFARELVAKHPTLRHVIVAGEAEHPSVLEAALCHPAGLFTPAP  184 (542)
T ss_pred             hhhccchhhHHHHHHHHHhhcchheeechhhcccCcHHHHHHHHhhCCcceEEEEccCCCCcchhhhhhhCccccCCcCC
Confidence            999889888999999999999999999864     334444444443332222222222111111111111222334456


Q ss_pred             CCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHHHHHH-HHHHHHhcCCEEEeCC
Q 014065          157 TNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLA-GLLSSFAAGAAVTLPA  235 (431)
Q Consensus       157 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~l~~G~~~~~~~  235 (431)
                      +.++++++++..+.||||.||.+..+|+....+++.-.+.+++++++++++.+|..|.+.+.. +.++.+..|+++|+.+
T Consensus       185 ~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~aSaEiC~~~~~tvyL~~LP~AHNfplssPG~LGv~~agG~VVla~  264 (542)
T COG1021         185 PADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEICGFDQQTVYLCALPAAHNFPLSSPGALGVFLAGGTVVLAP  264 (542)
T ss_pred             CCCCCceEEEEecCCCCCCCccccccccceeeeeeehhhhhCcCccceEEEecccccCCCCCCcchhheeeeccEEEECC
Confidence            678899999999999999999999999999999999999999999999999999999887654 7889999999999988


Q ss_pred             CCCCChhhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHhCCceecccCccc
Q 014065          236 AGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTE  315 (431)
Q Consensus       236 ~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~i~~~yg~tE  315 (431)
                        ..++......|+++++|+..++|.....+++..+.. ..+++|||.+..||..+++.+.+++...+||++.+.+||.|
T Consensus       265 --~psp~~~F~lIerh~Vt~tALVPpla~LWlqa~e~~-~~~LsSLrllQVGGarl~~~~Arrv~~~lgC~LQQVFGMAE  341 (542)
T COG1021         265 --DPSPELCFPLIERHGVTVTALVPPLASLWLQAAEWE-RADLSSLRLLQVGGARLSATLARRVPAVLGCQLQQVFGMAE  341 (542)
T ss_pred             --CCCHHHHHHHHHHhccceEEeccHHHHHHHHhhhcc-cCCchheeEEeecCcccCHHHHhhchhhhCchHHHHhhhhh
Confidence              679999999999999999999999999999988764 56799999999999999999999999999999999999999


Q ss_pred             ccCcccCCCCCCCCCCCCCCccccc-c-ceEEEECCCCCcCCCCceeeEEEeCCccccccccCcchhhhcc-cCCceecC
Q 014065          316 ATHLMSSNPLPEDGPHKPGSVGRPV-G-QEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAF-LFGWFHTG  392 (431)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~G~~~-~-~~~~i~d~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TG  392 (431)
                      .-.  .+...++..+....+-|+|+ + .+++|+|.+|++++.||+|+|..+||...+|||+.++.++..| .+|||+||
T Consensus       342 GLv--nyTRLDDp~E~i~~TQGrPlsP~DEvrvvD~dg~pv~pGE~G~LltRGPYTirGYyrap~HNa~aF~a~GFYrsG  419 (542)
T COG1021         342 GLV--NYTRLDDPPEIIIHTQGRPLSPDDEVRVVDADGNPVAPGEVGELLTRGPYTIRGYYRAPEHNARAFDADGFYRSG  419 (542)
T ss_pred             hhh--cccccCCchHheeecCCCcCCCcceeEEecCCCCCCCCCCcceeeecCCeeeeeeccCchhhhhccCcCCceecC
Confidence            543  33333344455567899999 5 8999999999999999999999999999999999999999999 46999999


Q ss_pred             ceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          393 DIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       393 D~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      |++++|+||++.+.||.||+|+.+|++|-.+|||-..
T Consensus       420 D~V~~~~dGyl~V~GR~KDQINRgGEKIAAeEvEn~L  456 (542)
T COG1021         420 DLVRRDPDGYLVVEGRVKDQINRGGEKIAAEEVENLL  456 (542)
T ss_pred             ceeEecCCceEEEEeeehhhhccccchhhHHHHHHHH
Confidence            9999999999999999999999999999999999653

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=8.4e-65  Score=495.14  Aligned_cols=420  Identities=21%  Similarity=0.312  Sum_probs=343.6

Q ss_pred             cccHHHHHHHHHHhcCCcceEEecCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcEE
Q 014065            3 GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATA   82 (431)
Q Consensus         3 ~~tl~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~   82 (431)
                      ..++.+.|.+.++++|++.|+.+.+.+++||+||.++++++|+.|.+.   +||+|+++++|++++++++|||+++|+++
T Consensus        18 ~~~~~~~~~~~~~~~p~~~a~~~~~~~~~Ty~el~~~~~~lA~~L~~~---~gd~Val~~~n~~e~~~~~lA~~~~G~v~   94 (539)
T PRK06334         18 GKTVLESFLKLCSEMTTATVCWDEQLGKLSYNQVRKAVIALATKVSKY---PDQHIGIMMPASAGAYIAYFATLLSGKIP   94 (539)
T ss_pred             CCcHHHHHHHHHHhCCCceEEEeCCCCcccHHHHHHHHHHHHHHHhhc---cCCeEEEEcCCchHHHHHHHHHHhcCCee
Confidence            468999999999999999999876556999999999999999999873   89999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHh-cCcccccccccccchhhhhhh----cc-ccccc----cc
Q 014065           83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASK-LNISHATATLLDADSELTLSL----AH-SESDT----NA  152 (431)
Q Consensus        83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~----~~  152 (431)
                      +|+++.++.+++.++++.+++++++++.+....+.+.... .......+...+......+..    .. .....    ..
T Consensus        95 vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (539)
T PRK06334         95 VMINWSQGLREVTACANLVGVTHVLTSKQLMQHLAQTHGEDAEYPFSLIYMEEVRKELSFWEKCRIGIYMSIPFEWLMRW  174 (539)
T ss_pred             EecCcccchHHHHHHHHHcCCCEEEehHHHHHHHhhhhhccccccccEEEEehhhhhccHHHhhhhhhhhcCCchhhhhc
Confidence            9999999999999999999999999987655444333211 001111111111000000000    00 00000    00


Q ss_pred             cccCCCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEE
Q 014065          153 ISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVT  232 (431)
Q Consensus       153 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~  232 (431)
                      .......++++++++|||||||.||+|.++|+++..+.......+++.++|++++.+|++|.+++...++.++..|++++
T Consensus       175 ~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~vv  254 (539)
T PRK06334        175 FGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFSPKEDDVMMSFLPPFHAYGFNSCTLFPLLSGVPVV  254 (539)
T ss_pred             ccCCCCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCCCceEEEecchHhhhhhHHHHHHHHHcCCeEE
Confidence            01223467899999999999999999999999999888777778888999999999999999999877888999999998


Q ss_pred             eCCCCCCChhhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHh-CCceeccc
Q 014065          233 LPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVLEAY  311 (431)
Q Consensus       233 ~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~-~~~i~~~y  311 (431)
                      +... .+++..+++.|+++++|++.++|++++.+++..... ...++++|.+++||+++++++.+++.+.+ ++.+++.|
T Consensus       255 ~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~Y  332 (539)
T PRK06334        255 FAYN-PLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQ-ESCLPSLRFVVIGGDAFKDSLYQEALKTFPHIQLRQGY  332 (539)
T ss_pred             EecC-CCCHHHHHHHHHHhCCcEEEecHHHHHHHHHhhhhc-ccccccccEEEECCccCCHHHHHHHHHHCCCCeEEecc
Confidence            8653 578999999999999999999999999998765432 34578999999999999999999999988 68999999


Q ss_pred             CcccccCcccCCCCCCCCCCCCCCccccc-cceEEEECC-CCCcCCCCceeeEEEeCCccccccccCcchhhhcc--cCC
Q 014065          312 AMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDE-IGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAF--LFG  387 (431)
Q Consensus       312 g~tE~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d~-~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~--~~g  387 (431)
                      |+||++.+++....  ......+++|+|+ +++++|+|+ .+.+++.|+.|||+++|++++.||+++++.+....  .+|
T Consensus       333 G~TE~~~~~~~~~~--~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~  410 (539)
T PRK06334        333 GTTECSPVITINTV--NSPKHESCVGMPIRGMDVLIVSEETKVPVSSGETGLVLTRGTSLFSGYLGEDFGQGFVELGGET  410 (539)
T ss_pred             cccccCceEEeccC--CCCCCCCcCceecCCCEEEEEcCCCCccCCCCceEEEEEecCcccccccCCcccccceeeCCce
Confidence            99999877665432  2233456899999 899999995 48899999999999999999999999887644322  257


Q ss_pred             ceecCceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          388 WFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       388 ~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      ||+|||+|++|++|++++.||.+|+||++|++|+|.|||.+.
T Consensus       411 w~~TGD~g~~d~~G~l~~~GR~~d~ik~~G~~v~p~eIE~~l  452 (539)
T PRK06334        411 WYVTGDLGYVDRHGELFLKGRLSRFVKIGAEMVSLEALESIL  452 (539)
T ss_pred             eEECCCEEEECCCCeEEEEeccCCeEEECCEEECHHHHHHHH
Confidence            999999999999999999999999999999999999999864

>PLN02861 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=8.1e-65  Score=504.86  Aligned_cols=418  Identities=22%  Similarity=0.312  Sum_probs=329.7

Q ss_pred             ccHHHHHHHHHHhcCCcceEEec----C----CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHH
Q 014065            4 VTLIGLLNQVIDQFSSKRALSVS----G----KFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAV   75 (431)
Q Consensus         4 ~tl~~~l~~~a~~~p~~~a~~~~----~----~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~   75 (431)
                      .|+.++|++.++++|+++|+...    +    .+++||+||.++++++|++|.+.|+++||+|+|+++|+++|++++|||
T Consensus        43 ~t~~~~l~~~~~~~p~~~al~~~~~~~~~~g~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~  122 (660)
T PLN02861         43 DSPWQFFSDAVKKYPNNQMLGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEAC  122 (660)
T ss_pred             CCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence            48899999999999999999642    1    147999999999999999999999999999999999999999999999


Q ss_pred             HHhCcEEEecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcC-cccccccccccchh------------hhhh
Q 014065           76 IRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLN-ISHATATLLDADSE------------LTLS  142 (431)
Q Consensus        76 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~------------~~~~  142 (431)
                      +++|++++|+++.++.+++.+++++++++++|++.+..+.+........ ....++.+.+....            ..+.
T Consensus       123 ~~~G~v~vpl~~~~~~~~l~~il~~s~~~~v~~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~  202 (660)
T PLN02861        123 NSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKISSILSCLPKCSSNLKTIVSFGDVSSEQKEEAEELGVSCFSWE  202 (660)
T ss_pred             HHcCCeEEEecCCCCHHHHHHHHHcCCCCEEEECHHHHHHHHHhhhhCCCCCEEEEEECCCChhhhhhhhcCCcEEEEHH
Confidence            9999999999999999999999999999999998765544433332211 11111111110000            0011


Q ss_pred             hccccccccccccCCCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhc-----CCCCCeEEEecChhhHHHH
Q 014065          143 LAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYK-----LTESDSTVIVLPLFHVHGM  217 (431)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~-----~~~~~~~~~~~p~~~~~~~  217 (431)
                      ....... .........++++++++|||||||.||||++||.+++..+......++     +.++|++++.+|++|.+++
T Consensus       203 ~~~~~~~-~~~~~~~~~~dd~a~i~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~~  281 (660)
T PLN02861        203 EFSLMGS-LDCELPPKQKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAHVYDQ  281 (660)
T ss_pred             HHHHhCc-ccCCCCccCCCceEEEEecCCCCCCCCEEEEecHHHHHHHHHHHhccccccccCCCCCEEEEECcHHHHHHH
Confidence            0000000 011122345789999999999999999999999999988776555443     4678999999999999998


Q ss_pred             HHHHHHHHhcCCEEEeCCCCCCChhhHHHHHHHhcceeeecchHHHHHHHhcccC-------------------------
Q 014065          218 LAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVA-------------------------  272 (431)
Q Consensus       218 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~-------------------------  272 (431)
                      .. .+.+++.|+++++.+   +++..+++.|++++||+++++|++++.+.+....                         
T Consensus       282 ~~-~~~~l~~G~~v~~~~---~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~  357 (660)
T PLN02861        282 VI-ETYCISKGASIGFWQ---GDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKISSGGMLRKKLFDFAYNYKLGNLR  357 (660)
T ss_pred             HH-HHHHHHhCCEEEEeC---CCHHHHHHHHHHhCCcEEeechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHh
Confidence            76 556899999998864   4789999999999999999999999988642100                         


Q ss_pred             --------CCCC----------CC-CCccEEEeccCCCcHHHHHHHHHHhC-CceecccCcccccCcccCCCCCCCCCCC
Q 014065          273 --------KPEP----------VY-PKLRFIRSCSASLAPVILSRLEEAFG-APVLEAYAMTEATHLMSSNPLPEDGPHK  332 (431)
Q Consensus       273 --------~~~~----------~~-~~l~~i~~~g~~~~~~~~~~~~~~~~-~~i~~~yg~tE~~~~~~~~~~~~~~~~~  332 (431)
                              ....          .+ +++|.+++||+++++++. .+.+.++ ..+++.||+||+++.++.....  ....
T Consensus       358 ~~~~~~~~~~~~~~~~~~~~r~~lg~~lr~~~~Ggapl~~~~~-~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~--~~~~  434 (660)
T PLN02861        358 KGLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVE-EFLRVTSCSVLSQGYGLTESCGGCFTSIAN--VFSM  434 (660)
T ss_pred             cCCCCcCccHhHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHH-HHHHHHcCCCeeEecchhhhhhceeecccc--cCCC
Confidence                    0000          01 578999999999999975 4666666 4799999999998765543321  2234


Q ss_pred             CCCccccc-cceEEEEC--CCC-CcCCCCceeeEEEeCCccccccccCcchhhhcccCCceecCceEEEcCCCeEEEecc
Q 014065          333 PGSVGRPV-GQEIAILD--EIG-VPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGR  408 (431)
Q Consensus       333 ~~~~G~~~-~~~~~i~d--~~~-~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~gR  408 (431)
                      .+++|+|+ +++++++|  ++| ..++.++.|||+++||+++.||+++++.+++.|.+|||+|||+|++|+||+|+|.||
T Consensus       435 ~gsvG~p~p~~ev~i~d~~~~g~~~~~~~~~GEi~vrGp~v~~GY~~~pe~T~~~f~dGw~~TGDlg~~d~dG~l~i~GR  514 (660)
T PLN02861        435 VGTVGVPMTTIEARLESVPEMGYDALSDVPRGEICLRGNTLFSGYHKRQDLTEEVLIDGWFHTGDIGEWQPNGAMKIIDR  514 (660)
T ss_pred             CCCccCccCceEEEEEEccccCcccCCCCCceeEEEcCCcccccccCCHHHHHhhhhccCcccCceEEECCCCcEEEEec
Confidence            68999999 89999998  334 344556789999999999999999999999999999999999999999999999999


Q ss_pred             cccceec-CCeeccccceeccc
Q 014065          409 IKELINR-GGNLHESISLFLAK  429 (431)
Q Consensus       409 ~~d~i~~-~G~~i~~~~iE~a~  429 (431)
                      +||+||. +|++|+|.|||.+.
T Consensus       515 ~kd~Ik~~~G~~I~p~eIE~~l  536 (660)
T PLN02861        515 KKNIFKLSQGEYVAVENLENTY  536 (660)
T ss_pred             cccceEcCCCeEEcHHHHHHHH
Confidence            9999995 89999999999763

>PTZ00237 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.1e-64  Score=499.57  Aligned_cols=422  Identities=20%  Similarity=0.209  Sum_probs=332.7

Q ss_pred             cHHHHHHHHHHh--cCCcceEEecC-----CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHH
Q 014065            5 TLIGLLNQVIDQ--FSSKRALSVSG-----KFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIR   77 (431)
Q Consensus         5 tl~~~l~~~a~~--~p~~~a~~~~~-----~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~   77 (431)
                      +..++++++++.  +|+++|+++..     .+++||+||.++++++|++|+++|+++||+|+++++|++++++++|||++
T Consensus        60 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GDrV~i~~~n~~e~~~~~lA~~~  139 (647)
T PTZ00237         60 TCYNVLDIHVKNPLKRDQDALIYECPYLKKTIKLTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEPLIAMLSCAR  139 (647)
T ss_pred             HHHHHHHHhhcccCCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence            346677777754  79999998741     25899999999999999999999999999999999999999999999999


Q ss_pred             hCcEEEecCCCCCHHHHHHHHhcCCceEEEecCCc---------hhHHHHHHHhcCcc-ccccccc-cc-----------
Q 014065           78 ARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEG---------NAAAQAAASKLNIS-HATATLL-DA-----------  135 (431)
Q Consensus        78 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~---------~~~~~~~~~~~~~~-~~~~~~~-~~-----------  135 (431)
                      +|++++|+++.++.+++.+++++++++++|+++..         .+...+........ ..++... ..           
T Consensus       140 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~  219 (647)
T PTZ00237        140 IGATHCVLFDGYSVKSLIDRIETITPKLIITTNYGILNDEIITFTPNLKEAIELSTFKPSNVITLFRNDITSESDLKKIE  219 (647)
T ss_pred             hCcEEEeeCCCCCHHHHHHHHHhcCCCEEEEcccceeCCceechHHHHHHHHhcccCCCCEEEEEEcCCccccccccccc
Confidence            99999999999999999999999999999997631         12222222211100 0111110 00           


Q ss_pred             -----chhhhhhhccc----cccccccccCCCCCCCeEEEEeccCCCCCCCeeeechHH-HHHHHHHHHHHhcCCCCCeE
Q 014065          136 -----DSELTLSLAHS----ESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNN-LAASVSNIKSVYKLTESDST  205 (431)
Q Consensus       136 -----~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~-l~~~~~~~~~~~~~~~~~~~  205 (431)
                           .....+.....    .............++++++++|||||||.||+|+++|.+ +...............++++
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~~d~~  299 (647)
T PTZ00237        220 TIPTIPNTLSWYDEIKKIKENNQSPFYEYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHLVGLKYYWRSIIEKDIPTVV  299 (647)
T ss_pred             ccCCCcccccHHHHHhhhccccCCCCCCceeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHHHHHHHHHHHhcCCCCCcEE
Confidence                 00000000000    000011112345678999999999999999999999998 44433333455567788999


Q ss_pred             EEecChhhHHHHHHHHHHHHhcCCEEEeCCCCCCC----hhhHHHHHHHhcceeeecchHHHHHHHhcccC----CCCCC
Q 014065          206 VIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFS----ASTFWQDMIKYNATWYTAVPTIHQIVLDRHVA----KPEPV  277 (431)
Q Consensus       206 ~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~----~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~----~~~~~  277 (431)
                      ++..|++|..+... ++.++..|+++++.+...+.    +..+++.|+++++|+++.+|++++.+++....    ....+
T Consensus       300 ~~~~~~~w~~~~~~-~~~~l~~G~t~v~~~~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~  378 (647)
T PTZ00237        300 FSHSSIGWVSFHGF-LYGSLSLGNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDPEATIIRSKYD  378 (647)
T ss_pred             EEcCCCceEeeHHH-HHHHHhCCcEEEEeCCCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhhCccccccccccC
Confidence            99999999876544 88899999999987643222    67899999999999999999999999875422    12345


Q ss_pred             CCCccEEEeccCCCcHHHHHHHHHHhCCceecccCcccccCcccCCCCCCCCCCCCCCccccc-cceEEEECCCCCcCCC
Q 014065          278 YPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEG  356 (431)
Q Consensus       278 ~~~l~~i~~~g~~~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d~~~~~~~~  356 (431)
                      ++++|.++++|+++++++++++.+.+++++++.||+||+++.+.....  ......+++|+|+ +++++|+|++|++++.
T Consensus       379 l~~Lr~i~~~G~~l~~~~~~~~~~~~g~~i~~~yG~TE~~~~~~~~~~--~~~~~~~s~G~p~~g~~~~i~d~~g~~~~~  456 (647)
T PTZ00237        379 LSNLKEIWCGGEVIEESIPEYIENKLKIKSSRGYGQTEIGITYLYCYG--HINIPYNATGVPSIFIKPSILSEDGKELNV  456 (647)
T ss_pred             cchheEEEecCccCCHHHHHHHHHhcCCCEEeeechHHhChhhhccCC--CCCCCCCCCccCcCCceEEEECCCCCCCCC
Confidence            789999999999999999999999999999999999999866554322  1223347899999 8999999999999999


Q ss_pred             CceeeEEEeCC---ccccccccCcchhhhccc--CCceecCceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          357 GAKGEVCIRGP---NVTKGYKNNPEANKSAFL--FGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       357 ~~~Gel~v~~~---~~~~gy~~~~~~~~~~~~--~g~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      |+.|||++++|   +++.||+++++.+.+.|.  +|||+|||+|++|+||++++.||.||+||++|++|+|.|||.+.
T Consensus       457 ge~GEl~v~~p~~p~~~~gy~~~~~~~~~~f~~~~g~~~TGDlg~~d~dG~l~i~GR~dd~i~~~G~rI~p~eIE~~l  534 (647)
T PTZ00237        457 NEIGEVAFKLPMPPSFATTFYKNDEKFKQLFSKFPGYYNSGDLGFKDENGYYTIVSRSDDQIKISGNKVQLNTIETSI  534 (647)
T ss_pred             CCceEEEEeccCCchhhCceeCCHHHHHHHHhCCCCEEECCcEEEECCCCeEEEEeccCCEEEECCEEeCHHHHHHHH
Confidence            99999999986   789999999998887674  69999999999999999999999999999999999999999863

>PRK07788 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.5e-64  Score=492.87  Aligned_cols=414  Identities=27%  Similarity=0.369  Sum_probs=345.6

Q ss_pred             ccHHHHHHHHHHhcCCcceEEecCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcEEE
Q 014065            4 VTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAA   83 (431)
Q Consensus         4 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v   83 (431)
                      .|+.++|++.|+.+|+++|+++.+ +++||+||.++++++|++|.+.|+++||+|+++++|+++++++++||+++|++++
T Consensus        49 ~~~~~~~~~~a~~~pd~~Al~~~~-~~~Ty~el~~~~~~la~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v  127 (549)
T PRK07788         49 GPFAGLVAHAARRAPDRAALIDER-GTLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAAGKVGARII  127 (549)
T ss_pred             chHHHHHHHHHHHCCCceEEEECC-CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCEEE
Confidence            478999999999999999999754 6999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCccccccccccc-----chhhhhhhccccccccccccCCC
Q 014065           84 PLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDA-----DSELTLSLAHSESDTNAISKLTN  158 (431)
Q Consensus        84 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~  158 (431)
                      |+++.++.+++.++++.++++++|++.+....+...................     .....+.......   .......
T Consensus       128 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  204 (549)
T PRK07788        128 LLNTGFSGPQLAEVAAREGVKALVYDDEFTDLLSALPPDLGRLRAWGGNPDDDEPSGSTDETLDDLIAGS---STAPLPK  204 (549)
T ss_pred             EeCCCCCHHHHHHHHHhcCCcEEEECchhHHHHHhhccccccceEEEEecCccccCCcCcccHHHHhcCC---CCCCCCC
Confidence            9999999999999999999999999987665554432211110000000000     0000111100000   0111223


Q ss_pred             CCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCCCCC
Q 014065          159 DPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGR  238 (431)
Q Consensus       159 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~  238 (431)
                      ..++.++++|||||||.||+|.++|.++...+......+++.++++++...|++|.+++.. ++.++..|+++++..  .
T Consensus       205 ~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~-~~~~l~~G~~~v~~~--~  281 (549)
T PRK07788        205 PPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRVPFRAGETTLLPAPMFHATGWAH-LTLAMALGSTVVLRR--R  281 (549)
T ss_pred             CCCCCcEEEECCCCCCCCCEEeccCccHHHHHHHHHhhCCCCcCCeEEEccchHHHHHHHH-HHHHHHhCCEEEECC--C
Confidence            4567899999999999999999999999988888888888999999999999999999876 777899999999986  7


Q ss_pred             CChhhHHHHHHHhcceeeecchHHHHHHHhcccC-CCCCCCCCccEEEeccCCCcHHHHHHHHHHhCCceecccCccccc
Q 014065          239 FSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVA-KPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEAT  317 (431)
Q Consensus       239 ~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~-~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~i~~~yg~tE~~  317 (431)
                      +++..+++.++++++|++.++|+++..+++.... ....+++++|.+++||+++++++.+++.+.++..+++.||+||++
T Consensus       282 ~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~  361 (549)
T PRK07788        282 FDPEATLEDIAKHKATALVVVPVMLSRILDLGPEVLAKYDTSSLKIIFVSGSALSPELATRALEAFGPVLYNLYGSTEVA  361 (549)
T ss_pred             CCHHHHHHHHHHhCCcEEEEHHHHHHHHHhCcccccCCCCCCceeEEEEeCCCCCHHHHHHHHHHhCccceeccCcchhc
Confidence            8999999999999999999999999999887543 123457899999999999999999999999999999999999998


Q ss_pred             CcccCCCCCCCCCCCCCCccccc-cceEEEECCCCCcCCCCceeeEEEeCCccccccccCcchhhhcccCCceecCceEE
Q 014065          318 HLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGY  396 (431)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~  396 (431)
                      ..+....  .+....++++|+|+ +++++++|+++++++.|+.|||+++|+.++.||++++..   ...+|||+|||+++
T Consensus       362 ~~~~~~~--~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~---~~~~g~~~TGDl~~  436 (549)
T PRK07788        362 FATIATP--EDLAEAPGTVGRPPKGVTVKILDENGNEVPRGVVGRIFVGNGFPFEGYTDGRDK---QIIDGLLSSGDVGY  436 (549)
T ss_pred             hhhccCh--hhhhhcCCCcccCCCCcEEEEECCCcCCCCCCCeEEEEEeCCCccccccCCCcc---cccCCceecCceEE
Confidence            6655433  22244567899999 899999999999999999999999999999999987764   34579999999999


Q ss_pred             EcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          397 FDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       397 ~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      +|+||++++.||.||+||++|++|+|.|||.+.
T Consensus       437 ~~~~g~l~~~GR~dd~i~~~G~~v~p~eIE~~l  469 (549)
T PRK07788        437 FDEDGLLFVDGRDDDMIVSGGENVFPAEVEDLL  469 (549)
T ss_pred             EcCCCCEEEeccCcceEEECCEEECHHHHHHHH
Confidence            999999999999999999999999999999863

>PRK07529 AMP-binding domain protein; Validated

Probab=100.00  E-value=4e-63  Score=491.61  Aligned_cols=420  Identities=30%  Similarity=0.429  Sum_probs=340.4

Q ss_pred             ccHHHHHHHHHHhcCCcceEEec-------CCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHH
Q 014065            4 VTLIGLLNQVIDQFSSKRALSVS-------GKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVI   76 (431)
Q Consensus         4 ~tl~~~l~~~a~~~p~~~a~~~~-------~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~   76 (431)
                      .|+.++|.+.|+.+|+++|+++.       +.+++||+||.++++++|++|++.|+++||+|+++++|+++++++++||+
T Consensus        25 ~t~~~~l~~~a~~~p~~~Al~~~~~~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gi~~gd~V~i~~~n~~e~~~~~lA~~  104 (632)
T PRK07529         25 ASTYELLSRAAARHPDAPALSFLLDADPLDRPETWTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALWGGE  104 (632)
T ss_pred             CCHHHHHHHHHHHCCCCceEEeecccCCCCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHH
Confidence            47899999999999999999863       24799999999999999999999999999999999999999999999999


Q ss_pred             HhCcEEEecCCCCCHHHHHHHHhcCCceEEEecCCchh-----HHHHHHHhcCcccccccccccc---------------
Q 014065           77 RARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNA-----AAQAAASKLNISHATATLLDAD---------------  136 (431)
Q Consensus        77 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~---------------  136 (431)
                      ++| +++|+++.++.+++.++++.++++++|++.....     ...............+.+....               
T Consensus       105 ~~G-i~~pi~~~~~~~~i~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  183 (632)
T PRK07529        105 AAG-IANPINPLLEPEQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVLAALPELRTVVEVDLARYLPGPKRLAVPLIRR  183 (632)
T ss_pred             HhC-EEEeCCCcCCHHHHHHHHHhcCCcEEEEeCCCCCchHHHHHHHHHhcCCcceeEEEecCccccccccccccccccc
Confidence            999 5699999999999999999999999999865421     2222222111111111111000               


Q ss_pred             ----hhhhhhhcccccc-ccccccCCCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecCh
Q 014065          137 ----SELTLSLAHSESD-TNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPL  211 (431)
Q Consensus       137 ----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~  211 (431)
                          ....+........ ..........++++++++|||||||.||+|.++|.+++.++......+++.+++++++.+|+
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~pl  263 (632)
T PRK07529        184 KAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLLGLGPGDTVFCGLPL  263 (632)
T ss_pred             ccccccCCHHHHHhcCCCccccccCCCCcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHHhcCCCCCCEEEEecCc
Confidence                0000110000000 01111223467899999999999999999999999999888777777888999999999999


Q ss_pred             hhHHHHHHHHHHHHhcCCEEEeCCCCCCC----hhhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEec
Q 014065          212 FHVHGMLAGLLSSFAAGAAVTLPAAGRFS----ASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSC  287 (431)
Q Consensus       212 ~~~~~~~~~~~~~l~~G~~~~~~~~~~~~----~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~  287 (431)
                      +|.+++...++.++..|++++++++..+.    ...+++.++++++|++.++|+++..+++....  ..+++++|.+++|
T Consensus       264 ~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~--~~~~~slr~v~~g  341 (632)
T PRK07529        264 FHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVPVD--GHDISSLRYALCG  341 (632)
T ss_pred             hhhhHHHHHHHHHHHCCCEEEecCccccCcchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhCccc--CCCccceEEEEEc
Confidence            99999988899999999999997643332    35788999999999999999999999876543  2357899999999


Q ss_pred             cCCCcHHHHHHHHHHhCCceecccCcccccCcccCCCCCCCCCCCCCCccccc-cceEEEE--CCCC---CcCCCCceee
Q 014065          288 SASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAIL--DEIG---VPQEGGAKGE  361 (431)
Q Consensus       288 g~~~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~--d~~~---~~~~~~~~Ge  361 (431)
                      |+++++++.+++++.+++++++.||+||++.++..++.  +.....+++|+|+ ++.++++  |++|   ++++.|+.||
T Consensus       342 g~~l~~~l~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~--~~~~~~~svG~~~p~~~v~i~~~d~~g~~~~~~~~g~~Ge  419 (632)
T PRK07529        342 AAPLPVEVFRRFEAATGVRIVEGYGLTEATCVSSVNPP--DGERRIGSVGLRLPYQRVRVVILDDAGRYLRDCAVDEVGV  419 (632)
T ss_pred             CCCCCHHHHHHHHHHhCCcEeeeecccccCcccccCCc--cccccCCCcccccCCceEEEEEcCCCCcccccCCCCCceE
Confidence            99999999999999999999999999999877766542  2344678999999 6777774  6667   7899999999


Q ss_pred             EEEeCCccccccccCcchhhhcc-cCCceecCceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          362 VCIRGPNVTKGYKNNPEANKSAF-LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       362 l~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      |+++||+++.||++++. +...+ .+|||+|||+|++|+||++++.||.||+||.+|.+|+|.|||.+.
T Consensus       420 l~v~gp~v~~GY~~~~~-~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~i~p~eIE~~l  487 (632)
T PRK07529        420 LCIAGPNVFSGYLEAAH-NKGLWLEDGWLNTGDLGRIDADGYFWLTGRAKDLIIRGGHNIDPAAIEEAL  487 (632)
T ss_pred             EEEECCCccccccCCcc-ccccccCCCceEcCcEEEEcCCceEEEEecccCEEEeCCEEECHHHHHHHH
Confidence            99999999999998654 44444 679999999999999999999999999999999999999999864

>PLN02654 acetate-CoA ligase

Probab=100.00  E-value=1.7e-63  Score=495.95  Aligned_cols=421  Identities=22%  Similarity=0.307  Sum_probs=339.6

Q ss_pred             HHHHHHHHH-hcCCcceEEecC-----CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCc
Q 014065            7 IGLLNQVID-QFSSKRALSVSG-----KFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARA   80 (431)
Q Consensus         7 ~~~l~~~a~-~~p~~~a~~~~~-----~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~   80 (431)
                      .++|+++++ .+|+++|+++.+     .+++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|+
T Consensus        91 ~~~l~~~~~~~~~~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~pn~~e~v~a~lA~~~~Ga  170 (666)
T PLN02654         91 YNCLDRNVEAGNGDKIAIYWEGNEPGFDASLTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAMLACARIGA  170 (666)
T ss_pred             HHHHHHhhccCCCCCEEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCC
Confidence            567777775 489999998742     26899999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHHHHhcCCceEEEecCCchhH---------HHHHHHhcC---ccc-ccccccccc-----h-----
Q 014065           81 TAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAA---------AQAAASKLN---ISH-ATATLLDAD-----S-----  137 (431)
Q Consensus        81 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~---------~~~~~~~~~---~~~-~~~~~~~~~-----~-----  137 (431)
                      +++|+++.++.+++.++++.++++++|+++.....         +........   ... ..+......     .     
T Consensus       171 v~vpv~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (666)
T PLN02654        171 VHSVVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYENQLAMKREDTKWQE  250 (666)
T ss_pred             EEEecCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHHHHhccccCCCccEEEEeccccccccccccccc
Confidence            99999999999999999999999999998763221         111111100   000 000000000     0     


Q ss_pred             --hhhhhhccccccccccccCCCCCCCeEEEEeccCCCCCCCeeeechHHHHHH-HHHHHHHhcCCCCCeEEEecChhhH
Q 014065          138 --ELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAAS-VSNIKSVYKLTESDSTVIVLPLFHV  214 (431)
Q Consensus       138 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~-~~~~~~~~~~~~~~~~~~~~p~~~~  214 (431)
                        ...+..... .............+++++++|||||||.||+|+++|.+++.. .......++++++|++++..|++|.
T Consensus       251 ~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  329 (666)
T PLN02654        251 GRDVWWQDVVP-NYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAFDYKPTDVYWCTADCGWI  329 (666)
T ss_pred             CCcccHHHHhh-cCCCCCCceecCCCCceEEEecCCCCCCCceEEecccHHHHHHHHHHHHhcCCCCCcEEEEcCCchhh
Confidence              000000000 000011122246789999999999999999999999997643 4456667889999999999999999


Q ss_pred             HHHHHHHHHHHhcCCEEEeCCCC--CCChhhHHHHHHHhcceeeecchHHHHHHHhcccC-CCCCCCCCccEEEeccCCC
Q 014065          215 HGMLAGLLSSFAAGAAVTLPAAG--RFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVA-KPEPVYPKLRFIRSCSASL  291 (431)
Q Consensus       215 ~~~~~~~~~~l~~G~~~~~~~~~--~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~-~~~~~~~~l~~i~~~g~~~  291 (431)
                      ++....++.+|..|+++++.++.  .+++..+++.|+++++|+++.+|++++.+.+.... ....+++++|.++++|+++
T Consensus       330 ~g~~~~~~~~L~~G~tvvl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~Lr~i~~~Ge~l  409 (666)
T PLN02654        330 TGHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDEYVTRHSRKSLRVLGSVGEPI  409 (666)
T ss_pred             hhhHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCccccccCChhheeEEEEecCCC
Confidence            99888789999999999987642  24789999999999999999999999999876532 2234678999999999999


Q ss_pred             cHHHHHHHHHHhC---CceecccCcccccCcccCCCCCCCCCCCCCCccccc-cceEEEECCCCCcCCCCceeeEEEeC-
Q 014065          292 APVILSRLEEAFG---APVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRG-  366 (431)
Q Consensus       292 ~~~~~~~~~~~~~---~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d~~~~~~~~~~~Gel~v~~-  366 (431)
                      +++.++++.+.+|   +++.+.||+||+++....... ......++++|+|+ |++++|+|++|++++.++.|||++++ 
T Consensus       410 ~~~~~~~~~~~~g~~~~~i~~~yg~TE~g~~~~~~~~-~~~~~~~gs~G~p~~g~~v~i~d~~g~~~~~~~~Gel~v~~~  488 (666)
T PLN02654        410 NPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLP-GAWPQKPGSATFPFFGVQPVIVDEKGKEIEGECSGYLCVKKS  488 (666)
T ss_pred             CHHHHHHHHHHhCCCCCceeccccccccCCeeeccCC-CCCCCCCCccCCCCCCceEEEECCCCCCCCCCCceEEEEcCC
Confidence            9999999999997   789999999999876654432 12345678999999 89999999999999999999999999 


Q ss_pred             -CccccccccCcchhhhcc---cCCceecCceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          367 -PNVTKGYKNNPEANKSAF---LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       367 -~~~~~gy~~~~~~~~~~~---~~g~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                       |+++.||+++++.+...+   .+|||+|||+|++|+||+++++||.||+||++|++|+|.|||.+.
T Consensus       489 ~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGD~~~~d~dG~l~i~GR~dd~I~~~G~ri~p~EIE~~l  555 (666)
T PLN02654        489 WPGAFRTLYGDHERYETTYFKPFAGYYFSGDGCSRDKDGYYWLTGRVDDVINVSGHRIGTAEVESAL  555 (666)
T ss_pred             CchhhhhhcCChHHHHHhhhhcCCCEEEeCceEEECCCCcEEEeeeccCeEEeCCEEECHHHHHHHH
Confidence             789999999998877665   279999999999999999999999999999999999999999864

>PLN02387 long-chain-fatty-acid-CoA ligase family protein

Probab=100.00  E-value=1.6e-63  Score=497.61  Aligned_cols=422  Identities=27%  Similarity=0.357  Sum_probs=330.5

Q ss_pred             ccHHHHHHHHHHhcCCcceEEec-----------CC-----------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Q 014065            4 VTLIGLLNQVIDQFSSKRALSVS-----------GK-----------FDLTYSRIHELVERAASRLVAAGINAGDVVALT   61 (431)
Q Consensus         4 ~tl~~~l~~~a~~~p~~~a~~~~-----------~~-----------~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~   61 (431)
                      .|+.++|++.++.+||++|+.+.           ++           +.+||+|+.++++++|++|.+.|+++||+|+|+
T Consensus        58 ~t~~~l~~~~~~~~pd~~al~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~lG~~~gd~Vai~  137 (696)
T PLN02387         58 TTLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFERVCNFASGLVALGHNKEERVAIF  137 (696)
T ss_pred             CCHHHHHHHHHHHCCCCceEEEecccccccccccCCcccccccCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEE
Confidence            58999999999999999999431           22           238999999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCcccccccccccchh---
Q 014065           62 FPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSE---  138 (431)
Q Consensus        62 ~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  138 (431)
                      ++|+++|+++++||+++|++++|+++.++.+++.++++.++++++|++.+....+............++.+.+....   
T Consensus       138 ~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~li~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~  217 (696)
T PLN02387        138 ADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVICDSKQLKKLIDISSQLETVKRVIYMDDEGVDSDS  217 (696)
T ss_pred             cCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEEEECHHHHHHHHHHhhccCCceEEEEECCCCchhhh
Confidence            99999999999999999999999999999999999999999999999877665555544333221222222211100   


Q ss_pred             ----------hhhhhccccccccccccCCCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHh-cCCCCCeEEE
Q 014065          139 ----------LTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVY-KLTESDSTVI  207 (431)
Q Consensus       139 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~-~~~~~~~~~~  207 (431)
                                ..+..................++++++++|||||||.||||++||++++.++....... ++.++|++++
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~I~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~d~~l~  297 (696)
T PLN02387        218 SLSGSSNWTVSSFSEVEKLGKENPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGVMTVVPKLGKNDVYLA  297 (696)
T ss_pred             hhhccCCcEEEEHHHHHHhhccCCCCCCCCCccceEEEEecCCCCCCCCEEEEEcHHHHHHHHHHHhhcCCCCCCCEEEE
Confidence                      00010000000111112234679999999999999999999999999998887766553 5788999999


Q ss_pred             ecChhhHHHHHHHHHHHHhcCCEEEeCCCCCC-C-----hhhHHHHHHHhcceeeecchHHHHHHHhcccCCC-------
Q 014065          208 VLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRF-S-----ASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKP-------  274 (431)
Q Consensus       208 ~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~-~-----~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~-------  274 (431)
                      ++|++|.+++.. ....+..|+++.+...... +     +..++..+++++||++.++|++++.+.+......       
T Consensus       298 ~lPl~Hi~~~~~-~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~~~~i~~~~pT~~~~vP~~l~~l~~~~~~~~~~~~~~~  376 (696)
T PLN02387        298 YLPLAHILELAA-ESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKPTLMTAVPAILDRVRDGVRKKVDAKGGLA  376 (696)
T ss_pred             ECcHHHHHHHHH-HHHHHHhCCEEEECChhhhcccccccccCchhhHHHhCCcEEEehhHHHHHHHHHHHHHHhcccHHH
Confidence            999999999876 4556777887766442111 1     2345678999999999999999999875421100       


Q ss_pred             -------------------------C--------------CCCCCccEEEeccCCCcHHHHHHHHHHhCCceecccCccc
Q 014065          275 -------------------------E--------------PVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTE  315 (431)
Q Consensus       275 -------------------------~--------------~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~i~~~yg~tE  315 (431)
                                               .              ...+++|.+++||+++++++.+.+...+|+++++.||+||
T Consensus       377 ~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~i~~GGapl~~~~~~~~~~~~g~~v~~~YG~TE  456 (696)
T PLN02387        377 KKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGGRIRFMLSGGAPLSGDTQRFINICLGAPIGQGYGLTE  456 (696)
T ss_pred             HHHHHHHHHHHHHHhccCCcccccccchhhHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHHHcCCCeeEeechhh
Confidence                                     0              0015899999999999999998888778999999999999


Q ss_pred             ccCcccCCCCCCCCCCCCCCccccc-cceEEEEC-CCCC-cC--CCCceeeEEEeCCccccccccCcchhhhccc---CC
Q 014065          316 ATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILD-EIGV-PQ--EGGAKGEVCIRGPNVTKGYKNNPEANKSAFL---FG  387 (431)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d-~~~~-~~--~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~---~g  387 (431)
                      +++.++....   .....+++|+|+ +++++|+| +++. ..  ..++.|||+++||+++.||+++++.+++.|.   +|
T Consensus       457 t~~~~~~~~~---~~~~~gsvG~p~p~~evkivd~~~~~~~~~~~~~p~GEi~vrGp~v~~GY~~~pe~T~~~f~~d~~G  533 (696)
T PLN02387        457 TCAGATFSEW---DDTSVGRVGPPLPCCYVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTLGYFKNQEKTDEVYKVDERG  533 (696)
T ss_pred             cccceeecCc---ccCCCCccCCCCCceEEEEeeccccCcccCCCCCCCceEEeccCcccchhcCCHHHHhhhhccccCC
Confidence            9877665433   234568999999 89999998 5543 22  2345699999999999999999999999883   35


Q ss_pred             --ceecCceEEEcCCCeEEEecccccceec-CCeeccccceeccc
Q 014065          388 --WFHTGDIGYFDSDGYLHLVGRIKELINR-GGNLHESISLFLAK  429 (431)
Q Consensus       388 --~~~TGD~~~~~~~g~l~~~gR~~d~i~~-~G~~i~~~~iE~a~  429 (431)
                        ||+|||+|++|+||++++.||+||+||. +|++|+|.|||.+.
T Consensus       534 ~~W~~TGDig~~d~dG~l~i~gR~kd~ik~~~Ge~I~p~eIE~~l  578 (696)
T PLN02387        534 MRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAAL  578 (696)
T ss_pred             CceeecCceEEECCCCcEEEEEcccceEECCCCeEEchHHHHHHH
Confidence              9999999999999999999999999996 79999999999863

>PLN02860 o-succinylbenzoate-CoA ligase

Probab=100.00  E-value=9.6e-63  Score=484.13  Aligned_cols=418  Identities=25%  Similarity=0.303  Sum_probs=339.0

Q ss_pred             cccHHHHHHHHHHhcCCcceEEecCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcEE
Q 014065            3 GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATA   82 (431)
Q Consensus         3 ~~tl~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~   82 (431)
                      ..++.++|++.++++|+++|++.. ++++||+||.++++++|++|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus         6 ~~~~~~~~~~~~~~~p~~~a~~~~-~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~v~~~n~~~~~~~~la~~~~Gav~   84 (563)
T PLN02860          6 QAHICQCLTRLATLRGNAVVTISG-NRRRTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLEWLLAVACAGGIV   84 (563)
T ss_pred             hhHHHHHHHHHHHhcCCceEEecC-CceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHhhccEEE
Confidence            357999999999999999999864 4799999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHH-hcCcccccccccccchh--hhhhhccccc----c--cccc
Q 014065           83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAAS-KLNISHATATLLDADSE--LTLSLAHSES----D--TNAI  153 (431)
Q Consensus        83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~----~--~~~~  153 (431)
                      +|+++.++.+++.++++.+++++++++............ ........+...+....  ..+.......    .  ....
T Consensus        85 vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (563)
T PLN02860         85 APLNYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQNDRLPSLMWQVFLESPSSSVFIFLNSFLTTEMLKQRALGTTE  164 (563)
T ss_pred             EeCCcccCHHHHHHHHHhcCceEEEEecccchHHHHHhhccCCceeEEEEecCcccccccchhhccccchhccCcccccc
Confidence            999999999999999999999999998765333322211 11100001111110000  0000000000    0  0011


Q ss_pred             ccCCCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEe
Q 014065          154 SKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTL  233 (431)
Q Consensus       154 ~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~  233 (431)
                      ......++++++++|||||||.||+|.++|.++..+.......+++.++|+++..+|++|.+++.. ++.++..|+++++
T Consensus       165 ~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~v~  243 (563)
T PLN02860        165 LDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSS-ALAMLMVGACHVL  243 (563)
T ss_pred             ccCCCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCEEEEecCchhhccHHH-HHHHHHcCceEEe
Confidence            112335789999999999999999999999999887777677788999999999999999999876 8889999999999


Q ss_pred             CCCCCCChhhHHHHHHHhcceeeecchHHHHHHHhcccCC-CCCCCCCccEEEeccCCCcHHHHHHHHHHh-CCceeccc
Q 014065          234 PAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAK-PEPVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVLEAY  311 (431)
Q Consensus       234 ~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~-~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~-~~~i~~~y  311 (431)
                      .+  .+++..+++.++++++|++.++|+++..+++..... ....++++|.+++||+++++++.+.+.+.| ++++++.|
T Consensus       244 ~~--~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~~Y  321 (563)
T PLN02860        244 LP--KFDAKAALQAIKQHNVTSMITVPAMMADLISLTRKSMTWKVFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAY  321 (563)
T ss_pred             cC--CCCHHHHHHHHHHhCCeeEEeChHHHHHHHHhhhhhhccccccceeEEEeCCCcCCHHHHHHHHHhcCCCceecCC
Confidence            87  789999999999999999999999999998765322 123468999999999999999999999988 78999999


Q ss_pred             CcccccCcccCCCCCCC--------------------CCCCCCCccccc-cceEEEECCCCCcCCCCceeeEEEeCCccc
Q 014065          312 AMTEATHLMSSNPLPED--------------------GPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVT  370 (431)
Q Consensus       312 g~tE~~~~~~~~~~~~~--------------------~~~~~~~~G~~~-~~~~~i~d~~~~~~~~~~~Gel~v~~~~~~  370 (431)
                      |+||+++.+........                    ......++|+|+ ++++++++++     .|+.|||+++|+.++
T Consensus       322 G~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~~~~-----~g~~Gel~v~g~~~~  396 (563)
T PLN02860        322 GMTEACSSLTFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKIGLDE-----SSRVGRILTRGPHVM  396 (563)
T ss_pred             CccccCcccccccccccccccchhhhhhhcccccccccccCCcccCCccCCcEEEEecCC-----CCceeEEEEecCccc
Confidence            99999865543322110                    011223789999 8999999865     578899999999999


Q ss_pred             cccccCcchhhhcc-cCCceecCceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          371 KGYKNNPEANKSAF-LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       371 ~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      .||+++++.++..+ .+|||+|||+|++|+||++++.||.+|+||++|++|+|.|||.+.
T Consensus       397 ~GY~~~~~~t~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l  456 (563)
T PLN02860        397 LGYWGQNSETASVLSNDGWLDTGDIGWIDKAGNLWLIGRSNDRIKTGGENVYPEEVEAVL  456 (563)
T ss_pred             ccccCCccccchhccCCCeEEccceEEEcCCCCEEEeecccceeEECCEEccHHHHHHHH
Confidence            99999999888877 479999999999999999999999999999999999999999863

>TIGR02316 propion_prpE propionate--CoA ligase

Probab=100.00  E-value=1e-62  Score=489.07  Aligned_cols=423  Identities=21%  Similarity=0.275  Sum_probs=337.0

Q ss_pred             HHHHHHHHHhcCCcceEEec-----CCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcE
Q 014065            7 IGLLNQVIDQFSSKRALSVS-----GKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARAT   81 (431)
Q Consensus         7 ~~~l~~~a~~~p~~~a~~~~-----~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~   81 (431)
                      .++++++++.+|+++|+++.     +++++||+||.++++++|++|++.|+++||+|+++++|+++++++++||+++|++
T Consensus        55 ~~~l~~~~~~~p~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~n~~e~v~~~lA~~~~Gav  134 (628)
T TIGR02316        55 HNALDRHLDERGEQLALVTVSSETGQERTLTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLACARIGAI  134 (628)
T ss_pred             HHHHHHHhCcCCCCeEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCCE
Confidence            56788888889999999873     2368999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHHHHhcCCceEEEecCCch---------hHHHHHHHhcC-cccccccccccc--------hhhhhhh
Q 014065           82 AAPLNAAYTPDEFEFYLSDSESKLLLTPAEGN---------AAAQAAASKLN-ISHATATLLDAD--------SELTLSL  143 (431)
Q Consensus        82 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~~~~~~~~~-~~~~~~~~~~~~--------~~~~~~~  143 (431)
                      ++|+++.++.+++.++++.++++++|+++...         ....+...... ....++.+....        ....+..
T Consensus       135 ~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~  214 (628)
T TIGR02316       135 HSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHVLLVDRGLAPMRLIPGRDVDYAA  214 (628)
T ss_pred             EEecCCCCCHHHHHHHHHhcCceEEEECCccccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCcCcccCccccHHH
Confidence            99999999999999999999999999986421         11222211111 111111111100        0001110


Q ss_pred             ccccccccccccCCCCCCCeEEEEeccCCCCCCCeeeechHHHHHH-HHHHHHHhcCCCCCeEEEecChhhHHHHHHHHH
Q 014065          144 AHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAAS-VSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLL  222 (431)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  222 (431)
                      ..........+.....++++++++|||||||.||+|.++|.+++.+ .......++++++|++++..|++|..++...++
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~  294 (628)
T TIGR02316       215 LRTQHEDAQVPVEWLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIFGIRAGQVMFSASDVGWVVGHSYIVY  294 (628)
T ss_pred             HhhccccCCCCceecCCCCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCcEEEEcCCCCeeehhhHHHH
Confidence            0000000111112245789999999999999999999999997644 445566678899999999999999999877789


Q ss_pred             HHHhcCCEEEeCCCC--CCChhhHHHHHHHhcceeeecchHHHHHHHhcccC-CCCCCCCCccEEEeccCCCcHHHHHHH
Q 014065          223 SSFAAGAAVTLPAAG--RFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVA-KPEPVYPKLRFIRSCSASLAPVILSRL  299 (431)
Q Consensus       223 ~~l~~G~~~~~~~~~--~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~-~~~~~~~~l~~i~~~g~~~~~~~~~~~  299 (431)
                      .+|..|+++++.++.  .+++..+++.|+++++|+++.+|++++.+.+.... ....+++++|.+++||+++++++.+++
T Consensus       295 ~~L~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gGe~l~~~~~~~~  374 (628)
T TIGR02316       295 APLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAAWLRKHDLSSLHWLFLAGEPLDEPTAHWI  374 (628)
T ss_pred             HHHhccceEEEeCCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCCccceeEEEEecCCCCHHHHHHH
Confidence            999999999987632  34788999999999999999999999998775432 123458999999999999999999999


Q ss_pred             HHHhCCceecccCcccccCcccCCCCC-CCCCCCCCCccccc-cceEEEECC-CCCcCCCCceeeEEEeCC---cccccc
Q 014065          300 EEAFGAPVLEAYAMTEATHLMSSNPLP-EDGPHKPGSVGRPV-GQEIAILDE-IGVPQEGGAKGEVCIRGP---NVTKGY  373 (431)
Q Consensus       300 ~~~~~~~i~~~yg~tE~~~~~~~~~~~-~~~~~~~~~~G~~~-~~~~~i~d~-~~~~~~~~~~Gel~v~~~---~~~~gy  373 (431)
                      .+.++..+++.||+||++..++..... .......+++|+|+ |++++|+|+ +|++++.|+.|||+++||   +.+.||
T Consensus       375 ~~~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~~~~g~~Gel~v~gp~~~g~~~~~  454 (628)
T TIGR02316       375 TDGLGKPVIDNYWQTETGWPVLAIMPGLDLKPVKLGSPGLPMYGYHLRVLDEATGRPCGPNEKGVLTVVPPLPPGCLSTV  454 (628)
T ss_pred             HHHhCCCEEecccccccCceeecCCCCCCcCCCCCCCcccCcCCceEEEEECCCCCCCCCCCcEEEEEecCCCccccccc
Confidence            999999999999999998544333221 11234567899999 899999997 699999999999999998   567899


Q ss_pred             ccCcchhhhcc----cCCceecCceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          374 KNNPEANKSAF----LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       374 ~~~~~~~~~~~----~~g~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      +++++.+.+.+    .++||+|||+|++|+||+++++||.||+||++|.+|+|.|||.+.
T Consensus       455 ~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~dG~l~i~GR~dd~ik~~G~rv~~~eIE~~l  514 (628)
T TIGR02316       455 WGDDARFLKTYWSHFKRPLYSSFDWGIRDEDGYTFILGRTDDVINVAGHRLGTREIEESV  514 (628)
T ss_pred             cCChHHHHHhhhhcCCCCEEECCceEEEcCCCcEEEEEcCcceEEeCCEEeCHHHHHHHH
Confidence            99887766543    467999999999999999999999999999999999999999864

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed

Probab=100.00  E-value=4.6e-62  Score=478.23  Aligned_cols=421  Identities=26%  Similarity=0.396  Sum_probs=350.5

Q ss_pred             cccHHHHHHHHHHhcCCcceEEecC-----CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHH
Q 014065            3 GVTLIGLLNQVIDQFSSKRALSVSG-----KFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIR   77 (431)
Q Consensus         3 ~~tl~~~l~~~a~~~p~~~a~~~~~-----~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~   77 (431)
                      +.|+.+.|++.++.+|+++|+++.+     .+++||+||.++++++|++|.+.|+++||+|+++++|+++++++++||++
T Consensus        23 ~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~Val~~~n~~e~~~~~la~~~  102 (547)
T PRK13295         23 DRTINDDLDACVASCPDKTAVTAVRLGTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLACSR  102 (547)
T ss_pred             CCCHHHHHHHHHHHCCCceEEEecCCCccccceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHh
Confidence            4589999999999999999998754     26999999999999999999999999999999999999999999999999


Q ss_pred             hCcEEEecCCCCCHHHHHHHHhcCCceEEEecCCch-----hHHHHHHHhcCcccccccccccchhhhhhhc---c---c
Q 014065           78 ARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGN-----AAAQAAASKLNISHATATLLDADSELTLSLA---H---S  146 (431)
Q Consensus        78 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~  146 (431)
                      +|++++|++|.++.+++.++++.+++++++++++..     +...............+.... .....+...   .   .
T Consensus       103 ~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  181 (547)
T PRK13295        103 IGAVLNPLMPIFRERELSFMLKHAESKVLVVPKTFRGFDHAAMARRLRPELPALRHVVVVGG-DGADSFEALLITPAWEQ  181 (547)
T ss_pred             cCcEEeccccccCHHHHHHHHHhcCceEEEEeccccCcchHHHHHHHhhhCCCcceEEEecC-CCccCHHHHhhCCcccc
Confidence            999999999999999999999999999999987642     112222222111111111111 100001000   0   0


Q ss_pred             -cccccccccCCCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHH
Q 014065          147 -ESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSF  225 (431)
Q Consensus       147 -~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l  225 (431)
                       ..............+++++++|||||||.||+|.++|.+++..+......+++.+++++++.+|++|..++...++.++
T Consensus       182 ~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~~l  261 (547)
T PRK13295        182 EPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERLGLGADDVILMASPMAHQTGFMYGLMMPV  261 (547)
T ss_pred             ccccccccccCCCCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHHHHhCCCCCCeEEEecCchhhhhHHHHHHHHH
Confidence             0000111122345689999999999999999999999999988888888889999999999999999999888899999


Q ss_pred             hcCCEEEeCCCCCCChhhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHhCC
Q 014065          226 AAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGA  305 (431)
Q Consensus       226 ~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~  305 (431)
                      ..|+++++.+  .+++..+++.++++++|.+..+|+++..+....... ...++++|.+++||+++++++.+.+.+.+++
T Consensus       262 ~~G~~~~~~~--~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~-~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~  338 (547)
T PRK13295        262 MLGATAVLQD--IWDPARAAELIRTEGVTFTMASTPFLTDLTRAVKES-GRPVSSLRTFLCAGAPIPGALVERARAALGA  338 (547)
T ss_pred             HcCCeEEeCC--CCCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccc-CCCcccceEEEEecCCCCHHHHHHHHHHhCC
Confidence            9999999977  679999999999999999999999999998765433 3457899999999999999999999999999


Q ss_pred             ceecccCcccccCcccCCCCCCCCCCCCCCccccc-cceEEEECCCCCcCCCCceeeEEEeCCccccccccCcchhhhcc
Q 014065          306 PVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAF  384 (431)
Q Consensus       306 ~i~~~yg~tE~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~  384 (431)
                      ++++.||+||++.+.+.+.. ........++|+|+ +++++|+|+++++++.|+.|||+++|+.++.||+++++.++.. 
T Consensus       339 ~~~~~YG~TE~~~~~~~~~~-~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~-  416 (547)
T PRK13295        339 KIVSAWGMTENGAVTLTKLD-DPDERASTTDGCPLPGVEVRVVDADGAPLPAGQIGRLQVRGCSNFGGYLKRPQLNGTD-  416 (547)
T ss_pred             CeEEeccCCCCCCeeeccCC-CcchhccCccccccCCcEEEEECCCCCCCCCCCCCeEEEEcCcccccccCCccccccC-
Confidence            99999999999876554432 11223456889999 8999999999999999999999999999999999998887665 


Q ss_pred             cCCceecCceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          385 LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       385 ~~g~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      .+|||+|||+|+++++|++++.||.+|+||++|++|+|.+||.+.
T Consensus       417 ~~g~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~~IE~~l  461 (547)
T PRK13295        417 ADGWFDTGDLARIDADGYIRISGRSKDVIIRGGENIPVVEIEALL  461 (547)
T ss_pred             CCCCeecceEEEEcCCceEEEEeccCCeEEECCEEECHHHHHHHH
Confidence            679999999999999999999999999999999999999999863

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase

Probab=100.00  E-value=1.4e-62  Score=488.98  Aligned_cols=422  Identities=23%  Similarity=0.320  Sum_probs=340.4

Q ss_pred             HHHHHHHHHHhcCCcceEEecC-----CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCc
Q 014065            6 LIGLLNQVIDQFSSKRALSVSG-----KFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARA   80 (431)
Q Consensus         6 l~~~l~~~a~~~p~~~a~~~~~-----~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~   80 (431)
                      ..++|+++++.+|+++|+++.+     .+++||+||.++++++|++|++.|+++||+|+++++|+++++++++||+++|+
T Consensus        59 ~~~~l~~~~~~~p~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Ga  138 (625)
T TIGR02188        59 SYNCVDRHLEARPDKVAIIWEGDEPGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLACARIGA  138 (625)
T ss_pred             HHHHHHHhhccCCCCeEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCC
Confidence            4567778888899999998743     25899999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHHHHhcCCceEEEecCCch---------hHHHHHHHhcC-cccccccccccch--------hhhhh
Q 014065           81 TAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGN---------AAAQAAASKLN-ISHATATLLDADS--------ELTLS  142 (431)
Q Consensus        81 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~~~~~~~~~-~~~~~~~~~~~~~--------~~~~~  142 (431)
                      +++|+++.++.+++.++++.++++++|+++...         ....+...... .....+.......        ...+.
T Consensus       139 v~v~i~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (625)
T TIGR02188       139 IHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKAIVDEALEKCPVSVEHVLVVRRTGNPVPWVEGRDVWWH  218 (625)
T ss_pred             EEeccCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHHhCCCCccEEEEEcCCCCCcCccccccccHH
Confidence            999999999999999999999999999987532         22222222211 0011111100000        00001


Q ss_pred             hccccccccccccCCCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHH-HHHHHhcCCCCCeEEEecChhhHHHHHHHH
Q 014065          143 LAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVS-NIKSVYKLTESDSTVIVLPLFHVHGMLAGL  221 (431)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  221 (431)
                      .... ............++++++++|||||||.||+|+++|.+++.+.. .....+++.++|++++..|++|..+....+
T Consensus       219 ~~~~-~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~  297 (625)
T TIGR02188       219 DLMA-KASAYCEPEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYVFDIKDGDIFWCTADVGWITGHSYIV  297 (625)
T ss_pred             HHHh-hcCCCCCceecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHHHHHhccCCCCCcEEEECCCchhhhccHHHH
Confidence            0000 00111122345678999999999999999999999999765543 344556888999999999999999887778


Q ss_pred             HHHHhcCCEEEeCCCC--CCChhhHHHHHHHhcceeeecchHHHHHHHhcccCC-CCCCCCCccEEEeccCCCcHHHHHH
Q 014065          222 LSSFAAGAAVTLPAAG--RFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAK-PEPVYPKLRFIRSCSASLAPVILSR  298 (431)
Q Consensus       222 ~~~l~~G~~~~~~~~~--~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~-~~~~~~~l~~i~~~g~~~~~~~~~~  298 (431)
                      +.+|..|+++++.+..  .+++..+++.|+++++|++.++|++++.+.+..... ...+++++|.++++|++++++++++
T Consensus       298 ~~~l~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~  377 (625)
T TIGR02188       298 YGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDEWVKKHDLSSLRLLGSVGEPINPEAWMW  377 (625)
T ss_pred             HHHHHcCCeEEEECCCCCCCChhHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCCccceeEEEEecCCCCHHHHHH
Confidence            9999999999986532  347899999999999999999999999998765432 2345789999999999999999999


Q ss_pred             HHHHhC---CceecccCcccccCcccCCCCCCCCCCCCCCccccc-cceEEEECCCCCcCC-CCceeeEEEeC--Ccccc
Q 014065          299 LEEAFG---APVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQE-GGAKGEVCIRG--PNVTK  371 (431)
Q Consensus       299 ~~~~~~---~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d~~~~~~~-~~~~Gel~v~~--~~~~~  371 (431)
                      +.+.++   +++++.||+||+++.++..... .....++++|+|+ |++++|+|++|++++ .|+.|||++++  |+++.
T Consensus       378 ~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~~-~~~~~~~~~G~p~~g~~~~i~d~~g~~~~~~g~~GeL~v~~p~p~~~~  456 (625)
T TIGR02188       378 YYKVVGKERCPIVDTWWQTETGGIMITPLPG-ATPTKPGSATLPFFGIEPAVVDEEGNPVEGPGEGGYLVIKQPWPGMLR  456 (625)
T ss_pred             HHHHcCCCCCceEecccccccCCceeecCCC-CCCcCCCcccCCcCCceEEEECCCCCCCCCCCCeEEEEEccCCCcccc
Confidence            999885   7899999999998776544321 2245678899999 899999999999999 89999999999  68999


Q ss_pred             ccccCcchhhhcc---cCCceecCceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          372 GYKNNPEANKSAF---LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       372 gy~~~~~~~~~~~---~~g~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      ||+++++.+...+   .+|||+|||+|++|+||++++.||+||+||++|++|+|.|||.+.
T Consensus       457 gy~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~p~eIE~~l  517 (625)
T TIGR02188       457 TIYGDHERFVDTYFSPFPGYYFTGDGARRDKDGYIWITGRVDDVINVSGHRLGTAEIESAL  517 (625)
T ss_pred             cccCChHHHHHHHhccCCCEEECCceEEEcCCCcEEEEecccCEEEeCCEEECHHHHHHHH
Confidence            9999998776665   368999999999999999999999999999999999999999864

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.

>PRK13382 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=4e-62  Score=477.03  Aligned_cols=414  Identities=23%  Similarity=0.316  Sum_probs=342.8

Q ss_pred             ccHHHHHHHHHHhcCCcceEEecCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcEEE
Q 014065            4 VTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAA   83 (431)
Q Consensus         4 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v   83 (431)
                      .++.+.|.+.++++|+++|+++.+ +++||+||.++++++|++|.+.|+++||+|+++++|+++++++++||+++|++++
T Consensus        43 ~~~~~~l~~~a~~~p~~~a~~~~~-~~~Ty~el~~~~~~~A~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v  121 (537)
T PRK13382         43 MGPTSGFAIAAQRCPDRPGLIDEL-GTLTWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALLAANRIGADIL  121 (537)
T ss_pred             CCHHHHHHHHHHhCCCCeEEEeCC-CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCcHHHHHHHHHHHHcCcEEE
Confidence            578999999999999999999754 6999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCcccccccccccchhhhhhhccccccccccccCCCCCCCe
Q 014065           84 PLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDV  163 (431)
Q Consensus        84 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (431)
                      |+++.++.+++.++++.++++++|++.+....+...............+.+......+........ .  ......+++.
T Consensus       122 pl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~  198 (537)
T PRK13382        122 LLNTSFAGPALAEVVTREGVDTVIYDEEFSATVDRALADCPQATRIVAWTDEDHDLTVEVLIAAHA-G--QRPEPTGRKG  198 (537)
T ss_pred             ecCcccCHHHHHHHHHhcCCCEEEEchhhHHHHHHHHhhccccceEEEecCCcccccHHHHhhccC-c--CCCCCCCCCC
Confidence            999999999999999999999999998765544433221111111111111000001110000000 0  0112246788


Q ss_pred             EEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCCCCCCChhh
Q 014065          164 ALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSAST  243 (431)
Q Consensus       164 ~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~  243 (431)
                      ++++|||||||.||+|.++|.++..........+.+..+++++..+|++|.+++.. ++.++..|+++++..  .+++..
T Consensus       199 ~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-~~~~l~~g~~~~~~~--~~~~~~  275 (537)
T PRK13382        199 RVILLTSGTTGTPKGARRSGPGGIGTLKAILDRTPWRAEEPTVIVAPMFHAWGFSQ-LVLAASLACTIVTRR--RFDPEA  275 (537)
T ss_pred             eEEEECCCCCCCCCEEEeccchHHHHHHHHHHhhCCCCCCeEEEecChHhhhHHHH-HHHHHhcCcEEEECC--CcCHHH
Confidence            99999999999999999999988888777777888889999999999999999855 888899999999876  789999


Q ss_pred             HHHHHHHhcceeeecchHHHHHHHhcccC-CCCCCCCCccEEEeccCCCcHHHHHHHHHHhCCceecccCcccccCcccC
Q 014065          244 FWQDMIKYNATWYTAVPTIHQIVLDRHVA-KPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSS  322 (431)
Q Consensus       244 ~~~~i~~~~~t~~~~~p~~~~~l~~~~~~-~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~  322 (431)
                      +++.|+++++|++.++|++++.+++.... ....+++++|.+++||+++++++++.+.+.++..+++.||+||++.++..
T Consensus       276 ~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~  355 (537)
T PRK13382        276 TLDLIDRHRATGLAVVPVMFDRIMDLPAEVRNRYSGRSLRFAAASGSRMRPDVVIAFMDQFGDVIYNNYNATEAGMIATA  355 (537)
T ss_pred             HHHHHHHhCCEEEEehHHHHHHHHcCCchhcccCCccceeEEEEcCCCCCHHHHHHHHHHcCCcEEecccccccCcceec
Confidence            99999999999999999999999876432 11234578999999999999999999999999999999999999977665


Q ss_pred             CCCCCCCCCCCCCccccc-cceEEEECCCCCcCCCCceeeEEEeCCccccccccCcchhhhcccCCceecCceEEEcCCC
Q 014065          323 NPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDG  401 (431)
Q Consensus       323 ~~~~~~~~~~~~~~G~~~-~~~~~i~d~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g  401 (431)
                      ++.  .....++++|+|+ ++.++++|+++++++.|+.|||+++|++++.||+  ++.+. .+.+|||+|||+++++++|
T Consensus       356 ~~~--~~~~~~~~vG~p~~~~~~~i~d~~~~~~~~g~~GEl~v~g~~~~~gY~--~~~~~-~~~~g~~~TGDl~~~~~~g  430 (537)
T PRK13382        356 TPA--DLRAAPDTAGRPAEGTEIRILDQDFREVPTGEVGTIFVRNDTQFDGYT--SGSTK-DFHDGFMASGDVGYLDENG  430 (537)
T ss_pred             Chh--HhccCCCCccccCcCcEEEEECCCCCCCCCCCeeEEEEEcCCcccCcc--ccchh-hccCCCEeeCceEEEeCCC
Confidence            432  2234567999999 8999999999999999999999999999999998  33333 3568999999999999999


Q ss_pred             eEEEecccccceecCCeeccccceeccc
Q 014065          402 YLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       402 ~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      ++++.||.+|+||.+|++|+|.|||.+.
T Consensus       431 ~l~~~GR~dd~ik~~G~~v~~~eIE~~l  458 (537)
T PRK13382        431 RLFVVGRDDEMIVSGGENVYPIEVEKTL  458 (537)
T ss_pred             cEEEeccccceeEECCEEECHHHHHHHH
Confidence            9999999999999999999999999863

>PTZ00216 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.2e-62  Score=492.40  Aligned_cols=417  Identities=23%  Similarity=0.340  Sum_probs=328.1

Q ss_pred             cccHHHHHHHHHHhcCCcceEEec--------------------------CCCcccHHHHHHHHHHHHHHHHHcCCCCCC
Q 014065            3 GVTLIGLLNQVIDQFSSKRALSVS--------------------------GKFDLTYSRIHELVERAASRLVAAGINAGD   56 (431)
Q Consensus         3 ~~tl~~~l~~~a~~~p~~~a~~~~--------------------------~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd   56 (431)
                      ..|+.++|.++++++|+++|+.+.                          +++++||+||.++++++|++|+++|+++||
T Consensus        68 ~~t~~~~~~~~~~~~p~~~a~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lTy~el~~~~~~lA~~L~~~Gv~~gd  147 (700)
T PTZ00216         68 GPNFLQRLERICKERGDRRALAYRPVERVEKEVVKDADGKERTMEVTHFNETRYITYAELWERIVNFGRGLAELGLTKGS  147 (700)
T ss_pred             CCCHHHHHHHHHHhCCCCCeEEEeccccccccccccCCCccccccccccCCceEeEHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            358999999999999999999873                          246899999999999999999999999999


Q ss_pred             EEEEECCCcHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCcc-ccccccccc
Q 014065           57 VVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNIS-HATATLLDA  135 (431)
Q Consensus        57 ~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  135 (431)
                      +|+|+++|+++|+++++||+++|++++|+++.++.+++.++++++++++++++......+.......... ...+.+...
T Consensus       148 ~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~lv~~~~~~~~l~~~~~~~~~~~~~ii~~~~~  227 (700)
T PTZ00216        148 NVAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVCNGKNVPNLLRLMKSGGMPNTTIIYLDSL  227 (700)
T ss_pred             EEEEEcCCCHHHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhhhccCccEEEECHHHHHHHHHhhhhccCCceEEEEECCC
Confidence            9999999999999999999999999999999999999999999999999999876544433332221111 111111111


Q ss_pred             chh--------hhhhhcccc---ccccccccCCCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHh-----cC
Q 014065          136 DSE--------LTLSLAHSE---SDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVY-----KL  199 (431)
Q Consensus       136 ~~~--------~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~-----~~  199 (431)
                      ...        ..+......   ............++++++++|||||||.||||++||+++++++......+     .+
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~  307 (700)
T PTZ00216        228 PASVDTEGCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTAGILALEDRLNDLIGPP  307 (700)
T ss_pred             ccccccCCceEEEHHHHHHhCCccccccccCCCCCcccEEEEEEeCCCCCcCcEEEEEhHHHHHHHHHHHhhcccccCCC
Confidence            000        001100000   00111112334678999999999999999999999999998877655433     24


Q ss_pred             CCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCCCCCCChhhHHH-------HHHHhcceeeecchHHHHHHHhcccC
Q 014065          200 TESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQ-------DMIKYNATWYTAVPTIHQIVLDRHVA  272 (431)
Q Consensus       200 ~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~-------~i~~~~~t~~~~~p~~~~~l~~~~~~  272 (431)
                      .+++++++.+|++|.+++.. ....+..|+++++.     ++..+.+       .+++++||++..+|++++.+.+....
T Consensus       308 ~~~d~~ls~lPl~H~~~~~~-~~~~l~~G~~v~~~-----~~~~l~~~~~~~~~~l~~~~pT~~~~vP~~~~~l~~~~~~  381 (700)
T PTZ00216        308 EEDETYCSYLPLAHIMEFGV-TNIFLARGALIGFG-----SPRTLTDTFARPHGDLTEFRPVFLIGVPRIFDTIKKAVEA  381 (700)
T ss_pred             CCCCEEEEEChHHHHHHHHH-HHHHHHcCCEEEEC-----CHHHhhhhhccccchHHHcCCcEEEechHHHHHHHHHHHH
Confidence            67899999999999998766 55567888887763     2444443       68899999999999999987653210


Q ss_pred             C-------------------------C-C--------------CCCCCccEEEeccCCCcHHHHHHHHHHhCCceecccC
Q 014065          273 K-------------------------P-E--------------PVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYA  312 (431)
Q Consensus       273 ~-------------------------~-~--------------~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~i~~~yg  312 (431)
                      .                         . .              ...+++|.+++||+++++++.++++..++ ++++.||
T Consensus       382 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~lr~i~~GGa~l~~~~~~~~~~~~~-~l~~~YG  460 (700)
T PTZ00216        382 KLPPVGSLKRRVFDHAYQSRLRALKEGKDTPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVNVVFG-MVIQGWG  460 (700)
T ss_pred             HHhccCHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHHHHHHHhh-hHhhccC
Confidence            0                         0 0              00157999999999999999988887778 9999999


Q ss_pred             cccccCcccCCCCCCCCCCCCCCccccc-cceEEEECCCC--CcCCCCceeeEEEeCCccccccccCcchhhhcc-cCCc
Q 014065          313 MTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIG--VPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAF-LFGW  388 (431)
Q Consensus       313 ~tE~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d~~~--~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~  388 (431)
                      +||+++..+....   .....+++|+|+ +++++|+|+++  ...+.++.|||+++||+++.||+++++.+++.| .+||
T Consensus       461 ~TEt~~~~~~~~~---~~~~~~svG~p~~g~evkI~d~~~~~~~~~~~~~GEL~vrG~~v~~GY~~~pe~T~~~f~~dGw  537 (700)
T PTZ00216        461 LTETVCCGGIQRT---GDLEPNAVGQLLKGVEMKLLDTEEYKHTDTPEPRGEILLRGPFLFKGYYKQEELTREVLDEDGW  537 (700)
T ss_pred             cccccccccccCC---CCCCCCCcCCcCCCeEEEEeechhhccCCCCCCCceEEEcCCcccchhcCChhHhhhhccccCC
Confidence            9999876655432   234568999999 89999999764  234556679999999999999999999999998 4799


Q ss_pred             eecCceEEEcCCCeEEEeccccccee-cCCeeccccceeccc
Q 014065          389 FHTGDIGYFDSDGYLHLVGRIKELIN-RGGNLHESISLFLAK  429 (431)
Q Consensus       389 ~~TGD~~~~~~~g~l~~~gR~~d~i~-~~G~~i~~~~iE~a~  429 (431)
                      |+|||+|++|+||+++|.||.||+|| .+|++|+|.|||.+.
T Consensus       538 ~~TGDig~~d~dG~l~i~GR~kd~ik~~~G~~I~p~eIE~~l  579 (700)
T PTZ00216        538 FHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEALEALY  579 (700)
T ss_pred             eeccceEEEcCCCcEEEEEehHhheecCCCceeccHHHHHHH
Confidence            99999999999999999999999998 899999999999763

>PRK05852 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.6e-62  Score=477.11  Aligned_cols=425  Identities=38%  Similarity=0.596  Sum_probs=347.0

Q ss_pred             cccHHHHHHHHHHhcCCcceEEecCC-CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcE
Q 014065            3 GVTLIGLLNQVIDQFSSKRALSVSGK-FDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARAT   81 (431)
Q Consensus         3 ~~tl~~~l~~~a~~~p~~~a~~~~~~-~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~   81 (431)
                      ..|+.++|++.++++|+++|+++.++ +++||+||.++++++|++|.+.|+++||+|+++++|+++++++++||+++|++
T Consensus        15 ~~~l~~~l~~~a~~~p~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~   94 (534)
T PRK05852         15 GPRIADLVEVAATRLPEAPALVVTADRIAISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVVALLAASRADLV   94 (534)
T ss_pred             cccHHHHHHHHHHhCCCCcEEEecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHHHHHHHHcCcE
Confidence            35799999999999999999987553 58999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCcccccccccccc----hhhhhhhccccccccccccCC
Q 014065           82 AAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDAD----SELTLSLAHSESDTNAISKLT  157 (431)
Q Consensus        82 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~  157 (431)
                      ++|++|.++.+++.++++.++++.+|++............. .... ...+....    .....................
T Consensus        95 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (534)
T PRK05852         95 VVPLDPALPIAEQRVRSQAAGARVVLIDADGPHDRAEPTTR-WWPL-TVNVGGDSGPSGGTLSVHLDAATEPTPATSTPE  172 (534)
T ss_pred             EeecCCCCCcHHHHHHHHhCCCCEEEEcCCCcchhcccccc-ccce-eeeecccccccccccccccccccCCCccccccC
Confidence            99999999999999999999999999987533211110000 0000 00000000    000000000000000011112


Q ss_pred             CCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCCCC
Q 014065          158 NDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAG  237 (431)
Q Consensus       158 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~  237 (431)
                      ...++.++++|||||||.||+|.++|.++...+......+++..+|++++.+|++|.+++...++.++..|+++++++..
T Consensus       173 ~~~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~  252 (534)
T PRK05852        173 GLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGYRLSPRDATVAVMPLYHGHGLIAALLATLASGGAVLLPARG  252 (534)
T ss_pred             CCCCCceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCcceEEEecCcchhHHHHHHHHHHHhcCCeEEeCCCc
Confidence            23467899999999999999999999999998888888889999999999999999999998899999999999987755


Q ss_pred             CCChhhHHHHHHHhcceeeecchHHHHHHHhcccCC-CCCCCCCccEEEeccCCCcHHHHHHHHHHhCCceecccCcccc
Q 014065          238 RFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAK-PEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEA  316 (431)
Q Consensus       238 ~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~-~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~i~~~yg~tE~  316 (431)
                      .+++..+++.++++++|.++++|++++.+.+..... ...+.+++|.++++|+++++++.+.+.+.++.++++.||+||+
T Consensus       253 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~~~~~~~~~~~~~~~~~v~~~YG~tE~  332 (534)
T PRK05852        253 RFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATEPSGRKPAALRFIRSCSAPLTAETAQALQTEFAAPVVCAFGMTEA  332 (534)
T ss_pred             CcCHHHHHHHHHHcCCcEEEcChHHHHHHHhhcccccccccCCCeeEEEECCCCCCHHHHHHHHHHhCCChhhccCcccc
Confidence            678999999999999999999999999998865432 1234689999999999999999999999999999999999999


Q ss_pred             cCcccCCCCC-----CCCCCCCCCccccccceEEEECCCCCcCCCCceeeEEEeCCccccccccCcchhhhcccCCceec
Q 014065          317 THLMSSNPLP-----EDGPHKPGSVGRPVGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHT  391 (431)
Q Consensus       317 ~~~~~~~~~~-----~~~~~~~~~~G~~~~~~~~i~d~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~T  391 (431)
                      +..++.....     .+.....+..|++.+++++++|++|++++.|+.|||+++|+.+++||+++++.+.+.|.+|||+|
T Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~g~~g~~~g~~~~i~d~~g~~~~~g~~Gel~v~g~~v~~gY~~~~~~t~~~~~~g~~~T  412 (534)
T PRK05852        333 THQVTTTQIEGIGQTENPVVSTGLVGRSTGAQIRIVGSDGLPLPAGAVGEVWLRGTTVVRGYLGDPTITAANFTDGWLRT  412 (534)
T ss_pred             chhhhcCCccccccccCcccccccCCCCCCCeEEEECCCCCCCCCCCceEEEEecCcccchhcCCcccchhhhcCCCccc
Confidence            8766543321     01112334455544899999999999999999999999999999999999999998899999999


Q ss_pred             CceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          392 GDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       392 GD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      ||++++|+||++++.||.+|+||.+|.+|+|.+||.+.
T Consensus       413 GD~~~~d~dG~l~~~gR~~d~i~~~G~~v~~~~iE~~l  450 (534)
T PRK05852        413 GDLGSLSAAGDLSIRGRIKELINRGGEKISPERVEGVL  450 (534)
T ss_pred             CceEEEeCCCcEEEEecchhhEEECCEEECHHHHHHHH
Confidence            99999999999999999999999999999999999863

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.5e-61  Score=472.34  Aligned_cols=424  Identities=32%  Similarity=0.451  Sum_probs=359.5

Q ss_pred             CCcccHHHHHHHHHHhcCCcceEEecCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCc
Q 014065            1 MEGVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARA   80 (431)
Q Consensus         1 m~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~   80 (431)
                      |+..++.+.|++.++.+|+++|+.+.+ +++||+||++++.++|+.|.+.|+++||+|+++++|+++++++++||+++|+
T Consensus         2 ~~~~~i~~~l~~~~~~~~~~~a~~~~~-~~~Ty~~l~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~la~~~~G~   80 (513)
T PRK07656          2 NEWMTLPELLARAARRFGDKEAYVFGD-QRLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGA   80 (513)
T ss_pred             CccccHHHHHHHHHHHCCCCeEEEeCC-CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHhcCe
Confidence            566889999999999999999999755 7999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCcccccccccccchh------hhhhhccccccccccc
Q 014065           81 TAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSE------LTLSLAHSESDTNAIS  154 (431)
Q Consensus        81 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~  154 (431)
                      +++|+++..+.+++..+++.++++++++++...................+........      ..+..... .......
T Consensus        81 ~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  159 (513)
T PRK07656         81 VVVPLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSATTRLPALEHVVICETEEDDPHTEKMKTFTDFLA-AGDPAER  159 (513)
T ss_pred             EEEecCcccCHHHHHHHHhhcCceEEEEchhhHHHHHHHHhccCCccEEEEEcCcccccCccccccHHHHHh-cCCCCCC
Confidence            9999999999999999999999999999987665554433222211111111111000      00110000 0001112


Q ss_pred             cCCCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeC
Q 014065          155 KLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLP  234 (431)
Q Consensus       155 ~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~  234 (431)
                      .....++++++++|||||||.||+|.++|.++...+......+++.+++++++.+|++|.+++...++.++..|+++++.
T Consensus       160 ~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~  239 (513)
T PRK07656        160 APEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLGLTEGDRYLAANPFFHVFGYKAGVNAPLMRGATILPL  239 (513)
T ss_pred             cCCCCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhhCCCCCCeEEEccchHHHHHHHHHHHHHHHcCceEEec
Confidence            33456789999999999999999999999999988888888889999999999999999999988899999999999987


Q ss_pred             CCCCCChhhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHhCC-ceecccCc
Q 014065          235 AAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGA-PVLEAYAM  313 (431)
Q Consensus       235 ~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~-~i~~~yg~  313 (431)
                      +  .+++..+++.++++++|++.++|+++..+.+..... ...++++|.+++||+++++++.+.+.+.++. .+++.||+
T Consensus       240 ~--~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~-~~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~YG~  316 (513)
T PRK07656        240 P--VFDPDEVFRLIETERITVLPGPPTMYNSLLQHPDRS-AEDLSSLRLAVTGAASMPVALLERFESELGVDIVLTGYGL  316 (513)
T ss_pred             C--cCCHHHHHHHHHHhCCeEEechHHHHHHHHcCCCcC-CCCccceeeEEecCCCCCHHHHHHHHHHcCCCceEeEEcc
Confidence            6  678999999999999999999999999998876543 3357899999999999999999999999988 89999999


Q ss_pred             ccccCcccCCCCCCCCCCCCCCccccc-cceEEEECCCCCcCCCCceeeEEEeCCccccccccCcchhhhccc-CCceec
Q 014065          314 TEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFL-FGWFHT  391 (431)
Q Consensus       314 tE~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~g~~~T  391 (431)
                      ||++++...+.........++++|+|+ +.+++|+|+++++++.|+.|||+++++.++.||++++..+...+. +|||+|
T Consensus       317 tE~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~t  396 (513)
T PRK07656        317 SEASGVTTFNRLDDDRKTVAGTIGTAIAGVENKIVNELGEEVPVGEVGELLVRGPNVMKGYYDDPEATAAAIDADGWLHT  396 (513)
T ss_pred             ccCCCceeecCccccccccCCCccccCCCcEEEEECCCCCCCCCCCceEEEEEcchhhhhhcCCHHHHhhhhccCCceec
Confidence            999887776654222223367899999 899999999999999999999999999999999999888877776 799999


Q ss_pred             CceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          392 GDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       392 GD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      ||+|+++++|.+++.||.+|+||++|.+++|.+||.+.
T Consensus       397 GDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l  434 (513)
T PRK07656        397 GDLGRLDEEGYLYIVDRKKDMFIVGGFNVYPAEVEEVL  434 (513)
T ss_pred             cceEEEcCCeeEEEEecccceEEeCCEEeCHHHHHHHH
Confidence            99999999999999999999999999999999999863

>PRK00174 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=8e-62  Score=484.16  Aligned_cols=421  Identities=24%  Similarity=0.340  Sum_probs=338.8

Q ss_pred             HHHHHHHHHhcCCcceEEecC-----CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcE
Q 014065            7 IGLLNQVIDQFSSKRALSVSG-----KFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARAT   81 (431)
Q Consensus         7 ~~~l~~~a~~~p~~~a~~~~~-----~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~   81 (431)
                      .++|+++++++|+++|+++.+     .+++||+||+++++++|++|++.|+++||+|+++++|+++++++++||+++|++
T Consensus        70 ~~~l~~~~~~~p~~~Al~~~~~~~~~~~~lTy~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav  149 (637)
T PRK00174         70 YNCLDRHLKTRGDKVAIIWEGDDPGDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLACARIGAV  149 (637)
T ss_pred             HHHHHHhhccCCCCeEEEEECCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCE
Confidence            467888888999999999743     247999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHHHHhcCCceEEEecCCch---------hHHHHHHHhcCcccccccccccc--------hhhhhhhc
Q 014065           82 AAPLNAAYTPDEFEFYLSDSESKLLLTPAEGN---------AAAQAAASKLNISHATATLLDAD--------SELTLSLA  144 (431)
Q Consensus        82 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~  144 (431)
                      ++|++|.++.+++.++++.++++++|+++...         +.+.+...........+......        ....+...
T Consensus       150 ~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (637)
T PRK00174        150 HSVVFGGFSAEALADRIIDAGAKLVITADEGVRGGKPIPLKANVDEALANCPSVEKVIVVRRTGGDVDWVEGRDLWWHEL  229 (637)
T ss_pred             EEecCCCCCHHHHHHHHHhcCCcEEEEcCccccCCcccchHHHHHHHHHhCCCccEEEEEcCCCCCcCcCCCCcccHHHH
Confidence            99999999999999999999999999987532         12222222111111111111000        00001100


Q ss_pred             cccccccccccCCCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHH-HHHHHhcCCCCCeEEEecChhhHHHHHHHHHH
Q 014065          145 HSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVS-NIKSVYKLTESDSTVIVLPLFHVHGMLAGLLS  223 (431)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  223 (431)
                      .. ............++++++++|||||||.||+|.++|.+++.+.. .....+++.++|++++..|++|..++...++.
T Consensus       230 ~~-~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  308 (637)
T PRK00174        230 VA-GASDECEPEPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVFDYKDGDVYWCTADVGWVTGHSYIVYG  308 (637)
T ss_pred             Hh-hcCCCCCccccCCCCcEEEEECCCCCCCCceEEeCcchhHHHHHHHHHhccCCCCCcEEEEcCCchHhhhhHHHHHH
Confidence            00 00111112234578999999999999999999999999875544 34445688889999999999999998777899


Q ss_pred             HHhcCCEEEeCCCC--CCChhhHHHHHHHhcceeeecchHHHHHHHhcccCC-CCCCCCCccEEEeccCCCcHHHHHHHH
Q 014065          224 SFAAGAAVTLPAAG--RFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAK-PEPVYPKLRFIRSCSASLAPVILSRLE  300 (431)
Q Consensus       224 ~l~~G~~~~~~~~~--~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~-~~~~~~~l~~i~~~g~~~~~~~~~~~~  300 (431)
                      +|..|+++++.+..  .+++..+++.|+++++|++..+|++++.+++..... ...+++++|.++++|+++++++++++.
T Consensus       309 ~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~Ge~l~~~~~~~~~  388 (637)
T PRK00174        309 PLANGATTLMFEGVPNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGDEHPKKYDLSSLRLLGSVGEPINPEAWEWYY  388 (637)
T ss_pred             HHHcCCEEEEECCCCCCCChHHHHHHHHhcCCeEEeecHHHHHHHHhcCCcccccCCccceeEEEEeCCCCCHHHHHHHH
Confidence            99999999986532  347899999999999999999999999998765332 234578999999999999999999999


Q ss_pred             HHhC---CceecccCcccccCcccCCCCCCCCCCCCCCccccc-cceEEEECCCCCcCCCCceeeEEEeC--Cccccccc
Q 014065          301 EAFG---APVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRG--PNVTKGYK  374 (431)
Q Consensus       301 ~~~~---~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d~~~~~~~~~~~Gel~v~~--~~~~~gy~  374 (431)
                      +.++   +++++.||+||++..+..... ......++++|+|+ |++++|+|++|++++.|+.|||+++|  |+++.||+
T Consensus       389 ~~~~~~~~~i~~~YG~TE~~~~~~~~~~-~~~~~~~~~vG~p~~g~~~~i~d~~g~~~~~g~~Gel~v~g~~p~~~~gy~  467 (637)
T PRK00174        389 KVVGGERCPIVDTWWQTETGGIMITPLP-GATPLKPGSATRPLPGIQPAVVDEEGNPLEGGEGGNLVIKDPWPGMMRTIY  467 (637)
T ss_pred             HHhCCCCCceEecccccccCCceEecCC-CCCCcCCCcccCCCCCceEEEECCCCCCCCCCCcEEEEEcCCCCccccccc
Confidence            8885   789999999999876654322 11234567899999 89999999999999999999999999  68999999


Q ss_pred             cCcchhhhcc---cCCceecCceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          375 NNPEANKSAF---LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       375 ~~~~~~~~~~---~~g~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      ++++.+.+.+   .+|||+|||+|++|+||++++.||.||+||++|++|+|.|||.+.
T Consensus       468 ~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l  525 (637)
T PRK00174        468 GDHERFVKTYFSTFKGMYFTGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESAL  525 (637)
T ss_pred             CCHHHHHHhhhcCCCCEEECCceEEEcCCCcEEEEEecccEEEeCCEEECHHHHHHHH
Confidence            9998777665   368999999999999999999999999999999999999999863

>PRK09274 peptide synthase; Provisional

Probab=100.00  E-value=8.2e-62  Score=477.44  Aligned_cols=419  Identities=23%  Similarity=0.341  Sum_probs=332.7

Q ss_pred             CCcccHHHHHHHHHHhcCCcceEEecCC---------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHH
Q 014065            1 MEGVTLIGLLNQVIDQFSSKRALSVSGK---------FDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIM   71 (431)
Q Consensus         1 m~~~tl~~~l~~~a~~~p~~~a~~~~~~---------~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~   71 (431)
                      |...|+.+.|.+.++++|+++|+++.++         +++||+||.++++++|++|.+.|+++||+|+++++|+++++++
T Consensus         3 ~~~~~~~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~g~~~gd~V~~~~~n~~~~~~~   82 (552)
T PRK09274          3 ASMANIARHLPRAAQERPDQLAVAVPGGRGADGKLAYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEFFAL   82 (552)
T ss_pred             hhhhhHHHHHHHHHHhCCCcceEEeccCCCCccccccCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCcHHHHHH
Confidence            4567899999999999999999987543         2899999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCcEEEecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhc-Cccccccccccc--chhhhhhhccccc
Q 014065           72 FLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKL-NISHATATLLDA--DSELTLSLAHSES  148 (431)
Q Consensus        72 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~  148 (431)
                      ++||+++|++++|++|.++.+++.++++.++++++|+++... ......... ......+.....  .....+.......
T Consensus        83 ~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  161 (552)
T PRK09274         83 TFALFKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFIGIPKAH-LARRLFGWGKPSVRRLVTVGGRLLWGGTTLATLLRDG  161 (552)
T ss_pred             HHHHHHcCeEEEEcCCCccHHHHHHHHHhcCCCEEEeccHHH-HHHHHhccCccchhheeccccccccCCccHHHhcccC
Confidence            999999999999999999999999999999999999875311 111111000 000001101000  0000111110000


Q ss_pred             cccccccCCCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcC
Q 014065          149 DTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAG  228 (431)
Q Consensus       149 ~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G  228 (431)
                      ...........++++++++|||||||.||+|.++|.++...+......+++.++++.+..+|++|.+++        ..|
T Consensus       162 ~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~--------~~g  233 (552)
T PRK09274        162 AAAPFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDYGIEPGEIDLPTFPLFALFGP--------ALG  233 (552)
T ss_pred             ccccCCCCCCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHHHHHHHhCCCCCceeeeccCHHHhhhh--------hhC
Confidence            111112233456899999999999999999999999999988888888899999999999998876443        347


Q ss_pred             CEEEeCCC-----CCCChhhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHh
Q 014065          229 AAVTLPAA-----GRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF  303 (431)
Q Consensus       229 ~~~~~~~~-----~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~  303 (431)
                      .++++++.     ..+++..+++.|+++++|+++++|++++.+.+..... ..+++++|.+++||+++++++.+++.+.+
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~-~~~~~~lr~~~~gG~~~~~~~~~~~~~~~  312 (552)
T PRK09274        234 MTSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGEAN-GIKLPSLRRVISAGAPVPIAVIERFRAML  312 (552)
T ss_pred             CeEEecCcccccccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHhhhc-CCCCchhhEEEecCCcCCHHHHHHHHHHc
Confidence            77777542     1457899999999999999999999999998865432 34578999999999999999999999999


Q ss_pred             --CCceecccCcccccCcccCCCCC------CC-CCCCCCCccccc-cceEEEECC---------CCCcCCCCceeeEEE
Q 014065          304 --GAPVLEAYAMTEATHLMSSNPLP------ED-GPHKPGSVGRPV-GQEIAILDE---------IGVPQEGGAKGEVCI  364 (431)
Q Consensus       304 --~~~i~~~yg~tE~~~~~~~~~~~------~~-~~~~~~~~G~~~-~~~~~i~d~---------~~~~~~~~~~Gel~v  364 (431)
                        ++++++.||+||+++++......      .. ......++|+|+ +++++|+|+         ++++++.|+.|||++
T Consensus       313 ~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~ivd~~~~~~~~~~~~~~~~~g~~Gel~v  392 (552)
T PRK09274        313 PPDAEILTPYGATEALPISSIESREILFATRAATDNGAGICVGRPVDGVEVRIIAISDAPIPEWDDALRLATGEIGEIVV  392 (552)
T ss_pred             CCCceEEccccccccceeEeecchhhhccccccccCCCCcccCccCCCceEEEEeccccccccccccccCCCCCeeEEEE
Confidence              47999999999998765543211      00 111234789999 899999984         467899999999999


Q ss_pred             eCCccccccccCcchhhhccc---CC--ceecCceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          365 RGPNVTKGYKNNPEANKSAFL---FG--WFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       365 ~~~~~~~gy~~~~~~~~~~~~---~g--~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      +|++++.||+++++.+...+.   +|  ||+|||+|++|+||++++.||.+|+||++|++|+|.|||.+.
T Consensus       393 ~g~~~~~GY~~~~~~t~~~~~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l  462 (552)
T PRK09274        393 AGPMVTRSYYNRPEATRLAKIPDGQGDVWHRMGDLGYLDAQGRLWFCGRKAHRVETAGGTLYTIPCERIF  462 (552)
T ss_pred             ecCcccccccCChHHhhhhhcccCCCCcEEEcCCEEEEccCCcEEEEeccCCeEEECCEEECcHHHHHHH
Confidence            999999999999988877652   46  999999999999999999999999999999999999999763

>PRK04319 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.3e-61  Score=477.19  Aligned_cols=418  Identities=26%  Similarity=0.372  Sum_probs=345.6

Q ss_pred             HHHHHHHHHH-hcCCcceEEecC---CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcE
Q 014065            6 LIGLLNQVID-QFSSKRALSVSG---KFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARAT   81 (431)
Q Consensus         6 l~~~l~~~a~-~~p~~~a~~~~~---~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~   81 (431)
                      ..++++++++ .+|+++|+++.+   .+++||+||.++++++|++|.+.|+++||+|+++++|+++++++++||+++|++
T Consensus        45 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~G~v  124 (570)
T PRK04319         45 AYEAIDRHADGGRKDKVALRYLDASRKEKYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFALLGALKNGAI  124 (570)
T ss_pred             HHHHHHHhhccCCCCceEEEEECCCCceeecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCcE
Confidence            3467888776 479999998753   368999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCcccccccccccc----hhhhhhhccccccccccccCC
Q 014065           82 AAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDAD----SELTLSLAHSESDTNAISKLT  157 (431)
Q Consensus        82 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~  157 (431)
                      ++|+++.++.+++.++++.++++.++++.........  .........+...+..    ....+..... ..........
T Consensus       125 ~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  201 (570)
T PRK04319        125 VGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKPA--DDLPSLKHVLLVGEDVEEGPGTLDFNALME-QASDEFDIEW  201 (570)
T ss_pred             EcccccccCHHHHHHHHHccCCcEEEEChhhhhccch--hcCCCceEEEEECCCcCCCcCccCHHHHHh-hcCCcCCccc
Confidence            9999999999999999999999999998764332211  0111101111111110    0001111000 0011111223


Q ss_pred             CCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCCCC
Q 014065          158 NDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAG  237 (431)
Q Consensus       158 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~  237 (431)
                      ..++++++++|||||||.||+|.++|.++..++......+++.+++++++..|++|.+++...++.++..|+++++... 
T Consensus       202 ~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~~~v~~~~-  280 (570)
T PRK04319        202 TDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVLDLHEDDVYWCTADPGWVTGTSYGIFAPWLNGATNVIDGG-  280 (570)
T ss_pred             cCCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhcCCCCCceEEecCChHHhhCchHHHHHHHhcCceEEEECC-
Confidence            4568899999999999999999999999998888777888899999999999999999988889999999999988653 


Q ss_pred             CCChhhHHHHHHHhcceeeecchHHHHHHHhcccC-CCCCCCCCccEEEeccCCCcHHHHHHHHHHhCCceecccCcccc
Q 014065          238 RFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVA-KPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEA  316 (431)
Q Consensus       238 ~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~-~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~i~~~yg~tE~  316 (431)
                      .+++..+++.|+++++|+++++|++++.+.+.... ....+++++|.++++|+++++++.+++.+.++.++++.||+||+
T Consensus       281 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~i~~~YG~tE~  360 (570)
T PRK04319        281 RFSPERWYRILEDYKVTVWYTAPTAIRMLMGAGDDLVKKYDLSSLRHILSVGEPLNPEVVRWGMKVFGLPIHDNWWMTET  360 (570)
T ss_pred             CCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcCCcccccCCcccceEEEEcccCCCHHHHHHHHHHhCCCeEeceeeccc
Confidence            67999999999999999999999999999876432 12345789999999999999999999999999999999999999


Q ss_pred             cCcccCCCCCCCCCCCCCCccccc-cceEEEECCCCCcCCCCceeeEEEeC--CccccccccCcchhhhcccCCceecCc
Q 014065          317 THLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRG--PNVTKGYKNNPEANKSAFLFGWFHTGD  393 (431)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d~~~~~~~~~~~Gel~v~~--~~~~~gy~~~~~~~~~~~~~g~~~TGD  393 (431)
                      +..+......  ....++++|+|+ +++++|+|+++.+++.|+.|||++++  ++++.||+++++.+.+.|.+|||+|||
T Consensus       361 ~~~~~~~~~~--~~~~~~~~G~p~~g~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~~~GY~~~~~~~~~~~~~gw~~TGD  438 (570)
T PRK04319        361 GGIMIANYPA--MDIKPGSMGKPLPGIEAAIVDDQGNELPPNRMGNLAIKKGWPSMMRGIWNNPEKYESYFAGDWYVSGD  438 (570)
T ss_pred             CCEEEecCCC--CCCCCCcCcCCCCCCEEEEECCCCCCCCCCCceEEEEcCCCChHHhHhcCCHHHhhhhhcCCceEeCc
Confidence            8765543221  234568999999 89999999999999999999999997  899999999999999989899999999


Q ss_pred             eEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          394 IGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       394 ~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      +++++++|++++.||.+|+||.+|++|+|.|||.+.
T Consensus       439 l~~~~~~g~l~~~GR~~d~i~~~G~~i~p~eIE~~l  474 (570)
T PRK04319        439 SAYMDEDGYFWFQGRVDDVIKTSGERVGPFEVESKL  474 (570)
T ss_pred             EEEECCCeeEEEEecCCCEEEECCEEECHHHHHHHH
Confidence            999999999999999999999999999999999863

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=5e-61  Score=472.18  Aligned_cols=420  Identities=25%  Similarity=0.393  Sum_probs=342.6

Q ss_pred             ccHHHHHHHHHHhcCCcceEEecCCCcccHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCcHHHHHHHHHHHHhCcEE
Q 014065            4 VTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVA-AGINAGDVVALTFPNTVEFVIMFLAVIRARATA   82 (431)
Q Consensus         4 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~-~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~   82 (431)
                      .|+.+.|++.++.+|+++|++..+ +++||+||+++++++|+.|.+ .|+++||+|+++++|++++++++|||+++|+++
T Consensus        24 ~~~~~~l~~~a~~~p~~~al~~~~-~~~Ty~el~~~~~~la~~L~~~~gi~~gd~Vai~~~n~~~~~~~~la~~~~Ga~~  102 (562)
T PRK05677         24 PNIQAVLKQSCQRFADKPAFSNLG-KTLTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPVAVFGAMRAGLIV  102 (562)
T ss_pred             CcHHHHHHHHHHhCCCCeeEEECC-ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEE
Confidence            589999999999999999998654 799999999999999999997 599999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCccccccc-ccccch---h--------------------
Q 014065           83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATAT-LLDADS---E--------------------  138 (431)
Q Consensus        83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~--------------------  138 (431)
                      +|++|..+.+++.++++.++++++|++.+......+............. ..+...   .                    
T Consensus       103 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (562)
T PRK05677        103 VNTNPLYTAREMEHQFNDSGAKALVCLANMAHLAEKVLPKTGVKHVIVTEVADMLPPLKRLLINAVVKHVKKMVPAYHLP  182 (562)
T ss_pred             eecCCCCCHHHHHHHHhccCceEEEEecchhhhHHHhhhccCcceeEEecccccccchhhhhcccchhhccccccccCCc
Confidence            9999999999999999999999999987765544443322211111100 000000   0                    


Q ss_pred             --hhhhhccccccccccccCCCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhc--CC-CCCeEEEecChhh
Q 014065          139 --LTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYK--LT-ESDSTVIVLPLFH  213 (431)
Q Consensus       139 --~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~--~~-~~~~~~~~~p~~~  213 (431)
                        ..+..................++++++++|||||||.||+|.++|.++..++......+.  .. ..+.+++.+|++|
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~h  262 (562)
T PRK05677        183 QAVKFNDALAKGAGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLNEGCEILIAPLPLYH  262 (562)
T ss_pred             ccccHHHHHhcCCCCCCCCCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHHHHHHhccCCCCCccEEEEcCcHHH
Confidence              000000000000011122345689999999999999999999999999877665554443  33 3468899999999


Q ss_pred             HHHHHHHHHHHHhcCCEEEeCCCCCCChhhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcH
Q 014065          214 VHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAP  293 (431)
Q Consensus       214 ~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~  293 (431)
                      .+++...++..+..|.+.++.+. .+++..+++.|+++++|+++++|+++..+++..... ..+++++|.+++||+++++
T Consensus       263 ~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~-~~~~~~lr~v~~gG~~~~~  340 (562)
T PRK05677        263 IYAFTFHCMAMMLIGNHNILISN-PRDLPAMVKELGKWKFSGFVGLNTLFVALCNNEAFR-KLDFSALKLTLSGGMALQL  340 (562)
T ss_pred             HHHHHHHHHHHHHcCCeEEEecC-cccHHHHHHHHHHcCceEEecHHHHHHHHHhCcccc-cCChhhceEEEEcCccCCH
Confidence            99988778888888888776553 468899999999999999999999999987754322 2346799999999999999


Q ss_pred             HHHHHHHHHhCCceecccCcccccCcccCCCCCCCCCCCCCCccccc-cceEEEECCCCCcCCCCceeeEEEeCCccccc
Q 014065          294 VILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKG  372 (431)
Q Consensus       294 ~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d~~~~~~~~~~~Gel~v~~~~~~~g  372 (431)
                      ++.+.+.+.+++++++.||+||+++++.....   ....++++|+|+ +.+++++|+++++++.|+.|||+++|+.++.|
T Consensus       341 ~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~---~~~~~~~vG~~~~~~~v~i~d~~~~~~~~g~~Gel~v~g~~~~~g  417 (562)
T PRK05677        341 ATAERWKEVTGCAICEGYGMTETSPVVSVNPS---QAIQVGTIGIPVPSTLCKVIDDDGNELPLGEVGELCVKGPQVMKG  417 (562)
T ss_pred             HHHHHHHHHcCCCeeccCCccccCcceeecCc---cCCCCCccCccCCCCEEEEECCCCCCCCCCCCeEEEEecCccchh
Confidence            99999999899999999999999877665442   234567899999 89999999999999999999999999999999


Q ss_pred             cccCcchhhhccc-CCceecCceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          373 YKNNPEANKSAFL-FGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       373 y~~~~~~~~~~~~-~g~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      |+++++.+++.|. +|||+|||+|++|++|++++.||.+|+||++|.+|+|.|||.+.
T Consensus       418 Y~~~~~~t~~~~~~~g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~i~p~eiE~~l  475 (562)
T PRK05677        418 YWQRPEATDEILDSDGWLKTGDIALIQEDGYMRIVDRKKDMILVSGFNVYPNELEDVL  475 (562)
T ss_pred             hcCCchhhhhccCCCCcccccceEEECCCCcEEEEecCcCeEEeCCEEECHHHHHHHH
Confidence            9999999988885 79999999999999999999999999999999999999999863

>PLN02246 4-coumarate--CoA ligase

Probab=100.00  E-value=6.8e-61  Score=469.13  Aligned_cols=422  Identities=31%  Similarity=0.432  Sum_probs=349.6

Q ss_pred             CcccHHHHHHHHHHhcCCcceEEecC-CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCc
Q 014065            2 EGVTLIGLLNQVIDQFSSKRALSVSG-KFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARA   80 (431)
Q Consensus         2 ~~~tl~~~l~~~a~~~p~~~a~~~~~-~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~   80 (431)
                      +..|+.+++.++++++|+++|+++.+ ++++||.||.++++++|++|.+.|+++||+|+++++|+++++++++||+++|+
T Consensus        21 ~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~la~~~~G~  100 (537)
T PLN02246         21 NHLPLHDYCFERLSEFSDRPCLIDGATGRVYTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGA  100 (537)
T ss_pred             CCCcHHHHHHHHHHhCCCCeEEEecCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHHcCE
Confidence            45689999999999999999998643 47899999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCcccccccccccc-hhhhhhhccccccccccccCCCC
Q 014065           81 TAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDAD-SELTLSLAHSESDTNAISKLTND  159 (431)
Q Consensus        81 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  159 (431)
                      +++|++|..+.+++..+++.++++++|++....+.+.........  ..+.+.... ....+....... ....+.....
T Consensus       101 ~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  177 (537)
T PLN02246        101 VTTTANPFYTPAEIAKQAKASGAKLIITQSCYVDKLKGLAEDDGV--TVVTIDDPPEGCLHFSELTQAD-ENELPEVEIS  177 (537)
T ss_pred             EEecCCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHHhhcCCc--eEEEeCCCCCCceeHHHHhcCC-CCCCCCCCCC
Confidence            999999999999999999999999999998766655444321111  111111100 000011000000 0111223345


Q ss_pred             CCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHH----HhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCC
Q 014065          160 PSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKS----VYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPA  235 (431)
Q Consensus       160 ~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~----~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~  235 (431)
                      ++++++++|||||||.||+|.++|.++.........    .+++.++++++..+|++|.+++...++.++..|+++++.+
T Consensus       178 ~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~  257 (537)
T PLN02246        178 PDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYSLNSVLLCGLRVGAAILIMP  257 (537)
T ss_pred             ccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhccccccCCCCCcEEEEeechHHHHHHHHHHHHHHhcCCEEEEeC
Confidence            789999999999999999999999999877665433    4678899999999999999998877888999999999987


Q ss_pred             CCCCChhhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHh-CCceecccCcc
Q 014065          236 AGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVLEAYAMT  314 (431)
Q Consensus       236 ~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~-~~~i~~~yg~t  314 (431)
                        .+++..+++.|+++++|++.++|+++..+.+..... ...++++|.+++||+++++++.+.+.+.+ ++.+++.||+|
T Consensus       258 --~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~-~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~YG~t  334 (537)
T PLN02246        258 --KFEIGALLELIQRHKVTIAPFVPPIVLAIAKSPVVE-KYDLSSIRMVLSGAAPLGKELEDAFRAKLPNAVLGQGYGMT  334 (537)
T ss_pred             --CCCHHHHHHHHHHhCceEEEcchHHHHHHhcCcccc-ccCccceeEEEEecCcCCHHHHHHHHHHcCCCeEecccccc
Confidence              678999999999999999999999999998765432 23478999999999999999999999988 68899999999


Q ss_pred             cccCcccCCCCC--CCCCCCCCCccccc-cceEEEEC-CCCCcCCCCceeeEEEeCCccccccccCcchhhhcc-cCCce
Q 014065          315 EATHLMSSNPLP--EDGPHKPGSVGRPV-GQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAF-LFGWF  389 (431)
Q Consensus       315 E~~~~~~~~~~~--~~~~~~~~~~G~~~-~~~~~i~d-~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~  389 (431)
                      |++.+++.+...  +.....++++|+|+ +++++++| +++++++.|+.|||+++|+.++.||+++++.+...+ .+|||
T Consensus       335 E~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~~  414 (537)
T PLN02246        335 EAGPVLAMCLAFAKEPFPVKSGSCGTVVRNAELKIVDPETGASLPRNQPGEICIRGPQIMKGYLNDPEATANTIDKDGWL  414 (537)
T ss_pred             ccCcccccccccCCCCccccCCccccccCCcEEEEecCCCCCcCCCCCceEEEEECCchhccccCCchhhhhcccCCCCe
Confidence            998765543211  11233567899999 89999999 568999999999999999999999999999888877 47999


Q ss_pred             ecCceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          390 HTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       390 ~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      +|||+|+++++|++++.||.+|+||.+|++|+|.|||.+.
T Consensus       415 ~TGD~~~~~~~g~l~~~GR~dd~i~~~G~~i~~~eIE~~l  454 (537)
T PLN02246        415 HTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALL  454 (537)
T ss_pred             eecceEEEeCCCeEEEEecccceEEECCEEECcHHHHHHH
Confidence            9999999999999999999999999999999999999863

>PLN02430 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=1.3e-61  Score=481.08  Aligned_cols=421  Identities=23%  Similarity=0.327  Sum_probs=326.4

Q ss_pred             cccHHHHHHHHHHhcCCcceEEec---CC-----CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHH
Q 014065            3 GVTLIGLLNQVIDQFSSKRALSVS---GK-----FDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLA   74 (431)
Q Consensus         3 ~~tl~~~l~~~a~~~p~~~a~~~~---~~-----~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA   74 (431)
                      ..|+.++|.+.++++|+++|+...   ++     +.+||+|+.++++++|++|.+.|+++||+|+|+++|+++|+++++|
T Consensus        41 ~~t~~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~ew~~~~lA  120 (660)
T PLN02430         41 ITTAWDIFSKSVEKYPDNKMLGWRRIVDGKVGPYMWKTYKEVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEA  120 (660)
T ss_pred             CCCHHHHHHHHHHhCCCCceEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence            468999999999999999999642   11     2479999999999999999999999999999999999999999999


Q ss_pred             HHHhCcEEEecCCCCCHHHHHHHHhcCCceEEEecCCchhHHH-HHHHhcCcccccccccccchh------------hhh
Q 014065           75 VIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQ-AAASKLNISHATATLLDADSE------------LTL  141 (431)
Q Consensus        75 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~------------~~~  141 (431)
                      |+++|++++|+++.++.+++.++++.++++++|++........ ...........++.+.+....            ..+
T Consensus       121 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~  200 (660)
T PLN02430        121 CAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIKELLEPDCKSAKRLKAIVSFTSVTEEESDKASQIGVKTYSW  200 (660)
T ss_pred             HHHcCCeEEEeccCCCHHHHHHHHhccCCCEEEECHHHHHHHHhhhcccCCCceEEEEECCCChHHhhhhhcCCcEEEEH
Confidence            9999999999999999999999999999999999865322111 111111111111111110000            000


Q ss_pred             hhccccccccccccCCCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHH-----hcCCCCCeEEEecChhhHHH
Q 014065          142 SLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSV-----YKLTESDSTVIVLPLFHVHG  216 (431)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~-----~~~~~~~~~~~~~p~~~~~~  216 (431)
                      ..................++++++++|||||||.||||++||++++.++......     .++.++|++++.+|++|.++
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~~~~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~  280 (660)
T PLN02430        201 IDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAHILD  280 (660)
T ss_pred             HHHHHhhccCCCCCCCcCcCceEEEEECCCCCCCCCEEEeecHHHHHHHHHHHhhccccccCCCCCCEEEEeCcHHHHHH
Confidence            0000000000111223457899999999999999999999999998877654332     14678999999999999999


Q ss_pred             HHHHHHHHHhcCCEEEeCCCCCCChhhHHHHHHHhcceeeecchHHHHHHHhcccCC-----------------------
Q 014065          217 MLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAK-----------------------  273 (431)
Q Consensus       217 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~-----------------------  273 (431)
                      +.. ...++..|+++++.+.   ++..+++.+.+++||++.++|.+|+.+.+.....                       
T Consensus       281 ~~~-~~~~l~~G~~i~~~~~---~~~~l~~~l~~~~pt~~~~vP~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (660)
T PLN02430        281 RMI-EEYFFRKGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFERIHEGIQKALQELNPRRRLIFNALYKYKLAWM  356 (660)
T ss_pred             HHH-HHHHHHcCCEEEEeCC---ChhhHHHHHHHhCCcEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence            877 4567899999987642   6788999999999999999999999886531100                       


Q ss_pred             ------C-CC--------------CCCCccEEEeccCCCcHHHHHHHHHHhCCceecccCcccccCcccCCCCCCCCCCC
Q 014065          274 ------P-EP--------------VYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHK  332 (431)
Q Consensus       274 ------~-~~--------------~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~  332 (431)
                            . ..              ..+++|.+++||+++++++.+.++...++.+++.||+||+++..+....  .....
T Consensus       357 ~~~~~~~~~~~~~d~l~~~~i~~~~G~~lr~~~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~--~~~~~  434 (660)
T PLN02430        357 NRGYSHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFLRVTSCAFVVQGYGLTETLGPTTLGFP--DEMCM  434 (660)
T ss_pred             hcCCCCCCcchhHHHHHHHHHHHHhCCeEEEEEECCCCCCHHHHHHHHHhcCCCeeeecchhhhhhceEeecc--ccCCC
Confidence                  0 00              0158999999999999998765554334789999999999876665432  12345


Q ss_pred             CCCccccc-cceEEEEC--CCC-CcCCCCceeeEEEeCCccccccccCcchhhhcccCCceecCceEEEcCCCeEEEecc
Q 014065          333 PGSVGRPV-GQEIAILD--EIG-VPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGR  408 (431)
Q Consensus       333 ~~~~G~~~-~~~~~i~d--~~~-~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~gR  408 (431)
                      .+++|+|. +++++++|  +.| .+++.+..|||+|+||+++.||+++++.+++.|.+|||+|||+|++|+||++++.||
T Consensus       435 ~gsvG~p~~~~evki~d~~~~g~~~~~~~~~GEi~vrg~~v~~GY~~~~e~t~~~~~dGw~~TGDig~~d~dG~l~i~gR  514 (660)
T PLN02430        435 LGTVGAPAVYNELRLEEVPEMGYDPLGEPPRGEICVRGKCLFSGYYKNPELTEEVMKDGWFHTGDIGEILPNGVLKIIDR  514 (660)
T ss_pred             CCCccCCCCceEEEEEEcCCcCcccCCCCCcceEEecCCCccccccCChHHhhhhhhccceeccceEEECCCCcEEEEEc
Confidence            68999999 79999987  333 455666789999999999999999999999999999999999999999999999999


Q ss_pred             cccceec-CCeeccccceeccc
Q 014065          409 IKELINR-GGNLHESISLFLAK  429 (431)
Q Consensus       409 ~~d~i~~-~G~~i~~~~iE~a~  429 (431)
                      ++|+||. +|++|+|.+||.+.
T Consensus       515 ~kd~ik~~~G~~V~p~~IE~~l  536 (660)
T PLN02430        515 KKNLIKLSQGEYVALEYLENVY  536 (660)
T ss_pred             ccccEEcCCCcEEchHHHHHHH
Confidence            9999994 79999999999753

>PRK06839 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.9e-61  Score=466.04  Aligned_cols=408  Identities=26%  Similarity=0.407  Sum_probs=347.8

Q ss_pred             cHHHHHHHHHHhcCCcceEEecCCCcccHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCcHHHHHHHHHHHHhCcEEE
Q 014065            5 TLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVA-AGINAGDVVALTFPNTVEFVIMFLAVIRARATAA   83 (431)
Q Consensus         5 tl~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~-~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v   83 (431)
                      .+.+.|+++|+.+|+++|+++. ++++||+||+++++++|++|++ .|+++||+|+++++|+++++++++||+++|++++
T Consensus         3 ~~~~~~~~~a~~~p~~~a~~~~-~~~~ty~~l~~~~~~la~~L~~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~   81 (496)
T PRK06839          3 GIAYWIEKRAYLHPDRIAIITE-EEEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIAV   81 (496)
T ss_pred             cHHHHHHHHHHHCCCCeEEEEC-CceEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEE
Confidence            5789999999999999999975 4799999999999999999986 6999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCcccccccccccchhhhhhhccccccccccccCCCCCCCe
Q 014065           84 PLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDV  163 (431)
Q Consensus        84 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (431)
                      |+++.++.+++..+++.++++.++++++................. +.+.+      +.....   ...........+++
T Consensus        82 ~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~------~~~~~~---~~~~~~~~~~~~~~  151 (496)
T PRK06839         82 PLNIRLTENELIFQLKDSGTTVLFVEKTFQNMALSMQKVSYVQRV-ISITS------LKEIED---RKIDNFVEKNESAS  151 (496)
T ss_pred             ecCcccCHHHHHHHHHhcCceEEEEcHHHHHHHHHhhhccCcceE-EEecc------hHhhhc---cCCCCCCCCCCCCc
Confidence            999999999999999999999999988765554443322211111 11111      000000   00111223456889


Q ss_pred             EEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCCCCCCChhh
Q 014065          164 ALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSAST  243 (431)
Q Consensus       164 ~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~  243 (431)
                      ++++|||||||.||+|.++|.++..+.......+++..+++++..+|++|.+++...++.++..|+++++++  .+++..
T Consensus       152 ~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~g~~~~~~~--~~~~~~  229 (496)
T PRK06839        152 FIICYTSGTTGKPKGAVLTQENMFWNALNNTFAIDLTMHDRSIVLLPLFHIGGIGLFAFPTLFAGGVIIVPR--KFEPTK  229 (496)
T ss_pred             EEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHHHcCCCCCCeEEEeeCCcchhhHHHHHHHHHhcCcEEEEcc--CCCHHH
Confidence            999999999999999999999998777666677788899999999999999998887788999999999877  789999


Q ss_pred             HHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHhCCceecccCcccccCcccCC
Q 014065          244 FWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSN  323 (431)
Q Consensus       244 ~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~  323 (431)
                      +++.++++++|++.++|++++.+++..... ..+++++|.+++||++++++..+.+.+. ++++.+.||+||++..+...
T Consensus       230 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-~~~~~~lr~~~~gG~~~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~  307 (496)
T PRK06839        230 ALSMIEKHKVTVVMGVPTIHQALINCSKFE-TTNLQSVRWFYNGGAPCPEELMREFIDR-GFLFGQGFGMTETSPTVFML  307 (496)
T ss_pred             HHHHHHhhCCeEEEehHHHHHHHHhCcccc-cCCCcccceEEECCCCCCHHHHHHHHHh-CCeeEeeccCCCCCcceEec
Confidence            999999999999999999999998875433 3457899999999999999999999886 99999999999998755443


Q ss_pred             CCCCCCCCCCCCccccc-cceEEEECCCCCcCCCCceeeEEEeCCccccccccCcchhhhcccCCceecCceEEEcCCCe
Q 014065          324 PLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGY  402 (431)
Q Consensus       324 ~~~~~~~~~~~~~G~~~-~~~~~i~d~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~  402 (431)
                      .. .......+++|+|+ +.+++|+|++++.++.|+.|||+++|+.++.||+++++.+...+.+|||+|||++++|++|+
T Consensus       308 ~~-~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~  386 (496)
T PRK06839        308 SE-EDARRKVGSIGKPVLFCDYELIDENKNKVEVGEVGELLIRGPNVMKEYWNRPDATEETIQDGWLCTGDLARVDEDGF  386 (496)
T ss_pred             cc-ccccccCCCCcccCCCceEEEECCCcCCCCCCCceEEEEECCCcchhhcCChHHHHHHHcCCCeeecceEEEcCCCc
Confidence            22 22345667999999 89999999999999999999999999999999999999988888899999999999999999


Q ss_pred             EEEecccccceecCCeeccccceecc
Q 014065          403 LHLVGRIKELINRGGNLHESISLFLA  428 (431)
Q Consensus       403 l~~~gR~~d~i~~~G~~i~~~~iE~a  428 (431)
                      +++.||.+|+||.+|++|+|.+||.+
T Consensus       387 ~~~~GR~~d~i~~~G~~v~p~~iE~~  412 (496)
T PRK06839        387 VYIVGRKKEMIISGGENIYPLEVEQV  412 (496)
T ss_pred             EEEeccccceEEECCEEECHHHHHHH
Confidence            99999999999999999999999975

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=5.5e-61  Score=471.37  Aligned_cols=418  Identities=29%  Similarity=0.430  Sum_probs=352.2

Q ss_pred             CcccHHHHHHHHHHhcCCcceEEecCCCcccHHHHHHHHHHHHHHHHHc-CCCCCCEEEEECCCcHHHHHHHHHHHHhCc
Q 014065            2 EGVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAA-GINAGDVVALTFPNTVEFVIMFLAVIRARA   80 (431)
Q Consensus         2 ~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~~-gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~   80 (431)
                      ...|+.++|.+.++.+|+++|+++.+ +++||+||.++++++|+.|.+. |+++||+|+++++|+++++++++||+++|+
T Consensus         8 ~~~tl~~~l~~~a~~~~~~~a~~~~~-~~~Ty~~l~~~v~~~a~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~   86 (546)
T PRK08314          8 PETSLFHNLEVSARRYPDKTAIVFYG-RAISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILRANA   86 (546)
T ss_pred             CCCCHHHHHHHHHHHcCCCcceeecC-ceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCChHHHHHHHHHHHcCc
Confidence            46789999999999999999999765 6999999999999999999999 999999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCccccccc-cccc---c--------------------
Q 014065           81 TAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATAT-LLDA---D--------------------  136 (431)
Q Consensus        81 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~--------------------  136 (431)
                      +++|++|..+.+++.++++.++++.+|++...................... ..+.   .                    
T Consensus        87 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (546)
T PRK08314         87 VVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNLRLRHVIVAQYSDYLPAEPEIAVPAWLRAEPPLQALAP  166 (546)
T ss_pred             EEeecCcCcCHHHHHHHHHhCCCeEEEEccchhhhHHHHhhccCcceEEEecchhhcccccccCcccccccccccccccc
Confidence            999999999999999999999999999998766655544332211111100 0000   0                    


Q ss_pred             -hhhhhhhccccccccccccCCCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHH
Q 014065          137 -SELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVH  215 (431)
Q Consensus       137 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  215 (431)
                       ....+....  ............++++++++|||||||.||+|.++|.+++.++......+++..+|++++.+|++|.+
T Consensus       167 ~~~~~~~~~~--~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~  244 (546)
T PRK08314        167 GGVVAWKEAL--AAGLAPPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWSNSTPESVVLAVLPLFHVT  244 (546)
T ss_pred             cccccHHHHh--cccCCCCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCceEEEEcCchHHH
Confidence             000000000  00001122334678999999999999999999999999999888888888899999999999999999


Q ss_pred             HHHHHHHHHHhcCCEEEeCCCCCCChhhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHH
Q 014065          216 GMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVI  295 (431)
Q Consensus       216 ~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~  295 (431)
                      |+...++.++..|+++++.+  .+++..+++.++++++|++.++|+++..++...... ..+++++|.+++||+++++++
T Consensus       245 g~~~~~~~~l~~G~~i~~~~--~~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~~~~~-~~~~~~l~~~~~gG~~~~~~~  321 (546)
T PRK08314        245 GMVHSMNAPIYAGATVVLMP--RWDREAAARLIERYRVTHWTNIPTMVVDFLASPGLA-ERDLSSLRYIGGGGAAMPEAV  321 (546)
T ss_pred             HHHHHHHHHHHcCCeEEecC--CCCHHHHHHHHHHhcCceecccHHHHHHHHhCCCcc-ccCchhhheeeeccccCCHHH
Confidence            99888999999999999987  678999999999999999999999999988764322 344789999999999999999


Q ss_pred             HHHHHHHhCCceecccCcccccCcccCCCCCCCCCCCCCCccccc-cceEEEEC-CCCCcCCCCceeeEEEeCCcccccc
Q 014065          296 LSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKGY  373 (431)
Q Consensus       296 ~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d-~~~~~~~~~~~Gel~v~~~~~~~gy  373 (431)
                      .+++.+.++.++++.||+||++........   .....+++|+|+ +.+++++| +++++++.|+.|||+++|++++.||
T Consensus       322 ~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~---~~~~~~~~G~~~~g~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY  398 (546)
T PRK08314        322 AERLKELTGLDYVEGYGLTETMAQTHSNPP---DRPKLQCLGIPTFGVDARVIDPETLEELPPGEVGEIVVHGPQVFKGY  398 (546)
T ss_pred             HHHHHHHcCCcEEecccccccccceecCCC---cCCCCCccCcccCCeEEEEEeCCCCcCCCCCCceEEEEECCchhccc
Confidence            999999999999999999999877655432   123457899999 89999999 4689999999999999999999999


Q ss_pred             ccCcchhhhccc--C--CceecCceEEEcCCCeEEEecccccceecCCeeccccceecc
Q 014065          374 KNNPEANKSAFL--F--GWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLA  428 (431)
Q Consensus       374 ~~~~~~~~~~~~--~--g~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a  428 (431)
                      +++++.+++.|.  +  +||+|||+|+++++|++++.||.||+||++|++|+|.|||.+
T Consensus       399 ~~~~~~t~~~f~~~~~~~~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE~~  457 (546)
T PRK08314        399 WNRPEATAEAFIEIDGKRFFRTGDLGRMDEEGYFFITDRLKRMINASGFKVWPAEVENL  457 (546)
T ss_pred             cCChhHhhhhhhhcCCCceEecCCEEEEcCCCcEEEEecchhhEEeCCEEECHHHHHHH
Confidence            999888887763  2  499999999999999999999999999999999999999986

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional

Probab=100.00  E-value=8.6e-61  Score=467.91  Aligned_cols=416  Identities=29%  Similarity=0.386  Sum_probs=346.6

Q ss_pred             cccHHHHHHHHHHhcCCcceEEecCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcEE
Q 014065            3 GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATA   82 (431)
Q Consensus         3 ~~tl~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~   82 (431)
                      ..|+.++|++.|+.+|+++|++..+ +++||+||.++++++|..|.+.|+++|++|+++++|+++++++++||+++|+++
T Consensus        20 ~~~l~~~l~~~a~~~p~~~a~~~~~-~~~Ty~el~~~v~~la~~L~~~gi~~g~~V~v~~~n~~~~~~~~lA~~~~G~~~   98 (542)
T PRK06155         20 ERTLPAMLARQAERYPDRPLLVFGG-TRWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFLGCAWLGAIA   98 (542)
T ss_pred             ccCHHHHHHHHHHHCCCCeEEEeCC-ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHhCCEE
Confidence            4679999999999999999999755 699999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCcccccccccccch---hhhhhhccccccccccccCCCC
Q 014065           83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADS---ELTLSLAHSESDTNAISKLTND  159 (431)
Q Consensus        83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  159 (431)
                      +|+++.++.+++.++++.+++++++++.+....+.............+.+.....   ...+..................
T Consensus        99 vpl~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (542)
T PRK06155         99 VPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADPGDLPLPAVWLLDAPASVSVPAGWSTAPLPPLDAPAPAAAVQ  178 (542)
T ss_pred             EEeccccCHHHHHHHHHhcCceEEEEChhhHHHHHHhcccccCcceEEEecCccccccccccchhhhcccCCCCCCCCCC
Confidence            9999999999999999999999999998766555443222100011111111100   0000000000000111122345


Q ss_pred             CCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCCCCCC
Q 014065          160 PSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRF  239 (431)
Q Consensus       160 ~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~  239 (431)
                      ++++++++|||||||.||+|.++|.++..........+++.+++++++.+|++|..++.. ++.++..|+++++.+  .+
T Consensus       179 ~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~--~~  255 (542)
T PRK06155        179 PGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDLEIGADDVLYTTLPLFHTNALNA-FFQALLAGATYVLEP--RF  255 (542)
T ss_pred             CCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHHhcCCCCCCEEEEecCHHHHHHHHH-HHHHHHcCceEEeeC--CC
Confidence            789999999999999999999999999888777778888999999999999999999876 789999999999977  67


Q ss_pred             ChhhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHhCCceecccCcccccCc
Q 014065          240 SASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHL  319 (431)
Q Consensus       240 ~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~i~~~yg~tE~~~~  319 (431)
                      ++..++..|+++++|++.++|+++..+.+..... ....+++|.++.+|  +++.+.+.+++.+++++++.||+||++..
T Consensus       256 ~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~-~~~~~~l~~~~~g~--~~~~~~~~~~~~~~~~v~~~YG~tE~~~~  332 (542)
T PRK06155        256 SASGFWPAVRRHGATVTYLLGAMVSILLSQPARE-SDRAHRVRVALGPG--VPAALHAAFRERFGVDLLDGYGSTETNFV  332 (542)
T ss_pred             CHHHHHHHHHHhCCcEEEchHHHHHHHHcCcCcc-ccccCceEEEEEcC--CCHHHHHHHHHHcCCCEEeeecccccCcc
Confidence            8999999999999999999999999988765433 23456788777555  57899999999999999999999999877


Q ss_pred             ccCCCCCCCCCCCCCCccccc-cceEEEECCCCCcCCCCceeeEEEeCC---ccccccccCcchhhhcccCCceecCceE
Q 014065          320 MSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGP---NVTKGYKNNPEANKSAFLFGWFHTGDIG  395 (431)
Q Consensus       320 ~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d~~~~~~~~~~~Gel~v~~~---~~~~gy~~~~~~~~~~~~~g~~~TGD~~  395 (431)
                      +....    ....++++|.|. +.+++|+|+++++++.|+.|||+++++   +++.||+++++.+.+.|.++||+|||+|
T Consensus       333 ~~~~~----~~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~~Gei~v~~~~~~~~~~GY~~~~~~~~~~~~~~~~~TGD~~  408 (542)
T PRK06155        333 IAVTH----GSQRPGSMGRLAPGFEARVVDEHDQELPDGEPGELLLRADEPFAFATGYFGMPEKTVEAWRNLWFHTGDRV  408 (542)
T ss_pred             ccCCC----CCCCCCCcCccCCCceEEEECCCCCCCCCCCceEEEEecCCccccchhhcCCHHHHHHhhcCCcEeccceE
Confidence            65532    234567899998 899999999999999999999999998   6899999999999888889999999999


Q ss_pred             EEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          396 YFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       396 ~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      ++++||++++.||.+|+||++|++|+|.|||.+.
T Consensus       409 ~~~~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l  442 (542)
T PRK06155        409 VRDADGWFRFVDRIKDAIRRRGENISSFEVEQVL  442 (542)
T ss_pred             EEcCCceEEEEecCCCEEEeCCEEECHHHHHHHH
Confidence            9999999999999999999999999999999863

>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]

Probab=100.00  E-value=4e-62  Score=454.42  Aligned_cols=419  Identities=26%  Similarity=0.381  Sum_probs=338.9

Q ss_pred             cccHHHHHHHHHHhcCCcceEEecC-------CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHH
Q 014065            3 GVTLIGLLNQVIDQFSSKRALSVSG-------KFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAV   75 (431)
Q Consensus         3 ~~tl~~~l~~~a~~~p~~~a~~~~~-------~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~   75 (431)
                      -.|+.+.|.+.+..+|+.+++.+..       .+.+||+|..+++.+++.+|+..|+++++.|+|+..|+++|+++.+||
T Consensus        74 ~~T~~~~f~~~~~~~~~~p~LG~r~~~~~~~~~~~~tY~q~~e~~~~~~~~l~~lG~~~~~~VGIy~~N~pEWiis~~a~  153 (691)
T KOG1256|consen   74 PLTLYEGFRRSVEKSGNGPMLGTRVIVDGKGPYEWLTYKQVYERAENLGSGLRKLGVKEDSKVGIYAFNRPEWIISEMAC  153 (691)
T ss_pred             cccHHHHhhcchhccCCCCceeEEecccCCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCceEEEeccCChhhHHhHHHH
Confidence            4689999999999999999997643       268899999999999999999999999999999999999999999999


Q ss_pred             HHhCcEEEecCCCCCHHHHHHHHhcCCceEEEec-CCchhHHHHHHHhcCc--ccccccccccchh------------hh
Q 014065           76 IRARATAAPLNAAYTPDEFEFYLSDSESKLLLTP-AEGNAAAQAAASKLNI--SHATATLLDADSE------------LT  140 (431)
Q Consensus        76 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~------------~~  140 (431)
                      ...|++++|+..+++++.+.++++.+.+.++|++ ++....+.+.......  -..++.+.+....            ..
T Consensus       154 ~~~~~v~VplYdTlg~ea~~~Ii~~~e~~iv~vd~~~k~~~ll~~~~~~~~~~LK~iI~~~~~~~~~~~~~~~~gv~v~S  233 (691)
T KOG1256|consen  154 YAYSLVNVPLYDTLGAEAVHYIINHAEISIVFVDNAKKAEKLLEIKENDSLPSLKAIIQLDEPSDELKEKAENNGVEVYS  233 (691)
T ss_pred             HhcCCEEeecccCCCHHHHHHHHHhcceeEEEEeCHHHHHHHHhhcccccCccceeEEEecCCchhhhhhhhcCCeEEEE
Confidence            9999999999999999999999999999999999 4455555555443212  1222222222110            11


Q ss_pred             hhhcccccccccccc-CCCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHH---HHHh---cCCCCCeEEEecChhh
Q 014065          141 LSLAHSESDTNAISK-LTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNI---KSVY---KLTESDSTVIVLPLFH  213 (431)
Q Consensus       141 ~~~~~~~~~~~~~~~-~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~---~~~~---~~~~~~~~~~~~p~~~  213 (431)
                      +.....-........ .++.+++.+.|+|||||||.||||++||.|+.+.+...   ....   ....+|++++++|+.|
T Consensus       234 ~~e~~~lG~~~~~~~~~~p~p~d~atI~yTSGTTG~PKGVMLTH~Niv~~v~~~~~~~~~~~~~~~~~~dv~lSyLPLAH  313 (691)
T KOG1256|consen  234 WDEFEELGKKNQRKPRVPPKPDDLATICYTSGTTGNPKGVMLTHRNIVSDVAGIFFLSAAENAKATVGDDVYLSYLPLAH  313 (691)
T ss_pred             HHHHHhhcccccCCCCCCCCccceEEEEEcCCCCCCCceEEEeccceeehhhhhhhhhhcccccccccCceEEEeCcHHH
Confidence            111111111122222 57789999999999999999999999999998865432   1111   2234699999999999


Q ss_pred             HHHHHHHHHHHHhcCCEEEeCCCCCCChhhHHHHHHHhcceeeecchHHHHHHHhcccCC--------------------
Q 014065          214 VHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAK--------------------  273 (431)
Q Consensus       214 ~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~--------------------  273 (431)
                      ++..+. -...++.|+.+.+..+   |+..+...+++.+||.+.++|.+|+++-+...+.                    
T Consensus       314 i~er~~-~~~~~~~G~~IgF~~g---D~~~l~~dlk~lkPT~f~~VPRVl~riye~I~~~~~~sgflkr~l~~~A~~~k~  389 (691)
T KOG1256|consen  314 IFERVV-ELYTFYIGAKIGFARG---DILKLTDDLKELKPTVFPGVPRVLERIYEGIQKQVQKSGFLKRKLFNFAMAYKL  389 (691)
T ss_pred             HHHHHH-HHhHhhcccEEEEecC---ChHHHHHHHHHhCCcEEeccHhHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            999988 4555689999999864   8999999999999999999999999976532211                    


Q ss_pred             -------CC--C---------------CCCCccEEEeccCCCcHHHHHHHHHHhCCceecccCcccccCcccCCCCCCCC
Q 014065          274 -------PE--P---------------VYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDG  329 (431)
Q Consensus       274 -------~~--~---------------~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~  329 (431)
                             ..  .               .-..+|.+++|++|++++..+.++..+|++++++||+||+++.++....   .
T Consensus       390 ~~~~~~G~~~~~~~~~D~lVf~KI~~~LGg~vr~~~sGaAPls~ev~~F~r~~~g~~v~eGYGlTEts~g~~~~~~---~  466 (691)
T KOG1256|consen  390 EHRLMKGKSRSRDRFADKLVFHKIKQSLGGNVRLIISGAAPLSPEVLTFFRAALGCRVLEGYGLTETSAGTTLTLP---G  466 (691)
T ss_pred             HHHhhCCCCcccchHHHHHHHHHHHHHhcCceeEEEecCCCCCHHHHHHHHHhcCceeeecccccccCCceEeccC---C
Confidence                   00  0               1268899999999999999999999999999999999999955555433   2


Q ss_pred             CCCCCCccccc-cceEEEEC-CCCCcCCCCceeeEEEeCCccccccccCcchhhhcc-cCCceecCceEEEcCCCeEEEe
Q 014065          330 PHKPGSVGRPV-GQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAF-LFGWFHTGDIGYFDSDGYLHLV  406 (431)
Q Consensus       330 ~~~~~~~G~~~-~~~~~i~d-~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~  406 (431)
                      ....+++|.|+ +++++++| ++-..-+.+..||||++|++++.||+++|+.|++.+ .|||++|||+|+++++|.+.+.
T Consensus       467 d~~lgsvG~p~p~~~vKL~dvpe~ny~a~~~~GEIcirG~~Vf~GYyK~p~~T~e~ideDGWLhTGDiG~~~p~G~l~Ii  546 (691)
T KOG1256|consen  467 DNVLGSVGPPVPGNEVKLVDVPEMNYDADGSKGEICVRGPNVFMGYYKDPEKTAEAIDEDGWLHTGDIGEWDPNGTLKII  546 (691)
T ss_pred             CCCCCCcCCcccCceEEEechHHhCcCcCCCcceEEEecchhceeccCChHHHhhhhccccccccccceeECCCccEEEE
Confidence            33789999999 79999998 444444455579999999999999999999999999 6799999999999999999999


Q ss_pred             ccccccee-cCCeeccccceecc
Q 014065          407 GRIKELIN-RGGNLHESISLFLA  428 (431)
Q Consensus       407 gR~~d~i~-~~G~~i~~~~iE~a  428 (431)
                      ||+++++| .+|+.|.|+.||-+
T Consensus       547 dRkK~ifklaqGEyVaPe~IEni  569 (691)
T KOG1256|consen  547 DRKKNIFKLAQGEYVAPEKIENI  569 (691)
T ss_pred             ecccceEEcCCCCccChHHHHHH
Confidence            99999999 78999999999964

>PLN02574 4-coumarate--CoA ligase-like

Probab=100.00  E-value=2.9e-61  Score=473.35  Aligned_cols=414  Identities=28%  Similarity=0.415  Sum_probs=335.4

Q ss_pred             cHHHHHHHHHHhcCCcceEEecC-CCcccHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCcHHHHHHHHHHHHhCcEE
Q 014065            5 TLIGLLNQVIDQFSSKRALSVSG-KFDLTYSRIHELVERAASRLVA-AGINAGDVVALTFPNTVEFVIMFLAVIRARATA   82 (431)
Q Consensus         5 tl~~~l~~~a~~~p~~~a~~~~~-~~~~Ty~el~~~~~~~a~~L~~-~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~   82 (431)
                      ++.+.+... +.+|+++|+++.. +.++||+||.++++++|++|.+ .|+++||+|+++++|+++++++++||+++|+++
T Consensus        41 ~~~~~l~~~-~~~~~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~~G~~~gd~V~i~~~n~~~~~~~~la~~~~G~v~  119 (560)
T PLN02574         41 DAVSFIFSH-HNHNGDTALIDSSTGFSISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLLPNSVYFPVIFLAVLSLGGIV  119 (560)
T ss_pred             CHHHHHhcC-cccCCCCEEEECCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHhCeEE
Confidence            444444444 6789999999743 3489999999999999999999 999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCccccccccccc---c----hhhhhhhcccccccccccc
Q 014065           83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDA---D----SELTLSLAHSESDTNAISK  155 (431)
Q Consensus        83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~  155 (431)
                      +|++|..+.+++.++++.++++.++++.+..+....    ....  .+.....   +    ....+..... ........
T Consensus       120 v~l~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  192 (560)
T PLN02574        120 TTMNPSSSLGEIKKRVVDCSVGLAFTSPENVEKLSP----LGVP--VIGVPENYDFDSKRIEFPKFYELIK-EDFDFVPK  192 (560)
T ss_pred             eCcCcccCHHHHHHHHHhcCCEEEEECHHHHHHHHh----cCCc--EEecCcccccccCccCcccHHHHhh-cCCccccc
Confidence            999999999999999999999999998765443322    1111  1100000   0    0000110000 00111112


Q ss_pred             CCCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHH----hc-CCCCCeEEEecChhhHHHHHHHHHHHHhcCCE
Q 014065          156 LTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSV----YK-LTESDSTVIVLPLFHVHGMLAGLLSSFAAGAA  230 (431)
Q Consensus       156 ~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~----~~-~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~  230 (431)
                      ....++++++++|||||||.||+|.++|.++...+..+...    .. ...+++++..+|++|.+++...++.++..|++
T Consensus       193 ~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~  272 (560)
T PLN02574        193 PVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPMFHIYGLSLFVVGLLSLGST  272 (560)
T ss_pred             CCCCcCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhccccccccCCCCcEEEEecchHHHHHHHHHHHHHHhcCCE
Confidence            23456899999999999999999999999998777655431    22 23567889999999999998878888899999


Q ss_pred             EEeCCCCCCChhhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHh-CCceec
Q 014065          231 VTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVLE  309 (431)
Q Consensus       231 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~-~~~i~~  309 (431)
                      +++.+  .+++..+++.++++++|++.++|+++..+++........+++++|.+++||++++++.++.+.+.+ ++.+++
T Consensus       273 ~v~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~v~~  350 (560)
T PLN02574        273 IVVMR--RFDASDMVKVIDRFKVTHFPVVPPILMALTKKAKGVCGEVLKSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQ  350 (560)
T ss_pred             EEEec--CCCHHHHHHHHHHcCCeEEecCCHHHHHHHhCccccccCccccceEEEEecccCCHHHHHHHHHHCCCCcEEe
Confidence            99887  689999999999999999999999999998875432334578999999999999999999999888 789999


Q ss_pred             ccCcccccCcccCCCCCCCCCCCCCCccccc-cceEEEEC-CCCCcCCCCceeeEEEeCCccccccccCcchhhhcc-cC
Q 014065          310 AYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAF-LF  386 (431)
Q Consensus       310 ~yg~tE~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d-~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~  386 (431)
                      .||+||++.+...... .......+++|+|. +++++|+| ++|++++.|+.||||++|++++.||+++++.+.+.| .+
T Consensus       351 ~YG~tE~~~~~~~~~~-~~~~~~~~~vG~~~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~~~~GY~~~~~~t~~~~~~~  429 (560)
T PLN02574        351 GYGMTESTAVGTRGFN-TEKLSKYSSVGLLAPNMQAKVVDWSTGCLLPPGNCGELWIQGPGVMKGYLNNPKATQSTIDKD  429 (560)
T ss_pred             cccccccCceeecCCC-ccccCCCCceeeeCCCcEEEEEeCCCCcCCCCCCCeEEEEECcchhhhhcCChhHhhhhccCC
Confidence            9999999866543222 12234567899999 89999999 679999999999999999999999999999888777 47


Q ss_pred             CceecCceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          387 GWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       387 g~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      |||+|||+|++|++|++++.||.+|+||++|++|+|.|||.+.
T Consensus       430 g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l  472 (560)
T PLN02574        430 GWLRTGDIAYFDEDGYLYIVDRLKEIIKYKGFQIAPADLEAVL  472 (560)
T ss_pred             CCcccceEEEEECCCeEEEEecchhheEECCEEECHHHHHHHH
Confidence            9999999999999999999999999999999999999999753

>PRK06060 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.9e-61  Score=483.25  Aligned_cols=401  Identities=23%  Similarity=0.315  Sum_probs=336.3

Q ss_pred             CCcccHHHHHHHHHHh--cCCcceEEecCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHh
Q 014065            1 MEGVTLIGLLNQVIDQ--FSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRA   78 (431)
Q Consensus         1 m~~~tl~~~l~~~a~~--~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~   78 (431)
                      |-..|+.++|.+.++.  +||++|++. + ..+||+||+++++++|+.|.+.|+++||+|+++++|+++++++++||+++
T Consensus         1 ~~~~~~~~~~~~~a~~~~~pd~~a~~~-~-~~~Ty~eL~~~~~~lA~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~a   78 (705)
T PRK06060          1 MRNGNLAGLLAEQASEAGWYDRPAFYA-A-DVVTHGQIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLLACLAR   78 (705)
T ss_pred             CCCcCHHHHHHHHHhhccCCCceEEEe-c-CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHh
Confidence            5667899999998886  799999985 3 48999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCcccccccccccchhhhhhhccccccccccccCCC
Q 014065           79 RATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTN  158 (431)
Q Consensus        79 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (431)
                      |++++|++|.++.+++.++++.++++++|++.........    .    .....   ..  .+...   ....+......
T Consensus        79 G~~~vpi~p~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~----~----~~~~~---~~--~~~~~---~~~~~~~~~~~  142 (705)
T PRK06060         79 GVMAFLANPELHRDDHALAARNTEPALVVTSDALRDRFQP----S----RVAEA---AE--LMSEA---ARVAPGGYEPM  142 (705)
T ss_pred             CcEEEecCCCCCHHHHHHHHhcCCCcEEEEchHHhhhhcc----c----ccchh---hh--hhhhc---cccCCCCCCCC
Confidence            9999999999999999999999999999998653322110    0    00000   00  00000   00001111233


Q ss_pred             CCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHH-HHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCCCC
Q 014065          159 DPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIK-SVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAG  237 (431)
Q Consensus       159 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~  237 (431)
                      .++++++++|||||||.||+|.++|.++...+..+. ..+++.++++++...|++|.+++...++.++..|+++++.+. 
T Consensus       143 ~~~~~a~il~TSGSTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~-  221 (705)
T PRK06060        143 GGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKALRLTPEDTGLCSARMYFAYGLGNSVWFPLATGGSAVINSA-  221 (705)
T ss_pred             CCCCeEEEEECCCCCCCCcEEEEccccHHHHHHHHHHHhhCCCCcceeEEeccchhhcchhHHHHHHHhcCCEEEEeCC-
Confidence            568899999999999999999999999988776653 467888999999999999999887778889999999998763 


Q ss_pred             CCChhhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHh-CCceecccCcccc
Q 014065          238 RFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVLEAYAMTEA  316 (431)
Q Consensus       238 ~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~-~~~i~~~yg~tE~  316 (431)
                      .+++..++..+.++++|+++++|+++..+++....   ..++++|.+++||+++++++.+++.+.+ ++++++.||+||+
T Consensus       222 ~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~---~~~~slr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~YG~tE~  298 (705)
T PRK06060        222 PVTPEAAAILSARFGPSVLYGVPNFFARVIDSCSP---DSFRSLRCVVSAGEALELGLAERLMEFFGGIPILDGIGSTEV  298 (705)
T ss_pred             CCCHHHHHHHHHhcCCeEEeeHHHHHHHHHHhccc---ccccceeEEEEecCcCCHHHHHHHHHHcCCCceEeeeecccc
Confidence            46888889999999999999999999999875432   2468999999999999999999999988 5899999999999


Q ss_pred             cCcccCCCCCCCCCCCCCCccccc-cceEEEECCCCCcCCCCceeeEEEeCCccccccccCcchhhhcccCCceecCceE
Q 014065          317 THLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIG  395 (431)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~  395 (431)
                      +..+..+..   .....+++|+|+ +++++|+|++|++++.|+.|||+++|++++.||+++++.+..  .+|||+|||+|
T Consensus       299 ~~~~~~~~~---~~~~~~~iG~p~~~~~v~i~d~~g~~~~~g~~GEl~i~g~~v~~GY~~~~~~~~~--~~~~~~TGDl~  373 (705)
T PRK06060        299 GQTFVSNRV---DEWRLGTLGRVLPPYEIRVVAPDGTTAGPGVEGDLWVRGPAIAKGYWNRPDSPVA--NEGWLDTRDRV  373 (705)
T ss_pred             CceEEeccC---CCCCcCcccccCCCcEEEEECCCCCCCCCCCceEEEEccchhhhhhhCCCccccc--CCCcEECCeeE
Confidence            866544322   234567899999 799999999999999999999999999999999998876432  46899999999


Q ss_pred             EEcCCCeEEEecccccceecCCeeccccceecc
Q 014065          396 YFDSDGYLHLVGRIKELINRGGNLHESISLFLA  428 (431)
Q Consensus       396 ~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a  428 (431)
                      ++++||++++.||.||+||++|++|+|.|||.+
T Consensus       374 ~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~  406 (705)
T PRK06060        374 CIDSDGWVTYRCRADDTEVIGGVNVDPREVERL  406 (705)
T ss_pred             EECCCceEEEecccCceEEECCEEECHHHHHHH
Confidence            999999999999999999999999999999985

>PRK10524 prpE propionyl-CoA synthetase; Provisional

Probab=100.00  E-value=9.7e-61  Score=476.03  Aligned_cols=424  Identities=21%  Similarity=0.287  Sum_probs=335.9

Q ss_pred             HHHHHHHHHHhcCCcceEEec-----CCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCc
Q 014065            6 LIGLLNQVIDQFSSKRALSVS-----GKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARA   80 (431)
Q Consensus         6 l~~~l~~~a~~~p~~~a~~~~-----~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~   80 (431)
                      ..++|+++++.+|+++|+++.     +.+++||+||.++++++|++|++.|+++||+|+++++|+++++++++||+++|+
T Consensus        55 ~~~~l~~~~~~~p~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Ga  134 (629)
T PRK10524         55 CHNAVDRHLAKRPEQLALIAVSTETDEERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAEAAFAMLACARIGA  134 (629)
T ss_pred             HHHHHHHhhccCCCCeEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCc
Confidence            366788888889999999873     236899999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHHHHhcCCceEEEecCCc---------hhHHHHHHHhcCc-ccccccccccc--------hhhhhh
Q 014065           81 TAAPLNAAYTPDEFEFYLSDSESKLLLTPAEG---------NAAAQAAASKLNI-SHATATLLDAD--------SELTLS  142 (431)
Q Consensus        81 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~---------~~~~~~~~~~~~~-~~~~~~~~~~~--------~~~~~~  142 (431)
                      +++|++|.++.+++.++++.++++++|+++..         .+.+.+....... ....+.+....        ....+.
T Consensus       135 v~v~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~  214 (629)
T PRK10524        135 IHSVVFGGFASHSLAARIDDAKPVLIVSADAGSRGGKVVPYKPLLDEAIALAQHKPRHVLLVDRGLAPMARVAGRDVDYA  214 (629)
T ss_pred             EEEeeCCCCCHHHHHHHHHhcCCcEEEEccCcccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCcCcccCCcccHH
Confidence            99999999999999999999999999997642         2222222222111 11111111000        000000


Q ss_pred             hccccccccccccCCCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHH-HHHHHhcCCCCCeEEEecChhhHHHHHHHH
Q 014065          143 LAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVS-NIKSVYKLTESDSTVIVLPLFHVHGMLAGL  221 (431)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  221 (431)
                      ...........+.....++++++++|||||||.||+|.++|.+++.... .....+++.+++++++..|++|..++...+
T Consensus       215 ~~~~~~~~~~~~~~~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  294 (629)
T PRK10524        215 TLRAQHLGARVPVEWLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIFGGKAGETFFCASDIGWVVGHSYIV  294 (629)
T ss_pred             HHHhcCCCCCCCceeeCCCCceEEEeecCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCCEEEEcCCCCeeccchHHH
Confidence            0000000011111224568899999999999999999999998764443 344566888999999999999998887778


Q ss_pred             HHHHhcCCEEEeCCCC--CCChhhHHHHHHHhcceeeecchHHHHHHHhcccC-CCCCCCCCccEEEeccCCCcHHHHHH
Q 014065          222 LSSFAAGAAVTLPAAG--RFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVA-KPEPVYPKLRFIRSCSASLAPVILSR  298 (431)
Q Consensus       222 ~~~l~~G~~~~~~~~~--~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~-~~~~~~~~l~~i~~~g~~~~~~~~~~  298 (431)
                      +.++..|+++++.++.  ..++..+++.++++++|+++++|+.++.+.+.... ....+++++|.++++|+++++++.++
T Consensus       295 ~~~l~~G~~~v~~~g~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~  374 (629)
T PRK10524        295 YAPLLAGMATIMYEGLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDPALLRKHDLSSLRALFLAGEPLDEPTASW  374 (629)
T ss_pred             HHHHhCCCEEEEECCCCCCCChHHHHHHHHHcCceEEEeCHHHHHHHHhcCcccccccChhheeEEEEeCCCCCHHHHHH
Confidence            9999999999987642  34788999999999999999999999998765432 12345789999999999999999999


Q ss_pred             HHHHhCCceecccCcccccCcccCCCCC-CCCCCCCCCccccc-cceEEEECC-CCCcCCCCceeeEEEeCC---ccccc
Q 014065          299 LEEAFGAPVLEAYAMTEATHLMSSNPLP-EDGPHKPGSVGRPV-GQEIAILDE-IGVPQEGGAKGEVCIRGP---NVTKG  372 (431)
Q Consensus       299 ~~~~~~~~i~~~yg~tE~~~~~~~~~~~-~~~~~~~~~~G~~~-~~~~~i~d~-~~~~~~~~~~Gel~v~~~---~~~~g  372 (431)
                      +.+.+++++++.||+||++..+...... +......+++|+|+ |++++|+|+ +|++++.|+.|||+++||   +.+.|
T Consensus       375 ~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~~g~~~~~g~~Gel~i~gp~~~~~~~~  454 (629)
T PRK10524        375 ISEALGVPVIDNYWQTETGWPILAIARGVEDRPTRLGSPGVPMYGYNVKLLNEVTGEPCGPNEKGVLVIEGPLPPGCMQT  454 (629)
T ss_pred             HHHhcCCCeEeccccccccchhhcCCCCcccCcCCCCCcccCcCCceEEEEeCCCCCCCCCCCcEEEEEcCCCChhhcCC
Confidence            9999999999999999998543332211 11234568899999 899999998 899999999999999998   57789


Q ss_pred             cccCcchhhhcc----cCCceecCceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          373 YKNNPEANKSAF----LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       373 y~~~~~~~~~~~----~~g~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      |+++++.+.+.+    .++||+|||+|++|+||++++.||.||+||++|.+|+|.|||.+.
T Consensus       455 ~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~p~eIE~~l  515 (629)
T PRK10524        455 VWGDDDRFVKTYWSLFGRQVYSTFDWGIRDADGYYFILGRTDDVINVAGHRLGTREIEESI  515 (629)
T ss_pred             ccCChHHHHHhhhccCCCcEEEcCCcEEEcCCCcEEEEEEecCeEEeCCEEeCHHHHHHHH
Confidence            999887765543    358999999999999999999999999999999999999999864

>PRK07470 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.6e-60  Score=465.95  Aligned_cols=422  Identities=27%  Similarity=0.389  Sum_probs=343.6

Q ss_pred             cccHHHHHHHHHHhcCCcceEEecCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcEE
Q 014065            3 GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATA   82 (431)
Q Consensus         3 ~~tl~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~   82 (431)
                      .+|+.++|...|+++|+++|+.+.+ +++||+||.++++++|+.|++.|+++||+|+++++|+++++++++||+++|+++
T Consensus         6 ~~~~~~~~~~~a~~~p~~~a~~~~~-~~~Ty~el~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~G~~~   84 (528)
T PRK07470          6 VMNLAHFLRQAARRFPDRIALVWGD-RSWTWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFESMFAAFRLGAVW   84 (528)
T ss_pred             CCCHHHHHHHHHHHCCCceEEEECC-ccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhCCeEE
Confidence            4689999999999999999998755 799999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCcccccccccccchhhhhhhccccccccccccCCCCCCC
Q 014065           83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSD  162 (431)
Q Consensus        83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (431)
                      +++++..+.+++.++++.++++.++++.+..+...............+.+........+..................+++
T Consensus        85 v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (528)
T PRK07470         85 VPTNFRQTPDEVAYLAEASGARAMICHADFPEHAAAVRAASPDLTHVVAIGGARAGLDYEALVARHLGARVANAAVDHDD  164 (528)
T ss_pred             EecCccCCHHHHHHHHHhcCceEEEEcchhHHHHHHHHhhCCcCceEEEeCCCcccccHHHHHhcCCCCCCCcccCCCCC
Confidence            99999999999999999999999999987655544433222111111111111000011100000001111223346789


Q ss_pred             eEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHh--cCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCCCCCCC
Q 014065          163 VALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVY--KLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFS  240 (431)
Q Consensus       163 ~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~  240 (431)
                      +++++|||||||.||+|.++|.++...+.......  +..+.++++..+|++|.+++.. ++ .+..|++.++.+...++
T Consensus       165 ~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~-~~~~g~~~~~~~~~~~~  242 (528)
T PRK07470        165 PCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADLMPGTTEQDASLVVAPLSHGAGIHQ-LC-QVARGAATVLLPSERFD  242 (528)
T ss_pred             eEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHhccCCCcccEEEEeccchhHHHHHH-HH-HHhcCceEEEecccCcC
Confidence            99999999999999999999999876554332222  5677899999999999998864 44 56777777776655679


Q ss_pred             hhhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHhCCceecccCcccccCcc
Q 014065          241 ASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLM  320 (431)
Q Consensus       241 ~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~  320 (431)
                      +..+++.|+++++|++.++|++++.+.+..... ..+++++|.+++||+++++...+++.+.++..+++.||+||+++.+
T Consensus       243 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~YG~TE~~~~~  321 (528)
T PRK07470        243 PAEVWALVERHRVTNLFTVPTILKMLVEHPAVD-RYDHSSLRYVIYAGAPMYRADQKRALAKLGKVLVQYFGLGEVTGNI  321 (528)
T ss_pred             HHHHHHHHHhcCCeEEechHHHHHHHHhCcCcC-CCCCcceEEEEEcCCCCCHHHHHHHHHHhCcHHHHhCCCcccCCce
Confidence            999999999999999999999999998765432 3457899999999999999999999888899999999999998766


Q ss_pred             cCCCCC----CC-CCCCCCCccccc-cceEEEECCCCCcCCCCceeeEEEeCCccccccccCcchhhhcccCCceecCce
Q 014065          321 SSNPLP----ED-GPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDI  394 (431)
Q Consensus       321 ~~~~~~----~~-~~~~~~~~G~~~-~~~~~i~d~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~  394 (431)
                      ......    +. .....+++|+|+ +++++++|++|++++.|+.|||+++|+.++.||+++++.++..|.+|||+|||+
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~TGDl  401 (528)
T PRK07470        322 TVLPPALHDAEDGPDARIGTCGFERTGMEVQIQDDEGRELPPGETGEICVIGPAVFAGYYNNPEANAKAFRDGWFRTGDL  401 (528)
T ss_pred             eecchhhccccccccceeeccCcccCCcEEEEECCCCCCCCCCCceEEEEeCCccchhhcCCHHHHHhhhcCCcEeccee
Confidence            543211    00 123456889999 899999999999999999999999999999999999999988889999999999


Q ss_pred             EEEcCCCeEEEecccccceecCCeeccccceecc
Q 014065          395 GYFDSDGYLHLVGRIKELINRGGNLHESISLFLA  428 (431)
Q Consensus       395 ~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a  428 (431)
                      ++++++|++++.||.||+||++|++|+|.+||.+
T Consensus       402 ~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~IE~~  435 (528)
T PRK07470        402 GHLDARGFLYITGRASDMYISGGSNVYPREIEEK  435 (528)
T ss_pred             EEEccCCeEEEeCCccceEEeCCEEECHHHHHHH
Confidence            9999999999999999999999999999999976

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]

Probab=100.00  E-value=8.4e-62  Score=461.63  Aligned_cols=400  Identities=35%  Similarity=0.597  Sum_probs=318.5

Q ss_pred             HHHHHHhcCCcceEEecCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcEEEecCCCC
Q 014065           10 LNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAY   89 (431)
Q Consensus        10 l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~   89 (431)
                      |+++|+++||++|+++.+++++||+||+++++++|..|++.|+++||+|+++++|+++++++++||+++|++++|++|.+
T Consensus         1 f~~~a~~~pd~~a~~~~~~~~~Ty~~l~~~v~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~~A~~~~G~~~v~l~~~~   80 (417)
T PF00501_consen    1 FERQAQRYPDRIALIDDEGRSLTYKQLYERVRKLAAALRKLGVKKGDRVAILLPNSIEFVVAFLACLRAGAIPVPLDPSL   80 (417)
T ss_dssp             HHHHHHHSTTSEEEEETTTEEEEHHHHHHHHHHHHHHHHHTTSSTTSEEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS
T ss_pred             ChhHHhhCCCceEEEECCCEEEEHHHHHHHHHHHhhHHHHhCCCccccccccCCccceeeeeeccccccccccccccccc
Confidence            67899999999999983447999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhcCCceEEEe----cCCchhHHHHHHHhcCcccccccccccc--hhhhhhhccccccccccccCC-CCCCC
Q 014065           90 TPDEFEFYLSDSESKLLLT----PAEGNAAAQAAASKLNISHATATLLDAD--SELTLSLAHSESDTNAISKLT-NDPSD  162 (431)
Q Consensus        90 ~~~~l~~~l~~~~~~~ii~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~  162 (431)
                      +.+++.++++.++++++|+    +......+...............+....  ....+..........    .. ..+++
T Consensus        81 ~~~~~~~~l~~~~~~~ii~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~  156 (417)
T PF00501_consen   81 SEDELRHILRQSGPKVIITSEAVDSEPLKKLKSIFKQEDPSSSIIILDRDDLPKKEALKSASLSDEPQ----SPEDSPDD  156 (417)
T ss_dssp             SHHHHHHHHHHHTESEEEECHHHSCHHHHHHHHHHTTSTTTEEEEEESHSSCTTCHHHHHHHHCHCSH----STTHTTTS
T ss_pred             ccccccccccccceeEEEEeccccccccccchhhhccccccccccccccccccccccccccccccccc----cCCCCccc
Confidence            9999999999999999997    2211111222222111112121111110  000011000000000    00 05699


Q ss_pred             eEEEEeccCCCCCCCeeeechHHHHHHHHHHH--HHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCCCCC-C
Q 014065          163 VALFLHTSGTTSRPKGVPLTQNNLAASVSNIK--SVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGR-F  239 (431)
Q Consensus       163 ~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~--~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~-~  239 (431)
                      +++++|||||||.||+|.++|.++++.+..+.  ...+++  +++++.+|++|.+++...++.++..|+++++++... .
T Consensus       157 ~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~--d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~  234 (417)
T PF00501_consen  157 PAFILFTSGTTGKPKGVVLTHRNLLAQARALALPEYFGLG--DRILSFLPLSHIFGLISALLAALFSGATLVLPSPFDLF  234 (417)
T ss_dssp             EEEEEEESSSSSSEEEEEEEHHHHHHHHHHHHHHHTTTTT--TEEEESS-TTSHHHHHHHHHHHHHCTSEEEEESSHHHH
T ss_pred             eeEeeccccccccccccccccccccccccccccccccccC--ceEEeecccccccccccccccccccccccccccccccc
Confidence            99999999999999999999999998887764  222333  599999999999999677999999999999987311 1


Q ss_pred             ChhhHHHHHHHhcceeeecchHHHHHHHhcccCC---CCCCCCCccEEEeccCCCcHHHHHHHHHHhCC-ceecccCccc
Q 014065          240 SASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAK---PEPVYPKLRFIRSCSASLAPVILSRLEEAFGA-PVLEAYAMTE  315 (431)
Q Consensus       240 ~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~---~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~-~i~~~yg~tE  315 (431)
                      ++..+++.+++++++++.++|++++.+++.....   ...+++++|.++++|++++++..+.+++.++. ++++.||+||
T Consensus       235 ~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE  314 (417)
T PF00501_consen  235 DPESLLELISRYKPTILFAVPSMLEALLQSPEEKTKISKKDLSSLRTVISGGEPLPPDLLRRLRKAFGNAPIINLYGSTE  314 (417)
T ss_dssp             HHHHHHHHHHHHTESEEEEEHHHHHHHHHHHHTTHHGTTTTGTT-SEEEEESST-CHHHHHHHHHHHTTSEEEEEEEEGG
T ss_pred             ccccchhcccccccccccccccccccccccccccccccccccccccccccccccCChhhccccccccccccceecccccc
Confidence            2467899999999999999999999999843222   13458889999999999999999999999986 9999999999


Q ss_pred             ccCcccCCCCCCCCCCCCCCccccc-cceEEEECCC-CCcCCCCceeeEEEeCCccccccccCcchhhhcccC-CceecC
Q 014065          316 ATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEI-GVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF-GWFHTG  392 (431)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d~~-~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~-g~~~TG  392 (431)
                      ++.++.... ........+++|.|+ +++++|+|++ +++++.|+.|||+++||.++.||+++++.+++.|.+ |||+||
T Consensus       315 ~~~~~~~~~-~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~g~~Gei~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TG  393 (417)
T PF00501_consen  315 TGSIATIRP-PEDDIEKPGSVGKPLPGVEVKIVDPNTGEPLPPGEPGEIVIRGPNVFSGYYNDPELTAEAFIDDGWYRTG  393 (417)
T ss_dssp             GSSEEEEEE-TTTHHSSTTSEBEESTTEEEEEECTTTSSBESTTSEEEEEEESTTSBSEETTBHHHHHHHEETTSEEEEE
T ss_pred             cceeeeccc-ccccccccccccccccccccccccccccccccccccccccccCCccceeeeccccccccccccccceecc
Confidence            999887542 112334677899998 8999999977 999999999999999999999999999999998876 899999


Q ss_pred             ceEEEcCCCeEEEecccccceecC
Q 014065          393 DIGYFDSDGYLHLVGRIKELINRG  416 (431)
Q Consensus       393 D~~~~~~~g~l~~~gR~~d~i~~~  416 (431)
                      |+|++|+||+++++||.||+||++
T Consensus       394 D~g~~d~~G~~~~~GR~~~~i~~~  417 (417)
T PF00501_consen  394 DLGRLDEDGYLYILGRSDDMIKVR  417 (417)
T ss_dssp             EEEEEETTSEEEEEEEGSCEEEET
T ss_pred             eEEEECCCCeEEEEEeeCCEEEeC
Confidence            999999999999999999999863

This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....

>PRK05857 acyl-CoA synthetase; Validated

Probab=100.00  E-value=6.6e-61  Score=468.78  Aligned_cols=417  Identities=20%  Similarity=0.248  Sum_probs=332.0

Q ss_pred             ccHHHHHHHHHHhcCCcceEEecC-CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcEE
Q 014065            4 VTLIGLLNQVIDQFSSKRALSVSG-KFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATA   82 (431)
Q Consensus         4 ~tl~~~l~~~a~~~p~~~a~~~~~-~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~   82 (431)
                      .|+.+.|.+.|+++|+++|+++.+ ++++||+||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus        14 ~~~~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~e~~~~~lA~~~~G~v~   93 (540)
T PRK05857         14 STVLDRVFEQARQQPEAIALRRCDGTSALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPETYLSVLACAKLGAIA   93 (540)
T ss_pred             cchHHHHHHHHhhCCCcEEEeecCCCceeeHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcCCCHHHHHHHHHHHHcCeEE
Confidence            578999999999999999998644 4689999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCcccccccccccchhhhhhhccccccccccccCCCCCCC
Q 014065           83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSD  162 (431)
Q Consensus        83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (431)
                      +|+++.++.+++.++++.++++.+|+++........+........ .+.. +.......... ...............++
T Consensus        94 v~l~~~~~~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  170 (540)
T PRK05857         94 VMADGNLPIAAIERFCQITDPAAALVAPGSKMASSAVPEALHSIP-VIAV-DIAAVTRESEH-SLDAASLAGNADQGSED  170 (540)
T ss_pred             EecCccCCHHHHHHHHHhcCCceEEEeccchhccccccccccccc-eeEe-ecccccccccc-cccccccccccCCCCCC
Confidence            999999999999999999999999999864322111111100000 0011 10000000000 00000011123346789


Q ss_pred             eEEEEeccCCCCCCCeeeechHHHHHHHHHHHH----HhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCCCCC
Q 014065          163 VALFLHTSGTTSRPKGVPLTQNNLAASVSNIKS----VYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGR  238 (431)
Q Consensus       163 ~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~----~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~  238 (431)
                      +++++|||||||.||+|.++|.++.++......    .+++..+++.+..+|++|.++++. .+.++..|+++++.+   
T Consensus       171 ~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~l~~-~~~~l~~G~~~v~~~---  246 (540)
T PRK05857        171 PLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEGLNWVTWVVGETTYSPLPATHIGGLWW-ILTCLMHGGLCVTGG---  246 (540)
T ss_pred             eEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhccccccccccCceeeecCCccccchHHH-HHHHhhcceeEEecC---
Confidence            999999999999999999999999876543321    235567889999999999999876 778899999887643   


Q ss_pred             CChhhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHhCCceecccCcccccC
Q 014065          239 FSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATH  318 (431)
Q Consensus       239 ~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~i~~~yg~tE~~~  318 (431)
                      .++..+++.|+++++|+++++|++++.+....... ..+++++|.+++||++++....+ +.+.+++++++.||+||++.
T Consensus       247 ~~~~~~~~~i~~~~it~~~~~P~~~~~l~~~~~~~-~~~~~~lr~~~~gG~~~~~~~~~-~~~~~g~~i~~~YG~TE~~~  324 (540)
T PRK05857        247 ENTTSLLEILTTNAVATTCLVPTLLSKLVSELKSA-NATVPSLRLVGYGGSRAIAADVR-FIEATGVRTAQVYGLSETGC  324 (540)
T ss_pred             CChhHHHHHHHhcCcceEEeChHHHHHHHhccccC-CCcCccceEEEEcCccCCchhHH-HHHHhCCeeecccCCCcCCc
Confidence            47889999999999999999999999998765432 34578999999999999988875 44577999999999999986


Q ss_pred             cccCCCCCCC--CCCCCCCccccc-cceEEEECCCCCc------CCCCceeeEEEeCCccccccccCcchhhhcccCCce
Q 014065          319 LMSSNPLPED--GPHKPGSVGRPV-GQEIAILDEIGVP------QEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWF  389 (431)
Q Consensus       319 ~~~~~~~~~~--~~~~~~~~G~~~-~~~~~i~d~~~~~------~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~  389 (431)
                      .....+....  ....++++|+|+ |++++|+|+++..      ++.++.|||+++|++++.||+++++.+.+.|.+|||
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~d~~~~~~~~~~~~~~~~~Gel~v~g~~~~~GY~~~~~~t~~~~~~g~~  404 (540)
T PRK05857        325 TALCLPTDDGSIVKIEAGAVGRPYPGVDVYLAATDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPERTAEVLIDGWV  404 (540)
T ss_pred             eeeecccccccccccccCCcCcccCCcEEEEECccccCccccccCCCCCcceEEEeCcchhhhhhCCccchhhhcCCCce
Confidence            5443322111  123467899999 8999999987652      245789999999999999999999999999999999


Q ss_pred             ecCceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          390 HTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       390 ~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      +|||+|++|++|++++.||.+|+||++|.+|+|.|||.+.
T Consensus       405 ~TGDlg~~d~~g~l~~~GR~~~~ik~~G~~v~p~eIE~~l  444 (540)
T PRK05857        405 NTGDLLERREDGFFYIKGRSSEMIICGGVNIAPDEVDRIA  444 (540)
T ss_pred             eccceEEEcCCceEEEeccccccEecCCEEECHHHHHHHH
Confidence            9999999999999999999999999999999999999863

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.9e-60  Score=464.36  Aligned_cols=422  Identities=31%  Similarity=0.449  Sum_probs=359.9

Q ss_pred             CCcccHHHHHHHHHHhcCCcceEEecCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCc
Q 014065            1 MEGVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARA   80 (431)
Q Consensus         1 m~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~   80 (431)
                      |.++++.++|.+.++.+|+++|+.+.+ +.+||+||+++++++|+.|.+.|+++|++|+++++|+++++++++||+++|+
T Consensus         3 ~~~~~l~~~l~~~~~~~p~~~a~~~~~-~~~Ty~~l~~~~~~~a~~L~~~g~~~~~~V~l~~~~~~~~~~~~la~~~~G~   81 (521)
T PRK06187          3 DYPLTIGRILRHGARKHPDKEAVYFDG-RRTTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIGA   81 (521)
T ss_pred             cccCCHHHHHHHHHHHCCCceEEEeCC-ceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCe
Confidence            578899999999999999999999766 5799999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCcccccccccccch------hhhhhhccccccccccc
Q 014065           81 TAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADS------ELTLSLAHSESDTNAIS  154 (431)
Q Consensus        81 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~  154 (431)
                      +++|+++.++.+++..+++.++++.++++.+..+.+.............+...+...      ...+..... .......
T Consensus        82 ~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  160 (521)
T PRK06187         82 VLHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAILPQLPTVRTVIVEGDGPAAPLAPEVGEYEELLA-AASDTFD  160 (521)
T ss_pred             EEEecccCCCHHHHHHHHHhcCCeEEEEcchHHHHHHHHhhccCCccEEEEecCccccccccccccHHHHhh-cCCccCC
Confidence            999999999999999999999999999998877666655544332222222211110      000111000 1111112


Q ss_pred             cCCCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeC
Q 014065          155 KLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLP  234 (431)
Q Consensus       155 ~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~  234 (431)
                      ......+++++++|||||||.||++.++|.++..........+++.++++++..+|++|.+++.. .+.++..|++++++
T Consensus       161 ~~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~l~~G~~~v~~  239 (521)
T PRK06187        161 FPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWLKLSRDDVYLVIVPMFHVHAWGL-PYLALMAGAKQVIP  239 (521)
T ss_pred             CCCCCccceEEEEECCCCCCCCceEEeehHHHHHHHHHHHHhhCCCCCCEEEEeCCchHHhhHHH-HHHHHHhCCEEEec
Confidence            23455688999999999999999999999999988888888889999999999999999998877 44499999999998


Q ss_pred             CCCCCChhhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHhCCceecccCcc
Q 014065          235 AAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMT  314 (431)
Q Consensus       235 ~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~i~~~yg~t  314 (431)
                      +  .+++..+++.++++++|.++++|++++.+.+..... ..+++++|.+++||++++++..+++.+.+++++++.||+|
T Consensus       240 ~--~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~-~~~~~~l~~v~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~t  316 (521)
T PRK06187        240 R--RFDPENLLDLIETERVTFFFAVPTIWQMLLKAPRAY-FVDFSSLRLVIYGGAALPPALLREFKEKFGIDLVQGYGMT  316 (521)
T ss_pred             C--CCCHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCCC-ccCcchhhEEEEcCcCCCHHHHHHHHHHhCcchheeeccC
Confidence            7  459999999999999999999999999998877653 3457899999999999999999999999999999999999


Q ss_pred             cccCcccCCCCCCCC---CCCCCCccccc-cceEEEECCCCCcCCC--CceeeEEEeCCccccccccCcchhhhcccCCc
Q 014065          315 EATHLMSSNPLPEDG---PHKPGSVGRPV-GQEIAILDEIGVPQEG--GAKGEVCIRGPNVTKGYKNNPEANKSAFLFGW  388 (431)
Q Consensus       315 E~~~~~~~~~~~~~~---~~~~~~~G~~~-~~~~~i~d~~~~~~~~--~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~  388 (431)
                      |++++..........   .....++|+|+ +..++|+|+++.+++.  |+.|||+++++.+..||+++++.+.+.|.+||
T Consensus       317 E~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~~  396 (521)
T PRK06187        317 ETSPVVSVLPPEDQLPGQWTKRRSAGRPLPGVEARIVDDDGDELPPDGGEVGEIIVRGPWLMQGYWNRPEATAETIDGGW  396 (521)
T ss_pred             ccCcccccCCcccccccccccCCccccccCCeEEEEECCCCCCCCCCCCCeeEEEEECcchhhhhcCCHHHHHHHhhCCc
Confidence            998776665432211   13667899999 7999999999999988  99999999999999999999999988899999


Q ss_pred             eecCceEEEcCCCeEEEecccccceecCCeeccccceecc
Q 014065          389 FHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLA  428 (431)
Q Consensus       389 ~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a  428 (431)
                      |+|||+++++++|.+++.||.+|+||.+|.+++|.+||.+
T Consensus       397 ~~tGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~IE~~  436 (521)
T PRK06187        397 LHTGDVGYIDEDGYLYITDRIKDVIISGGENIYPRELEDA  436 (521)
T ss_pred             eeccceEEEcCCCCEEEeecccceEEcCCeEECHHHHHHH
Confidence            9999999999999999999999999999999999999974

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=3.3e-60  Score=459.21  Aligned_cols=399  Identities=31%  Similarity=0.426  Sum_probs=342.1

Q ss_pred             ccHHHHHHHHHHhcCCcceEEecCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcEEE
Q 014065            4 VTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAA   83 (431)
Q Consensus         4 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v   83 (431)
                      +|+.+.|+++|+++|+++|+.+.+ +.+||+||+++++++|++|.+.|+++||+|+++++|+++++++++||+++|++++
T Consensus         2 ~~~~~~l~~~a~~~p~~~a~~~~~-~~~Ty~el~~~~~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v   80 (483)
T PRK03640          2 ETMPNWLKQRAFLTPDRTAIEFEE-KKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGAVAV   80 (483)
T ss_pred             CcHHHHHHHHHHhCCCceEEEeCC-eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhCCcEEE
Confidence            589999999999999999998765 7999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCcccccccccccchhhhhhhccccccccccccCCCCCCCe
Q 014065           84 PLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDV  163 (431)
Q Consensus        84 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (431)
                      |+++..+.+++..+++.++++.++++............        ..+.    .  +...   .............+++
T Consensus        81 ~i~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~--------~~~~----~--~~~~---~~~~~~~~~~~~~~~~  143 (483)
T PRK03640         81 LLNTRLSREELLWQLDDAEVKCLITDDDFEAKLIPGIS--------VKFA----E--LMNG---PKEEAEIQEEFDLDEV  143 (483)
T ss_pred             ecCcCCCHHHHHHHHHhCCCCEEEEcchhhHHHhhhcc--------ccHH----H--Hhhc---ccccCCCCCCCCCCCe
Confidence            99999999999999999999999998765433221110        0000    0  0000   0011112223456899


Q ss_pred             EEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCCCCCCChhh
Q 014065          164 ALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSAST  243 (431)
Q Consensus       164 ~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~  243 (431)
                      ++++|||||||.||+|.++|.++...+......+++.++++++..+|++|.+++.. ++.++..|+++++.+  .+++..
T Consensus       144 a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~~~~~--~~~~~~  220 (483)
T PRK03640        144 ATIMYTSGTTGKPKGVIQTYGNHWWSAVGSALNLGLTEDDCWLAAVPIFHISGLSI-LMRSVIYGMRVVLVE--KFDAEK  220 (483)
T ss_pred             EEEEeCCCcCCCCcEEEEecHHHHHHHHHHHHhcCCCcCcEEEEecCHHHHHHHHH-HHHHHhcCCEEEecC--CCCHHH
Confidence            99999999999999999999999888777777788999999999999999999876 788899999999987  678999


Q ss_pred             HHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHhCCceecccCcccccCcccCC
Q 014065          244 FWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSN  323 (431)
Q Consensus       244 ~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~  323 (431)
                      +++.++++++|++.++|+++..+.+.....  ....++|.+++||+++++...+.+.+ +++++++.||+||++..+...
T Consensus       221 ~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~--~~~~~lr~~~~~g~~~~~~~~~~~~~-~~~~~~~~YG~tE~~~~~~~~  297 (483)
T PRK03640        221 INKLLQTGGVTIISVVSTMLQRLLERLGEG--TYPSSFRCMLLGGGPAPKPLLEQCKE-KGIPVYQSYGMTETASQIVTL  297 (483)
T ss_pred             HHHHHHHhCCcEEEeHHHHHHHHHhCcCcc--ccCCcceEEEEcCCCCCHHHHHHHHH-hCCCeeeeeccCccccccccc
Confidence            999999999999999999999998765432  22468999999999999999998876 499999999999987654433


Q ss_pred             CCCCCCCCCCCCccccc-cceEEEECCCCCcCCCCceeeEEEeCCccccccccCcchhhhcccCCceecCceEEEcCCCe
Q 014065          324 PLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGY  402 (431)
Q Consensus       324 ~~~~~~~~~~~~~G~~~-~~~~~i~d~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~  402 (431)
                      . .......++++|+|+ ++++++.|+ +.+++.|+.|||+++|++++.||+++++.+...|.+|||+|||++++++||+
T Consensus       298 ~-~~~~~~~~~~vG~p~~~~~~~i~~~-~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~tGDl~~~~~~g~  375 (483)
T PRK03640        298 S-PEDALTKLGSAGKPLFPCELKIEKD-GVVVPPFEEGEIVVKGPNVTKGYLNREDATRETFQDGWFKTGDIGYLDEEGF  375 (483)
T ss_pred             C-cccccccCCCcccccCCcEEEEecC-CCcCCCCCceEEEEECcchhhhhcCCHHHHHHHHhcCCeeccceEEEcCCCC
Confidence            2 222345678999999 899999986 4789999999999999999999999999998888899999999999999999


Q ss_pred             EEEecccccceecCCeeccccceecc
Q 014065          403 LHLVGRIKELINRGGNLHESISLFLA  428 (431)
Q Consensus       403 l~~~gR~~d~i~~~G~~i~~~~iE~a  428 (431)
                      +++.||++|++|.+|.+|+|.+||.+
T Consensus       376 l~~~GR~~~~i~~~G~~v~~~~ie~~  401 (483)
T PRK03640        376 LYVLDRRSDLIISGGENIYPAEIEEV  401 (483)
T ss_pred             EEEeecccCeEEeCCEEECHHHHHHH
Confidence            99999999999999999999999985

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase

Probab=100.00  E-value=5.1e-60  Score=461.90  Aligned_cols=419  Identities=23%  Similarity=0.339  Sum_probs=345.3

Q ss_pred             cccHHHHHHHHHHhcCCcceEEecCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcEE
Q 014065            3 GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATA   82 (431)
Q Consensus         3 ~~tl~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~   82 (431)
                      ..|+.++++++++.+|+++|+++.+ +++||+||.++++++|.+|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus        22 ~~~l~~~~~~~a~~~p~~~a~~~~~-~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~  100 (527)
T TIGR02275        22 DKPLTDILRDQAARYPDAIAIICGN-RQWSYRELDQRADNLAAGLTKLGIGQGDTAVVQLPNIAEFYIVFFALLKLGIAP  100 (527)
T ss_pred             CCcHHHHHHHHHHHCCCceEEEeCC-ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHcCeEE
Confidence            4579999999999999999998654 799999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHhcCCceEEEecCCchh-----HHHHHHHhcCcccccccccccc-hhhhhhhccccccccccccC
Q 014065           83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGNA-----AAQAAASKLNISHATATLLDAD-SELTLSLAHSESDTNAISKL  156 (431)
Q Consensus        83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  156 (431)
                      +++++..+.+++.++++.++++.++++.....     ...................... .......... . .......
T Consensus       101 v~~~~~~~~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~  178 (527)
T TIGR02275       101 VLALFSHRKSELTAYAQQIEPALYIIDRAHSLFDYDAFARQLQSKLPTLRNIIVAGQTRVEAELFLWLES-P-AEPVKFP  178 (527)
T ss_pred             eccccccCHHHHHHHHHhcCCcEEEEcCcccccchHHHHHHHHhhCCcceEEEEecCCCCcchhhHHhhC-c-CccccCC
Confidence            99999999999999999999999999876321     1111111111111111111000 0000000000 0 0011122


Q ss_pred             CCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHHHHHH-HHHHHHhcCCEEEeCC
Q 014065          157 TNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLA-GLLSSFAAGAAVTLPA  235 (431)
Q Consensus       157 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~l~~G~~~~~~~  235 (431)
                      ...++++++++|||||||.||+|.++|.++..++........+..+++++..+|++|.+++.. .++.++..|+++++.+
T Consensus       179 ~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~P~~h~~~~~~~~~~~~l~~G~~~v~~~  258 (527)
T TIGR02275       179 PTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICWLTQQTRYLCALPAAHNYPLSSPGALGVFYAGGCVVLAP  258 (527)
T ss_pred             CCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCCEEEECCChHhhhhhhHHHHHHHHhcCCeEEECC
Confidence            446789999999999999999999999999988888888888999999999999999998875 4788899999999976


Q ss_pred             CCCCChhhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHhCCceecccCccc
Q 014065          236 AGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTE  315 (431)
Q Consensus       236 ~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~i~~~yg~tE  315 (431)
                        .+++..+++.++++++|++.++|.+++.+++..... ..+++++|.+++||+++++++.+++.+.++.++++.||+||
T Consensus       259 --~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~-~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~YG~tE  335 (527)
T TIGR02275       259 --DPSPTDCFPLIERHKVTVTALVPPAVALWMQAASKS-RYDLSSLKLLQVGGAKFSEAAARRVPAVFGCQLQQVFGMAE  335 (527)
T ss_pred             --CCCHHHHHHHHHHhCCeEEEecHHHHHHHHhCcccc-CCCccceEEEEEcCCCCCHHHHHHHHHHhCCeEEeeeccCc
Confidence              678999999999999999999999999988776543 34578999999999999999999999999999999999999


Q ss_pred             ccCcccCCCCCCCCCCCCCCccccc--cceEEEECCCCCcCCCCceeeEEEeCCccccccccCcchhhhcc-cCCceecC
Q 014065          316 ATHLMSSNPLPEDGPHKPGSVGRPV--GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAF-LFGWFHTG  392 (431)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~G~~~--~~~~~i~d~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TG  392 (431)
                      ++......  ........+++|+|+  +.+++++|++|++++.|+.|||+++|+.++.||+++++.+...+ .+|||+||
T Consensus       336 ~~~~~~~~--~~~~~~~~~~~G~~~~~~~~v~i~d~~g~~~~~g~~Gei~v~g~~~~~gY~~~~~~~~~~~~~dg~~~TG  413 (527)
T TIGR02275       336 GLVNYTRL--DDPAEIIFTTQGRPMSPDDEVRVVDDHGNPVAPGETGMLLTRGPYTFRGYYKAPEHNAAAFDAEGFYYTG  413 (527)
T ss_pred             cCccccCC--CCccccccccCCCCCCCCceEEEECCCCCCCCCCCceEEEecCCccchhhcCChhHhHhhcCcCCCEEcC
Confidence            65433221  111223456899998  48899999999999999999999999999999999999888877 46999999


Q ss_pred             ceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          393 DIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       393 D~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      |+|+++++|++++.||.+|+|+++|++|+|.|||.+.
T Consensus       414 Dl~~~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l  450 (527)
T TIGR02275       414 DLVRLTPEGYIVVVGRAKDQINRGGEKIAAEEIENLL  450 (527)
T ss_pred             ceEEEcCCccEEEEecccceeecCCEEECHHHHHHHH
Confidence            9999999999999999999999999999999999863

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=4.7e-60  Score=466.85  Aligned_cols=420  Identities=29%  Similarity=0.447  Sum_probs=347.4

Q ss_pred             cccHHHHHHHHHHhcCCcceEEecCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcEE
Q 014065            3 GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATA   82 (431)
Q Consensus         3 ~~tl~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~   82 (431)
                      .+|+.+++++.++++|+++|+.+.+ +.+||.||+++++++|+.|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus        31 ~~~l~~~~~~~~~~~p~~~a~~~~~-~~~Ty~ql~~~~~~~A~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~  109 (573)
T PRK05605         31 DTTLVDLYDNAVARFGDRPALDFFG-ATTTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYAVLRLGAVV  109 (573)
T ss_pred             cCCHHHHHHHHHHHCCCCeEEEeCC-CcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEE
Confidence            3589999999999999999999865 699999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCccccccccccc---c-----------------------
Q 014065           83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDA---D-----------------------  136 (431)
Q Consensus        83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-----------------------  136 (431)
                      +|++|.++.+++.++++.++++++|+++................... .....   .                       
T Consensus       110 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (573)
T PRK05605        110 VEHNPLYTAHELEHPFEDHGARVAIVWDKVAPTVERLRRTTPLETIV-SVNMIAAMPLLQRLALRLPIPALRKARAALTG  188 (573)
T ss_pred             eecCcCCCHHHHHHHHhccCCcEEEechhhHHHHHhhhhccccceeE-eeeccccccccccccccccccccccccccccc
Confidence            99999999999999999999999999887655544433222111110 00000   0                       


Q ss_pred             ---hhhhhhhcccccc-c--cccccCCCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhc-C-CCCCeEEEe
Q 014065          137 ---SELTLSLAHSESD-T--NAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYK-L-TESDSTVIV  208 (431)
Q Consensus       137 ---~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~-~-~~~~~~~~~  208 (431)
                         ....+........ .  ..........+++++++|||||||.||+|.++|.++...+......+. + ..++++++.
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~  268 (573)
T PRK05605        189 PAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPGLGDGPERVLAA  268 (573)
T ss_pred             CCCcceeHHHHhhccccccccccCCCCCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHHHHHHHhhccccCCCCcEEEEe
Confidence               0000000000000 0  001122345789999999999999999999999999877664433322 2 347899999


Q ss_pred             cChhhHHHHHHHHHHHHhcCCEEEeCCCCCCChhhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEecc
Q 014065          209 LPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCS  288 (431)
Q Consensus       209 ~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g  288 (431)
                      +|++|.+++...+..++..|+++++.+  .+++..+++.++++++|.+.++|++++.+.+..... ...++++|.+++||
T Consensus       269 ~p~~~~~g~~~~~~~~l~~g~~~~~~~--~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~-~~~~~~lr~i~~gg  345 (573)
T PRK05605        269 LPMFHAYGLTLCLTLAVSIGGELVLLP--APDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEER-GVDLSGVRNAFSGA  345 (573)
T ss_pred             cChHHHHHHHHHHHHHHHcCCEEEEeC--CCCHHHHHHHHHHhCCEEEEchHHHHHHHHhCcccc-CCCchhccEEEECC
Confidence            999999998887888899999999877  678999999999999999999999999998765543 33478999999999


Q ss_pred             CCCcHHHHHHHHHHhCCceecccCcccccCcccCCCCCCCCCCCCCCccccc-cceEEEECCC--CCcCCCCceeeEEEe
Q 014065          289 ASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEI--GVPQEGGAKGEVCIR  365 (431)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d~~--~~~~~~~~~Gel~v~  365 (431)
                      ++++++..+.+.+.++.++++.||+||+++++..+...  ....++++|+|+ +..++|+|++  +.+++.|+.|||+++
T Consensus       346 ~~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~--~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~g~~Gel~v~  423 (573)
T PRK05605        346 MALPVSTVELWEKLTGGLLVEGYGLTETSPIIVGNPMS--DDRRPGYVGVPFPDTEVRIVDPEDPDETMPDGEEGELLVR  423 (573)
T ss_pred             CcCCHHHHHHHHHHhCCCeecccccchhchhhhcCCcc--cCCcCCccccCCCCCEEEEEcCCCCCccCCCCCeeEEEEe
Confidence            99999999999988899999999999999877665432  234567899999 7999999966  588999999999999


Q ss_pred             CCccccccccCcchhhhcccCCceecCceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          366 GPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       366 ~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      |+.++.||+++++.+...|.+|||+|||++++|++|++++.||.+|++|.+|++|+|.+||.+.
T Consensus       424 ~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~i~gR~dd~i~~~G~~v~p~eIE~~l  487 (573)
T PRK05605        424 GPQVFKGYWNRPEETAKSFLDGWFRTGDVVVMEEDGFIRIVDRIKELIITGGFNVYPAEVEEVL  487 (573)
T ss_pred             cCchhhhhcCChhHhhhcccCCCcccCCEEEEcCCCcEEEEeccccceeeCCEEECHHHHHHHH
Confidence            9999999999999998889889999999999999999999999999999999999999999863

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=6.9e-61  Score=476.93  Aligned_cols=415  Identities=24%  Similarity=0.351  Sum_probs=331.6

Q ss_pred             CcccHHHHHHHHHHhcCCcceEEecC--------CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHH
Q 014065            2 EGVTLIGLLNQVIDQFSSKRALSVSG--------KFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFL   73 (431)
Q Consensus         2 ~~~tl~~~l~~~a~~~p~~~a~~~~~--------~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~l   73 (431)
                      .+.|+.++|+++++.+|+++|+++.+        .+.+||+||+++++++|++|.+. +++||+|+++++|++++++++|
T Consensus        19 ~~~~l~~~l~~~a~~~~~~~a~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~-~~~gd~V~i~~~n~~e~~~~~l   97 (631)
T PRK07769         19 PNTNLVRHVERWAKVRGDKLAYRFLDFSTERDGVARDLTWSQFGARNRAVGARLQQV-TKPGDRVAILAPQNLDYLIAFF   97 (631)
T ss_pred             ccCCHHHHHHHHHHhCCCCeEEEEeccCCCCCCceeEeeHHHHHHHHHHHHHHHHHh-cCCCCEEEEEcCCChHHHHHHH
Confidence            34689999999999999999998632        25799999999999999999987 8999999999999999999999


Q ss_pred             HHHHhCcEEEec-CCCCC--HHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCcc--cccccccccchhhhhhhccccc
Q 014065           74 AVIRARATAAPL-NAAYT--PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNIS--HATATLLDADSELTLSLAHSES  148 (431)
Q Consensus        74 A~~~~G~~~v~l-~~~~~--~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  148 (431)
                      ||+++|++++|+ ++..+  .+++.++++.++++++|++.+..+............  ...+.. +..     ...   .
T Consensus        98 A~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~---~  168 (631)
T PRK07769         98 GALYAGRIAVPLFDPAEPGHVGRLHAVLDDCTPSAILTTTDSAEGVRKFFRARPAKERPRVIAV-DAV-----PDE---V  168 (631)
T ss_pred             HHHHcCCEEEeeCCCCccchHHHHHHHHHhCCCCEEEEChHHHHHHHHHHhhccccccceEEEc-ccc-----ccc---c
Confidence            999999999999 45554  678999999999999999887655444332221100  011101 000     000   0


Q ss_pred             cccccccCCCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcC
Q 014065          149 DTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAG  228 (431)
Q Consensus       149 ~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G  228 (431)
                       ..........++++++++|||||||.||+|.++|.++...+......+++.++++++..+|++|.+|+.. .+.++..|
T Consensus       169 -~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~gl~~-~~~~~~~G  246 (631)
T PRK07769        169 -GATWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDALEGQEGDRGVSWLPFFHDMGLIT-VLLPALLG  246 (631)
T ss_pred             -ccccCCCCCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHHHHHHcCCCCcceEEEeCCCcCchhhHH-HHHHHhhC
Confidence             0001112345789999999999999999999999999988888788888999999999999999999987 56667778


Q ss_pred             CEEEeCCCCCC--ChhhHHHHHHHhcc---eeeecchHHHHHHHhcc--cC--CCCCCCCCccEEEeccCCCcHHHHHHH
Q 014065          229 AAVTLPAAGRF--SASTFWQDMIKYNA---TWYTAVPTIHQIVLDRH--VA--KPEPVYPKLRFIRSCSASLAPVILSRL  299 (431)
Q Consensus       229 ~~~~~~~~~~~--~~~~~~~~i~~~~~---t~~~~~p~~~~~l~~~~--~~--~~~~~~~~l~~i~~~g~~~~~~~~~~~  299 (431)
                      +++++.++..+  ++..+++.+.++++   +.+..+|+++..++...  ..  ....+++++|.+++||++++++..+++
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~  326 (631)
T PRK07769        247 HYITFMSPAAFVRRPGRWIRELARKPGGTGGTFSAAPNFAFEHAAARGLPKDGEPPLDLSNVKGLLNGSEPVSPASMRKF  326 (631)
T ss_pred             CeEEEEChHHHHhCHHHHHHHHHhhccccCceEeeCCchHHHHHHhhccchhcccCcchhheeeEEeccCCCCHHHHHHH
Confidence            88887653233  88899999999886   78999999887765431  11  113457899999999999999999999


Q ss_pred             HHHh---CC---ceecccCcccccCcccCCCCCCCC------------------------CCCCCCccccc-cceEEEEC
Q 014065          300 EEAF---GA---PVLEAYAMTEATHLMSSNPLPEDG------------------------PHKPGSVGRPV-GQEIAILD  348 (431)
Q Consensus       300 ~~~~---~~---~i~~~yg~tE~~~~~~~~~~~~~~------------------------~~~~~~~G~~~-~~~~~i~d  348 (431)
                      .+.|   |+   .+++.||+||++.+++..+.....                        .....++|+|. +..++|+|
T Consensus       327 ~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~G~~~~~~~~~ivd  406 (631)
T PRK07769        327 NEAFAPYGLPPTAIKPSYGMAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVSAGKVGVSEWAVIVD  406 (631)
T ss_pred             HHHHhhcCCChhhcccccchhhheeEEeccCCCCCceEEEEcHHHHhCCCeEecCCCCCCceeEEeCCCcCCCcEEEEEc
Confidence            9987   33   599999999998766554321100                        01124789998 79999999


Q ss_pred             -CCCCcCCCCceeeEEEeCCccccccccCcchhhhccc------------------CCceecCceEEEcCCCeEEEeccc
Q 014065          349 -EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFL------------------FGWFHTGDIGYFDSDGYLHLVGRI  409 (431)
Q Consensus       349 -~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~------------------~g~~~TGD~~~~~~~g~l~~~gR~  409 (431)
                       ++|++++.|+.|||+++||+++.||+++++.+++.|.                  +|||+|||+|+++ ||+|+|+||.
T Consensus       407 ~~~g~~~~~ge~GEl~v~gp~v~~GY~~~~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~~-dG~l~i~GR~  485 (631)
T PRK07769        407 PETASELPDGQIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDALWVRTGDYGVYF-DGELYITGRV  485 (631)
T ss_pred             CCCCcCCCCCCEEEEEecCCCccccccCChhHHHHHHhhhcccccccccccCcccCCCeeeccccccEE-CCEEEEEccc
Confidence             5699999999999999999999999999999888774                  3899999999995 9999999999


Q ss_pred             ccceecCCeeccccceeccc
Q 014065          410 KELINRGGNLHESISLFLAK  429 (431)
Q Consensus       410 ~d~i~~~G~~i~~~~iE~a~  429 (431)
                      ||+||++|++|+|.|||.+.
T Consensus       486 ~d~Ik~~G~~V~p~eIE~~l  505 (631)
T PRK07769        486 KDLVIIDGRNHYPQDLEYTA  505 (631)
T ss_pred             ccEEEECCeeeCHHHHHHHH
Confidence            99999999999999999753

>PRK07638 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.2e-60  Score=460.34  Aligned_cols=401  Identities=21%  Similarity=0.264  Sum_probs=339.9

Q ss_pred             ccHHHHHHHHHHhcCCcceEEecCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcEEE
Q 014065            4 VTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAA   83 (431)
Q Consensus         4 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v   83 (431)
                      |++.+.|.++|+++|+++|+++.+ .++||.||.++++++|++|.+.|. +||+|+++++|+++++++++||+++|++++
T Consensus         1 ~~~~~~~~~~a~~~p~~~a~~~~~-~~~Ty~~l~~~~~~~a~~L~~~~~-~~~~v~i~~~~~~~~~~~~la~~~~G~~~v   78 (487)
T PRK07638          1 MGITKEYKKHASLQPNKIAIKEND-RVLTYKDWFESVCKVANWLNEKES-KNKTIAILLENRIEFLQLFAGAAMAGWTCV   78 (487)
T ss_pred             CChHHHHHHHHHhCCCCeEEecCC-cEeeHHHHHHHHHHHHHHHHHhCC-CCCEEEEEcCCCHHHHHHHHHHHHcCeEEE
Confidence            578999999999999999998755 699999999999999999999984 899999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCcccccccccccchhhhhhhccccccccccccCCCCCCCe
Q 014065           84 PLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDV  163 (431)
Q Consensus        84 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (431)
                      |+++.++.+++.++++.++++.++++......+...    .  ...+.....  ......    . ...........+++
T Consensus        79 ~l~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~----~--~~~~~~~~~--~~~~~~----~-~~~~~~~~~~~~~~  145 (487)
T PRK07638         79 PLDIKWKQDELKERLAISNADMIVTERYKLNDLPDE----E--GRVIEIDEW--KRMIEK----Y-LPTYAPIENVQNAP  145 (487)
T ss_pred             ecCccCCHHHHHHHHHhCCCCEEEEecccccchhhc----c--ceEEEehhh--hhhhhh----c-cccccccccCCCCc
Confidence            999999999999999999999999998654333210    0  001111000  000000    0 01111122335678


Q ss_pred             EEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCCCCCCChhh
Q 014065          164 ALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSAST  243 (431)
Q Consensus       164 ~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~  243 (431)
                      ++++|||||||.||+|.++|.+++.++......+++.++|+++...|++|..++.. ++.++..|+++++.+  .+++..
T Consensus       146 a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~l~~-~~~~l~~g~~~~~~~--~~~~~~  222 (487)
T PRK07638        146 FYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVHDFHMKREDSVLIAGTLVHSLFLYG-AISTLYVGQTVHLMR--KFIPNQ  222 (487)
T ss_pred             EEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCcCCCCEEEEeecchHHHHHHH-HHHHHccCcEEEEcC--CCCHHH
Confidence            99999999999999999999999988888888888999999999999999887654 888999999999987  689999


Q ss_pred             HHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHh-CCceecccCcccccCcccC
Q 014065          244 FWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVLEAYAMTEATHLMSS  322 (431)
Q Consensus       244 ~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~-~~~i~~~yg~tE~~~~~~~  322 (431)
                      +++.++++++|++.++|++++.+.+...    . ..+.+.++++|++++++..+++.+.+ ++++++.||+||++.++..
T Consensus       223 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~----~-~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~  297 (487)
T PRK07638        223 VLDKLETENISVMYTVPTMLESLYKENR----V-IENKMKIISSGAKWEAEAKEKIKNIFPYAKLYEFYGASELSFVTAL  297 (487)
T ss_pred             HHHHHHHcCCeEEEeCcHHHHHHHhCcC----c-CCceeEEEEcCCCCCHHHHHHHHHHcCCCeEEEEecCCccCceEEe
Confidence            9999999999999999999999987622    1 34566678899999999999999998 7899999999999977655


Q ss_pred             CCCCCCCCCCCCCccccc-cceEEEECCCCCcCCCCceeeEEEeCCccccccccCcchhhhcccCCceecCceEEEcCCC
Q 014065          323 NPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDG  401 (431)
Q Consensus       323 ~~~~~~~~~~~~~~G~~~-~~~~~i~d~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g  401 (431)
                      ..  ........++|+|+ +.+++|+|++|.+++.|+.|||+++|+.++.||+++++.+.+.+.+|||+|||++++|++|
T Consensus       298 ~~--~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~d~~g  375 (487)
T PRK07638        298 VD--EESERRPNSVGRPFHNVQVRICNEAGEEVQKGEIGTVYVKSPQFFMGYIIGGVLARELNADGWMTVRDVGYEDEEG  375 (487)
T ss_pred             cc--cccCCCCCCCCcccCCcEEEEECCCCCCCCCCCCeEEEEecccceeeecCCHHHHhhhccCCcEecCccEeEcCCC
Confidence            43  22345677999999 8999999999999999999999999999999999999888777788999999999999999


Q ss_pred             eEEEecccccceecCCeeccccceeccc
Q 014065          402 YLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       402 ~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      ++++.||.+|+||++|.+|+|.|||.+.
T Consensus       376 ~l~i~GR~~d~i~~~G~~v~~~eiE~~l  403 (487)
T PRK07638        376 FIYIVGREKNMILFGGINIFPEEIESVL  403 (487)
T ss_pred             eEEEEecCCCeEEeCCEEECHHHHHHHH
Confidence            9999999999999999999999999863

>PRK07514 malonyl-CoA synthase; Validated

Probab=100.00  E-value=7.6e-60  Score=459.08  Aligned_cols=415  Identities=30%  Similarity=0.440  Sum_probs=351.3

Q ss_pred             cccHHHHHHHHHHhcCCcceEEecCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcEE
Q 014065            3 GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATA   82 (431)
Q Consensus         3 ~~tl~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~   82 (431)
                      +.+|.+.+.+++ .+|++.|+...+++.+||.||.++++++|+.|++.|+++||+|+++++|+++++++++||+++|+++
T Consensus         2 ~~~l~~~~~~~~-~~~~~~a~~~~~~~~~Ty~eL~~~~~~la~~L~~~g~~~gd~v~i~~~~~~e~~v~~la~~~~G~~~   80 (504)
T PRK07514          2 NNNLFDALRAAF-ADRDAPFIETPDGLRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLATLRAGAVF   80 (504)
T ss_pred             CccHHHHHHHHh-hCCCCeEEEeCCCCEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEE
Confidence            678999999999 9999999988677899999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCcccccccccccchhhhhhhccccccccccccCCCCCCC
Q 014065           83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSD  162 (431)
Q Consensus        83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (431)
                      +|+++..+.+++..+++.++++++++++...+............. ...+... ....+..... .............++
T Consensus        81 v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~  157 (504)
T PRK07514         81 LPLNTAYTLAELDYFIGDAEPALVVCDPANFAWLSKIAAAAGAPH-VETLDAD-GTGSLLEAAA-AAPDDFETVPRGADD  157 (504)
T ss_pred             EECCCCCCHHHHHHHHHhCCCcEEEEccchhHHHHHhhhccCCce-EEEecCC-CcccHHHhhh-hcCcccCcccCCCCC
Confidence            999999999999999999999999999887665554433322211 1111110 0000100000 011111223456789


Q ss_pred             eEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCCCCCCChh
Q 014065          163 VALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSAS  242 (431)
Q Consensus       163 ~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~  242 (431)
                      +++++|||||||.||+|.++|.++...+......+++.+++++++.+|++|..++...++.++..|+++++.+  ..++.
T Consensus       158 ~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~--~~~~~  235 (504)
T PRK07514        158 LAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYWRFTPDDVLIHALPIFHTHGLFVATNVALLAGASMIFLP--KFDPD  235 (504)
T ss_pred             eEEEEECCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCccEEEEecchHHHHHHHHHHHHHHhcCcEEEECC--CCCHH
Confidence            9999999999999999999999999988888888889999999999999999999888889999999999987  67899


Q ss_pred             hHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHhCCceecccCcccccCcccC
Q 014065          243 TFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSS  322 (431)
Q Consensus       243 ~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~  322 (431)
                      .+++.+  .++|++..+|.++..+++..... ...++++|.+++||+++++++.+.+.+.++.++++.||+||++.....
T Consensus       236 ~~~~~i--~~~t~~~~~P~~~~~l~~~~~~~-~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~  312 (504)
T PRK07514        236 AVLALM--PRATVMMGVPTFYTRLLQEPRLT-REAAAHMRLFISGSAPLLAETHREFQERTGHAILERYGMTETNMNTSN  312 (504)
T ss_pred             HHHHHH--HhheeeecHHHHHHHHHcCCCCC-cccccceeeEEecCCCCCHHHHHHHHHHhCCcceeecccccccccccC
Confidence            999999  47999999999999988765432 334789999999999999999999999999999999999999865543


Q ss_pred             CCCCCCCCCCCCCccccc-cceEEEEC-CCCCcCCCCceeeEEEeCCccccccccCcchhhhccc-CCceecCceEEEcC
Q 014065          323 NPLPEDGPHKPGSVGRPV-GQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFL-FGWFHTGDIGYFDS  399 (431)
Q Consensus       323 ~~~~~~~~~~~~~~G~~~-~~~~~i~d-~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~g~~~TGD~~~~~~  399 (431)
                      ..   .......++|.|+ +++++|+| +++++++.|+.|||+++|+.++.||+++++.+++.|. ++||+|||++++++
T Consensus       313 ~~---~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~  389 (504)
T PRK07514        313 PY---DGERRAGTVGFPLPGVSLRVTDPETGAELPPGEIGMIEVKGPNVFKGYWRMPEKTAEEFRADGFFITGDLGKIDE  389 (504)
T ss_pred             Cc---cccccCcccccCCCCcEEEEEECCCCCCCCCCCceEEEEecCCccccccCCchhhhhhcccCCCeeecceEEEcC
Confidence            22   2233457899999 89999999 7899999999999999999999999999998888885 79999999999999


Q ss_pred             CCeEEEecccccceecCCeeccccceeccc
Q 014065          400 DGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       400 ~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      +|.+++.||.+|+||++|.+|+|.+||.+.
T Consensus       390 ~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l  419 (504)
T PRK07514        390 RGYVHIVGRGKDLIISGGYNVYPKEVEGEI  419 (504)
T ss_pred             CccEEEeccccceEEeCCeEECHHHHHHHH
Confidence            999999999999999999999999999863

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase

Probab=100.00  E-value=9.6e-60  Score=461.15  Aligned_cols=420  Identities=25%  Similarity=0.400  Sum_probs=345.8

Q ss_pred             ccHHHHHHHHHHhcCCcceEEec-----CCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHh
Q 014065            4 VTLIGLLNQVIDQFSSKRALSVS-----GKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRA   78 (431)
Q Consensus         4 ~tl~~~l~~~a~~~p~~~a~~~~-----~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~   78 (431)
                      .|+.+.+++.++.+|+++|++..     +++.+||+||+++++++|++|++.|+++||+|+++++|+++++++++||+++
T Consensus        22 ~~~~~~~~~~~~~~p~~~a~~~~~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~~  101 (538)
T TIGR03208        22 RTINDHFDAAVANCPDKPALTAYRDGHGAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACARI  101 (538)
T ss_pred             CcHHHHHHHHHHHCCCceEEEeecccCCCcceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhc
Confidence            57899999999999999999852     2368999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEecCCCCCHHHHHHHHhcCCceEEEecCCchh-----HHHHHHHhcCcccccccccccchhhhhhhcc--c-cccc
Q 014065           79 RATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNA-----AAQAAASKLNISHATATLLDADSELTLSLAH--S-ESDT  150 (431)
Q Consensus        79 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~  150 (431)
                      |++++|++|..+.+++.++++.++++++++++....     ...............+.. +......+....  . ....
T Consensus       102 G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  180 (538)
T TIGR03208       102 GAVLNPLMPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLPALRQVVVI-DGDGDDSFDRVLMTPERDDT  180 (538)
T ss_pred             CEEEeccCcccCHHHHHHHHHhcCCeEEEEccccccccHHHHHHHHhccCCcceEEEEe-cCCCCcCHHHHhhccccccc
Confidence            999999999999999999999999999999876431     111111111111111111 111000010000  0 0000


Q ss_pred             cc----cccCCCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHh
Q 014065          151 NA----ISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFA  226 (431)
Q Consensus       151 ~~----~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~  226 (431)
                      ..    .......++++++++|||||||.||+|.++|.++...+......+++..++++++.+|++|..++...++.++.
T Consensus       181 ~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~  260 (538)
T TIGR03208       181 PDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERLELGGGDVILMASPMAHQTGFMYGLMMPLI  260 (538)
T ss_pred             cccccccccCCCCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHhhcCCCCCCeEEEeCCchhHHHHHHHHHHHHH
Confidence            00    11123467899999999999999999999999999988888888889999999999999999998888999999


Q ss_pred             cCCEEEeCCCCCCChhhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHhCCc
Q 014065          227 AGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAP  306 (431)
Q Consensus       227 ~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~  306 (431)
                      .|+++++.+  .+++..+++.+++++++++..+|.++..+..+.... ...++++|.+++||+++++++.+++.+.++++
T Consensus       261 ~g~~~~~~~--~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~-~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~  337 (538)
T TIGR03208       261 LNATAVLQD--IWNPARAAELIRETGVTFTMASTPFLTDLCRAVKES-GAPVPSLFTFLCAGAPIPGILVERAWELLGAL  337 (538)
T ss_pred             cCCEEEecC--ccCHHHHHHHHHHhCCeEEecCHHHHHHHHhchhcc-CCCCCcceEEEEcCCCCCHHHHHHHHHHcCCe
Confidence            999999976  779999999999999999999999999987765432 34578999999999999999999999989999


Q ss_pred             eecccCcccccCcccCCCCCCCCCCCCCCccccc-cceEEEECCCCCcCCCCceeeEEEeCCccccccccCcchhhhccc
Q 014065          307 VLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFL  385 (431)
Q Consensus       307 i~~~yg~tE~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~  385 (431)
                      +++.||+||++.+....... .......++|+|+ +++++++|+++++++.|+.|||+++|+.++.||+++++.+.. ..
T Consensus       338 ~~~~YG~tE~~~~~~~~~~~-~~~~~~~~~G~~~~g~~v~i~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~-~~  415 (538)
T TIGR03208       338 IVSAWGMTENGAVTVTEPDD-ALEKASTTDGRPLPGVEVKVIDANGAKLSQGETGRLLVRGCSNFGGYLKRPHLNST-DA  415 (538)
T ss_pred             EEeeeccCcCCCccccCccc-chhhccCcccccCCCCEEEEECCCCCCCcCCCCcEEEEecCcccccccCCcccccc-cC
Confidence            99999999998776554321 1122345789999 899999999999999999999999999999999998877643 35


Q ss_pred             CCceecCceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          386 FGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       386 ~g~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      +|||+|||+|++|++|++++.||.+|+|+++|++|+|.|||.+.
T Consensus       416 ~~~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~eIE~~l  459 (538)
T TIGR03208       416 EGWFDTGDLAFQDAEGYIRINGRSKDVIIRGGENIPVVEIENLL  459 (538)
T ss_pred             CCceeccceEEECCCCcEEEEeccCceEEECCEEECHHHHHHHH
Confidence            78999999999999999999999999999999999999999864

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.

>PRK08316 acyl-CoA synthetase; Validated

Probab=100.00  E-value=7.7e-60  Score=461.35  Aligned_cols=420  Identities=27%  Similarity=0.368  Sum_probs=356.3

Q ss_pred             cccHHHHHHHHHHhcCCcceEEecCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcEE
Q 014065            3 GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATA   82 (431)
Q Consensus         3 ~~tl~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~   82 (431)
                      ..|+.++|...++.+|+++|+.+.+ +.+||+||.+++.++|+.|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus        10 ~~~l~~~l~~~a~~~~~~~a~~~~~-~~~Ty~~l~~~~~~~a~~L~~~gi~~~~~V~l~~~~~~~~~~~~~a~~~~G~~~   88 (523)
T PRK08316         10 RQTIGDILRRSARRYPDKTALVFGD-RSWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLACARAGAVH   88 (523)
T ss_pred             CCCHHHHHHHHHHHCCCCeEEEECC-ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEE
Confidence            4579999999999999999998765 799999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCcccccccccc-----cchhhhhhhccccccccccccCC
Q 014065           83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLD-----ADSELTLSLAHSESDTNAISKLT  157 (431)
Q Consensus        83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~  157 (431)
                      +|+++..+.+++.++++.+++++++++.+....+....+.............     ......+..... ..........
T Consensus        89 v~l~~~~~~~~i~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  167 (523)
T PRK08316         89 VPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLPVDTLILSLVLGGREAPGGWLDFADWAE-AGSVAEPDVE  167 (523)
T ss_pred             EecccccCHHHHHHHHHhCCCCEEEEccchHHHHHHHhhhcCccceeeeecccccccccchhhHHHHHh-cCCCccCccC
Confidence            9999999999999999999999999998876665544332221111100000     000011110000 0011112334


Q ss_pred             CCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCCCC
Q 014065          158 NDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAG  237 (431)
Q Consensus       158 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~  237 (431)
                      ...+++++++|||||||.||+|.++|.+++.........+++.++++++..+|++|..++...++.++..|+++++.+  
T Consensus       168 ~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~~~~G~~~~~~~--  245 (523)
T PRK08316        168 LADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAGDMSADDIPLHALPLYHCAQLDVFLGPYLYVGATNVILD--  245 (523)
T ss_pred             CCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCCceEEEccCCchhhhHHHHHHHHHhcCceEEEec--
Confidence            567899999999999999999999999999888887888899999999999999999998776778899999999987  


Q ss_pred             CCChhhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHh-CCceecccCcccc
Q 014065          238 RFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVLEAYAMTEA  316 (431)
Q Consensus       238 ~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~-~~~i~~~yg~tE~  316 (431)
                      ..++..+++.++++++|++.++|.++..+.+..... ..+++++|.+++||+.++.+..+.+++.+ ++++++.||+||+
T Consensus       246 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-~~~~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~YG~tE~  324 (523)
T PRK08316        246 APDPELILRTIEAERITSFFAPPTVWISLLRHPDFD-TRDLSSLRKGYYGASIMPVEVLKELRERLPGLRFYNCYGQTEI  324 (523)
T ss_pred             CCCHHHHHHHHHHhCCeEEEeCHHHHHHHHcCcccc-cCCcccceEEEEcCCcCCHHHHHHHHHHcCCCceeeeeccccc
Confidence            568999999999999999999999999998775443 34578999999999999999999999988 7899999999999


Q ss_pred             cCcccCCCCCCCCCCCCCCccccc-cceEEEECCCCCcCCCCceeeEEEeCCccccccccCcchhhhcccCCceecCceE
Q 014065          317 THLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIG  395 (431)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~  395 (431)
                      +.+...... .+.....+++|+|+ +++++|+|++|++++.|+.|||+++|+.++.||+++++.+.+.|.++||+|||+|
T Consensus       325 ~~~~~~~~~-~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~g~~Gei~v~~~~~~~~y~~~~~~~~~~~~~~~~~TGDl~  403 (523)
T PRK08316        325 APLATVLGP-EEHLRRPGSAGRPVLNVETRVVDDDGNDVAPGEVGEIVHRSPQLMLGYWDDPEKTAEAFRGGWFHSGDLG  403 (523)
T ss_pred             CccccccCc-cccccccCCcccCCCCcEEEEEcCCCCCCCCCCcceEEEECCchhhhhcCCHHHHHHHhhCCCeeccceE
Confidence            987666542 22345568899999 8999999999999999999999999999999999999999888999999999999


Q ss_pred             EEcCCCeEEEecccccceecCCeeccccceecc
Q 014065          396 YFDSDGYLHLVGRIKELINRGGNLHESISLFLA  428 (431)
Q Consensus       396 ~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a  428 (431)
                      ++++||.+++.||.+|+||++|++|+|.+||.+
T Consensus       404 ~~~~~g~l~i~gR~~~~i~~~G~~i~~~~iE~~  436 (523)
T PRK08316        404 VMDEEGYITVVDRKKDMIKTGGENVASREVEEA  436 (523)
T ss_pred             EEcCCceEEEecccccEEEeCCeEECHHHHHHH
Confidence            999999999999999999999999999999974

>PRK06087 short chain acyl-CoA synthetase; Reviewed

Probab=100.00  E-value=9.2e-60  Score=462.42  Aligned_cols=421  Identities=26%  Similarity=0.364  Sum_probs=347.0

Q ss_pred             cccHHHHHHHHHHhcCCcceEEecCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcEE
Q 014065            3 GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATA   82 (431)
Q Consensus         3 ~~tl~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~   82 (431)
                      ..|+.++|+++++.+|+++|+++.+++++||+||+++++++|++|++.|+++||+|+++++|+++++++++||+++|+++
T Consensus        22 ~~~l~~~~~~~~~~~pd~~a~~~~~~~~~Ty~~l~~~v~~la~~l~~~G~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~  101 (547)
T PRK06087         22 DASLADYWQQTARAMPDKIAVVDNHGASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLACLKVGAVS  101 (547)
T ss_pred             CCCHHHHHHHHHHHCCCceEEEcCCCCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEE
Confidence            35799999999999999999987665799999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHhcCCceEEEecCCch-----hHHHHHHHhcCcccccccccccc---hhhhhhhccccccccccc
Q 014065           83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGN-----AAAQAAASKLNISHATATLLDAD---SELTLSLAHSESDTNAIS  154 (431)
Q Consensus        83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  154 (431)
                      +|++|.++.+++.++++.+++++++++....     +.+.............+......   ....+........ ....
T Consensus       102 v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  180 (547)
T PRK06087        102 VPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQIVGVDKLAPATSSLSLSQIIADYE-PLTT  180 (547)
T ss_pred             eccchhcCHHHHHHHHHhcCCeEEEEecccccccHHHHHHHHHhhCCCCcEEEEeCCcCCCcCccCHHHHhccCC-cccC
Confidence            9999999999999999999999999986432     22222222221111111111100   0001110000000 0011


Q ss_pred             cCCCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeC
Q 014065          155 KLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLP  234 (431)
Q Consensus       155 ~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~  234 (431)
                      ......+++++++|||||||.||+|.++|.+++.....+...+++.+++++++.+|++|.++++..++.++..|+++++.
T Consensus       181 ~~~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~g~~~~~~  260 (547)
T PRK06087        181 AITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARLNLTWQDVFMMPAPLGHATGFLHGVTAPFLIGARSVLL  260 (547)
T ss_pred             CCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeEEEecchHHHHHHHHHHHHHHhcCCEEEec
Confidence            22346789999999999999999999999999988888788888999999999999999999988899999999999998


Q ss_pred             CCCCCChhhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHhCCceecccCcc
Q 014065          235 AAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMT  314 (431)
Q Consensus       235 ~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~i~~~yg~t  314 (431)
                      +  .+++..+++.+++++++++..+|..+..+++..... ..+++++|.+++||+++++++.+.+.+. ++++++.||+|
T Consensus       261 ~--~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~-~~~~~~lr~i~~gG~~~~~~~~~~~~~~-~~~l~~~YG~T  336 (547)
T PRK06087        261 D--IFTPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQ-PADLSALRFFLCGGTTIPKKVARECQQR-GIKLLSVYGST  336 (547)
T ss_pred             C--CCCHHHHHHHHHHcCCCEEeccHHHHHHHHhccccC-CCCCCCeEEEEEcCCCCCHHHHHHHHHc-CCcEEEEeccc
Confidence            7  679999999999999999998888777777665432 3457899999999999999999988764 99999999999


Q ss_pred             cccCcccCCCCCCCCCCCCCCccccc-cceEEEECCCCCcCCCCceeeEEEeCCccccccccCcchhhhcc-cCCceecC
Q 014065          315 EATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAF-LFGWFHTG  392 (431)
Q Consensus       315 E~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TG  392 (431)
                      |++++...... ........++|+|+ ++.++++|+++.+++.|+.|||+++|+.++.||+++++.+...+ .+|||+||
T Consensus       337 E~~~~~~~~~~-~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g~~~TG  415 (547)
T PRK06087        337 ESSPHAVVNLD-DPLSRFMHTDGYAAAGVEIKVVDEARKTLPPGCEGEEASRGPNVFMGYLDEPELTARALDEEGWYYSG  415 (547)
T ss_pred             ccCCccccCCC-cchhhcCCcCCccCCCceEEEEcCCCCCCcCCCcceEEEecccccccccCCHHHHHHHhCCCCCcCcC
Confidence            99877665432 11123456789999 89999999999999999999999999999999999998887777 46999999


Q ss_pred             ceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          393 DIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       393 D~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      |++++|++|++++.||.+|+|+.+|++|+|.+||.+.
T Consensus       416 Dl~~~~~~g~l~i~GR~~d~i~~~G~~v~p~~iE~~l  452 (547)
T PRK06087        416 DLCRMDEAGYIKITGRKKDIIVRGGENISSREVEDIL  452 (547)
T ss_pred             ceEEECCCCCEEEEecchhhhhcCCEEECHHHHHHHH
Confidence            9999999999999999999999999999999999863

>PRK08180 feruloyl-CoA synthase; Reviewed

Probab=100.00  E-value=6.6e-60  Score=467.80  Aligned_cols=411  Identities=23%  Similarity=0.292  Sum_probs=324.2

Q ss_pred             ccHHHHHHHHHHhcCCcceEEecC----CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhC
Q 014065            4 VTLIGLLNQVIDQFSSKRALSVSG----KFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRAR   79 (431)
Q Consensus         4 ~tl~~~l~~~a~~~p~~~a~~~~~----~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G   79 (431)
                      .|+.+.|+++++++|+++|+++.+    .+++||+||.++++++|++|.+.|+++||+|+++++|+++++++++||+++|
T Consensus        39 ~~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G  118 (614)
T PRK08180         39 RRLTDRLVHWAQEAPDRVFLAERGADGGWRRLTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLALAAMYAG  118 (614)
T ss_pred             ccHHHHHHHHHHHCCCCceeeeccCCCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcC
Confidence            578999999999999999998642    2689999999999999999999999999999999999999999999999999


Q ss_pred             cEEEecCCCCC-----HHHHHHHHhcCCceEEEecCCc--hhHHHHHHHhcCcccccccccccc-h--hhhhhhcccccc
Q 014065           80 ATAAPLNAAYT-----PDEFEFYLSDSESKLLLTPAEG--NAAAQAAASKLNISHATATLLDAD-S--ELTLSLAHSESD  149 (431)
Q Consensus        80 ~~~v~l~~~~~-----~~~l~~~l~~~~~~~ii~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~  149 (431)
                      ++++|++|.++     .+++.++++.++++++|+++..  ...+...   .......+...... .  ...+........
T Consensus       119 av~vpl~~~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  195 (614)
T PRK08180        119 VPYAPVSPAYSLVSQDFGKLRHVLELLTPGLVFADDGAAFARALAAV---VPADVEVVAVRGAVPGRAATPFAALLATPP  195 (614)
T ss_pred             CeEeeeccccccccCCHHHHHHHHhcCCCcEEEEcCHHHHHHHHhhh---ccCCceEEEecCCCCCcccccHHHHhcccc
Confidence            99999999998     7899999999999999997542  1111111   01011111111000 0  011111100000


Q ss_pred             c--cccccCCCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCC--CCCeEEEecChhhHHHHHHHHHHHH
Q 014065          150 T--NAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLT--ESDSTVIVLPLFHVHGMLAGLLSSF  225 (431)
Q Consensus       150 ~--~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~--~~~~~~~~~p~~~~~~~~~~~~~~l  225 (431)
                      .  .........++++++++|||||||.||+|.+||.++..++......++..  .++++++.+|++|.+++...++.++
T Consensus       196 ~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~lPl~h~~g~~~~~~~~l  275 (614)
T PRK08180        196 TAAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTFPFLAEEPPVLVDWLPWNHTFGGNHNLGIVL  275 (614)
T ss_pred             ccchhhhccCCCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhccccCCCCcEEEEecchHHHhhHHHHHHHHH
Confidence            0  00111234578999999999999999999999999998887776666653  5689999999999999887788999


Q ss_pred             hcCCEEEeCCCCCCC---hhhHHHHHHHhcceeeecchHHHHHHHhcccCCC---CCCCCCccEEEeccCCCcHHHHHHH
Q 014065          226 AAGAAVTLPAAGRFS---ASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKP---EPVYPKLRFIRSCSASLAPVILSRL  299 (431)
Q Consensus       226 ~~G~~~~~~~~~~~~---~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~---~~~~~~l~~i~~~g~~~~~~~~~~~  299 (431)
                      ..|+++++.+. .++   ...+++.++++++|+++++|+++..+++......   ..+++++|.+++||+++++++.+.+
T Consensus       276 ~~G~~v~~~~~-~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~lr~v~~gGa~l~~~~~~~~  354 (614)
T PRK08180        276 YNGGTLYIDDG-KPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALERDAALRRRFFSRLKLLFYAGAALSQDVWDRL  354 (614)
T ss_pred             hcCCEEEEeCC-CccchhHHHHHHHHHHhCCcEEechHHHHHHHHHHHHhchhhhhhhccceeEEEEccCCCCHHHHHHH
Confidence            99999998652 233   3467889999999999999999999987543221   2346899999999999999999999


Q ss_pred             HHH----hC--CceecccCcccccCcccCCCCCCCCCCCCCCccccc-cceEEEECCCCCcCCCCceeeEEEeCCccccc
Q 014065          300 EEA----FG--APVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKG  372 (431)
Q Consensus       300 ~~~----~~--~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d~~~~~~~~~~~Gel~v~~~~~~~g  372 (431)
                      .+.    ++  +++++.||+||++++++....   ....++++|+|+ |++++++|++       ..|||+++|++++.|
T Consensus       355 ~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~---~~~~~~svG~p~pg~~v~i~d~~-------~~GEi~vrg~~v~~G  424 (614)
T PRK08180        355 DRVAEATCGERIRMMTGLGMTETAPSATFTTG---PLSRAGNIGLPAPGCEVKLVPVG-------GKLEVRVKGPNVTPG  424 (614)
T ss_pred             HHHHHhhcCCCceeeeeecccccCCceEeccc---ccCCCCcccCccCCcEEEEecCC-------CCcEEEEecCccchh
Confidence            875    33  679999999999876655432   234678999999 8999999853       359999999999999


Q ss_pred             cccCcchhhhccc-CCceecCceEEE----cCCCeEEEeccccccee-cCCeecc--ccceecc
Q 014065          373 YKNNPEANKSAFL-FGWFHTGDIGYF----DSDGYLHLVGRIKELIN-RGGNLHE--SISLFLA  428 (431)
Q Consensus       373 y~~~~~~~~~~~~-~g~~~TGD~~~~----~~~g~l~~~gR~~d~i~-~~G~~i~--~~~iE~a  428 (431)
                      |+++++.+++.|. +|||+|||+|++    |++|+++|.||.+|+|+ .+|++|+  |.|+|.+
T Consensus       425 Y~~~p~~t~~~~~~dgw~~TGDlg~~~~~~d~~g~l~i~GR~~d~i~~~~G~~i~~~p~Eie~~  488 (614)
T PRK08180        425 YWRAPELTAEAFDEEGYYRSGDAVRFVDPADPERGLMFDGRIAEDFKLSSGTWVSVGPLRARAV  488 (614)
T ss_pred             hcCChhHhHhhcccCCceeccceEEecCCcCCCCceEEecchhhhEEcCCCcEecchhhhHHHH
Confidence            9999999988884 799999999999    56899999999999887 6899887  5666654

>PRK06145 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.7e-59  Score=455.60  Aligned_cols=412  Identities=27%  Similarity=0.360  Sum_probs=347.8

Q ss_pred             ccHHHHHHHHHHhcCCcceEEecCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcEEE
Q 014065            4 VTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAA   83 (431)
Q Consensus         4 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v   83 (431)
                      +++.++++++++.+|+++|+.+.+ +.+||.||.++++++|.+|.+.|+++|++|+++++|+++++++++||+++|++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~a~~~~~-~~~ty~el~~~v~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v   80 (497)
T PRK06145          2 FNLSASIAFHARRTPDRAALVYRD-QEISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAASYLGAVFL   80 (497)
T ss_pred             ccHHHHHHHHHHHCCCceEEEECC-cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEE
Confidence            578899999999999999998755 6999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCcccccccccccchhhhhhhccccccccccccCCCCCCCe
Q 014065           84 PLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDV  163 (431)
Q Consensus        84 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (431)
                      |+++..+.+++.++++.++++.++++.+.......       .......... .......... ............++++
T Consensus        81 ~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~-------~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~  151 (497)
T PRK06145         81 PINYRLAADEVAYILGDAGAKLLLVDEEFDAIVAL-------ETPKIVIDAA-AQADSRRLAQ-GGLEIPPQAAVAPTDL  151 (497)
T ss_pred             ecccccCHHHHHHHHHhcCCcEEEEccchhhhhhc-------ccceEEecCc-ccchhHHHhc-cCCCCCCCCCCCccce
Confidence            99999999999999999999999998765432110       0011111110 0000000000 0001111223467899


Q ss_pred             EEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCCCCCCChhh
Q 014065          164 ALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSAST  243 (431)
Q Consensus       164 ~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~  243 (431)
                      ++++|||||||.||+|.++|.++...+......+++..+++++...|++|.+++....+.++..|+++++.+  .+++..
T Consensus       152 a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~--~~~~~~  229 (497)
T PRK06145        152 VRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIALGLTASERLLVVGPLYHVGAFDLPGIAVLWVGGTLRIHR--EFDPEA  229 (497)
T ss_pred             EEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCcEEEEecCchhHhHHHHHHHHHHhccCEEEECC--cCCHHH
Confidence            999999999999999999999998776666677789999999999999999998776788899999999977  679999


Q ss_pred             HHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHh-CCceecccCcccccCcccC
Q 014065          244 FWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVLEAYAMTEATHLMSS  322 (431)
Q Consensus       244 ~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~-~~~i~~~yg~tE~~~~~~~  322 (431)
                      +++.++++++|++.++|+++..++...... ..+++++|.+++||+++++++++.+.+.| +.++++.||+||++..++.
T Consensus       230 ~~~~i~~~~~t~~~~~P~~~~~ll~~~~~~-~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~  308 (497)
T PRK06145        230 VLAAIERHRLTCAWMAPVMLSRVLTVPDRD-RFDLDSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETCSGDTL  308 (497)
T ss_pred             HHHHHHHhCCeEEEehHHHHHHHHcCCCcc-ccccccceEEEecCCCCCHHHHHHHHHHcCCCceEEeecCcccCCccee
Confidence            999999999999999999999998765432 34468999999999999999999999988 6889999999999986654


Q ss_pred             CCCCCCCCCCCCCccccc-cceEEEECCCCCcCCCCceeeEEEeCCccccccccCcchhhhcccCCceecCceEEEcCCC
Q 014065          323 NPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDG  401 (431)
Q Consensus       323 ~~~~~~~~~~~~~~G~~~-~~~~~i~d~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g  401 (431)
                      .... ......+++|+|+ +++++++|+++.+++.|+.|||+++|++++.||+++++.+++.|.++||+|||++++|++|
T Consensus       309 ~~~~-~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~~~Gel~v~g~~~~~Gy~~~~~~~~~~~~~~~~~TGDl~~~~~~g  387 (497)
T PRK06145        309 MEAG-REIEKIGSTGRALAHVEIRIADGAGRWLPPNMKGEICMRGPKVTKGYWKDPEKTAEAFYGDWFRSGDVGYLDEEG  387 (497)
T ss_pred             ccCc-cccccCCCcccCCCCceEEEECCCCCCCCCCCceEEEEECcchhhhhcCChHHHHHHHhCCCeeccceEEEcCCC
Confidence            4321 1234567899999 8999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEecccccceecCCeeccccceeccc
Q 014065          402 YLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       402 ~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      +++++||.+|+||.+|++++|.+||.+.
T Consensus       388 ~l~~~GR~~~~i~~~G~~v~~~~IE~~l  415 (497)
T PRK06145        388 FLYLTDRKKDMIISGGENIASSEVERVI  415 (497)
T ss_pred             cEEEeccccceEEeCCeEECHHHHHHHH
Confidence            9999999999999999999999999863

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=9.8e-60  Score=461.25  Aligned_cols=421  Identities=28%  Similarity=0.357  Sum_probs=350.5

Q ss_pred             cccHHHHHHHHHHhcCCcceEEecCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcEE
Q 014065            3 GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATA   82 (431)
Q Consensus         3 ~~tl~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~   82 (431)
                      .+|+.+.+...++.+|+++|+.+.+ +.+||.||.++++++|.+|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus        16 ~~n~~~~~~~~a~~~~~~~a~~~~~-~~~ty~~l~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~~a~~~~G~~~   94 (542)
T PRK07786         16 RQNWVNQLARHALMQPDAPALRFLG-NTTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAIA   94 (542)
T ss_pred             ccCHHHHHHHHHHHCCCCeEEEeCC-CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEE
Confidence            3689999999999999999998755 699999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCcccccccccccc--hhhhhhhccccccccccccCCCCC
Q 014065           83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDAD--SELTLSLAHSESDTNAISKLTNDP  160 (431)
Q Consensus        83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  160 (431)
                      +|+++..+.+++.++++.+++++++++....+...............+...+..  ....+....... ...........
T Consensus        95 vpl~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  173 (542)
T PRK07786         95 VPVNFRLTPPEIAFLVSDCGAHVVVTEAALAPVATAVRDIVPLLSTVVVAGGSSDDSVLGYEDLLAEA-GPAHAPVDIPN  173 (542)
T ss_pred             EEcCccCCHHHHHHHHHhCCCcEEEEccchHHHHHHhhhccCccceEEEecCCCcccccCHHHHhhcc-CCCCCCCCCCC
Confidence            999999999999999999999999999876555443332211111111111100  001111100000 01111223456


Q ss_pred             CCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcC-CCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCCCCCC
Q 014065          161 SDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKL-TESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRF  239 (431)
Q Consensus       161 ~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~  239 (431)
                      +++++++|||||||.||+|.++|.++...+......+++ ..++++++..|++|.+|+.. ++.++..|+++++.+...+
T Consensus       174 ~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~~~~  252 (542)
T PRK07786        174 DSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTNGADINSDVGFVGVPLFHIAGIGS-MLPGLLLGAPTVIYPLGAF  252 (542)
T ss_pred             CCeEEEEeCCCCCccchhhhhhHHHHHHHHHHHHHhcCCCCCCceEEEecchHHHHHHHH-HHHHHHccCEEEEccCCCc
Confidence            789999999999999999999999999888777777776 67889999999999999855 8899999999998764467


Q ss_pred             ChhhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHh-CCceecccCcccccC
Q 014065          240 SASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVLEAYAMTEATH  318 (431)
Q Consensus       240 ~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~-~~~i~~~yg~tE~~~  318 (431)
                      ++..+++.++++++|.++++|+++..++........  ..++|.+++||++++++.++.+.+.+ +.++++.||+||++.
T Consensus       253 ~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~--~~~lr~i~~gg~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~  330 (542)
T PRK07786        253 DPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQARPR--DLALRVLSWGAAPASDTLLRQMAATFPEAQILAAFGQTEMSP  330 (542)
T ss_pred             CHHHHHHHHHHcCCeEEEehHHHHHHHHhCcccCcc--CcceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeeccccccc
Confidence            999999999999999999999999999876543221  23789999999999999999999998 789999999999987


Q ss_pred             cccCCCCCCCCCCCCCCccccc-cceEEEECCCCCcCCCCceeeEEEeCCccccccccCcchhhhcccCCceecCceEEE
Q 014065          319 LMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYF  397 (431)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~  397 (431)
                      +.+... .+......+++|+|+ ++.++|+|+++++++.|+.|||+++|+.++.||+++++.++..|.+|||+|||++++
T Consensus       331 ~~~~~~-~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~f~~~~~~TGDl~~~  409 (542)
T PRK07786        331 VTCMLL-GEDAIRKLGSVGKVIPTVAARVVDENMNDVPVGEVGEIVYRAPTLMSGYWNNPEATAEAFAGGWFHSGDLVRQ  409 (542)
T ss_pred             ceEecC-cccccccCCCccccCCCceEEEECCCCCCCcCCCceEEEEEChhhhhhhcCCHHHHHHHhhCCcccccceEEE
Confidence            655433 222345567899999 799999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCeEEEecccccceecCCeeccccceeccc
Q 014065          398 DSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       398 ~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      +++|.+++.||.+|+||++|.+++|.|||.+.
T Consensus       410 ~~~g~~~i~GR~~d~i~~~G~~v~~~eiE~~l  441 (542)
T PRK07786        410 DEEGYVWVVDRKKDMIISGGENIYCAEVENVL  441 (542)
T ss_pred             cCCceEEEEecccceEEeCCEEECHHHHHHHH
Confidence            99999999999999999999999999999863

>PRK08315 AMP-binding domain protein; Validated

Probab=100.00  E-value=1.7e-59  Score=462.09  Aligned_cols=426  Identities=29%  Similarity=0.392  Sum_probs=350.6

Q ss_pred             CcccHHHHHHHHHHhcCCcceEEec-CCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCc
Q 014065            2 EGVTLIGLLNQVIDQFSSKRALSVS-GKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARA   80 (431)
Q Consensus         2 ~~~tl~~~l~~~a~~~p~~~a~~~~-~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~   80 (431)
                      .+.|+.++|.+.++.+|+++|+++. +++++||+||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++|+
T Consensus        14 ~~~~l~~~l~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~   93 (559)
T PRK08315         14 LEQTIGQLLDRTAARYPDREALVYRDQGLRWTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQFATAKIGA   93 (559)
T ss_pred             hhccHHHHHHHHHHHCCCCeEEEEcCCCeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHhCe
Confidence            4568999999999999999999874 346899999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHHHHhcCCceEEEecCCchh-----HHHHHHHhcC-------------cccccccccccc--hhhh
Q 014065           81 TAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNA-----AAQAAASKLN-------------ISHATATLLDAD--SELT  140 (431)
Q Consensus        81 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~-----~~~~~~~~~~-------------~~~~~~~~~~~~--~~~~  140 (431)
                      +++|++|..+.+++..+++.++++.++++.....     ...+......             .....+......  ....
T Consensus        94 ~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (559)
T PRK08315         94 ILVTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPGQLQSARLPELRRVIFLGDEKHPGMLN  173 (559)
T ss_pred             EEEecCccCCHHHHHHHHHhcCCCEEEEeccccccchHHHHHHhhhhhhcccccccccccCCCceeEEeecccCCccccc
Confidence            9999999999999999999999999999876421     1111111110             000000000000  0000


Q ss_pred             hhhccc-----cccccccccCCCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHH
Q 014065          141 LSLAHS-----ESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVH  215 (431)
Q Consensus       141 ~~~~~~-----~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  215 (431)
                      +.....     ..............+++++++|||||||.||+|.++|.++..++......+++.++++++...|++|..
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~  253 (559)
T PRK08315        174 FDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEAMKLTEEDRLCIPVPLYHCF  253 (559)
T ss_pred             HHHHHhhccccccccccchhccCCCCCcEEEEEcCCCCCCcceEEeeHHHHHHHHHHHHHhcCCCCCceEEEecCcHHHH
Confidence            000000     000001112234568899999999999999999999999998888888888999999999999999999


Q ss_pred             HHHHHHHHHHhcCCEEEeCCCCCCChhhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHH
Q 014065          216 GMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVI  295 (431)
Q Consensus       216 ~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~  295 (431)
                      +++..++.++..|+++++... .+++..+++.++++++|++.++|+++..++...... ...++++|.++++|+++++++
T Consensus       254 g~~~~~~~~l~~g~~~~~~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~~~~~-~~~~~~lr~~~~~G~~~~~~~  331 (559)
T PRK08315        254 GMVLGNLACVTHGATMVYPGE-GFDPLATLAAVEEERCTALYGVPTMFIAELDHPDFA-RFDLSSLRTGIMAGSPCPIEV  331 (559)
T ss_pred             HHHHHHHHHHhccceEEEecC-CCCHHHHHHHHHHcCCeEEecchHHHHHHHhCcccC-CCCchhhheeEecCCCCCHHH
Confidence            998889999999999986443 678999999999999999999999998887765432 335789999999999999999


Q ss_pred             HHHHHHHhCC-ceecccCcccccCcccCCCCCCCCCCCCCCccccc-cceEEEECCC-CCcCCCCceeeEEEeCCccccc
Q 014065          296 LSRLEEAFGA-PVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEI-GVPQEGGAKGEVCIRGPNVTKG  372 (431)
Q Consensus       296 ~~~~~~~~~~-~i~~~yg~tE~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d~~-~~~~~~~~~Gel~v~~~~~~~g  372 (431)
                      .+.+.+.++. ++++.||+||++.+++.............++|+|+ +++++++|++ +++++.|+.|||+++|++++.|
T Consensus       332 ~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~g~~~~~g  411 (559)
T PRK08315        332 MKRVIDKMHMSEVTIAYGMTETSPVSTQTRTDDPLEKRVTTVGRALPHLEVKIVDPETGETVPRGEQGELCTRGYSVMKG  411 (559)
T ss_pred             HHHHHHHcCCcceeEEEcccccccceeecCcccchhhccCCCCccCCCcEEEEEcCccCCcCCCCCceEEEEECchhhhh
Confidence            9999998865 49999999999987665543333334568999999 8999999977 9999999999999999999999


Q ss_pred             cccCcchhhhcc-cCCceecCceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          373 YKNNPEANKSAF-LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       373 y~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      |+++++.++..+ .++||+|||++++++||.++++||.+|+||++|.+++|.|||.+.
T Consensus       412 y~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~d~~i~~~G~~v~~~eIE~~l  469 (559)
T PRK08315        412 YWNDPEKTAEAIDADGWMHTGDLAVMDEEGYVNIVGRIKDMIIRGGENIYPREIEEFL  469 (559)
T ss_pred             hcCChhHHhhcCCCCCCEEccceEEEcCCceEEEEeeccceEEECCEEEcHHHHHHHH
Confidence            999998888777 678999999999999999999999999999999999999999863

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated

Probab=100.00  E-value=2.7e-59  Score=456.39  Aligned_cols=421  Identities=28%  Similarity=0.410  Sum_probs=344.6

Q ss_pred             cccHHHHHHHHHHhcCCcceEEecC----CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHh
Q 014065            3 GVTLIGLLNQVIDQFSSKRALSVSG----KFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRA   78 (431)
Q Consensus         3 ~~tl~~~l~~~a~~~p~~~a~~~~~----~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~   78 (431)
                      ..|+.++|++.|+++|+++|+++.+    .+++||.||.++++++|++|.+.|+++||+|+++++|+++++++++||+++
T Consensus         6 ~~~l~~~~~~~a~~~p~~~a~~~~~~~~~~~~~ty~~l~~~v~~la~~L~~~g~~~~~~v~i~~~n~~~~~~~~la~~~~   85 (517)
T PRK08008          6 GQHLRQMWDDLADVYGHKTALIFESSGGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAKI   85 (517)
T ss_pred             cccHHHHHHHHHHHCCCceEEEcccCCCccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Confidence            4689999999999999999998754    368999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCcccccccccccc-----hhhhhhhcccccccccc
Q 014065           79 RATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDAD-----SELTLSLAHSESDTNAI  153 (431)
Q Consensus        79 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~  153 (431)
                      |+++++++|..+.+++.++++.++++.++++.+..+...+...........+......     ....+............
T Consensus        86 G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (517)
T PRK08008         86 GAIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLRHICLTRVALPADDGVSSFTQLKAQQPATLC  165 (517)
T ss_pred             CeEEEEcCcccCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhccccCcEEEEecCCCcccccccCHHHHhccCCcccc
Confidence            9999999999999999999999999999999887666655543322111111111100     00011110000000011


Q ss_pred             ccCCCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEe
Q 014065          154 SKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTL  233 (431)
Q Consensus       154 ~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~  233 (431)
                      ......++++++++|||||||.||+|.++|.++............+..++++++.+|++|..++...++.++..|+++++
T Consensus       166 ~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~  245 (517)
T PRK08008        166 YAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTAAMAAFSAGATFVL  245 (517)
T ss_pred             ccCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHhhhcCCCCCCeEEEecCcHHHHHHHHHHHHHHhcCcEEEE
Confidence            12234568999999999999999999999999986554444445678899999999999998888878999999999999


Q ss_pred             CCCCCCChhhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHhCCceecccCc
Q 014065          234 PAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAM  313 (431)
Q Consensus       234 ~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~i~~~yg~  313 (431)
                      .+  .+++..+++.++++++|++.++|++++.+........ ....+++.+.++ .+++++....+.+.+++++++.||+
T Consensus       246 ~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~YG~  321 (517)
T PRK08008        246 LE--KYSARAFWGQVCKYRATITECIPMMIRTLMVQPPSAN-DRQHCLREVMFY-LNLSDQEKDAFEERFGVRLLTSYGM  321 (517)
T ss_pred             cc--ccCHHHHHHHHHHcCCcEEechHHHHHHHHhCCCccc-cccccceeeEEe-cCCCHHHHHHHHHHhCCeEEeeccc
Confidence            87  6789999999999999999999999999876543322 224577877765 4789999999999999999999999


Q ss_pred             ccccCcccCCCCCCCCCCCCCCccccc-cceEEEECCCCCcCCCCceeeEEEeC---CccccccccCcchhhhccc-CCc
Q 014065          314 TEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRG---PNVTKGYKNNPEANKSAFL-FGW  388 (431)
Q Consensus       314 tE~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d~~~~~~~~~~~Gel~v~~---~~~~~gy~~~~~~~~~~~~-~g~  388 (431)
                      ||++..+.....  .......++|+|+ +++++++|+++++++.|+.|||+++|   ++++.||+++++.+.+.+. +||
T Consensus       322 tE~~~~~~~~~~--~~~~~~~~~G~~~~g~~~~i~d~~~~~~~~g~~Gel~v~g~~~~~~~~gy~~~~~~~~~~~~~~g~  399 (517)
T PRK08008        322 TETIVGIIGDRP--GDKRRWPSIGRPGFCYEAEIRDDHNRPLPAGEIGEICIKGVPGKTIFKEYYLDPKATAKVLEADGW  399 (517)
T ss_pred             cccccccccCCc--cccccCCccccCCCCcEEEEECCCCCCCCCCCcceEEEeCCCCcchhhhHhCChHHHhhcccCCCC
Confidence            999876654432  2234567899998 89999999999999999999999998   6899999999999888874 799


Q ss_pred             eecCceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          389 FHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       389 ~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      |+|||+|++|++|++++.||.+|+||.+|++|+|.+||.+.
T Consensus       400 ~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~iE~~l  440 (517)
T PRK08008        400 LHTGDTGYVDEEGFFYFVDRRCNMIKRGGENVSCVELENII  440 (517)
T ss_pred             eeccceEEECCCCcEEEeecccceEEeCCEEECHHHHHHHH
Confidence            99999999999999999999999999999999999999863

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

Probab=100.00  E-value=3.2e-60  Score=477.57  Aligned_cols=413  Identities=23%  Similarity=0.328  Sum_probs=329.4

Q ss_pred             cccHHHHHHHHHHhcCC-cceEEecCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcE
Q 014065            3 GVTLIGLLNQVIDQFSS-KRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARAT   81 (431)
Q Consensus         3 ~~tl~~~l~~~a~~~p~-~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~   81 (431)
                      ..|+.+.|++.++++|+ +.|+...+++++||+||.++++++|++|.+. +++||+|+++++|++++++++|||+++|++
T Consensus       203 ~~t~~~~l~~~~~~~p~~~~a~~~~~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~Val~~~n~~e~~~~~lA~~~~G~v  281 (718)
T PRK08043        203 RETLYEALLSAQYRYGAGKPCIEDVNFTPDSYRKLLKKTLFVGRILEKY-SVEGERIGLMLPNATISAAVIFGASLRRRI  281 (718)
T ss_pred             CCCHHHHHHHHHHHhCCCCcceEcCCCCcccHHHHHHHHHHHHHHHHHh-cCCCceEEEEcCCcHHHHHHHHHHHHcCCc
Confidence            46899999999999998 5777643347899999999999999999987 599999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHHHHhcCCceEEEecCCchhHHH--HHHHhcCcccccccccccchhhhhhh---ccccccccccccC
Q 014065           82 AAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQ--AAASKLNISHATATLLDADSELTLSL---AHSESDTNAISKL  156 (431)
Q Consensus        82 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  156 (431)
                      ++|+++.++.+++.++++.++++++|++.+..+...  ......... ..+...+.........   .............
T Consensus       282 ~vpl~~~~~~~~l~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (718)
T PRK08043        282 PAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLPEQLTQV-RWVYLEDLKDDVTTADKLWIFAHLLMPRLAQV  360 (718)
T ss_pred             ccccccCcCHHHHHHHHHHcCCcEEEEcHHHHhhccCCChhhhhccc-cEEEhhhhhhhcchhHHHHHHHHHhCCccccC
Confidence            999999999999999999999999999876433210  001000000 0010111000000000   0000000001112


Q ss_pred             CCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCCC
Q 014065          157 TNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAA  236 (431)
Q Consensus       157 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~  236 (431)
                      ...++++++++|||||||.||+|.++|.++...+......+++.++|++++.+|++|.+++...++.++..|+++++.+.
T Consensus       361 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~g~~~~~~~~l~~G~~vv~~~~  440 (718)
T PRK08043        361 KQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTPNDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPS  440 (718)
T ss_pred             CCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhhCCCccCeEEEcCcchhhhhhHHHHHHHHHcCCEEEEeCC
Confidence            34578999999999999999999999999998888878888899999999999999999998878899999999998763


Q ss_pred             CCCChhhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHhCCceecccCcccc
Q 014065          237 GRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEA  316 (431)
Q Consensus       237 ~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~i~~~yg~tE~  316 (431)
                       .++...+++.+.++++|++..+|+++..+.+..   ...+++++|.+++||+++++++.+.+++.+|+++++.||+||+
T Consensus       441 -~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~---~~~~~~~lr~i~~gg~~l~~~~~~~~~~~~g~~l~~~YG~TE~  516 (718)
T PRK08043        441 -PLHYRIVPELVYDRNCTVLFGTSTFLGNYARFA---NPYDFARLRYVVAGAEKLQESTKQLWQDKFGLRILEGYGVTEC  516 (718)
T ss_pred             -cccHHHHHHHHHhcCCeEEEchHHHHHHhhhhc---CcccccceEEEEEeCccCCHHHHHHHHHHcCCCeecccCcccc
Confidence             356778889999999999999999998876542   1234789999999999999999999999999999999999999


Q ss_pred             cCcccCCCCCCCCCCCCCCccccc-cceEEEECCCCCcCCCCceeeEEEeCCccccccccC--cch-------hhh-ccc
Q 014065          317 THLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNN--PEA-------NKS-AFL  385 (431)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d~~~~~~~~~~~Gel~v~~~~~~~gy~~~--~~~-------~~~-~~~  385 (431)
                      ++.+.....   .....+++|+|+ +.+++++|+++.    ++.|||+++|++++.||+++  ++.       +.+ .+.
T Consensus       517 ~~~~~~~~~---~~~~~~svG~p~pg~~~~i~d~~~~----~~~Gel~v~g~~v~~GY~~~e~~~~~~~~~~~~~~~~~~  589 (718)
T PRK08043        517 APVVSINVP---MAAKPGTVGRILPGMDARLLSVPGI----EQGGRLQLKGPNIMNGYLRVEKPGVLEVPTAENARGEME  589 (718)
T ss_pred             cceEEecCC---cccCCCCCCCcCCCCeeEEecCCCC----CCceEEEEecCCccccccCCCCccccccccccccccccc
Confidence            877655432   234578999999 899999997653    45699999999999999983  331       111 234


Q ss_pred             CCceecCceEEEcCCCeEEEecccccceecCCeeccccceecc
Q 014065          386 FGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLA  428 (431)
Q Consensus       386 ~g~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a  428 (431)
                      +|||+|||+|++|+||++++.||.+|+||++|++|+|.|||.+
T Consensus       590 ~gw~~TGDlg~~d~dG~l~i~GR~~d~I~~~G~~V~p~eIE~~  632 (718)
T PRK08043        590 RGWYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEMVSLEMVEQL  632 (718)
T ss_pred             CCeEecCCEEEEcCCCcEEEEecCCCeeEeCcEEcCHHHHHHH
Confidence            6999999999999999999999999999999999999999985

>PRK12583 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.7e-59  Score=459.80  Aligned_cols=426  Identities=27%  Similarity=0.387  Sum_probs=350.4

Q ss_pred             CcccHHHHHHHHHHhcCCcceEEecC-CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCc
Q 014065            2 EGVTLIGLLNQVIDQFSSKRALSVSG-KFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARA   80 (431)
Q Consensus         2 ~~~tl~~~l~~~a~~~p~~~a~~~~~-~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~   80 (431)
                      .+.|+.++|++.++++|+++|+++.+ ++.+||.||.++++++|++|.+.|+++||+|+++++|+++++++++||+++|+
T Consensus        16 ~~~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~~a~~~~G~   95 (558)
T PRK12583         16 LTQTIGDAFDATVARFPDREALVVRHQALRYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGA   95 (558)
T ss_pred             ccCcHHHHHHHHHHHCCCCeEEEecCCCcEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHhhCC
Confidence            45789999999999999999998753 47899999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHHHHhcCCceEEEecCCchh-----HHHHHHHhcC-----------cc--cccccccccc--hhhh
Q 014065           81 TAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNA-----AAQAAASKLN-----------IS--HATATLLDAD--SELT  140 (431)
Q Consensus        81 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~-----~~~~~~~~~~-----------~~--~~~~~~~~~~--~~~~  140 (431)
                      +++++++..+.+++.++++.++++.+|+++....     .+........           ..  ...+......  ....
T Consensus        96 ~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (558)
T PRK12583         96 ILVNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRGVVSLAPAPPPGFLA  175 (558)
T ss_pred             EEEecCCCCCHHHHHHHHHhcCCcEEEEeccccccchhHHHHHHhhhhccccccccccccCCcceEEEEecCCCCccccc
Confidence            9999999999999999999999999999865321     1111111100           00  0000000000  0000


Q ss_pred             hhhcccc-----ccccccccCCCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHH
Q 014065          141 LSLAHSE-----SDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVH  215 (431)
Q Consensus       141 ~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  215 (431)
                      +......     ............++++++++|||||||.||+|.++|.++..++......+++.++++++..+|++|.+
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~  255 (558)
T PRK12583        176 WHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESLGLTEHDRLCVPVPLYHCF  255 (558)
T ss_pred             hHhhhhcccccccccccccccccCCCCcEEEEECCCCCCCCceEEeeHHHHHHHHHHHHHHhCCCCCCeEEEecCchhhh
Confidence            0000000     00001112234578899999999999999999999999998888888888999999999999999999


Q ss_pred             HHHHHHHHHHhcCCEEEeCCCCCCChhhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHH
Q 014065          216 GMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVI  295 (431)
Q Consensus       216 ~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~  295 (431)
                      +....++.++..|++++++.. .+++..+++.++++++|++.++|+++..++...... ..+++++|.+++||+++++++
T Consensus       256 g~~~~~~~~l~~g~~v~~~~~-~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~-~~~~~~lr~i~~~G~~~~~~~  333 (558)
T PRK12583        256 GMVLANLGCMTVGACLVYPNE-AFDPLATLQAVEEERCTALYGVPTMFIAELDHPQRG-NFDLSSLRTGIMAGAPCPIEV  333 (558)
T ss_pred             hHHHHHHHHHhcCceEEeecC-CCCHHHHHHHHHHcCCeEEeccHHHHHHHHcccccc-CCCchhheEEEecCCCCCHHH
Confidence            998889999999999987653 578999999999999999999999998887665432 345789999999999999999


Q ss_pred             HHHHHHHhC-CceecccCcccccCcccCCCCCCCCCCCCCCccccc-cceEEEECCCCCcCCCCceeeEEEeCCcccccc
Q 014065          296 LSRLEEAFG-APVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGY  373 (431)
Q Consensus       296 ~~~~~~~~~-~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d~~~~~~~~~~~Gel~v~~~~~~~gy  373 (431)
                      .+++.+.++ ..+++.||+||++.++..+...........++|+|. ++.++++|+++.+++.|+.|||+++|+.++.||
T Consensus       334 ~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~~~~~~~g~~Gel~v~g~~~~~gy  413 (558)
T PRK12583        334 MRRVMDEMHMAEVQIAYGMTETSPVSLQTTAADDLERRVETVGRTQPHLEVKVVDPDGATVPRGEIGELCTRGYSVMKGY  413 (558)
T ss_pred             HHHHHHHcCCcceeccccccccccceeccCcccccccccCCCCccCCCCeEEEECCCCCCCCCCCeeEEEEEeCccchhh
Confidence            999999886 579999999999987766543222334567899999 899999998899999999999999999999999


Q ss_pred             ccCcchhhhcc-cCCceecCceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          374 KNNPEANKSAF-LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       374 ~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      +++++.+...+ .++||+|||+|++++||++++.||.+|+|+++|.+|+|.+||.+.
T Consensus       414 ~~~~~~~~~~~~~~~~~~TGDl~~~~~dg~l~i~GR~~~~i~~~G~~v~~~~IE~~l  470 (558)
T PRK12583        414 WNNPEATAESIDEDGWMHTGDLATMDEQGYVRIVGRSKDMIIRGGENIYPREIEEFL  470 (558)
T ss_pred             cCChHHHHhhcCCCCCeeccceEEECCCccEEEEecccceeEECCEEeCHHHHHHHH
Confidence            99998887777 679999999999999999999999999999999999999999753

>PRK06188 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.5e-59  Score=456.16  Aligned_cols=420  Identities=27%  Similarity=0.359  Sum_probs=349.1

Q ss_pred             CcccHHHHHHHHHHhcCCcceEEecCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcE
Q 014065            2 EGVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARAT   81 (431)
Q Consensus         2 ~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~   81 (431)
                      ...|+.++|.++++++|+++|+++.+ +.+||.||.++++++|..|.+.|+++|++|+++++|+++++++++||+++|++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~Ty~~l~~~~~~~a~~L~~~gv~~~~~V~i~~~~~~~~~~~~la~~~~G~~   88 (524)
T PRK06188         10 SGATYGHLLVSALKRYPDRPALVLGD-TRLTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQLAGLR   88 (524)
T ss_pred             CCccHHHHHHHHHHHCCCCeEEEECC-CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCCE
Confidence            45689999999999999999999755 79999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHHHHhcCCceEEEecCC-chhHHHHHHHhcCcccccccccccchhhhhhhccccccccccccCCCCC
Q 014065           82 AAPLNAAYTPDEFEFYLSDSESKLLLTPAE-GNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDP  160 (431)
Q Consensus        82 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (431)
                      ++|++|..+.+++.++++.++++.+++++. ..................+..........+..... ............+
T Consensus        89 ~v~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  167 (524)
T PRK06188         89 RTALHPLGSLDDHAYVLEDAGISTLIVDPAPFVERALALLARVPSLKHVLTLGPVPDGVDLLAAAA-KFGPAPLVAAALP  167 (524)
T ss_pred             EEecccCCCHHHHHHHHHhcCceEEEEecchhhHHHHHHhhhcCCceEEEEeCCccchhhHHHhhh-ccCcccccccCCC
Confidence            999999999999999999999999999876 33333222221111111111111100000000000 0001111122234


Q ss_pred             CCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCCCCCCC
Q 014065          161 SDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFS  240 (431)
Q Consensus       161 ~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~  240 (431)
                      +++++++|||||||.||+|.++|.++...+......+++..++++++.+|++|.+++.  ++.++..|+++++.+  .++
T Consensus       168 ~~~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~--~~~~l~~G~~~~~~~--~~~  243 (524)
T PRK06188        168 PDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEWEWPADPRFLMCTPLSHAGGAF--FLPTLLRGGTVIVLA--KFD  243 (524)
T ss_pred             CCeEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCcEEEEecCchhhhhHH--HHHHHHcCCEEEEcC--CCC
Confidence            6699999999999999999999999999888888888999999999999999998864  578899999999987  678


Q ss_pred             hhhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHhCCceecccCcccccCcc
Q 014065          241 ASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLM  320 (431)
Q Consensus       241 ~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~  320 (431)
                      +..+++.++++++|++.++|+++..+++..... ..+++++|.+++||++++++..+.+.+.++..+++.||+||++..+
T Consensus       244 ~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~-~~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~  322 (524)
T PRK06188        244 PAEVLRAIEEQRITATFLVPTMIYALLDHPDLR-TRDLSSLETVYYGASPMSPVRLAEAIERFGPIFAQYYGQTEAPMVI  322 (524)
T ss_pred             HHHHHHHHHHhCCEEEEehHHHHHHHHhCcCcc-CCCCcceeEEEEcCCCCCHHHHHHHHHHhCchhhheeCccccCCce
Confidence            999999999999999999999999998876543 2357899999999999999999999888998999999999997665


Q ss_pred             cCCCCCCC---CCCCCCCccccc-cceEEEECCCCCcCCCCceeeEEEeCCccccccccCcchhhhcccCCceecCceEE
Q 014065          321 SSNPLPED---GPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGY  396 (431)
Q Consensus       321 ~~~~~~~~---~~~~~~~~G~~~-~~~~~i~d~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~  396 (431)
                      ........   ......++|+|+ ++.++++|+++++++.|+.|||+++|+.++.||++++..+...+.+|||+|||+++
T Consensus       323 ~~~~~~~~~~~~~~~~~~~G~p~~g~~v~i~~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~  402 (524)
T PRK06188        323 TYLRKRDHDPDDPKRLTSCGRPTPGLRVALLDEDGREVAQGEVGEICVRGPLVMDGYWNRPEETAEAFRDGWLHTGDVAR  402 (524)
T ss_pred             eecCchhccccccccCCccccccCCcEEEEEcCCCCCCCCCCeeEEEEECcchhhhhcCChHHhhhhhcCCceeecceEE
Confidence            54432111   234567899999 89999999999999999999999999999999999999998888899999999999


Q ss_pred             EcCCCeEEEecccccceecCCeeccccceecc
Q 014065          397 FDSDGYLHLVGRIKELINRGGNLHESISLFLA  428 (431)
Q Consensus       397 ~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a  428 (431)
                      ++++|++++.||.+|+|+++|++|+|.+||.+
T Consensus       403 ~~~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~  434 (524)
T PRK06188        403 EDEDGFYYIVDRKKDMIVTGGFNVFPREVEDV  434 (524)
T ss_pred             EcCCccEEEEeccccceecCCEEECHHHHHHH
Confidence            99999999999999999999999999999975

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=5.3e-59  Score=457.80  Aligned_cols=422  Identities=25%  Similarity=0.404  Sum_probs=340.4

Q ss_pred             cccHHHHHHHHHHhcCCcceEEecCCCcccHHHHHHHHHHHHHHHHHc-CCCCCCEEEEECCCcHHHHHHHHHHHHhCcE
Q 014065            3 GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAA-GINAGDVVALTFPNTVEFVIMFLAVIRARAT   81 (431)
Q Consensus         3 ~~tl~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~~-gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~   81 (431)
                      +.++.++|.++++++|+++|++..+ +++||.||.++++++|++|.+. |+++||+|+++++|+++++++++||+++|++
T Consensus        23 ~~~~~~~l~~~~~~~p~~~a~~~~~-~~~Ty~~l~~~~~~~a~~L~~~~gi~~gd~V~i~~~n~~e~~~~~la~~~~G~v  101 (562)
T PRK12492         23 YKSVVEVFERSCKKFADRPAFSNLG-VTLSYAELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAVFGALRAGLI  101 (562)
T ss_pred             cCcHHHHHHHHHHhCCCCeeEecCC-ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeE
Confidence            3589999999999999999998654 6999999999999999999985 9999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCccccccc-c-----------ccc--------------
Q 014065           82 AAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATAT-L-----------LDA--------------  135 (431)
Q Consensus        82 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~-~-----------~~~--------------  135 (431)
                      ++++++..+.+++.++++.++++++++++...+................. .           ...              
T Consensus       102 ~v~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (562)
T PRK12492        102 VVNTNPLYTAREMRHQFKDSGARALVYLNMFGKLVQEVLPDTGIEYLIEAKMGDLLPAAKGWLVNTVVDKVKKMVPAYHL  181 (562)
T ss_pred             EeccCccCCHHHHHHHHhccCceEEEeccccchHHHHhhhccCceEEEeechhhccccccchhcccccccccccccccCC
Confidence            99999999999999999999999999987654444333221110000000 0           000              


Q ss_pred             chhhhhhhccccccccccccCCCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhc---------CCC-CCeE
Q 014065          136 DSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYK---------LTE-SDST  205 (431)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~---------~~~-~~~~  205 (431)
                      .....+...................+++++++|||||||.||+|.++|.++..+.......+.         +.. ++++
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (562)
T PRK12492        182 PQAVPFKQALRQGRGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQPLMKEGQEVM  261 (562)
T ss_pred             cccccHHHHHhccCCCCCCCCCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHHHHHHHHhcccccccccccCCCeEE
Confidence            000000000000000011122345688999999999999999999999999877665554432         222 3567


Q ss_pred             EEecChhhHHHHHHHHHHHHhcCCEEEeCCCCCCChhhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEE
Q 014065          206 VIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIR  285 (431)
Q Consensus       206 ~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~  285 (431)
                      +..+|++|.+++...++..+..|...++... ..++..+++.++++++|++..+|+++..+.+..... ..+++++|.++
T Consensus       262 ~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~-~~~~~~lr~~~  339 (562)
T PRK12492        262 IAPLPLYHIYAFTANCMCMMVSGNHNVLITN-PRDIPGFIKELGKWRFSALLGLNTLFVALMDHPGFK-DLDFSALKLTN  339 (562)
T ss_pred             EEecchHHHHHHHHHHHHHhhcCceEEEecC-CcCHHHHHHHHHHhCCceeeCcHHHHHHHHhCcCcc-cccccceeEEE
Confidence            8899999999988777778888887776542 468899999999999999999999999998765432 34578999999


Q ss_pred             eccCCCcHHHHHHHHHHhCCceecccCcccccCcccCCCCCCCCCCCCCCccccc-cceEEEECCCCCcCCCCceeeEEE
Q 014065          286 SCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCI  364 (431)
Q Consensus       286 ~~g~~~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d~~~~~~~~~~~Gel~v  364 (431)
                      +||+++++++.+.+.+.+++++++.||+||++.++..+...  .....+++|+|+ +++++|+|+++++++.|+.|||++
T Consensus       340 ~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~--~~~~~~~~G~p~~~~~v~ivd~~~~~~~~g~~Gel~v  417 (562)
T PRK12492        340 SGGTALVKATAERWEQLTGCTIVEGYGLTETSPVASTNPYG--ELARLGTVGIPVPGTALKVIDDDGNELPLGERGELCI  417 (562)
T ss_pred             eccccCCHHHHHHHHHHhCCceeeccCccccCceeeecCCc--ccccCCccceecCCCEEEEECCCCCCCCCCCceEEEE
Confidence            99999999999999998899999999999998776654421  233457899999 899999999999999999999999


Q ss_pred             eCCccccccccCcchhhhccc-CCceecCceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          365 RGPNVTKGYKNNPEANKSAFL-FGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       365 ~~~~~~~gy~~~~~~~~~~~~-~g~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      +|+.++.||+++++.+.+.|. +|||+|||+|++|++|++++.||.+|+||++|++|+|.+||.+.
T Consensus       418 ~g~~~~~gY~~~~~~t~~~~~~~g~~~TGD~g~~~~~G~l~i~GR~~~~i~~~G~~i~~~eIE~~l  483 (562)
T PRK12492        418 KGPQVMKGYWQQPEATAEALDAEGWFKTGDIAVIDPDGFVRIVDRKKDLIIVSGFNVYPNEIEDVV  483 (562)
T ss_pred             eCCccccccccCchhhhhcccCCCceecCcEEEECCCCeEEEecccCCeEEECCEEECHHHHHHHH
Confidence            999999999999998888874 69999999999999999999999999999999999999999864

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=100.00  E-value=1.2e-59  Score=499.61  Aligned_cols=423  Identities=24%  Similarity=0.326  Sum_probs=349.4

Q ss_pred             ccHHHHHHHHHHhcCCcceEEecCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcEEE
Q 014065            4 VTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAA   83 (431)
Q Consensus         4 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v   83 (431)
                      .|+.+.++++++++|+++|+++.+++++||+||.++++++|++|++ ++++||+|+++++|+++++++++||+++|++++
T Consensus       615 ~~l~~~~~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~-~~~~g~~V~i~~~n~~~~~~~~la~~~~G~v~v  693 (1146)
T PRK08633        615 PPLAEAWIDTAKRNWSRLAVADSTGGELSYGKALTGALALARLLKR-ELKDEENVGILLPPSVAGALANLALLLAGKVPV  693 (1146)
T ss_pred             CCHHHHHHHHHHhcCCCcEEEcCCCCcCcHHHHHHHHHHHHHHHHH-hCCCCCeEEEECCCchHHHHHHHHHHHcCCEEE
Confidence            5789999999999999999986555799999999999999999987 589999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHH--hcCcccccccccccc----hhhhhhhcccc--ccc---cc
Q 014065           84 PLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAAS--KLNISHATATLLDAD----SELTLSLAHSE--SDT---NA  152 (431)
Q Consensus        84 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~--~~~---~~  152 (431)
                      |++|..+.+++.+++++++++.++++++..+...+...  ........+...+..    ....+......  ...   ..
T Consensus       694 ~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  773 (1146)
T PRK08633        694 NLNYTASEAALKSAIEQAQIKTVITSRKFLEKLKNKGFDLELPENVKVIYLEDLKAKISKVDKLTALLAARLLPARLLKR  773 (1146)
T ss_pred             EeCCCcCHHHHHHHHHHcCCCEEEEcHHHHHHHhccCCchhcccCceEEEeehhccccchhHHHHHHHHhccCCHHHHHh
Confidence            99999999999999999999999998765444321100  000001111111100    00000000000  000   00


Q ss_pred             cccCCCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEE
Q 014065          153 ISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVT  232 (431)
Q Consensus       153 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~  232 (431)
                      .......++++++++|||||||.||+|.++|.++..++......++..++|++++.+|++|.+++...++.++..|++++
T Consensus       774 ~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~v  853 (1146)
T PRK08633        774 LYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVFNLRNDDVILSSLPFFHSFGLTVTLWLPLLEGIKVV  853 (1146)
T ss_pred             hccCCCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHHhcCCCCCCEEEEcCcHHHHHhHHHHHHHHHHCCCEEE
Confidence            00134567899999999999999999999999999988888888889999999999999999999887889999999998


Q ss_pred             eCCCCCCChhhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHhCCceecccC
Q 014065          233 LPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYA  312 (431)
Q Consensus       233 ~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~i~~~yg  312 (431)
                      +.+. .+++..+++.++++++|++.++|++++.+.+..... ..+++++|.+++||+++++++.+.+++.+++++++.||
T Consensus       854 ~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-~~~~~~lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~YG  931 (1146)
T PRK08633        854 YHPD-PTDALGIAKLVAKHRATILLGTPTFLRLYLRNKKLH-PLMFASLRLVVAGAEKLKPEVADAFEEKFGIRILEGYG  931 (1146)
T ss_pred             EeCC-CCCHHHHHHHHHHcCCeEEEecHHHHHHHHhccccC-cccCCCeeeEEEcCCcCCHHHHHHHHHHhCCCeecccc
Confidence            8653 578999999999999999999999999988754332 34578999999999999999999999999999999999


Q ss_pred             cccccCcccCCCCCC-------CCCCCCCCccccc-cceEEEEC-CCCCcCCCCceeeEEEeCCccccccccCcchhhhc
Q 014065          313 MTEATHLMSSNPLPE-------DGPHKPGSVGRPV-GQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSA  383 (431)
Q Consensus       313 ~tE~~~~~~~~~~~~-------~~~~~~~~~G~~~-~~~~~i~d-~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~  383 (431)
                      +||++++++.+....       +....++++|+|+ +++++|+| +++++++.|+.|||+++|+.++.||+++++.+++.
T Consensus       932 ~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~ 1011 (1146)
T PRK08633        932 ATETSPVASVNLPDVLAADFKRQTGSKEGSVGMPLPGVAVRIVDPETFEELPPGEDGLILIGGPQVMKGYLGDPEKTAEV 1011 (1146)
T ss_pred             cccCcceEEEecCcccccccccccCCCCCCccccCCCCEEEEEcCCCCccCCCCCceEEEEcCCCccccccCCccchHHH
Confidence            999987765543211       1123567899999 89999999 46899999999999999999999999999999888


Q ss_pred             ccC----CceecCceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          384 FLF----GWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       384 ~~~----g~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      +.+    |||+|||+|++|+||++++.||.||+||++|++|+|.|||.+.
T Consensus      1012 ~~~~~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l 1061 (1146)
T PRK08633       1012 IKDIDGIGWYVTGDKGHLDEDGFLTITDRYSRFAKIGGEMVPLGAVEEEL 1061 (1146)
T ss_pred             hhcCCCCCeEECCCEEEEcCCceEEEEecccchhhhCcEEECHHHHHHHH
Confidence            877    9999999999999999999999999999999999999999863

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=100.00  E-value=9.3e-60  Score=506.78  Aligned_cols=421  Identities=21%  Similarity=0.280  Sum_probs=338.1

Q ss_pred             ccHHHHHHHHHHhcCCcceEEec--------CCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHH
Q 014065            4 VTLIGLLNQVIDQFSSKRALSVS--------GKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAV   75 (431)
Q Consensus         4 ~tl~~~l~~~a~~~p~~~a~~~~--------~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~   75 (431)
                      .++.++|+++|+++|+++|+++.        +++++||+||.++++++|++|++.|+++||+|+++++|+++++++++||
T Consensus       236 ~~l~~~~~~~a~~~pd~~A~~~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~~~~~i~~~lA~  315 (1389)
T TIGR03443       236 GAIHDIFADNAEKHPDRTCVVETPSFLDPSSKTRSFTYKQINEASNILAHYLLKTGIKRGDVVMIYAYRGVDLVVAVMGV  315 (1389)
T ss_pred             CcHHHHHHHHHHhCCCCeEEEeccccccccCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEecCCHHHHHHHHHH
Confidence            46899999999999999999852        3479999999999999999999999999999999999999999999999


Q ss_pred             HHhCcEEEecCCCCCHHHHHHHHhcCCceEEEecCCch---hHHHHHHHh-cCccc--ccccccccch----hhhhh---
Q 014065           76 IRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGN---AAAQAAASK-LNISH--ATATLLDADS----ELTLS---  142 (431)
Q Consensus        76 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~---~~~~~~~~~-~~~~~--~~~~~~~~~~----~~~~~---  142 (431)
                      +++|++++|++|.++.+++.++++.+++++++++....   ......... .....  ..+.+.+...    .....   
T Consensus       316 l~~G~~~vpldp~~p~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (1389)
T TIGR03443       316 LKAGATFSVIDPAYPPARQTIYLSVAKPRALIVIEKAGTLDQLVRDYIDKELELRTEIPALALQDDGSLVGGSLEGGETD  395 (1389)
T ss_pred             HhhCcEEeccCCCCcHHHHHHHHHhcCCCEEEEeccccccchhhhhhhhcccccccccceEEeccccccccccccccccc
Confidence            99999999999999999999999999999999876421   111111100 00000  0000000000    00000   


Q ss_pred             hcccccc-ccccccCCCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHHHHHHHH
Q 014065          143 LAHSESD-TNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGL  221 (431)
Q Consensus       143 ~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  221 (431)
                      ....... ..........++++++++|||||||.||+|+++|+++.+.+......+++.++++++...|++|..++.. +
T Consensus       396 ~~~~~~~~~~~~~~~~~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~~~-i  474 (1389)
T TIGR03443       396 VLAPYQALKDTPTGVVVGPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRFGLSENDKFTMLSGIAHDPIQRD-M  474 (1389)
T ss_pred             ccccccccccCCCCCcCCCCCceEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCCEEEEecCceecchHHH-H
Confidence            0000000 0001112345789999999999999999999999999999888888899999999999999999988766 8


Q ss_pred             HHHHhcCCEEEeCCCCC-CChhhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHH
Q 014065          222 LSSFAAGAAVTLPAAGR-FSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLE  300 (431)
Q Consensus       222 ~~~l~~G~~~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~  300 (431)
                      +.+|..|+++++++... .++..+++.++++++|++.++|++++.+....    ...++++|.+++||+++++...+.+.
T Consensus       475 ~~~L~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~----~~~~~~lr~~~~gGe~l~~~~~~~~~  550 (1389)
T TIGR03443       475 FTPLFLGAQLLVPTADDIGTPGRLAEWMAKYGATVTHLTPAMGQLLSAQA----TTPIPSLHHAFFVGDILTKRDCLRLQ  550 (1389)
T ss_pred             HHHHhCCCEEEEcChhhccCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcc----cccCCCccEEEEecccCCHHHHHHHH
Confidence            99999999999976422 36889999999999999999999999887542    22378999999999999999999988


Q ss_pred             HHh-CCceecccCcccccCcccCCCCCCCC--------CCCCCCccccc-cceEEEECCC--CCcCCCCceeeEEEeCCc
Q 014065          301 EAF-GAPVLEAYAMTEATHLMSSNPLPEDG--------PHKPGSVGRPV-GQEIAILDEI--GVPQEGGAKGEVCIRGPN  368 (431)
Q Consensus       301 ~~~-~~~i~~~yg~tE~~~~~~~~~~~~~~--------~~~~~~~G~~~-~~~~~i~d~~--~~~~~~~~~Gel~v~~~~  368 (431)
                      +.+ +++++|.||+||++..++........        .....++|+|+ +++++|+|++  +++++.|+.|||+|+||+
T Consensus       551 ~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~~G~~GEL~i~G~~  630 (1389)
T TIGR03443       551 TLAENVCIVNMYGTTETQRAVSYFEIPSRSSDSTFLKNLKDVMPAGKGMKNVQLLVVNRNDRTQTCGVGEVGEIYVRAGG  630 (1389)
T ss_pred             HhCCCCEEEECccCCccceeEEEEEccccccccchhhcccCcCcCCCccCCCEEEEECCccCCCcCCCCCceEEEecccc
Confidence            766 78999999999998766543221110        11345789999 8999999965  578999999999999999


Q ss_pred             cccccccCcchhhhccc-----------------------------CCceecCceEEEcCCCeEEEecccccceecCCee
Q 014065          369 VTKGYKNNPEANKSAFL-----------------------------FGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNL  419 (431)
Q Consensus       369 ~~~gy~~~~~~~~~~~~-----------------------------~g~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~  419 (431)
                      +++||+++++.+++.|.                             ++||+|||+|++++||.|+|.||.||+||++|++
T Consensus       631 v~~GY~~~p~~t~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~TGDlg~~~~dG~l~~~GR~dd~Iki~G~r  710 (1389)
T TIGR03443       631 LAEGYLGLPELNAEKFVNNWFVDPSHWIDLDKENNKPEREFWLGPRDRLYRTGDLGRYLPDGNVECCGRADDQVKIRGFR  710 (1389)
T ss_pred             cchhcCCChhHhhhhccCCcccCcccccccccccccccccccCCCccceeecCCceeEcCCCCEEEecccCCEEEeCcEE
Confidence            99999999999988773                             4799999999999999999999999999999999


Q ss_pred             ccccceeccc
Q 014065          420 HESISLFLAK  429 (431)
Q Consensus       420 i~~~~iE~a~  429 (431)
                      |+|.|||.+.
T Consensus       711 I~p~eIE~~l  720 (1389)
T TIGR03443       711 IELGEIDTHL  720 (1389)
T ss_pred             ecHHHHHHHH
Confidence            9999999763

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PRK12476 putative fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=1e-59  Score=466.57  Aligned_cols=413  Identities=23%  Similarity=0.335  Sum_probs=325.6

Q ss_pred             cccHHHHHHHHHHhcCCcceEEecC------C--CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHH
Q 014065            3 GVTLIGLLNQVIDQFSSKRALSVSG------K--FDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLA   74 (431)
Q Consensus         3 ~~tl~~~l~~~a~~~p~~~a~~~~~------~--~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA   74 (431)
                      .+|+.++++++++++|+++|+++.+      +  +++||+||.++++++|++|.+. +++||+|+++++|+++++++++|
T Consensus        33 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~V~l~~~n~~e~~~~~lA  111 (612)
T PRK12476         33 GTTLISLIERNIANVGDTVAYRYLDHSHSAAGCAVELTWTQLGVRLRAVGARLQQV-AGPGDRVAILAPQGIDYVAGFFA  111 (612)
T ss_pred             cCcHHHHHHHHHHhCCCceEEEEEccCCCCCCcceEEeHHHHHHHHHHHHHHHHHh-cCCCCEEEEECCCChhHHHHHHH
Confidence            4689999999999999999998632      1  4899999999999999999986 99999999999999999999999


Q ss_pred             HHHhCcEEEec-CCCCC--HHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCc-c-cccccccccchhhhhhhcccccc
Q 014065           75 VIRARATAAPL-NAAYT--PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNI-S-HATATLLDADSELTLSLAHSESD  149 (431)
Q Consensus        75 ~~~~G~~~v~l-~~~~~--~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~  149 (431)
                      |+++|++++|+ ++..+  .+++.++++.++++++|++++..+.+......... . ...+.....      ..    ..
T Consensus       112 ~~~aG~v~vpl~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------~~----~~  181 (612)
T PRK12476        112 AIKAGTIAVPLFAPELPGHAERLDTALRDAEPTVVLTTTAAAEAVEGFLRNLPRLRRPRVIAIDAI------PD----SA  181 (612)
T ss_pred             HHHcCceeEecCCCCcchhHHHHHHHHHhCCCCEEEEcHHHHHHHHHHHhhcccccCceEEEeccc------cc----cc
Confidence            99999999999 57766  78999999999999999987765554443322211 0 011111100      00    00


Q ss_pred             ccccccCCCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhc-CCCCCeEEEecChhhHHHHHHHHHHHHhcC
Q 014065          150 TNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYK-LTESDSTVIVLPLFHVHGMLAGLLSSFAAG  228 (431)
Q Consensus       150 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G  228 (431)
                      ..........++++++++|||||||.||+|.++|+++..++......++ +.++++.++.+|++|..++...+..++..|
T Consensus       182 ~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~Pl~h~~g~~~~~~~~~~gg  261 (612)
T PRK12476        182 GESFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSIDLLDRNTHGVSWLPLYHDMGLSMIGFPAVYGG  261 (612)
T ss_pred             cccccCCCCCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHHHhccCCCCceEEEeCCcccccchHHHHHHHhcCC
Confidence            0011112345689999999999999999999999999887777666677 788999999999999999877444445444


Q ss_pred             CEEEeCCCCCC--ChhhHHHHHH--HhcceeeecchHHHHHHHhccc---CCCCCCCCCccEEEeccCCCcHHHHHHHHH
Q 014065          229 AAVTLPAAGRF--SASTFWQDMI--KYNATWYTAVPTIHQIVLDRHV---AKPEPVYPKLRFIRSCSASLAPVILSRLEE  301 (431)
Q Consensus       229 ~~~~~~~~~~~--~~~~~~~~i~--~~~~t~~~~~p~~~~~l~~~~~---~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~  301 (431)
                      .++++.+. .+  ++..+++.++  +++++.++.+|+++..++....   .....+++++| +++||+++++++.+.+.+
T Consensus       262 ~~~~~~~~-~~~~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~l~~lr-~~~gg~~~~~~~~~~~~~  339 (612)
T PRK12476        262 HSTLMSPT-AFVRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQRGLPAEGDDIDLSNVV-LIIGSEPVSIDAVTTFNK  339 (612)
T ss_pred             eEEEECHH-HHHHHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHHhcChhhhcCcchhHhe-EEecccCCCHHHHHHHHH
Confidence            44444331 23  7889999995  4899999999999888766421   11233578999 999999999999999998


Q ss_pred             Hh---CC---ceecccCcccccCcccCCCCCCC------------------------CCCCCCCccccc-cceEEEECCC
Q 014065          302 AF---GA---PVLEAYAMTEATHLMSSNPLPED------------------------GPHKPGSVGRPV-GQEIAILDEI  350 (431)
Q Consensus       302 ~~---~~---~i~~~yg~tE~~~~~~~~~~~~~------------------------~~~~~~~~G~~~-~~~~~i~d~~  350 (431)
                      .|   |+   .+++.||+||++..++.......                        .....+++|+|+ +.+++|+|++
T Consensus       340 ~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~~~~g~~v~ivd~~  419 (612)
T PRK12476        340 AFAPYGLPRTAFKPSYGIAEATLFVATIAPDAEPSVVYLDREQLGAGRAVRVAADAPNAVAHVSCGQVARSQWAVIVDPD  419 (612)
T ss_pred             HHHhcCCCccccccccchhhhheeeeccCCCCCceEEEEcHHHhhCCCeeecCCCCCCcceeEeCCCcCCCCEEEEEeCC
Confidence            87   44   48999999998865543221100                        001235789999 8999999987


Q ss_pred             -CCcCCCCceeeEEEeCCccccccccCcchhhhccc-------------------CCceecCceEEEcCCCeEEEecccc
Q 014065          351 -GVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFL-------------------FGWFHTGDIGYFDSDGYLHLVGRIK  410 (431)
Q Consensus       351 -~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-------------------~g~~~TGD~~~~~~~g~l~~~gR~~  410 (431)
                       |++++.|+.|||+++|++++.||+++++.+++.|.                   ++||+|||+|++ +||+++|+||.|
T Consensus       420 ~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~w~~TGDlg~~-~dG~l~i~GR~~  498 (612)
T PRK12476        420 TGAELPDGEVGEIWLHGDNIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAADDGTWLRTGDLGVY-LDGELYITGRIA  498 (612)
T ss_pred             CCcCCCCCCEEEEEEcCCcccccccCChHHHHHHHhhhhccccccccccccccCCCCeeecccccee-ECCEEEEEeccC
Confidence             99999999999999999999999999999888774                   249999999998 599999999999


Q ss_pred             cceecCCeeccccceeccc
Q 014065          411 ELINRGGNLHESISLFLAK  429 (431)
Q Consensus       411 d~i~~~G~~i~~~~iE~a~  429 (431)
                      |+||++|++|+|.|||.+.
T Consensus       499 d~I~~~G~~I~p~eIE~~l  517 (612)
T PRK12476        499 DLIVIDGRNHYPQDIEATV  517 (612)
T ss_pred             cEEEECCcccCHHHHHHHH
Confidence            9999999999999999763

>PLN02330 4-coumarate--CoA ligase-like 1

Probab=100.00  E-value=6.1e-59  Score=456.05  Aligned_cols=418  Identities=27%  Similarity=0.389  Sum_probs=337.9

Q ss_pred             cccHHHHHHHHHHhcCCcceEEec-CCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcE
Q 014065            3 GVTLIGLLNQVIDQFSSKRALSVS-GKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARAT   81 (431)
Q Consensus         3 ~~tl~~~l~~~a~~~p~~~a~~~~-~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~   81 (431)
                      ..|+.+.+.++++.+|+++|+.+. +++.+||.||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++|++
T Consensus        27 ~~~~~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~  106 (546)
T PLN02330         27 KLTLPDFVLQDAELYADKVAFVEAVTGKAVTYGEVVRDTRRFAKALRSLGLRKGQVVVVVLPNVAEYGIVALGIMAAGGV  106 (546)
T ss_pred             CCcHHHHHhhhhhcCCCccEEEecCCCCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHhCcE
Confidence            368999999999999999999864 3579999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCccccccccccc--chhhhhhhc-cccc-cccccccCC
Q 014065           82 AAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDA--DSELTLSLA-HSES-DTNAISKLT  157 (431)
Q Consensus        82 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~-~~~~~~~~~  157 (431)
                      ++|+++..+.+++.++++.++++++++++.........    ...  .+.+...  .....+... .... .........
T Consensus       107 ~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~----~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (546)
T PLN02330        107 FSGANPTALESEIKKQAEAAGAKLIVTNDTNYGKVKGL----GLP--VIVLGEEKIEGAVNWKELLEAADRAGDTSDNEE  180 (546)
T ss_pred             eccCCccCCHHHHHHHHHhcCCeEEEEccchhhhHhhc----CCc--EEEecCCCCCCcccHHHHHhhccccCccccccc
Confidence            99999999999999999999999999998766554322    111  1111110  000001100 0000 001111223


Q ss_pred             CCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhc--CCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCC
Q 014065          158 NDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYK--LTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPA  235 (431)
Q Consensus       158 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~--~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~  235 (431)
                      ..++++++++|||||||.||+|.++|.++..++.......+  ....++.+..+|++|.+++...++.++..|+++++.+
T Consensus       181 ~~~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~g~~~~~~~  260 (546)
T PLN02330        181 ILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSVGPEMIGQVVTLGLIPFFHIYGITGICCATLRNKGKVVVMS  260 (546)
T ss_pred             CCcccEEEEEeCCCCcCCCcEEEEehHHHHHHHHHHhhccCccccCceEEEEecChHHHHHHHHHHHHHhhcCCEEEEec
Confidence            45688999999999999999999999998876543221111  1234678899999999998877888999999999987


Q ss_pred             CCCCChhhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCC--CccEEEeccCCCcHHHHHHHHHHh-CCceecccC
Q 014065          236 AGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYP--KLRFIRSCSASLAPVILSRLEEAF-GAPVLEAYA  312 (431)
Q Consensus       236 ~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~--~l~~i~~~g~~~~~~~~~~~~~~~-~~~i~~~yg  312 (431)
                        .+++..+++.++++++|.+.++|+++..+++..... ..+++  ++|.+++||+++++++++++.+.| ++++++.||
T Consensus       261 --~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~-~~~~~~~~l~~i~~~g~~l~~~~~~~~~~~~~~~~~~~~YG  337 (546)
T PLN02330        261 --RFELRTFLNALITQEVSFAPIVPPIILNLVKNPIVE-EFDLSKLKLQAIMTAAAPLAPELLTAFEAKFPGVQVQEAYG  337 (546)
T ss_pred             --ccCHHHHHHHHHHcCCeeeecCCHHHHHHHhCcccc-ccccchheeeeEEEcCCcCCHHHHHHHHHHcCCCeEEeccc
Confidence              789999999999999999999999999998754322 12233  578999999999999999999998 899999999


Q ss_pred             cccccCcccCCCCCC--CCCCCCCCccccc-cceEEEEC-CCCCcCCCCceeeEEEeCCccccccccCcchhhhcc-cCC
Q 014065          313 MTEATHLMSSNPLPE--DGPHKPGSVGRPV-GQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAF-LFG  387 (431)
Q Consensus       313 ~tE~~~~~~~~~~~~--~~~~~~~~~G~~~-~~~~~i~d-~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g  387 (431)
                      +||++.+........  .......++|+|+ +++++++| +++++++.|+.|||+++|+.++.||+++++.+.+.+ .+|
T Consensus       338 ~tE~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~~p~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g  417 (546)
T PLN02330        338 LTEHSCITLTHGDPEKGHGIAKKNSVGFILPNLEVKFIDPDTGRSLPKNTPGELCVRSQCVMQGYYNNKEETDRTIDEDG  417 (546)
T ss_pred             ccccccceecCCCccccccccccCccccccCCcEEEEEeCCCCccCCCCCceEEEEecchhhhhhccCccchhhhccCCC
Confidence            999986654332111  1124456899999 89999999 568999999999999999999999999998887776 469


Q ss_pred             ceecCceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          388 WFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       388 ~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      ||+|||+|++++||++++.||.+|+|+++|++|+|.+||.+.
T Consensus       418 ~~~TGD~~~~~~dG~l~~~GR~~d~i~~~G~~v~~~~iE~~l  459 (546)
T PLN02330        418 WLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAIL  459 (546)
T ss_pred             ceecccEEEEeCCCcEEEEechHHhhhcCCEEECHHHHHHHH
Confidence            999999999999999999999999999999999999999863

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.1e-58  Score=455.58  Aligned_cols=422  Identities=26%  Similarity=0.425  Sum_probs=341.9

Q ss_pred             cccHHHHHHHHHHhcCCcceEEecCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcEE
Q 014065            3 GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATA   82 (431)
Q Consensus         3 ~~tl~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~   82 (431)
                      ..++.++|...++++|+++|+++.+ +.+||.||.++++++|++|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus        22 ~~~i~~~l~~~a~~~p~~~a~~~~~-~~lTy~~l~~~~~~~a~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~~G~~~  100 (557)
T PRK07059         22 YPSLADLLEESFRQYADRPAFICMG-KAITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAIAAVLRAGYVV  100 (557)
T ss_pred             CCCHHHHHHHHHHHcCCCceEEEcC-ceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHhcCeEE
Confidence            4689999999999999999999755 699999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCccccccccccc-------------------------ch
Q 014065           83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDA-------------------------DS  137 (431)
Q Consensus        83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~  137 (431)
                      +|++|..+.+++.++++.++++++++++.........................                         ..
T Consensus       101 v~v~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (557)
T PRK07059        101 VNVNPLYTPRELEHQLKDSGAEAIVVLENFATTVQQVLAKTAVKHVVVASMGDLLGFKGHIVNFVVRRVKKMVPAWSLPG  180 (557)
T ss_pred             eccCcccCHHHHHHHHHccCceEEEEchhhHHHHHHhhcccCCceeEEecccccccccccccccccccccccccccCCCC
Confidence            99999999999999999999999999877655444433221111110000000                         00


Q ss_pred             hhhhhhccccccccccccCCCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhc----C---CCCCeEEEecC
Q 014065          138 ELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYK----L---TESDSTVIVLP  210 (431)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~----~---~~~~~~~~~~p  210 (431)
                      ...+..................++++++++|||||||.||+|.++|.+++.++......+.    .   .....++..+|
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  260 (557)
T PRK07059        181 HVRFNDALAEGARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKPRPDQLNFVCALP  260 (557)
T ss_pred             cccHHHHhhccCCCCCCCCCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhcccccccCCCCCcEEEEeCC
Confidence            0000000000011111223456789999999999999999999999999876554332221    1   12346778899


Q ss_pred             hhhHHHHHHHHHHHHhcCCEEEeCCCCCCChhhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCC
Q 014065          211 LFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSAS  290 (431)
Q Consensus       211 ~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~  290 (431)
                      ++|.+++....+.++..|++.++.+. ..++..+++.+++++++.+..+|.++..+.+..... ..+++++|.++.||++
T Consensus       261 l~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~-~~~~~~l~~~~~gg~~  338 (557)
T PRK07059        261 LYHIFALTVCGLLGMRTGGRNILIPN-PRDIPGFIKELKKYQVHIFPAVNTLYNALLNNPDFD-KLDFSKLIVANGGGMA  338 (557)
T ss_pred             cHHHHHHHHHHHHHHhhcceEEEecC-CcCHHHHHHHHHHhCCeeeecCHHHHHHHHcCcCcC-cCCchhheEEEecccc
Confidence            99999887777888888888776653 458889999999999999999999999998765432 3347899999999999


Q ss_pred             CcHHHHHHHHHHhCCceecccCcccccCcccCCCCCCCCCCCCCCccccc-cceEEEECCCCCcCCCCceeeEEEeCCcc
Q 014065          291 LAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNV  369 (431)
Q Consensus       291 ~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d~~~~~~~~~~~Gel~v~~~~~  369 (431)
                      +++.+.+.+.+.+++++++.||+||++.++..+..  +....++++|+|+ +.+++++|++|++++.|+.|||+++|+.+
T Consensus       339 ~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~--~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~g~~Gel~v~g~~~  416 (557)
T PRK07059        339 VQRPVAERWLEMTGCPITEGYGLSETSPVATCNPV--DATEFSGTIGLPLPSTEVSIRDDDGNDLPLGEPGEICIRGPQV  416 (557)
T ss_pred             CCHHHHHHHHHHhCCCeeeccccccccchhhcCCC--CCCCcCCcccCccCCcEEEEECCCCCCCCCCCceEEEEeCCcc
Confidence            99999999999899999999999999987665432  2234567999999 89999999999999999999999999999


Q ss_pred             ccccccCcchhhhcc-cCCceecCceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          370 TKGYKNNPEANKSAF-LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       370 ~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      +.||+++++.+...+ .+|||+|||+++++++|++++.||.+|+|+++|++|+|.+||.+.
T Consensus       417 ~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~p~~iE~~l  477 (557)
T PRK07059        417 MAGYWNRPDETAKVMTADGFFRTGDVGVMDERGYTKIVDRKKDMILVSGFNVYPNEIEEVV  477 (557)
T ss_pred             chhhhcCHHHHhhhcccCCceecCcEEEEcCCCcEEEecccccceEECCEEEcHHHHHHHH
Confidence            999999998888776 479999999999999999999999999999999999999999863

>PRK10252 entF enterobactin synthase subunit F; Provisional

Probab=100.00  E-value=1.6e-59  Score=503.32  Aligned_cols=409  Identities=24%  Similarity=0.341  Sum_probs=347.0

Q ss_pred             cccHHHHHHHHHHhcCCcceEEecCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcEE
Q 014065            3 GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATA   82 (431)
Q Consensus         3 ~~tl~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~   82 (431)
                      ..++.++|.++++.+|+++|+++.+ +.+||+||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus       457 ~~~l~~~~~~~~~~~p~~~Al~~~~-~~~Ty~eL~~~~~~la~~L~~~g~~~g~~V~l~~~~~~~~i~~~la~~~~G~~~  535 (1296)
T PRK10252        457 ETTLSALVAQQAAKTPDAPALADAR-YQFSYREMREQVVALANLLRERGVKPGDSVAVALPRSVFLTLALHAIVEAGAAW  535 (1296)
T ss_pred             cCCHHHHHHHHHHhCCCCeEEEcCC-CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEE
Confidence            3579999999999999999998755 699999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCcccccccccccchhhhhhhccccccccccccCCCCCCC
Q 014065           83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSD  162 (431)
Q Consensus        83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (431)
                      +|++|+.+.+++.++++.+++++++++..........      ..... ..       .....  ............+++
T Consensus       536 vpld~~~p~~~~~~~l~~~~~~~~i~~~~~~~~~~~~------~~~~~-~~-------~~~~~--~~~~~~~~~~~~~~~  599 (1296)
T PRK10252        536 LPLDTGYPDDRLKMMLEDARPSLLITTADQLPRFADV------PDLTS-LC-------YNAPL--APQGAAPLQLSQPHH  599 (1296)
T ss_pred             EecCccCHHHHHHHHHHhCCCCEEEECcchhhhcccC------CCcee-ee-------ccccc--ccccCCCCCCCCCCC
Confidence            9999999999999999999999999987644332111      00000 00       00000  000011112235789


Q ss_pred             eEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCCCC-CCCh
Q 014065          163 VALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAG-RFSA  241 (431)
Q Consensus       163 ~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~-~~~~  241 (431)
                      +++++|||||||.||+|.++|.++.+.+......+++.++++++...|++|..+++. ++.+|..|+++++.+.. ..++
T Consensus       600 ~a~i~~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~-~~~~l~~G~~l~~~~~~~~~~~  678 (1296)
T PRK10252        600 TAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHYPLTADDVVLQKTPCSFDVSVWE-FFWPFIAGAKLVMAEPEAHRDP  678 (1296)
T ss_pred             eEEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCCEEEEeCCcchhhhHHH-HHHHHhCCCEEEECChhccCCH
Confidence            999999999999999999999999999999899999999999999999999998876 88899999999987632 4589


Q ss_pred             hhHHHHHHHhcceeeecchHHHHHHHhcccCCC-CCCCCCccEEEeccCCCcHHHHHHHHHHhCCceecccCcccccCcc
Q 014065          242 STFWQDMIKYNATWYTAVPTIHQIVLDRHVAKP-EPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLM  320 (431)
Q Consensus       242 ~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~-~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~  320 (431)
                      ..+++.++++++|++.++|+++..+++...... ...++++|.+++||+++++++.+.+.+.++++++|.||+||++..+
T Consensus       679 ~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~l~n~YG~TE~~~~~  758 (1296)
T PRK10252        679 LAMQQFFAEYGVTTTHFVPSMLAAFVASLTPEGARQSCASLRQVFCSGEALPADLCREWQQLTGAPLHNLYGPTEAAVDV  758 (1296)
T ss_pred             HHHHHHHHHcCCeEEEeCHHHHHHHHhhhccccccccCCCccEEEEecCCCCHHHHHHHHhcCCCEEEeCCCcchhhhee
Confidence            999999999999999999999999887643322 2236899999999999999999999988899999999999998776


Q ss_pred             cCCCCCCCC----CCCCCCccccc-cceEEEECCCCCcCCCCceeeEEEeCCccccccccCcchhhhcccC-------Cc
Q 014065          321 SSNPLPEDG----PHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF-------GW  388 (431)
Q Consensus       321 ~~~~~~~~~----~~~~~~~G~~~-~~~~~i~d~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~-------g~  388 (431)
                      +........    .....++|+|+ ++.++|+|+++++++.|+.|||+++|+++++||+++++.+++.|..       +|
T Consensus       759 ~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~~~g~~Gel~i~g~~~~~GY~~~~~~t~~~f~~~~~~~~~~~  838 (1296)
T PRK10252        759 SWYPAFGEELAAVRGSSVPIGYPVWNTGLRILDARMRPVPPGVAGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERM  838 (1296)
T ss_pred             eeeecccccccccCCCCCCcccccCCCEEEEECCCCCCCCCCCceEEEecccccchhhCCCcccchhhcccCCCCCCCEE
Confidence            654432211    23456899999 8999999999999999999999999999999999999999888742       49


Q ss_pred             eecCceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          389 FHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       389 ~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      |+|||+|++++||.++++||.|++||++|++|+|.|||.+.
T Consensus       839 y~TGDl~~~~~~G~l~~~GR~d~~ik~~G~ri~~~eIE~~l  879 (1296)
T PRK10252        839 YRTGDVARWLDDGAVEYLGRSDDQLKIRGQRIELGEIDRAM  879 (1296)
T ss_pred             EecCceEEEcCCCcEEEecccCCeEEEeeEEecHHHHHHHH
Confidence            99999999999999999999999999999999999999863

>PRK12582 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.7e-59  Score=463.33  Aligned_cols=412  Identities=22%  Similarity=0.325  Sum_probs=321.5

Q ss_pred             cccHHHHHHHHHHhcCCcceEEecCC-----CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHH
Q 014065            3 GVTLIGLLNQVIDQFSSKRALSVSGK-----FDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIR   77 (431)
Q Consensus         3 ~~tl~~~l~~~a~~~p~~~a~~~~~~-----~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~   77 (431)
                      ..|+.++|+++++++|+++|+++.+.     +++||+||.++++++|++|++.|+++||+|+++++|+++++++++||++
T Consensus        48 ~~~l~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~  127 (624)
T PRK12582         48 PRSIPHLLAKWAAEAPDRPWLAQREPGHGQWRKVTYGEAKRAVDALAQALLDLGLDPGRPVMILSGNSIEHALMTLAAMQ  127 (624)
T ss_pred             ccCHHHHHHHHHHHCCCchheecccCCCCceEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHH
Confidence            46799999999999999999987431     5899999999999999999999999999999999999999999999999


Q ss_pred             hCcEEEecCCCCCH-----HHHHHHHhcCCceEEEecCCch-hHHHHHHHhcCcccccccccccc---hhhhhhhccccc
Q 014065           78 ARATAAPLNAAYTP-----DEFEFYLSDSESKLLLTPAEGN-AAAQAAASKLNISHATATLLDAD---SELTLSLAHSES  148 (431)
Q Consensus        78 ~G~~~v~l~~~~~~-----~~l~~~l~~~~~~~ii~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~  148 (431)
                      +|++++|++|.++.     +++.++++.++++++|+++... .............  .+......   ....+.......
T Consensus       128 ~G~v~vpl~p~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~  205 (624)
T PRK12582        128 AGVPAAPVSPAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAPFARALAALDLLDVT--VVHVTGPGEGIASIAFADLAATP  205 (624)
T ss_pred             cCCeEeeccCccccccCCHHHHHHHHHhcCCcEEEecCHHHHHHHHHhhhhcCce--EEEEcCCCcccccccHHHHhhcC
Confidence            99999999999885     8999999999999999986421 1111111111111  11111100   001111110000


Q ss_pred             ccc--ccccCCCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCC---CCeEEEecChhhHHHHHHHHHH
Q 014065          149 DTN--AISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTE---SDSTVIVLPLFHVHGMLAGLLS  223 (431)
Q Consensus       149 ~~~--~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~---~~~~~~~~p~~~~~~~~~~~~~  223 (431)
                      ...  ........++++++++|||||||.||+|.++|.++..+............   .++.+..+|++|.+++...++.
T Consensus       206 ~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~l~~lPl~h~~g~~~~~~~  285 (624)
T PRK12582        206 PTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLRPREPDPPPPVSLDWMPWNHTMGGNANFNG  285 (624)
T ss_pred             CcchhhhhhccCCCCceEEEEEcCCCCCCCceEEeeHHHHHHHHHHHHHhccccCCCCCceEEEechHHHHHhHHHHHHH
Confidence            000  01112345789999999999999999999999999887766555444443   5799999999999998877888


Q ss_pred             HHhcCCEEEeCCCCCCCh---hhHHHHHHHhcceeeecchHHHHHHHhcccCCC---CCCCCCccEEEeccCCCcHHHHH
Q 014065          224 SFAAGAAVTLPAAGRFSA---STFWQDMIKYNATWYTAVPTIHQIVLDRHVAKP---EPVYPKLRFIRSCSASLAPVILS  297 (431)
Q Consensus       224 ~l~~G~~~~~~~~~~~~~---~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~---~~~~~~l~~i~~~g~~~~~~~~~  297 (431)
                      ++..|+++++.+. .+++   ..+++.++++++|++.++|++++.+++......   ..+++++|.+++||+++++++.+
T Consensus       286 ~l~~G~tvvl~~~-~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~slr~i~~gGa~l~~~~~~  364 (624)
T PRK12582        286 LLWGGGTLYIDDG-KPLPGMFEETIRNLREISPTVYGNVPAGYAMLAEAMEKDDALRRSFFKNLRLMAYGGATLSDDLYE  364 (624)
T ss_pred             HHhCceEEEEcCC-CcccchHHHHHHHHHhcCCeEEeccCHHHHHHHHHHhhCHHHHHHHhhheeEEEecCCCCCHHHHH
Confidence            9999999998653 2333   356777889999999999999999876543221   12367999999999999999999


Q ss_pred             HHHHHh------CCceecccCcccccCcccCCCCCCCCCCCCCCccccc-cceEEEECCCCCcCCCCceeeEEEeCCccc
Q 014065          298 RLEEAF------GAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVT  370 (431)
Q Consensus       298 ~~~~~~------~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d~~~~~~~~~~~Gel~v~~~~~~  370 (431)
                      ++.+.+      ++++++.||+||++.++.....   .....+++|+|+ |++++++       +.|+.|||+++|++++
T Consensus       365 ~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~---~~~~~~svG~p~pg~~v~i~-------~~G~~GEl~vrg~~v~  434 (624)
T PRK12582        365 RMQALAVRTTGHRIPFYTGYGATETAPTTTGTHW---DTERVGLIGLPLPGVELKLA-------PVGDKYEVRVKGPNVT  434 (624)
T ss_pred             HHHHHHHhhcCCCceEEeccccccccceeecccC---CCCCCCCCCcCCCCcEEEEc-------cCCCceEEEEECCccc
Confidence            998863      3679999999999876653322   234567999999 8999986       3467899999999999


Q ss_pred             cccccCcchhhhcc-cCCceecCceEEE-c---CCCeEEEeccccccee-cCCeeccccceec
Q 014065          371 KGYKNNPEANKSAF-LFGWFHTGDIGYF-D---SDGYLHLVGRIKELIN-RGGNLHESISLFL  427 (431)
Q Consensus       371 ~gy~~~~~~~~~~~-~~g~~~TGD~~~~-~---~~g~l~~~gR~~d~i~-~~G~~i~~~~iE~  427 (431)
                      .||+++++.+++.| .+|||+|||+|++ |   ++|+|++.||+||+|| .+|++|+|.+||.
T Consensus       435 ~GY~~~p~~t~~~f~~dgw~~TGDlg~~~d~~~~~g~l~i~GR~~d~i~~~~G~~i~p~~iE~  497 (624)
T PRK12582        435 PGYHKDPELTAAAFDEEGFYRLGDAARFVDPDDPEKGLIFDGRVAEDFKLSTGTWVSVGTLRP  497 (624)
T ss_pred             ccccCCccchhhhcCccCCccccceEEecCCcCCCCceEEeccchhhEecCCCcEechHHHHH
Confidence            99999999998888 4799999999998 4   5699999999999998 5899999998863

>PLN03102 acyl-activating enzyme; Provisional

Probab=100.00  E-value=1.2e-58  Score=455.78  Aligned_cols=419  Identities=22%  Similarity=0.316  Sum_probs=325.7

Q ss_pred             ccHHHHHHHHHHhcCCcceEEecCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcEEE
Q 014065            4 VTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAA   83 (431)
Q Consensus         4 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v   83 (431)
                      .|+.+.|.+.++.+|+++|+.+.+ .++||+||.++++++|++|.+.|+++||+|+|+++|++++++++|||+++|++++
T Consensus        14 ~~~~~~l~~~~~~~p~~~Al~~~~-~~~Ty~eL~~~~~~~a~~L~~~Gl~~gd~Vai~~~n~~e~~~~~la~~~~G~~~v   92 (579)
T PLN03102         14 LTPITFLKRASECYPNRTSIIYGK-TRFTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNTPAMYEMHFAVPMAGAVLN   92 (579)
T ss_pred             ccHHHHHHHHHHhCCCCeEEEECC-cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEe
Confidence            578899999999999999998755 6999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCc-----ccccccccccc-------hhhhhhhccccccc-
Q 014065           84 PLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNI-----SHATATLLDAD-------SELTLSLAHSESDT-  150 (431)
Q Consensus        84 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~-------~~~~~~~~~~~~~~-  150 (431)
                      |++|.++.+++.++++.++++++|++++..+.+.+.......     ....+.+....       ....+......... 
T Consensus        93 pl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (579)
T PLN03102         93 PINTRLDATSIAAILRHAKPKILFVDRSFEPLAREVLHLLSSEDSNLNLPVIFIHEIDFPKRPSSEELDYECLIQRGEPT  172 (579)
T ss_pred             eccccCCHHHHHHHHhccCCeEEEEChhhHHHHHHHHhhccccccccCceEEEecccccccCCcccccCHHHHHhccCCC
Confidence            999999999999999999999999998776655554332210     01111111100       00000000000000 


Q ss_pred             cc---cccCCCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhc
Q 014065          151 NA---ISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAA  227 (431)
Q Consensus       151 ~~---~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~  227 (431)
                      ..   .......++++++++|||||||.||+|.++|.++............+...++++..+|++|..++.. .+.++..
T Consensus       173 ~~~~~~~~~~~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~-~~~~~~~  251 (579)
T PLN03102        173 PSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEMGTCPVYLWTLPMFHCNGWTF-TWGTAAR  251 (579)
T ss_pred             CcccccccccCCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHHHhhcCCCCCCeEEecCChhhhcchhH-HHHHHHh
Confidence            00   0011235689999999999999999999999997654444344445667788899999999988776 6677888


Q ss_pred             CCEEEeCCCCCCChhhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHhCCce
Q 014065          228 GAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPV  307 (431)
Q Consensus       228 G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~i  307 (431)
                      |+++++.+  .+++..+++.|+++++|++.++|+++..+.+..... ....++++.+++||+++++.+.+++++ +++++
T Consensus       252 g~~~v~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-~~~~~~~~~~~~gg~~~~~~~~~~~~~-~g~~i  327 (579)
T PLN03102        252 GGTSVCMR--HVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSLD-LSPRSGPVHVLTGGSPPPAALVKKVQR-LGFQV  327 (579)
T ss_pred             cCcEEeec--cCChHHHHHHHHHcCCeEEEeChHHHHHHHhCcccc-cCCcccceEEEECCCCCCHHHHHHHHH-cCCeE
Confidence            88888876  568889999999999999999999999998764322 223467888999999999999998865 69999


Q ss_pred             ecccCcccccCcccCCCCCCCC-----------CCCCCCccccccceEEEEC-CCCCcCCC--CceeeEEEeCCcccccc
Q 014065          308 LEAYAMTEATHLMSSNPLPEDG-----------PHKPGSVGRPVGQEIAILD-EIGVPQEG--GAKGEVCIRGPNVTKGY  373 (431)
Q Consensus       308 ~~~yg~tE~~~~~~~~~~~~~~-----------~~~~~~~G~~~~~~~~i~d-~~~~~~~~--~~~Gel~v~~~~~~~gy  373 (431)
                      ++.||+||+++.+........+           ....+..+.++ ..+.++| +.+++++.  ++.|||+++|+++++||
T Consensus       328 ~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~v~i~~~~~~~~v~~~~~~~GEl~v~g~~~~~GY  406 (579)
T PLN03102        328 MHAYGLTEATGPVLFCEWQDEWNRLPENQQMELKARQGVSILGL-ADVDVKNKETQESVPRDGKTMGEIVIKGSSIMKGY  406 (579)
T ss_pred             EeecCccccCccccccccccccccCCcccccccccCCCcccccc-cceEEeccccccccCCCCCCceEEEEECcchhhhh
Confidence            9999999998654432111100           01122222232 3466677 34666764  36799999999999999


Q ss_pred             ccCcchhhhcccCCceecCceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          374 KNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       374 ~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      +++++.+.+.|.+|||+|||+|++|+||++++.||.+|+||++|++|+|.|||.+.
T Consensus       407 ~~~~~~t~~~f~~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l  462 (579)
T PLN03102        407 LKNPKATSEAFKHGWLNTGDVGVIHPDGHVEIKDRSKDIIISGGENISSVEVENVL  462 (579)
T ss_pred             cCChhhhHhhhccCceecCceEEEcCCCeEEEEeccCcEEEECCEEECHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999863

>PLN03052 acetate--CoA ligase; Provisional

Probab=100.00  E-value=1.4e-58  Score=461.72  Aligned_cols=418  Identities=21%  Similarity=0.226  Sum_probs=323.6

Q ss_pred             ccHHH-HHHHHHHhcCCcceEEecCC-------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHH
Q 014065            4 VTLIG-LLNQVIDQFSSKRALSVSGK-------FDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAV   75 (431)
Q Consensus         4 ~tl~~-~l~~~a~~~p~~~a~~~~~~-------~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~   75 (431)
                      +|+.+ +|++++.++|+++|+++.+.       +++||+||.++++++|++|++.|+++||+|+++++|++++++++|||
T Consensus       174 ln~~~~~l~~~~~~~pd~~Ai~~~~e~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrVai~~pn~~e~via~LA~  253 (728)
T PLN03052        174 LNVAECCLTPKPSKTDDSIAIIWRDEGSDDLPVNRMTLSELRSQVSRVANALDALGFEKGDAIAIDMPMNVHAVIIYLAI  253 (728)
T ss_pred             eEHHHHHHHHHhccCCCCeEEEEECCCCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHH
Confidence            34444 55565567899999997542       47999999999999999999999999999999999999999999999


Q ss_pred             HHhCcEEEecCCCCCHHHHHHHHhcCCceEEEecCCch------hHHHHHHHhcCcccccccccccc---------hhhh
Q 014065           76 IRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGN------AAAQAAASKLNISHATATLLDAD---------SELT  140 (431)
Q Consensus        76 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~---------~~~~  140 (431)
                      +++|++++|++|.++.+++.+++++++++++|+++...      +....+......  ..+.+....         ....
T Consensus       254 ~~~Gav~vpi~p~~~~~~l~~rl~~~~~k~lit~d~~~~~gk~~~~~~~~~~~~~~--~~iv~~~~~~~~~~~~~~~~~~  331 (728)
T PLN03052        254 ILAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAKAP--KAIVLPADGKSVRVKLREGDMS  331 (728)
T ss_pred             HHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHhcCC--cEEEEeCCCCccccccccCCcc
Confidence            99999999999999999999999999999999987532      111121111110  011010000         0011


Q ss_pred             hhhcccccc----ccccccCCCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHHH
Q 014065          141 LSLAHSESD----TNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHG  216 (431)
Q Consensus       141 ~~~~~~~~~----~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  216 (431)
                      +........    ...........+++++|+|||||||.||+|+++|.+++..+......++++++|+++...|++|+++
T Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~~~~~l~~~d~~~~~~~l~w~~g  411 (728)
T PLN03052        332 WDDFLARANGLRRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWAHLDIRKGDIVCWPTNLGWMMG  411 (728)
T ss_pred             HHHHHhccccccccccccccccCCCCcEEEEecCCCCCCCceEEECchHHHHHHHHHHHhcCCCCCcEEEECCCcHHHhH
Confidence            111000000    0001111234689999999999999999999999998877666666678899999999999999999


Q ss_pred             HHHHHHHHHhcCCEEEeCCCCCCChhhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHH
Q 014065          217 MLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVIL  296 (431)
Q Consensus       217 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~  296 (431)
                      .+. ++.+|..|+++++.++ ..++..+++.++++++|++..+|++++.+.+.... ...+++++|.++++|++++++..
T Consensus       412 ~~~-v~~~L~~Gat~vl~~g-~p~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~~~-~~~dlssLr~i~s~Ge~l~~~~~  488 (728)
T PLN03052        412 PWL-VYASLLNGATLALYNG-SPLGRGFAKFVQDAKVTMLGTVPSIVKTWKNTNCM-AGLDWSSIRCFGSTGEASSVDDY  488 (728)
T ss_pred             HHH-HHHHHHhCCEEEEeCC-CCCCChHHHHHHHHCCCEEEECHHHHHHHHhcCCc-ccCChhheeEEEecCCCCCHHHH
Confidence            865 7899999999999864 34567899999999999999999999998776432 34568999999999999999999


Q ss_pred             HHHHHHhC-CceecccCcccccCcccCCCCCCCCCCCCCCccccc-cceEEEECCCCCcCCCCc--eeeEEEeCCc--cc
Q 014065          297 SRLEEAFG-APVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGA--KGEVCIRGPN--VT  370 (431)
Q Consensus       297 ~~~~~~~~-~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d~~~~~~~~~~--~Gel~v~~~~--~~  370 (431)
                      .++.+.++ .++.+.||+||+++.+.....  .....++++|+|. |++++|+|++|++++.|+  .|||+++++.  ..
T Consensus       489 ~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~--~~~~~~g~~g~p~~g~~v~v~d~~g~~v~~g~~~~GEL~v~~~~~~~~  566 (728)
T PLN03052        489 LWLMSRAGYKPIIEYCGGTELGGGFVTGSL--LQPQAFAAFSTPAMGCKLFILDDSGNPYPDDAPCTGELALFPLMFGAS  566 (728)
T ss_pred             HHHHHhcCCCCeEeeccChhhCcccccCCC--CCCCCCCccccCCCCceEEEECCCCCCCCCCCCceEEEEEeCCCCCCC
Confidence            88888775 579999999999865443221  1234567899998 899999999999999885  6999998653  33


Q ss_pred             cccccCcchhhhccc-----CC--ceecCceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          371 KGYKNNPEANKSAFL-----FG--WFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       371 ~gy~~~~~~~~~~~~-----~g--~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      .+|+++. ....-|.     .|  ||+|||++++|+||+++++||.||+||++|.+|+|.|||.+.
T Consensus       567 ~~~~~~~-~~~~yf~~~p~~~g~~~~~tGDl~~~d~dG~l~i~GR~Dd~I~~~G~rI~~~EIE~~l  631 (728)
T PLN03052        567 STLLNAD-HYKVYFKGMPVFNGKILRRHGDIFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERVC  631 (728)
T ss_pred             ccccCch-hhhhhhhcCCCCCCCEEEecCceEEECCCCeEEEEecCCCEEeeCCEEeCHHHHHHHH
Confidence            4566543 2222221     23  899999999999999999999999999999999999999873

>PRK03584 acetoacetyl-CoA synthetase; Provisional

Probab=100.00  E-value=9.1e-59  Score=463.39  Aligned_cols=418  Identities=18%  Similarity=0.183  Sum_probs=325.5

Q ss_pred             cHHHHHHHHHHhcCCcceEEecC----CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCc
Q 014065            5 TLIGLLNQVIDQFSSKRALSVSG----KFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARA   80 (431)
Q Consensus         5 tl~~~l~~~a~~~p~~~a~~~~~----~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~   80 (431)
                      |+.+.+.++  .+|+++|+++.+    .+++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|+
T Consensus        87 n~~~~~~~~--~~~~~~Al~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~v~~~lA~~~~Ga  164 (655)
T PRK03584         87 NYAENLLRH--RRDDRPAIIFRGEDGPRRELSWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVAMLATASLGA  164 (655)
T ss_pred             eHHHHhhcc--CCCCCeEEEEECCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCc
Confidence            455555442  579999999753    26899999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHHHHhcCCceEEEecCCch---------hHHHHHHHhcCcccccccccccc---------hhhhhh
Q 014065           81 TAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGN---------AAAQAAASKLNISHATATLLDAD---------SELTLS  142 (431)
Q Consensus        81 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~  142 (431)
                      +++|+++.++.+++.++++.++++++|+++...         +.+.............+.+....         ....+.
T Consensus       165 v~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  244 (655)
T PRK03584        165 IWSSCSPDFGVQGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRAALPSLEHVVVVPYLGPAAAAAALPGALLWE  244 (655)
T ss_pred             EEEeeCCCCCHHHHHHHHHHcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEecCCCcccccccCCcccHH
Confidence            999999999999999999999999999987532         22222222211111111111000         000111


Q ss_pred             hccccccccccccCCCCCCCeEEEEeccCCCCCCCeeeechHHHHH-HHHHHHHHhcCCCCCeEEEecChhhHHHHHHHH
Q 014065          143 LAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAA-SVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGL  221 (431)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  221 (431)
                      ..................+++++++|||||||.||+|+++|.+++. .+......+++.++|++++..++.|.+..  .+
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~--~~  322 (655)
T PRK03584        245 DFLAPAEAAELEFEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHCDLGPGDRFFWYTTCGWMMWN--WL  322 (655)
T ss_pred             HHhhccccCCCCceecCCCCcEEEEecCCCCCCCceEEECccHHHHHHHHHHHHhcCCCCCCEEEEcCCchHHhHH--HH
Confidence            1000001111122334568999999999999999999999998754 45556667789999999999998887543  36


Q ss_pred             HHHHhcCCEEEeCCCC--CCChhhHHHHHHHhcceeeecchHHHHHHHhcccC-CCCCCCCCccEEEeccCCCcHHHHHH
Q 014065          222 LSSFAAGAAVTLPAAG--RFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVA-KPEPVYPKLRFIRSCSASLAPVILSR  298 (431)
Q Consensus       222 ~~~l~~G~~~~~~~~~--~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~-~~~~~~~~l~~i~~~g~~~~~~~~~~  298 (431)
                      +.+|..|+++++.++.  .+++..+++.++++++|++..+|++++.+.+.... ....+++++|.++++|++++++++++
T Consensus       323 ~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~~Ge~l~~~~~~~  402 (655)
T PRK03584        323 VSGLLVGATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKAGLVPGETHDLSALRTIGSTGSPLPPEGFDW  402 (655)
T ss_pred             HHHHHcCCEEEEeCCCCCCCCHHHHHHHHHHHCCEEEEcCHHHHHHHHhcCCCccccCChhheEEEEEecCCCCHHHHHH
Confidence            7899999999987532  34789999999999999999999999998764321 12345789999999999999999999


Q ss_pred             HHHHh--CCceecccCcccccCcccCCCCCCCCCCCCCCccccc-cceEEEECCCCCcCCCCceeeEEEeCC--cccccc
Q 014065          299 LEEAF--GAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGP--NVTKGY  373 (431)
Q Consensus       299 ~~~~~--~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d~~~~~~~~~~~Gel~v~~~--~~~~gy  373 (431)
                      +.+.+  ++.+.+.||+||++..+....  ......++++|.|. |++++|+|++|+++ .|+.|||++++|  +++.||
T Consensus       403 ~~~~~~~~~~~~~~yG~TE~~~~~~~~~--~~~~~~~g~~g~p~~g~~~~ivd~~g~~~-~g~~GeL~v~gp~p~~~~gy  479 (655)
T PRK03584        403 VYEHVKADVWLASISGGTDICSCFVGGN--PLLPVYRGEIQCRGLGMAVEAWDEDGRPV-VGEVGELVCTKPFPSMPLGF  479 (655)
T ss_pred             HHHHhCCCceEEeccChHhhhcccccCC--CCCCcCCCccCCCcCCceeEEECCCCCCC-CCCceEEEEccCCCCCccee
Confidence            99988  478999999999865443321  11234568899998 89999999999999 789999999996  789999


Q ss_pred             ccCcchhh--hcc---cCCceecCceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          374 KNNPEANK--SAF---LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       374 ~~~~~~~~--~~~---~~g~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      +++++.++  ..+   .+|||+|||+|++|+||+++++||.||+||++|++|+|.|||.+.
T Consensus       480 ~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~Ik~~G~rI~p~EIE~~l  540 (655)
T PRK03584        480 WNDPDGSRYRDAYFDTFPGVWRHGDWIEITEHGGVVIYGRSDATLNRGGVRIGTAEIYRQV  540 (655)
T ss_pred             eCCCccchHHHhhhccCCCEeecCCeEEECCCCeEEEEeeccCeeecCcEEECHHHHHHHH
Confidence            99887543  222   258999999999999999999999999999999999999999864

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=1.1e-59  Score=536.92  Aligned_cols=408  Identities=22%  Similarity=0.336  Sum_probs=349.0

Q ss_pred             cccHHHHHHHHHHhcCCcceEEecCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcEE
Q 014065            3 GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATA   82 (431)
Q Consensus         3 ~~tl~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~   82 (431)
                      ..++.++|+++++++|+++|+++.+ +++||+||+++++++|+.|.+.|+++|++|+++++|+++++++++||+++|+++
T Consensus      3094 ~~~~~~l~~~~a~~~p~~~Av~~~~-~~lTY~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~vv~~lavl~aGa~~ 3172 (3956)
T PRK12467       3094 ERLVHQLIEAQVARTPEAPALVFGD-QQLSYAELNRRANRLAHRLIAIGVGPDVLVGVAVERSVEMIVALLAVLKAGGAY 3172 (3956)
T ss_pred             cccHHHHHHHHHHhCCCcceEeeCC-cccCHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeCCCHHHHHHHHHHHhhCcEe
Confidence            3589999999999999999999865 699999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCcccccccccccchhhhhhhccccccccccccCCCCCCC
Q 014065           83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSD  162 (431)
Q Consensus        83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (431)
                      +|++|.++.+++.++++.+++++++++....+......     ....+.+...    ...     ......+.....+++
T Consensus      3173 vpld~~~p~~rl~~il~~~~~~~vlt~~~~~~~~~~~~-----~~~~~~~~~~----~~~-----~~~~~~~~~~~~~~~ 3238 (3956)
T PRK12467       3173 VPLDPEYPRERLAYMIEDSGVKLLLTQAHLLEQLPAPA-----GDTALTLDRL----DLN-----GYSENNPSTRVMGEN 3238 (3956)
T ss_pred             ecCCCCChHHHHHHHHhCCCCcEEEechhhhhhccccc-----CCceeeecch----hhc-----ccCCCCCcccCCCCc
Confidence            99999999999999999999999999876433221100     0001101000    000     111112223456789


Q ss_pred             eEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCCCCCCChh
Q 014065          163 VALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSAS  242 (431)
Q Consensus       163 ~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~  242 (431)
                      +++++|||||||.||||+++|+++.+.+......+++.++++++...|++|..+... ++.+|..|+++++++...+++.
T Consensus      3239 ~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~-~~~~L~~G~~l~i~~~~~~~~~ 3317 (3956)
T PRK12467       3239 LAYVIYTSGSTGKPKGVGVRHGALANHLCWIAEAYELDANDRVLLFMSFSFDGAQER-FLWTLICGGCLVVRDNDLWDPE 3317 (3956)
T ss_pred             eEEEEEccCCCCCcceeeehhHHHHHHHHHHHHhcCCCcCCEEEEecCccHhHHHHH-HHHHHhCCCEEEECCcccCCHH
Confidence            999999999999999999999999999999999999999999999999999988766 8999999999999884347999


Q ss_pred             hHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHh-CCceecccCcccccCccc
Q 014065          243 TFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVLEAYAMTEATHLMS  321 (431)
Q Consensus       243 ~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~-~~~i~~~yg~tE~~~~~~  321 (431)
                      .+++.|+++++|++.++|++++.+++...   ..+++++|.+++|||+++++..+.+.+.+ ++.++|.||+||++..++
T Consensus      3318 ~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~---~~~~~~lr~~~~gGe~~~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~ 3394 (3956)
T PRK12467       3318 ELWQAIHAHRISIACFPPAYLQQFAEDAG---GADCASLDIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTVT 3394 (3956)
T ss_pred             HHHHHHHHcCCEEEEcCHHHHHHHHhccc---ccCCCCceEEEEecCCCCHHHHHHHHHhCCCCEEEeCcccchhEeeeE
Confidence            99999999999999999999999876532   23478899999999999999999999887 678999999999997766


Q ss_pred             CCCCCCCC--CCCCCCccccc-cceEEEECCCCCcCCCCceeeEEEeCCccccccccCcchhhhcccC--------Ccee
Q 014065          322 SNPLPEDG--PHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF--------GWFH  390 (431)
Q Consensus       322 ~~~~~~~~--~~~~~~~G~~~-~~~~~i~d~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~--------g~~~  390 (431)
                      ......+.  .....++|+|+ |++++|+|+++++++.|+.|||+|+|+++++||+++++.+++.|..        +||+
T Consensus      3395 ~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~~~~vp~G~~GEL~i~G~~v~~GY~~~~~~T~~~F~~~p~~~~g~r~yr 3474 (3956)
T PRK12467       3395 LWKCGGDAVCEAPYAPIGRPVAGRSIYVLDGQLNPVPVGVAGELYIGGVGLARGYHQRPSLTAERFVADPFSGSGGRLYR 3474 (3956)
T ss_pred             EEecccccccCCCCCCCccccCCCEEEEECCCCCCCCCCCCceEEEcchhhhhhccCCcccchhhccCCCCCCCCceeec
Confidence            54332111  23346899999 8999999999999999999999999999999999999999998842        3799


Q ss_pred             cCceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          391 TGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       391 TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      |||+|++++||.++++||+||+||++|++|+|.|||.+.
T Consensus      3475 TGDl~~~~~dG~l~~~GR~d~~iki~G~rIe~~EIE~~l 3513 (3956)
T PRK12467       3475 TGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEIEARL 3513 (3956)
T ss_pred             cchhheecCCCcEEEeccccceEeeceEeecHHHHHHHH
Confidence            999999999999999999999999999999999999864

>PRK06164 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.9e-58  Score=452.61  Aligned_cols=419  Identities=27%  Similarity=0.354  Sum_probs=337.6

Q ss_pred             ccHHHHHHHHHHhcCCcceEEecCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcEEE
Q 014065            4 VTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAA   83 (431)
Q Consensus         4 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v   83 (431)
                      .++.++|++.++.+|+++|++. +++++||+||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++|++++
T Consensus        10 ~~l~~~l~~~a~~~p~~~a~~~-~~~~~Ty~~L~~~~~~~a~~L~~~g~~~g~~V~i~~~n~~~~~~~~la~~~~G~~~v   88 (540)
T PRK06164         10 DTLASLLDAHARARPDAVALID-EDRPLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFLACARLGATVI   88 (540)
T ss_pred             CCHHHHHHHHHHhCCCCeEEec-CCCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEE
Confidence            5799999999999999999985 447999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHhcCCceEEEecCCchhH-HHHHHHhcC----c-ccccccccccchhhhh----h---hcccccc-
Q 014065           84 PLNAAYTPDEFEFYLSDSESKLLLTPAEGNAA-AQAAASKLN----I-SHATATLLDADSELTL----S---LAHSESD-  149 (431)
Q Consensus        84 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~-~~~~~~~~~----~-~~~~~~~~~~~~~~~~----~---~~~~~~~-  149 (431)
                      |+++..+.+++.++++.+++++++++.+.... .........    . ....+...+.......    .   ....... 
T Consensus        89 ~l~~~~~~~~l~~~i~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (540)
T PRK06164         89 AVNTRYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDAADATPAPAPGARVQLFALPDPA  168 (540)
T ss_pred             ecCCCCCcHHHHHHHHhcCccEEEEccccccccHHHHhhcccccccCCcceEEEeccCcccCCCCCcccccccccccccC
Confidence            99999999999999999999999998764321 111111000    0 0001111100000000    0   0000000 


Q ss_pred             -ccccccCCCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcC
Q 014065          150 -TNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAG  228 (431)
Q Consensus       150 -~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G  228 (431)
                       ...........+++++++|||||||.||+|.++|.++..+.......+++.++++++..+|++|.+++.. ++.++..|
T Consensus       169 ~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-~~~~l~~G  247 (540)
T PRK06164        169 PPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAYGYDPGAVLLAALPFCGVFGFST-LLGALAGG  247 (540)
T ss_pred             CcccccccCCCCCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEcCCchhHHHHHH-HHHHHhcC
Confidence             0000112234688999999999999999999999999999888888889999999999999999999975 89999999


Q ss_pred             CEEEeCCCCCCChhhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEecc-CCCcHHHHHHHHHHhCCce
Q 014065          229 AAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCS-ASLAPVILSRLEEAFGAPV  307 (431)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g-~~~~~~~~~~~~~~~~~~i  307 (431)
                      +++++.+  .+++..+++.++++++|+++++|+++..+.+...  ...++++++.+..+| .+...+..+++.+. ++++
T Consensus       248 ~~~~~~~--~~~~~~~~~~l~~~~~t~~~~~p~~l~~l~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~  322 (540)
T PRK06164        248 APLVCEP--VFDAARTARALRRHRVTHTFGNDEMLRRILDTAG--ERADFPSARLFGFASFAPALGELAALARAR-GVPL  322 (540)
T ss_pred             ceEEecC--CCCHHHHHHHHHHhCCeeecCCHHHHHHHHHhhc--ccCCCcceeeeeeccCCcchHHHHHHHhhc-CCce
Confidence            9999887  6889999999999999999999999999988722  234578888876665 55566666666654 8999


Q ss_pred             ecccCcccccCcccCCCCCCCCCCCCCCccccc--cceEEEEC-CCCCcCCCCceeeEEEeCCccccccccCcchhhhcc
Q 014065          308 LEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV--GQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAF  384 (431)
Q Consensus       308 ~~~yg~tE~~~~~~~~~~~~~~~~~~~~~G~~~--~~~~~i~d-~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~  384 (431)
                      ++.||+||++.+++.............+.|.|.  ++.++++| +++++++.|+.||||++|++++.||+++++.++..|
T Consensus       323 ~~~YG~tE~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~  402 (540)
T PRK06164        323 TGLYGSSEVQALVALQPATDPVSVRIEGGGRPASPEARVRARDPQDGALLPDGESGEIEIRAPSLMRGYLDNPDATARAL  402 (540)
T ss_pred             ecceeeccccceeeccCCCCCCcceeccCccccCCCeEEEEecCCCCcCCCCCCeeEEEEecccccccccCCchhhhhcc
Confidence            999999999987666543333334445678876  58999999 568999999999999999999999999999998887


Q ss_pred             c-CCceecCceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          385 L-FGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       385 ~-~g~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      . +|||+|||+|++|++|.+++.||.+|+||++|++|+|.|||.+.
T Consensus       403 ~~~~~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~i~p~eIE~~l  448 (540)
T PRK06164        403 TDDGYFRTGDLGYTRGDGQFVYQTRMGDSLRLGGFLVNPAEIEHAL  448 (540)
T ss_pred             cCCCceecCCeEEEcCCceEEEEeecCCeEEECCEEcCHHHHHHHH
Confidence            4 68999999999999999999999999999999999999999863

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase

Probab=100.00  E-value=1.2e-58  Score=460.49  Aligned_cols=417  Identities=19%  Similarity=0.190  Sum_probs=318.4

Q ss_pred             cHHHHHHHHHHhcCCcceEEecCC----CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCc
Q 014065            5 TLIGLLNQVIDQFSSKRALSVSGK----FDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARA   80 (431)
Q Consensus         5 tl~~~l~~~a~~~p~~~a~~~~~~----~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~   80 (431)
                      |+.+.+.+   ..++++|+++.+.    +++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|+
T Consensus        88 n~~~~~~~---~~~~~~a~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~~n~~e~~~~~lA~~~~Ga  164 (652)
T TIGR01217        88 NYAENLLR---AAGTEPALLYVDETHEPAPVTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAMLATASVGA  164 (652)
T ss_pred             eHHHHHhc---cCCCCeEEEEECCCCCeeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCe
Confidence            44554444   2578999887432    5899999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHHHHhcCCceEEEecCCc---------hhHHHHHHHhcCcccccccccc-c---------chhhhh
Q 014065           81 TAAPLNAAYTPDEFEFYLSDSESKLLLTPAEG---------NAAAQAAASKLNISHATATLLD-A---------DSELTL  141 (431)
Q Consensus        81 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~---------~~~~~~~~~~~~~~~~~~~~~~-~---------~~~~~~  141 (431)
                      +++|+++.++.+++.+++++++++++|+++..         .+.+.+...........+.+.. .         .....+
T Consensus       165 v~vp~~~~~~~~~l~~~l~~~~~k~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  244 (652)
T TIGR01217       165 IWSSCSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELPTLRAVVHIPYLGPRETEAPKIDGALDL  244 (652)
T ss_pred             EEEecCCCCCHHHHHHHHHhcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEeCCCCcccccccccCcccH
Confidence            99999999999999999999999999998753         2333333332221111111110 0         000011


Q ss_pred             hhccccccccccccCCCCCCCeEEEEeccCCCCCCCeeeechHHHHH-HHHHHHHHhcCCCCCeEEEecChhhHHHHHHH
Q 014065          142 SLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAA-SVSNIKSVYKLTESDSTVIVLPLFHVHGMLAG  220 (431)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  220 (431)
                      ...................+++++++|||||||.||+|+++|.+++. ........+++.++|++++..|+.|.+..  .
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~--~  322 (652)
T TIGR01217       245 EDFTAAAQAAELVFEQLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHCDLGPGDRLFYYTTTGWMMWN--W  322 (652)
T ss_pred             HHHHhcccCCCCCceecCCCCCEEEEEcCCCCCCCCeEEecccHHHHHHHHHHHhccCCCCCcEEEEeCCcchhhhH--H
Confidence            11000000111111234568999999999999999999999998654 44455566789999999999999987532  2


Q ss_pred             HHHHHhcCCEEEeCCCCC--CChhhHHHHHHHhcceeeecchHHHHHHHhccc-CCCCCCCCCccEEEeccCCCcHHHHH
Q 014065          221 LLSSFAAGAAVTLPAAGR--FSASTFWQDMIKYNATWYTAVPTIHQIVLDRHV-AKPEPVYPKLRFIRSCSASLAPVILS  297 (431)
Q Consensus       221 ~~~~l~~G~~~~~~~~~~--~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~-~~~~~~~~~l~~i~~~g~~~~~~~~~  297 (431)
                      ++.+|..|+++++.++..  .++..+++.++++++|++...|.+++.+..... .....+++++|.+++||++++++.++
T Consensus       323 ~~~~l~~G~t~vl~~g~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~  402 (652)
T TIGR01217       323 LVSGLATGATLVLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKAGVHPARTHDLSALQCVASTGSPLPPDGFR  402 (652)
T ss_pred             HHHHHhcCcEEEEECCCCCCCCchHHHHHHHHhCCeEEecCHHHHHHHHhcCCCccccCChhheeEEEeecCCCCHHHHH
Confidence            568999999999876322  378899999999999999888877777654321 11234689999999999999999999


Q ss_pred             HHHHHhC--CceecccCcccccCcccCCCCCCCCCCCCCCccccc-cceEEEECCCCCcCCCCceeeEEEeCC--ccccc
Q 014065          298 RLEEAFG--APVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGP--NVTKG  372 (431)
Q Consensus       298 ~~~~~~~--~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d~~~~~~~~~~~Gel~v~~~--~~~~g  372 (431)
                      ++.+.++  +.+.+.||+||++.......  .......+++|.|. |.+++|+|++|+++ .|+.|||++++|  +++.|
T Consensus       403 ~~~~~~~~~~~~~~~yG~TE~~~~~~~~~--~~~~~~~g~~g~p~~g~~v~ivd~~g~~~-~g~~GEl~v~gp~p~~~~g  479 (652)
T TIGR01217       403 WVYDEIKADVWLASISGGTDICSCFAGAN--PTLPVHIGEIQAPGLGTAVQSWDPEGKPV-TGEVGELVCTNPMPSMPIR  479 (652)
T ss_pred             HHHHHhCCCceEEeccCHHHHhccccCCC--CCCCCcCCccCCCcCCCceEEECCCCCCC-CCCccEEEEecCCCccccc
Confidence            9998885  45678999999754333221  11234467889998 89999999999998 589999999996  68899


Q ss_pred             cccCcchhh--hc-c--cCCceecCceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          373 YKNNPEANK--SA-F--LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       373 y~~~~~~~~--~~-~--~~g~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      |+++++.++  +. |  .+|||+|||+|++|+||++++.||.||+||++|++|+|.|||.+.
T Consensus       480 y~~~~~~t~~~~~~~~~~~g~~~tGDlg~~d~dG~l~i~GR~dd~I~~~G~ri~p~EIE~~l  541 (652)
T TIGR01217       480 FWNDPDGSKYRDAYFDTYPGVWRHGDWITLTPRGGIVIHGRSDSTLNPQGVRMGSAEIYNAV  541 (652)
T ss_pred             eeCCCccchhHHhhhcCCCCEEEcCCcEEECCCCcEEEEecccCeEecCCEEcCHHHHHHHH
Confidence            999987543  22 2  268999999999999999999999999999999999999999863

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.

>PRK09088 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.1e-58  Score=448.90  Aligned_cols=397  Identities=25%  Similarity=0.365  Sum_probs=331.4

Q ss_pred             HHHHHhcCCcceEEec-CCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcEEEecCCCC
Q 014065           11 NQVIDQFSSKRALSVS-GKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAY   89 (431)
Q Consensus        11 ~~~a~~~p~~~a~~~~-~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~   89 (431)
                      +.+++.+|+++|+.+. +++++||.||.++++++|++|.+.|+++||+|+++++|+++++++++||+++|++++|+++.+
T Consensus         2 ~~~a~~~p~~~a~~~~~~~~~~ty~~l~~~v~~~a~~l~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~~~~~~   81 (488)
T PRK09088          2 AFHARLQPQRLAAVDLALGRRWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVPLNWRL   81 (488)
T ss_pred             chhhhhCCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEEeeCccC
Confidence            4577889999999863 457999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCcccccccccccchhhhhhhccccccccccccCCCCCCCeEEEEec
Q 014065           90 TPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHT  169 (431)
Q Consensus        90 ~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~T  169 (431)
                      +.+++.++++.++++++|+++......        .  ....+.    .. .....   ............+++++++||
T Consensus        82 ~~~~~~~~~~~~~~~~ii~~~~~~~~~--------~--~~~~~~----~~-~~~~~---~~~~~~~~~~~~~~~~~i~~T  143 (488)
T PRK09088         82 SASELDALLQDAEPRLLLGDDAVAAGR--------T--DVEDLA----AF-IASAD---ALEPADTPSIPPERVSLILFT  143 (488)
T ss_pred             CHHHHHHHHHhCCCCEEEEcchhhccc--------c--cccchh----hh-hhhcc---ccccccCCCCCCCCceEEEeC
Confidence            999999999999999999987533210        0  000000    00 00000   000111123356789999999


Q ss_pred             cCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCCCCCCChhhHHHHHH
Q 014065          170 SGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMI  249 (431)
Q Consensus       170 SGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~  249 (431)
                      |||||.||+|.++|.++...+..+........++++++.+|++|.+++...+..++..|+++++.+  .+++..++..+.
T Consensus       144 SGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~g~~~~~~~--~~~~~~~~~~~~  221 (488)
T PRK09088        144 SGTSGQPKGVMLSERNLQQTAHNFGVLGRVDAHSSFLCDAPMFHIIGLITSVRPVLAVGGSILVSN--GFEPKRTLGRLG  221 (488)
T ss_pred             CCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEcC--CCCHHHHHHHHH
Confidence            999999999999999998887777777778899999999999999999888888999999999876  678888888886


Q ss_pred             H--hcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHhCCceecccCcccccCcccCCCCCC
Q 014065          250 K--YNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPE  327 (431)
Q Consensus       250 ~--~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~  327 (431)
                      +  +++|.++.+|++++.+.+..... ...++++|.+++||++++.+..+.+.+. ++++++.||+||++..........
T Consensus       222 ~~~~~~t~~~~~P~~~~~l~~~~~~~-~~~~~~l~~~~~gG~~~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~~  299 (488)
T PRK09088        222 DPALGITHYFCVPQMAQAFRAQPGFD-AAALRHLTALFTGGAPHAAEDILGWLDD-GIPMVDGFGMSEAGTVFGMSVDCD  299 (488)
T ss_pred             hhccCCcEEeeHHHHHHHHHhCcCcC-ccccccceEEEecCCCCCHHHHHHHHHh-CCceeeeecccccccccccCCCcc
Confidence            4  78999999999999987654322 2346899999999999999988887754 899999999999987654332222


Q ss_pred             CCCCCCCCccccc-cceEEEECCCCCcCCCCceeeEEEeCCccccccccCcchhhhccc-CCceecCceEEEcCCCeEEE
Q 014065          328 DGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFL-FGWFHTGDIGYFDSDGYLHL  405 (431)
Q Consensus       328 ~~~~~~~~~G~~~-~~~~~i~d~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~g~~~TGD~~~~~~~g~l~~  405 (431)
                      .....++++|+|. +++++|+|+++++++.|+.|||+++|++++.||+++++.+++.+. +|||+|||+|++|++|.+++
T Consensus       300 ~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i  379 (488)
T PRK09088        300 VIRAKAGAAGIPTPTVQTRVVDDQGNDCPAGVPGELLLRGPNLSPGYWRRPQATARAFTGDGWFRTGDIARRDADGFFWV  379 (488)
T ss_pred             cccccCCccccCCCCcEEEEECCCCCCCcCCCceEEEEECCccchhhcCChhhhhhhhcCCCCeeecceEEEcCCCcEEE
Confidence            2234567899999 799999999999999999999999999999999999988887774 79999999999999999999


Q ss_pred             ecccccceecCCeeccccceeccc
Q 014065          406 VGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       406 ~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      .||.+|+|+.+|.+|+|.+||.+.
T Consensus       380 ~GR~~d~i~~~G~~i~~~~iE~~l  403 (488)
T PRK09088        380 VDRKKDMFISGGENVYPAEIEAVL  403 (488)
T ss_pred             eccccceEEeCCEEECHHHHHHHH
Confidence            999999999999999999999853

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated

Probab=100.00  E-value=3.2e-58  Score=449.03  Aligned_cols=415  Identities=26%  Similarity=0.337  Sum_probs=344.8

Q ss_pred             cHHHHHHHHHHhcCCcceEEecCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcEEEe
Q 014065            5 TLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAP   84 (431)
Q Consensus         5 tl~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~   84 (431)
                      ++.++|+..++++|+++|+.+.+ +++||+||.++++++|++|++.|+++||+|+++++|+++++++++||+++|++++|
T Consensus         1 ~~~~~~~~~~~~~p~~~a~~~~~-~~~ty~~l~~~v~~~a~~l~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~   79 (515)
T TIGR03098         1 LLHHLLEDAAARLPDATALVHHD-RTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVP   79 (515)
T ss_pred             CHHHHHHHHHHHCCCCeEEEECC-ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCEEEEe
Confidence            47899999999999999999765 69999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCcccccccccccc-------hhhhhhhccccccccccccCC
Q 014065           85 LNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDAD-------SELTLSLAHSESDTNAISKLT  157 (431)
Q Consensus        85 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~  157 (431)
                      +++..+.+++..+++.+++++++++.+..+.+.............+.+.+..       ....+.......  .......
T Consensus        80 l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  157 (515)
T TIGR03098        80 INPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALPGCHDLRTLILVGEPAHASEGGGESPSWPKLLALG--DADPPHP  157 (515)
T ss_pred             CCCCCCHHHHHHHHHcCCCeEEEEccchhhhhHhhhhcccccceEEEecCcccccCCccccccHHHhhccc--cccccCC
Confidence            9999999999999999999999998876554443332211111111111110       000111111000  0111223


Q ss_pred             CCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCCCC
Q 014065          158 NDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAG  237 (431)
Q Consensus       158 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~  237 (431)
                      ...+++++++|||||||.||+|.++|.++..++......+++..+++++..+|++|.+++.. ++.++..|+++++.+  
T Consensus       158 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~--  234 (515)
T TIGR03098       158 VIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYLENRPDDRLLAVLPLSFDYGFNQ-LTTAFYVGATVVLHD--  234 (515)
T ss_pred             CCcCCeEEEEECCCCCCCCceEEEecHHHHHHHHHHHHHhCCCcccEEEEECchhhHhHHHH-HHHHHHcCCEEEEcC--
Confidence            34578999999999999999999999999988888888888999999999999999999875 889999999999986  


Q ss_pred             CCChhhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHh-CCceecccCcccc
Q 014065          238 RFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVLEAYAMTEA  316 (431)
Q Consensus       238 ~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~-~~~i~~~yg~tE~  316 (431)
                      .+++..+++.++++++|++.++|+++..+.+....  ..+++++|.++++|+++++++.+.+++.+ ++.+++.||+||+
T Consensus       235 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--~~~~~~l~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~  312 (515)
T TIGR03098       235 YLLPRDVLKALEKHGITGLAAVPPLWAQLAQLDWP--ESAAPSLRYLTNSGGAMPRATLSRLRSFLPNARLFLMYGLTEA  312 (515)
T ss_pred             CCCHHHHHHHHHHcCCceEecChHHHHHHHhcccC--CCCccceEEEEecCCcCCHHHHHHHHHHCCCCeEeeeeccccc
Confidence            67899999999999999999999999998765322  23467999999999999999999999988 7889999999998


Q ss_pred             cCcccCCCCCCCCCCCCCCccccc-cceEEEECCCCCcCCCCceeeEEEeCCccccccccCcchhhhccc----------
Q 014065          317 THLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFL----------  385 (431)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~----------  385 (431)
                      +.......  ......++++|+|+ +++++++|+++++++.|+.|||+++|+.++.||+++++.+...|.          
T Consensus       313 ~~~~~~~~--~~~~~~~~~vG~~~~~~~~~i~~~~~~~~~~~~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~~  390 (515)
T TIGR03098       313 FRSTYLPP--EEVDRRPDSIGKAIPNAEVLVLREDGSECAPGEEGELVHRGALVAMGYWNDPEKTAERFRPLPPRPGELH  390 (515)
T ss_pred             cceEeccc--ccccCCCCCcceecCCCEEEEECCCCCCCCCCCceEEEEcCchhhccccCCchhhhhhhhccCCcccccc
Confidence            76544322  22245678999999 899999999999999999999999999999999998887765543          


Q ss_pred             --CCceecCceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          386 --FGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       386 --~g~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                        ++|++|||+|++|++|++++.||.+|+|+.+|.+|+|.|||.+-
T Consensus       391 ~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eiE~~l  436 (515)
T TIGR03098       391 LPELAVWSGDTVRRDEEGFLYFVGRRDEMIKTSGYRVSPTEVEEVA  436 (515)
T ss_pred             ccccceeccceEEEcCCceEEEEeccccceecCCEEeCHHHHHHHH
Confidence              24899999999999999999999999999999999999999753

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family

Probab=100.00  E-value=3.8e-58  Score=447.13  Aligned_cols=416  Identities=24%  Similarity=0.348  Sum_probs=343.7

Q ss_pred             HHHHHHHH-HHhcCCcceEEecCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcEEEe
Q 014065            6 LIGLLNQV-IDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAP   84 (431)
Q Consensus         6 l~~~l~~~-a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~   84 (431)
                      -.++++++ ++.+||++|++..+ ..+||.||.++++++|++|.+.|+++|++|+++++|+++++++++||+++|++++|
T Consensus         6 ~~~~~~~~~~~~~p~~~a~~~~~-~~~ty~~l~~~~~~~a~~L~~~g~~~g~~v~l~~~~~~~~~~~~~a~~~~G~~~v~   84 (508)
T TIGR02262         6 AEDLLDRNVVEGRGGKTAFIDDI-SSLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPVA   84 (508)
T ss_pred             HHHHHHHHHhcccCCceEEEeCC-ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEee
Confidence            34566665 67799999998654 79999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCccccccccccc-chhhhhhhccccccccccccCCCCCCCe
Q 014065           85 LNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDA-DSELTLSLAHSESDTNAISKLTNDPSDV  163 (431)
Q Consensus        85 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (431)
                      +++..+.+++.++++.++++.++++.+..+.+.+...........+..... .....+..... ............++++
T Consensus        85 l~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  163 (508)
T TIGR02262        85 LNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALGKSPHLEHRVVVGRPEAGEVQLAELLA-TESEQFKPAATQADDP  163 (508)
T ss_pred             ccCCCCHHHHHHHHHhcCCeEEEEchhhHHHHHHHHhcCCCccEEEEeCCCCcccccHHHHhh-cCCCccCCCCCCCCCc
Confidence            999999999999999999999999987666555443322211111111110 00001110000 0011112233456899


Q ss_pred             EEEEeccCCCCCCCeeeechHHHHHHHHH-HHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCCCCCCChh
Q 014065          164 ALFLHTSGTTSRPKGVPLTQNNLAASVSN-IKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSAS  242 (431)
Q Consensus       164 ~~i~~TSGtTG~pK~v~~s~~~l~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~  242 (431)
                      ++++|||||||.||+|.++|.++...+.. ....++++++++++..+|++|.+++...++.++..|+++++.+. .+++.
T Consensus       164 a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~-~~~~~  242 (508)
T TIGR02262       164 AFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTLGIREDDVVFSAAKLFFAYGLGNALTFPMSVGATTVLMGE-RPTPD  242 (508)
T ss_pred             EEEEeCCCCCCCCcEEEEechhHHHHHHHHhHHhcCCCCCCEEEEcCchHHHHHHHHHHHHHHHcCceEEEeCC-CCCHH
Confidence            99999999999999999999999877665 45666889999999999999999998778889999999988764 46899


Q ss_pred             hHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHhCCceecccCcccccCcccC
Q 014065          243 TFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSS  322 (431)
Q Consensus       243 ~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~  322 (431)
                      .+++.|++++++.+.++|.++..++...... .....++|.++++|+++++++.+.|.+.+++++++.||+||++.+...
T Consensus       243 ~~~~~i~~~~~t~~~~~P~~~~~~~~~~~~~-~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~  321 (508)
T TIGR02262       243 AVFDRLRRHQPTIFYGVPTLYAAMLADPNLP-AEDQVRLRLCTSAGEALPAEVGQRWQARFGVDIVDGIGSTEMLHIFLS  321 (508)
T ss_pred             HHHHHHHHHCCcEEecchHHHHHHhcCcccc-ccccccceeEEEcCCCCCHHHHHHHHHHhCCchhhCccccccCceeec
Confidence            9999999999999999999998887654322 223578999999999999999999999999999999999999976554


Q ss_pred             CCCCCCCCCCCCCccccc-cceEEEECCCCCcCCCCceeeEEEeCCccccccccCcchhhhcccCCceecCceEEEcCCC
Q 014065          323 NPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDG  401 (431)
Q Consensus       323 ~~~~~~~~~~~~~~G~~~-~~~~~i~d~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g  401 (431)
                      +..   .....+++|+|+ +..++++|+++.+++.|+.|||+++|+.++.||+++++.++..|.++||+|||+++++++|
T Consensus       322 ~~~---~~~~~~~~G~~~~g~~v~i~d~~~~~~~~g~~Gel~i~~~~~~~gY~~~~~~~~~~~~~~~~~TGD~~~~~~~g  398 (508)
T TIGR02262       322 NLP---GDVRYGTSGKPVPGYRLRLVGDGGQDVAAGEPGELLISGPSSATMYWNNRAKTRDTFQGEWTRSGDKYVRNDDG  398 (508)
T ss_pred             CCc---cCCCCCCcCCCCCCcEEEEECCCCCCCCCCCeeEEEEecCccccccCCCHHHhHhhhhcCceeccceEEEcCCc
Confidence            432   223457899998 8999999999999999999999999999999999999999888889999999999999999


Q ss_pred             eEEEecccccceecCCeeccccceecc
Q 014065          402 YLHLVGRIKELINRGGNLHESISLFLA  428 (431)
Q Consensus       402 ~l~~~gR~~d~i~~~G~~i~~~~iE~a  428 (431)
                      .+++.||.+|+|+.+|.+++|.+||.+
T Consensus       399 ~~~~~gR~~d~i~~~G~~v~~~~ie~~  425 (508)
T TIGR02262       399 SYTYAGRTDDMLKVSGIYVSPFEIESA  425 (508)
T ss_pred             cEEEeccccceeeeCCEEECHHHHHHH
Confidence            999999999999999999999999986

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.

>PRK13383 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.7e-58  Score=448.67  Aligned_cols=400  Identities=25%  Similarity=0.344  Sum_probs=331.8

Q ss_pred             cccHHHHHHHHHHhcCCcceEEecCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcEE
Q 014065            3 GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATA   82 (431)
Q Consensus         3 ~~tl~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~   82 (431)
                      ..++.+.|.+.++.+|+++|+++.+ +++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|+++
T Consensus        34 ~~~~~~~~~~~a~~~p~~~a~~~~~-~~lTy~el~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~v~  112 (516)
T PRK13383         34 GTNPYTLLAVTAARWPGRTAIIDDD-GALSYRELQRATESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVFAVGLLGADV  112 (516)
T ss_pred             CCcHHHHHHHHHHHCCCCcEEEeCC-CcEeHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHhCeEE
Confidence            4688999999999999999998754 699999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCcccccccccccchhhhhhhccccccccccccCCCCCCC
Q 014065           83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSD  162 (431)
Q Consensus        83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (431)
                      +|+++.++.+++.++++.++++.++++++..+.......      ....+... .   ....   . .   ...+...++
T Consensus       113 vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~------~~~~~~~~-~---~~~~---~-~---~~~p~~~~~  175 (516)
T PRK13383        113 VPISTEFRSDALAAALRAHHISTVVADNEFAERIAGADD------AVAVIDPA-T---AGAE---E-S---GGRPAVAAP  175 (516)
T ss_pred             EEcCccCCHHHHHHHHhcCCCCEEEEchhHHHHHHhhhc------ceEEeccc-h---hhhh---c-C---CCCCCCCCC
Confidence            999999999999999999999999998875544332211      11111100 0   0000   0 0   001122355


Q ss_pred             eEEEEeccCCCCCCCeeeechHHHH--HHHHHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCCCCCCC
Q 014065          163 VALFLHTSGTTSRPKGVPLTQNNLA--ASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFS  240 (431)
Q Consensus       163 ~~~i~~TSGtTG~pK~v~~s~~~l~--~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~  240 (431)
                      .++++|||||||.||+|.++|....  ..........++.++++++..+|++|.+++.. ++.++..|+++++..  .++
T Consensus       176 ~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~-~~~~l~~G~~~~~~~--~~~  252 (516)
T PRK13383        176 GRIVLLTSGTTGKPKGVPRAPQLRSAVGVWVTILDRTRLRTGSRISVAMPMFHGLGLGM-LMLTIALGGTVLTHR--HFD  252 (516)
T ss_pred             CcEEEECCCCCCCCCeeeecchhhhhhhhHHhHHhhhccCCCCeEEEecCCcchhhHHH-HHHHHhcCCEEEECC--CCC
Confidence            6789999999999999999997432  11222344567888999999999999999876 778899999998876  689


Q ss_pred             hhhHHHHHHHhcceeeecchHHHHHHHhcccCC-CCCCCCCccEEEeccCCCcHHHHHHHHHHhCCceecccCcccccCc
Q 014065          241 ASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAK-PEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHL  319 (431)
Q Consensus       241 ~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~-~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~i~~~yg~tE~~~~  319 (431)
                      +..+++.+++++++.+.++|+++..+.+..... ....++++|.+++||+++++++.+++.+.++..+++.||+||++..
T Consensus       253 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~  332 (516)
T PRK13383        253 AEAALAQASLHRADAFTAVPVVLARILELPPRVRARNPLPQLRVVMSSGDRLDPTLGQRFMDTYGDILYNGYGSTEVGIG  332 (516)
T ss_pred             HHHHHHHHHHhCCcEEEecHHHHHHHHhccccccccCCCCceEEEEECCCCCCHHHHHHHHHHcCchhhhcccccccccc
Confidence            999999999999999999999999998764321 1234689999999999999999999999999999999999999866


Q ss_pred             ccCCCCCCCCCCCCCCccccc-cceEEEECCCCCcCCCCceeeEEEeCCccccccccCcchhhhcccCCceecCceEEEc
Q 014065          320 MSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFD  398 (431)
Q Consensus       320 ~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~  398 (431)
                      ......  ......+++|+|+ +++++|+|++|++++.|+.|||+++|+.++.||++.+.   ..+.+|||+|||+|++|
T Consensus       333 ~~~~~~--~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~~Gel~v~g~~~~~~Y~~~~~---~~~~~g~~~TGDl~~~d  407 (516)
T PRK13383        333 ALATPA--DLRDAPETVGKPVAGCPVRILDRNNRPVGPRVTGRIFVGGELAGTRYTDGGG---KAVVDGMTSTGDMGYLD  407 (516)
T ss_pred             eecccc--ccccCCCcccCCCCCcEEEEECCCCCCCCCCCceEEEEecCcccccccCCch---hheecCceecceeEEEc
Confidence            554331  2234567899999 89999999999999999999999999999999997653   34568999999999999


Q ss_pred             CCCeEEEecccccceecCCeeccccceecc
Q 014065          399 SDGYLHLVGRIKELINRGGNLHESISLFLA  428 (431)
Q Consensus       399 ~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a  428 (431)
                      ++|++++.||.+|+||++|++|+|.+||.+
T Consensus       408 ~~G~l~i~GR~~~~i~~~G~~v~~~eiE~~  437 (516)
T PRK13383        408 NAGRLFIVGREDDMIISGGENVYPRAVENA  437 (516)
T ss_pred             CCccEEEeccccceEEECCEEECHHHHHHH
Confidence            999999999999999999999999999975

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=6e-59  Score=453.43  Aligned_cols=401  Identities=23%  Similarity=0.279  Sum_probs=314.4

Q ss_pred             HHHHHHHHHHhcCCcceEEecCC---CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcEE
Q 014065            6 LIGLLNQVIDQFSSKRALSVSGK---FDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATA   82 (431)
Q Consensus         6 l~~~l~~~a~~~p~~~a~~~~~~---~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~   82 (431)
                      +.+.|++.++++|+++|+++.++   +++||+||.++++++|++|.++  ++||+|+++++|++++++++|||+++|+++
T Consensus         4 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~~ty~el~~~~~~lA~~L~~~--~~g~~V~l~~~~~~e~~~~~la~~~~G~~~   81 (525)
T PRK05851          4 LAAALSDAMTASGRDLVVLDRESGLWRRHPWPEVHGRAENVAARLLDR--DRPGAVGLVGEPTVELVAAIQGAWLAGAAV   81 (525)
T ss_pred             HHHHHHHHhcCCCCceEEeCCCCCcceeecHHHHHHHHHHHHHHHHhc--CCCCeEEEEcCCCHHHHHHHHHHHHcCCCC
Confidence            88999999999999999987652   6899999999999999999988  799999999999999999999999999986


Q ss_pred             EecCCC-------CCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCcccccccccccchhhhhhhcccccccccccc
Q 014065           83 APLNAA-------YTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISK  155 (431)
Q Consensus        83 v~l~~~-------~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (431)
                      ++++..       ...+++.++++.++++++|++.............       +...+...   .  ... ...  ...
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~-------~~~~~~~~---~--~~~-~~~--~~~  146 (525)
T PRK05851         82 SILPGPVRGADDGRWADATLTRFAGIGVRTVLSHGSHLERLRAVDSS-------VTVHDLAT---A--AHT-NRS--ASL  146 (525)
T ss_pred             cCCCCCCCccchhhHHHHHHHHHHhcCCCEEEeCHHHHHHHHHhhcc-------cccccccc---c--ccc-ccc--ccC
Confidence            543211       1234566778999999999987654333222110       00000000   0  000 000  001


Q ss_pred             CCCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCC-CCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeC
Q 014065          156 LTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLT-ESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLP  234 (431)
Q Consensus       156 ~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~  234 (431)
                      ....++++++++|||||||.||+|.++|.++...+......+++. ++|+++..+|++|.+++.. ++.++..|+++++.
T Consensus       147 ~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~  225 (525)
T PRK05851        147 TPPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARVGLDAATDVGCSWLPLYHDMGLAF-LLTAALAGAPLWLA  225 (525)
T ss_pred             CCCCCCCeEEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCCCCeEEEcCCCccCccHHH-HHHHHHcCCeEEEc
Confidence            124578999999999999999999999999999988888888888 8999999999999999976 78899999999987


Q ss_pred             CCCCC--ChhhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHH---hCC---c
Q 014065          235 AAGRF--SASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEA---FGA---P  306 (431)
Q Consensus       235 ~~~~~--~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~---~~~---~  306 (431)
                      +...+  ++..+++.+.++++|.+...|..+..+.+........+++++|.+++||+++++++.+++.+.   +|.   .
T Consensus       226 ~~~~~~~~~~~~~~~i~~~~~t~~~~p~~~~~~l~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~  305 (525)
T PRK05851        226 PTTAFSASPFRWLSWLSDSRATLTAAPNFAYNLIGKYARRVSDVDLGALRVALNGGEPVDCDGFERFATAMAPFGFDAGA  305 (525)
T ss_pred             CHHHHHHCHHHHHHHHHHhCCeEEeCCcHHHHHHHHhhccccCCCHHHhheeEeccccCCHHHHHHHHHHHhhcCCChhh
Confidence            63223  577899999999999886555555554433322223447899999999999999999998875   354   4


Q ss_pred             eecccCcccccCcccCCCCCC----------C--CCCCCCCccccc-cceEEEECCCC-CcCCCCceeeEEEeCCccccc
Q 014065          307 VLEAYAMTEATHLMSSNPLPE----------D--GPHKPGSVGRPV-GQEIAILDEIG-VPQEGGAKGEVCIRGPNVTKG  372 (431)
Q Consensus       307 i~~~yg~tE~~~~~~~~~~~~----------~--~~~~~~~~G~~~-~~~~~i~d~~~-~~~~~~~~Gel~v~~~~~~~g  372 (431)
                      +++.||+||++..+.......          +  .....+++|+|+ |++++|+|+++ .+++.|+.|||+++|++++.|
T Consensus       306 ~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~~g~~GEl~v~g~~~~~G  385 (525)
T PRK05851        306 AAPSYGLAESTCAVTVPVPGIGLRVDEVTTDDGSGARRHAVLGNPIPGMEVRISPGDGAAGVAGREIGEIEIRGASMMSG  385 (525)
T ss_pred             cccccchhhhceEEEecCCCCCceeeeeccccCcccceeeeecCCCCCcEEEEECCCCCccCCCCCeEEEEEecCchhhc
Confidence            999999999986655432110          0  112346899999 89999999775 468999999999999999999


Q ss_pred             cccCcchhhhcccCCceecCceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          373 YKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       373 y~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      |+++++.+    .+|||+|||+|+++ +|+++++||+||+||++|++|+|.|||.+.
T Consensus       386 Y~~~~~~~----~~~~~~TGDl~~~~-~G~l~~~GR~dd~i~~~G~~v~p~eIE~~l  437 (525)
T PRK05851        386 YLGQAPID----PDDWFPTGDLGYLV-DGGLVVCGRAKELITVAGRNIFPTEIERVA  437 (525)
T ss_pred             cccCCccC----CCCceeccceEEEE-CCEEEEEeecCCEEEECCEEeCHHHHHHHH
Confidence            99987643    36899999999996 799999999999999999999999999864

>PRK10946 entE enterobactin synthase subunit E; Provisional

Probab=100.00  E-value=4.8e-58  Score=448.48  Aligned_cols=418  Identities=24%  Similarity=0.360  Sum_probs=340.2

Q ss_pred             cccHHHHHHHHHHhcCCcceEEecCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcEE
Q 014065            3 GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATA   82 (431)
Q Consensus         3 ~~tl~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~   82 (431)
                      +.++.++|+++++  |+++|+++.+ +++||+||.++++++|+.|.+.|+++|++|+++++|+++++++++||+++|+++
T Consensus        24 ~~~~~~~~~~~a~--p~~~a~~~~~-~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~v~~~n~~~~~~~~la~~~~G~v~  100 (536)
T PRK10946         24 DLPLTDILTRHAA--SDAIAVICGE-RQFSYRELNQASDNLACSLRRQGIKPGDTALVQLGNVAEFYITFFALLKLGVAP  100 (536)
T ss_pred             CccHHHHHHHhhC--CCCeEEEeCC-CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCChHHHHHHHHHHHHcCeEE
Confidence            4688999988887  9999999754 799999999999999999999999999999999999999999999999999988


Q ss_pred             EecCCCCCHHHHHHHHhcCCceEEEecCCch-----hHHHHHHHhcCcccccccccccchhhhhhhccccccccccccCC
Q 014065           83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGN-----AAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLT  157 (431)
Q Consensus        83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (431)
                      +++.+.....++..+++.++++.++++....     .....+........... .........+....... ........
T Consensus       101 v~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~  178 (536)
T PRK10946        101 VNALFSHQRSELNAYASQIEPALLIADRQHALFSDDDFLNTLVAEHSSLRVVL-LLNDDGEHSLDDAINHP-AEDFTATP  178 (536)
T ss_pred             ecCCccccHHHHHHHHhhcCCCEEEEeccccccchHHHHHHHHhhCCCceEEE-EecCCCCccHHHHhhCc-ccccccCC
Confidence            8777777788899999999999999986531     11222222111111111 11110000011000000 01111233


Q ss_pred             CCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHHHHHH-HHHHHHhcCCEEEeCCC
Q 014065          158 NDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLA-GLLSSFAAGAAVTLPAA  236 (431)
Q Consensus       158 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~l~~G~~~~~~~~  236 (431)
                      ..++++++++|||||||.||+|.++|.++...+......+++.+++++++.+|++|.+++.. .++.++..|+++++.+ 
T Consensus       179 ~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~~~~~~~~~l~~g~~~~~~~-  257 (536)
T PRK10946        179 SPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICGFTPQTRYLCALPAAHNYPMSSPGALGVFLAGGTVVLAP-  257 (536)
T ss_pred             CCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCceEEEecCccccccchhhhHHHHhhcCcEEEECC-
Confidence            45789999999999999999999999999999888888889999999999999999888764 4788899999999876 


Q ss_pred             CCCChhhHHHHHHHhcceeeecchHHHHHHHhcccCC-CCCCCCCccEEEeccCCCcHHHHHHHHHHhCCceecccCccc
Q 014065          237 GRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAK-PEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTE  315 (431)
Q Consensus       237 ~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~-~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~i~~~yg~tE  315 (431)
                       .+++..+++.+++++++++.++|..+..+++..... ....++++|.+++||+++++++.+.+.+.+++++++.||+||
T Consensus       258 -~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~v~~gg~~l~~~~~~~~~~~~g~~~~~~YG~tE  336 (536)
T PRK10946        258 -DPSATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEGGSRAQLASLKLLQVGGARLSETLARRIPAELGCQLQQVFGMAE  336 (536)
T ss_pred             -CCCHHHHHHHHHHhCCcEEEeChHHHHHHHhhhcccCccccccceeEEEECCCCCCHHHHHHHHHhcCCeEEEeecccc
Confidence             678999999999999999999999999998763221 223468999999999999999999999999999999999999


Q ss_pred             ccCcccCCCCCCCCCCCCCCccccc--cceEEEECCCCCcCCCCceeeEEEeCCccccccccCcchhhhcc-cCCceecC
Q 014065          316 ATHLMSSNPLPEDGPHKPGSVGRPV--GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAF-LFGWFHTG  392 (431)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~G~~~--~~~~~i~d~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TG  392 (431)
                      ++......  .........++|+|+  +..++++|++|++++.|+.|||+++|+.++.||+++++.+...| .++||+||
T Consensus       337 ~~~~~~~~--~~~~~~~~~~~G~p~~~~~~v~i~d~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~d~~~~TG  414 (536)
T PRK10946        337 GLVNYTRL--DDSDERIFTTQGRPMSPDDEVWVADADGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSG  414 (536)
T ss_pred             cceeeecC--CCccccccccCCcccCCCceEEEECCCCCCCCCCCccEEEEecCccchhhcCCcccchhhcccCCceecC
Confidence            65433221  112234567899997  48999999999999999999999999999999999999988888 47999999


Q ss_pred             ceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          393 DIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       393 D~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      |+|++|++|++++.||.+|+||++|++++|.|||.+.
T Consensus       415 Dl~~~d~~G~l~~~gR~~d~i~~~G~~v~~~eiE~~l  451 (536)
T PRK10946        415 DLVSIDPDGYITVVGREKDQINRGGEKIAAEEIENLL  451 (536)
T ss_pred             ceEEECCCCcEEEeccccceeecCCEEEcHHHHHHHH
Confidence            9999999999999999999999999999999999863

>PRK13388 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=6.5e-58  Score=447.41  Aligned_cols=406  Identities=25%  Similarity=0.347  Sum_probs=329.4

Q ss_pred             cccHHHHHHHHHHhcCCcceEEecCCCcccHHHHHHHHHHHHHHHHHcCC-CCCCEEEEECCCcHHHHHHHHHHHHhCcE
Q 014065            3 GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGI-NAGDVVALTFPNTVEFVIMFLAVIRARAT   81 (431)
Q Consensus         3 ~~tl~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~~gl-~~gd~V~i~~~n~~~~~~~~lA~~~~G~~   81 (431)
                      ..|+.++|.+++  .|+++|+++.+ .++||.||.++++++|.+|.+.|+ .+||+|+++++|+++++++++||+++|++
T Consensus         2 ~~~~~~~l~~~~--~p~~~Al~~~~-~~lTy~el~~~~~~la~~L~~~g~~~~~~~V~i~~~n~~~~v~~~lA~~~~Ga~   78 (540)
T PRK13388          2 RDTIAQLLRDRA--GDDTIAVRYGD-RTWTWREVLAEAAARAAALIALADPDRPLHVGVLLGNTPEMLFWLAAAALGGYV   78 (540)
T ss_pred             chhHHHHHHhhc--cCCceEEEECC-ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCcHHHHHHHHHHhCCCE
Confidence            467889998765  69999998755 699999999999999999999999 89999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCcccccccccccchhhhhhhccccccccccccCCCCCC
Q 014065           82 AAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPS  161 (431)
Q Consensus        82 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (431)
                      ++|++|.++.+++.++++.++++++|++++....+.... ....  ..+.+....    +..... ......+.....++
T Consensus        79 ~v~l~p~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~-~~~~--~~i~~~~~~----~~~~~~-~~~~~~~~~~~~~~  150 (540)
T PRK13388         79 LVGLNTTRRGAALAADIRRADCQLLVTDAEHRPLLDGLD-LPGV--RVLDVDTPA----YAELVA-AAGALTPHREVDAM  150 (540)
T ss_pred             EEEecccCChHHHHHHHHhcCCCEEEEChhhhHHHHhhc-ccCc--eEEEccchh----hhhhhc-cccCcCCCCCCCCC
Confidence            999999999999999999999999999877654433321 0011  111111100    000000 00011111235679


Q ss_pred             CeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCCCCCCCh
Q 014065          162 DVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSA  241 (431)
Q Consensus       162 ~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~  241 (431)
                      ++++++|||||||.||+|.++|.++..........+++..+|+++..+|++|.+++...++.++..|+++++.+  .+++
T Consensus       151 ~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~v~~~--~~~~  228 (540)
T PRK13388        151 DPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERFGLTRDDVCYVSMPLFHSNAVMAGWAPAVASGAAVALPA--KFSA  228 (540)
T ss_pred             CeEEEEECCCCCCCCCEEEecHHHHHHHHHHHHHHhCCCCCCEEEEeeCchhhcchHHHHHHHHHcCcEEEECC--CCCH
Confidence            99999999999999999999999999888888888899999999999999999998876777899999999876  6789


Q ss_pred             hhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHhCCceecccCcccccCccc
Q 014065          242 STFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMS  321 (431)
Q Consensus       242 ~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~  321 (431)
                      ..+++.+++++++++..+|+.+..++...... .....+++.  ..|++++++....+.+.+++++++.||+||++.++.
T Consensus       229 ~~~~~~i~~~~vt~~~~~p~~l~~l~~~~~~~-~~~~~~l~~--~~G~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~  305 (540)
T PRK13388        229 SGFLDDVRRYGATYFNYVGKPLAYILATPERP-DDADNPLRV--AFGNEASPRDIAEFSRRFGCQVEDGYGSSEGAVIVV  305 (540)
T ss_pred             HHHHHHHHHhCCeEEEehHHHHHHHHhCCCCc-cccccceEE--EECCCCCHHHHHHHHHHhCCceecccccccccceee
Confidence            99999999999999999999999988664322 122345553  336677888899999889999999999999987665


Q ss_pred             CCCCCCCCCCCCCCccccc-cceE-----------EEECCCCCcC-CCCceeeEEEe-CCccccccccCcchhhhcccCC
Q 014065          322 SNPLPEDGPHKPGSVGRPV-GQEI-----------AILDEIGVPQ-EGGAKGEVCIR-GPNVTKGYKNNPEANKSAFLFG  387 (431)
Q Consensus       322 ~~~~~~~~~~~~~~~G~~~-~~~~-----------~i~d~~~~~~-~~~~~Gel~v~-~~~~~~gy~~~~~~~~~~~~~g  387 (431)
                      ...     ....+++|+|+ ++++           .++|++|+.+ +.++.|||+++ |++++.||+++++.+.+.|.+|
T Consensus       306 ~~~-----~~~~~~vG~p~~g~~i~~~~~~~~~~~~~~d~~g~~~~~~~~~GEl~v~~g~~~~~gY~~~~~~t~~~~~~g  380 (540)
T PRK13388        306 REP-----GTPPGSIGRGAPGVAIYNPETLTECAVARFDAHGALLNADEAIGELVNTAGAGFFEGYYNNPEATAERMRHG  380 (540)
T ss_pred             cCC-----CCCCCCCCCCCCCcEEEcCCCCccccceeccCccccccCCCcceEEEEecCCcccccccCChHHHHHHhhcC
Confidence            432     23457899998 6554           2455556655 34678999998 9999999999999998888899


Q ss_pred             ceecCceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          388 WFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       388 ~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      ||+|||+|++|+||++++.||.+|+||++|++|+|.|||.+.
T Consensus       381 ~~~TGD~~~~~~dg~l~i~GR~~d~i~~~G~~v~p~eIE~~l  422 (540)
T PRK13388        381 MYWSGDLAYRDADGWIYFAGRTADWMRVDGENLSAAPIERIL  422 (540)
T ss_pred             ceeccceEEEcCCCcEEEeccCCceEEECCEEeCHHHHHHHH
Confidence            999999999999999999999999999999999999999863

>PRK06178 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.5e-57  Score=448.48  Aligned_cols=422  Identities=28%  Similarity=0.393  Sum_probs=343.0

Q ss_pred             cccHHHHHHHHHHhcCCcceEEecCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcEE
Q 014065            3 GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATA   82 (431)
Q Consensus         3 ~~tl~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~   82 (431)
                      ..++.++|+++++.+|+++|+.+.+ +.+||.||.++++++|++|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus        32 ~~~l~~~l~~~a~~~p~~~al~~~~-~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~  110 (567)
T PRK06178         32 ERPLTEYLRAWARERPQRPAIIFYG-HVITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAVH  110 (567)
T ss_pred             cccHHHHHHHHHHHCCCceEEEECC-ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCcHHHHHHHHHHHhCeEE
Confidence            4689999999999999999998755 699999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCcccccccc-cc---cchhhhh---------------hh
Q 014065           83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATL-LD---ADSELTL---------------SL  143 (431)
Q Consensus        83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~---------------~~  143 (431)
                      +|++|..+.+++.++++.++++++++++...+.+................ .+   .......               ..
T Consensus       111 v~l~p~~~~~~~~~~l~~~~~~~ii~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (567)
T PRK06178        111 VPVSPLFREHELSYELNDAGAEVLLALDQLAPVVEQVRAETSLRHVIVTSLADVLPAEPTLPLPDSLRAPRLAAAGAIDL  190 (567)
T ss_pred             eecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHhhccCCcceEEEeccccccccccccccccccccccccccccccH
Confidence            99999999999999999999999999988766655443322211111000 00   0000000               00


Q ss_pred             c-cccccccccccCCCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHH-HhcCCCCCeEEEecChhhHHHHHHHH
Q 014065          144 A-HSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKS-VYKLTESDSTVIVLPLFHVHGMLAGL  221 (431)
Q Consensus       144 ~-~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~  221 (431)
                      . ................+++++++|||||||.||+|.++|.++......... .....++++++..+|++|.+|+...+
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~  270 (567)
T PRK06178        191 LPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVAVVGGEDSVFLSFLPEFWIAGENFGL  270 (567)
T ss_pred             HHHhhccccccccCCCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHHhccCCCCcEEEEecchHHHHHHHHHH
Confidence            0 000000111123355789999999999999999999999998876554433 35678899999999999999988778


Q ss_pred             HHHHhcCCEEEeCCCCCCChhhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEec--cCCCcHHHHHHH
Q 014065          222 LSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSC--SASLAPVILSRL  299 (431)
Q Consensus       222 ~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~--g~~~~~~~~~~~  299 (431)
                      +.++..|+++++.+  .+++..+++.+++++++.+..+|..+..+...... ...++++++.+..+  ++.++++..+.+
T Consensus       271 ~~~l~~G~~~~l~~--~~~~~~~~~~i~~~~~t~~~~~~~~~~~l~~~~~~-~~~~l~~l~~~~~~~~~~~~~~~~~~~~  347 (567)
T PRK06178        271 LFPLFSGATLVLLA--RWDAVAFMAAVERYRVTRTVMLVDNAVELMDHPRF-AEYDLSSLRQVRVVSFVKKLNPDYRQRW  347 (567)
T ss_pred             HHHHHcCceEEEeC--CCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCC-CCCCcchheeeeeccccccCCHHHHHHH
Confidence            99999999999987  67999999999999999999999999988765432 23346778876543  589999999999


Q ss_pred             HHHhCCcee-cccCcccccCcccCCCCCC----CCCCCCCCccccc-cceEEEEC-CCCCcCCCCceeeEEEeCCccccc
Q 014065          300 EEAFGAPVL-EAYAMTEATHLMSSNPLPE----DGPHKPGSVGRPV-GQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKG  372 (431)
Q Consensus       300 ~~~~~~~i~-~~yg~tE~~~~~~~~~~~~----~~~~~~~~~G~~~-~~~~~i~d-~~~~~~~~~~~Gel~v~~~~~~~g  372 (431)
                      ++.++..++ +.||+||++..+.......    +....++++|+|+ |++++++| +++++++.|+.|||+++|++++.|
T Consensus       348 ~~~~g~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~v~d~~~~~~~~~g~~Gel~v~g~~v~~g  427 (567)
T PRK06178        348 RALTGSVLAEAAWGMTETHTCDTFTAGFQDDDFDLLSQPVFVGLPVPGTEFKICDFETGELLPLGAEGEIVVRTPSLLKG  427 (567)
T ss_pred             HHHhCCcccccccccccccccceeccccccCccccccCCcccccccCCcEEEEEcCCCCCcCCCCCceEEEEECCccccc
Confidence            998887766 4799999886654432111    1123457799999 89999999 669999999999999999999999


Q ss_pred             cccCcchhhhcccCCceecCceEEEcCCCeEEEecccccceecCCeeccccceecc
Q 014065          373 YKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLA  428 (431)
Q Consensus       373 y~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a  428 (431)
                      |+++++.+...+.+|||+|||+++++++|++++.||.+|+|+.+|++|+|.|||.+
T Consensus       428 Y~~~~~~~~~~~~dg~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~eiE~~  483 (567)
T PRK06178        428 YWNKPEATAEALRDGWLHTGDIGKIDEQGFLHYLGRRKEMLKVNGMSVFPSEVEAL  483 (567)
T ss_pred             ccCChhhhhhcccCCceeecceEEEecCCeEEEEecccccEEECCEEECHHHHHHH
Confidence            99999999888889999999999999999999999999999999999999999986

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional

Probab=100.00  E-value=1.8e-57  Score=447.39  Aligned_cols=420  Identities=27%  Similarity=0.418  Sum_probs=340.1

Q ss_pred             ccHHHHHHHHHHhcCCcceEEecCCCcccHHHHHHHHHHHHHHHH-HcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcEE
Q 014065            4 VTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLV-AAGINAGDVVALTFPNTVEFVIMFLAVIRARATA   82 (431)
Q Consensus         4 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~-~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~   82 (431)
                      .++.++|...++.+|+++|++..+ +++||+||.++++++|+.|+ +.|+++||+|+++++|+++++++++||+++|+++
T Consensus        25 ~~~~~~l~~~~~~~~~~~a~~~~~-~~~Ty~el~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~  103 (560)
T PRK08751         25 RTVAEVFATSVAKFADRPAYHSFG-KTITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATFGVLRAGLTV  103 (560)
T ss_pred             CcHHHHHHHHHHhCCCCceEEECC-ceeeHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHhCeEE
Confidence            578999999999999999998754 79999999999999999997 5899999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCccccccc-cccc-------------------------c
Q 014065           83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATAT-LLDA-------------------------D  136 (431)
Q Consensus        83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------------------------~  136 (431)
                      +|++|..+.+++.++++.++++++++++.....+............... ..+.                         .
T Consensus       104 v~l~p~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (560)
T PRK08751        104 VNVNPLYTPRELKHQLIDSGASVLVVIDNFGTTVQQVIADTPVKQVITTGLGDMLGFPKAALVNFVVKYVKKLVPEYRIN  183 (560)
T ss_pred             eccCccCCHHHHHHHHHhcCCeEEEEcchhHHHHHHHhhCCCccEEEEechhhhcccccchhhhhhhhhhhccccccCCC
Confidence            9999999999999999999999999988765554443332221111000 0000                         0


Q ss_pred             hhhhhhhccccccccccccCCCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhc----CCC-CCeEEEecCh
Q 014065          137 SELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYK----LTE-SDSTVIVLPL  211 (431)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~----~~~-~~~~~~~~p~  211 (431)
                      ....+..................++++++++|||||||.||+|.++|.++...+......++    +.+ +++++..+|+
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (560)
T PRK08751        184 GAIRFREALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKLEEGCEVVITALPL  263 (560)
T ss_pred             ccccHHHHHhccCCCCCCCCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHHHHHHhhccccccCCCCceEEEecCh
Confidence            00000000000000011123346789999999999999999999999999877766555443    333 3567788999


Q ss_pred             hhHHHHHHHHHHHHhcCCEEEeCCCCCCChhhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCC
Q 014065          212 FHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASL  291 (431)
Q Consensus       212 ~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~  291 (431)
                      +|.+++....+.++..|++.++... .+++..+++.++++++|++..+|.++..+.+.... ...+++++|.+++||+++
T Consensus       264 ~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~-~~~~l~~lr~v~~gG~~~  341 (560)
T PRK08751        264 YHIFALTANGLVFMKIGGCNHLISN-PRDMPGFVKELKKTRFTAFTGVNTLFNGLLNTPGF-DQIDFSSLKMTLGGGMAV  341 (560)
T ss_pred             HHHHHHHHhhhhHhhccceEEEecC-cCCHHHHHHHHHhcceeEecChHHHHHHHHcCcCc-CCcchhhheeeeeCCCCC
Confidence            9999987766777777877766543 56899999999999999999999999999876533 234578999999999999


Q ss_pred             cHHHHHHHHHHhCCceecccCcccccCcccCCCCCCCCCCCCCCccccc-cceEEEECCCCCcCCCCceeeEEEeCCccc
Q 014065          292 APVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVT  370 (431)
Q Consensus       292 ~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d~~~~~~~~~~~Gel~v~~~~~~  370 (431)
                      ++.+.+.+++.+++.+++.||+||++..++.++.  .....++++|.|+ ++.++++|++|++++.|+.|||+++|+.++
T Consensus       342 ~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~--~~~~~~~~vG~~~~~~~v~i~d~~~~~~~~g~~Gel~v~~~~~~  419 (560)
T PRK08751        342 QRSVAERWKQVTGLTLVEAYGLTETSPAACINPL--TLKEYNGSIGLPIPSTDACIKDDAGTVLAIGEIGELCIKGPQVM  419 (560)
T ss_pred             CHHHHHHHHHHhCCeEEEeeccccCCCceecccc--cccccCCCcCccCCCceEEEECCCCCCCCCCCceEEEEecCccc
Confidence            9999999999889999999999999877665432  2234567899999 899999999999999999999999999999


Q ss_pred             cccccCcchhhhcc-cCCceecCceEEEcCCCeEEEecccccceecCCeeccccceecc
Q 014065          371 KGYKNNPEANKSAF-LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLA  428 (431)
Q Consensus       371 ~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a  428 (431)
                      .||+++++.+.+.+ .+|||+|||+|++|++|++++.||.+|+|+++|++|+|.|||.+
T Consensus       420 ~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~i~GR~~d~i~~~G~~v~p~eiE~~  478 (560)
T PRK08751        420 KGYWKRPEETAKVMDADGWLHTGDIARMDEQGFVYIVDRKKDMILVSGFNVYPNEIEDV  478 (560)
T ss_pred             hhhcCChhhhhhccccCCCccccceEEEcCCceEEEEeechhheeECCEEEcHHHHHHH
Confidence            99999998887777 46999999999999999999999999999999999999999976

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.4e-57  Score=445.49  Aligned_cols=419  Identities=22%  Similarity=0.319  Sum_probs=335.5

Q ss_pred             ccHHHHHHHHHHhcCCcceEEec--C-CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCc
Q 014065            4 VTLIGLLNQVIDQFSSKRALSVS--G-KFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARA   80 (431)
Q Consensus         4 ~tl~~~l~~~a~~~p~~~a~~~~--~-~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~   80 (431)
                      .++.++|++.++.+|++.++.+.  + .+.+||.||.++++++|++|.+.|+++||+|+++++|+++++++++||+++|+
T Consensus        10 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~~d~v~i~~~~~~~~~~~~la~~~~G~   89 (539)
T PRK07008         10 LLISSLIAHAARHAGDTEIVSRRVEGDIHRYTYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGVSGSGA   89 (539)
T ss_pred             CCHHHHHHHHHhhCCCceEEEeeccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCc
Confidence            45789999999999998888753  2 26899999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCcccccccccccc-------hhhhhhhcccccccccc
Q 014065           81 TAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDAD-------SELTLSLAHSESDTNAI  153 (431)
Q Consensus        81 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~  153 (431)
                      +++|++|..+.+++..+++.+++++++++.+..+...+...........+...+..       ....+....... ....
T Consensus        90 ~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~  168 (539)
T PRK07008         90 VCHTINPRLFPEQIAYIVNHAEDRYVLFDLTFLPLVDALAPQCPNVKGWVAMTDAAHLPAGSTPLLCYETLVGAQ-DGDY  168 (539)
T ss_pred             EEeecccccCHHHHHHHHhccCCcEEEEcchhHHHHHHHHhhCCCceEEEEEccCCccccCCcccccHHHHhccc-CCCc
Confidence            99999999999999999999999999999877665554433322111111111000       000000000000 0111


Q ss_pred             ccCCCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHH--HHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEE
Q 014065          154 SKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVS--NIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAV  231 (431)
Q Consensus       154 ~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~--~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~  231 (431)
                      ......++++++++|||||||.||+|.++|.+++.+..  .....+++.++++++..+|++|..++.. .+.++..|+++
T Consensus       169 ~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~-~~~~l~~G~~~  247 (539)
T PRK07008        169 DWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAMGLSARDAVLPVVPMFHVNAWGL-PYSAPLTGAKL  247 (539)
T ss_pred             CcccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhhcccccCCCCCceEEecCchHHhhhHHH-HHHHHhcCceE
Confidence            12234567899999999999999999999999864432  2334667888999999999999877655 67788999999


Q ss_pred             EeCCCCCCChhhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHhCCceeccc
Q 014065          232 TLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAY  311 (431)
Q Consensus       232 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~i~~~y  311 (431)
                      ++++. .+++..+++.++++++|++..+|+.+..+++..... ..+++++|.++++|+++++++.+.+.+.+++++++.|
T Consensus       248 ~~~~~-~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~-~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~l~~~Y  325 (539)
T PRK07008        248 VLPGP-DLDGKSLYELIEAERVTFSAGVPTVWLGLLNHMREA-GLRFSTLRRTVIGGSACPPAMIRTFEDEYGVEVIHAW  325 (539)
T ss_pred             EEecC-CcCHHHHHHHHHHcCCEEEEechHHHHHHHhccccc-CCCcccceEEEEcCCCCCHHHHHHHHHHhCCceeccc
Confidence            98754 578999999999999999999999999998876543 3457899999999999999999999999999999999


Q ss_pred             CcccccCcccCCCCCCC--------CCCCCCCccccc-cceEEEECCCCCcCCCC--ceeeEEEeCCccccccccCcchh
Q 014065          312 AMTEATHLMSSNPLPED--------GPHKPGSVGRPV-GQEIAILDEIGVPQEGG--AKGEVCIRGPNVTKGYKNNPEAN  380 (431)
Q Consensus       312 g~tE~~~~~~~~~~~~~--------~~~~~~~~G~~~-~~~~~i~d~~~~~~~~~--~~Gel~v~~~~~~~gy~~~~~~~  380 (431)
                      |+||++..+..+.....        ......++|+|+ +++++|+|+++++++.+  +.|||+++|+.++.||++++.  
T Consensus       326 G~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~pg~~~~i~d~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~--  403 (539)
T PRK07008        326 GMTEMSPLGTLCKLKWKHSQLPLDEQRKLLEKQGRVIYGVDMKIVGDDGRELPWDGKAFGDLQVRGPWVIDRYFRGDA--  403 (539)
T ss_pred             ccccccccceecccccccccCCchhhhhhcccCCccccceEEEEECCCCCccCCCCCcceEEEEeCCccchhhcCChh--
Confidence            99999876544321110        012246789999 89999999988888754  579999999999999999873  


Q ss_pred             hhcccCCceecCceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          381 KSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       381 ~~~~~~g~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                       ..+.+|||+|||++++|+||++++.||.+|+||.+|++|+|.|||.+.
T Consensus       404 -~~~~~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~v~p~eIE~~l  451 (539)
T PRK07008        404 -SPLVDGWFPTGDVATIDADGFMQITDRSKDVIKSGGEWISSIDIENVA  451 (539)
T ss_pred             -hhhcCCCcccCceEEEcCCCcEEEeecccCEEEeCCeEEcHHHHHHHH
Confidence             345689999999999999999999999999999999999999999863

>PRK07867 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.8e-57  Score=441.54  Aligned_cols=404  Identities=23%  Similarity=0.319  Sum_probs=332.3

Q ss_pred             ccHHHHHHHHHHhcCCcceEEecCCCcccHHHHHHHHHHHHHHHHHc-CCCCCCEEEEECCCcHHHHHHHHHHHHhCcEE
Q 014065            4 VTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAA-GINAGDVVALTFPNTVEFVIMFLAVIRARATA   82 (431)
Q Consensus         4 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~~-gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~   82 (431)
                      .++.++|++.|.  ++++++++.+ +++||+||.++++++|++|+++ |++++++|+++++|+++++++++||+++|+++
T Consensus         5 ~~~~~~l~~~a~--~~~~a~~~~~-~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~   81 (529)
T PRK07867          5 PTVAELLLPLAE--DDDRGLYFED-SFTSWREHIRGSAARAAALRARLDPTRPPHVGVLLDNTPEFSLLLGAAALSGIVP   81 (529)
T ss_pred             ccHHHHHHHhcc--cCCceEEECC-cEEeHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHHHHHhcCCEE
Confidence            488999988775  7899998755 7999999999999999999997 89999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCcccccccccccchhhhhhhccccccccccccCCCCCCC
Q 014065           83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSD  162 (431)
Q Consensus        83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (431)
                      +|+++..+.+++.++++.++++++|++++.........    .....+......    +..................+++
T Consensus        82 v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~----~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~  153 (529)
T PRK07867         82 VGLNPTRRGAALARDIAHADCQLVLTESAHAELLDGLD----PGVRVINVDSPA----WADELAAHRDAEPPFRVADPDD  153 (529)
T ss_pred             EEecCCCChHHHHHHHHhCCCeEEEECHhHHHHHHhhc----cCceEEEecccc----HHHHhcccCCCCCCcccCCccc
Confidence            99999999999999999999999999987655443321    011111111100    1100000011111223356789


Q ss_pred             eEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCCCCCCChh
Q 014065          163 VALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSAS  242 (431)
Q Consensus       163 ~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~  242 (431)
                      +++++|||||||.||+|.++|.++..+.......+++..+|+++..+|++|.+++...++.++..|+++++.+  .+++.
T Consensus       154 ~~~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~--~~~~~  231 (529)
T PRK07867        154 LFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRFGLGPDDVCYVSMPLFHSNAVMAGWAVALAAGASIALRR--KFSAS  231 (529)
T ss_pred             eEEEEECCCCCCCCcEEEecHHHHHHHHHHHHHhhCCCcccEEEEecchhHHHHHHHHHHHHHhcCceEEecC--CCCHH
Confidence            9999999999999999999999999888888888889999999999999999999887888999999999987  67899


Q ss_pred             hHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHhCCceecccCcccccCcccC
Q 014065          243 TFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSS  322 (431)
Q Consensus       243 ~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~  322 (431)
                      .+++.++++++|++..+|+.+..++....... ...+++|. ++||+.+++. ..++.+.+++++++.||+||++.....
T Consensus       232 ~~~~~i~~~~vt~~~~~p~~~~~ll~~~~~~~-~~~~~lr~-~~gg~~~~~~-~~~~~~~~g~~l~~~YG~TE~~~~~~~  308 (529)
T PRK07867        232 GFLPDVRRYGATYANYVGKPLSYVLATPERPD-DADNPLRI-VYGNEGAPGD-IARFARRFGCVVVDGFGSTEGGVAITR  308 (529)
T ss_pred             HHHHHHHHhCCeEEeccHHHHHHHHhCCCccc-ccccceEE-EecCCCChHH-HHHHHHHhCCcEEEeeccccccccccc
Confidence            99999999999999999999999877654221 22356774 5688887766 467777889999999999999866543


Q ss_pred             CCCCCCCCCCCCCccccccceEEEEC-CCCCcCCCCc------------eeeEEE-eCCccccccccCcchhhhcccCCc
Q 014065          323 NPLPEDGPHKPGSVGRPVGQEIAILD-EIGVPQEGGA------------KGEVCI-RGPNVTKGYKNNPEANKSAFLFGW  388 (431)
Q Consensus       323 ~~~~~~~~~~~~~~G~~~~~~~~i~d-~~~~~~~~~~------------~Gel~v-~~~~~~~gy~~~~~~~~~~~~~g~  388 (431)
                      .+     ....+++|.|++. ++++| +++.+++.|+            .|||++ +|++++.||+++++.+...|.+||
T Consensus       309 ~~-----~~~~~~~g~~~~~-~~i~~~~~~~~~~~g~~~~~~~~~~~~~~Gel~i~~g~~~~~gy~~~~~~~~~~~~~g~  382 (529)
T PRK07867        309 TP-----DTPPGALGPLPPG-VAIVDPDTGTECPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERMRGGV  382 (529)
T ss_pred             CC-----CCCCCCcCCCCCC-EEEEECCCCCCCCCCccccccccccCCcceEEEEecCCcccccccCChHhhhhhhcCCe
Confidence            22     1345678999843 77888 5688888888            899999 999999999999999988899999


Q ss_pred             eecCceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          389 FHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       389 ~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      |+|||+++++++|++++.||.+|+|+++|++|+|.|||.+.
T Consensus       383 ~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~p~eIE~~l  423 (529)
T PRK07867        383 YWSGDLAYRDADGYAYFAGRLGDWMRVDGENLGTAPIERIL  423 (529)
T ss_pred             EeeccEEEEeCCCcEEEeccccCeEEECCEEeCHHHHHHHH
Confidence            99999999999999999999999999999999999999864

>TIGR03205 pimA dicarboxylate--CoA ligase PimA

Probab=100.00  E-value=6.9e-57  Score=441.27  Aligned_cols=417  Identities=31%  Similarity=0.429  Sum_probs=335.3

Q ss_pred             cccHHHHHHHHHHhcCCcceEEecCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcEE
Q 014065            3 GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATA   82 (431)
Q Consensus         3 ~~tl~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~   82 (431)
                      ..|+.++|++.++.+|+++|+.+.+ +++||.||.++++++|++|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus        20 ~~~~~~~~~~~~~~~p~~~a~~~~~-~~~ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~~~   98 (541)
T TIGR03205        20 RGTLPDLLSKAAADYGPRPALEFRD-RPITYTELEAMAETAAAALLRAGYGKDASVALYLGNTPDHPINFFGALKAGARV   98 (541)
T ss_pred             CCCHHHHHHHHHHHcCCCceEEECC-cEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHhcCeEE
Confidence            3489999999999999999998755 699999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHhcCCceEEEecCCch--hHHHHHHHhcCcccccccccccc---------------hhhhhhhcc
Q 014065           83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGN--AAAQAAASKLNISHATATLLDAD---------------SELTLSLAH  145 (431)
Q Consensus        83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~  145 (431)
                      +|++|..+.+++.++++.++++++++++...  ....+........ ..+......               ....+....
T Consensus        99 v~l~~~~~~~~l~~~i~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (541)
T TIGR03205        99 VHLSPLDGERALSHKLSDSGARLLITSDLAALLPMALKFLEKGLLD-RLIVCEDDNWGKVGTPQAPIPADPRIVTYADFV  177 (541)
T ss_pred             EecCCCCCHHHHHHHHhhcCceEEEEeCchhhhHHHHHhhhcccce-EEEEecccccccccccccccCCCcccccHHHHH
Confidence            9999999999999999999999999986421  1111111100000 010000000               000000000


Q ss_pred             ccccccccccCCCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHh------cCCCCCeEEEecChhhHHHHHH
Q 014065          146 SESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVY------KLTESDSTVIVLPLFHVHGMLA  219 (431)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~------~~~~~~~~~~~~p~~~~~~~~~  219 (431)
                      . ............++++++++|||||||.||+|.++|.++....... ..+      .....+++++.+|++|.+++..
T Consensus       178 ~-~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~-~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~  255 (541)
T TIGR03205       178 K-GAAAPAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIY-DVWGKPSRATRGDVERVICVLPLFHIYALTV  255 (541)
T ss_pred             h-cCCCCCCCCCCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHH-HhhcccccccCCCCceEEEeccHHHHHHHHH
Confidence            0 0000111223456899999999999999999999999987654322 111      2234578999999999999888


Q ss_pred             HHHHHHhcCCEEEeCCCCCCChhhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHH
Q 014065          220 GLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRL  299 (431)
Q Consensus       220 ~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~  299 (431)
                      .++.++..|+++++..  .+++..+++.|+++++|++.++|+++..+++.... ....++++|.+++||+++++++.+++
T Consensus       256 ~~~~~l~~g~~~~~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-~~~~~~~l~~i~~gg~~~~~~~~~~~  332 (541)
T TIGR03205       256 ILLRSLRRGDLISLHQ--RFDVAAVFRDIEEKRATVFPGVPTMWIALANDPSL-EKRDLSSLATIGSGGAPLPVEVANFF  332 (541)
T ss_pred             HHHHHHhcCCEEEecC--CCCHHHHHHHHHHcCCeEeechHHHHHHHHhCccc-cccCccccceEEEccccCCHHHHHHH
Confidence            7888999999998876  67999999999999999999999999998765332 23346799999999999999999999


Q ss_pred             HHHhCCceecccCcccccCcccCCCCCCCCCCCCCCccccc-cceEEEE--CCCCCcCCCCceeeEEEeCCccccccccC
Q 014065          300 EEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAIL--DEIGVPQEGGAKGEVCIRGPNVTKGYKNN  376 (431)
Q Consensus       300 ~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~--d~~~~~~~~~~~Gel~v~~~~~~~gy~~~  376 (431)
                      .+.++.++++.||+||++.....+..  .....++++|+|+ +..++++  |+++++++.|+.|||+++|++++.||+++
T Consensus       333 ~~~~~~~~~~~YG~TE~~~~~~~~~~--~~~~~~~~~G~~~~~~~~~v~~~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~  410 (541)
T TIGR03205       333 ERKTGLKLKSGWGMTETCSPGTGHPP--EGPDKPGSIGLMLPGIELDVVSLDDPTKVLPPGEVGELRIRGPNVTRGYWNR  410 (541)
T ss_pred             HHHhCCCeecccccccCCcccccCCC--CCCCCCCCcceeccCceeEEEecCCCCccCCCCCeeEEEEecCCccccccCC
Confidence            98889999999999999977665532  1234567899998 7777765  56788999999999999999999999999


Q ss_pred             cchhhhcccCCceecCceEEEcCCCeEEEecccccceecCCeeccccceecc
Q 014065          377 PEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLA  428 (431)
Q Consensus       377 ~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a  428 (431)
                      ++.+.+.|.++||+|||+++++++|++++.||.+|+||.+|++|+|.|||.+
T Consensus       411 ~~~~~~~~~~~~~~TGD~~~~~~~g~l~i~GR~~~~i~~~G~~i~~~eIE~~  462 (541)
T TIGR03205       411 PEESAEAFVGDRFLTGDIGYMDTDGYFFLVDRKKDMIISGGFNVYPQMIEQA  462 (541)
T ss_pred             hhhhHhhhccCCcccCceEEEcCCceEEEEccccCeEEECCEEECHHHHHHH
Confidence            9999888989999999999999999999999999999999999999999985

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3.1e-57  Score=445.86  Aligned_cols=419  Identities=30%  Similarity=0.433  Sum_probs=337.4

Q ss_pred             ccHHHHHHHHHHhcCCcceEEecCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcEEE
Q 014065            4 VTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAA   83 (431)
Q Consensus         4 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v   83 (431)
                      .++.+++...++.+|+++|+++.+ +++||+||.+++.++|+.|.+.|+++||+|+++++|+++++++++||+++|++++
T Consensus        24 ~~~~~~~~~~a~~~p~~~a~~~~~-~~~ty~eL~~~~~~la~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v  102 (563)
T PRK06710         24 QPLHKYVEQMASRYPEKKALHFLG-KDITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVV  102 (563)
T ss_pred             ccHHHHHHHHHHHCCCceEEEecC-eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHcCeEEe
Confidence            478999999999999999998755 6999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCccccccccc-c-------------------------cch
Q 014065           84 PLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLL-D-------------------------ADS  137 (431)
Q Consensus        84 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------------------------~~~  137 (431)
                      |++|..+.+++.++++.++++.+++++....................... .                         ...
T Consensus       103 pi~p~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (563)
T PRK06710        103 QTNPLYTERELEYQLHDSGAKVILCLDLVFPRVTNVQSATKIEHVIVTRIADFLPFPKNLLYPFVQKKQSNLVVKVSESE  182 (563)
T ss_pred             ccCcccCHHHHHHHHhccCCeEEEEeccchhhhhccchhhccceeEEeccccccccccccccchhhcccccccccccccc
Confidence            99999999999999999999999998865443322211111100000000 0                         000


Q ss_pred             h-hhhhhccccccccccccCCCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHH-HhcCC-CCCeEEEecChhhH
Q 014065          138 E-LTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKS-VYKLT-ESDSTVIVLPLFHV  214 (431)
Q Consensus       138 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~-~~~~~-~~~~~~~~~p~~~~  214 (431)
                      . ..+..... .............+++++++|||||||.||+|.++|.++..+...... .++.. .++++++.+|++|.
T Consensus       183 ~~~~~~~~~~-~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~  261 (563)
T PRK06710        183 TIHLWNSVEK-EVNTGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWLYNCKEGEEVVLGVLPFFHV  261 (563)
T ss_pred             hhhhhhhhhh-ccccccccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhhccCCCCCCceEEEeCchHHH
Confidence            0 00000000 000000011123578999999999999999999999998765433222 23333 35688899999999


Q ss_pred             HHHHHHHHHHHhcCCEEEeCCCCCCChhhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHH
Q 014065          215 HGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPV  294 (431)
Q Consensus       215 ~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~  294 (431)
                      +++...++.++..|+++++.+  .+++..+++.++++++|++.++|+.+..+++..... ...++++|.+++||++++++
T Consensus       262 ~g~~~~~~~~l~~G~~~~~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-~~~~~~lr~v~~gg~~~~~~  338 (563)
T PRK06710        262 YGMTAVMNLSIMQGYKMVLIP--KFDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPLLK-EYDISSIRACISGSAPLPVE  338 (563)
T ss_pred             HHHHHHHHHHHHcCCeEEEcC--CCCHHHHHHHHHHcCCeEEeccHHHHHHHHcCCccc-cCChhhhhheeeCCCcCCHH
Confidence            998776778899999999976  678999999999999999999999999988754332 23468999999999999999


Q ss_pred             HHHHHHHHhCCceecccCcccccCcccCCCCCCCCCCCCCCccccc-cceEEEEC-CCCCcCCCCceeeEEEeCCccccc
Q 014065          295 ILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKG  372 (431)
Q Consensus       295 ~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d-~~~~~~~~~~~Gel~v~~~~~~~g  372 (431)
                      +.+++.+.+++++++.||+||++........  .....++++|+|. +..++++| +++.+++.|+.|||+++|+.++.|
T Consensus       339 ~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~--~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~g~~Gel~v~g~~~~~g  416 (563)
T PRK06710        339 VQEKFETVTGGKLVEGYGLTESSPVTHSNFL--WEKRVPGSIGVPWPDTEAMIMSLETGEALPPGEIGEIVVKGPQIMKG  416 (563)
T ss_pred             HHHHHHHhhCCCEecccccccCccccccCcc--cccccCCccCCCCCCCeEEEEECCCCccCCCCCceEEEEecCccchh
Confidence            9999999889999999999999876544322  1233457899999 78999998 668999999999999999999999


Q ss_pred             cccCcchhhhcccCCceecCceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          373 YKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       373 y~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      |+++++.+...+.+|||+|||+++++++|.+++.||.+|+|+.+|.+|+|.+||.+.
T Consensus       417 Y~~~~~~~~~~~~~g~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~p~eiE~~l  473 (563)
T PRK06710        417 YWNKPEETAAVLQDGWLHTGDVGYMDEDGFFYVKDRKKDMIVASGFNVYPREVEEVL  473 (563)
T ss_pred             hhCChHHHhhhcccCcccccceEEEcCCCcEEEeeccccEEEECCEEECHHHHHHHH
Confidence            999999998888899999999999999999999999999999999999999999863

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=3.8e-58  Score=531.96  Aligned_cols=409  Identities=20%  Similarity=0.257  Sum_probs=346.6

Q ss_pred             ccHHHHHHHHHHhcCCcceEEecCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcEEE
Q 014065            4 VTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAA   83 (431)
Q Consensus         4 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v   83 (431)
                      .++.++|.++|+++|+++|+++.+ +++||+||+++++++|+.|.+.|+++|++|+++++|+++++++++||+++|++++
T Consensus      2003 ~~~~~~~~~~a~~~p~~~A~~~~~-~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~~~~~lAil~aGa~~v 2081 (5163)
T PRK12316       2003 PGVHQRIAEQAARAPEAIAVVFGD-QHLSYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVALLAVLKAGGAYV 2081 (5163)
T ss_pred             CCHHHHHHHHHHhCCCCeEEEcCC-CeEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHhhceEEe
Confidence            479999999999999999999755 6999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCcccccccccccchhhhhhhccccccccccccCCCCCCCe
Q 014065           84 PLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDV  163 (431)
Q Consensus        84 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (431)
                      |++|.++.+++.++++.+++++++++..........   ..  ...+.+...   ..+.     ......+.....++++
T Consensus      2082 pld~~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~---~~--~~~~~~~~~---~~~~-----~~~~~~~~~~~~~~~~ 2148 (5163)
T PRK12316       2082 PLDPNYPAERLAYMLEDSGAALLLTQRHLLERLPLP---AG--VARLPLDRD---AEWA-----DYPDTAPAVQLAGENL 2148 (5163)
T ss_pred             ecCCCCCHHHHHHHHHhcCCCEEEeChhhhhhcccc---cc--cceEeccch---hhhh-----ccCccCCCCCCCCCCe
Confidence            999999999999999999999999987643322100   00  000001000   0000     0011112234568999


Q ss_pred             EEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCCCCCCChhh
Q 014065          164 ALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSAST  243 (431)
Q Consensus       164 ~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~  243 (431)
                      ++++|||||||.||||.++|.++.+.+......+++.++++++.+.|++|..++.. ++.+|..|+++++++...+++..
T Consensus      2149 a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~-~~~~L~~G~~~~~~~~~~~~~~~ 2227 (5163)
T PRK12316       2149 AYVIYTSGSTGLPKGVAVSHGALVAHCQAAGERYELSPADCELQFMSFSFDGAHEQ-WFHPLLNGARVLIRDDELWDPEQ 2227 (5163)
T ss_pred             EEEEeCccCCCCCCEeEEccHHHHHHHHHHHHhcCCCCcceEEEecCchHHHHHHH-HHHHHhCCCEEEeCCcccCCHHH
Confidence            99999999999999999999999999999889999999999999999999988765 99999999999887755678999


Q ss_pred             HHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHh-CCceecccCcccccCcccC
Q 014065          244 FWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVLEAYAMTEATHLMSS  322 (431)
Q Consensus       244 ~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~-~~~i~~~yg~tE~~~~~~~  322 (431)
                      +++.++++++|++.++|++++.+.+......  ..+++|.+++|||+++++.++.|.+.+ +..++|.||+||++..++.
T Consensus      2228 ~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~--~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~ 2305 (5163)
T PRK12316       2228 LYDEMERHGVTILDFPPVYLQQLAEHAERDG--RPPAVRVYCFGGEAVPAASLRLAWEALRPVYLFNGYGPTEAVVTPLL 2305 (5163)
T ss_pred             HHHHHHHcCCeEEEcChHHHHHHHhhhhccc--CCcceeEEEEecccCCHHHHHHHHHhCCCcEEEECccchhheeeeee
Confidence            9999999999999999999999987653321  235899999999999999999999877 6789999999999877655


Q ss_pred             CCCCCCC--CCCCCCccccc-cceEEEECCCCCcCCCCceeeEEEeCCccccccccCcchhhhccc--------CCceec
Q 014065          323 NPLPEDG--PHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFL--------FGWFHT  391 (431)
Q Consensus       323 ~~~~~~~--~~~~~~~G~~~-~~~~~i~d~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~--------~g~~~T  391 (431)
                      .......  .....++|+|+ |++++|+|+++++++.|++|||+|+|+++++||+++++.+++.|.        ++||+|
T Consensus      2306 ~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~vp~g~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~~~~~~~~~~yrT 2385 (5163)
T PRK12316       2306 WKCRPQDPCGAAYVPIGRALGNRRAYILDADLNLLAPGMAGELYLGGEGLARGYLNRPGLTAERFVPDPFSASGERLYRT 2385 (5163)
T ss_pred             eecccccccCCCcCCcccccCCCEEEEECCCCCCCCCCCeeEEEecchhhcccccCChhhhhhhccCCCCCCCCCeeEec
Confidence            4322111  11235799999 899999999999999999999999999999999999999998883        249999


Q ss_pred             CceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          392 GDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       392 GD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      ||+|++++||.++++||+||+||++|++|+|.|||.+.
T Consensus      2386 GDl~~~~~dG~l~~~GR~d~~iki~G~rie~~eIE~~l 2423 (5163)
T PRK12316       2386 GDLARYRADGVVEYLGRIDHQVKIRGFRIELGEIEARL 2423 (5163)
T ss_pred             ccEEEEcCCCcEEEecCCCCeEEEcCccCChHHHHHHH
Confidence            99999999999999999999999999999999999863

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=9.7e-57  Score=442.06  Aligned_cols=420  Identities=27%  Similarity=0.411  Sum_probs=341.9

Q ss_pred             ccHHHHHHHHHHhcCCcceEEecCCCcccHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCcHHHHHHHHHHHHhCcEE
Q 014065            4 VTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVA-AGINAGDVVALTFPNTVEFVIMFLAVIRARATA   82 (431)
Q Consensus         4 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~-~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~   82 (431)
                      .++.++|+.+++.+|+++|+.+.+ +++||.||.++++++|.+|.+ .|+++||+|+++++|+++++++++||+++|+++
T Consensus        23 ~~l~~~l~~~a~~~p~~~a~~~~~-~~lTy~~l~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~  101 (560)
T PRK08974         23 QSLVDMFEQAVARYADQPAFINMG-EVMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALFGILRAGMIV  101 (560)
T ss_pred             ccHHHHHHHHHHhCCCCceEEECC-ccccHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEE
Confidence            579999999999999999998755 699999999999999999985 899999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCccccccc-cccc-c--hh--------------------
Q 014065           83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATAT-LLDA-D--SE--------------------  138 (431)
Q Consensus        83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~--~~--------------------  138 (431)
                      +|++|..+.+++.++++.++++.++++++..+...++............ ..+. .  ..                    
T Consensus       102 v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (560)
T PRK08974        102 VNVNPLYTPRELEHQLNDSGAKAIVIVSNFAHTLEKVVFKTPVKHVILTRMGDQLSTAKGTLVNFVVKYIKRLVPKYHLP  181 (560)
T ss_pred             eccCccCCHHHHHHHHHhcCceEEEEeccccHHHHHHhhhcCcceEEEecccccccccccccccchhhhcccccccccCC
Confidence            9999999999999999999999999988765555444322211110000 0000 0  00                    


Q ss_pred             --hhhhhccccccccccccCCCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhc---CCCCCeEEEecChhh
Q 014065          139 --LTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYK---LTESDSTVIVLPLFH  213 (431)
Q Consensus       139 --~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~---~~~~~~~~~~~p~~~  213 (431)
                        ..+...................+++++++|||||||.||+|.++|.++..++......+.   ...++.++..+|++|
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  261 (560)
T PRK08974        182 DAISFRSALHKGRRMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLLHPGKELVVTALPLYH  261 (560)
T ss_pred             CcccHHHHhhccCCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhhccccCCCccEEEEeCcHHH
Confidence              000000000000001112245789999999999999999999999999876654433332   344667888999999


Q ss_pred             HHHHHHHHHHHHhcCCEEEeCCCCCCChhhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcH
Q 014065          214 VHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAP  293 (431)
Q Consensus       214 ~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~  293 (431)
                      .+++....+..+..|+++++... ..++..+++.++++++|++..+|++++.+.+..... ...++++|.+++||+++++
T Consensus       262 ~~~~~~~~~~~l~~g~~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~-~~~~~~lr~~~~gg~~~~~  339 (560)
T PRK08974        262 IFALTVNCLLFIELGGQNLLITN-PRDIPGFVKELKKYPFTAITGVNTLFNALLNNEEFQ-ELDFSSLKLSVGGGMAVQQ  339 (560)
T ss_pred             HHHHHHHHHHHhhcCCeEEEecC-ccCHHHHHHHHHhcCcceEcCcHHHHHHHHhCcCcc-cCCccceeEEEecCccCCH
Confidence            99987777888889998777543 457889999999999999999999999998765432 3447899999999999999


Q ss_pred             HHHHHHHHHhCCceecccCcccccCcccCCCCCCCCCCCCCCccccc-cceEEEECCCCCcCCCCceeeEEEeCCccccc
Q 014065          294 VILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKG  372 (431)
Q Consensus       294 ~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d~~~~~~~~~~~Gel~v~~~~~~~g  372 (431)
                      .+.+.+++.+|+++++.||+||++..+..+..  +....++++|+|+ ++.++++|+++++++.|+.|||+++|+.++.|
T Consensus       340 ~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~--~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~g~~Gel~v~g~~~~~g  417 (560)
T PRK08974        340 AVAERWVKLTGQYLLEGYGLTECSPLVSVNPY--DLDYYSGSIGLPVPSTEIKLVDDDGNEVPPGEPGELWVKGPQVMLG  417 (560)
T ss_pred             HHHHHHHHHhCCcEEeeecccccCceeeccCC--CCcccCCccccCcCCCEEEEECCCCCCCCCCCceEEEEecCCcchh
Confidence            99999999889999999999999977666543  2234567899999 79999999999999999999999999999999


Q ss_pred             cccCcchhhhcccCCceecCceEEEcCCCeEEEecccccceecCCeeccccceecc
Q 014065          373 YKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLA  428 (431)
Q Consensus       373 y~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a  428 (431)
                      |+++++.+...|.+|||+|||+++++++|.+++.||.+|+|+++|.+|+|.+||.+
T Consensus       418 y~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~~IE~~  473 (560)
T PRK08974        418 YWQRPEATDEVIKDGWLATGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDV  473 (560)
T ss_pred             hcCChhhhhhhhhcCCcccCCEEEEcCCceEEEEecccceEEeCCEEECHHHHHHH
Confidence            99999888888888999999999999999999999999999999999999999986

>PRK08279 long-chain-acyl-CoA synthetase; Validated

Probab=100.00  E-value=6.8e-57  Score=446.28  Aligned_cols=415  Identities=25%  Similarity=0.339  Sum_probs=330.3

Q ss_pred             CcccHHHHHHHHHHhcCCcceEEecCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcE
Q 014065            2 EGVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARAT   81 (431)
Q Consensus         2 ~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~   81 (431)
                      ...|+.++|.+.++++|+++|+++.+ +++||+||.++++++|++|.+.|+++||+|+++++|+++++++++||+++|++
T Consensus        35 ~~~tl~~~l~~~a~~~p~~~Ai~~~~-~~~Ty~eL~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~v~~~lA~~~~G~~  113 (600)
T PRK08279         35 SKRSLGDVFEEAAARHPDRPALLFED-QSISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLAAWLGLAKLGAV  113 (600)
T ss_pred             CcccHHHHHHHHHHhCCCCcEEEeCC-CcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcE
Confidence            35689999999999999999999755 79999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCccccccccccc-----chhhhhhhccccccc-ccccc
Q 014065           82 AAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDA-----DSELTLSLAHSESDT-NAISK  155 (431)
Q Consensus        82 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~  155 (431)
                      ++++++..+.+++.++++.++++++|++.+..+...................+.     .....+......... .....
T Consensus       114 ~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (600)
T PRK08279        114 VALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEEARADLARPPRLWVAGGDTLDDPEGYEDLAAAAAGAPTTNPASR  193 (600)
T ss_pred             EeecCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHhhhhcccceEEEecCccccccccHHHHhhhcccCCccCCCcc
Confidence            999999999999999999999999999988766655544332221111111110     000011100000000 01122


Q ss_pred             CCCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCC
Q 014065          156 LTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPA  235 (431)
Q Consensus       156 ~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~  235 (431)
                      .....+++++++|||||||.||+|.++|.++..++..+...+++.++++++..+|++|.+++...++.++..|+++++.+
T Consensus       194 ~~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~l~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~  273 (600)
T PRK08279        194 SGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLLRLTPDDVLYCCLPLYHNTGGTVAWSSVLAAGATLALRR  273 (600)
T ss_pred             cCCCccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHHHHHhcCCCCCcEEEEecCchhhhhHHHHHHHHHhcCcEEEEcC
Confidence            33456899999999999999999999999999999988888999999999999999999999887888899999999977


Q ss_pred             CCCCChhhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHhCC-ceecccCcc
Q 014065          236 AGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGA-PVLEAYAMT  314 (431)
Q Consensus       236 ~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~-~i~~~yg~t  314 (431)
                        .+++..+++.++++++|++.++|++++.+++...... ....++|.  ++|+.+++++++.+.+.++. .+++.||+|
T Consensus       274 --~~~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~~~~~~-~~~~~l~~--~~g~~l~~~~~~~~~~~~~~~~l~~~YG~t  348 (600)
T PRK08279        274 --KFSASRFWDDVRRYRATAFQYIGELCRYLLNQPPKPT-DRDHRLRL--MIGNGLRPDIWDEFQQRFGIPRILEFYAAS  348 (600)
T ss_pred             --CCCHHHHHHHHHHhcceEEeehHHHHHHHHhCCCCcc-ccCcceeE--EecCCCCHHHHHHHHHHhCcceeeeeeccc
Confidence              7899999999999999999999999999887644322 22455664  45788999999999999975 599999999


Q ss_pred             cccCcccCCCCCCCCCCCCCCcccccc-----ce---------EEEECCCC--CcCCCCceeeEE--EeCCccccccccC
Q 014065          315 EATHLMSSNPLPEDGPHKPGSVGRPVG-----QE---------IAILDEIG--VPQEGGAKGEVC--IRGPNVTKGYKNN  376 (431)
Q Consensus       315 E~~~~~~~~~~~~~~~~~~~~~G~~~~-----~~---------~~i~d~~~--~~~~~~~~Gel~--v~~~~~~~gy~~~  376 (431)
                      |++..+...      ...++++|++..     ..         ..+.+.++  .+++.|+.|||+  +++++++.|| ++
T Consensus       349 E~~~~~~~~------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~Gel~~~i~~~~~~~GY-~~  421 (600)
T PRK08279        349 EGNVGFINV------FNFDGTVGRVPLWLAHPYAIVKYDVDTGEPVRDADGRCIKVKPGEVGLLIGRITDRGPFDGY-TD  421 (600)
T ss_pred             ccceeeccc------CCCCcccccccccccccceeeeeccCcCceeeCCCCccccCCCCCceeEEEEecCccccccc-CC
Confidence            988543321      123456665432     11         22333333  357889999998  7799999999 77


Q ss_pred             cchhhhccc-------CCceecCceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          377 PEANKSAFL-------FGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       377 ~~~~~~~~~-------~g~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      ++.+.+.|.       ++||+|||+|++|+||++++.||.||+||++|++|+|.|||.+-
T Consensus       422 ~~~t~~~~~~~~~~~~~~~~~TGDlg~~~~dG~l~~~GR~~d~ik~~G~~i~p~eIE~~l  481 (600)
T PRK08279        422 PEASEKKILRDVFKKGDAWFNTGDLMRDDGFGHAQFVDRLGDTFRWKGENVATTEVENAL  481 (600)
T ss_pred             chhhHHHHhhcccCCCCceEeecceEEEcCCccEEEecccCCeEEECCcccCHHHHHHHH
Confidence            877766541       47999999999999999999999999999999999999999863

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=6.6e-58  Score=529.90  Aligned_cols=409  Identities=20%  Similarity=0.295  Sum_probs=347.2

Q ss_pred             cccHHHHHHHHHHhcCCcceEEecCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcEE
Q 014065            3 GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATA   82 (431)
Q Consensus         3 ~~tl~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~   82 (431)
                      ..++.++|+++++++|+++|+++.+ +++||+||.++++++|+.|.+.|+++|++|+++++|+++++++++||+++|+++
T Consensus       510 ~~~~~~~~~~~a~~~p~~~A~~~~~-~~~TY~eL~~~~~~lA~~L~~~gv~~g~~V~l~~~~s~~~i~~~la~~~aG~~~  588 (5163)
T PRK12316        510 QRGVHRLFEEQVERTPEAPALAFGE-ETLDYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLAILKAGGAY  588 (5163)
T ss_pred             CCCHHHHHHHHHHHCCCCeEEEeCC-ceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCCEE
Confidence            3579999999999999999999755 699999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCcccccccccccchhhhhhhccccccccccccCCCCCCC
Q 014065           83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSD  162 (431)
Q Consensus        83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (431)
                      +|++|.++.+++.++++.++++++|++.........    . .....+.......  ...     ............+++
T Consensus       589 vpld~~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~----~-~~~~~~~~~~~~~--~~~-----~~~~~~~~~~~~~~~  656 (5163)
T PRK12316        589 VPLDPEYPAERLAYMLEDSGVQLLLSQSHLGRKLPL----A-AGVQVLDLDRPAA--WLE-----GYSEENPGTELNPEN  656 (5163)
T ss_pred             eccCccCcHHHHHHHHHhCCCCEEEEChhhhhhCCc----c-cCceEEEecCcch--hhc-----cCCCCCCCCCCCCCC
Confidence            999999999999999999999999998764322110    0 0001111110000  000     111112223456789


Q ss_pred             eEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCCC-CCCCh
Q 014065          163 VALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAA-GRFSA  241 (431)
Q Consensus       163 ~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~-~~~~~  241 (431)
                      +++++|||||||.||||.++|.++.+.+......+++.++++++...|++|..+++. ++.+|..|+++++.+. ..+++
T Consensus       657 ~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~p~~fd~~~~~-~~~~L~~G~~l~i~~~~~~~~~  735 (5163)
T PRK12316        657 LAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQQAYGLGVGDTVLQKTPFSFDVSVWE-FFWPLMSGARLVVAAPGDHRDP  735 (5163)
T ss_pred             eEEEEECCCcCCCCCEeeEcCHHHHHHHHHHHHhcCCCCCCEEEeeCCeehHHHHHH-HHHHHhCCCEEEECCccccCCH
Confidence            999999999999999999999999999999999999999999999999999999876 8999999999999753 24689


Q ss_pred             hhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHh-CCceecccCcccccCcc
Q 014065          242 STFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVLEAYAMTEATHLM  320 (431)
Q Consensus       242 ~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~-~~~i~~~yg~tE~~~~~  320 (431)
                      ..+++.++++++|++.++|++++.+++...   ...++++|.+++||+++++++.+.+.+.+ +++++|.||+||++..+
T Consensus       736 ~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~---~~~~~~l~~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~  812 (5163)
T PRK12316        736 AKLVELINREGVDTLHFVPSMLQAFLQDED---VASCTSLRRIVCSGEALPADAQEQVFAKLPQAGLYNLYGPTEAAIDV  812 (5163)
T ss_pred             HHHHHHHHHcCCeEEEeCHHHHHHHHhccc---cccCCCccEEEEeeccCCHHHHHHHHHhCCCCeEEeCcCcChheeee
Confidence            999999999999999999999999986532   22478999999999999999999998776 68999999999998655


Q ss_pred             cCCCCCCCCCCCCCCccccc-cceEEEECCCCCcCCCCceeeEEEeCCccccccccCcchhhhccc-------CCceecC
Q 014065          321 SSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFL-------FGWFHTG  392 (431)
Q Consensus       321 ~~~~~~~~~~~~~~~~G~~~-~~~~~i~d~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-------~g~~~TG  392 (431)
                      +.... ........++|+|+ |++++|+|+++++++.|+.|||+|+|+++++||+++++.+++.|.       ++||+||
T Consensus       813 ~~~~~-~~~~~~~~~iG~p~~~~~~~i~d~~~~~~p~G~~GEl~i~G~~v~~GYl~~~~~t~~~f~~~~~~~~~~~y~TG  891 (5163)
T PRK12316        813 THWTC-VEEGGDSVPIGRPIANLACYILDANLEPVPVGVLGELYLAGRGLARGYHGRPGLTAERFVPSPFVAGERMYRTG  891 (5163)
T ss_pred             eEEec-ccccCCCCCCccccCCCEEEEECCCCCCCCCCCceEEEecccccChhhCCChhhhhhhCCCCCCCCCCeeEecC
Confidence            44332 12234456899999 899999999999999999999999999999999999999988873       2499999


Q ss_pred             ceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          393 DIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       393 D~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      |+|++++||.++++||+||+||++|++|+|.|||.+.
T Consensus       892 Dl~~~~~dG~l~~~GR~d~~ik~~G~rI~~~EIE~~l  928 (5163)
T PRK12316        892 DLARYRADGVIEYAGRIDHQVKLRGLRIELGEIEARL  928 (5163)
T ss_pred             ccEEECCCCCEEeecccCCEEEEceEEcChHHHHHHH
Confidence            9999999999999999999999999999999999874

>PLN02479 acetate-CoA ligase

Probab=100.00  E-value=8.4e-57  Score=442.42  Aligned_cols=421  Identities=23%  Similarity=0.337  Sum_probs=329.1

Q ss_pred             ccHHHHHHHHHHhcCCcceEEecCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcEEE
Q 014065            4 VTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAA   83 (431)
Q Consensus         4 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v   83 (431)
                      +|..+.++..++.+|+++|+.+.+ .++||+||.++++++|.+|.+.|+++||+|+++++|+++++++++||+++|++++
T Consensus        20 ~~~~~~~~~~~~~~p~~~a~~~~~-~~~ty~eL~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~v~v   98 (567)
T PLN02479         20 LTPLWFLERAAVVHPTRKSVVHGS-VRYTWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIPAMYEAHFGVPMAGAVVN   98 (567)
T ss_pred             cCHHHHHHHHHhhCCCceEEEECC-ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhCCcEEE
Confidence            467888999999999999998744 6999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcC------cc-cccccccccc------------hhhhhhhc
Q 014065           84 PLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLN------IS-HATATLLDAD------------SELTLSLA  144 (431)
Q Consensus        84 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~------~~-~~~~~~~~~~------------~~~~~~~~  144 (431)
                      |+++..+.+++.++++.++++.+++++...+...+......      .. ...+.+.+..            ....+...
T Consensus        99 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (567)
T PLN02479         99 CVNIRLNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKSLQYALGKGAIEYEKF  178 (567)
T ss_pred             EeccccCHHHHHHHHhhcCceEEEEchhhhhHHHHHHHHHhhcccccCCCceEEEecCCcCCccccccccccCcccHHHH
Confidence            99999999999999999999999999876555444332111      00 0011111000            00000000


Q ss_pred             cccccccccccCCCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHH
Q 014065          145 HSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSS  224 (431)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  224 (431)
                      ................++.++++|||||||.||+|.++|.++..........+++..+++++..+|++|.+++...+..+
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~~~~~~~~~  258 (567)
T PLN02479        179 LETGDPEFAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIWGMNEGAVYLWTLPMFHCNGWCFTWTLA  258 (567)
T ss_pred             HhccccccccCCCCCcccceEEEECCCCCCCCcEEEeccHHHHHHHHHHHhhcCCCCCCEEEEecchhhhhhHHHHHHHH
Confidence            00000000001122334677899999999999999999999876666555667788899999999999999987655556


Q ss_pred             HhcCCEEEeCCCCCCChhhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHhC
Q 014065          225 FAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFG  304 (431)
Q Consensus       225 l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~  304 (431)
                      +..|.++++ .  .+++..+++.++++++|++..+|+++..+.+.........+++++.++++|+++++.+.+.+.+. +
T Consensus       259 ~~~g~~~~~-~--~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~l~~~~~~G~~~~~~~~~~~~~~-~  334 (567)
T PLN02479        259 ALCGTNICL-R--QVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKSETILPLPRVVHVMTAGAAPPPSVLFAMSEK-G  334 (567)
T ss_pred             hhcCceEec-c--CCCHHHHHHHHHHcCCeEEEecHHHHHHHHhhhhhcccccccceeEEEEcCCCCCHHHHHHHHhc-C
Confidence            677776655 3  57899999999999999999999999999876543222246889999999999999999998865 8


Q ss_pred             CceecccCcccccCcccCCCCCC--------CCCCCCCCccccc-cce-EEEEC-CCCCcCCCC--ceeeEEEeCCcccc
Q 014065          305 APVLEAYAMTEATHLMSSNPLPE--------DGPHKPGSVGRPV-GQE-IAILD-EIGVPQEGG--AKGEVCIRGPNVTK  371 (431)
Q Consensus       305 ~~i~~~yg~tE~~~~~~~~~~~~--------~~~~~~~~~G~~~-~~~-~~i~d-~~~~~~~~~--~~Gel~v~~~~~~~  371 (431)
                      .++++.||+||+++.+.......        .......+.|.+. +.. ++++| +++.+++.+  +.|||+++|++++.
T Consensus       335 ~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~i~d~~~~~~~~~~g~~~GEl~v~g~~~~~  414 (567)
T PLN02479        335 FRVTHTYGLSETYGPSTVCAWKPEWDSLPPEEQARLNARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEIVMRGNMVMK  414 (567)
T ss_pred             CceecccccccccccccceeccccccccCcccccccccccCCCcCCcCceeEEcCCCCcccCCCCCCceEEEEeccchhh
Confidence            99999999999865433221100        0011123567766 554 88998 567888653  67999999999999


Q ss_pred             ccccCcchhhhcccCCceecCceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          372 GYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       372 gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      ||+++++.+.+.|.+|||+|||++++|++|++++.||.+|+||.+|++|+|.|||.+.
T Consensus       415 GY~~~~~~t~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE~~l  472 (567)
T PLN02479        415 GYLKNPKANEEAFANGWFHSGDLGVKHPDGYIEIKDRSKDIIISGGENISSLEVENVV  472 (567)
T ss_pred             hhhcCcccccchhcCCceecceeEEEcCCccEEEeccccceEEeCCEEEcHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999864

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.2e-56  Score=442.33  Aligned_cols=422  Identities=22%  Similarity=0.303  Sum_probs=337.7

Q ss_pred             cccHHHHHHHHHHhcCCcceEEecC--CCcccHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCcHHHHHHHHHHHHhC
Q 014065            3 GVTLIGLLNQVIDQFSSKRALSVSG--KFDLTYSRIHELVERAASRLVA-AGINAGDVVALTFPNTVEFVIMFLAVIRAR   79 (431)
Q Consensus         3 ~~tl~~~l~~~a~~~p~~~a~~~~~--~~~~Ty~el~~~~~~~a~~L~~-~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G   79 (431)
                      ..|+.++|++.|..+|+++|+++.+  ++++||+||.++++++|++|++ .|+++||+|+++++|+++++++++||+++|
T Consensus         9 ~~~~~~~l~~~a~~~~~~~a~~~~~~~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~~~~~n~~e~~~~~lA~~~~G   88 (576)
T PRK05620          9 PLSLTRILEYGSTVHGDTTVTTWGGAEQEQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVACMG   88 (576)
T ss_pred             CCcHHHHHHHHHHhCCCceEEEEcCCceEEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHHHhcC
Confidence            3689999999999999999998743  3799999999999999999997 799999999999999999999999999999


Q ss_pred             cEEEecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCcccccccccccch------------hhhhhhcccc
Q 014065           80 ATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADS------------ELTLSLAHSE  147 (431)
Q Consensus        80 ~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~  147 (431)
                      +++++++|..+.+++.++++.++++++|+++...+.+.............+.......            ...+..... 
T Consensus        89 ~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-  167 (576)
T PRK05620         89 AVFNPLNKQLMNDQIVHIINHAEDEVIVADPRLAEQLGEILKECPCVRAVVFIGPSDADSAAAHMPEGIKVYSYEALLD-  167 (576)
T ss_pred             CEEeecccccCHHHHHHHHhccCCcEEEEChhhHHHHHHHHhhCccccEEEEecCcccccchhccccccccccHHHHhh-
Confidence            9999999999999999999999999999998876666555443322111111111000            000111000 


Q ss_pred             ccccccccCCCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHH--HHHhcCCCCCeEEEecChhhHHHHHHHHHHHH
Q 014065          148 SDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNI--KSVYKLTESDSTVIVLPLFHVHGMLAGLLSSF  225 (431)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~--~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l  225 (431)
                      ............++++++++|||||||.||+|.++|.++.......  ...+++..++++++.+|++|.+++.. .+.++
T Consensus       168 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~-~~~~l  246 (576)
T PRK05620        168 GRSTVYDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSLAVTHGESFLCCVPIYHVLSWGV-PLAAF  246 (576)
T ss_pred             cCCCcCCCCCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhhhhcCCCCCCeEEEeCChHHhhhhHH-HHHHH
Confidence            0011111233456899999999999999999999999986554432  33567888999999999999999876 78889


Q ss_pred             hcCCEEEeCCCCCCChhhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHhCC
Q 014065          226 AAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGA  305 (431)
Q Consensus       226 ~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~  305 (431)
                      ..|+++++.+. .+++..+++.+++++++++..+|+++..++.+..... ....++|.+++||+++++++.+.+.+.+++
T Consensus       247 ~~g~~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~  324 (576)
T PRK05620        247 MSGTPLVFPGP-DLSAPTLAKIIATAMPRVAHGVPTLWIQLMVHYLKNP-PERMSLQEIYVGGSAVPPILIKAWEERYGV  324 (576)
T ss_pred             hcCceEEecCC-CCCHHHHHHHHHHhcCceeeecCHHHHHHHHHhhccC-cccCceeEEEEcCCCCCHHHHHHHHHHhCC
Confidence            99999988754 5789999999999999999999999998876543222 224589999999999999999999999999


Q ss_pred             ceecccCcccccCcccCCCCCCC-----CCCCCCCccccc-cceEEEECCCCCcCC--CCceeeEEEeCCccccccccCc
Q 014065          306 PVLEAYAMTEATHLMSSNPLPED-----GPHKPGSVGRPV-GQEIAILDEIGVPQE--GGAKGEVCIRGPNVTKGYKNNP  377 (431)
Q Consensus       306 ~i~~~yg~tE~~~~~~~~~~~~~-----~~~~~~~~G~~~-~~~~~i~d~~~~~~~--~~~~Gel~v~~~~~~~gy~~~~  377 (431)
                      ++++.||+||++..+........     ......++|++. +++++++|+ |..++  .++.|||+++|+.++.||++++
T Consensus       325 ~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~-g~~~~~~~~~~Gel~v~g~~~~~gY~~~~  403 (576)
T PRK05620        325 DVVHVWGMTETSPVGTVARPPSGVSGEARWAYRVSQGRFPASLEYRIVND-GQVMESTDRNEGEIQVRGNWVTASYYHSP  403 (576)
T ss_pred             ceeeeccccccccceeeeccCCccccccccccccccCCcCCceeEEEecC-CccccCCCCCceEEEEEcCcccccccCCc
Confidence            99999999999876554332110     011234788888 899999997 76664  4678999999999999999988


Q ss_pred             chh----------------hhcc-cCCceecCceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          378 EAN----------------KSAF-LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       378 ~~~----------------~~~~-~~g~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      +.+                ...+ .+|||+|||++++++||.+++.||.+|+||.+|++|+|.+||.+.
T Consensus       404 ~~t~~~~~~~f~~~~~~~~~~~~~~~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~i~~~eIE~~l  472 (576)
T PRK05620        404 TEEGGGAASTFRGEDVEDANDRFTADGWLRTGDVGSVTRDGFLTIHDRARDVIRSGGEWIYSAQLENYI  472 (576)
T ss_pred             cccccccccccccccchhhhcccccCCcEecCceEEEcCCceEEEEechhhhhhcCCEEEcHHHHHHHH
Confidence            766                2223 368999999999999999999999999999999999999999864

>PRK07787 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.5e-57  Score=434.47  Aligned_cols=380  Identities=31%  Similarity=0.452  Sum_probs=323.2

Q ss_pred             HHHhcCCcceEEecCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcEEEecCCCCCHH
Q 014065           13 VIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPD   92 (431)
Q Consensus        13 ~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~   92 (431)
                      .++..++++|++.. ++++||+||.++++++|..|.     ++|+|+++++|+++++++++||+++|++++|+++..+.+
T Consensus         9 ~~~~~~~~~a~~~~-~~~~Ty~el~~~~~~~a~~L~-----~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~   82 (471)
T PRK07787          9 VAAAADIADAVRIG-GRVLSRSDLAGAATAVAERVA-----GARRVAVLATPTLATVLAVVGALIAGVPVVPVPPDSGVA   82 (471)
T ss_pred             hhcccCCceEEEeC-CcEEEHHHHHHHHHHHHHHhc-----cCCEEEEECCCCHHHHHHHHHHHhcCcEEeecCCCCChH
Confidence            34566899999874 479999999999999999985     579999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCceEEEecCCchhHHHHHHHhcCcccccccccccchhhhhhhccccccccccccCCCCCCCeEEEEeccCC
Q 014065           93 EFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGT  172 (431)
Q Consensus        93 ~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGt  172 (431)
                      ++.++++.+++++++++.....        .......... ..            .  .........++++++++|||||
T Consensus        83 ~l~~~l~~~~~~~il~~~~~~~--------~~~~~~~~~~-~~------------~--~~~~~~~~~~~~~a~i~~TSGT  139 (471)
T PRK07787         83 ERRHILADSGAQAWLGPAPDDP--------AGLPHVPVRL-HA------------R--SWHRYPEPDPDAPALIVYTSGT  139 (471)
T ss_pred             HHHHHHHhcCCCEEEecCCccc--------ccccceeeec-cc------------c--ccccCCCCCCCceEEEEECCCC
Confidence            9999999999999999764110        0000000000 00            0  0001112356899999999999


Q ss_pred             CCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCCCCCCChhhHHHHHHHhc
Q 014065          173 TSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYN  252 (431)
Q Consensus       173 TG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~  252 (431)
                      ||.||+|.++|.++..++......+++.++++++..+|++|.+|++..++.++..|+++++.+  .+++..+++.++ ++
T Consensus       140 TG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~--~~~~~~~~~~i~-~~  216 (471)
T PRK07787        140 TGPPKGVVLSRRAIAADLDALAEAWQWTADDVLVHGLPLFHVHGLVLGVLGPLRIGNRFVHTG--RPTPEAYAQALS-EG  216 (471)
T ss_pred             CCCCCEEEEeHHHHHHHHHHHHHhcCCCccceeEeccCCeeechhHHHHHHHHhcCCEEEecC--CCCHHHHHHHHh-hC
Confidence            999999999999999988888888889999999999999999999988999999999999876  678999999999 99


Q ss_pred             ceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHhCCceecccCcccccCcccCCCCCCCCCCC
Q 014065          253 ATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHK  332 (431)
Q Consensus       253 ~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~  332 (431)
                      ++++.++|+++..+++....  ...++++|.+++||+++++++++++.+.++.++++.||+||++.......   +....
T Consensus       217 ~t~~~~~P~~~~~l~~~~~~--~~~l~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~---~~~~~  291 (471)
T PRK07787        217 GTLYFGVPTVWSRIAADPEA--ARALRGARLLVSGSAALPVPVFDRLAALTGHRPVERYGMTETLITLSTRA---DGERR  291 (471)
T ss_pred             ceEEEcchHHHHHHHhCccc--cccccceeEEEECCCCCCHHHHHHHHHHcCCCeecccCccccCcceecCC---CCccc
Confidence            99999999999999875432  23468999999999999999999999989999999999999986554432   23445


Q ss_pred             CCCccccc-cceEEEECCCCCcCC-CCc-eeeEEEeCCccccccccCcchhhhccc-CCceecCceEEEcCCCeEEEecc
Q 014065          333 PGSVGRPV-GQEIAILDEIGVPQE-GGA-KGEVCIRGPNVTKGYKNNPEANKSAFL-FGWFHTGDIGYFDSDGYLHLVGR  408 (431)
Q Consensus       333 ~~~~G~~~-~~~~~i~d~~~~~~~-~~~-~Gel~v~~~~~~~gy~~~~~~~~~~~~-~g~~~TGD~~~~~~~g~l~~~gR  408 (431)
                      ++++|+|+ +..++|+|+++.+++ .++ .|||+++|++++.||+++++.+++.|. +|||+|||+|++++||++++.||
T Consensus       292 ~~~vG~~~~g~~~~i~d~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~t~~~~~~~~~~~TGDlg~~~~dg~l~~~GR  371 (471)
T PRK07787        292 PGWVGLPLAGVETRLVDEDGGPVPHDGETVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVAVVDPDGMHRIVGR  371 (471)
T ss_pred             CCcccccCCCcEEEEECCCCCCCCCCCCCceEEEEECcccchhhcCChhhchhcccCCCceecCceEEEcCCCCEEEeCC
Confidence            67899999 899999998898887 343 799999999999999999999988885 79999999999999999999999


Q ss_pred             c-ccceecCCeeccccceeccc
Q 014065          409 I-KELINRGGNLHESISLFLAK  429 (431)
Q Consensus       409 ~-~d~i~~~G~~i~~~~iE~a~  429 (431)
                      . +|+++.+|++|+|.+||.+.
T Consensus       372 ~~d~~i~~~G~~v~~~eIE~~l  393 (471)
T PRK07787        372 ESTDLIKSGGYRIGAGEIETAL  393 (471)
T ss_pred             CCceeEeeCCEEECHHHHHHHH
Confidence            6 88999999999999999863

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=2.6e-57  Score=517.58  Aligned_cols=410  Identities=25%  Similarity=0.354  Sum_probs=346.8

Q ss_pred             cccHHHHHHHHHHhcCCcceEEecCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcEE
Q 014065            3 GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATA   82 (431)
Q Consensus         3 ~~tl~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~   82 (431)
                      ..++.++|+++++++|+++|+++.+ +++||+||+++++++|+.|.+.|+++|++|+++++|+++++++++||+++|+++
T Consensus       511 ~~~~~~~~~~~a~~~pd~~Al~~~~-~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~lail~aG~~~  589 (3956)
T PRK12467        511 PDCVHQLIEAQARQHPERPALVFGE-QVLSYAELNRQANRLAHVLIAAGVGPDVLVGIAVERSIEMVVGLLAVLKAGGAY  589 (3956)
T ss_pred             CCCHHHHHHHHHHHCCCCeEEEeCC-ceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCcEE
Confidence            3579999999999999999999755 799999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCcccccccccccchhhhhhhccccccccccccCCCCCCC
Q 014065           83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSD  162 (431)
Q Consensus        83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (431)
                      +|++|.++.+++.++++++++++++++.+......    ... ....+.+.....  ...     ......+.....+++
T Consensus       590 vpld~~~p~~rl~~il~~~~~~~vl~~~~~~~~~~----~~~-~~~~~~~~~~~~--~~~-----~~~~~~~~~~~~~~~  657 (3956)
T PRK12467        590 VPLDPEYPQDRLAYMLDDSGVRLLLTQSHLLAQLP----VPA-GLRSLCLDEPAD--LLC-----GYSGHNPEVALDPDN  657 (3956)
T ss_pred             eccCCCChHHHHHHHHHhcCCCEEEechhhhhhcc----ccc-CccEEEeccccc--ccc-----ccCCCCCCCCCCCCC
Confidence            99999999999999999999999999875332211    000 000110110000  000     001111223456789


Q ss_pred             eEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCCCC-CCCh
Q 014065          163 VALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAG-RFSA  241 (431)
Q Consensus       163 ~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~-~~~~  241 (431)
                      +++++|||||||.||+|.++|.++.+.+......+++.++++++...|++|..+++. ++.++..|+++++.+.. .+++
T Consensus       658 ~a~iiyTSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~-~~~~L~~G~~lv~~~~~~~~~~  736 (3956)
T PRK12467        658 LAYVIYTSGSTGQPKGVAISHGALANYVCVIAERLQLAADDSMLMVSTFAFDLGVTE-LFGALASGATLHLLPPDCARDA  736 (3956)
T ss_pred             eEEEEECCCCCCCcCEEEEecHHHHHHHHHHHHhcCCCCCCEEEEecCccHhHHHHH-HHHHHhCCCEEEEcCccccCCH
Confidence            999999999999999999999999999998888999999999999999999999877 89999999999997743 4689


Q ss_pred             hhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHh-CCceecccCcccccCcc
Q 014065          242 STFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVLEAYAMTEATHLM  320 (431)
Q Consensus       242 ~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~-~~~i~~~yg~tE~~~~~  320 (431)
                      ..+++.|+++++|++.++|++++.+++.....   ...++|.+++|||++++++.+.+.+.+ +++++|.||+||++..+
T Consensus       737 ~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~---~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~  813 (3956)
T PRK12467        737 EAFAALMADQGVTVLKIVPSHLQALLQASRVA---LPRPQRALVCGGEALQVDLLARVRALGPGARLINHYGPTETTVGV  813 (3956)
T ss_pred             HHHHHHHHHcCCeEEEcCHHHHHHHHhhhccc---cCCcccEEEEEeecCCHHHHHHHHHhCCCCEEEeCcCCChhhhhe
Confidence            99999999999999999999999998754322   246789999999999999999999876 68999999999999877


Q ss_pred             cCCCCCCCC-CCCCCCccccc-cceEEEECCCCCcCCCCceeeEEEeCCccccccccCcchhhhcccC--------Ccee
Q 014065          321 SSNPLPEDG-PHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF--------GWFH  390 (431)
Q Consensus       321 ~~~~~~~~~-~~~~~~~G~~~-~~~~~i~d~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~--------g~~~  390 (431)
                      +........ .....++|+|+ ++.++|+|+++++++.|+.|||+|+|+++++||+++++.+++.|..        +||+
T Consensus       814 ~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~vp~G~~GEL~i~G~~v~~GYl~~p~~T~~~F~~~p~~~~g~r~yr  893 (3956)
T PRK12467        814 STYELSDEERDFGNVPIGQPLANLGLYILDHYLNPVPVGVVGELYIGGAGLARGYHRRPALTAERFVPDPFGADGGRLYR  893 (3956)
T ss_pred             eeEecccccccCCCCcccCCcCCCEEEEECCCCCCCCCCCceEEEecccccchhhcCCccccHhhCcCCCCCCCCceeEe
Confidence            665432211 12236799999 8999999999999999999999999999999999999999888731        3999


Q ss_pred             cCceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          391 TGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       391 TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      |||+|++++||.++++||.||+||++|++|+|.|||.+.
T Consensus       894 TGDl~~~~~dG~l~~~GR~d~~vki~G~rI~~~eIE~~L  932 (3956)
T PRK12467        894 TGDLARYRADGVIEYLGRMDHQVKIRGFRIELGEIEARL  932 (3956)
T ss_pred             cCceeEEcCCCcEEEeccccCeEEECCEecCHHHHHHHH
Confidence            999999999999999999999999999999999999864

>PRK05850 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3e-57  Score=447.35  Aligned_cols=414  Identities=23%  Similarity=0.337  Sum_probs=320.8

Q ss_pred             ccHHHHHHHHHHhcCCcceEEecC--------CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHH
Q 014065            4 VTLIGLLNQVIDQFSSKRALSVSG--------KFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAV   75 (431)
Q Consensus         4 ~tl~~~l~~~a~~~p~~~a~~~~~--------~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~   75 (431)
                      +++.++|++++..+|+++|+++.+        .+++||+||.++++++|++|.+.| .+||+|+++++|+++++++++||
T Consensus         1 ~s~~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~lty~eL~~~v~~~A~~L~~~g-~~gd~V~l~~~n~~~~~~~~lA~   79 (578)
T PRK05850          1 SSVPSLLRERASLQPDDAAFTFIDYEQDPAGVAETLTWSQLYRRTLNVAEELRRHG-STGDRAVILAPQGLEYIVAFLGA   79 (578)
T ss_pred             CcHHHHHHHHHhcCCCceEEEEEccCCCCCCceeeecHHHHHHHHHHHHHHHHHhC-CCCCEEEEEcCCcccHHHHHHHH
Confidence            478899999999999999998632        268999999999999999999999 68999999999999999999999


Q ss_pred             HHhCcEEEecCC---CCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCc-ccccccccccchhhhhhhcccccccc
Q 014065           76 IRARATAAPLNA---AYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNI-SHATATLLDADSELTLSLAHSESDTN  151 (431)
Q Consensus        76 ~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (431)
                      +++|++++|+++   ..+.+++.++++.+++++++++++..+.+.+....... ....+...+.   .  ...   . ..
T Consensus        80 ~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~---~-~~  150 (578)
T PRK05850         80 LQAGLIAVPLSVPQGGAHDERVSAVLRDTSPSVVLTTSAVVDDVTEYVAPQPGQSAPPVIEVDL---L--DLD---S-PR  150 (578)
T ss_pred             HHcCceEEecCCCCccchHHHHHHHHHhcCCCEEEEcHHHHHHHHHHHhhcccccccceEeecc---c--ccc---c-CC
Confidence            999999999997   45788999999999999999998766554433221110 0000000000   0  000   0 00


Q ss_pred             ccccCCCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHh-c-----CCCCCeEEEecChhhHHHHHHHHHHHH
Q 014065          152 AISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVY-K-----LTESDSTVIVLPLFHVHGMLAGLLSSF  225 (431)
Q Consensus       152 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~-~-----~~~~~~~~~~~p~~~~~~~~~~~~~~l  225 (431)
                      .........+++++++|||||||.||+|.++|.+++.++....... .     ...++++++.+|++|..|++..++.++
T Consensus       151 ~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l  230 (578)
T PRK05850        151 GSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVSWLPFYHDMGLVLGVCAPI  230 (578)
T ss_pred             ccccCCCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccCCCCcceEEEECCCCCCchhHHHHHHHH
Confidence            0112234568999999999999999999999999988776554332 2     355789999999999999988899999


Q ss_pred             hcCCEEEeCCCCC--CChhhHHHHHHHhcceeeecchHHHH-HHHhcccC--CCCCCCCCccEEEeccCCCcHHHHHHHH
Q 014065          226 AAGAAVTLPAAGR--FSASTFWQDMIKYNATWYTAVPTIHQ-IVLDRHVA--KPEPVYPKLRFIRSCSASLAPVILSRLE  300 (431)
Q Consensus       226 ~~G~~~~~~~~~~--~~~~~~~~~i~~~~~t~~~~~p~~~~-~l~~~~~~--~~~~~~~~l~~i~~~g~~~~~~~~~~~~  300 (431)
                      +.|+++++.+...  .++..+++.+.+++++.. .+|..+. .+......  ....+++++|.+++||+++++++.+++.
T Consensus       231 ~~G~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~  309 (578)
T PRK05850        231 LGGCPAVLTSPVAFLQRPARWMQLLASNPHAFS-AAPNFAFELAVRKTSDDDMAGLDLGGVLGIISGSERVHPATLKRFA  309 (578)
T ss_pred             hcCCcEEEeCHHHHHHCHHHHHHHHHHcCCeEE-eCCcHHHHHHHHhcchhhhcCcchhhheeEEECcCCCCHHHHHHHH
Confidence            9999999876322  268899999999999865 5665543 33322111  1123467899999999999999999998


Q ss_pred             HHhC------CceecccCcccccCcccCCCCCCCC----------------------CCCCCCccccccceEEEECC-CC
Q 014065          301 EAFG------APVLEAYAMTEATHLMSSNPLPEDG----------------------PHKPGSVGRPVGQEIAILDE-IG  351 (431)
Q Consensus       301 ~~~~------~~i~~~yg~tE~~~~~~~~~~~~~~----------------------~~~~~~~G~~~~~~~~i~d~-~~  351 (431)
                      +.|+      ..+++.||+||++..+.........                      .....++|.|.+.+++++|+ ++
T Consensus       310 ~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~g~p~~~~~~ivd~~~~  389 (578)
T PRK05850        310 DRFAPFNLRETAIRPSYGLAEATVYVATREPGQPPESVRFDYEKLSAGHAKRCETGGGTPLVSYGSPRSPTVRIVDPDTC  389 (578)
T ss_pred             HHHHhcCcCcccccCccchhhhhhheeccCCCCCceEEEECHHHHhCCceEecCCCCCceEEeccCCCCCEEEEEcCCCC
Confidence            8873      3689999999987655433211000                      00112345565678999995 47


Q ss_pred             CcCCCCceeeEEEeCCccccccccCcchhhhccc------------CCceecCceEEEcCCCeEEEecccccceecCCee
Q 014065          352 VPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFL------------FGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNL  419 (431)
Q Consensus       352 ~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~------------~g~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~  419 (431)
                      .+++.|+.|||+++|+.++.||+++++.+++.|.            ++||+|||+|+++ +|++++.||.+|+||++|++
T Consensus       390 ~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~~~~~~w~~TGDl~~~~-~G~l~~~GR~~d~i~~~G~~  468 (578)
T PRK05850        390 IECPAGTVGEIWVHGDNVAAGYWQKPEETERTFGATLVDPSPGTPEGPWLRTGDLGFIS-EGELFIVGRIKDLLIVDGRN  468 (578)
T ss_pred             cCCCCCCEEEEEEecCcccccccCChhhhHHHhhcccccccccCCCCCeeeccceeeEE-CCEEEEEcccccEEEECCee
Confidence            8999999999999999999999999999988773            4799999999997 99999999999999999999


Q ss_pred             ccccceeccc
Q 014065          420 HESISLFLAK  429 (431)
Q Consensus       420 i~~~~iE~a~  429 (431)
                      |+|.|||.+.
T Consensus       469 i~p~eIE~~l  478 (578)
T PRK05850        469 HYPDDIEATI  478 (578)
T ss_pred             cCHHHHHHHH
Confidence            9999999863

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=2.3e-57  Score=522.20  Aligned_cols=412  Identities=20%  Similarity=0.271  Sum_probs=349.4

Q ss_pred             ccHHHHHHHHHHhcCCcceEEecCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcEEE
Q 014065            4 VTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAA   83 (431)
Q Consensus         4 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v   83 (431)
                      .++.++|.++++++|+++|+...+ .++||+||+++++++|+.|++.|+++|++|+++++++++++++++|++++|++++
T Consensus      3720 ~~~~~~~~~~~~~~p~~~Av~~~~-~~~tY~eL~~~~~~la~~L~~~gv~~~~~V~v~~~~s~~~~v~~lavlkaG~a~v 3798 (4334)
T PRK05691       3720 QSYVRLFEAQVAAHPQRIAASCLD-QQWSYAELNRAANRLGHALRAAGVGVDQPVALLAERGLDLLGMIVGSFKAGAGYL 3798 (4334)
T ss_pred             cCHHHHHHHHHHhCCCceEEEcCC-CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHhhCcEEe
Confidence            578999999999999999999766 5999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCccc-ccccccccchhhhhhhccccccccccccCCCCCCC
Q 014065           84 PLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISH-ATATLLDADSELTLSLAHSESDTNAISKLTNDPSD  162 (431)
Q Consensus        84 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (431)
                      |++|.++.+++.++++.+++++++++.................. ..+...+.        ..........+.....+++
T Consensus      3799 pld~~~p~~r~~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~ 3870 (4334)
T PRK05691       3799 PLDPGLPAQRLQRIIELSRTPVLVCSAACREQARALLDELGCANRPRLLVWEE--------VQAGEVASHNPGIYSGPDN 3870 (4334)
T ss_pred             CCCCCChHHHHHHHHHhcCCCEEEecCcccchhhhhhcccccccccceeeecc--------cccccccccCCCCCCCCCc
Confidence            99999999999999999999999999876544333332221100 00000000        0000111112223456789


Q ss_pred             eEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCCCC-CCCh
Q 014065          163 VALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAG-RFSA  241 (431)
Q Consensus       163 ~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~-~~~~  241 (431)
                      .+|++|||||||.||||+++|+++.+.+......++++++++++...++.+..+.+. ++.++..|+++++++.. ..++
T Consensus      3871 ~ayvi~TSGSTG~PKGV~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~s~~fd~s~~~-~~~~l~~G~~l~i~~~~~~~~~ 3949 (4334)
T PRK05691       3871 LAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKVPYLALSEADVIAQTASQSFDISVWQ-FLAAPLFGARVEIVPNAIAHDP 3949 (4334)
T ss_pred             eEEEEECCCCCCCCCEEEeehHHHHHHHHHHHHhcCCCccceEEEecCCchhHHHHH-HHHHHhCCCEEEEcCccccCCH
Confidence            999999999999999999999999999999889999999999999999999999877 89999999999987632 3578


Q ss_pred             hhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHh-CCceecccCcccccCcc
Q 014065          242 STFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVLEAYAMTEATHLM  320 (431)
Q Consensus       242 ~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~-~~~i~~~yg~tE~~~~~  320 (431)
                      ..+++.++++++|++..+|++++.++....    ..++++|.+++|||++++++.+.|.+.+ +++++|.||+||++..+
T Consensus      3950 ~~l~~~~~~~~vt~~~~~Ps~~~~l~~~~~----~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~ 4025 (4334)
T PRK05691       3950 QGLLAHVQAQGITVLESVPSLIQGMLAEDR----QALDGLRWMLPTGEAMPPELARQWLQRYPQIGLVNAYGPAECSDDV 4025 (4334)
T ss_pred             HHHHHHHHHcCCeEEEeCHHHHHHHHhhcc----ccCCCceEEEecCCcCCHHHHHHHHHhCCCCeEEeCccCccceeEE
Confidence            999999999999999999999998875432    2368999999999999999999998876 78999999999999876


Q ss_pred             cCCCCCC-CCCCCCCCccccc-cceEEEECCCCCcCCCCceeeEEEeCCccccccccCcchhhhccc--------CCcee
Q 014065          321 SSNPLPE-DGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFL--------FGWFH  390 (431)
Q Consensus       321 ~~~~~~~-~~~~~~~~~G~~~-~~~~~i~d~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~--------~g~~~  390 (431)
                      +...... .......++|+|+ |+.+.|+|+.++++|.|.+|||+|+|+++++||+++++.+++.|.        ++||+
T Consensus      4026 ~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~~~~~p~g~~GEL~i~G~~v~~GY~~~~~~t~~~f~~~p~~~~~~~~yr 4105 (4334)
T PRK05691       4026 AFFRVDLASTRGSYLPIGSPTDNNRLYLLDEALELVPLGAVGELCVAGTGVGRGYVGDPLRTALAFVPHPFGAPGERLYR 4105 (4334)
T ss_pred             EEEEcccccccCCcCCCCCccCCCEEEEECCCCCCCCCCCceEEEEecccccccccCCcccchhhcccCCCCCCCceeec
Confidence            6543221 1123345799999 899999999999999999999999999999999999999998884        35999


Q ss_pred             cCceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          391 TGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       391 TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      |||+|++++||.++++||.|++||++|++|.+.|||.+.
T Consensus      4106 TGDl~~~~~dG~l~~~GR~d~qvki~G~riel~eIE~~l 4144 (4334)
T PRK05691       4106 TGDLARRRSDGVLEYVGRIDHQVKIRGYRIELGEIEARL 4144 (4334)
T ss_pred             cCcceeecCCCcEEEecccCCcEEeceEEecHHHHHHHH
Confidence            999999999999999999999999999999999999863

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1

Probab=100.00  E-value=1.1e-56  Score=436.79  Aligned_cols=405  Identities=22%  Similarity=0.313  Sum_probs=337.1

Q ss_pred             cHHHHHHHHHHhcCCcceEEecCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcEEEe
Q 014065            5 TLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAP   84 (431)
Q Consensus         5 tl~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~   84 (431)
                      ++.+.|.+.|+.+|+++|+...+ +++||+||.++++++|+.|.+.|+++||+|+++++|+.+++++++||+++|++++|
T Consensus         1 ~~~~~l~~~a~~~p~~~a~~~~~-~~~ty~el~~~~~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~v~   79 (502)
T TIGR01734         1 KLIEAIQAFAETYPQTIAYRYQG-QELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSIKSGHAYIP   79 (502)
T ss_pred             CHHHHHHHHHHHCCCceEEEcCC-cEEeHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCEEeC
Confidence            57899999999999999998655 69999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCcccccccccccchhhhhhhccccccccccccCCCCCCCeE
Q 014065           85 LNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVA  164 (431)
Q Consensus        85 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (431)
                      +++.++.+++.++++..+++.++++.+.......      ..  .+.+...      ..... ............+++.+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~------~~--~~~~~~~------~~~~~-~~~~~~~~~~~~~~~~~  144 (502)
T TIGR01734        80 VDTSIPSERIEMIIEAAGPELVIHTAELSIDAVG------TQ--IITLSAL------EQAET-SGGPVSFDHAVKGDDNY  144 (502)
T ss_pred             CCCcChHHHHHHHHHhcCCCEEEecccccccccC------Cc--eEEchHh------hhhhh-hcCCccccccCCCCCeE
Confidence            9999999999999999999999998764322110      00  1101000      00000 00001112234578899


Q ss_pred             EEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCCCC-CCChhh
Q 014065          165 LFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAG-RFSAST  243 (431)
Q Consensus       165 ~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~-~~~~~~  243 (431)
                      +++|||||||.||+|.++|.++...+......++...+++++..+|++|..++.. ++.++..|+++++.+.. ..++..
T Consensus       145 ~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~  223 (502)
T TIGR01734       145 YIIYTSGSTGNPKGVQISHDNLVSFTNWMLADFPLSEGKQFLNQAPFSFDLSVMD-LYPCLASGGTLHCLDKDITNNFKL  223 (502)
T ss_pred             EEEECCCCCCCCCEEEEecHHHHHHHHHHHHhCCCCCCceEEeecCceechhHHH-HHHHHHCCCEEEEcCHHHhcCHHH
Confidence            9999999999999999999999988888888888899999999999999998865 88999999999987632 247899


Q ss_pred             HHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHh-CCceecccCcccccCcccC
Q 014065          244 FWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVLEAYAMTEATHLMSS  322 (431)
Q Consensus       244 ~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~-~~~i~~~yg~tE~~~~~~~  322 (431)
                      +++.+.+++++.+..+|.+++.++..... ....+++++.++++|++++++..+++.+.+ ++++++.||+||++..++.
T Consensus       224 ~~~~i~~~~~~~~~~~p~~~~~~l~~~~~-~~~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~  302 (502)
T TIGR01734       224 LFEELPKTGLNVWVSTPSFVDMCLLDPNF-NQENYPHLTHFLFCGEELPVKTAKALLERFPKATIYNTYGPTEATVAVTS  302 (502)
T ss_pred             HHHHHHHcCCeEEEEChhHHHHHHhcccc-ccccCCcccEEEEcCCcCCHHHHHHHHHHCCCcEEEeCccCCcceEEEEE
Confidence            99999999999999999999887655332 233478999999999999999999999988 7899999999998764443


Q ss_pred             CCCCC--CCCCCCCCccccc-cceEEEECCCCCcCCCCceeeEEEeCCccccccccCcchhhhccc--C--CceecCceE
Q 014065          323 NPLPE--DGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFL--F--GWFHTGDIG  395 (431)
Q Consensus       323 ~~~~~--~~~~~~~~~G~~~-~~~~~i~d~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~--~--g~~~TGD~~  395 (431)
                      .....  .......++|+|. +++++|+|+++++++.|+.|||+++|+.++.||+++++.+...|.  +  +||+|||+|
T Consensus       303 ~~~~~~~~~~~~~~~vg~~~~~~~~~i~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~TGDlg  382 (502)
T TIGR01734       303 VKITQEILDQYPRLPIGFAKPDMNLFIMDEEGEPLPEGEKGEIVIVGPSVSKGYLNNPEKTAEAFFSHEGQPAYRTGDAG  382 (502)
T ss_pred             EEccccccccCCccccccccCCCEEEEECCCCCCCCCCCeeEEEEccccccccccCCcccchHhheeCCCcEEEECCCEE
Confidence            22111  1233445799998 899999999999999999999999999999999999988877663  2  599999999


Q ss_pred             EEcCCCeEEEecccccceecCCeeccccceecc
Q 014065          396 YFDSDGYLHLVGRIKELINRGGNLHESISLFLA  428 (431)
Q Consensus       396 ~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a  428 (431)
                      ++|++ ++++.||.+|+|+.+|++|+|.+||.+
T Consensus       383 ~~~~~-~l~i~GR~~d~i~~~G~~v~~~~IE~~  414 (502)
T TIGR01734       383 TITDG-QLFYQGRLDFQIKLHGYRIELEDIEFN  414 (502)
T ss_pred             EEECC-EEEEeccccCeEEECcEEeCHHHHHHH
Confidence            99977 999999999999999999999999975

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.

>PRK06018 putative acyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.3e-56  Score=436.31  Aligned_cols=418  Identities=23%  Similarity=0.328  Sum_probs=333.9

Q ss_pred             ccHHHHHHHHHHhcCCcceEEec--C-CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCc
Q 014065            4 VTLIGLLNQVIDQFSSKRALSVS--G-KFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARA   80 (431)
Q Consensus         4 ~tl~~~l~~~a~~~p~~~a~~~~--~-~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~   80 (431)
                      +|+.++|++.|+++|++++++..  + .+++||+||.++++++|++|.+.|+++||+|+++++|+++++++++||+++|+
T Consensus        10 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~   89 (542)
T PRK06018         10 LLCHRIIDHAARIHGNREVVTRSVEGPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYGIMGIGA   89 (542)
T ss_pred             CCHHHHHHHHHHhCCCceEEEeeccCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHHHhcCe
Confidence            78999999999999999999852  2 26899999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCcccccccccccch--------hhhhhhccccccccc
Q 014065           81 TAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADS--------ELTLSLAHSESDTNA  152 (431)
Q Consensus        81 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~  152 (431)
                      +++|+++..+.+++.++++.++++.++++.+..+.+.+...........+...+...        ...+........ ..
T Consensus        90 ~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  168 (542)
T PRK06018         90 ICHTVNPRLFPEQIAWIINHAEDRVVITDLTFVPILEKIADKLPSVERYVVLTDAAHMPQTTLKNAVAYEEWIAEAD-GD  168 (542)
T ss_pred             EeeccccccCHHHHHHHHhccCCCEEEEccccHHHHHHHHhhCCCccEEEEecccccccccCccccccHHHHhccCC-cc
Confidence            999999999999999999999999999998877666655443321111111111100        000000000000 01


Q ss_pred             cccCCCCCCCeEEEEeccCCCCCCCeeeechHHHH-H-HHHHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCE
Q 014065          153 ISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLA-A-SVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAA  230 (431)
Q Consensus       153 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~-~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~  230 (431)
                      ........+++++++|||||||.||+|.++|.+.+ . ........+++..+++++..+|++|.+++.. .+.++..|++
T Consensus       169 ~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~h~~~~~~-~~~~~~~g~~  247 (542)
T PRK06018        169 FAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDALGTSAADTMLPVVPLFHANSWGI-AFSAPSMGTK  247 (542)
T ss_pred             cCcccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhcCCCCCCEEEEecCHHHHhhhHH-HHhhhhcCce
Confidence            11123456789999999999999999999999743 2 2223345667889999999999999988876 5678899999


Q ss_pred             EEeCCCCCCChhhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHhCCceecc
Q 014065          231 VTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEA  310 (431)
Q Consensus       231 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~i~~~  310 (431)
                      ++++.. .+++..+++.++++++|.+.++|+.++.+.++.... ..+++++|.++++|+++++++.+++++ +++++++.
T Consensus       248 ~v~~~~-~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~-~~~~~~lr~~~~~G~~l~~~~~~~~~~-~~~~~~~~  324 (542)
T PRK06018        248 LVMPGA-KLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKE-GLKLPHLKMVVCGGSAMPRSMIKAFED-MGVEVRHA  324 (542)
T ss_pred             EEccCc-CCCHHHHHHHHHhcCCceeecCcHHHHHHHhccccc-CCCcccceEEEEcCCCCCHHHHHHHHH-hCCCeEee
Confidence            988653 678899999999999999999999999998766433 234789999999999999999999999 89999999


Q ss_pred             cCcccccCcccCCCCCCC--------CCCCCCCccccc-cceEEEECCCCCcCCCC--ceeeEEEeCCccccccccCcch
Q 014065          311 YAMTEATHLMSSNPLPED--------GPHKPGSVGRPV-GQEIAILDEIGVPQEGG--AKGEVCIRGPNVTKGYKNNPEA  379 (431)
Q Consensus       311 yg~tE~~~~~~~~~~~~~--------~~~~~~~~G~~~-~~~~~i~d~~~~~~~~~--~~Gel~v~~~~~~~gy~~~~~~  379 (431)
                      ||+||++.+.........        ......++|+|. +++++|+|+++++++.+  ..|||+++|++++.||++... 
T Consensus       325 YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~i~v~d~~~~~~~~~~~~~Gel~i~g~~~~~gy~~~~~-  403 (542)
T PRK06018        325 WGMTEMSPLGTLAALKPPFSKLPGDARLDVLQKQGYPPFGVEMKITDDAGKELPWDGKTFGRLKVRGPAVAAAYYRVDG-  403 (542)
T ss_pred             ecccccCcccccccCccccccCCchhhhhccccCCCCCCCcEEEEECCCCCCCCCCCCceeEEEEecCCcchhhhcCcc-
Confidence            999999977654322111        011235789998 79999999999888753  679999999999999998322 


Q ss_pred             hhhcccCCceecCceEEEcCCCeEEEecccccceecCCeeccccceecc
Q 014065          380 NKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLA  428 (431)
Q Consensus       380 ~~~~~~~g~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a  428 (431)
                       .....+|||+|||+++++++|++++.||.+|+|+++|++++|.|||.+
T Consensus       404 -~~~~~~~~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~eIE~~  451 (542)
T PRK06018        404 -EILDDDGFFDTGDVATIDAYGYMRITDRSKDVIKSGGEWISSIDLENL  451 (542)
T ss_pred             -cEecCCcEEEcCCEEEEcCCccEEEEecCCCeEEECCEEECHHHHHHH
Confidence             112246899999999999999999999999999999999999999975

>PRK13390 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.9e-56  Score=434.48  Aligned_cols=405  Identities=25%  Similarity=0.303  Sum_probs=321.7

Q ss_pred             HHHHhcCCcceEEec-CCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcEEEecCCCCC
Q 014065           12 QVIDQFSSKRALSVS-GKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT   90 (431)
Q Consensus        12 ~~a~~~p~~~a~~~~-~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~   90 (431)
                      .+|+++|+++|+++. +++++||+||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++|++++|+++.++
T Consensus         5 ~~a~~~p~~~a~~~~~~~~~lTy~el~~~~~~la~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~Ga~~~~l~~~~~   84 (501)
T PRK13390          5 THAQIAPDRPAVIVAETGEQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGLYITAINHHLT   84 (501)
T ss_pred             hhhhhCCCCcEEEecCCCeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEeccccCCC
Confidence            467889999999864 3579999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCccccccccccc-chhhhhhhccccccccccccCCCCCCCeEEEEec
Q 014065           91 PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDA-DSELTLSLAHSESDTNAISKLTNDPSDVALFLHT  169 (431)
Q Consensus        91 ~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~T  169 (431)
                      .+++.++++.++++.++++................   .+.+... .....+..... .    ........++.++++||
T Consensus        85 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~a~i~~T  156 (501)
T PRK13390         85 APEADYIVGDSGARVLVASAALDGLAAKVGADLPL---RLSFGGEIDGFGSFEAALA-G----AGPRLTEQPCGAVMLYS  156 (501)
T ss_pred             HHHHHHHHHhcCCcEEEEcchhhhHHHHhhhccce---EEEecCcccccccHHHHhc-c----cCCCCCCCcccEEEEeC
Confidence            99999999999999999987643332222111110   0000000 00000000000 0    00011122357999999


Q ss_pred             cCCCCCCCeeee--chHHHHHHH----HHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCCCCCCChhh
Q 014065          170 SGTTSRPKGVPL--TQNNLAASV----SNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSAST  243 (431)
Q Consensus       170 SGtTG~pK~v~~--s~~~l~~~~----~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~  243 (431)
                      |||||.||+|.+  +|.++....    ......+++..+++++..+|++|..++.. ....+..|+++++.+  .+++..
T Consensus       157 SGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~~~~-~~~~~~~g~~~~~~~--~~~~~~  233 (501)
T PRK13390        157 SGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFYDISESDIYYSSAPIYHAAPLRW-CSMVHALGGTVVLAK--RFDAQA  233 (501)
T ss_pred             CCCCCCCCEEEeeccccccccchhhhHhhHHHHhCCCCCCeEEecccchhhhHHHH-HHHHHhcCceEEEcC--CcCHHH
Confidence            999999999996  444443321    11234567888999999999999988765 344567899999876  678999


Q ss_pred             HHHHHHHhcceeeecchHHHHHHHhcccC-CCCCCCCCccEEEeccCCCcHHHHHHHHHHhCCceecccCcccccCcccC
Q 014065          244 FWQDMIKYNATWYTAVPTIHQIVLDRHVA-KPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSS  322 (431)
Q Consensus       244 ~~~~i~~~~~t~~~~~p~~~~~l~~~~~~-~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~  322 (431)
                      +++.|+++++|++.++|+++..+.+.... ....+++++|.++.+|+++++++.+.+.+.++..+++.||+||+++++..
T Consensus       234 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~  313 (501)
T PRK13390        234 TLGHVERYRITVTQMVPTMFVRLLKLDADVRTRYDVSSLRAVIHAAAPCPVDVKHAMIDWLGPIVYEYYSSTEAHGMTFI  313 (501)
T ss_pred             HHHHHHHcCCeEEEecHHHHHHHHhccchhcccCChhhhheEEEcCCCCCHHHHHHHHHhcCCceeeeecccccCceEEe
Confidence            99999999999999999999998865432 12334679999999999999999999999889999999999999875544


Q ss_pred             CCCCCCCCCCCCCccccccceEEEECCCCCcCCCCceeeEEEeCCccccccccCcchhhhccc---CCceecCceEEEcC
Q 014065          323 NPLPEDGPHKPGSVGRPVGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFL---FGWFHTGDIGYFDS  399 (431)
Q Consensus       323 ~~~~~~~~~~~~~~G~~~~~~~~i~d~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~---~g~~~TGD~~~~~~  399 (431)
                      ..  .......+++|+|++..++++|++|++++.|+.|||++++++++.||+++++.+.+.+.   ++|++|||+|++|+
T Consensus       314 ~~--~~~~~~~~~~G~~~~g~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~~~~~~~w~~tGDl~~~~~  391 (501)
T PRK13390        314 DS--PDWLAHPGSVGRSVLGDLHICDDDGNELPAGRIGTVYFERDRLPFRYLNDPEKTAAAQHPAHPFWTTVGDLGSVDE  391 (501)
T ss_pred             cc--hhhccCCCCcCCcccceEEEECCCCCCCCCCCceEEEEecCCccccccCChhhhHHhhccCCCceEEcCceEEECC
Confidence            32  12234567899999337999999999999999999999999999999999998887763   57999999999999


Q ss_pred             CCeEEEecccccceecCCeeccccceeccc
Q 014065          400 DGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       400 ~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      ||++++.||.||+||++|.+|+|.|||.+.
T Consensus       392 dg~l~~~gR~~~~i~~~G~~v~p~eIE~~l  421 (501)
T PRK13390        392 DGYLYLADRKSFMIISGGVNIYPQETENAL  421 (501)
T ss_pred             CCeEEEeeccccceeECCeeeCHHHHHHHH
Confidence            999999999999999999999999999763

>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=9.3e-58  Score=407.05  Aligned_cols=423  Identities=27%  Similarity=0.377  Sum_probs=342.9

Q ss_pred             ccHHHHHHHHHHhcCCcceEEecC----------------------CCcccHHHHHHHHHHHHHHHHHcCCCCCCE-EEE
Q 014065            4 VTLIGLLNQVIDQFSSKRALSVSG----------------------KFDLTYSRIHELVERAASRLVAAGINAGDV-VAL   60 (431)
Q Consensus         4 ~tl~~~l~~~a~~~p~~~a~~~~~----------------------~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~-V~i   60 (431)
                      -|+.+++++.++++.++.++-+.+                      ...+||.|+..++.++|++|...|++++++ |+|
T Consensus        41 ~Tl~~~~~~~~~k~g~~~~mGtR~li~~h~ek~~dGK~f~k~~Lg~Y~w~sy~ev~~~~~~~gsGL~~lG~k~~e~k~~i  120 (678)
T KOG1180|consen   41 STLYELFEECVKKFGKKDAMGTRELIKEHEEKQVDGKTFEKYELGDYKWMSYNEVYERVHNFGSGLVKLGLKPKETKIAI  120 (678)
T ss_pred             ccHHHHHHHHHHhcCCCccccHHHHHHHHhhccCCCeEEEEEeccceeeecHHHHHHHHHHHHHHHHHhCCCCCCCeEEE
Confidence            478999999999999999985431                      156899999999999999999999998776 999


Q ss_pred             ECCCcHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCcccccccccccc----
Q 014065           61 TFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDAD----  136 (431)
Q Consensus        61 ~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  136 (431)
                      +++.+.+|+++++||++.+...|.+..++..+.+.|-|++++++.+|++.+..+.+....+.......++.+.+.+    
T Consensus       121 Fa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl~Et~~~~i~T~~~LL~kl~~~l~~~~~vk~II~~d~id~~~~  200 (678)
T KOG1180|consen  121 FAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHSLNETESTAIFTDSELLPKLKAPLKQAKTVKHIIYFDPIDYDAA  200 (678)
T ss_pred             EecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhhhccccceEEEeCHHHHHHHHHHHhccCceeEEEEecCCCCccc
Confidence            9999999999999999999999999999999999999999999999999998887766666555444444443211    


Q ss_pred             -hhh-----------hhhhccccccccccccCCCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHh-cCCCCC
Q 014065          137 -SEL-----------TLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVY-KLTESD  203 (431)
Q Consensus       137 -~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~-~~~~~~  203 (431)
                       +..           .++...........++.++.++|+|+|+|||||||.||||+++|.|+++.+....... .+.+.|
T Consensus       201 ~~~v~~i~~p~i~i~Sf~~v~~lG~~~~~~~~~P~p~Dia~IMYTSGSTG~PKGVml~H~NiVA~~~G~~~~v~~lg~~D  280 (678)
T KOG1180|consen  201 KDDVNSIVRPDIKIISFDDVEKLGKENEIPPHPPKPSDIACIMYTSGSTGLPKGVMLTHSNIVAGVTGVGENVPELGPKD  280 (678)
T ss_pred             hhhhhhhccCCeEEEEHHHHHhhCCcCCCCCCCCCCCceEEEEEcCCCCCCCceEEEecccHHhhhhhhcccCcccCCCc
Confidence             111           1111111112222334445789999999999999999999999999999988777665 678999


Q ss_pred             eEEEecChhhHHHHHHHHHHHHhcCCEEEeCCCCCC-C-----hhhHHHHHHHhcceeeecchHHHHHHHhcccCC----
Q 014065          204 STVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRF-S-----ASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAK----  273 (431)
Q Consensus       204 ~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~-~-----~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~----  273 (431)
                      +++.++|+.|.+.+.+ =+.+++.|+.+-..+...+ |     ...---.+..++||.|.++|..|+++.+...++    
T Consensus       281 ~yi~yLPLAHIlEl~a-E~~~ft~G~~iGY~S~~TLtdts~ki~kg~kGD~~~lkPTiM~~VpAV~drVrKgVl~kV~~~  359 (678)
T KOG1180|consen  281 RYIAYLPLAHILELTA-ELVCFTWGGRIGYSSPLTLTDTSSKIKKGCKGDLTELKPTIMAAVPAVMDRVRKGVLSKVNAM  359 (678)
T ss_pred             eEEEechHHHHHHHHH-HHHHHhhCCEeecCCcceecccchhhccCCcCccccccchhhhhhHHHHHHHHHHHHHHHhhc
Confidence            9999999999999988 6788999999987653222 1     111223456789999999999999987632111    


Q ss_pred             -------------------------------------CCCCCCCccEEEeccCCCcHHHHHHHHHHhCCceecccCcccc
Q 014065          274 -------------------------------------PEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEA  316 (431)
Q Consensus       274 -------------------------------------~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~i~~~yg~tE~  316 (431)
                                                           +...-.++|.+++||++++++..+.+.-.+.+++.++||.||+
T Consensus       360 ~~~~k~lF~~aY~~K~~~~~~~g~~s~~ld~lVFkKIr~~lGG~lR~~LsGGapLS~dtQrF~nic~C~Pv~qGYGLTEt  439 (678)
T KOG1180|consen  360 PGLQKKLFWTAYERKLSLIERNGPGSPLLDALVFKKIRALLGGNLRYILSGGAPLSPDTQRFMNICFCCPVLQGYGLTET  439 (678)
T ss_pred             hHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHhCCceEEEEeCCCCCCHHHHHHHHHhccccccccccccch
Confidence                                                 0112368999999999999999999998889999999999999


Q ss_pred             cCcccCCCCCCCCCCCCCCccccc-cceEEEEC-CCCCcCCCC--ceeeEEEeCCccccccccCcchhhhccc--CC--c
Q 014065          317 THLMSSNPLPEDGPHKPGSVGRPV-GQEIAILD-EIGVPQEGG--AKGEVCIRGPNVTKGYKNNPEANKSAFL--FG--W  388 (431)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d-~~~~~~~~~--~~Gel~v~~~~~~~gy~~~~~~~~~~~~--~g--~  388 (431)
                      +...+....   .....+.+|.|+ .++++++| ++|--...+  ..||||++|++++.||+++++.+++.|.  +|  |
T Consensus       440 ca~~tv~e~---~d~~~g~vG~pl~c~eiKLvdw~EgGY~~~~~PPrGEI~i~G~~vt~gY~kn~ekT~e~ft~~~G~~W  516 (678)
T KOG1180|consen  440 CAAATVLEP---EDFSTGRVGAPLPCCEIKLVDWEEGGYFAKNKPPRGEILIGGPNVTMGYYKNEEKTKEDFTVEDGQRW  516 (678)
T ss_pred             hcccEecCh---hhcccccccCCccceEEEEEEhhhcCccCCCCCCCceEEecCCccChhhhCChhhhhhhceecCCcEE
Confidence            877666543   456667999999 59999999 664333322  4799999999999999999999999993  68  9


Q ss_pred             eecCceEEEcCCCeEEEeccccccee-cCCeeccccceecccc
Q 014065          389 FHTGDIGYFDSDGYLHLVGRIKELIN-RGGNLHESISLFLAKF  430 (431)
Q Consensus       389 ~~TGD~~~~~~~g~l~~~gR~~d~i~-~~G~~i~~~~iE~a~~  430 (431)
                      |+|||+|++.+||.|.+.+|++|.+| .+|+-|+.+.||.|.+
T Consensus       517 F~TGDIGe~~pdG~LkIIDRKKdLVKlq~GEYIsL~KvEa~l~  559 (678)
T KOG1180|consen  517 FRTGDIGEFHPDGCLKIIDRKKDLVKLQNGEYISLGKVEAALR  559 (678)
T ss_pred             EeccccceecCCCcEEEeechhhhhhhcccceeehHHHHHHHh
Confidence            99999999999999999999999999 6899999999999865

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=1.4e-56  Score=515.83  Aligned_cols=407  Identities=23%  Similarity=0.328  Sum_probs=346.2

Q ss_pred             cccHHHHHHHHHHhcCCcceEEecCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcEE
Q 014065            3 GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATA   82 (431)
Q Consensus         3 ~~tl~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~   82 (431)
                      ..++.++|+++++++|+++|+.+.+ .++||+||.++++++|+.|++.|+++|++|+++++++++++++++|++++|+++
T Consensus      1130 ~~~l~~~~~~~a~~~p~~~Al~~~~-~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~s~~~iv~~lailkaG~~~ 1208 (4334)
T PRK05691       1130 QAWLPELLNEQARQTPERIALVWDG-GSLDYAELHAQANRLAHYLRDKGVGPDVCVAIAAERSPQLLVGLLAILKAGGAY 1208 (4334)
T ss_pred             cCCHHHHHHHHHHhCCCCeEEEECC-ceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEE
Confidence            3579999999999999999999765 699999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCcccccccccccchhhhhhhccccccccccccCCCCCCC
Q 014065           83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSD  162 (431)
Q Consensus        83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (431)
                      +|++|.++.+++.++++.++++++|++......+....   ..  ..+.....    ...     ......+.....+++
T Consensus      1209 vpld~~~p~~rl~~il~~~~~~~vi~~~~~~~~~~~~~---~~--~~~~~~~~----~~~-----~~~~~~~~~~~~~~~ 1274 (4334)
T PRK05691       1209 VPLDPDYPAERLAYMLADSGVELLLTQSHLLERLPQAE---GV--SAIALDSL----HLD-----SWPSQAPGLHLHGDN 1274 (4334)
T ss_pred             EecCcCChHHHHHHHHHhcCCCEEEecchhhhhccccc---Cc--eEEeeccc----ccc-----ccCCCCCCCCCCCCC
Confidence            99999999999999999999999999876443221100   00  00000000    000     000111122345789


Q ss_pred             eEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCCC-CCCCh
Q 014065          163 VALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAA-GRFSA  241 (431)
Q Consensus       163 ~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~-~~~~~  241 (431)
                      +++++|||||||.||||.++|+++.+.+......+++.++++++...|++|..+++. ++.+|..|+++++.+. ...++
T Consensus      1275 ~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~s~~~-~~~~L~~G~~l~i~~~~~~~~~ 1353 (4334)
T PRK05691       1275 LAYVIYTSGSTGQPKGVGNTHAALAERLQWMQATYALDDSDVLMQKAPISFDVSVWE-CFWPLITGCRLVLAGPGEHRDP 1353 (4334)
T ss_pred             eEEEEEcCCCCCCCceeEeecHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHH-HHHHHhCCCEEEEcCccccCCH
Confidence            999999999999999999999999999988888899999999999999999988876 8899999999999753 24689


Q ss_pred             hhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHh-CCceecccCcccccCcc
Q 014065          242 STFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVLEAYAMTEATHLM  320 (431)
Q Consensus       242 ~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~-~~~i~~~yg~tE~~~~~  320 (431)
                      ..+++.++++++|++.++|++++.+.+....   ..++++|.+++|||++++++.+.+.+.+ +++++|.||+||++..+
T Consensus      1354 ~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~---~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~ 1430 (4334)
T PRK05691       1354 QRIAELVQQYGVTTLHFVPPLLQLFIDEPLA---AACTSLRRLFSGGEALPAELRNRVLQRLPQVQLHNRYGPTETAINV 1430 (4334)
T ss_pred             HHHHHHHHHcCCeEEECcHHHHHHHHhCccc---ccCCcccEEEEeecCCCHHHHHHHHHhCCCcEEEeCCCcChheeee
Confidence            9999999999999999999999998765322   2478999999999999999999999887 68999999999998776


Q ss_pred             cCCCCCCCCCCCCCCccccc-cceEEEECCCCCcCCCCceeeEEEeCCccccccccCcchhhhcccC--------Cceec
Q 014065          321 SSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF--------GWFHT  391 (431)
Q Consensus       321 ~~~~~~~~~~~~~~~~G~~~-~~~~~i~d~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~--------g~~~T  391 (431)
                      +..... .......++|+|+ ++.++|+|+++++++.|+.|||+|+|+++++||+++++.+++.|..        +||+|
T Consensus      1431 ~~~~~~-~~~~~~~~iG~p~~~~~~~i~d~~~~~vp~G~~GEL~i~G~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrT 1509 (4334)
T PRK05691       1431 THWQCQ-AEDGERSPIGRPLGNVLCRVLDAELNLLPPGVAGELCIGGAGLARGYLGRPALTAERFVPDPLGEDGARLYRT 1509 (4334)
T ss_pred             eeeecc-cccCCCCcccceeCCCEEEEECCCCCCCCCCCceEEEecCcccchhhcCCccccHhhCCCCCCCCCCceEEEc
Confidence            543221 1233456899999 7999999999999999999999999999999999999999988742        49999


Q ss_pred             CceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          392 GDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       392 GD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      ||+|++++||.++++||+|++||++|++|+|.|||.+.
T Consensus      1510 GDl~~~~~dG~l~~~GR~d~qiki~G~rie~~eIE~~l 1547 (4334)
T PRK05691       1510 GDRARWNADGALEYLGRLDQQVKLRGFRVEPEEIQARL 1547 (4334)
T ss_pred             cceEEECCCCCEEEecccCcEEEECCEEcCHHHHHHHH
Confidence            99999999999999999999999999999999999863

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=100.00  E-value=4.1e-56  Score=470.83  Aligned_cols=412  Identities=23%  Similarity=0.288  Sum_probs=330.7

Q ss_pred             ccHHHHHHHHHHhcCC-cceEEecCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcEE
Q 014065            4 VTLIGLLNQVIDQFSS-KRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATA   82 (431)
Q Consensus         4 ~tl~~~l~~~a~~~p~-~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~   82 (431)
                      .++.+.+.+.++++|+ +.++.+.+++++||+||+++++++|+.|++ |+++||+|+++++|+++++++++||+++|+++
T Consensus       631 ~~~~~~l~~~~~~~~~~~~ai~~~~~~~~Ty~el~~~~~~lA~~L~~-g~~~gd~V~i~~~n~~~~~~~~la~~~~G~v~  709 (1140)
T PRK06814        631 RTLFEALIEAAKIHGFKKLAVEDPVNGPLTYRKLLTGAFVLGRKLKK-NTPPGENVGVMLPNANGAAVTFFALQSAGRVP  709 (1140)
T ss_pred             CCHHHHHHHHHHHcCCCCeEeECCCCCccCHHHHHHHHHHHHHHHHh-cCCCCCeEEEEcCCchHHHHHHHHHHHCCCEE
Confidence            5678889999999975 566654456799999999999999999975 99999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHhcCCceEEEecCCchhHH--HHHHHhcCcccccccccccchhh----hhhhccccccccccccC
Q 014065           83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAA--QAAASKLNISHATATLLDADSEL----TLSLAHSESDTNAISKL  156 (431)
Q Consensus        83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~  156 (431)
                      +|++|..+.+++.+++++++++.++++++..+..  .............+...+.....    .+..... .........
T Consensus       710 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  788 (1140)
T PRK06814        710 AMINFSAGIANILSACKAAQVKTVLTSRAFIEKARLGPLIEALEFGIRIIYLEDVRAQIGLADKIKGLLA-GRFPLVYFC  788 (1140)
T ss_pred             EEcCCCCCHHHHHHHHHHcCCCEEEecHHHHhhhcchhHHHHhccCceEEEehHhhccCChHHHHHHHhh-ccCCccccC
Confidence            9999999999999999999999999987643321  11111111111111111100000    0000000 000001111


Q ss_pred             CCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCCC
Q 014065          157 TNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAA  236 (431)
Q Consensus       157 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~  236 (431)
                      ...++++++++|||||||.||+|.++|+++..++......+++.++|++++.+|++|.+++...++.++..|+++++.+.
T Consensus       789 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~  868 (1140)
T PRK06814        789 NRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARIDFSPEDKVFNALPVFHSFGLTGGLVLPLLSGVKVFLYPS  868 (1140)
T ss_pred             CCCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHHhhCCCCcCEEEEecchHHHHHHHHHHHHHHHcCCEEEEecC
Confidence            34678999999999999999999999999999888888888999999999999999999997778999999999998763


Q ss_pred             CCCChhhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHhCCceecccCcccc
Q 014065          237 GRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEA  316 (431)
Q Consensus       237 ~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~i~~~yg~tE~  316 (431)
                       ..+...+.+.++++++|++..+|++++.+.+...   ..+++++|.+++||+++++++.+.+.+.+++++++.||+||+
T Consensus       869 -~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~---~~~~~~lr~v~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~  944 (1140)
T PRK06814        869 -PLHYRIIPELIYDTNATILFGTDTFLNGYARYAH---PYDFRSLRYVFAGAEKVKEETRQTWMEKFGIRILEGYGVTET  944 (1140)
T ss_pred             -cccHHHHHHHHHhcCCEEEEecHHHHHHHHhhcc---cccccceeEEEEcCCcCCHHHHHHHHHHhCCcEEeccccccc
Confidence             4566778899999999999999999998876532   344789999999999999999999999999999999999999


Q ss_pred             cCcccCCCCCCCCCCCCCCccccc-cceEEEECCCCCcCCCCceeeEEEeCCccccccccCcchhh-hcccCCceecCce
Q 014065          317 THLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANK-SAFLFGWFHTGDI  394 (431)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~-~~~~~g~~~TGD~  394 (431)
                      +..+..+..   .....+++|+|. ++++++.+.++    .++.|||+++|++++.||+++++... ....+|||+|||+
T Consensus       945 ~~~~~~~~~---~~~~~~~vG~p~~g~~~~~~~~~~----~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl 1017 (1140)
T PRK06814        945 APVIALNTP---MHNKAGTVGRLLPGIEYRLEPVPG----IDEGGRLFVRGPNVMLGYLRAENPGVLEPPADGWYDTGDI 1017 (1140)
T ss_pred             cceEEecCC---CCCCCCcCCccCCCCeEEEeecCC----CCCceEEEEeCCCcchhhcCCCCCCccccCCCCeEecCCE
Confidence            877655432   234567899999 79999987543    35779999999999999998754322 2235799999999


Q ss_pred             EEEcCCCeEEEecccccceecCCeeccccceecc
Q 014065          395 GYFDSDGYLHLVGRIKELINRGGNLHESISLFLA  428 (431)
Q Consensus       395 ~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a  428 (431)
                      +++|+||++++.||.||+||++|++|+|.|||.+
T Consensus      1018 ~~~d~dG~l~~~GR~~d~i~~~G~~v~~~eIE~~ 1051 (1140)
T PRK06814       1018 VTIDEEGFITIKGRAKRFAKIAGEMISLAAVEEL 1051 (1140)
T ss_pred             EEECCCCeEEEEecccCeeeeCCEEECHHHHHHH
Confidence            9999999999999999999999999999999976

>PRK13391 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.2e-55  Score=427.81  Aligned_cols=409  Identities=23%  Similarity=0.276  Sum_probs=329.9

Q ss_pred             HHHHHhcCCcceEEec-CCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcEEEecCCCC
Q 014065           11 NQVIDQFSSKRALSVS-GKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAY   89 (431)
Q Consensus        11 ~~~a~~~p~~~a~~~~-~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~   89 (431)
                      ..+++++|+++|+++. +++.+||.||.++++++|++|++.|+++|++|+++++|+++++++++||+++|++++++++.+
T Consensus         4 ~~~a~~~p~~~a~~~~~~~~~~ty~~l~~~~~~la~~L~~~g~~~~~~V~v~~~~~~~~~~~~~a~~~~G~~~~~l~~~~   83 (511)
T PRK13391          4 GIHAQTTPDKPAVIMASTGEVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVNSHL   83 (511)
T ss_pred             hhhHhhCCCceEEEecCCCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhccEEecccccc
Confidence            4678899999999874 457899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCcccccccccccchhh---hhhhccccccccccccCCCCCCCeEEE
Q 014065           90 TPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSEL---TLSLAHSESDTNAISKLTNDPSDVALF  166 (431)
Q Consensus        90 ~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i  166 (431)
                      +.+++.++++.++++.++++........+...........+.........   .+....  .. . ........++.+++
T Consensus        84 ~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~-~~~~~~~~~~~a~i  159 (511)
T PRK13391         84 TPAEAAYIVDDSGARALITSAAKLDVARALLKQCPGVRHRLVLDGDGELEGFVGYAEAV--AG-L-PATPIADESLGTDM  159 (511)
T ss_pred             CHHHHHHHHhccCCcEEEEchhhHHHHHHHHhcCCCceEEEEecCCCCCcccccHHHHh--cC-C-CCCCCCCcccccEE
Confidence            99999999999999999999876655544443322111111111100000   000000  00 0 01111234567899


Q ss_pred             EeccCCCCCCCeeee--chHHHHH---HHHHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCCCCCCCh
Q 014065          167 LHTSGTTSRPKGVPL--TQNNLAA---SVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSA  241 (431)
Q Consensus       167 ~~TSGtTG~pK~v~~--s~~~l~~---~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~  241 (431)
                      +|||||||.||+|.+  +|.++..   ........+++..+++++..+|++|..++.. .+.++..|+++++.+  .+++
T Consensus       160 l~TSGtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~~~-~~~~~~~g~~~~~~~--~~~~  236 (511)
T PRK13391        160 LYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLWGFRSDMVYLSPAPLYHSAPQRA-VMLVIRLGGTVIVME--HFDA  236 (511)
T ss_pred             EECCCCCCCCCEEEEccccchhhhhhHHHHHHHHhcCCCCCCeEEEcCCHHHHHHHHH-HHHHHHcCceEEECC--CCCH
Confidence            999999999999995  4555432   2333455667888999999999999988866 677899999999987  6799


Q ss_pred             hhHHHHHHHhcceeeecchHHHHHHHhcccCC-CCCCCCCccEEEeccCCCcHHHHHHHHHHhCCceecccCcccccCcc
Q 014065          242 STFWQDMIKYNATWYTAVPTIHQIVLDRHVAK-PEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLM  320 (431)
Q Consensus       242 ~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~-~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~  320 (431)
                      ..+++.++++++|++.++|+++..+.+..... ...+++++|.+++||+++++++.+.+.+.++..+++.||+||++.+.
T Consensus       237 ~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~g~~v~~~YG~tE~~~~~  316 (511)
T PRK13391        237 EQYLALIEEYGVTHTQLVPTMFSRMLKLPEEVRDKYDLSSLEVAIHAAAPCPPQVKEQMIDWWGPIIHEYYAATEGLGFT  316 (511)
T ss_pred             HHHHHHHHHhCCeEEEehHHHHHHHHhCchhhcccCCccceeEEEEccCCCCHHHHHHHHHHcCCceeeeeccccccceE
Confidence            99999999999999999999999887654321 23347899999999999999999999998899999999999998765


Q ss_pred             cCCCCCCCCCCCCCCccccccceEEEECCCCCcCCCCceeeEEEeCCccccccccCcchhhhccc--CCceecCceEEEc
Q 014065          321 SSNPLPEDGPHKPGSVGRPVGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFL--FGWFHTGDIGYFD  398 (431)
Q Consensus       321 ~~~~~~~~~~~~~~~~G~~~~~~~~i~d~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~--~g~~~TGD~~~~~  398 (431)
                      ....  ......++++|+|+...++++|++|++++.|+.|||+++++ ++.||+++++.+...+.  ++||+|||+|+++
T Consensus       317 ~~~~--~~~~~~~~~vG~~~~g~~~i~d~~~~~~~~g~~Gel~~~g~-~~~gy~~~~~~~~~~~~~~~~w~~TGD~g~~~  393 (511)
T PRK13391        317 ACDS--EEWLAHPGTVGRAMFGDLHILDDDGAELPPGEPGTIWFEGG-RPFEYLNDPAKTAEARHPDGTWSTVGDIGYVD  393 (511)
T ss_pred             EecC--ccccccCCCcCCcccceEEEECCCCCCCCCCCceEEEEecC-cceEEcCChhHhHHhhccCCCEEecCCEEEEC
Confidence            5432  22345567899999447999999999999999999999999 88999999988877764  3899999999999


Q ss_pred             CCCeEEEecccccceecCCeeccccceeccc
Q 014065          399 SDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       399 ~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      ++|++++.||.+|++|++|.+++|.|||.+.
T Consensus       394 ~~g~l~~~gR~~~~i~~~G~~v~~~eie~~l  424 (511)
T PRK13391        394 EDGYLYLTDRAAFMIISGGVNIYPQEAENLL  424 (511)
T ss_pred             CCccEEEeccCCCEEEeCCEEECHHHHHHHH
Confidence            9999999999999999999999999999863

>PRK09192 acyl-CoA synthetase; Validated

Probab=100.00  E-value=6.9e-56  Score=437.02  Aligned_cols=415  Identities=26%  Similarity=0.365  Sum_probs=327.5

Q ss_pred             CcccHHHHHHHHHHhcCCcceEEecCC--CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhC
Q 014065            2 EGVTLIGLLNQVIDQFSSKRALSVSGK--FDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRAR   79 (431)
Q Consensus         2 ~~~tl~~~l~~~a~~~p~~~a~~~~~~--~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G   79 (431)
                      ...|+.++|+..++++|+..++...++  +.+||.||+.+++++|++|++.|+++||+|+++++|+++++++++||+++|
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA~~~~G   98 (579)
T PRK09192         19 DFPTLVEALDYAALGEAGMNFYDRRGQLEEALPYQTLRARAEAGARRLLALGLKPGDRVALIAETDGDFVEAFFACQYAG   98 (579)
T ss_pred             chhhHHHHHHHhhccCCceEEEecCCCEEEEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCchhHHHHHHHHHHcC
Confidence            456899999999998887665532222  679999999999999999999999999999999999999999999999999


Q ss_pred             cEEEecCCCCC-------HHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCcccccccccccchhhhhhhccccccccc
Q 014065           80 ATAAPLNAAYT-------PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNA  152 (431)
Q Consensus        80 ~~~v~l~~~~~-------~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (431)
                      ++++|+++..+       .+++.++++.++++++++++...+.+.........  ..  ... ...  +...   . ...
T Consensus        99 ~~~v~i~~~~~~~~~~~~~~~l~~~i~~~~~~~il~~~~~~~~~~~~~~~~~~--~~--~~~-~~~--~~~~---~-~~~  167 (579)
T PRK09192         99 LVPVPLPLPMGFGGRESYIAQLRGMLASAQPAAIITPDELLPWVNEATHGNPL--LH--VLS-HAW--FKAL---P-EAD  167 (579)
T ss_pred             CeeEeccCCcccccchHHHHHHHHHHHhcCCCEEEeChHHHHHHHHhhccccc--cc--eee-hhh--hccc---C-CCc
Confidence            99999976543       57899999999999999988765554443211110  00  000 000  0000   0 001


Q ss_pred             cccCCCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHH-HhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEE
Q 014065          153 ISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKS-VYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAV  231 (431)
Q Consensus       153 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~  231 (431)
                      .......++++++++|||||||.||+|.++|.+++..+..... .+++.++|+++..+|++|.+++...++.++..|+++
T Consensus       168 ~~~~~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~  247 (579)
T PRK09192        168 VALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGLKVRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSV  247 (579)
T ss_pred             cccCCCCCCCeEEEEecCCCCCCCceEEeeHHHHHHHHHHHHhhcccCCCCCeEEEeCCCCCcchhHHHHHHHHHhCCee
Confidence            1112345689999999999999999999999999988887776 788999999999999999999988788889999998


Q ss_pred             EeCCCCCC--ChhhHHHHHHHhcceeeecchHHHHHHHhcccCC--CCCCCCCccEEEeccCCCcHHHHHHHHHHhC---
Q 014065          232 TLPAAGRF--SASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAK--PEPVYPKLRFIRSCSASLAPVILSRLEEAFG---  304 (431)
Q Consensus       232 ~~~~~~~~--~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~--~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~---  304 (431)
                      ++.+...+  ++..+++.+.+++++.++..|..+..+.......  ...+++++|.+++||+++++.+.+.+.+.+.   
T Consensus       248 ~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~l~~~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g  327 (579)
T PRK09192        248 DYLPTRDFARRPLQWLDLISRNRGTISYSPPFGYELCARRVNSKDLAELDLSCWRVAGIGADMIRPDVLHQFAEAFAPAG  327 (579)
T ss_pred             EeeCHHHHHHCHHHHHHHHHhcCcEEEeCCcHHHHHHHHhhccccccccchhhhheeEecCccCCHHHHHHHHHHHHhcC
Confidence            76552222  6888999999999998777655555554332211  1245789999999999999999999988873   


Q ss_pred             ---CceecccCcccccCcccCCCCCCCC-------------------------CCCCCCccccc-cceEEEECCCCCcCC
Q 014065          305 ---APVLEAYAMTEATHLMSSNPLPEDG-------------------------PHKPGSVGRPV-GQEIAILDEIGVPQE  355 (431)
Q Consensus       305 ---~~i~~~yg~tE~~~~~~~~~~~~~~-------------------------~~~~~~~G~~~-~~~~~i~d~~~~~~~  355 (431)
                         ..+++.||+||++..++........                         .....++|+|+ +.+++|+|+++..++
T Consensus       328 ~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~p~~~v~i~d~~~~~~~  407 (579)
T PRK09192        328 FDDKAFMPSYGLAEATLAVSFSPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNCGKALPGHEIEIRNEAGMPLP  407 (579)
T ss_pred             CChhhcccccccccceeEEeccCCCCCceEEEEcHHHhcCCceeeccCCCCccceeEeecCCcCCCcEEEEECCCCCCCC
Confidence               3489999999998766544321100                         01124789999 899999999999999


Q ss_pred             CCceeeEEEeCCccccccccCcchhhhcc-cCCceecCceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          356 GGAKGEVCIRGPNVTKGYKNNPEANKSAF-LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       356 ~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      .++.|||+++|+.++.||+++ +.+.+.+ .+|||+|||+|++ ++|+++++||.+|+||++|++|+|.|||.+.
T Consensus       408 ~g~~Gel~i~g~~~~~gY~~~-~~~~~~~~~dgw~~TGDlg~~-~~G~l~~~GR~dd~i~~~G~~v~p~eIE~~l  480 (579)
T PRK09192        408 ERVVGHICVRGPSLMSGYFRD-EESQDVLAADGWLDTGDLGYL-LDGYLYITGRAKDLIIINGRNIWPQDIEWIA  480 (579)
T ss_pred             CCCEEEEEecCCchhhhhcCC-ccccccccCCceeeccceeeE-ECCEEEEEeccccEEEECCCccCHHHHHHHH
Confidence            999999999999999999998 4444444 5799999999999 9999999999999999999999999999763

>PRK08162 acyl-CoA synthetase; Validated

Probab=100.00  E-value=7.2e-55  Score=427.78  Aligned_cols=419  Identities=23%  Similarity=0.320  Sum_probs=327.4

Q ss_pred             cccHHHHHHHHHHhcCCcceEEecCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcEE
Q 014065            3 GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATA   82 (431)
Q Consensus         3 ~~tl~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~   82 (431)
                      .++..+.|++.++.+|+++|+...+ .++||+||.++++++|.+|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus        17 ~~~~~~~~~~~~~~~~~~~a~~~~~-~~~ty~~L~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~G~~~   95 (545)
T PRK08162         17 PLTPLSFLERAAEVYPDRPAVIHGD-RRRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGVPMAGAVL   95 (545)
T ss_pred             cCCHHHHHHHHHHHCCCCeEEEECC-eEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHhCcEE
Confidence            3578899999999999999998755 699999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCcccccccccccch---------hhhhhhcccccccccc
Q 014065           83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADS---------ELTLSLAHSESDTNAI  153 (431)
Q Consensus        83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~  153 (431)
                      +|+++..+.+++.++++.++++.++++.+..+...+........... .+.....         ...+............
T Consensus        96 vpl~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (545)
T PRK08162         96 NTLNTRLDAASIAFMLRHGEAKVLIVDTEFAEVAREALALLPGPKPL-VIDVDDPEYPGGRFIGALDYEAFLASGDPDFA  174 (545)
T ss_pred             eccccccChHHHHHHHHhCCCeEEEEccchhhHHHHHHhhCCCCceE-EEecCccccccCCCcccccHHHHhccCCcccc
Confidence            99999999999999999999999999988766655443322211111 1110000         0000000000001111


Q ss_pred             ccCCCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEe
Q 014065          154 SKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTL  233 (431)
Q Consensus       154 ~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~  233 (431)
                      .......++.++++|||||||.||+|.++|.++............+..+++.++.+|++|.+++...++..+..| +.++
T Consensus       175 ~~~~~~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~~~~~~~~~~~~~g-~~~~  253 (545)
T PRK08162        175 WTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAWGMPKHPVYLWTLPMFHCNGWCFPWTVAARAG-TNVC  253 (545)
T ss_pred             ccCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeeEeccCcHhhhhHHHHHHHHHHcc-EEEE
Confidence            111233457899999999999999999999988766665556667888899999999999998876555555544 4444


Q ss_pred             CCCCCCChhhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHhCCceecccCc
Q 014065          234 PAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAM  313 (431)
Q Consensus       234 ~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~i~~~yg~  313 (431)
                      ..  .+++..+++.++++++|++.++|++++.+++..... ...+.+.+.++++|+.++++..+.+.+ +++++++.||+
T Consensus       254 ~~--~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~YG~  329 (545)
T PRK08162        254 LR--KVDPKLIFDLIREHGVTHYCGAPIVLSALINAPAEW-RAGIDHPVHAMVAGAAPPAAVIAKMEE-IGFDLTHVYGL  329 (545)
T ss_pred             eC--CCCHHHHHHHHHHcCCeEEEechHHHHHHHhCcccc-ccCCccceEEEECCCCCCHHHHHHHHH-hCCceeecccc
Confidence            44  579999999999999999999999999998765432 222456667789999999999998876 48999999999


Q ss_pred             ccccCcccCCCCCCCC--------CCCCCCccccc--cceEEEECC-CCCcCCC-C-ceeeEEEeCCccccccccCcchh
Q 014065          314 TEATHLMSSNPLPEDG--------PHKPGSVGRPV--GQEIAILDE-IGVPQEG-G-AKGEVCIRGPNVTKGYKNNPEAN  380 (431)
Q Consensus       314 tE~~~~~~~~~~~~~~--------~~~~~~~G~~~--~~~~~i~d~-~~~~~~~-~-~~Gel~v~~~~~~~gy~~~~~~~  380 (431)
                      ||+++.+..+......        .....+.|.+.  +..++++|+ ++.+++. | +.|||+++|+.++.||+++++.+
T Consensus       330 tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~g~~~Gel~v~g~~~~~gY~~~~~~~  409 (545)
T PRK08162        330 TETYGPATVCAWQPEWDALPLDERAQLKARQGVRYPLQEGVTVLDPDTMQPVPADGETIGEIMFRGNIVMKGYLKNPKAT  409 (545)
T ss_pred             cccCcceeecccccccccCCccchhhccCCCCcccCCcceEEEEcCCCCcccCCCCCceeEEEEecCcchhhhcCChhhh
Confidence            9986544433211100        11234556654  356888894 6788865 3 46999999999999999999999


Q ss_pred             hhcccCCceecCceEEEcCCCeEEEecccccceecCCeeccccceecc
Q 014065          381 KSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLA  428 (431)
Q Consensus       381 ~~~~~~g~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a  428 (431)
                      ...|.+|||+|||++++|+||+++++||.+|++|.+|++++|.|||.+
T Consensus       410 ~~~~~~g~~~TGDl~~~d~dg~l~~~GR~~~~i~~~G~~v~~~eIE~~  457 (545)
T PRK08162        410 EEAFAGGWFHTGDLAVLHPDGYIKIKDRSKDIIISGGENISSIEVEDV  457 (545)
T ss_pred             HHHhhCCCcccCceEEEcCCccEEEEecccceEEeCCEEECHHHHHHH
Confidence            999999999999999999999999999999999999999999999975

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

Probab=100.00  E-value=5.2e-55  Score=425.23  Aligned_cols=406  Identities=23%  Similarity=0.321  Sum_probs=338.8

Q ss_pred             ccHHHHHHHHHHhcCCcceEEecCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcEEE
Q 014065            4 VTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAA   83 (431)
Q Consensus         4 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v   83 (431)
                      +++.++|++.|+.+|+++++...+ +++||+||.++++++|.+|.+.|+.+|++|+++++|+.+++++++||+++|++++
T Consensus         2 ~~~~~~l~~~a~~~p~~~~~~~~~-~~~t~~~l~~~~~~~a~~l~~~g~~~~~~v~~~~~~~~~~~~~~~a~~~~G~~~~   80 (503)
T PRK04813          2 MDIIETIEEFAQTQPDFPAYDYLG-EKLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLGAVKAGHAYI   80 (503)
T ss_pred             chHHHHHHHHHHhCCCceEEEeCC-cEEeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEe
Confidence            468899999999999999998654 6999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCcccccccccccchhhhhhhccccccccccccCCCCCCCe
Q 014065           84 PLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDV  163 (431)
Q Consensus        84 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (431)
                      |+++..+.+++.++++..++++++++.+.....      ...  ..+...      .+..... ............++++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~------~~~~~~~-~~~~~~~~~~~~~~~~  145 (503)
T PRK04813         81 PVDVSSPAERIEMIIEVAKPSLIIATEELPLEI------LGI--PVITLD------ELKDIFA-TGNPYDFDHAVKGDDN  145 (503)
T ss_pred             cCCCCChHHHHHHHHHhcCCCEEEecccccccc------cCC--cEEehH------Hhhhhhh-ccccccccccCCCCCc
Confidence            999999999999999999999999987641100      000  000000      0000000 0011111233467889


Q ss_pred             EEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCCCC-CCChh
Q 014065          164 ALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAG-RFSAS  242 (431)
Q Consensus       164 ~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~-~~~~~  242 (431)
                      ++++|||||||.||+|.++|.++..........+++..+++++...|++|..++.. ++.++..|+++++.+.. ..++.
T Consensus       146 ~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~l~~g~~~v~~~~~~~~~~~  224 (503)
T PRK04813        146 YYIIFTSGTTGKPKGVQISHDNLVSFTNWMLEDFALPEGPQFLNQAPYSFDLSVMD-LYPTLASGGTLVALPKDMTANFK  224 (503)
T ss_pred             EEEEECCCCCCCCcEEEeehHHHHHHHHHHHHHcCCCcCceeeecCCcchhHhHHH-HHHHHhcCCEEEEcChhhhcCHH
Confidence            99999999999999999999999988887778888999999999999999988766 78899999999987742 24789


Q ss_pred             hHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHh-CCceecccCcccccCccc
Q 014065          243 TFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVLEAYAMTEATHLMS  321 (431)
Q Consensus       243 ~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~-~~~i~~~yg~tE~~~~~~  321 (431)
                      .+++.+++++++.+..+|++++.+...... ....++++|.++++|+++++.+.+++.+.+ ++.+++.||+||++..++
T Consensus       225 ~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~-~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~  303 (503)
T PRK04813        225 QLFETLPQLPINVWVSTPSFADMCLLDPSF-NEEHLPNLTHFLFCGEELPHKTAKKLLERFPSATIYNTYGPTEATVAVT  303 (503)
T ss_pred             HHHHHHHHcCCeEEEeChHHHHHHHHhhcc-CcccCCCceEEEEecCcCCHHHHHHHHHHCCCceEEeCcccchheeEEE
Confidence            999999999999999999999887655432 234578999999999999999999999998 788999999999976554


Q ss_pred             CCCCCC--CCCCCCCCccccc-cceEEEECCCCCcCCCCceeeEEEeCCccccccccCcchhhhccc--C--CceecCce
Q 014065          322 SNPLPE--DGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFL--F--GWFHTGDI  394 (431)
Q Consensus       322 ~~~~~~--~~~~~~~~~G~~~-~~~~~i~d~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~--~--g~~~TGD~  394 (431)
                      ......  .......++|+|. +.+++|+|++|.+++.|+.|||+++++.++.||+++++.+...|.  +  +||+|||+
T Consensus       304 ~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~g~~~~~tGD~  383 (503)
T PRK04813        304 SIEITDEMLDQYKRLPIGYAKPDSPLLIIDEEGTKLPDGEQGEIVISGPSVSKGYLNNPEKTAEAFFTFDGQPAYHTGDA  383 (503)
T ss_pred             EEEecccccccCCCCcccccCCCCEEEEECCCCCCCCCCCceEEEEeccccccccCCChhHhHHhhccCCCceeEECCce
Confidence            332211  1234456799998 899999999999999999999999999999999999988887763  3  49999999


Q ss_pred             EEEcCCCeEEEecccccceecCCeeccccceecc
Q 014065          395 GYFDSDGYLHLVGRIKELINRGGNLHESISLFLA  428 (431)
Q Consensus       395 ~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a  428 (431)
                      +++ ++|++++.||.+|+|+.+|++++|.+||.+
T Consensus       384 ~~~-~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~  416 (503)
T PRK04813        384 GYL-EDGLLFYQGRIDFQIKLNGYRIELEEIEQN  416 (503)
T ss_pred             EEe-eCCeEEEeccccceEEECcEEeCHHHHHHH
Confidence            999 999999999999999999999999999975

>TIGR01733 AA-adenyl-dom amino acid adenylation domain

Probab=100.00  E-value=1.7e-55  Score=417.37  Aligned_cols=382  Identities=26%  Similarity=0.409  Sum_probs=319.8

Q ss_pred             cHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCcHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHhcCCceEEEecC
Q 014065           32 TYSRIHELVERAASRLVA-AGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPA  110 (431)
Q Consensus        32 Ty~el~~~~~~~a~~L~~-~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~  110 (431)
                      ||.||.++++++|+.|.+ .|+++||+|+++++|+++++++++||+++|++++|+++.++.+++.++++.++++.++++.
T Consensus         1 t~~~l~~~~~~~a~~l~~~~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~~   80 (408)
T TIGR01733         1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDS   80 (408)
T ss_pred             CHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence            899999999999999998 8999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CchhHHHHHHHhcCcccccccccccchhhhhhhccccccccccccCCCCCCCeEEEEeccCCCCCCCeeeechHHHHHHH
Q 014065          111 EGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASV  190 (431)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~  190 (431)
                      +..........      ..... .....   .... ..............+++++++|||||||.||+|.++|.++...+
T Consensus        81 ~~~~~~~~~~~------~~~~~-~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~i~~TSGTtG~pK~v~~s~~~~~~~~  149 (408)
T TIGR01733        81 ALASRLAGLVL------PIILV-DPLEL---AALD-DAPAPPPPDAPSGPDDLAYVIYTSGSTGRPKGVVVTHRSLVNLL  149 (408)
T ss_pred             chhhhccccCC------ceEEe-chhhh---hhcc-cccccccccCCCCCCCcEEEEEcCCCCCCCCEEEeccHHHHHHH
Confidence            75443322110      00000 00000   0000 00011111111457899999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCCCCCC-ChhhHHHHHHHhcceeeecchHHHHHHHhc
Q 014065          191 SNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRF-SASTFWQDMIKYNATWYTAVPTIHQIVLDR  269 (431)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~  269 (431)
                      ..+...+++.+++++++..|++|.+++.. ++.++..|+++++.+.... .+..+.+.+++++++.+.++|.+++.+.+.
T Consensus       150 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~~p~~~~~l~~~  228 (408)
T TIGR01733       150 AWLARRYGLDPDDRVLQFASLSFDASVEE-IFGTLLAGATLVVPPEDEERDAALLAALIAEHPVTVLNLTPSLLALLAAA  228 (408)
T ss_pred             HHHHHhcCCCCCceEEEecCCccchhHHH-HHHHHhCCCEEEEcChhhccCHHHHHHHHHHcCceEEEeCHHHHHHHHHh
Confidence            98888889999999999999999998765 8999999999998774222 367889999999999999999999999887


Q ss_pred             ccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHhC-CceecccCcccccCcccCCCCCCCCCC--CCCCccccc-cceEE
Q 014065          270 HVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFG-APVLEAYAMTEATHLMSSNPLPEDGPH--KPGSVGRPV-GQEIA  345 (431)
Q Consensus       270 ~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~-~~i~~~yg~tE~~~~~~~~~~~~~~~~--~~~~~G~~~-~~~~~  345 (431)
                      ..    ..++++|.++.+|+++++++++.+.+.++ +.+++.||+||+++++...........  .+.++|.|+ +++++
T Consensus       229 ~~----~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~  304 (408)
T TIGR01733       229 LP----PALASLRLVILGGEALTPALVDRWRARGPGARLINLYGPTETTVWSTATLVDADDAPRESPVPIGRPLANTRLY  304 (408)
T ss_pred             hh----hcccCceEEEEeCccCCHHHHHHHHHhCCCcEEEecccCCceEEEEEEEEcCccccCCccccccCcccCCceEE
Confidence            54    34789999999999999999999999997 899999999999987753332222222  278899999 89999


Q ss_pred             EECCCCCcCCCCceeeEEEeCCccccccccCcchhhhcccC-------C--ceecCceEEEcCCCeEEEecccccceecC
Q 014065          346 ILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF-------G--WFHTGDIGYFDSDGYLHLVGRIKELINRG  416 (431)
Q Consensus       346 i~d~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~-------g--~~~TGD~~~~~~~g~l~~~gR~~d~i~~~  416 (431)
                      |+|+++++++.|+.|||++++++++.||+++++.+.+.|..       |  ||+|||++++|++|++++.||.+|+|+.+
T Consensus       305 i~~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~~g~~~~~gR~~~~i~~~  384 (408)
T TIGR01733       305 VLDDDLRPVPVGVVGELYIGGPGVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNLEFLGRIDDQVKIR  384 (408)
T ss_pred             EECCCCCCCCCCCceEEEecCccccccccCChhhhhcceeeCCCCCCCCceEEECCceEEEcCCCCEEEeeccCCEEEeC
Confidence            99988999999999999999999999999998888777643       2  99999999999999999999999999999


Q ss_pred             Ceeccccceeccc
Q 014065          417 GNLHESISLFLAK  429 (431)
Q Consensus       417 G~~i~~~~iE~a~  429 (431)
                      |++++|.|||.+.
T Consensus       385 G~~v~~~~ie~~l  397 (408)
T TIGR01733       385 GYRIELGEIEAAL  397 (408)
T ss_pred             eEEechHHHHHHH
Confidence            9999999999763

This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.

>PRK07798 acyl-CoA synthetase; Validated

Probab=100.00  E-value=8.7e-55  Score=426.78  Aligned_cols=416  Identities=25%  Similarity=0.313  Sum_probs=326.2

Q ss_pred             cccHHHHHHHHHHhcCCcceEEecCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcEE
Q 014065            3 GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATA   82 (431)
Q Consensus         3 ~~tl~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~   82 (431)
                      ..||.+++++.|+++|+++|+.+.+ +.+||.||.++++++|++|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus         2 ~~~l~~~~~~~a~~~p~~~a~~~~~-~~~ty~el~~~~~~la~~L~~~g~~~~~~v~v~~~n~~~~~~~~~a~~~~G~~~   80 (533)
T PRK07798          2 AWNIADLFEAVADAVPDRVALVCGD-RRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKARAVP   80 (533)
T ss_pred             cccHHHHHHHHHHhCCCceEEEECC-ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCeEE
Confidence            4689999999999999999998754 799999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCcccccccccccch------hhhhhhccccccccccccC
Q 014065           83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADS------ELTLSLAHSESDTNAISKL  156 (431)
Q Consensus        83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~  156 (431)
                      +|+++.++.+++.++++.++++.++++........+...........+.+.+...      ...+........ . ....
T Consensus        81 v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~  158 (533)
T PRK07798         81 VNVNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVLPRLPKLRTLVVVEDGSGNDLLPGAVDYEDALAAGS-P-ERDF  158 (533)
T ss_pred             EecCcCCCHHHHHHHHhhcCCCEEEEchhhHHHHHHHhccCCCccEEEEecCCcccccCCccccHHHHHhccC-C-cCCC
Confidence            9999999999999999999999999998766555544322111111111111110      001111000000 0 1111


Q ss_pred             CCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHH---------hcC------CCCCeEEEecChhhHHHHHHHH
Q 014065          157 TNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSV---------YKL------TESDSTVIVLPLFHVHGMLAGL  221 (431)
Q Consensus       157 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---------~~~------~~~~~~~~~~p~~~~~~~~~~~  221 (431)
                      .....+.++++|||||||.||+|+++|.++..........         ..+      ..+++++..+|++|..+++. +
T Consensus       159 ~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~-~  237 (533)
T PRK07798        159 GERSPDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPAPPLMHGAGQWA-A  237 (533)
T ss_pred             CCCCCCceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccCCCCceEEEecchhhhhhHHH-H
Confidence            1223345789999999999999999999987654432221         111      56788999999999999985 8


Q ss_pred             HHHHhcCCEEEeCCCCCCChhhHHHHHHHhcceeeecchHHHHH-HHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHH
Q 014065          222 LSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQI-VLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLE  300 (431)
Q Consensus       222 ~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~-l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~  300 (431)
                      +.+++.|+++++.+...+++..+++.++++++|.+.++|..+.. +.+........+++++|.+++||+++++++.+++.
T Consensus       238 ~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~  317 (533)
T PRK07798        238 FAALFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPLLDALEARGPYDLSSLFAIASGGALFSPSVKEALL  317 (533)
T ss_pred             HHHHhcCceEEEecCCCcCHHHHHHHHHHhCCeEEEechHHHHHHHHHHhcccccCCCCceEEEEECCCCCCHHHHHHHH
Confidence            89999999999987546789999999999999999999876543 33333212234578999999999999999999999


Q ss_pred             HHh-CCceecccCcccccCcccCCCCCCCCCCCCCCcc--ccc-cceEEEECCCCCcCCCCce--eeEEEeCCccccccc
Q 014065          301 EAF-GAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVG--RPV-GQEIAILDEIGVPQEGGAK--GEVCIRGPNVTKGYK  374 (431)
Q Consensus       301 ~~~-~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~~~G--~~~-~~~~~i~d~~~~~~~~~~~--Gel~v~~~~~~~gy~  374 (431)
                      +.+ +..+++.||+||++.+......     ......|  ++. +..++++|+++++++.|+.  |+++ .++.+..||+
T Consensus       318 ~~~~~~~~~~~YG~tE~~~~~~~~~~-----~~~~~~g~~~~~~~~~~~i~~~~~~~~~~g~~~~g~l~-~~~~~~~gy~  391 (533)
T PRK07798        318 ELLPNVVLTDSIGSSETGFGGSGTVA-----KGAVHTGGPRFTIGPRTVVLDEDGNPVEPGSGEIGWIA-RRGHIPLGYY  391 (533)
T ss_pred             HHcCCCeEEeeecccccccccccCCC-----CCCccCCCCccCCCceEEEECCCCCCCCCCCCCeeEEE-eecCcccccc
Confidence            988 7899999999999765544321     1112233  555 7899999999999998887  6665 5567899999


Q ss_pred             cCcchhhhcccC----CceecCceEEEcCCCeEEEecccccceecCCeeccccceecc
Q 014065          375 NNPEANKSAFLF----GWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLA  428 (431)
Q Consensus       375 ~~~~~~~~~~~~----g~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a  428 (431)
                      +++..+++.|..    +||+|||++++|++|++++.||.+|+||.+|++|+|.|||.+
T Consensus       392 ~~~~~t~~~f~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~~~i~~~G~~v~~~eIE~~  449 (533)
T PRK07798        392 KDPEKTAETFPTIDGVRYAIPGDRARVEADGTITLLGRGSVCINTGGEKVFPEEVEEA  449 (533)
T ss_pred             CChhhhHHhhccCCCCceEEcCcEEEEcCCCcEEEEccccceEecCCEEeCHHHHHHH
Confidence            999888887742    599999999999999999999999999999999999999976

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=9.6e-55  Score=426.71  Aligned_cols=410  Identities=25%  Similarity=0.292  Sum_probs=328.4

Q ss_pred             cHHHHHHHHHHhcCCcceEEecC-CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcEEE
Q 014065            5 TLIGLLNQVIDQFSSKRALSVSG-KFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAA   83 (431)
Q Consensus         5 tl~~~l~~~a~~~p~~~a~~~~~-~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v   83 (431)
                      ++.+.|...|..+|+.+++...+ ++.+||.||+++++++|++|.+.|+++||+|+++++|+++++++++||+++|++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ty~el~~~v~~~a~~L~~~g~~~gd~V~l~~~~~~~~~~~~la~~~~g~v~~   82 (545)
T PRK07768          3 RFTEKMYANARTSPRGMVTGEPDAPVRHTWGEVHERARRIAGGLAAAGVGPGDAVAVLAGAPVEIAPTAQGLWMRGASLT   82 (545)
T ss_pred             hHHHHHHHHhhCCCcceEEecCCCceEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHcCcccc
Confidence            47888889999999999997654 36899999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCHHH-------HHHHHhcCCceEEEecCCchhHHHHHHHhcCcccccccccccchhhhhhhccccccccccccC
Q 014065           84 PLNAAYTPDE-------FEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKL  156 (431)
Q Consensus        84 ~l~~~~~~~~-------l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (431)
                      ++++..+.++       +.++++.++++.+++++.......... ....  ....+.+      +..   ..   .....
T Consensus        83 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~--~~~~~~~------l~~---~~---~~~~~  147 (545)
T PRK07768         83 MLHQPTPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLAAAPVLE-EKGI--RVLTVAD------LLA---AD---PIDPV  147 (545)
T ss_pred             ccCCCCCcchhHHHHHHHHHHHHhCCCCEEEecchhhhhhhhhc-ccCC--ceeehhh------hcc---cC---CCCcC
Confidence            9998877544       455678899999999876443322211 1010  0000000      000   00   01122


Q ss_pred             CCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCC-CeEEEecChhhHHHHHHHHHHHHhcCCEEEeCC
Q 014065          157 TNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTES-DSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPA  235 (431)
Q Consensus       157 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~  235 (431)
                      ...++++++++|||||||.||+|.++|.++...+.......++.++ +++++.+|++|..++...+..++..|+++++.+
T Consensus       148 ~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~v~~~  227 (545)
T PRK07768        148 ETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAAEFDVETDVMVSWLPLFHDMGMVGFLTVPMYFGAELVKVT  227 (545)
T ss_pred             CCCCCCEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHHhcCCCCCCceeEEeCCCccchHHHHHHHHHHHCCceEEEeC
Confidence            4457899999999999999999999999999888887777888876 899999999999999887888899999998765


Q ss_pred             CCC--CChhhHHHHHHHhcceeeecchHHHHHHHhcccC---CCCCCCCCccEEEeccCCCcHHHHHHHHHH---hCC--
Q 014065          236 AGR--FSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVA---KPEPVYPKLRFIRSCSASLAPVILSRLEEA---FGA--  305 (431)
Q Consensus       236 ~~~--~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~---~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~---~~~--  305 (431)
                      +..  .++..+++.+++++++++...|..+..+.+....   ....+++++|.++.+|++++++..+.+.+.   ++.  
T Consensus       228 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~g~~~  307 (545)
T PRK07768        228 PMDFLRDPLLWAELISKYRGTMTAAPNFAYALLARRLRRQAKPGAFDLSSLRFALNGAEPIDPADVEDLLDAGARFGLRP  307 (545)
T ss_pred             HHHHHHhHHHHHHHHHHhCCEEEECchHHHHHHHHHHhccccccCCCchheeeEEeccCCCCHHHHHHHHHHHHhcCCCc
Confidence            322  2677889999999999998888877766554321   113457899999999999999999999875   454  


Q ss_pred             -ceecccCcccccCcccCCCCCC-----------------------CCCCCCCCccccc-cceEEEECCCCCcCCCCcee
Q 014065          306 -PVLEAYAMTEATHLMSSNPLPE-----------------------DGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKG  360 (431)
Q Consensus       306 -~i~~~yg~tE~~~~~~~~~~~~-----------------------~~~~~~~~~G~~~-~~~~~i~d~~~~~~~~~~~G  360 (431)
                       .+++.||+||++..+.......                       ......+++|+|+ +.+++++|+++++++.++.|
T Consensus       308 ~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~g~~G  387 (545)
T PRK07768        308 EAILPAYGMAEATLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVVDEDGQVLPPRGVG  387 (545)
T ss_pred             ccccccccccccceEEEccCCCCCcceeeechhHhhccCceeccCCCCcceEEeccCCCCCCEEEEECCCCCCCCCCCEE
Confidence             4999999999987654332110                       0022346899999 89999999999999999999


Q ss_pred             eEEEeCCccccccccCcchhhhcccCCceecCceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          361 EVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       361 el~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      ||+++|+.++.||++.+........+|||+|||+++++++|+++++||.+|+||++|++|+|.|||.+.
T Consensus       388 el~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eiE~~l  456 (545)
T PRK07768        388 VIELRGESVTPGYLTMDGFIPAQDADGWLDTGDLGYLTEEGEVVVCGRVKDVIIMAGRNIYPTDIERAA  456 (545)
T ss_pred             EEEEccCcccccccCCCCCcccccCCCeeeccceEEEecCCEEEEEccccceEEECCEecCHHHHHHHH
Confidence            999999999999998665554445678999999999999999999999999999999999999999863

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=2.8e-54  Score=420.11  Aligned_cols=394  Identities=25%  Similarity=0.337  Sum_probs=320.4

Q ss_pred             eEEecCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHhcC
Q 014065           22 ALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDS  101 (431)
Q Consensus        22 a~~~~~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~  101 (431)
                      |++. +++.+||.||.++++++|++|.+.|+++||+|+++++|+++++++++||+++|++++++++..+.+++.++++.+
T Consensus         4 ~~~~-~~~~~Ty~el~~~~~~la~~l~~~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~   82 (509)
T PRK12406          4 TIIS-GDRRRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYILEDS   82 (509)
T ss_pred             EEEE-CCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHHHHHHHhcc
Confidence            4554 457999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceEEEecCCchhHHHHHHHhcCcccccccccccc-----------------hhhhhhhccccccccccccCCCCCCCeE
Q 014065          102 ESKLLLTPAEGNAAAQAAASKLNISHATATLLDAD-----------------SELTLSLAHSESDTNAISKLTNDPSDVA  164 (431)
Q Consensus       102 ~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (431)
                      ++++++++......+.......   ...+......                 ....+....    ...........++++
T Consensus        83 ~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~a  155 (509)
T PRK12406         83 GARVLIAHADLLHGLASALPAG---VTVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWL----AQQEPYDGPPVPQPQ  155 (509)
T ss_pred             CCcEEEEccchhhhhhhhhhcc---cceeecccccccccccccccccccCCCCccCHHHHh----cccCccCCCCCCCce
Confidence            9999999877555433222110   0000000000                 000000000    000111233568999


Q ss_pred             EEEeccCCCCCCCeeeechHHH---HHHHHHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCCCCCCCh
Q 014065          165 LFLHTSGTTSRPKGVPLTQNNL---AASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSA  241 (431)
Q Consensus       165 ~i~~TSGtTG~pK~v~~s~~~l---~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~  241 (431)
                      +++|||||||.||+|.++|...   ..........+++.++++++..+|++|..+... .+.++..|+++++.+  .+++
T Consensus       156 ~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~~~~g~~~~~~~--~~~~  232 (509)
T PRK12406        156 SMIYTSGTTGHPKGVRRAAPTPEQAAAAEQMRALIYGLKPGIRALLTGPLYHSAPNAY-GLRAGRLGGVLVLQP--RFDP  232 (509)
T ss_pred             EEEECCCCCCCCceEEEechhHHHHHHHHHhhhhhcCCCCCceEEEEeCCcccchHHH-HHHHHhhheEEEEcc--CCCH
Confidence            9999999999999999876553   333444556778899999999999999988766 445678899998876  6789


Q ss_pred             hhHHHHHHHhcceeeecchHHHHHHHhcccC-CCCCCCCCccEEEeccCCCcHHHHHHHHHHhCCceecccCcccccCcc
Q 014065          242 STFWQDMIKYNATWYTAVPTIHQIVLDRHVA-KPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLM  320 (431)
Q Consensus       242 ~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~-~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~  320 (431)
                      ..+++.++++++|.+.++|+++..+++.... ....+++++|.++.||+++++++.+++.+.+++.+++.||+||++.++
T Consensus       233 ~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~v~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~  312 (509)
T PRK12406        233 EELLQLIERHRITHMHMVPTMFIRLLKLPEEVRAKYDVSSLRHVIHAAAPCPADVKRAMIEWWGPVIYEYYGSTESGAVT  312 (509)
T ss_pred             HHHHHHHHHcCCeEEEccHHHHHHHHhCchhhcccCCCCceeEEEEcCCCCCHHHHHHHHHHcCCcEEeeccccccCceE
Confidence            9999999999999999999999999875432 123457899999999999999999999998999999999999999866


Q ss_pred             cCCCCCCCCCCCCCCccccc-cceEEEECCCCCcCCCCceeeEEEeCCcccc-ccccCcchhhhcccCCceecCceEEEc
Q 014065          321 SSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTK-GYKNNPEANKSAFLFGWFHTGDIGYFD  398 (431)
Q Consensus       321 ~~~~~~~~~~~~~~~~G~~~-~~~~~i~d~~~~~~~~~~~Gel~v~~~~~~~-gy~~~~~~~~~~~~~g~~~TGD~~~~~  398 (431)
                      ....  .+....++++|+|+ +.+++++|+++++++.|+.|||+++++.++. ||+++++.+...+.++||+|||++++|
T Consensus       313 ~~~~--~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~~~y~~~~~~~~~~~~~~~~~TGD~~~~~  390 (509)
T PRK12406        313 FATS--EDALSHPGTVGKAAPGAELRFVDEDGRPLPQGEIGEIYSRIAGNPDFTYHNKPEKRAEIDRGGFITSGDVGYLD  390 (509)
T ss_pred             ecCc--ccccccCCCcCccCCCcEEEEECCCCCCCCCCCceEEEEECCccccccccCCchhcccccCCCCeEEccEEEEc
Confidence            5443  22345567899999 8999999999999999999999999998875 899988888877788999999999999


Q ss_pred             CCCeEEEecccccceecCCeeccccceecc
Q 014065          399 SDGYLHLVGRIKELINRGGNLHESISLFLA  428 (431)
Q Consensus       399 ~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a  428 (431)
                      ++|++++.||.+|+||++|.+|+|.+||.+
T Consensus       391 ~~g~~~~~GR~~d~ik~~G~~v~~~~IE~~  420 (509)
T PRK12406        391 ADGYLFLCDRKRDMVISGGVNIYPAEIEAV  420 (509)
T ss_pred             CCceEEEeecccceEEECCEEECHHHHHHH
Confidence            999999999999999999999999999986

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.5e-54  Score=419.83  Aligned_cols=395  Identities=26%  Similarity=0.302  Sum_probs=319.9

Q ss_pred             cCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHhcCCceE
Q 014065           26 SGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKL  105 (431)
Q Consensus        26 ~~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~  105 (431)
                      .+++++||.||.++++++|++|.+.|+++||+|+++++|+++++++++||+++|++++|+++.++.+++.++++.++++.
T Consensus         7 ~~~~~~ty~el~~~v~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~   86 (502)
T PRK08276          7 PSGEVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDDSGAKV   86 (502)
T ss_pred             CCCcEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHhcCCCCE
Confidence            44589999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCchhHHHHHHHhcCcccccccccccc--hhhhhhhccccccccccccCCCCCCCeEEEEeccCCCCCCCeeeech
Q 014065          106 LLTPAEGNAAAQAAASKLNISHATATLLDAD--SELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQ  183 (431)
Q Consensus       106 ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~  183 (431)
                      +++++.......+..+........+...+..  ....+.......    ........++.++++|||||||.||+|.++|
T Consensus        87 ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~a~i~~TSGtTG~PK~v~~~~  162 (502)
T PRK08276         87 LIVSAALADTAAELAAELPAGVPLLLVVAGPVPGFRSYEEALAAQ----PDTPIADETAGADMLYSSGTTGRPKGIKRPL  162 (502)
T ss_pred             EEEccchhhHHHHHhhhccccccEEEEeCCCCCccccHHHHHhcC----CCCCCCCCCcceEEEECCCCCCCCceEEEcc
Confidence            9999876665554433322111111111100  000111100000    1111234567899999999999999999988


Q ss_pred             HHHHHHH------HHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCCCCCCChhhHHHHHHHhcceeee
Q 014065          184 NNLAASV------SNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYT  257 (431)
Q Consensus       184 ~~l~~~~------~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~  257 (431)
                      .++....      ...........++++++.+|++|..++.. .+.++..|+++++.+  .+++..+++.++++++|++.
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~~~~g~~~~~~~--~~~~~~~~~~i~~~~~t~~~  239 (502)
T PRK08276        163 PGLDPDEAPGMMLALLGFGMYGGPDSVYLSPAPLYHTAPLRF-GMSALALGGTVVVME--KFDAEEALALIERYRVTHSQ  239 (502)
T ss_pred             CCcchhhhhHHhhhhhhhcccCCCCCEEEEcCcHHHHHHHHH-HHHHHhccceEEEcC--CCCHHHHHHHHHHhCCeEEE
Confidence            7654322      11122222346788999999999998877 557899999998877  67899999999999999999


Q ss_pred             cchHHHHHHHhcccCC-CCCCCCCccEEEeccCCCcHHHHHHHHHHhCCceecccCcccccCcccCCCCCCCCCCCCCCc
Q 014065          258 AVPTIHQIVLDRHVAK-PEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSV  336 (431)
Q Consensus       258 ~~p~~~~~l~~~~~~~-~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~~~  336 (431)
                      ++|+++..+++..... ...+++++|.++++|+++++++.+++.+.++..+++.||+||++.++.....  ......+++
T Consensus       240 ~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~g~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~--~~~~~~~~~  317 (502)
T PRK08276        240 LVPTMFVRMLKLPEEVRARYDVSSLRVAIHAAAPCPVEVKRAMIDWWGPIIHEYYASSEGGGVTVITSE--DWLAHPGSV  317 (502)
T ss_pred             ehHHHHHHHHhCccccCCCCCcccceEEEecCCCCCHHHHHHHHHHhCcHhhhhcccccccceeEecCc--cccccCCCc
Confidence            9999999998765432 2345789999999999999999999999889899999999999986655432  233456789


Q ss_pred             cccccceEEEECCCCCcCCCCceeeEEEeCCccccccccCcchhhhcccC-CceecCceEEEcCCCeEEEecccccceec
Q 014065          337 GRPVGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF-GWFHTGDIGYFDSDGYLHLVGRIKELINR  415 (431)
Q Consensus       337 G~~~~~~~~i~d~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~-g~~~TGD~~~~~~~g~l~~~gR~~d~i~~  415 (431)
                      |+|++..++++|+++.+++.|+.|||+++|+.++.||+++++.+...+.+ +||+|||+++++++|.+++.||.+|++|+
T Consensus       318 G~~~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~  397 (502)
T PRK08276        318 GKAVLGEVRILDEDGNELPPGEIGTVYFEMDGYPFEYHNDPEKTAAARNPHGWVTVGDVGYLDEDGYLYLTDRKSDMIIS  397 (502)
T ss_pred             ceecccEEEEECCCCCCCcCCCceEEEEECCCccchhcCCHHHHHHHhcCCCceeecceEEEcCCcCEEEeccCcceEEe
Confidence            99997799999988999999999999999999999999999988888865 99999999999999999999999999999


Q ss_pred             CCeeccccceeccc
Q 014065          416 GGNLHESISLFLAK  429 (431)
Q Consensus       416 ~G~~i~~~~iE~a~  429 (431)
                      +|.+|+|.+||.+-
T Consensus       398 ~G~~v~~~~iE~~i  411 (502)
T PRK08276        398 GGVNIYPQEIENLL  411 (502)
T ss_pred             CCEEeCHHHHHHHH
Confidence            99999999999863

>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=8.3e-55  Score=406.82  Aligned_cols=418  Identities=26%  Similarity=0.333  Sum_probs=341.5

Q ss_pred             HHHHHHh-cCCcceEEecC-----CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcEEE
Q 014065           10 LNQVIDQ-FSSKRALSVSG-----KFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAA   83 (431)
Q Consensus        10 l~~~a~~-~p~~~a~~~~~-----~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v   83 (431)
                      +++..+. .++.++.++.+     ...+||.|+.+++.++|..|...|+++||+|++++|+.++++++++||+++|++..
T Consensus        70 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~t~~el~~~v~~~a~~l~~~g~~kGD~V~~~mPm~~e~~ia~lA~~r~Gai~~  149 (626)
T KOG1175|consen   70 LDRHIKEKGGDKVAIIFEGNEGGDTEVWTYKELLDQVVRLANVLRKCGLKKGDTVAIYMPMIPEAVIAMLACARIGAIHS  149 (626)
T ss_pred             hhhhhhhcCCCCcEEEEEecCCCceEEEEHHHHHHHHHHHHHHHHhcCCCCCcEEEEeccCChHHHHHHHHHhhcCeEEE
Confidence            3344333 47888888752     24589999999999999999988999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHhcCCceEEEecCCchhH---------HHHHHHhcCcc----cccccccccchhhhhhhccccccc
Q 014065           84 PLNAAYTPDEFEFYLSDSESKLLLTPAEGNAA---------AQAAASKLNIS----HATATLLDADSELTLSLAHSESDT  150 (431)
Q Consensus        84 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~---------~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~  150 (431)
                      ++....+.+++...++.++++++++.+.....         ..+........    ...+.+....... +.........
T Consensus       150 ~v~~~fs~~~l~~Rl~~~~~k~i~t~d~~~~~~k~i~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~a~  228 (626)
T KOG1175|consen  150 SVFAGFSAKELLDRLQDSKAKVIITQDVVARGGKSINLKCIVLEALLLVSDKSRPVWLDLIVSRRNRDL-FWSLELKKAS  228 (626)
T ss_pred             EeeccCCHHHHHHHHHhcCCCEEEEEeeeccCCCccchhhhHHHHhhcccccccccceeeEEecccccc-cHHHHhhhcC
Confidence            99999999999999999999999998752211         11221111110    0000011111111 1111111122


Q ss_pred             cccccCCCCCCCeEEEEeccCCCCCCCeeeechHH-HHHHHHHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCC
Q 014065          151 NAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNN-LAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGA  229 (431)
Q Consensus       151 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~-l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~  229 (431)
                      ...+....+.+++.+|+|||||||.||++.+++.. ++..+......+++.+.|++++.....|+.+.+..++++|..|+
T Consensus       229 ~~~~~~~~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~~~~~~d~q~~dv~~~~~d~GWi~g~~~~~~gpl~~Ga  308 (626)
T KOG1175|consen  229 PEHPCVPVKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGAALTSRYHFDLQPSDVLWCASDLGWITGHSYVLYGPLLNGA  308 (626)
T ss_pred             CCCCceecCccCceEEEecCCCCCCCCceeeccCcchHHHhhhcceeccCCCcceEEEecccCeeeccchhhhhhhhcCc
Confidence            22235667789999999999999999999998876 55666677788899999999999999999999998999999999


Q ss_pred             EEEeCCCCCCChhhHHHHHHHhcceeeecchHHHHHHHhcccCCC-CCCCCCccEEEeccCCCcHHHHHHHHHHhCC-ce
Q 014065          230 AVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKP-EPVYPKLRFIRSCSASLAPVILSRLEEAFGA-PV  307 (431)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~-~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~-~i  307 (431)
                      ++++.+...+++..+++.+.++++|+++..|+.++.+.+...... ...+++||++.+.||++.++.+.++.+.++. +|
T Consensus       309 ~~vl~~g~p~~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~~~~~~~~~~~sLk~~~S~Gepi~~~~~ew~~~~~~~~pv  388 (626)
T KOG1175|consen  309 TVVLYEGPPFDPGRIWKILDKYKVTVLYTAPTAYRLLRRLGQEDVTSYSLKSLRTCGSVGEPINPEAWEWWKRVTGLDPI  388 (626)
T ss_pred             EEEEEcCCCCChhhhhhhHhhcceEEEEeccHHHHHHHHhccccccccccceEEEEeecCccCCcchHHHHHHhcCccch
Confidence            999988777799999999999999999999999998877655432 3334789999999999999999999999987 59


Q ss_pred             ecccCcccccCcccCCCCCCCCCCCCCCccccc-cceEEEECCCCCcCCCC-ceeeEEEeC--C-ccccccccCcchhhh
Q 014065          308 LEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGG-AKGEVCIRG--P-NVTKGYKNNPEANKS  382 (431)
Q Consensus       308 ~~~yg~tE~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d~~~~~~~~~-~~Gel~v~~--~-~~~~gy~~~~~~~~~  382 (431)
                      ++.||+||+|..+..+..... ...+++.+.|. |+++.|+|++|++++.+ +.|+|+++.  | +++++|+++++....
T Consensus       389 ~e~~~qtEtG~~~i~~~~g~~-p~~pg~~~~p~~g~~v~i~de~g~~~~~~~~~G~l~~~~~~P~~~~r~~~~n~erf~~  467 (626)
T KOG1175|consen  389 YETYGQTETGGICITPKPGKL-PIKPGSAGKPFPGYDVQILDENGNELPPSTGNGELRLKPPWPPGMFRTLWGNHERFRA  467 (626)
T ss_pred             hhceeeeccCceeeeccCCCC-CcCccccCCCCCCcceEEECCCCCCcCCCCceeEEEEeCCCCccccccccCCHHHhhh
Confidence            999999999999888776443 68899999999 99999999999999887 889999998  3 778999999985555


Q ss_pred             cc-c--CCceecCceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          383 AF-L--FGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       383 ~~-~--~g~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      .+ .  .|||.|||.+++|+||++|+.||.||+|+++|.++++.|||.|-
T Consensus       468 ~yf~k~pg~y~tGD~~~rd~dGY~~i~GR~DDviNvsGhRigtaEIE~al  517 (626)
T KOG1175|consen  468 AYFKKFPGYYFTGDGGRRDEDGYYWILGRVDDVINVSGHRIGTAEIESAL  517 (626)
T ss_pred             hhcccCCceEEecCceEEcCCceEEEEecccccccccceeecHHHHHHHH
Confidence            43 3  59999999999999999999999999999999999999999884

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=7.4e-54  Score=411.45  Aligned_cols=369  Identities=24%  Similarity=0.318  Sum_probs=310.2

Q ss_pred             cHHHHH-HHHHHhcCCcceEEecCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcEEE
Q 014065            5 TLIGLL-NQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAA   83 (431)
Q Consensus         5 tl~~~l-~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v   83 (431)
                      ++.+.+ ...++++|+++|+.+. ++++||.||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++|++++
T Consensus         3 ~~~~~~~~~~a~~~~~~~a~~~~-~~~~ty~el~~~~~~~a~~L~~~g~~~~~~v~l~~~~~~~~~~~~la~~~~G~~~v   81 (458)
T PRK09029          3 IFSDWPWRHWAQVRPQAIALRLN-DEVLTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLALLQCGARVL   81 (458)
T ss_pred             hhhcChHHHHHHhCCCceeeecC-CcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCEEe
Confidence            344444 4568999999999864 47999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCcccccccccccchhhhhhhccccccccccccCCCCCCCe
Q 014065           84 PLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDV  163 (431)
Q Consensus        84 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (431)
                      |+++..+.+++..+++.+++++++++.+.... ..      .....           ..  .    ..........++++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~------~~~~~-----------~~--~----~~~~~~~~~~~~~~  137 (458)
T PRK09029         82 PLNPQLPQPLLEELLPSLTLDFALVLEGENTF-SA------LTSLH-----------LQ--L----VEGAHAVAWQPQRL  137 (458)
T ss_pred             ecCCCCCHHHHHHHHHhcCCCEEEEcCcccch-hh------ccccc-----------cc--c----ccccCcccCCCCCe
Confidence            99999999999999999999999998764321 00      00000           00  0    00011223457889


Q ss_pred             EEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCCCCCCChhh
Q 014065          164 ALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSAST  243 (431)
Q Consensus       164 ~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~  243 (431)
                      ++++|||||||.||+|.++|.+++..+......++..++++++..+|++|.+++.. ++.++..|+++++.+.     ..
T Consensus       138 a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~-~~~~l~~G~~v~~~~~-----~~  211 (458)
T PRK09029        138 ATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLMPFTAQDSWLLSLPLFHVSGQGI-VWRWLYAGATLVVRDK-----QP  211 (458)
T ss_pred             EEEEECCCCCCCCCEEEEeHHHHHHHHHHHhhcCCCCccceEEEecCcHhhhhhHH-HHHHHhCCceEEeCCh-----HH
Confidence            99999999999999999999999999888888889999999999999999999865 7788999999998762     45


Q ss_pred             HHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHhCCceecccCcccccCcccCC
Q 014065          244 FWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSN  323 (431)
Q Consensus       244 ~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~  323 (431)
                      +++.+  .+++.+..+|+++..++.....     ..++|.+++||+++++.+.+.+.+ ++.++++.||+||++...+..
T Consensus       212 ~~~~i--~~~t~~~~~P~~~~~l~~~~~~-----~~~l~~i~~gG~~~~~~~~~~~~~-~g~~~~~~YG~tE~~~~~~~~  283 (458)
T PRK09029        212 LEQAL--AGCTHASLVPTQLWRLLDNRSE-----PLSLKAVLLGGAAIPVELTEQAEQ-QGIRCWCGYGLTEMASTVCAK  283 (458)
T ss_pred             HHHHH--hhceeeecChHHHHHHHhcccc-----CCcceEEEECCCCCCHHHHHHHHH-cCCcEeccccccccCcceecc
Confidence            66777  3789999999999998765432     347999999999999999999875 499999999999998765443


Q ss_pred             CCCCCCCCCCCCccccc-cceEEEECCCCCcCCCCceeeEEEeCCccccccccCcchhhhcccCCceecCceEEEcCCCe
Q 014065          324 PLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGY  402 (431)
Q Consensus       324 ~~~~~~~~~~~~~G~~~-~~~~~i~d~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~  402 (431)
                      ..     ....++|+|+ ++++++++           |||+++|+.++.||+++++.+.....+|||+|||+|++| ||+
T Consensus       284 ~~-----~~~~~~G~~~~~~~~~i~~-----------gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~TGD~~~~~-~g~  346 (458)
T PRK09029        284 RA-----DGLAGVGSPLPGREVKLVD-----------GEIWLRGASLALGYWRQGQLVPLVNDEGWFATRDRGEWQ-NGE  346 (458)
T ss_pred             CC-----CCCCCCCCCCCCCEEEEeC-----------CEEEEecCceeeeeecCccccccccCCCccCCCCcEEEe-CCE
Confidence            22     1235699999 79999987           899999999999999988877655567999999999999 999


Q ss_pred             EEEecccccceecCCeeccccceeccc
Q 014065          403 LHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       403 l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      +++.||++|+||++|.+|+|.|||.+.
T Consensus       347 l~~~gR~~d~i~~~G~~v~p~eiE~~l  373 (458)
T PRK09029        347 LTILGRLDNLFFSGGEGIQPEEIERVI  373 (458)
T ss_pred             EEEecccccceeeCCEEeCHHHHHHHH
Confidence            999999999999999999999999863

>PRK07868 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.3e-53  Score=439.36  Aligned_cols=402  Identities=19%  Similarity=0.233  Sum_probs=309.9

Q ss_pred             CcccHHHHHHHHHHhcCCcceEEecCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcE
Q 014065            2 EGVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARAT   81 (431)
Q Consensus         2 ~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~   81 (431)
                      ..+|+.++|++.++++|+++|+++.+ +++||+||.++++++|++|.+.|+++||+|+|+++|+++++++++||+++|++
T Consensus       445 ~~~sl~~ll~~~a~~~pd~~Al~~~~-~~lTY~eL~~ra~rlA~~L~~~Gv~~Gd~VaI~~~n~~e~v~a~lA~~~aGav  523 (994)
T PRK07868        445 TRISLGRIIAEQARDAPKGEFLLFDG-RVHTYEAVNRRINNVVRGLIAVGVRQGDRVGVLMETRPSALVAIAALSRLGAV  523 (994)
T ss_pred             CCccHHHHHHHHHHHCCCCeEEEeCC-ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCE
Confidence            45789999999999999999999755 69999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCcccccccccccc----------hhhhhhhccccc-c-
Q 014065           82 AAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDAD----------SELTLSLAHSES-D-  149 (431)
Q Consensus        82 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~-~-  149 (431)
                      ++|++|.   +++.++++.++++++|++++..+.....    .  ...+.+....          ....+....... . 
T Consensus       524 ~vpl~p~---~~l~~il~~s~~~~li~~~~~~~~~~~~----~--~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  594 (994)
T PRK07868        524 AVLMPPD---TDLAAAVRLGGVTEIITDPTNLEAARQL----P--GRVLVLGGGESRDLDLPDDADVIDMEKIDPDAVEL  594 (994)
T ss_pred             EEEeCCc---hhHHHHHhccCCeEEEEChHHHHHHHhc----C--ceEEEecCCccccccCCcchhhhhhhhcCcccccC
Confidence            9999985   6799999999999999987655433221    1  1111111100          000000000000 0 


Q ss_pred             ccccccCCCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCC
Q 014065          150 TNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGA  229 (431)
Q Consensus       150 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~  229 (431)
                      ..........++++++++|| ||||.||++.++|.++..........+++.++|++++.+|++|.+++...++.++..|+
T Consensus       595 ~~~~~~~~~~~dd~a~IiyT-gStgtpKpk~vt~~~~~~~~~~~~~~~~l~~~d~~L~~~Pl~h~~gl~~~l~~~l~gG~  673 (994)
T PRK07868        595 PGWYRPNPGLARDLAFIAFS-TAGGELVAKQITNYRWALSAFGTASAAALDRRDTVYCLTPLHHESGLLVSLGGAVVGGS  673 (994)
T ss_pred             CcccCCCCCCCCccEEEEEe-CCCCCcCcEEEehHHHHHHHHhhhhhcCCCCCCeEEEecChHHHhHHHHHHHHHhccce
Confidence            00000112235889999998 57777888778887766555555566788899999999999999999886667777777


Q ss_pred             EEEeCCCCCCChhhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHhC-Ccee
Q 014065          230 AVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFG-APVL  308 (431)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~-~~i~  308 (431)
                      ++++.+  .+++..+++.|+++++|+++++|++++.+++.... ...+++++|.++  |+.+++++++++.+.++ +.++
T Consensus       674 ~vvl~~--~~~~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~~~~-~~~~~~slr~~~--g~gl~~~l~~~~~~~~~~~~l~  748 (994)
T PRK07868        674 RIALSR--GLDPDRFVQEVRQYGVTVVSYTWAMLREVVDDPAF-VLHGNHPVRLFI--GSGMPTGLWERVVEAFAPAHVV  748 (994)
T ss_pred             EEEecC--CCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCC-ccCCCCceEEEe--cCCCCHHHHHHHHHHhCchhee
Confidence            777776  68999999999999999999999999999876432 223467899766  34599999999999985 8899


Q ss_pred             cccCcccccCcccCCCCCCCCCCCCCCccccc-cc-eEEEE-----------CCCC--CcCCCCceeeEEEeCCcccccc
Q 014065          309 EAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQ-EIAIL-----------DEIG--VPQEGGAKGEVCIRGPNVTKGY  373 (431)
Q Consensus       309 ~~yg~tE~~~~~~~~~~~~~~~~~~~~~G~~~-~~-~~~i~-----------d~~~--~~~~~~~~Gel~v~~~~~~~gy  373 (431)
                      +.||+||++..... .    ....++++|+|+ +. ++++.           |++|  +.++.|+.|||+++++..    
T Consensus       749 ~~YG~TE~~~~~~~-~----~~~~~~svG~p~pg~~~v~i~~~d~~~g~li~d~~G~~~~~~~ge~Gel~~~~~~~----  819 (994)
T PRK07868        749 EFFATTDGQAVLAN-V----SGAKIGSKGRPLPGAGRVELAAYDPEHDLILEDDRGFVRRAEVNEVGVLLARARGP----  819 (994)
T ss_pred             eeeecccccccccc-c----CCCCCcccCCccCCCCceeEEEecCcCCceeecCCceEEEcCCCCceEEEEecCCC----
Confidence            99999998754432 1    124567999999 65 56553           4556  568889999999999753    


Q ss_pred             ccCcchh--hhccc--CCceecCceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          374 KNNPEAN--KSAFL--FGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       374 ~~~~~~~--~~~~~--~g~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      . +++.+  +..|.  +|||+|||+|++|+||+|+|+||+||+||++|.+|+|.|||.+.
T Consensus       820 ~-~p~~t~~~~~~~~~dgw~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~EIE~~L  878 (994)
T PRK07868        820 I-DPTASVKRGVFAPADTWISTEYLFRRDDDGDYWLVDRRGSVIRTARGPVYTEPVTDAL  878 (994)
T ss_pred             C-ChhhhhHhcccccCCEEEeccceEEEcCCCCEEEeccCCCEEEeCCceEcHHHHHHHH
Confidence            2 23322  22242  68999999999999999999999999999999999999999864

>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]

Probab=100.00  E-value=1.2e-53  Score=382.39  Aligned_cols=415  Identities=25%  Similarity=0.323  Sum_probs=334.4

Q ss_pred             CcccHHHHHHHHHHhcCCcceEEecC-CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCc
Q 014065            2 EGVTLIGLLNQVIDQFSSKRALSVSG-KFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARA   80 (431)
Q Consensus         2 ~~~tl~~~l~~~a~~~p~~~a~~~~~-~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~   80 (431)
                      +..|+.++|.++++++|+++|+++.+ .+++||+|++++++++|+.|...|++.||+||++++|.++++.++|+++++|+
T Consensus        75 ~~~ti~~~F~~~vrr~p~k~aii~~~~~~~~Tf~e~~~~s~~~A~~~~~~~l~~GD~VAL~men~pefv~lWlGLaKlGv  154 (649)
T KOG1179|consen   75 ERRTIAELFLSQVRRQPDKPAIIYEGPFQSLTFAELDARSNRVANYLHAEGLKAGDVVALLMENRPEFVALWLGLAKLGV  154 (649)
T ss_pred             cCCcHHHHHHHHHHhCCCccEEEEeCCCceeeHHHHHHHHHHHHHHHHHhhcccCCEEEEecCCChhHHHHHHhHHhhCc
Confidence            35789999999999999999999865 37999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCcccccccccc----cchhhhhhhccccccccc---c
Q 014065           81 TAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLD----ADSELTLSLAHSESDTNA---I  153 (431)
Q Consensus        81 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~---~  153 (431)
                      +...+|+++..+.|.|.+..++++++|++.+..+.+.+..+.+..........+    .+....+..........+   .
T Consensus       155 ~tA~iNtNlR~~~LlHsi~~s~aralv~~~el~~~~~e~~~~l~~~~i~~~~~~~~~~~~g~~~L~~~l~~~~~~~vp~~  234 (649)
T KOG1179|consen  155 ITAFINTNLRGEPLLHSITVSGARALVVGPELLNALEEILPLLIKNGIHVFSLGPTSVPDGIESLLAKLSAAPKHPVPVS  234 (649)
T ss_pred             eeeeeccccccchhhhhhhhcCceEEEECHHHHHHHHhcchhhhhccceEEecCCCCCCchHHHHHHhhcccccCCCCcc
Confidence            999999999999999999999999999999988777776443322211111111    111112221111111111   3


Q ss_pred             ccCCCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEe
Q 014065          154 SKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTL  233 (431)
Q Consensus       154 ~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~  233 (431)
                      ........++++++|||||||.||+.+++|......+..+...++++++|+++..+|++|..+.+.++..++..|+|+++
T Consensus       235 ~~~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~~~g~~~~DvvY~~lPLYHsaa~ilGi~~~l~~GaT~Vl  314 (649)
T KOG1179|consen  235 TRSGLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYYVFGMTADDVVYTTLPLYHSAAGILGIGGCLLHGATVVL  314 (649)
T ss_pred             cCCCccccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCccceEEEcchhHHHHHHHHHHHHHHhcCceEEE
Confidence            34455678899999999999999999999999999888899999999999999999999999999999999999999999


Q ss_pred             CCCCCCChhhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHhCCc-eecccC
Q 014065          234 PAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAP-VLEAYA  312 (431)
Q Consensus       234 ~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~-i~~~yg  312 (431)
                      ..  .|+...+|+...+|+||++.....+.+.|++.+....+. -..+|  +.-|..+.++.++.|.++||.. |...||
T Consensus       315 rk--KFSAS~FW~DC~k~~~Tv~QYIGElcRYLl~~p~~~~er-~HkVR--la~GNGLR~diW~~Fv~RFg~~~IgE~Yg  389 (649)
T KOG1179|consen  315 RK--KFSASNFWDDCRKYNVTVIQYIGELCRYLLNQPPSPEER-QHKVR--LAYGNGLRPDIWQQFVKRFGIIKIGEFYG  389 (649)
T ss_pred             ec--ccchhhhHHHHHHhCCeeeehHHHHHHHHHcCCCChhhc-CceEE--EEecCCCCchHHHHHHHHcCCCeEEEEec
Confidence            88  999999999999999999999999999999887654322 23444  5678899999999999999855 999999


Q ss_pred             cccccCcccCCCCCCCCCCCCCCccc------cc-cceEEEEC-CCCC----------cCCCCceeeEEEe--CCc---c
Q 014065          313 MTEATHLMSSNPLPEDGPHKPGSVGR------PV-GQEIAILD-EIGV----------PQEGGAKGEVCIR--GPN---V  369 (431)
Q Consensus       313 ~tE~~~~~~~~~~~~~~~~~~~~~G~------~~-~~~~~i~d-~~~~----------~~~~~~~Gel~v~--~~~---~  369 (431)
                      +||...-....      ....+.+|+      -+ +.++.-+| .+|+          +|+.||.|.++-+  ...   -
T Consensus       390 aTEgn~~~~N~------d~~vGA~G~~~~~~~~l~p~~LIk~D~~t~E~iRd~~G~Ci~~~~GEpGlLv~~i~~k~P~~~  463 (649)
T KOG1179|consen  390 ATEGNSNLVNY------DGRVGACGFMSRLLKLLYPFRLIKVDPETGEPIRDSQGLCIPCPPGEPGLLVGKIVQKNPLRS  463 (649)
T ss_pred             cccCcceeeee------cCccccccchhhhhhhccceEEEEecCCCCceeecCCceEEECCCCCCceEEEEeccCCchhh
Confidence            99987544433      123344444      12 45555455 3343          5788899976433  223   3


Q ss_pred             ccccccCcchhhhc-----ccCC--ceecCceEEEcCCCeEEEecccccceecCCeeccccceec
Q 014065          370 TKGYKNNPEANKSA-----FLFG--WFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFL  427 (431)
Q Consensus       370 ~~gy~~~~~~~~~~-----~~~g--~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~  427 (431)
                      +.||.++.+.+++.     |..|  ||+|||+-.+|+.|++||.+|..|.+...|+|++-.|||.
T Consensus       464 F~GY~g~~~~t~kKl~rDVFkkGD~~f~tGDlLv~D~~GylYF~DRtGDTFRWKGENVsTtEVe~  528 (649)
T KOG1179|consen  464 FLGYAGPKKATEKKLLRDVFKKGDVYFNTGDLLVADELGYLYFKDRTGDTFRWKGENVSTTEVED  528 (649)
T ss_pred             hccccCchhhhhhhhHHhhhccCcEEEeeCcEEEEecCCcEEEeccCCCceeecCCcccHHHHHH
Confidence            78999866655444     3323  9999999999999999999999999999999999999985

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed

Probab=100.00  E-value=7.5e-54  Score=408.24  Aligned_cols=346  Identities=20%  Similarity=0.273  Sum_probs=284.4

Q ss_pred             cccHHHHHHHHHHHHHHHHHcCC-CCCCEEEEECCCcHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHhcCCceEEEe
Q 014065           30 DLTYSRIHELVERAASRLVAAGI-NAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLT  108 (431)
Q Consensus        30 ~~Ty~el~~~~~~~a~~L~~~gl-~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~  108 (431)
                      -+.|+||.++++++|++|.+.|+ ++|++|+++++|+++++++++||+++|++++|++|.++.+++.++++.++++++++
T Consensus        19 ~~~~~el~~~~~~~a~~L~~~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~i~   98 (452)
T PRK07445         19 GYNSQRFYQLAQQLYLQLQQLATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQIWG   98 (452)
T ss_pred             ecChHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEEEe
Confidence            46799999999999999999988 57999999999999999999999999999999999999999999999999999998


Q ss_pred             cCCchhHHHHHHHhcCcccccccccccchhhhhhhccccccccccccCCCCCCCeEEEEeccCCCCCCCeeeechHHHHH
Q 014065          109 PAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAA  188 (431)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~  188 (431)
                      +.+.....               . ..        .   .    .......+++.++++|||||||.||+|.+||.++..
T Consensus        99 ~~~~~~~~---------------~-~~--------~---~----~~~~~~~~~~~~~i~~TSGTTG~PKgV~~t~~~l~~  147 (452)
T PRK07445         99 LDQLKLSH---------------P-PP--------L---P----SQGILPNLETGWIMIPTGGSSGQIRFAIHTWETLTA  147 (452)
T ss_pred             cCcccccc---------------C-CC--------C---C----ccccCCCCCCcEEEEeCCCCCCCCcEEEechHHHHH
Confidence            76532110               0 00        0   0    001123468899999999999999999999999988


Q ss_pred             HHHHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCCCCCCChhhHHHHHHHhcceeeecchHHHHHHHh
Q 014065          189 SVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLD  268 (431)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~  268 (431)
                      .+......+++.+ ++.++.+|++|.+|+.. ++.++..|+++++.+.  ...........+++++++.++|++++.+++
T Consensus       148 ~~~~~~~~~~~~~-~~~~~~~Pl~h~~g~~~-~~~~l~~G~t~v~~~~--~~~~~~~~~~~~~~~t~~~~vP~~l~~l~~  223 (452)
T PRK07445        148 SVQGFQRYFQLQQ-VNSFCVLPLYHVSGLMQ-FMRSFLTGGKLVILPY--KRLKSGQELPPNPSDFFLSLVPTQLQRLLQ  223 (452)
T ss_pred             HHHHHHHHhcCCC-CceEeccCchhhhhHHH-HHHHHHcCCeEEEcCh--HhccchhhhhhhcCceEEEehHHHHHHHHh
Confidence            8887777777755 46788999999999865 7889999999998762  222222334457889999999999999886


Q ss_pred             cccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHhCCceecccCcccccCcccCCCCCCCCCCCCCCccccc-cceEEEE
Q 014065          269 RHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAIL  347 (431)
Q Consensus       269 ~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~  347 (431)
                      ..    ...++++|.+++||++++++..+.+.+ +++++++.||+||++..+..... .+......++|+|+ +.+++|+
T Consensus       224 ~~----~~~l~~l~~i~~gG~~l~~~~~~~~~~-~~~~l~~~YG~TE~~~~~~~~~~-~~~~~~~~~~G~~~p~~~v~i~  297 (452)
T PRK07445        224 LR----PQWLAQFRTILLGGAPAWPSLLEQARQ-LQLRLAPTYGMTETASQIATLKP-DDFLAGNNSSGQVLPHAQITIP  297 (452)
T ss_pred             hC----hhhhhcceEEEECCccCCHHHHHHHHh-cCCeEecCcchhhhcccccccCc-hhhccCCCcCCccCCCCeEEEc
Confidence            32    223689999999999999999998875 58999999999999865544321 22233456899999 7899987


Q ss_pred             CCCCCcCCCCceeeEEEeCCccccccccCcchhhhcccCCceecCceEEEcCCCeEEEecccccceecCCeeccccceec
Q 014065          348 DEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFL  427 (431)
Q Consensus       348 d~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~  427 (431)
                              .++.|||+++|+.++.||+++...     .+|||+|||+|++|+||++++.||.||+||++|++|+|.|||.
T Consensus       298 --------~g~~Gel~v~g~~~~~gY~~~~~~-----~~g~~~TGDl~~~d~dG~l~~~GR~dd~I~~~G~~V~p~eIE~  364 (452)
T PRK07445        298 --------ANQTGNITIQAQSLALGYYPQILD-----SQGIFETDDLGYLDAQGYLHILGRNSQKIITGGENVYPAEVEA  364 (452)
T ss_pred             --------CCCcceEEEeCCccchhhcCCccC-----CCCEEECCCEEEEcCCCCEEEEeecCCEEEECCEEECHHHHHH
Confidence                    356799999999999999975321     3689999999999999999999999999999999999999998


Q ss_pred             cc
Q 014065          428 AK  429 (431)
Q Consensus       428 a~  429 (431)
                      +.
T Consensus       365 ~l  366 (452)
T PRK07445        365 AI  366 (452)
T ss_pred             HH
Confidence            63

>PLN03051 acyl-activating enzyme; Provisional

Probab=100.00  E-value=2.9e-53  Score=410.69  Aligned_cols=362  Identities=22%  Similarity=0.235  Sum_probs=276.1

Q ss_pred             CCCcHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHhcCCceEEEecCCc------hhHHHHHHHhcCccccccccccc
Q 014065           62 FPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEG------NAAAQAAASKLNISHATATLLDA  135 (431)
Q Consensus        62 ~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~------~~~~~~~~~~~~~~~~~~~~~~~  135 (431)
                      ++|++++++++|||+++|++++|+++.++.+++.++++.++++++|+++..      .+...+.................
T Consensus         1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   80 (499)
T PLN03051          1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPLYSKVVEAAPAKAIVLPAAGE   80 (499)
T ss_pred             CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeecchhhhhhcccceEEEEeccCc
Confidence            589999999999999999999999999999999999999999999998642      12222221111111000000000


Q ss_pred             -------chhhhhhhcc---ccc---cccccccCCCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCC
Q 014065          136 -------DSELTLSLAH---SES---DTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTES  202 (431)
Q Consensus       136 -------~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~  202 (431)
                             .....+....   ...   ...........++++++++|||||||.||+|.++|.+++.++......+++.++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~  160 (499)
T PLN03051         81 PVAVPLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAHMDIQPG  160 (499)
T ss_pred             ccCCccccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHHHHHHHHhcCCCCC
Confidence                   0000111000   000   000111112346899999999999999999999999988776665666788899


Q ss_pred             CeEEEecChhhHHHHHHHHHHHHhcCCEEEeCCCCCCChhhHHHHHHHhcceeeecchHHHHHHHhccc-CCCCCCCCCc
Q 014065          203 DSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHV-AKPEPVYPKL  281 (431)
Q Consensus       203 ~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~-~~~~~~~~~l  281 (431)
                      |++++.+|++|..++. .++.++..|+++++.+. .+++..+++.|+++++|++.++|+++..+++... .....+++++
T Consensus       161 d~~l~~~pl~h~~g~~-~~~~~l~~G~t~v~~~~-~~~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~~~~~~~~~~~~L  238 (499)
T PLN03051        161 DVVCWPTNLGWMMGPW-LLYSAFLNGATLALYGG-APLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAFAMEGLDWSKL  238 (499)
T ss_pred             CEEEEccCcceeeehH-HHHHHHHcCCEEEecCC-CCCcHHHHHHHHHhCCcEEEeCHHHHHHHHhcCccccccCCchhh
Confidence            9999999999999976 48889999999998763 4678899999999999999999999999887542 1123457899


Q ss_pred             cEEEeccCCCcHHHHHHHHHHh--CCceecccCcccccCcccCCCCCCCCCCCCCCccccc-cceEEEECCCCCcCCCC-
Q 014065          282 RFIRSCSASLAPVILSRLEEAF--GAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGG-  357 (431)
Q Consensus       282 ~~i~~~g~~~~~~~~~~~~~~~--~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d~~~~~~~~~-  357 (431)
                      |.+++||++++++..+++.+.+  ++.+++.||+||++..+.....  ......+++|+|. +++++|+|++|++++.| 
T Consensus       239 r~i~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~--~~~~~~~~~G~p~~~~~~~ivd~~g~~~~~g~  316 (499)
T PLN03051        239 RVFASTGEASAVDDVLWLSSVRGYYKPVIEYCGGTELASGYISSTL--LQPQAPGAFSTASLGTRFVLLNDNGVPYPDDQ  316 (499)
T ss_pred             eEEEecCCCCCHHHHHHHHHhccccceeEeeeccccccceeecccc--cCCCCCccccCCCCCceEEEECCCCCCCCCCC
Confidence            9999999999999998877643  4789999999998754332211  1233467899998 89999999999999988 


Q ss_pred             -ceeeEEEeCCcc--ccccccCcchhhhcccCC----------ceecCceEEEcCCCeEEEecccccceecCCeeccccc
Q 014065          358 -AKGEVCIRGPNV--TKGYKNNPEANKSAFLFG----------WFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESIS  424 (431)
Q Consensus       358 -~~Gel~v~~~~~--~~gy~~~~~~~~~~~~~g----------~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~  424 (431)
                       +.|||+++||.+  +.||++++. + ..+.+|          ||+|||+|++|+||+++|+||.||+||++|++|+|.|
T Consensus       317 ~~~Gel~v~g~~~~~~~gy~~~~~-~-~~~~~g~~~~~~~~~~~~~TGDlg~~d~dG~l~~~gR~~d~ik~~G~~v~p~E  394 (499)
T PLN03051        317 PCVGEVALAPPMLGASDRLLNADH-D-KVYYKGMPMYGSKGMPLRRHGDIMKRTPGGYFCVQGRADDTMNLGGIKTSSVE  394 (499)
T ss_pred             CcceEEEEecCcCCCCccccCCcc-c-ceeeecCCccccCCcceeecCCeEEECCCCcEEEEeccCCEEeeCCEECCHHH
Confidence             579999999976  579997643 3 234344          6899999999999999999999999999999999999


Q ss_pred             eeccc
Q 014065          425 LFLAK  429 (431)
Q Consensus       425 iE~a~  429 (431)
                      ||.+.
T Consensus       395 IE~~l  399 (499)
T PLN03051        395 IERAC  399 (499)
T ss_pred             HHHHH
Confidence            99864

>TIGR01923 menE O-succinylbenzoate-CoA ligase

Probab=100.00  E-value=3.1e-52  Score=398.38  Aligned_cols=361  Identities=29%  Similarity=0.414  Sum_probs=300.9

Q ss_pred             cHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHhcCCceEEEecCC
Q 014065           32 TYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAE  111 (431)
Q Consensus        32 Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~  111 (431)
                      ||+||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++|++++|+++.++.+++..+++..+++.+++++.
T Consensus         1 Ty~~l~~~~~~~a~~l~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   80 (436)
T TIGR01923         1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDSL   80 (436)
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEEcCc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             chhHHHHHHHhcCcccccccccccchhhhhhhccccccccccccCCCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHH
Q 014065          112 GNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVS  191 (431)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~  191 (431)
                      ......          ....+    ..  +...   .............+++++++|||||||.||+|.++|.++...+.
T Consensus        81 ~~~~~~----------~~~~~----~~--~~~~---~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~s~~~~~~~~~  141 (436)
T TIGR01923        81 LEEKDF----------QADSL----DR--IEAA---GRYETSLSASFNMDQIATLMFTSGTTGKPKAVPHTFRNHYASAV  141 (436)
T ss_pred             ccccce----------eecch----Hh--hhhc---ccccccccccCCcCceEEEEeCCCCCCCCcEEEEehHHHHHHHH
Confidence            321100          00000    00  0000   00011112334567899999999999999999999999999888


Q ss_pred             HHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCCCCCCChhhHHHHHHHhcceeeecchHHHHHHHhccc
Q 014065          192 NIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHV  271 (431)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~  271 (431)
                      .....++++++++++..+|++|..++.. ++.++..|+++++.+  .+  ..+++.++++++|++.++|+++..+++...
T Consensus       142 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~l~~g~~~~~~~--~~--~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~  216 (436)
T TIGR01923       142 GSKENLGFTEDDNWLLSLPLYHISGLSI-LFRWLIEGATLRIVD--KF--NQLLEMIANERVTHISLVPTQLNRLLDEGG  216 (436)
T ss_pred             HHHhhcCCCCCceEEEccCcHhHHHHHH-HHHHHhcCceEEecc--hH--HHHHHHHHHhCCeEEEeHHHHHHHHHhCcC
Confidence            8888889999999999999999998865 889999999999987  22  489999999999999999999999987643


Q ss_pred             CCCCCCCCCccEEEeccCCCcHHHHHHHHHHhCCceecccCcccccCcccCCCCCCCCCCCCCCccccc-cceEEEECCC
Q 014065          272 AKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEI  350 (431)
Q Consensus       272 ~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d~~  350 (431)
                      .     .+++|.++++|+++++++.+.+.. +++.+++.||+||++..+.......  .....++|+|+ ++++++.+++
T Consensus       217 ~-----~~~l~~~~~~G~~~~~~~~~~~~~-~~~~~~~~YG~tE~~~~~~~~~~~~--~~~~~~~G~~~~~~~~~i~~~~  288 (436)
T TIGR01923       217 H-----NENLRKILLGGSAIPAPLIEEAQQ-YGLPIYLSYGMTETCSQVTTATPEM--LHARPDVGRPLAGREIKIKVDN  288 (436)
T ss_pred             C-----CCceEEEEECCCCCCHHHHHHHHH-hCCceeeEecCCccchhccCcCccc--cccccCCCccCCCcEEEEEeCC
Confidence            2     268999999999999999998875 5999999999999987665543211  12222489998 7888884432


Q ss_pred             CCcCCCCceeeEEEeCCccccccccCcchhhhcccCCceecCceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          351 GVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       351 ~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      .     ++.|||+++++.++.||+++++.+...+.+|||+|||++++++||.+++.||.+|+||++|++++|.+||.+.
T Consensus       289 ~-----~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~v~~~~iE~~l  362 (436)
T TIGR01923       289 K-----EGHGEIMVKGANLMKGYLYQGELTPAFEQQGWFNTGDIGELDGEGFLYVLGRRDDLIISGGENIYPEEIETVL  362 (436)
T ss_pred             C-----CCceEEEEECCccchhhCCChhhhhhhhcCCCeeccceEEEcCCCCEEEeccccCeEEeCCEeeCHHHHHHHH
Confidence            2     2679999999999999999877776666789999999999999999999999999999999999999999863

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.

>PRK08308 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.1e-50  Score=379.47  Aligned_cols=330  Identities=16%  Similarity=0.204  Sum_probs=285.7

Q ss_pred             EEecCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHhcCC
Q 014065           23 LSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSE  102 (431)
Q Consensus        23 ~~~~~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~  102 (431)
                      +++.+ +++||.||.++++++|+.|. .|+++|++|+++++|+++++++++|++++|++++|+++..+.+++..+++.++
T Consensus         2 ~~~~~-~~~ty~el~~~~~~~a~~l~-~~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~   79 (414)
T PRK08308          2 LIVND-EEYSKSDFDLRLQRYEEMEQ-FQEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEAAIRMAKRAG   79 (414)
T ss_pred             eEecC-ceecHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHHHHHHHHhCC
Confidence            45444 79999999999999999985 68999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEecCCchhHHHHHHHhcCcccccccccccchhhhhhhccccccccccccCCCCCCCeEEEEeccCCCCCCCeeeec
Q 014065          103 SKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLT  182 (431)
Q Consensus       103 ~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s  182 (431)
                      ++.+++++....                 ..              .      .....++++++++|||||||.||+|.++
T Consensus        80 ~~~~i~~~~~~~-----------------~~--------------~------~~~~~~~~~~~i~~TSGtTG~PKgv~~s  122 (414)
T PRK08308         80 CHGLLYGESDFT-----------------KL--------------E------AVNYLAEEPSLLQYSSGTTGEPKLIRRS  122 (414)
T ss_pred             CCEEEecCcccc-----------------cc--------------c------CCCCCCCCceEEEECCCCCCCCcEEEEe
Confidence            999998763110                 00              0      0113467889999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCCCCCCChhhHHHHHHHhcceeeecchHH
Q 014065          183 QNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTI  262 (431)
Q Consensus       183 ~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~  262 (431)
                      |.++..++..+...+++..+++.+..+|++|.+++...++.++..|+++++.+  .+++..+++.+++++++.++++|+.
T Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~--~~~~~~~~~~l~~~~~t~~~~~P~~  200 (414)
T PRK08308        123 WTEIDREIEAYNEALNCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIIT--NKNPKFALNILRNTPQHILYAVPLM  200 (414)
T ss_pred             hHhHHHHHHHHHHhhCCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecC--CCCHHHHHHHHHHhCCeEEEcCHHH
Confidence            99999888888888888899999999999999999888999999999999887  6789999999999999999999999


Q ss_pred             HHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHhCCceecccCcccccCcccCCCCCCCCCCCCCCccccc-c
Q 014065          263 HQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-G  341 (431)
Q Consensus       263 ~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~~~G~~~-~  341 (431)
                      +..+.+....     ..+++.++++|++++++..+.+++. +.++++.||+||++.+....     ....++++|+|+ +
T Consensus       201 ~~~l~~~~~~-----~~~l~~~~~~G~~l~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~-----~~~~~~~~G~p~~~  269 (414)
T PRK08308        201 LHILGRLLPG-----TFQFHAVMTSGTPLPEAWFYKLRER-TTYMMQQYGCSEAGCVSICP-----DMKSHLDLGNPLPH  269 (414)
T ss_pred             HHHHHhcCCc-----cccccEEEEccCCCCHHHHHHHHHh-CChhhhccCccccCCeeecC-----CCCCCCccCccCCC
Confidence            9999876432     1368889999999999999999876 67899999999998644322     123457899999 7


Q ss_pred             ceEEEECCCCCcCCCCceeeEEEeCCccccccccCcchhhhcccCCceecCceEEEcCCCeEEEecccccceecCCeecc
Q 014065          342 QEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHE  421 (431)
Q Consensus       342 ~~~~i~d~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~  421 (431)
                      +++++.++      .++.|||++++.                  ++||+|||+|++|+||++++.||.+|+||++|++|+
T Consensus       270 ~~~~~~~~------~~~~gel~v~~~------------------~~~~~TGDl~~~~~dg~l~~~GR~~~~ik~~G~~v~  325 (414)
T PRK08308        270 VSVSAGSD------ENAPEEIVVKMG------------------DKEIFTKDLGYKSERGTLHFMGRMDDVINVSGLNVY  325 (414)
T ss_pred             eEEEEecC------CCCCceEEEEcC------------------CceEECCceEEECCCccEEEecccCCeEEECCEEEC
Confidence            88888763      245699999752                  469999999999999999999999999999999999


Q ss_pred             ccceecc
Q 014065          422 SISLFLA  428 (431)
Q Consensus       422 ~~~iE~a  428 (431)
                      |.|||.+
T Consensus       326 p~eIE~~  332 (414)
T PRK08308        326 PIEVEDV  332 (414)
T ss_pred             HHHHHHH
Confidence            9999986

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=6.7e-43  Score=349.29  Aligned_cols=406  Identities=26%  Similarity=0.335  Sum_probs=336.3

Q ss_pred             ccHHHHHHHHHHhcCCcceEEecCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcEEE
Q 014065            4 VTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAA   83 (431)
Q Consensus         4 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v   83 (431)
                      .++.+.|.+.+...|++.|+... +..+||+|+..+++++|+.|.+.|+.+++.|+++.+.+++++++++|++++|..++
T Consensus       227 ~~i~~~f~~~a~~~p~~~a~~~~-~~~lty~el~~~a~~la~~l~~~g~~~~~~V~i~~~rs~~~i~~~l~ilkaG~~yv  305 (642)
T COG1020         227 LTIHLLFEEQAATTPDAVALVRG-GQQLTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLAVLKAGAAYV  305 (642)
T ss_pred             chHHHHHHHHHHhCCCceeEecC-CCcccHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCHHHHHHHHHHHhcCCeEe
Confidence            46899999999999999998865 47999999999999999999999999999999999889999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCcccccccccccchhhhhhhccccccccccccCCCCCCCe
Q 014065           84 PLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDV  163 (431)
Q Consensus        84 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (431)
                      |++|.++.+++.++++...++.+++.........      ....  +........        ..... .......+++.
T Consensus       306 P~d~~~P~~r~~~~l~~~~~~~~~~~~~~~~~~~------~~~~--~~~~~~~~~--------~~~~~-~~~~~~~~~~~  368 (642)
T COG1020         306 PLDPLYPAERLAYILEDSRPTLLLTQAHLRVDDV------GLPG--LALDDALSE--------IPDTD-PIPQALLGDAL  368 (642)
T ss_pred             cCCCCChHHHHHHHHhhcCccEEEeccccccccc------cCCc--ccccccccc--------CCccC-cccccCCCCCe
Confidence            9999999999999999999999998733211000      0000  000000000        00000 00233456899


Q ss_pred             EEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCCCC-CCChh
Q 014065          164 ALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAG-RFSAS  242 (431)
Q Consensus       164 ~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~-~~~~~  242 (431)
                      +|++|||||||.||||..+|.++.+.+......+....+++++...++.+..+... ++.++..|+++++.+.. ..++.
T Consensus       369 ayiiytsgstg~Pkgv~~~h~~~~~~~~~~~~~~~~~~~d~~l~~~s~~fD~~~~~-~f~~l~~G~~l~~~~~~~~~~~~  447 (642)
T COG1020         369 AYIIYTSGSTGQPKGVRIEHRALANLLNDAGARFGLDADDRVLALASLSFDASVFE-IFGALLEGARLVLAPALLQVDPA  447 (642)
T ss_pred             EEEEEccCCCCCCCCceecCHHHHHHHHHHHHhcCCCcccEEeecCCcccchhHHH-HHHHHhCCCEEEecCccccCCHH
Confidence            99999999999999999999999987777777799999999999999877777666 89999999999987743 34888


Q ss_pred             hHHHHHHHhcceeeecchHHHHHHHhcccCC-CCCCCCCccEEEeccCCCcHHHHHHHHHHh--CCceecccCcccccCc
Q 014065          243 TFWQDMIKYNATWYTAVPTIHQIVLDRHVAK-PEPVYPKLRFIRSCSASLAPVILSRLEEAF--GAPVLEAYAMTEATHL  319 (431)
Q Consensus       243 ~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~-~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~--~~~i~~~yg~tE~~~~  319 (431)
                      .+.+.+.+++++++..+|..+..++...... .....+.+|.+++||+.++..+...+....  ...+.+.||+||+...
T Consensus       448 ~l~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~l~~~ygpTe~~~~  527 (642)
T COG1020         448 ALLELLEAQGITVLLLVPLLLRLLLLAALAPDLISPCERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEATLD  527 (642)
T ss_pred             HHHHHHHHcCCEEEEecHHHHHHHHhchhhccccCCcccccEEEEcCCCCCHHHHHHHHHhccccceEeeccCccHHhhh
Confidence            9999999999999999999999998762221 112234599999999999999999888765  4689999999997766


Q ss_pred             ccCCCCCCCCCCCCCCccccc-cceEEEECCCCCcCCCCceeeEEEeCCccccccccCcchhhhcccCC-ceecCceEEE
Q 014065          320 MSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFG-WFHTGDIGYF  397 (431)
Q Consensus       320 ~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g-~~~TGD~~~~  397 (431)
                      ............ ...+|+|+ +..+.|+|+.+++++.|..||+++.|.++.+||+++++.+.+.|... +|+|||++++
T Consensus       528 ~~~~~~~~~~~~-~~piG~p~~n~~~~ild~~~~~~p~gv~gel~i~g~~~a~gy~~~p~lt~~~f~~~~~y~tgD~~r~  606 (642)
T COG1020         528 APSFPISAELES-RVPIGRPVANTQLYILDQGLRPLPLGVPGELYIAGLGLALGYLNRPDLTAERFIALRLYRTGDLARP  606 (642)
T ss_pred             eeeEEcccccCC-CCCcceeeCCCeEEEECCCCCcCCCCCCeeeEECCcchhhhhcCChhhhHHHhhhccCccCCCeeeE
Confidence            554443222222 56899999 78999999889999999999999999999999999999999999775 9999999999


Q ss_pred             cCCCeEEEecccccceecCCeeccccceeccc
Q 014065          398 DSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       398 ~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      ++||.+.++||.|+++|++|.+|.+.|||.+.
T Consensus       607 ~~dg~~e~lgr~D~qvki~g~Riel~eie~~l  638 (642)
T COG1020         607 LADGALEYLGRKDSQVKIRGFRIELGEIEAAL  638 (642)
T ss_pred             CCCCeEEEeccccceeEeceEecCcHHHHHHH
Confidence            99999999999999999999999999999864

>PTZ00297 pantothenate kinase; Provisional

Probab=100.00  E-value=1.3e-42  Score=358.07  Aligned_cols=384  Identities=17%  Similarity=0.169  Sum_probs=283.0

Q ss_pred             cccHHHHHHHHHHhcCCcceEEec---C-CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHh
Q 014065            3 GVTLIGLLNQVIDQFSSKRALSVS---G-KFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRA   78 (431)
Q Consensus         3 ~~tl~~~l~~~a~~~p~~~a~~~~---~-~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~   78 (431)
                      ..|+.++|.+.++++|+++|+...   + .+.+||+|+.++++++|++|++.|+++||+|+|+++|+++|+++.+||+++
T Consensus       426 ~~Tl~dll~~~a~~~pd~~al~~~~~~g~~~~lTY~El~~~V~~lAa~L~~lGV~~GDrVaIls~N~~Ewvia~lA~~~~  505 (1452)
T PTZ00297        426 VRSLGEMWERSVTRHSTFRCLGQTSESGESEWLTYGTVDARARELGSGLLALGVRPGDVIGVDCEASRNIVILEVACALY  505 (1452)
T ss_pred             CCCHHHHHHHHHHHCCCCeEEEEeccCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Confidence            358999999999999999999742   2 257999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCccccccccccc---ch----------hhhhhhcc
Q 014065           79 RATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDA---DS----------ELTLSLAH  145 (431)
Q Consensus        79 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~----------~~~~~~~~  145 (431)
                      |++.+|+++.  .+++.++++.++++++|++.+..+.+.+.... .+.. ++.+.+.   ..          ...+....
T Consensus       506 GaV~VPly~t--~~eL~yIL~~S~akvVfv~~~~l~kl~~i~~~-~Lr~-IIv~d~~~~~~~~~~~~~~~i~~~s~~~ll  581 (1452)
T PTZ00297        506 GFTTLPLVGK--GSTMRTLIDEHKIKVVFADRNSVAAILTCRSR-KLET-VVYTHSFYDEDDHAVARDLNITLIPYEFVE  581 (1452)
T ss_pred             CCEEEeCCCC--HHHHHHHHHhcCCcEEEEchhHHHHHHhhccc-CCcE-EEEECCCcccccccccccCCcceeeHHHHH
Confidence            9999999754  67899999999999999997766655443321 2211 1112110   00          00111111


Q ss_pred             ccccc-cccccCCCCCCCeEEEEe---ccCCCCCCCeeeechHHHHHHHHHHHHHh---cCCCCCeEEEecChhhHHHHH
Q 014065          146 SESDT-NAISKLTNDPSDVALFLH---TSGTTSRPKGVPLTQNNLAASVSNIKSVY---KLTESDSTVIVLPLFHVHGML  218 (431)
Q Consensus       146 ~~~~~-~~~~~~~~~~~~~~~i~~---TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~~~~p~~~~~~~~  218 (431)
                      ..... .........+++++.++|   ||||||.||||++||.+++.++.......   ...++|+++.++|++|.++..
T Consensus       582 ~~G~~~~~~~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~~~~~~~~~D~~Ls~LPLaHI~er~  661 (1452)
T PTZ00297        582 QKGRLCPVPLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGVLPSSFKKHLMVHFTPFAMLFNRV  661 (1452)
T ss_pred             hcCcccCccccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhccccCCCCCCEEEEechHHHHHHHH
Confidence            11100 111122346788988885   99999999999999999999888765432   356789999999999999965


Q ss_pred             HHHHHHHhcCCEEEeCCCCCCChhhHHHHHHHhcceeeecchHHHHHHHhcccCCC------------------------
Q 014065          219 AGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKP------------------------  274 (431)
Q Consensus       219 ~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~------------------------  274 (431)
                      . .+.++..|+++..     +++..+++.+++++||+++++|++|+.+.+......                        
T Consensus       662 ~-~~~~l~~G~~I~~-----~d~~~lledL~~~rPTv~~~VPrv~ekI~~~i~~~~~~~~~~~~~lf~~A~~~k~~~~~~  735 (1452)
T PTZ00297        662 F-VLGLFAHGSAVAT-----VDAAHLQRAFVKFQPTILVAAPSLFSTSRLQLSRANERYSAVYSWLFERAFQLRSRLINI  735 (1452)
T ss_pred             H-HHHHHHcCCEEEe-----CCHHHHHHHHHHHCCEEEEecHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhc
Confidence            5 7788999999864     368899999999999999999999998865431110                        


Q ss_pred             -CC----------------CCCCccEEEeccC--CCcHHHHHHHHHHhCCceecccCcccccCcccCCCCCCCCCCCCCC
Q 014065          275 -EP----------------VYPKLRFIRSCSA--SLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGS  335 (431)
Q Consensus       275 -~~----------------~~~~l~~i~~~g~--~~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~~  335 (431)
                       ..                .-..+|.+++||.  +++..+..      +++++..||+||+.   +.+...   ..  ..
T Consensus       736 g~~~~~l~d~LVf~kir~~lGGrlr~~isGga~~~l~~~l~~------~i~i~~g~glTE~~---~~~~~~---~~--~~  801 (1452)
T PTZ00297        736 HRRDSSLLRFIFFRATQELLGGCVEKIVLCVSEESTSFSLLE------HISVCYVPCLREVF---FLPSEG---VF--CV  801 (1452)
T ss_pred             CCCCcHHHHHHHHHHHHHHhcCCeEEEEECCCccccChHHhC------CceEEEecceEEee---eecCCC---Cc--cc
Confidence             00                0156888888873  44433222      56788899999953   222221   11  13


Q ss_pred             ccccc-cceEEEECCCCCcCCCCceeeEEEeCCccccccccCcchhhhcccCCceecCceEEEcCCCeEEEeccccccee
Q 014065          336 VGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELIN  414 (431)
Q Consensus       336 ~G~~~-~~~~~i~d~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~gR~~d~i~  414 (431)
                      .|.|+ ++++++.+.+.... .+..|||++++       .++++.|++. .+||+         +||+|+|.||++|+||
T Consensus       802 ~G~PlpgvEvKI~~~~E~~~-~~~~GEIlvr~-------~kdpe~T~e~-~~gW~---------~dG~L~IidRkKdlik  863 (1452)
T PTZ00297        802 DGTPAPSLQVDLEPFDEPSD-GAGIGQLVLAK-------KGEPRRTLPI-AAQWK---------RDRTLRLLGPPLGILL  863 (1452)
T ss_pred             CCeecCceEEEEcccccccC-CCCCCeEEEEE-------CCChHHHHHh-hCcCc---------cCCeEEEEeccccceE
Confidence            49999 89999987321111 13469999964       4778887763 35664         7999999999999999


Q ss_pred             -cCCeeccccceecc
Q 014065          415 -RGGNLHESISLFLA  428 (431)
Q Consensus       415 -~~G~~i~~~~iE~a  428 (431)
                       .+|++|+|+.||.+
T Consensus       864 ls~GEyVaP~~IE~~  878 (1452)
T PTZ00297        864 PVAYEYVIAAELERI  878 (1452)
T ss_pred             CCCCcEEcHHHHHHH
Confidence             79999999999975

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=5.2e-36  Score=278.36  Aligned_cols=243  Identities=26%  Similarity=0.392  Sum_probs=200.3

Q ss_pred             cCCCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeC
Q 014065          155 KLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLP  234 (431)
Q Consensus       155 ~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~  234 (431)
                      .....++++++++|||||||.||+|.++|.++..........+  ...++++..+|++|.+++.. ++.++..|+++++.
T Consensus        29 ~~~~~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~--~~~~~~~~~~p~~~~~g~~~-~~~~l~~g~~~v~~  105 (358)
T PRK07824         29 VGEPIDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDRL--GGPGQWLLALPAHHIAGLQV-LVRSVIAGSEPVEL  105 (358)
T ss_pred             cCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhcc--CCCCeEEEECChHHHHHHHH-HHHHHHcCCeEEec
Confidence            3345578999999999999999999999999988777655543  35578899999999999876 77888889888773


Q ss_pred             C-CCCCChhhHHHHHHHhc--ceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHhCCceeccc
Q 014065          235 A-AGRFSASTFWQDMIKYN--ATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAY  311 (431)
Q Consensus       235 ~-~~~~~~~~~~~~i~~~~--~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~i~~~y  311 (431)
                      . ...+++..+++.+++++  .++...+|..+..++.....  ..+++++|.+++||++++++..+++.+ +++++++.|
T Consensus       106 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~~--~~~~~~l~~i~~gG~~l~~~~~~~~~~-~~~~v~~~Y  182 (358)
T PRK07824        106 DVSAGFDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPAA--TAALAELDAVLVGGGPAPAPVLDAAAA-AGINVVRTY  182 (358)
T ss_pred             CcCCCcCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCccc--cCCcccceEEEECCCCCCHHHHHHHHh-cCCcEEecc
Confidence            2 22578999999999998  56677788888777664432  234789999999999999999999875 599999999


Q ss_pred             CcccccCcccCCCCCCCCCCCCCCccccc-cceEEEECCCCCcCCCCceeeEEEeCCccccccccCcchhhhcccCCcee
Q 014065          312 AMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFH  390 (431)
Q Consensus       312 g~tE~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~  390 (431)
                      |+||++..+.             ..|+|+ ++++++.|           |||+++|+.++.||+++++... ...+|||+
T Consensus       183 G~TE~~~~~~-------------~~G~~~~g~~v~i~~-----------Gei~v~g~~~~~gY~~~~~~~~-~~~~g~~~  237 (358)
T PRK07824        183 GMSETSGGCV-------------YDGVPLDGVRVRVED-----------GRIALGGPTLAKGYRNPVDPDP-FAEPGWFR  237 (358)
T ss_pred             cCCccCCCcC-------------cCceeCCCCEEEecC-----------CEEEEecCccccccCCCccccc-ccCCCcee
Confidence            9999875432             247788 78888854           9999999999999998876432 12468999


Q ss_pred             cCceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          391 TGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       391 TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      |||+|++ ++|.+++.||.||+||.+|++|+|.|||.+.
T Consensus       238 TGDl~~~-~~g~l~i~GR~~d~i~~~G~~v~p~eIE~~l  275 (358)
T PRK07824        238 TDDLGAL-DDGVLTVLGRADDAISTGGLTVLPQVVEAAL  275 (358)
T ss_pred             cccEEEE-eCCEEEEEeccCCeEEECCEEECHHHHHHHH
Confidence            9999999 8999999999999999999999999999863

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=100.00  E-value=1.2e-33  Score=267.72  Aligned_cols=250  Identities=16%  Similarity=0.116  Sum_probs=194.5

Q ss_pred             CCCCeEEEEeccCCCCCCCeeeechHHHHHHHHH---HHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCC
Q 014065          159 DPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSN---IKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPA  235 (431)
Q Consensus       159 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~---~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~  235 (431)
                      ..++++.+++||||||.||++.++|.++..+...   .....++.++|++++..++.+..+.+...+.+...|++++..+
T Consensus        73 ~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  152 (422)
T TIGR02155        73 PREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPIS  152 (422)
T ss_pred             ChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecC
Confidence            4567888999999999999999999998765333   3344688899998887665444443333566778898888765


Q ss_pred             CCCCChhhHHHHHHHhcceeeecchHHHHHHHhcccCCC-CCCCCCccEEEeccCCCcHHHHHHHHHHhCCceecccCcc
Q 014065          236 AGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKP-EPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMT  314 (431)
Q Consensus       236 ~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~-~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~i~~~yg~t  314 (431)
                        ..++..+++.|++++++++.++|+.+..+++...... .....++|.++++|+++++++.+.+++.||+++++.||+|
T Consensus       153 --~~~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~~~~~~~~~lr~i~~~ge~l~~~~~~~i~~~~g~~v~~~YG~t  230 (422)
T TIGR02155       153 --GGQTEKQVQLIQDFKPDIIMVTPSYMLNLLEELKRMGIDPAQTSLQVGIFGAEPWTNAMRKEIEARLGMKATDIYGLS  230 (422)
T ss_pred             --CCCHHHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHcCCCcccCceEEEEEeCCcCCHHHHHHHHHHhCCceEecccch
Confidence              3467899999999999999999999999987654322 1223589999999999999999999999999999999999


Q ss_pred             cccC-cccCCCCCCCCCCCCCCccccc---cceEEEEC-CCCCcCCCCceeeEEEeCCccccccccCcchhhhcccCCce
Q 014065          315 EATH-LMSSNPLPEDGPHKPGSVGRPV---GQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWF  389 (431)
Q Consensus       315 E~~~-~~~~~~~~~~~~~~~~~~G~~~---~~~~~i~d-~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~  389 (431)
                      |+++ .+...+. .   .   ..|.++   ...++|+| ++|++++.|+.|||++++.            +...+..+||
T Consensus       231 E~~~~~~~~~~~-~---~---~~g~~~~~~~~~~eivd~~~g~~v~~Ge~Gelvvt~~------------~~~~~p~~ry  291 (422)
T TIGR02155       231 EVIGPGVAMECV-E---T---QDGLHIWEDHFYPEIIDPHTGEVLPDGEEGELVFTTL------------TKEALPVIRY  291 (422)
T ss_pred             hhcCCceeeccc-c---c---CCCceEecCeeEEEEECCCCCCCCCCCCeeEEEEecC------------CccccceeeE
Confidence            9853 2222111 0   0   123333   36778999 5799999999999999873            2344556899


Q ss_pred             ecCceEEEcCC-C-----eEEEecccccceecCCeeccccceeccc
Q 014065          390 HTGDIGYFDSD-G-----YLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       390 ~TGD~~~~~~~-g-----~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      +|||+++++++ |     .+++.||.+|+|+++|.+|+|.+||.+.
T Consensus       292 ~TGDl~~~~~~~Gr~~~~~~~i~GR~~d~i~~~G~~v~p~eie~~l  337 (422)
T TIGR02155       292 RTRDLTRLLPGTARTMRRMDRITGRSDDMLIIRGVNVFPTQLEEVI  337 (422)
T ss_pred             EcCcEEEEECCCCCcccccccccCccCCeEEECCEEECHHHHHHHH
Confidence            99999999876 4     5789999999999999999999999763

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family

Probab=99.98  E-value=3.5e-31  Score=244.59  Aligned_cols=219  Identities=21%  Similarity=0.171  Sum_probs=173.0

Q ss_pred             CCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCC--CCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCCCCC
Q 014065          161 SDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTE--SDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGR  238 (431)
Q Consensus       161 ~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~--~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~  238 (431)
                      +..++++|||||||.||+|.++|.++...+..+...+++..  .+++++.+|++|.+++...++.++..|+++++.+  .
T Consensus        95 ~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~~~--~  172 (386)
T TIGR02372        95 PTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKILGERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQLA--A  172 (386)
T ss_pred             CCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHhCcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEecC--C
Confidence            55789999999999999999999999988887777777644  4679999999999998777888999999999877  6


Q ss_pred             CChhhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHhCC-ceecccCccccc
Q 014065          239 FSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGA-PVLEAYAMTEAT  317 (431)
Q Consensus       239 ~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~-~i~~~yg~tE~~  317 (431)
                      +++..+++.++.+  +++.++|++++.+.+..     .++++++. ++||+++++++++.+++. +. .+++.||+||++
T Consensus       173 ~~~~~~l~~i~~~--t~~~~~P~~l~~l~~~~-----~~l~slr~-i~gGa~l~~~l~~~~~~~-g~~~v~~~YG~TEt~  243 (386)
T TIGR02372       173 APASGIMRHARPG--DLIVGTPFIWEQLADLD-----YRLPGVVG-VSSGAPSTAATWRCLLAA-GLARLLEVYGATETG  243 (386)
T ss_pred             CChHHHHHhhccC--CEEEECcHHHHHHHhhC-----cCCCccee-EecCCCCCHHHHHHHHHh-cccchhheecccccc
Confidence            7888888877653  78999999999997653     23567775 678999999999999875 64 699999999998


Q ss_pred             CcccCCCCCCCCCCCCCCccccc-cceEEEECCCCCcCCCCceeeEEEeCCccccccccCcchhhhcccCCceecCceEE
Q 014065          318 HLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGY  396 (431)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~  396 (431)
                      ++.....        ++..|+++ +.++.+ + ++.        +   .|+                  ..|++|||+++
T Consensus       244 ~i~~~~~--------~~~~~~~~p~~~~~~-~-~~~--------~---~g~------------------~~~~~tgD~g~  284 (386)
T TIGR02372       244 GIGLREA--------PDDPFRLLPDLACFA-D-TLS--------S---AGL------------------ARRLDLQDRLA  284 (386)
T ss_pred             ccccccC--------CCCCcccCCCccccC-C-Ccc--------C---CCc------------------cceeecCceEE
Confidence            7654321        12244555 333322 1 110        0   011                  12688999999


Q ss_pred             EcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          397 FDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       397 ~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      +|++|++++.||.||+||++|++|+|.+||.+.
T Consensus       285 ~d~~G~l~i~GR~dd~Ik~~G~~V~p~eIE~~l  317 (386)
T TIGR02372       285 WDKDGGFTILGRKDEILQVGGVNVSPGHVRDIL  317 (386)
T ss_pred             EcCCCcEEEecccCCEEEECCEEEcHHHHHHHH
Confidence            999999999999999999999999999999863

Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=99.97  E-value=3.9e-29  Score=239.20  Aligned_cols=423  Identities=18%  Similarity=0.205  Sum_probs=296.3

Q ss_pred             ccHHHHHHHHHHhcCCcceEEecC-----CCcccHHHHHHHHHHHHHHHHHc-CCCCCCEEEEECCCcHHHHHHHHHHHH
Q 014065            4 VTLIGLLNQVIDQFSSKRALSVSG-----KFDLTYSRIHELVERAASRLVAA-GINAGDVVALTFPNTVEFVIMFLAVIR   77 (431)
Q Consensus         4 ~tl~~~l~~~a~~~p~~~a~~~~~-----~~~~Ty~el~~~~~~~a~~L~~~-gl~~gd~V~i~~~n~~~~~~~~lA~~~   77 (431)
                      .++.|+|+++++.+|+++|+..-+     +.++||++|..++.+++..|..+ -+++||.|++++++++|++++++||+.
T Consensus       770 ~~ile~Lq~R~a~tp~~~a~~~~n~~~~~~~~~Tw~~f~krva~i~~~l~~k~~lk~Gd~V~Lmy~~sie~vaa~~~Cly  849 (1363)
T KOG3628|consen  770 LTILEILQWRAAKTPDHIAFTTLNARGATKKTLTWAQFHKRVARIAEYLQDKGHLKAGDHVVLMYPPSIEFVAAIYACLY  849 (1363)
T ss_pred             HHHHHHHHHHhhcCCCceEEEEeccCCcccceeEHHHHHHHHHHHHHHHHhcccCCCCCeEEEEcCChHHHHHHHHHHHh
Confidence            478999999999999999998643     37999999999999999999986 589999999999999999999999999


Q ss_pred             hCcEEEecCCCCCH------HHHHHHHhcCCceEEEecCCchhHHHH--HHHhcCcccc--cccccccchhhhhhhcccc
Q 014065           78 ARATAAPLNAAYTP------DEFEFYLSDSESKLLLTPAEGNAAAQA--AASKLNISHA--TATLLDADSELTLSLAHSE  147 (431)
Q Consensus        78 ~G~~~v~l~~~~~~------~~l~~~l~~~~~~~ii~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  147 (431)
                      +|++++|++|....      ..+..+++.+++..|+++......+..  +.........  .....+.............
T Consensus       850 ~GliPIpv~p~~~s~l~~~l~~~~~ii~~~kv~ailv~~~v~~lLrsr~~s~~~~~s~~p~i~~~~~~~~t~~k~~~~~~  929 (1363)
T KOG3628|consen  850 LGLIPIPVPPPHASNLIEDLPTFRMIIKVYKVAAILVDQKVLKLLRSREASAHVDQSAIPLILVLPKLPETIRKRKKNIK  929 (1363)
T ss_pred             cCeeeeccCCccHHhhhhhhHHHHHHHHHhhhheEEecHHHHHHHhhhhHHHHhhhhcchhhhcccccchhhhhhhhhhh
Confidence            99999999887643      368899999999999999874433321  1111111100  0001111100000000001


Q ss_pred             ccccccccCCCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhc
Q 014065          148 SDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAA  227 (431)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~  227 (431)
                      ......++-....+.+|++-+.--++|.--++.++|.++++.++.......+.++.-++...+.+...|+..+.+..++.
T Consensus       930 k~~~~~~~g~~~k~~~a~v~~~~~~dg~l~~~~msHsslla~Ck~iKe~~~l~~~rpl~~~~~~~sGlgf~~wcLlgVys 1009 (1363)
T KOG3628|consen  930 KLNTPTPPGLNNKETPALVWFNVSTDGMLIGVKMSHSSLLAFCKIIKETCQLYKSRPLLGCSSPYSGLGFNHWCLLGVYS 1009 (1363)
T ss_pred             ccCCCCCccccCCCceEEEEEEecCCcceeeeeccHHHHHHHHHHHHHHHccccCCceEEEecCccchhHHHHHHHHHHc
Confidence            11111222234567889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEEeCCCCCC--ChhhHHHHHHHhcceeeecchHHHHHHHhcccCCCC------CCCCCccEEEeccCCCcHHHHHHH
Q 014065          228 GAAVTLPAAGRF--SASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPE------PVYPKLRFIRSCSASLAPVILSRL  299 (431)
Q Consensus       228 G~~~~~~~~~~~--~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~------~~~~~l~~i~~~g~~~~~~~~~~~  299 (431)
                      |.+.++.++..+  ++..++..++++++.-++.+-..+..+.+.......      .+.++ ..+...-+.-...+..-+
T Consensus      1010 Gh~T~Li~p~~l~nnpsLll~~i~~~kvkDt~~~~~tln~c~~~l~t~~enl~~~gnn~s~-s~vv~~~~RPr~ali~sf 1088 (1363)
T KOG3628|consen 1010 GHPTLLISPMDLENNPSLLLQIISQYKVKDTYPTYSTLNLCQKGLETSVENLSKRGNNTSS-SIVVPAEERPRIALIASF 1088 (1363)
T ss_pred             CCceeecCHHHhhcCHHHHHHHHhcccccccchhHHHHHHHHhccccccchhhhhhccccc-ceeeecCCccHHHHHHHH
Confidence            999877664333  889999999999999999988888887765543211      11222 223333444445566666


Q ss_pred             HHHh---CCc---eecccC-------------ccccc-CcccCCCCCCCC-----CCCC-----CCccccc-cceEEEEC
Q 014065          300 EEAF---GAP---VLEAYA-------------MTEAT-HLMSSNPLPEDG-----PHKP-----GSVGRPV-GQEIAILD  348 (431)
Q Consensus       300 ~~~~---~~~---i~~~yg-------------~tE~~-~~~~~~~~~~~~-----~~~~-----~~~G~~~-~~~~~i~d  348 (431)
                      .+.|   |..   +--.|+             ..|-. ...-.+..+++.     ...+     -..|... +.++.|++
T Consensus      1089 ~klfa~igLsp~avStsys~r~Np~Ic~r~~sg~~Pt~~y~D~raLR~grV~~ve~~ap~~l~L~dSG~~~~~~~i~Ivn 1168 (1363)
T KOG3628|consen 1089 KKLFAAIGLSPRAVSTSYSSRVNPFICLRSYSGPEPTTVYLDARALREGRVRLVEVGAPHSLLLYDSGKLPVYTDIAIVN 1168 (1363)
T ss_pred             HHHHHHcCCChhhhcccccccCChHhhhccccCCCCcceeechhhhhccceeeeecCCCCccccccCCcccccceeEEeC
Confidence            6555   211   112222             22211 111111111100     0000     1125554 78999999


Q ss_pred             CC-CCcCCCCceeeEEEeCCccccccccCcc-hhhhccc----------CCceecCceEEEc------CC----CeEEEe
Q 014065          349 EI-GVPQEGGAKGEVCIRGPNVTKGYKNNPE-ANKSAFL----------FGWFHTGDIGYFD------SD----GYLHLV  406 (431)
Q Consensus       349 ~~-~~~~~~~~~Gel~v~~~~~~~gy~~~~~-~~~~~~~----------~g~~~TGD~~~~~------~~----g~l~~~  406 (431)
                      ++ ..+|.+|+.||||+.+.+-+.+|+...+ .....|.          .+|-||||+|++.      +.    ..+|++
T Consensus      1169 PEtk~pc~dge~GEIW~~S~hnA~~~~~~~d~~~~~~fn~rl~~g~~~~~sy~RTG~LGFl~~t~~t~~~~e~~~~LyVl 1248 (1363)
T KOG3628|consen 1169 PETKGPCRDGELGEIWVNSAHNASCSFTIGDELRSNHFNARLSSGDLLGKSYARTGDLGFLRRTSLTDANVERHDLLYVL 1248 (1363)
T ss_pred             CccccccccCCcceEEeccccccccccccCchhhhhhhhhhccccccccccceeeeeeeeeeeeecccccceeeeeEEEe
Confidence            55 7899999999999999998888765321 1111121          1499999999973      22    359999


Q ss_pred             cccccceecCCeeccccceec
Q 014065          407 GRIKELINRGGNLHESISLFL  427 (431)
Q Consensus       407 gR~~d~i~~~G~~i~~~~iE~  427 (431)
                      |-.++.+..+|.+++|.+||.
T Consensus      1249 G~i~EtlEl~GL~h~p~DIE~ 1269 (1363)
T KOG3628|consen 1249 GAIDETLELNGLRHFPSDIET 1269 (1363)
T ss_pred             ecccceeeecCcccCcchHHH
Confidence            999999999999999999995

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=99.96  E-value=2.9e-28  Score=230.91  Aligned_cols=250  Identities=20%  Similarity=0.133  Sum_probs=186.5

Q ss_pred             CCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHH---hcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeC
Q 014065          158 NDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSV---YKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLP  234 (431)
Q Consensus       158 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~  234 (431)
                      ...++++.+.+||||||.||++.++|..+..........   .++.++|+++...+..+..+......++...|++++..
T Consensus        83 ~~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~  162 (445)
T TIGR03335        83 ADWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPE  162 (445)
T ss_pred             CCHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcC
Confidence            345688899999999999999999999987666544433   48889999999988877666555456677888877543


Q ss_pred             CCCCCChhhHHHHHHHhcceeeecchHHHHHHHhcccCCC-CCCCCCccEEEeccCCCcHHHHHHHHHHhCCceecccCc
Q 014065          235 AAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKP-EPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAM  313 (431)
Q Consensus       235 ~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~-~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~i~~~yg~  313 (431)
                      .    .....++.|++++++.+.++|+.+..+++...... .....++|.+++||++++++..+.+.+.||+++++.||+
T Consensus       163 ~----~~~~~~~~i~~~~~t~l~~~ps~ll~La~~~~~~g~~~~~~~lr~ii~gGE~l~~~~r~~ie~~~g~~v~~~YG~  238 (445)
T TIGR03335       163 G----KCTFPIRIIESYRPTGIVASVFKLLRLARRMKAEGIDPAESSIRRLVVGGESFADESRNYVEELWGCEVYNTYGS  238 (445)
T ss_pred             C----chhHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCcceEEEEcCCCCCHHHHHHHHHHhCCcEEecCCh
Confidence            3    23456899999999999999999888876544322 112468999999999999999999999999999999999


Q ss_pred             ccccCcccCCCCCCCCCCCCCCccccc---cceEEEECCC-CCcCCCCceeeEEEeCCccccccccCcchhhhcccCCce
Q 014065          314 TEATHLMSSNPLPEDGPHKPGSVGRPV---GQEIAILDEI-GVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWF  389 (431)
Q Consensus       314 tE~~~~~~~~~~~~~~~~~~~~~G~~~---~~~~~i~d~~-~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~  389 (431)
                      ||++.. ..+..         ..|..+   ...++|+|++ +.+++.|+.|||++++-....        ....+.---|
T Consensus       239 TE~~~~-~~c~~---------~~g~h~~~d~~~vEIvDp~~~~~vp~Ge~GELvvT~L~~~~--------~r~~~PliRY  300 (445)
T TIGR03335       239 TEGTMC-GECQA---------VAGLHVPEDLVHLDVYDPRHQRFLPDGECGRIVLTTLLKPG--------ERCGSLLINY  300 (445)
T ss_pred             hhhhhe-EEecC---------CCCccccCCceEEEEEcCCCCCCCcCCCceEEEEEecCCCC--------ccCCceEEEe
Confidence            998632 22110         123443   2678999976 567899999999998842110        0000111139


Q ss_pred             ecCceEEEcC-C----C----eEEEecccccceecCCeeccccceeccc
Q 014065          390 HTGDIGYFDS-D----G----YLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       390 ~TGD~~~~~~-~----g----~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      +|||++++.. +    |    .+...||.||+++++|.+++|.+||.|.
T Consensus       301 rtgD~~~~~~~~~C~CGr~~~r~~~~gR~dd~~~~~g~~~~p~~ie~~l  349 (445)
T TIGR03335       301 DTEDTTVVISRDRCPCGRTHMRILNPEREAETIWISGVPFNRVDVERAV  349 (445)
T ss_pred             ecCceEEEecCCCCCCCCCcceeCCCcccCceEEECCEEeCHHHHHHHH
Confidence            9999999732 2    2    2445799999999999999999999875

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>TIGR03089 conserved hypothetical protein TIGR03089

Probab=99.96  E-value=9.8e-28  Score=205.38  Aligned_cols=209  Identities=19%  Similarity=0.196  Sum_probs=158.5

Q ss_pred             HHHHHHhcCCcceEEec-C----CCcccHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCcHHHHHHHHHHHHhCcEEE
Q 014065           10 LNQVIDQFSSKRALSVS-G----KFDLTYSRIHELVERAASRLVA-AGINAGDVVALTFPNTVEFVIMFLAVIRARATAA   83 (431)
Q Consensus        10 l~~~a~~~p~~~a~~~~-~----~~~~Ty~el~~~~~~~a~~L~~-~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v   83 (431)
                      |...++.+|+++|+++. +    ++++||+|+.++++++|+.|++ .|+++||+|+++++|+++++++++||+++|++++
T Consensus         2 ~~~~~~~~p~~~al~~~~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~Gv~~GdrV~i~~~n~~~~~~~~~a~~~~G~v~v   81 (227)
T TIGR03089         2 LSPLLAADPASPRLTFYDDATGERVELSAATLANWVAKTANLLQDELDAEPGSRVALDLPAHWQTAVWLLAAWSTGVEVV   81 (227)
T ss_pred             hhhhhhhCCCCcEEEEEcCCCCeeEEEEHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEE
Confidence            56788899999999853 2    2369999999999999999998 6999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCcccccccc-----cc------cchhhhhhhccccccccc
Q 014065           84 PLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATL-----LD------ADSELTLSLAHSESDTNA  152 (431)
Q Consensus        84 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~-----~~------~~~~~~~~~~~~~~~~~~  152 (431)
                      |++             .+++++++++++....... .      .....+     ..      ......+...........
T Consensus        82 p~n-------------~s~a~~~v~~~~~~~~~~~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (227)
T TIGR03089        82 LAG-------------DPDADVVVTGPDRLAAAAG-S------GEVVALSLDPLGRRVAGELPPGVIDFAPEVRVHGDQF  141 (227)
T ss_pred             eCC-------------CCCCCEEEeCcchhhhccc-C------CceEEEeccccccCCCCCCCCcccchhhhhhccCCCC
Confidence            995             6789999998876555321 0      011100     00      000011111010000111


Q ss_pred             cccCCCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEE
Q 014065          153 ISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVT  232 (431)
Q Consensus       153 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~  232 (431)
                      .+.....++|++.++||||+         +|.+++.+.    ...++.++|+++ .+|++|.+|+...++.++..|++++
T Consensus       142 ~~~~~~~~~D~a~l~yTsg~---------~~~~~~~~~----~~~~l~~~D~~l-~~Pl~H~~gl~~~~~~~l~~G~t~v  207 (227)
T TIGR03089       142 APYEPPDATAPALVAGGGEW---------TGAELVAAA----RAAGLPPGDRVL-VLAWTDLEDFLATLLAPLAAGGSLV  207 (227)
T ss_pred             CCCCCCCCCcceeeeccccc---------cHHHHHHHH----hhcCCCCCCeEE-ecCCCchHHHHHHHHHHhccCceEE
Confidence            11113456899999999985         566655443    566789999999 9999999999888999999999999


Q ss_pred             eCCCCCCChhhHHHHHHHhcce
Q 014065          233 LPAAGRFSASTFWQDMIKYNAT  254 (431)
Q Consensus       233 ~~~~~~~~~~~~~~~i~~~~~t  254 (431)
                      +.+  +|++..+++.|+++|||
T Consensus       208 ~~~--rFd~~~~l~~i~~~~vT  227 (227)
T TIGR03089       208 LVT--HPDPARLDQIAETERVT  227 (227)
T ss_pred             Eec--CCCHHHHHHHHHhhcCC
Confidence            987  89999999999999986

This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501.

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=99.93  E-value=1.8e-24  Score=194.70  Aligned_cols=253  Identities=17%  Similarity=0.151  Sum_probs=191.3

Q ss_pred             ccCCCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHH---HhcCCCCCeEEEecChh-hHHHHHHHHHHHHhcCC
Q 014065          154 SKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKS---VYKLTESDSTVIVLPLF-HVHGMLAGLLSSFAAGA  229 (431)
Q Consensus       154 ~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~---~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~l~~G~  229 (431)
                      .......++...+-.||||||.|+.+.++...+..+...+..   ..+...+|++....... +..|+.. ..++-..|+
T Consensus        83 ~~~~~~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~-~~ga~rig~  161 (438)
T COG1541          83 GDFAVPKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGL-HYGAERIGA  161 (438)
T ss_pred             ccccccccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchh-HHHHHhhCE
Confidence            344556677788999999999999999999987666555444   44778888887765532 1222222 444555555


Q ss_pred             EEEeCCCCCCChhhHHHHHHHhcceeeecchHHHHHHHhcccCCC-CCCCCCccEEEeccCCCcHHHHHHHHHHhCCcee
Q 014065          230 AVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKP-EPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVL  308 (431)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~-~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~i~  308 (431)
                      +++=..  .-+.+..++.++.++++++.++|+.+..+++...+.. ...-.++|.+++|+|+++++..+.+.+.||+..+
T Consensus       162 ~vip~~--~g~~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G~~~~~~~lk~~i~gaE~~see~R~~ie~~~g~~~~  239 (438)
T COG1541         162 TVIPIS--GGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGIDPDKLSLKKGIFGAEPWSEEMRKVIENRFGCKAF  239 (438)
T ss_pred             EEEccC--CccHHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcCCChhhcceeEEEEecccCCHHHHHHHHHHhCCcee
Confidence            554332  3478899999999999999999999999999887763 2335789999999999999999999999999999


Q ss_pred             cccCcccccCcccCCCCCCCCCCCCCCccccc---cceEEEEC-CCCCcCCCCceeeEEEeCCccccccccCcchhhhcc
Q 014065          309 EAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV---GQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAF  384 (431)
Q Consensus       309 ~~yg~tE~~~~~~~~~~~~~~~~~~~~~G~~~---~~~~~i~d-~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~  384 (431)
                      +.||+||..+.....+...        -|-.+   ...++++| +.|+.+++|+.|||+++.-            ++..+
T Consensus       240 diYGltE~~g~g~~eC~~~--------~glhi~eD~~~~Ei~dP~t~e~l~dge~GelV~T~L------------~~~~~  299 (438)
T COG1541         240 DIYGLTEGFGPGAGECTER--------NGLHIWEDHFIFEIVDPETGEQLPDGERGELVITTL------------TKEGM  299 (438)
T ss_pred             eccccccccCCcccccccc--------cCCCcchhhceeeeecCCcCccCCCCCeeEEEEEec------------cccCc
Confidence            9999999976642211111        13333   36789999 5599999999999999872            12222


Q ss_pred             cCCceecCceEEEcCCC---------eEEEecccccceecCCeeccccceeccc
Q 014065          385 LFGWFHTGDIGYFDSDG---------YLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       385 ~~g~~~TGD~~~~~~~g---------~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      +---|+|||++.+.++-         .-.+.||.||++++.|.+|+|.+||.+.
T Consensus       300 PlIRYrtgDit~i~~~~C~cGr~~~ri~~I~GR~dD~l~~~G~~vfp~~ie~~l  353 (438)
T COG1541         300 PLIRYRTGDITVILSDPCGCGRTHRRIERIEGRSDDMLIVRGVNVFPSQIERVL  353 (438)
T ss_pred             ceEEEEcCCeeEecccCCCCCCccccccccCcccccEEEECCEEeCHHHHHHHH
Confidence            22359999999997642         2569999999999999999999999874

>KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.90  E-value=1.8e-22  Score=199.49  Aligned_cols=417  Identities=19%  Similarity=0.188  Sum_probs=257.3

Q ss_pred             cHHHHHHHHHHhcCCcceEEec---C----CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHH
Q 014065            5 TLIGLLNQVIDQFSSKRALSVS---G----KFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIR   77 (431)
Q Consensus         5 tl~~~l~~~a~~~p~~~a~~~~---~----~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~   77 (431)
                      ++...+.+.+...|.+.+..+-   .    -..+||++.....+.+++.|...|..+|+.|++++..+.++++..++.++
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~i~~~t~r~~~~~~n~~~q~l~~~~~~~~~~v~i~~~~~~d~~v~v~~~~~  116 (1032)
T KOG1178|consen   37 TLEDSFRRELAEAPENTGHVIIPTASESGIIDSFTYRLIRLLSNIIAQFLVSLGSLRGTTVAIYMLPSVDLVVSVFAVLA  116 (1032)
T ss_pred             chhhHHHHHHhhcccCCCceEeecccccccccchhhhhhhcccchhHHHhhhcccccCceEEEeccCcCCeeeeeeehhh
Confidence            4556778888888888887642   1    15899999999999999999999999999999999999999999999999


Q ss_pred             hCcEEEecCCCCCHHHHHHHHhcCCceEEEec-CCchhHHHHHHHhc-C-cccccccccccchhhhhhhccccccccccc
Q 014065           78 ARATAAPLNAAYTPDEFEFYLSDSESKLLLTP-AEGNAAAQAAASKL-N-ISHATATLLDADSELTLSLAHSESDTNAIS  154 (431)
Q Consensus        78 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~-~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (431)
                      +|..+++++|.++.-++...+.+. +...... .+............ . .+...+  .....  .+....  .......
T Consensus       117 ~g~~~~~idp~~~~~e~~~~~~~i-a~~~~s~~~~i~~~l~i~~~~~~~~~~~~sv--~~~~~--~f~~~~--~~~~~r~  189 (1032)
T KOG1178|consen  117 AGLTFLPIDPSWPNSELAGYLMRI-AHFLTSVELEIVRRLNIIDILLNSLFPKLSV--ETIAD--SFQMVL--HNEDTRE  189 (1032)
T ss_pred             cceEEEEecCCCcccccchHHHhh-hhhheeccceehhhhhhHHHHhhccccccch--hhccc--hhhhhh--ccCCCcc
Confidence            999999999999911111111111 0000000 11111110000000 0 000000  00000  001000  1111111


Q ss_pred             cCCCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeC
Q 014065          155 KLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLP  234 (431)
Q Consensus       155 ~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~  234 (431)
                      -....++..+.+.||||+||.||+|..+|..++....+....+....++++-.....+............|..|..+..|
T Consensus       190 ~~~~~~ds~~~l~~tSgs~G~pk~v~~~~~sl~~~fdw~~~~f~~t~s~~~~~~~~~~~~d~i~~~~~~~L~~~~~l~~p  269 (1032)
T KOG1178|consen  190 IRVGGNDSTALLSFTSGSTGVPKGVAGTHFSLANAFDWMFTTFPPTGSDRFTFKTSVYFDDTIQKFIGALLFNGNNLLVP  269 (1032)
T ss_pred             eeeecccccceEeecccccccccccchhHHHHHhhhhhccccCCcCccchhhhhheeecccchHHHHhhHhhcCceeecc
Confidence            22344677889999999999999999999999999988888888877776522222323323233233445555555554


Q ss_pred             CCCCC-ChhhHHHHHHHhcceeeecchHHHHHHHhcccCC------------CCCCCCCccEEEeccCCCcHHHHHHHHH
Q 014065          235 AAGRF-SASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAK------------PEPVYPKLRFIRSCSASLAPVILSRLEE  301 (431)
Q Consensus       235 ~~~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~------------~~~~~~~l~~i~~~g~~~~~~~~~~~~~  301 (431)
                      .+..- .+..+.+.+++++++..+.+|++.++++......            .....+.++....+|++..-.++..+..
T Consensus       270 ~~~~~~~~~~l~~~le~y~i~~~~~~~a~~~~l~~~~~~~~~~l~~~~~~~dl~~~~~~Lkl~~~~~ep~~v~l~~s~~~  349 (1032)
T KOG1178|consen  270 TATIKDTPGQLASTLERYGITVSHLLPAMCQLLLAILTTSLPLLEHAFSLSDLLTKRSCLKLVVLGGEPLLVSLYTSTFD  349 (1032)
T ss_pred             cccCccchhhHHHHHHhhhheeeeechhhhhhhhhhcCcchhhhhhhhhcccccccchhheeeeecCCccchhhhhhhhh
Confidence            42111 3789999999999999999999988876544321            0111358899999999999999986665


Q ss_pred             HhCCc-eecccCcccccCcccCCCCCCCC-CCCCCCccccc------c--ceEEEECCCCCcCCCCceeeE----EEeCC
Q 014065          302 AFGAP-VLEAYAMTEATHLMSSNPLPEDG-PHKPGSVGRPV------G--QEIAILDEIGVPQEGGAKGEV----CIRGP  367 (431)
Q Consensus       302 ~~~~~-i~~~yg~tE~~~~~~~~~~~~~~-~~~~~~~G~~~------~--~~~~i~d~~~~~~~~~~~Gel----~v~~~  367 (431)
                      .+-.. ...-|+.++..+........... .....-++.+.      +  ....+....|.+.+.+..+..    ...++
T Consensus       350 ~~~~~~~~~~y~s~~~~~~~s~~~~~~s~~ll~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~  429 (1032)
T KOG1178|consen  350 LLAEIFFGLPYLSTDPTGLVSYDDFSPSKVLLTNENVYSVPKFDSIIGSLTVLESLYRAGGEGEGGVGKGCLGAEQNLSS  429 (1032)
T ss_pred             cccceeeeecccCCCCccceeHHhhCcccceecceeEEeccchhhccCCCcceeeeeccCcccCCcccceeecccccccc
Confidence            55222 22338888877766654432110 01111111111      1  223333333444444332222    22334


Q ss_pred             ccccccccCcchhhhc--cc----CCceecCceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          368 NVTKGYKNNPEANKSA--FL----FGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       368 ~~~~gy~~~~~~~~~~--~~----~g~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      .+..||. .++.....  +.    +.+|+|||.|+..++|.+.+.||.|++||.+|.++...||+++-
T Consensus       430 ~~~~g~~-~~~~~~~~~~~~d~~~~r~y~tgD~gr~l~ng~l~~~GR~d~qIK~rG~Ri~L~ei~t~v  496 (1032)
T KOG1178|consen  430 WVVDGYS-TPENFLPNFLTVDGVKARIYRTGDNGRSLKNGGLEISGRADRQIKDRGVRIELGELNTVV  496 (1032)
T ss_pred             eeecccc-chhhcCCcccccccchhhcccccccceeecCCCEEEEEeccceEEEccEEEehhhhchhh
Confidence            5555532 22221111  22    35999999999999999999999999999999999999999863

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=99.82  E-value=5.4e-19  Score=170.45  Aligned_cols=411  Identities=15%  Similarity=0.191  Sum_probs=278.5

Q ss_pred             ccHHHHHHHHHHhcCCcceEEecCC----CcccHHHHHHHHHHHHH-HHHHcCCCCCCEEEEECCCc--HHHHHHHHHHH
Q 014065            4 VTLIGLLNQVIDQFSSKRALSVSGK----FDLTYSRIHELVERAAS-RLVAAGINAGDVVALTFPNT--VEFVIMFLAVI   76 (431)
Q Consensus         4 ~tl~~~l~~~a~~~p~~~a~~~~~~----~~~Ty~el~~~~~~~a~-~L~~~gl~~gd~V~i~~~n~--~~~~~~~lA~~   76 (431)
                      ..+..+++.+-..++...|.+.-++    .++||..+..|+.++|+ .|-+-|+.++|+|.++...+  .++++..++|.
T Consensus        94 ~d~~avl~~~~nhs~~~ta~i~id~kgk~~~~twdkl~~rA~k~a~~~l~ksgl~~~~~vvL~Y~~~e~ie~~isl~gc~  173 (1363)
T KOG3628|consen   94 TDIIAVLRYRRNHSATSTAHICIDKKGKATSITWDKLLNRAEKVAHVELNKSGLKPGDRVVLYYRKCEAIEFLISLFGCF  173 (1363)
T ss_pred             cchHHHHHhhccCCCCCceEEEEcCCCceeeeeHHHHHHHHHhhccHHhhccCCCCCcEEEEEEEhhhhhHHhhhhcccc
Confidence            4466777777677888888886442    68999999999999999 56667999999999998775  89999999999


Q ss_pred             HhCcEEEecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCcccccccccccchhhhhhhccccccccccccC
Q 014065           77 RARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKL  156 (431)
Q Consensus        77 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (431)
                      ..|.+.+|+.+..+.+++..+++..+.+++++...............+..+....+...    .+.   -.........+
T Consensus       174 l~g~~~vp~~e~~s~~el~~i~~~~~~~~~l~t~a~~r~~~~~~~~~s~~k~v~~w~t~----~~k---~~~~~~k~~~P  246 (1363)
T KOG3628|consen  174 LLGIVAVPLSELSSSEELKDIVNPTPERVALTTEAGERAFINDNSPVSLAKAVAWWKTN----DFK---GNYTKDKIKKP  246 (1363)
T ss_pred             ccceeeccchhhhhhhhhhcccCCCccceEeehhhhHHHhhhccCcccHHHHHHhhhcc----ccc---ceeehhhccCC
Confidence            99999999999999999999999999999998876554443322111111111111000    000   00011111222


Q ss_pred             CCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHH--------------------HHHhcCCCCCeEEEecChhhHHH
Q 014065          157 TNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNI--------------------KSVYKLTESDSTVIVLPLFHVHG  216 (431)
Q Consensus       157 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~--------------------~~~~~~~~~~~~~~~~p~~~~~~  216 (431)
                      ...-. ..+|-||.+++|.--++..+|+ ++.+.+..                    ...++...++..+..+...-..|
T Consensus       247 ~~~~~-~~~i~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~~~~~~~~~~~~~v~~~~~~~~~l~~~~~s~~lG  324 (1363)
T KOG3628|consen  247 RMQLP-YGYIEFTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPARFAAAFYGCLHAHVFPVPSEDVLLTNLDPSQQLG  324 (1363)
T ss_pred             ceeee-eEEEEEeccchhceeeeEeecc-cccchhhhhhccCcChHHHHHhhhcchhhhccccCcccceeeccCcccccc
Confidence            22223 7899999999999888998888 43332221                    12233455677777777777789


Q ss_pred             HHHHHHHHHhcCCEEEeCCCCC-CChhhHHHHHHHhcceeeecchHHHHHHHhcccCC----------CCCCCCCccEEE
Q 014065          217 MLAGLLSSFAAGAAVTLPAAGR-FSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAK----------PEPVYPKLRFIR  285 (431)
Q Consensus       217 ~~~~~~~~l~~G~~~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~----------~~~~~~~l~~i~  285 (431)
                      ++.+++.+++.|.+.+.++... ..+..+...+.+++++++..-...+..........          ...+++++|.+.
T Consensus       325 lilGV~~alfsg~c~i~~p~~~l~~pG~~~~l~~k~R~~~~ltd~~~Lkq~~~ny~~~p~a~~s~~k~~t~d~sslk~C~  404 (1363)
T KOG3628|consen  325 LILGVLVALFSGYCTIGCPKEVLKPPGLIANLITKYRATWSLTDYAGLKQPVYNYQEDPKATLSFKKYKTPDLSSLKGCM  404 (1363)
T ss_pred             hhhhhhhhhhcCceeecCchhhcCCCcchhhhhccceeEEEeecccccCcccccccCCcccccchhhccCCCccceeeeE
Confidence            9999999999999999887422 36778889999999999887766666554322211          124689999999


Q ss_pred             eccCCCcHHHHHHHHHHh----CCce------------------ecccCcccccCcccCCCCCCCCCC------------
Q 014065          286 SCSASLAPVILSRLEEAF----GAPV------------------LEAYAMTEATHLMSSNPLPEDGPH------------  331 (431)
Q Consensus       286 ~~g~~~~~~~~~~~~~~~----~~~i------------------~~~yg~tE~~~~~~~~~~~~~~~~------------  331 (431)
                      +....+..+...-....+    |...                  ..+=+++|.+......+. .....            
T Consensus       405 Vtc~~vd~~~~~ivs~~wlk~lg~~~~~~~~~p~l~ll~hGgi~is~k~~~~~~~~~~r~p~-~~~~~~~~e~ll~~~~L  483 (1363)
T KOG3628|consen  405 VTCTAVDTEFQEIVSDRWLKPLGETNVKVVDFPILCLLWHGGIPISFKDWMEIGTVSIRRPE-QMADTLPGEGLLSKEAL  483 (1363)
T ss_pred             EeeeecchHHHHHHHHhhcccccCcCcceeechhhhhhhcCceEEEeccchhhhcccccCcc-cccccCccceeeecccc
Confidence            999999988776665554    2210                  111122455444333322 00000            


Q ss_pred             ----------------CCCCccccc--cceEEEECCC-CCcCCCCceeeEEEeCCccccccccCcchhhhcccC------
Q 014065          332 ----------------KPGSVGRPV--GQEIAILDEI-GVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF------  386 (431)
Q Consensus       332 ----------------~~~~~G~~~--~~~~~i~d~~-~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~------  386 (431)
                                      ....+|...  ...+.|++++ ...|..+++|||||.+++...+|+.-+..+...|..      
T Consensus       484 ~~~~V~v~~e~~is~~s~kd~~~i~~g~~t~~vv~~~t~~LC~~~eVGEIwVsS~~~~~~~~al~~~t~~~F~~~~~~s~  563 (1363)
T KOG3628|consen  484 KLNEVEVDTEDDISSLSVKDVLCIMPGDATLAVVNPDTNQLCKTDEVGEIWVSSNSLGKLFYALDKQTENTFKATPVESS  563 (1363)
T ss_pred             ccceEEEcchhhhhhcCccccceecccceEEEEeCCCcccccccCcceeEEEecCCcccceeeccccccceEEeeecccc
Confidence                            000223332  3666677755 788999999999999999999999877666655521      


Q ss_pred             -------CceecCceEEEcCCCeEEEecccccce-ecCCeeccccce
Q 014065          387 -------GWFHTGDIGYFDSDGYLHLVGRIKELI-NRGGNLHESISL  425 (431)
Q Consensus       387 -------g~~~TGD~~~~~~~g~l~~~gR~~d~i-~~~G~~i~~~~i  425 (431)
                             -|++||-+||+.+++ ++++|-.+|.+ -+.|.+++..+|
T Consensus       564 ~~~~~n~~FmRtGLlGFv~~gk-i~vl~~k~d~llq~~~~~h~~d~i  609 (1363)
T KOG3628|consen  564 GKPPSNVPFMRTGLLGFVHNGK-IYVLGLKEDGLLQVSGWRHNADDI  609 (1363)
T ss_pred             CCCCccchhhhhcceeeeeCCe-EEEEEechhhhhhhhhhhhhhhhh
Confidence                   299999999996666 55555555544 478888776654

>TIGR02304 aden_form_hyp probable adenylate-forming enzyme

Probab=99.69  E-value=9.2e-16  Score=142.39  Aligned_cols=226  Identities=15%  Similarity=0.079  Sum_probs=146.2

Q ss_pred             eEEEEeccCCCCCCCeeeechHHHHHHHHHH-HHH--hcCCCCCeEEEecCh-hhHHHHHHHHHHHHhcCCE-EEeCCCC
Q 014065          163 VALFLHTSGTTSRPKGVPLTQNNLAASVSNI-KSV--YKLTESDSTVIVLPL-FHVHGMLAGLLSSFAAGAA-VTLPAAG  237 (431)
Q Consensus       163 ~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~-~~~--~~~~~~~~~~~~~p~-~~~~~~~~~~~~~l~~G~~-~~~~~~~  237 (431)
                      -..+..||||||.|-.+..+........... ...  .++..++++...+.. .+.+       .++..... +-..+- 
T Consensus       101 ~~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~~~g~~~g~r~a~~~~~~~~ly-------~~~~~~~~~~~~~~l-  172 (430)
T TIGR02304       101 NISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVLPDGLFAKHRIAFFLRADNNLY-------QSVNNRWISLDFFDL-  172 (430)
T ss_pred             cEEEEECCCCCCCceEEEECHHHHHHHHHHHHhhhCccccccCCcEEEEEccChhHH-------HHHHhccceeeecCC-
Confidence            3567789999999999999988754332222 222  245555666555321 1221       11212111 222221 


Q ss_pred             CCChhhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHhCCceecccCccccc
Q 014065          238 RFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEAT  317 (431)
Q Consensus       238 ~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~i~~~yg~tE~~  317 (431)
                      .-+.+.+++.|++++|+++.+.|+.+..|+++...... . .+++.++++||.++++..+.+++.||+++++.||+|| |
T Consensus       173 ~~~~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~l-~-~~~k~ii~~~E~l~~~~r~~Ie~~fg~~V~~~YG~tE-g  249 (430)
T TIGR02304       173 LAPFQAHIKRLNQRKPSIIVAPPSVLRALALEVMEGEL-T-IKPKKVISVAEVLEPQDRELIRNVFKNTVHQIYQATE-G  249 (430)
T ss_pred             CcCHHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcCC-C-CCceEEEEccCCCCHHHHHHHHHHhCCCeeEccCCch-h
Confidence            23688999999999999999999999999987655332 2 4789999999999999999999999999999999999 5


Q ss_pred             CcccCCCCCCCCCCCCCCccccc---cceEE--EECCCCCcCCCCceeeEEEeCCccccccccCcchhhhcccCCceecC
Q 014065          318 HLMSSNPLPEDGPHKPGSVGRPV---GQEIA--ILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTG  392 (431)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~G~~~---~~~~~--i~d~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TG  392 (431)
                      .+...+..        +  +.-+   ...++  ++|++++       ++.++++      +.+.      .++---|+||
T Consensus       250 ~la~eC~~--------g--~lHl~ed~~~vE~~ivD~~~~-------~~~ViT~------L~n~------~~PlIRYrtG  300 (430)
T TIGR02304       250 FLASTCRC--------G--TLHLNEDLVHIEKQYLDEHKR-------FVPIITD------FTRT------TQPIVRYRLN  300 (430)
T ss_pred             heEEecCC--------C--CEEEccccEEEEeeEECCCCc-------eEEEEec------CCCc------cceEEeeeCC
Confidence            44333211        1  1112   13344  7887653       3346655      2211      1111249999


Q ss_pred             ceEEEcCC----C----eE-EEecccccceec---CCeec--cccceecc
Q 014065          393 DIGYFDSD----G----YL-HLVGRIKELINR---GGNLH--ESISLFLA  428 (431)
Q Consensus       393 D~~~~~~~----g----~l-~~~gR~~d~i~~---~G~~i--~~~~iE~a  428 (431)
                      |++...++    |    .+ .+.||.+|+++.   +|..+  +|..++.+
T Consensus       301 D~~~~~~~~C~CGr~~~~i~~I~GR~dD~l~~~~~~G~~v~v~p~~~~~~  350 (430)
T TIGR02304       301 DILVESEQPCSCGSATMAIERIEGRQDDIFQLITRSGDEQTVFPDFIRRV  350 (430)
T ss_pred             CEEEeCCCCCCCCCcccccCCccCccCCEEEEecCCCCeEEeCHHHHHHH
Confidence            99988544    2    23 388999999974   45554  77766643

Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.

>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria

Probab=99.23  E-value=3.6e-09  Score=96.37  Aligned_cols=240  Identities=18%  Similarity=0.233  Sum_probs=144.4

Q ss_pred             CCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHH---h-cCCC-CCeEEEecChhhHH-HH---HHHHHHHHhcCC
Q 014065          159 DPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSV---Y-KLTE-SDSTVIVLPLFHVH-GM---LAGLLSSFAAGA  229 (431)
Q Consensus       159 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~-~~~~-~~~~~~~~p~~~~~-~~---~~~~~~~l~~G~  229 (431)
                      ..+++..++.||||||.|--+.+.+..+..+...+...   + +... ...++...|-.... .+   ....+..+..++
T Consensus        87 ~~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~~~  166 (365)
T PF04443_consen   87 PEEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFLGPSRLPMLILDLSPSPENRNSFSARYAGILGELFFGS  166 (365)
T ss_pred             ChhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhcccccCCeEEEEecCCcccccchHHHHHHHHhhcccCc
Confidence            35667889999999999866777666655444333322   2 2222 23344444432211 11   122333344555


Q ss_pred             EEEeCCCCCCChhhHHHHHH----HhcceeeecchHHHHHHHhcccCCC-CCCCC-CccEEEeccC------CCc-HHHH
Q 014065          230 AVTLPAAGRFSASTFWQDMI----KYNATWYTAVPTIHQIVLDRHVAKP-EPVYP-KLRFIRSCSA------SLA-PVIL  296 (431)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~i~----~~~~t~~~~~p~~~~~l~~~~~~~~-~~~~~-~l~~i~~~g~------~~~-~~~~  296 (431)
                      .-.+ ....++.+.+++.+.    +.++-.+++.|.++-.++....+.. ...++ ..+.+-.||.      .++ .++.
T Consensus       167 ~~~l-~~~~ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~~~L~~~s~vi~~GGwK~~~~e~v~r~ef~  245 (365)
T PF04443_consen  167 RFAL-DNDELDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGIRFRLPKGSIVIHGGGWKGRRKEAVSREEFY  245 (365)
T ss_pred             eeee-cCCccCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCCcccCCCCCEEEeCCCCCccccCccCHHHHH
Confidence            5444 333567777777665    3467888888886666665544332 22233 4566666763      364 4677


Q ss_pred             HHHHHHhCC----ceecccCcccccCcccCCCCCCCCCCCCCCccccccceEEEECC-CCCcCCCCceeeEEEeCCcccc
Q 014065          297 SRLEEAFGA----PVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPVGQEIAILDE-IGVPQEGGAKGEVCIRGPNVTK  371 (431)
Q Consensus       297 ~~~~~~~~~----~i~~~yg~tE~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~i~d~-~~~~~~~~~~Gel~v~~~~~~~  371 (431)
                      +.+++.||+    .+++.||+||.....+.+..    ..      .+.+..+.|+|+ +.++++.|+.|-|-+-.+... 
T Consensus       246 ~~l~~~~Gv~~~~~i~~~ygmtEl~s~~~~~~~----~~------~~~p~wV~iRDp~tl~~~~~Ge~Gli~vidl~~~-  314 (365)
T PF04443_consen  246 ARLQEVFGVIPIENIYDMYGMTELNSQAYECGH----GH------FHVPPWVIIRDPETLEPLPPGETGLIQVIDLANT-  314 (365)
T ss_pred             HHHHHHHCCCCHHHeeeeeeccccchhheeCCC----Cc------ccCCCeEEEECCCCCcCCCCCCeeEEEEEccccc-
Confidence            778888987    69999999997755443321    00      122222778884 478999999999988765322 


Q ss_pred             ccccCcchhhhcccCCceecCceEEEcCC--------CeEEEecccccceecCCeecccc
Q 014065          372 GYKNNPEANKSAFLFGWFHTGDIGYFDSD--------GYLHLVGRIKELINRGGNLHESI  423 (431)
Q Consensus       372 gy~~~~~~~~~~~~~g~~~TGD~~~~~~~--------g~l~~~gR~~d~i~~~G~~i~~~  423 (431)
                      .|.            +..-|.|+|.+..+        .++.++||.+.-= ++|+....+
T Consensus       315 s~p------------~~IlTeDlGvl~~~~~c~cr~g~~f~vlGR~~~ae-~RGCs~~~~  361 (365)
T PF04443_consen  315 SYP------------GFILTEDLGVLHGDDDCGCRKGKYFEVLGRADGAE-IRGCSLTFA  361 (365)
T ss_pred             CCC------------cEEEEcceeeecCCCCCCCccCCEEEEEeCCCCCc-cCCcHHHHH
Confidence            111            23679999988654        2799999988643 456655433

LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence

>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin

Probab=98.54  E-value=4.2e-08  Score=94.69  Aligned_cols=126  Identities=19%  Similarity=0.297  Sum_probs=76.9

Q ss_pred             CCCccEEEeccCCCcHHHHHHHHHHhC-Cce-ecccCcccccCcccCCCCCCCCCCCCCCccccc---cceEEEEC--CC
Q 014065          278 YPKLRFIRSCSASLAPVILSRLEEAFG-APV-LEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV---GQEIAILD--EI  350 (431)
Q Consensus       278 ~~~l~~i~~~g~~~~~~~~~~~~~~~~-~~i-~~~yg~tE~~~~~~~~~~~~~~~~~~~~~G~~~---~~~~~i~d--~~  350 (431)
                      .|+++.+.+.+..-...-.+.+++.++ +.+ ...|++||+-..+...         ++..+.++   ..-.+.++  +.
T Consensus       266 WP~L~~v~~~~~g~~~~y~~~l~~~~g~~~~~~~~y~ASEg~i~i~~~---------~~~~~~~l~~~~~ffEFip~~~~  336 (528)
T PF03321_consen  266 WPNLKLVSCWGGGSMAPYAPKLREYFGGVPIQSKGYGASEGFIGIPLD---------PEDPGYVLAPDSGFFEFIPVDED  336 (528)
T ss_dssp             STT--EEEEE-SGGGGGGHHHHHHHHTTS-EEE-EEEETTEEEEEES----------CCC--EEE-TTSSEEEEEE-STT
T ss_pred             CCCCcEEEEEcCCChHHHHHHHHHHcCCCceeeccccccceEEEEecC---------CCCCceEeecCCeEEEEEeccCC
Confidence            689998777766666677777777774 444 4779999964332221         11122222   22333333  21


Q ss_pred             C------------CcCCCCceeeEEEeCCccccccccCcchhhhcccCCceecCceEEEcC--CC--eEEEeccccccee
Q 014065          351 G------------VPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDS--DG--YLHLVGRIKELIN  414 (431)
Q Consensus       351 ~------------~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~--~g--~l~~~gR~~d~i~  414 (431)
                      +            ..+..|+..||+++.   ..|.|.             |+.||++++..  ++  .+.|+||.+.++.
T Consensus       337 ~~~~~~~~~~l~~~ele~G~~YelviTt---~~GLyR-------------Y~iGDvVrv~gf~~~~P~i~F~~R~~~~l~  400 (528)
T PF03321_consen  337 EQNPSEQPKTLLLHELEVGEEYELVITT---NSGLYR-------------YRIGDVVRVTGFYNQTPRIEFVGRRGQVLS  400 (528)
T ss_dssp             -------SSSEEGGG--TT-EEEEEEES---TTS-SS-------------EEECEEEEEEEEETTEEEEEEEEETTEEE-
T ss_pred             cccccCCCceecHHHhcCCCeEEEEEec---ccceee-------------eecCCEEEEeeccCCCcEEEEeccCCceee
Confidence            1            246778889999987   356554             99999999853  44  7999999999999


Q ss_pred             cCCeeccccceecc
Q 014065          415 RGGNLHESISLFLA  428 (431)
Q Consensus       415 ~~G~~i~~~~iE~a  428 (431)
                      +.|++++-.+|+.|
T Consensus       401 l~gEkl~e~~v~~a  414 (528)
T PF03321_consen  401 LFGEKLSEEQVQEA  414 (528)
T ss_dssp             SSS--EEHHHHHHH
T ss_pred             cceeecCHHHHHHH
Confidence            99999999988876

The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A.

>PRK09188 serine/threonine protein kinase; Provisional

Probab=98.37  E-value=1.8e-07  Score=85.39  Aligned_cols=40  Identities=18%  Similarity=0.120  Sum_probs=36.0

Q ss_pred             ccCCceecCceEEE-cCCCeEEEecccccceecCC---eeccccceeccc
Q 014065          384 FLFGWFHTGDIGYF-DSDGYLHLVGRIKELINRGG---NLHESISLFLAK  429 (431)
Q Consensus       384 ~~~g~~~TGD~~~~-~~~g~l~~~gR~~d~i~~~G---~~i~~~~iE~a~  429 (431)
                      +.+|||+|||+|++ |+||+++|.||.+     +|   ++|+|. ||.+.
T Consensus       206 ~~dgW~~TGDlg~~~d~dG~l~~~gR~~-----~G~~i~nV~p~-IE~~L  249 (365)
T PRK09188        206 PSRIWLATGKKVYNFITRGLFSWSDGEG-----TGDRIDNEAPA-IQAAL  249 (365)
T ss_pred             ccCcEEeCCCEEEEEcCCCeEEEEecCc-----CCcCceeeCHH-HHHHH
Confidence            46799999999998 7999999999998     78   899999 99763

>PLN02249 indole-3-acetic acid-amido synthetase

Probab=98.11  E-value=0.00011  Score=71.49  Aligned_cols=128  Identities=22%  Similarity=0.285  Sum_probs=79.3

Q ss_pred             CCCCc---cEEEeccCCCcHHHHHHHHHHh-CCc-eecccCcccccCcccCCCCCCCCCCCCCCccccc---cceEEEEC
Q 014065          277 VYPKL---RFIRSCSASLAPVILSRLEEAF-GAP-VLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV---GQEIAILD  348 (431)
Q Consensus       277 ~~~~l---~~i~~~g~~~~~~~~~~~~~~~-~~~-i~~~yg~tE~~~~~~~~~~~~~~~~~~~~~G~~~---~~~~~i~d  348 (431)
                      ..|++   ..+..||-.   .-...++..+ +.. +...|++||+-..+-..+.     ..+..++.-+   +.-.+.++
T Consensus       300 lWPnl~~i~~~~~G~~~---~Y~~~l~~~~g~~~~~~~~Y~ASEg~~gi~~~~~-----~~p~~~~~~l~~~~~ffEFiP  371 (597)
T PLN02249        300 IWPNTKYLDVIVTGAMA---QYIPMLEYYSGGLPMASTIYASSESYFGINLNPM-----CKPSEVSYTIMPNMAYFEFLP  371 (597)
T ss_pred             hCCCCCeEEEEecCChH---HHHHHHHHHcCCCccccccccccceEEEeecCCC-----CCCCCcceEecCCcEEEEeee
Confidence            35774   444555544   4445555445 443 4578999996533322211     1111122221   23333332


Q ss_pred             --CCC------------CcCCCCceeeEEEeCCccccccccCcchhhhcccCCceecCceEEEcC----CCeEEEecccc
Q 014065          349 --EIG------------VPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDS----DGYLHLVGRIK  410 (431)
Q Consensus       349 --~~~------------~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~----~g~l~~~gR~~  410 (431)
                        +.|            ..++.|+.-+|+|+.   ..|.|.             |+.||++++..    --.+.|+||.+
T Consensus       372 ~~~~~~~~~~~~~~v~l~eVe~G~~Y~lVvTT---~~GLyR-------------Y~iGDvVrvtgf~~~~P~i~F~gR~~  435 (597)
T PLN02249        372 HNHDGDGALDETSLVELADVEVGKEYELVITT---YAGLYR-------------YRVGDILRVTGFHNSAPQFKFIRRKN  435 (597)
T ss_pred             cccCCcccCCCCcEecHHHcCCCCeEEEEEEc---ccceeE-------------eecCCEEEEeeccCCCcEEEEEccCC
Confidence              211            135678888999987   445554             99999999863    33799999999


Q ss_pred             cceecCCeeccccceecc
Q 014065          411 ELINRGGNLHESISLFLA  428 (431)
Q Consensus       411 d~i~~~G~~i~~~~iE~a  428 (431)
                      .++.+.|++++-.+++.|
T Consensus       436 ~~ls~~GEKl~e~~v~~A  453 (597)
T PLN02249        436 VLLSIESDKTDEADLQKA  453 (597)
T ss_pred             cceecccccCCHHHHHHH
Confidence            999999999999999886

>PLN02247 indole-3-acetic acid-amido synthetase

Probab=98.10  E-value=0.0003  Score=68.13  Aligned_cols=131  Identities=19%  Similarity=0.291  Sum_probs=84.6

Q ss_pred             CCCCccEEEeccCCCcHHHHHHHHHHh-CCcee-cccCcccccCcccCCCCCCCCCCCCCCccccc--c-ceEEEEC-CC
Q 014065          277 VYPKLRFIRSCSASLAPVILSRLEEAF-GAPVL-EAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV--G-QEIAILD-EI  350 (431)
Q Consensus       277 ~~~~l~~i~~~g~~~~~~~~~~~~~~~-~~~i~-~~yg~tE~~~~~~~~~~~~~~~~~~~~~G~~~--~-~~~~i~d-~~  350 (431)
                      ..|+++.|-+.-..-...-...++-.+ |++++ .+|++||+-.-+-..+.     ..+..+..++  + .-.+.++ ++
T Consensus       291 LWP~lk~I~~~~tGsm~~Y~~~L~~y~gglpl~s~~Y~sSE~~~ginl~p~-----~~p~~~sy~L~p~~~yFEFip~~~  365 (606)
T PLN02247        291 LWPRTKYIEVIVTGSMAQYIPTLEFYSGGLPLVSTMYASSECYFGINLKPL-----SDPSDVSYTLLPNMAYFEFLPVDK  365 (606)
T ss_pred             hCCCCcEEEEECCCCHHHHHHHHHHHcCCCceecccccccceEEEeccCcC-----CCccCCceeecCCcEEEEEeecCC
Confidence            368888887766666666667776544 67766 57999996543333221     1112222222  2 2333332 11


Q ss_pred             C-----------------------------CcCCCCceeeEEEeCCccccccccCcchhhhcccCCceecCceEEEc---
Q 014065          351 G-----------------------------VPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFD---  398 (431)
Q Consensus       351 ~-----------------------------~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~---  398 (431)
                      +                             ..++.|+.-||+|+.   ..|.+.             |+.||+.++.   
T Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~evk~G~~YelVvTt---~~GLYR-------------YrlGDvv~V~GF~  429 (606)
T PLN02247        366 NNGEVIHFVQCNGTDDDDDALKEDLEIVDLVDVKVGHYYELVVTT---FTGLYR-------------YRVGDILMVTGFY  429 (606)
T ss_pred             CcccccccccccccccccccccccCceecHHHccCCCeEEEEEEe---cCceEE-------------EecCCEEEEeeec
Confidence            1                             135678888999986   445443             9999999974   


Q ss_pred             -CCCeEEEecccccceecCCeeccccceecc
Q 014065          399 -SDGYLHLVGRIKELINRGGNLHESISLFLA  428 (431)
Q Consensus       399 -~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a  428 (431)
                       ..-.+.|++|.+.+..+.|++.+-.++-.|
T Consensus       430 n~~P~~~Fv~R~~~vlsi~gEK~tE~~l~~A  460 (606)
T PLN02247        430 NNAPQFRFVQRRNVVLSIDTDKTNEEDLLKA  460 (606)
T ss_pred             CCCceEEEEecCCceeecccccCCHHHHHHH
Confidence             445899999999999999999987776443

>PLN02620 indole-3-acetic acid-amido synthetase

Probab=97.98  E-value=0.00036  Score=67.42  Aligned_cols=131  Identities=18%  Similarity=0.280  Sum_probs=84.5

Q ss_pred             CCCCccEEEeccCCCcHHHHHHHHHHh-CCcee-cccCcccccCcccCCCCCCCCCCCCCCccccc--c-ceEEEEC--C
Q 014065          277 VYPKLRFIRSCSASLAPVILSRLEEAF-GAPVL-EAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV--G-QEIAILD--E  349 (431)
Q Consensus       277 ~~~~l~~i~~~g~~~~~~~~~~~~~~~-~~~i~-~~yg~tE~~~~~~~~~~~~~~~~~~~~~G~~~--~-~~~~i~d--~  349 (431)
                      ..|+++.|-+....-...-...++-.+ |+++. ..|++||+-.-+-.++.     ..+..+..++  + .-.+.++  +
T Consensus       302 LWP~lk~I~~~~tGsm~~Y~p~L~~y~gglpl~~~~Y~ASE~~~ginl~P~-----~~p~~~sy~L~p~~~yFEFip~~~  376 (612)
T PLN02620        302 LWPNTKYVDVIVTGTMSQYIPTLDYYSNGLPLVCTMYASSECYFGVNLNPL-----CKPSEVSYTLIPTMAYFEFLPVHR  376 (612)
T ss_pred             hCCCCcEEEEECCCCHHHHHHHHHHHcCCCccccccccccceEEEeccCCC-----CCcccceeeecCCcEEEEEeeccC
Confidence            368888887766666666666665444 67766 66999996544333332     1112222222  1 2233332  1


Q ss_pred             -C-----------------C-----CcCCCCceeeEEEeCCccccccccCcchhhhcccCCceecCceEEEc----CCCe
Q 014065          350 -I-----------------G-----VPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFD----SDGY  402 (431)
Q Consensus       350 -~-----------------~-----~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~----~~g~  402 (431)
                       +                 +     ..++.|+.-|++|+.   ..|.+.             |+.||+.++.    ..-.
T Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~YelvvTt---~~GLyR-------------YrlGDvv~V~Gf~n~~P~  440 (612)
T PLN02620        377 NNGVTNSISLPKSLNEKEQQELVDLVDVKLGQEYELVVTT---YAGLYR-------------YRVGDVLRVAGFKNKAPQ  440 (612)
T ss_pred             cccccccccccccccccccCccccHHHccCCCeEEEEEEe---cCceEE-------------EecCCEEEEeeecCCCce
Confidence             1                 1     125678888999986   445443             9999999984    3457


Q ss_pred             EEEecccccceecCCeeccccceecc
Q 014065          403 LHLVGRIKELINRGGNLHESISLFLA  428 (431)
Q Consensus       403 l~~~gR~~d~i~~~G~~i~~~~iE~a  428 (431)
                      +.|++|.+.+..+.|++.+-.++-.|
T Consensus       441 ~~Fv~R~~~~lsi~gEK~tE~~l~~A  466 (612)
T PLN02620        441 FSFICRKNVVLSIDSDKTDEVELQNA  466 (612)
T ss_pred             EEEEeecCceeecccccCCHHHHHHH
Confidence            99999999999999999987776544

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=96.20  E-value=0.045  Score=50.92  Aligned_cols=95  Identities=18%  Similarity=0.168  Sum_probs=79.1

Q ss_pred             CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCc--HHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHhcCCceEE
Q 014065           29 FDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNT--VEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLL  106 (431)
Q Consensus        29 ~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~--~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i  106 (431)
                      --+|+.|....+..+|+.|...|..+||+|.....-+  ..-+.+.+|+.++|+.++|+.+. ..+.-..++++.++.+|
T Consensus       108 ~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~g-~~~~~~~l~~df~~tvI  186 (438)
T COG1541         108 FGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISGG-NTERQLELMKDFKPTVI  186 (438)
T ss_pred             eecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCCc-cHHHHHHHHHhcCCcEE
Confidence            3589999999999999999999999999988887622  12267889999999999999884 45566788999999999


Q ss_pred             EecCCchhHHHHHHHhcC
Q 014065          107 LTPAEGNAAAQAAASKLN  124 (431)
Q Consensus       107 i~~~~~~~~~~~~~~~~~  124 (431)
                      .+.+...-.+.+.+.+..
T Consensus       187 ~~tps~~l~lae~~~~~G  204 (438)
T COG1541         187 AATPSYLLYLAEEAEEEG  204 (438)
T ss_pred             EEChHHHHHHHHHHHHcC
Confidence            999998777777766653

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=90.78  E-value=2.5  Score=40.56  Aligned_cols=81  Identities=17%  Similarity=0.137  Sum_probs=61.9

Q ss_pred             CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHH--HHHHHHHHHHhCcEEEecCCCCCHHHHHHHHhcCCceEE
Q 014065           29 FDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVE--FVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLL  106 (431)
Q Consensus        29 ~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~--~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i  106 (431)
                      .-+|..++...+...+..+...|+++||++.+..+.+..  .....+++...|+..++...   .+....+++..++..+
T Consensus       104 v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~~---~~~~~~~i~~~~~t~l  180 (445)
T TIGR03335       104 FFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEGK---CTFPIRIIESYRPTGI  180 (445)
T ss_pred             eeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCCc---hhHHHHHHHHhCCCEE
Confidence            347899999888888988888899999999998876542  33456788999998876643   2344677888999988


Q ss_pred             EecCCc
Q 014065          107 LTPAEG  112 (431)
Q Consensus       107 i~~~~~  112 (431)
                      +.....
T Consensus       181 ~~~ps~  186 (445)
T TIGR03335       181 VASVFK  186 (445)
T ss_pred             EECHHH
Confidence            876543

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=90.73  E-value=2.5  Score=40.27  Aligned_cols=88  Identities=13%  Similarity=0.130  Sum_probs=66.9

Q ss_pred             CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcH--HHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHhcCCceEE
Q 014065           29 FDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTV--EFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLL  106 (431)
Q Consensus        29 ~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~--~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i  106 (431)
                      ..+|..++......++..+...|+++||++....+.+.  ......+++...|+..+++++.. .+.+...+++.+++++
T Consensus        93 v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~i~~~~~t~l  171 (422)
T TIGR02155        93 VGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPISGGQ-TEKQVQLIQDFKPDII  171 (422)
T ss_pred             eccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecCCCC-HHHHHHHHHHHCCCEE
Confidence            34688888777777788888889999999887665542  22334677889999999887764 5678889999999999


Q ss_pred             EecCCchhHHH
Q 014065          107 LTPAEGNAAAQ  117 (431)
Q Consensus       107 i~~~~~~~~~~  117 (431)
                      +..+.....+.
T Consensus       172 ~~~Ps~l~~L~  182 (422)
T TIGR02155       172 MVTPSYMLNLL  182 (422)
T ss_pred             EEcHHHHHHHH
Confidence            99887655443

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>PLN02736 long-chain acyl-CoA synthetase

Probab=82.60  E-value=35  Score=34.71  Aligned_cols=101  Identities=11%  Similarity=-0.043  Sum_probs=72.7

Q ss_pred             eeechHHHHHHHHHHHH---HhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCCCCCCChhhHHHHHHHhccee
Q 014065          179 VPLTQNNLAASVSNIKS---VYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATW  255 (431)
Q Consensus       179 v~~s~~~l~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~  255 (431)
                      ..+|...+...+..+..   ..++.++|++...++-...  +....++++..|+.++.... .+.++.+...+++.+++.
T Consensus        77 ~~lTy~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e--~~~~~lA~~~~G~v~vpl~~-~~~~~~l~~il~~~~~~~  153 (651)
T PLN02736         77 KWMTYGEAGTARTAIGSGLVQHGIPKGACVGLYFINRPE--WLIVDHACSAYSYVSVPLYD-TLGPDAVKFIVNHAEVAA  153 (651)
T ss_pred             EEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHH--HHHHHHHHHHcCCeEEEeec-CCCHHHHHHHHhccCCCE
Confidence            45788888777665544   4589999999888875443  34447888889998886543 678999999999999999


Q ss_pred             eecchHHHHHHHhcccCCCCCCCCCccEEEec
Q 014065          256 YTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSC  287 (431)
Q Consensus       256 ~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~  287 (431)
                      ++..+..+..+......     ++.++.++..
T Consensus       154 l~~~~~~~~~~~~~~~~-----~~~l~~ii~~  180 (651)
T PLN02736        154 IFCVPQTLNTLLSCLSE-----IPSVRLIVVV  180 (651)
T ss_pred             EEECHHHHHHHHHHhhc-----CCCceEEEEE
Confidence            99998877766543221     3455555543

>TIGR03089 conserved hypothetical protein TIGR03089

Probab=81.22  E-value=12  Score=32.21  Aligned_cols=54  Identities=22%  Similarity=0.289  Sum_probs=43.6

Q ss_pred             HHcCCCCCCEEEEECCCcH--HHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHhcCCc
Q 014065           48 VAAGINAGDVVALTFPNTV--EFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSES  103 (431)
Q Consensus        48 ~~~gl~~gd~V~i~~~n~~--~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~  103 (431)
                      ...|++++|++. .+|-..  -....+++++..|++.+.+ +..+.+.+-..+++.++
T Consensus       171 ~~~~l~~~D~~l-~~Pl~H~~gl~~~~~~~l~~G~t~v~~-~rFd~~~~l~~i~~~~v  226 (227)
T TIGR03089       171 RAAGLPPGDRVL-VLAWTDLEDFLATLLAPLAAGGSLVLV-THPDPARLDQIAETERV  226 (227)
T ss_pred             hhcCCCCCCeEE-ecCCCchHHHHHHHHHHhccCceEEEe-cCCCHHHHHHHHHhhcC
Confidence            556899999999 888754  3445789999999998888 68888888888887765

This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501.

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]

Probab=81.16  E-value=18  Score=34.18  Aligned_cols=89  Identities=19%  Similarity=0.237  Sum_probs=65.1

Q ss_pred             CCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHH---HhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCC
Q 014065          159 DPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKS---VYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPA  235 (431)
Q Consensus       159 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~  235 (431)
                      .++.++++.        -....+|.+.+...+..+..   ..++++++++....+-..  .++..+++++..|...+..+
T Consensus         8 ~pd~~a~~~--------~~~~~~Ty~~l~~~v~~la~~L~~~g~~~~~~V~i~~~n~~--~~~~~~~A~~~~G~~~v~l~   77 (417)
T PF00501_consen    8 YPDRIALID--------DEGRSLTYKQLYERVRKLAAALRKLGVKKGDRVAILLPNSI--EFVVAFLACLRAGAIPVPLD   77 (417)
T ss_dssp             STTSEEEEE--------TTTEEEEHHHHHHHHHHHHHHHHHTTSSTTSEEEEEESSSH--HHHHHHHHHHHTT-EEEEEE
T ss_pred             CCCceEEEE--------CCCEEEEHHHHHHHHHHHhhHHHHhCCCccccccccCCccc--eeeeeecccccccccccccc
Confidence            456667655        23457888888766665443   457888998888877643  34555888899999998765


Q ss_pred             CCCCChhhHHHHHHHhcceeeec
Q 014065          236 AGRFSASTFWQDMIKYNATWYTA  258 (431)
Q Consensus       236 ~~~~~~~~~~~~i~~~~~t~~~~  258 (431)
                      + ......+...+++.++++++.
T Consensus        78 ~-~~~~~~~~~~l~~~~~~~ii~   99 (417)
T PF00501_consen   78 P-SLSEDELRHILRQSGPKVIIT   99 (417)
T ss_dssp             T-TSSHHHHHHHHHHHTESEEEE
T ss_pred             c-ccccccccccccccceeEEEE
Confidence            4 668899999999999999995

This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	431
3r44_A	517	Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas		7e-37
3t5b_A	396	Crystal Structure Of N-Terminal Domain Of Facl13 Fr		6e-34
4fuq_A	503	Crystal Structure Of Apo Matb From Rhodopseudomonas		2e-33
3ivr_A	509	Crystal Structure Of Putative Long-Chain-Fatty-Acid		2e-30
4gxr_A	503	Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len		2e-28
4gxq_A	506	Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer		2e-28
4fut_A	503	Crystal Structure Of Atp Bound Matb From Rhodopseud		2e-28
3nyq_A	505	Malonyl-Coa Ligase Ternary Product Complex With Met		5e-28
3a9u_A	536	Crystal Structures And Enzymatic Mechanisms Of A Po		9e-27
3g7s_A	549	Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li		2e-24
3qya_A	582	Crystal Structure Of A Red-Emitter Mutant Of Lampyr		2e-24
2d1q_A	548	Crystal Structure Of The Thermostable Japanese Fire		5e-24
2d1s_A	548	Crystal Structure Of The Thermostable Japanese Fire		5e-24
2d1t_A	548	Crystal Structure Of The Thermostable Japanese Fire		6e-24
3tsy_A	979	4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr		2e-23
1ba3_A	550	Firefly Luciferase In Complex With Bromoform Length		1e-20
4g36_A	555	Photinus Pyralis Luciferase In The Adenylate-Formin		1e-20
3iep_A	551	Firefly Luciferase Apo Structure (P41 Form) Length		1e-20
1ult_A	541	Crystal Structure Of Tt0168 From Thermus Thermophil		2e-20
3o82_A	544	Structure Of Base N-Terminal Domain From Acinetobac		2e-20
4g37_A	555	Structure Of Cross-Linked Firefly Luciferase In Sec		3e-20
2v7b_A	529	Crystal Structures Of A Benzoate Coa Ligase From Bu		5e-20
3rg2_A	617	Structure Of A Two-Domain Nrps Fusion Protein Conta		3e-19
3etc_A	580	2.1 A Structure Of Acyl-Adenylate Synthetase From M		3e-19
2p2b_A	652	Acetyl-coa Synthetase, V386a Mutation Length = 652		3e-14
2p2m_A	652	Acetyl-Coa Synthetase, R194a Mutation Length = 652		3e-14
1pg3_A	652	Acetyl Coa Synthetase, Acetylated On Lys609 Length		3e-14
2p20_A	652	Acetyl-Coa Synthetase, R584a Mutation Length = 652		3e-14
2p2f_A	652	Acetyl-coa Synthetase, Wild-type With Acetate, Amp,		3e-14
2p2j_A	652	Acetyl-Coa Synthetase, K609a Mutation Length = 652		3e-14
2p2q_A	652	Acetyl-Coa Synthetase, R584e Mutation Length = 652		3e-14
1mdb_A	539	Crystal Structure Of Dhbe In Complex With Dhb-adeny		1e-13
3ipl_A	501	Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig		4e-13
3pbk_A	583	Structural And Functional Studies Of Fatty Acyl-Ade		7e-13
1md9_A	539	Crystal Structure Of Dhbe In Complex With Dhb And A		1e-11
1amu_A	563	Phenylalanine Activating Domain Of Gramicidin Synth		3e-11
3e7w_A	511	Crystal Structure Of Dlta: Implications For The Rea		2e-10
1ry2_A	663	Crystal Structure Of Yeast Acetyl-Coenzyme A Synthe		3e-10
2qvz_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATIO		6e-10
3cw8_X	504	4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cb		1e-09
2qvx_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATIO		2e-09
1t5d_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chl		3e-09
3dlp_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P,		3e-09
3l8c_A	521	Structure Of Probable D-Alanine--Poly(Phosphoribito		3e-09
2vsq_A	1304	Structure Of Surfactin A Synthetase C (Srfa-C), A N		4e-09
2vsq_A	1304	Structure Of Surfactin A Synthetase C (Srfa-C), A N		2e-06
3b7w_A	570	Crystal Structure Of Human Acyl-Coa Synthetase Medi		4e-09
2wd9_A	569	Crystal Structure Of Human Acyl-coa Synthetase Medi		4e-09
3vnq_A	544	Co-crystal Structure Of Nrps Adenylation Protein Cy		1e-08
3dhv_A	512	Crystal Structure Of Dlta Protein In Complex With D		4e-08
3fcc_A	512	Crystal Structure Of Dlta Protein In Complex With A		4e-08
1t5h_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SE		5e-08
4gr4_A	469	Crystal Structure Of Slgn1deltaasub Length = 469		8e-07
4gr5_A	570	Crystal Structure Of Slgn1deltaasub In Complex With		1e-06
3kxw_A	590	The Crystal Structure Of Fatty Acid Amp Ligase From		3e-06

>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517

Iteration: 1
 Score =  151 bits (382), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 120/394 (30%), Positives = 184/394 (46%), Gaps = 22/394 (5%)
Query: 31  LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRXXXXXXXXXXXYT 90
           +TY++++ L  R A  L A GI  GD VAL  PN+VEF  +F    +             
Sbjct: 44  MTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLA 103
Query: 91  PDEFEFYLSDSESKLLLTPAEGNXXXXXXXSKLNISHATATLLDADSELTLSLAHSESDT 150
             E  F LSDS SK+++  A          ++ +        + ADS L   L  + +D 
Sbjct: 104 APEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIGADS-LAERLRSAAADE 162
Query: 151 NAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLP 210
            A+    +D       ++TSGTT  PKGV  T  ++ ++ S+  S   +   D  ++ LP
Sbjct: 163 PAVECGGDDN---LFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLP 219
Query: 211 LFHVHGMXXXXXXXXXXXXXXXXXXXGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRH 270
           +FHV  +                    +F A+  W  +++       AVP I   +  R 
Sbjct: 220 MFHVAALTTVIFSAMRGVTLISMP---QFDATKVWSLIVEERVCIGGAVPAILNFM--RQ 274
Query: 271 VAK-PEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEA----THLMSSNPL 325
           V +  E   P  R+  +  A + P  L ++  A    V++ YA+TE+    T L+S    
Sbjct: 275 VPEFAELDAPDFRYFITGGAPM-PEALIKIYAAKNIEVVQGYALTESCGGGTLLLS---- 329
Query: 326 PEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAF 384
            ED   K GS GR  +  ++A+  + GV +E G +GEV I+   + K Y N PEA + AF
Sbjct: 330 -EDALRKAGSAGRATMFTDVAVRGDDGVIREHG-EGEVVIKSDILLKEYWNRPEATRDAF 387
Query: 385 LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGN 418
             GWF TGDIG  D +GYL++  R+K++I  GG 
Sbjct: 388 DNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGE 421

>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396

Iteration: 1
 Score =  141 bits (356), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 115/381 (30%), Positives = 176/381 (46%), Gaps = 22/381 (5%)
Query: 31  LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRXXXXXXXXXXXYT 90
           +TY++++ L  R A  L A GI  GD VAL  PN+VEF  +F    +             
Sbjct: 30  MTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLA 89
Query: 91  PDEFEFYLSDSESKLLLTPAEGNXXXXXXXSKLNISHATATLLDADSELTLSLAHSESDT 150
             E  F LSDS SK+++  A          ++ +        + ADS L   L  + +D 
Sbjct: 90  APEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIGADS-LAERLRSAAADE 148
Query: 151 NAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLP 210
            A+    +D       ++TSGTT  PKGV  T  ++ ++ S+  S   +   D  ++ LP
Sbjct: 149 PAVECGGDDN---LFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLP 205
Query: 211 LFHVHGMXXXXXXXXXXXXXXXXXXXGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRH 270
           +FHV  +                    +F A+  W  +++       AVP I   +  R 
Sbjct: 206 MFHVAALTTVIFSAMRGVTLISMP---QFDATKVWSLIVEERVCIGGAVPAILNFM--RQ 260
Query: 271 VAK-PEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEA----THLMSSNPL 325
           V +  E   P  R+  +  A + P  L ++  A    V++ YA+TE+    T L+S    
Sbjct: 261 VPEFAELDAPDFRYFITGGAPM-PEALIKIYAAKNIEVVQGYALTESCGGGTLLLS---- 315
Query: 326 PEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAF 384
            ED   K GS GR  +  ++A+  + GV +E G +GEV I+   + K Y N PEA + AF
Sbjct: 316 -EDALRKAGSAGRATMFTDVAVRGDDGVIREHG-EGEVVIKSDILLKEYWNRPEATRDAF 373
Query: 385 LFGWFHTGDIGYFDSDGYLHL 405
             GWF TGDIG  D +GYL++
Sbjct: 374 DNGWFRTGDIGEIDDEGYLYI 394

>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score =  140 bits (352), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 121/414 (29%), Positives = 187/414 (45%), Gaps = 17/414 (4%)
Query: 9   LLNQVIDQFSS--KRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTV 66
           L  ++ D+     K A+  +    ++Y+ +     R A+ LVA G+  GD VA     +V
Sbjct: 5   LFARLFDKLDDPHKLAIETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSV 64
Query: 67  EFVIMFLAVIRXXXXXXXXXXXYTPDEFEFYLSDSESKLLLTPAEGNXXXXXXXSKLNIS 126
           E ++++LA +R           YT  E +++++D+E K+++             +K+   
Sbjct: 65  EALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVG-- 122
Query: 127 HATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNL 186
            AT   L  D   +L+ A + +     + +     D+A  L+TSGTT R KG  L+ +NL
Sbjct: 123 -ATVETLGPDGRGSLTDAAAGASEAFAT-IDRGADDLAAILYTSGTTGRSKGAXLSHDNL 180
Query: 187 AASVSNIKSVYKLTESDSTVIVLPLFHVHGMXXXXXXXXXXXXXXXXXXXGRFSASTFWQ 246
           A++   +   ++ T  D  +  LP++H HG+                    +F       
Sbjct: 181 ASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSXIFLP--KFDPDKILD 238
Query: 247 DMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAP 306
             +   AT    VPT +  +L       E       FI S SA L            G  
Sbjct: 239 --LXARATVLXGVPTFYTRLLQSPRLTKETTGHXRLFI-SGSAPLLADTHREWSAKTGHA 295
Query: 307 VLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILD-EIGVPQEGGAKGEVCI 364
           VLE Y  TE T+  +SNP   DG   PG+VG  + G    + D E G     G  G + +
Sbjct: 296 VLERYGXTE-TNXNTSNPY--DGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGXIEV 352
Query: 365 RGPNVTKGYKNNPEANKSAFL-FGWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
           +GPNV KGY   PE  KS F   G+F TGD+G  D  GY+H++GR K+L+  GG
Sbjct: 353 KGPNVFKGYWRXPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVITGG 406

>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509

Iteration: 1
 Score =  130 bits (326), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 112/406 (27%), Positives = 170/406 (41%), Gaps = 20/406 (4%)
Query: 17  FSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVI 76
           F  + A  V G   LT+       ER AS L+  G++ GD VA+   N  E + +  AV 
Sbjct: 19  FPDRTAFMVDG-VRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVA 77
Query: 77  RXXXXXXXXXXXYTPDEFEFYLSDSESKLLLTPAEGNXXXXXXXSKLNISHATATLLDAD 136
                          DE  F L D    +++   +           L        + D  
Sbjct: 78  LIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGS 137
Query: 137 SELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSV 196
                      SDT   S      +D  + +HT+    RP+G  ++Q NL  + S++   
Sbjct: 138 GPFA-PFKDLASDT-PFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDA 195
Query: 197 YKLTESDSTVIVLPLFHVHGMXXXXXXXXXXXXXXXXXXXGRFSASTFWQDMIKYNATWY 256
           ++LTE+D  + +LPLFHV G+                    +F  +   +D+  +  T  
Sbjct: 196 WRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAA---KFDPAQAARDIEAHKVTVM 252
Query: 257 TAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVLEAYAMTE 315
                +   +LD+  A P     +L  +R+ +    P  + R E     A     +  +E
Sbjct: 253 AEFAPMLGNILDQ--AAPA----QLASLRAVTGLDTPETIERFEATCPNATFWATFGQSE 306
Query: 316 ATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYK 374
            + L +  P  +    +P S GRP+  + +A++D    P   G  GE+ +RGP V KGY 
Sbjct: 307 TSGLSTFAPYRD----RPKSAGRPLFWRTVAVVDAEDRPLPPGEVGEIVLRGPTVFKGYW 362
Query: 375 NNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRI--KELINRGGN 418
           NN  A + AF  GW HTGD+G FD+DGYL   GR   KELI  GG 
Sbjct: 363 NNAAATQHAFRNGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGE 408

>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503

Iteration: 1
 Score =  123 bits (309), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 113/399 (28%), Positives = 175/399 (43%), Gaps = 15/399 (3%)
Query: 22  ALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRXXXX 81
           A+  +    ++Y+ +     R A+ LVA G+  GD VA     +VE ++++LA +R    
Sbjct: 20  AIETAAGDXISYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGV 79
Query: 82  XXXXXXXYTPDEFEFYLSDSESKLLLTPAEGNXXXXXXXSKLNISHATATLLDADSELTL 141
                  YT  E +++++D+E  +++             + +  +  T    D    LT 
Sbjct: 80  YLPLNTAYTLHELDYFITDAEPXIVVCDPSXRDGIAAIAAXVGATVETLGP-DGRGSLTD 138
Query: 142 SLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTE 201
           + A +      I +  +D   +A  L+TSGTT R  G  L+ +NLA++   +   ++ T 
Sbjct: 139 AAAGASEAFATIDRGADD---LAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTP 195
Query: 202 SDSTVIVLPLFHVHGMXXXXXXXXXXXXXXXXXXXGRFSASTFWQDMIKYNATWYTAVPT 261
            D  +  LP++H HG+                     F        M +  AT    VPT
Sbjct: 196 DDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPX--FDPDXILDLMAR--ATVLMGVPT 251
Query: 262 IHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMS 321
            +  +L       E     +R   S SA L            G  VLE Y MTE T++ +
Sbjct: 252 FYTRLLQSPRLTXETT-GHMRLFISGSAPLLADTHREWSAXTGHAVLERYGMTE-TNMNT 309
Query: 322 SNPLPEDGPHKPGSVGRPV-GQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEA 379
           SNP   DG   PG+VG  + G    + D E G     G  G + + GPNV  GY   PE 
Sbjct: 310 SNPY--DGDRVPGAVGPALPGVSARVTDPETGXELPRGDIGMIEVXGPNVFXGYWRMPEX 367
Query: 380 NKSAFL-FGWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
             S F   G+F TGD+G  D  GY+H++GR  +L+  GG
Sbjct: 368 TXSEFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGG 406

>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506

Iteration: 1
 Score =  123 bits (309), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 112/390 (28%), Positives = 172/390 (44%), Gaps = 15/390 (3%)
Query: 31  LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRXXXXXXXXXXXYT 90
           ++Y+ +     R A+ LVA G+  GD VA     +VE ++++LA +R           YT
Sbjct: 29  ISYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVYLPLNTAYT 88
Query: 91  PDEFEFYLSDSESKLLLTPAEGNXXXXXXXSKLNISHATATLLDADSELTLSLAHSESDT 150
             E +++++D+E  +++             + +  +  T    D    LT + A +    
Sbjct: 89  LHELDYFITDAEPXIVVCDPSXRDGIAAIAAXVGATVETLGP-DGRGSLTDAAAGASEAF 147
Query: 151 NAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLP 210
             I +  +D   +A  L+TSGTT R  G  L+ +NLA++   +   ++ T  D  +  LP
Sbjct: 148 ATIDRGADD---LAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALP 204
Query: 211 LFHVHGMXXXXXXXXXXXXXXXXXXXGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRH 270
           ++H HG+                     F        M +  AT    VPT +  +L   
Sbjct: 205 IYHTHGLFVASNVTLFARGSMIFLPX--FDPDXILDLMAR--ATVLMGVPTFYTRLLQSP 260
Query: 271 VAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGP 330
               E     +R   S SA L            G  VLE Y MTE T++ +SNP   DG 
Sbjct: 261 RLTXETT-GHMRLFISGSAPLLADTHREWSAXTGHAVLERYGMTE-TNMNTSNPY--DGD 316
Query: 331 HKPGSVGRPV-GQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFL-FG 387
             PG+VG  + G    + D E G     G  G + + GPNV  GY   PE   S F   G
Sbjct: 317 RVPGAVGPALPGVSARVTDPETGXELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDG 376
Query: 388 WFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
           +F TGD+G  D  GY+H++GR  +L+  GG
Sbjct: 377 FFITGDLGXIDERGYVHILGRGXDLVITGG 406

>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score =  123 bits (309), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 113/399 (28%), Positives = 175/399 (43%), Gaps = 15/399 (3%)
Query: 22  ALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRXXXX 81
           A+  +    ++Y+ +     R A+ LVA G+  GD VA     +VE ++++LA +R    
Sbjct: 20  AIETAAGDXISYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGV 79
Query: 82  XXXXXXXYTPDEFEFYLSDSESKLLLTPAEGNXXXXXXXSKLNISHATATLLDADSELTL 141
                  YT  E +++++D+E  +++             + +  +  T    D    LT 
Sbjct: 80  YLPLNTAYTLHELDYFITDAEPXIVVCDPSXRDGIAAIAAXVGATVETLGP-DGRGSLTD 138
Query: 142 SLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTE 201
           + A +      I +  +D   +A  L+TSGTT R  G  L+ +NLA++   +   ++ T 
Sbjct: 139 AAAGASEAFATIDRGADD---LAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTP 195
Query: 202 SDSTVIVLPLFHVHGMXXXXXXXXXXXXXXXXXXXGRFSASTFWQDMIKYNATWYTAVPT 261
            D  +  LP++H HG+                     F        M +  AT    VPT
Sbjct: 196 DDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPX--FDPDXILDLMAR--ATVLMGVPT 251
Query: 262 IHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMS 321
            +  +L       E     +R   S SA L            G  VLE Y MTE T++ +
Sbjct: 252 FYTRLLQSPRLTXETT-GHMRLFISGSAPLLADTHREWSAXTGHAVLERYGMTE-TNMNT 309
Query: 322 SNPLPEDGPHKPGSVGRPV-GQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEA 379
           SNP   DG   PG+VG  + G    + D E G     G  G + + GPNV  GY   PE 
Sbjct: 310 SNPY--DGDRVPGAVGPALPGVSARVTDPETGXELPRGDIGMIEVXGPNVFXGYWRMPEX 367
Query: 380 NKSAFL-FGWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
             S F   G+F TGD+G  D  GY+H++GR  +L+  GG
Sbjct: 368 TXSEFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGG 406

>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505

Iteration: 1
 Score =  122 bits (305), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 102/309 (33%), Positives = 152/309 (49%), Gaps = 20/309 (6%)
Query: 123 LNISHATATLLDADSELTLSLAHSES------DTNAISKLTNDPSDVALFLHTSGTTSRP 176
           L+ S  +  L   D+EL  +L   E          A+ +   D  D AL ++TSGTT  P
Sbjct: 111 LSDSAPSLVLAPPDAELPPALGALERVDVDVRARGAVPEDGADDGDPALVVYTSGTTGPP 170
Query: 177 KGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMXXXXXXXXXXXXXXXXXXX 236
           KG  + +  LA ++  +   ++ T  D  V  LPLFHVHG+                   
Sbjct: 171 KGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGL--VLGILGPLRRGGSVRHL 228
Query: 237 GRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPE--PVYPKLRFIRSCSASLAPV 294
           GRFS     +++    AT    VPT++  + +   A PE        R + S SA+L   
Sbjct: 229 GRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVH 287
Query: 295 ILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVP 353
              R+  A G  V+E Y MTE   LM+++ +  DG  + G+VG P+ G E+ +++E G P
Sbjct: 288 DHERIAAATGRRVIERYGMTET--LMNTS-VRADGEPRAGTVGVPLPGVELRLVEEDGTP 344
Query: 354 ---QEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF-GWFHTGDIGYFDSDGYLHLVGR- 408
               +G + GE+ +RGPN+   Y N P+A  +AF   G+F TGD+   D DGY+ +VGR 
Sbjct: 345 IAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRK 404
Query: 409 IKELINRGG 417
             +LI  GG
Sbjct: 405 ATDLIKSGG 413

>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536

Iteration: 1
 Score =  117 bits (294), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 125/418 (29%), Positives = 182/418 (43%), Gaps = 30/418 (7%)
Query: 18  SSKRALSVSGKFDL-TYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVI 76
           SSK  L      D+ TY+ +     R AS L   GI  GDV+ L  P++ EFV+ FL   
Sbjct: 36  SSKPCLINGANGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGAS 95
Query: 77  RXXXXXXXXXXXYTPDEFEFYLSDSESKLLLTPAEGNXXXXXXXSKLNISHATATLLDAD 136
                        TP E   +   S +KLL+T A           +   S      +D+ 
Sbjct: 96  HRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARE---SDVKVMCVDSA 152
Query: 137 SELTLSLAH-SESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVS---- 191
            +  L  +  +++D N   ++   P DV    ++SGTT  PKGV LT   L  SV+    
Sbjct: 153 PDGCLHFSELTQADENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVD 212
Query: 192 -NIKSVYKLTESDSTVIVLPLFHVHGMXXXXXXXXXXXXXXXXXXXGRFSASTFWQDMIK 250
            +  ++Y  +E D  + VLP+FH++ +                    +F   +    + K
Sbjct: 213 GDNPNLYFHSE-DVILCVLPMFHIYALNSIMLCGLRVGAPILIMP--KFEIGSLLGLIEK 269
Query: 251 YNATWYTAVPTIHQIV-----LDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGA 305
           Y  +    VP +   +     LD+H          LR I+S  A L   +   +   F  
Sbjct: 270 YKVSIAPVVPPVMMSIAKSPDLDKHDLS------SLRMIKSGGAPLGKELEDTVRAKFPQ 323
Query: 306 PVL-EAYAMTEATHLMSSNPLPEDGPH--KPGSVGRPV-GQEIAILD-EIGVPQEGGAKG 360
             L + Y MTEA  +++        P   KPG+ G  V   E+ I+D E G        G
Sbjct: 324 ARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPG 383
Query: 361 EVCIRGPNVTKGYKNNPEA-NKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
           E+CIRG  + KGY N+PEA +++    GW HTGDIGY D D  L +V R+KELI   G
Sbjct: 384 EICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKG 441

>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549

Iteration: 1
 Score =  110 bits (275), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 113/438 (25%), Positives = 189/438 (43%), Gaps = 34/438 (7%)
Query: 4   VTLIGLLNQVIDQFSSKRAL-SVSGKF------DLTYSRIHELVERAASRLVAAGINAGD 56
           ++L   ++   ++F  K A+ S   KF         +  I E+ ++ AS +   G+  G+
Sbjct: 19  ISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESXNFLEICEVTKKLASGISRKGVRKGE 78
Query: 57  VVALTFPNTVEFVIMFLAVIRXXXXXXXXXXXYTPDEFEFYLSDSESKLLLTPAEGNXXX 116
            V +  PN++++V    A+ R           Y   E E  L+DSE+  L+  +      
Sbjct: 79  HVGVCIPNSIDYVXTIYALWRVAATPVPINPXYKSFELEHILNDSEATTLVVHSXLYENF 138
Query: 117 XXXXSKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRP 176
                K  +        + +S   +  + SE   N      N   DVAL  +T GTT  P
Sbjct: 139 KPVLEKTGVERVFVVGGEVNSLSEVXDSGSEDFENV---KVNPEEDVALIPYTGGTTGXP 195
Query: 177 KGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMXXXXXXXXXXXXXXXXXXX 236
           KGV LT  NLAA+   +     L+  D+ V   P FH                       
Sbjct: 196 KGVXLTHFNLAANALQLAVATGLSHXDTIVGCXPXFH---SAEFGLVNLXVTVGNEYVVX 252
Query: 237 GRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPV-YPKLRFIRSCSASLAPVI 295
           G F+     +++ KY  T+  AVP    ++++   +  +   +  L+   + +  +AP +
Sbjct: 253 GXFNQEXLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWPVAPAL 312
Query: 296 LSRL----EEAFGAPVL---EAYAMTEATHLMSSN-PLPEDGPHKPGSVGRPVGQEIAIL 347
           + +L     E    P L   + +  TEA   +++N PL  D     G     +  ++  L
Sbjct: 313 VEKLLKLAAEKCNNPRLRHNQIWGXTEACPXVTTNPPLRLDKSTTQGVPXSDIELKVISL 372
Query: 348 D---EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFG-----WFHTGDIGYFDS 399
           +   E+GV    G  GE+ IRGPN+ KGY    + N+  + +      +F TGD+G+ D 
Sbjct: 373 EDGRELGV----GESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDE 428
Query: 400 DGYLHLVGRIKELINRGG 417
           +G+LH   R+KE+I   G
Sbjct: 429 EGFLHFQDRVKEVIKYKG 446

>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582

Iteration: 1
 Score =  110 bits (275), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 105/409 (25%), Positives = 166/409 (40%), Gaps = 32/409 (7%)
Query: 30  DLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRXXXXXXXXXXXY 89
           ++TYS   E+  R A  +   G+     +A+   N+++F +     +            Y
Sbjct: 84  NITYSEYFEMACRLAETMKRYGLGLQHHIAVCSENSLQFFMPVCGALFIGVGVAPTNDIY 143
Query: 90  TPDEFEFYLSDSESKLLLTPAEGNXXXXXXXSKLNISHATATL------LDADSELTLSL 143
              E    LS S+  ++               KL I      L      +   S  +   
Sbjct: 144 NERELYNSLSISQPTIVFCSKRALQKILGVQKKLPIIQKIVILDSREDYMGKQSMYSFIE 203
Query: 144 AHSESDTNAISKLTND---PSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKS-VY-- 197
           +H  +  N    + +     +  AL +++SG+T  PKGV LT  N+    S+ +  V+  
Sbjct: 204 SHLPAGFNEYDYIPDSFDRETATALIMNSSGSTGLPKGVELTHKNICVRFSHCRDPVFGN 263
Query: 198 KLTESDSTVIVLPLFHVHGMXXXXXXXXXXXXXXXXXXXGRFSASTFWQDMIKYNATWYT 257
           ++    + + V+P  H  GM                    RF    F + +  Y      
Sbjct: 264 QIIPDTAILTVIPFHHGFGMFTTLGYLTCGFRIVLMY---RFEEELFLRSLQDYKIQSAL 320
Query: 258 AVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAP-VLEAYAMTEA 316
            VPT+        +     +   L  I S  A LA  +   + + F  P + + Y +TE 
Sbjct: 321 LVPTLFSFFAKSTLVDKYDL-SNLHEIASGGAPLAKEVGEAVAKRFKLPGIRQGYGLTET 379
Query: 317 THLMSSNPLPEDGPHKPGSVGRPV---GQEIAILDE---IGVPQEGGAKGEVCIRGPNVT 370
           T  +   P   D   KPG+ G+ V     +I  LD    +GV Q    +GE+C++GP + 
Sbjct: 380 TSAIIITPRGRD--DKPGACGKVVPFFSAKIVDLDTGKTLGVNQ----RGELCVKGPMIM 433
Query: 371 KGYKNNPEANKSAFLF--GWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
           KGY NNPEA  SA +   GW H+GDI Y+D DGY  +V R+K LI   G
Sbjct: 434 KGYVNNPEAT-SALIDKDGWLHSGDIAYYDKDGYFFIVDRLKSLIKYKG 481

>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548

Iteration: 1
 Score =  108 bits (271), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 82/263 (31%), Positives = 125/263 (47%), Gaps = 14/263 (5%)
Query: 162 DVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKS-VY--KLTESDSTVIVLPLFHVHGMX 218
            VAL +++SG+T  PKGV LT  N+    S+ +  +Y  +++   + + V+P  H  GM 
Sbjct: 193 QVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMF 252
Query: 219 XXXXXXXXXXXXXXXXXXGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVY 278
                              +F   TF + +  Y  T    VPT+  I L++     +   
Sbjct: 253 TTLGYLICGFRVVMLT---KFDEETFLKTLQDYKCTSVILVPTLFAI-LNKSELLNKYDL 308
Query: 279 PKLRFIRSCSASLAPVILSRLEEAFGAP-VLEAYAMTEATHLMSSNPLPEDGPHKPGSVG 337
             L  I S  A L+  +   +   F  P V + Y +TE T  +   P   +G  KPG+ G
Sbjct: 309 SNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITP---EGDDKPGASG 365
Query: 338 RPVGQEIAILDEIGVPQEGGA--KGEVCIRGPNVTKGYKNNPEANKSAF-LFGWFHTGDI 394
           + V    A + ++   +  G   +GEVC++GP + KGY NNPEA K      GW HTGDI
Sbjct: 366 KVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDI 425
Query: 395 GYFDSDGYLHLVGRIKELINRGG 417
           GY+D + +  +V R+K LI   G
Sbjct: 426 GYYDEEKHFFIVDRLKSLIKYKG 448

>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score =  108 bits (271), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 82/263 (31%), Positives = 125/263 (47%), Gaps = 14/263 (5%)
Query: 162 DVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKS-VY--KLTESDSTVIVLPLFHVHGMX 218
            VAL +++SG+T  PKGV LT  N+    S+ +  +Y  +++   + + V+P  H  GM 
Sbjct: 193 QVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMF 252
Query: 219 XXXXXXXXXXXXXXXXXXGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVY 278
                              +F   TF + +  Y  T    VPT+  I L++     +   
Sbjct: 253 TTLGYLICGFRVVMLT---KFDEETFLKTLQDYKCTSVILVPTLFAI-LNKSELLNKYDL 308
Query: 279 PKLRFIRSCSASLAPVILSRLEEAFGAP-VLEAYAMTEATHLMSSNPLPEDGPHKPGSVG 337
             L  I S  A L+  +   +   F  P V + Y +TE T  +   P   +G  KPG+ G
Sbjct: 309 SNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITP---EGDDKPGASG 365
Query: 338 RPVGQEIAILDEIGVPQEGGA--KGEVCIRGPNVTKGYKNNPEANKSAF-LFGWFHTGDI 394
           + V    A + ++   +  G   +GEVC++GP + KGY NNPEA K      GW HTGDI
Sbjct: 366 KVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDI 425
Query: 395 GYFDSDGYLHLVGRIKELINRGG 417
           GY+D + +  +V R+K LI   G
Sbjct: 426 GYYDEEKHFFIVDRLKSLIKYKG 448

>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score =  108 bits (270), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 82/263 (31%), Positives = 125/263 (47%), Gaps = 14/263 (5%)
Query: 162 DVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKS-VY--KLTESDSTVIVLPLFHVHGMX 218
            VAL +++SG+T  PKGV LT  N+    S+ +  +Y  +++   + + V+P  H  GM 
Sbjct: 193 QVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMF 252
Query: 219 XXXXXXXXXXXXXXXXXXGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVY 278
                              +F   TF + +  Y  T    VPT+  I L++     +   
Sbjct: 253 TTLGYLICGFRVVMLT---KFDEETFLKTLQDYKCTNVILVPTLFAI-LNKSELLNKYDL 308
Query: 279 PKLRFIRSCSASLAPVILSRLEEAFGAP-VLEAYAMTEATHLMSSNPLPEDGPHKPGSVG 337
             L  I S  A L+  +   +   F  P V + Y +TE T  +   P   +G  KPG+ G
Sbjct: 309 SNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITP---EGDDKPGASG 365
Query: 338 RPVGQEIAILDEIGVPQEGGA--KGEVCIRGPNVTKGYKNNPEANKSAF-LFGWFHTGDI 394
           + V    A + ++   +  G   +GEVC++GP + KGY NNPEA K      GW HTGDI
Sbjct: 366 KVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDI 425
Query: 395 GYFDSDGYLHLVGRIKELINRGG 417
           GY+D + +  +V R+K LI   G
Sbjct: 426 GYYDEEKHFFIVDRLKSLIKYKG 448

>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979

Iteration: 1
 Score =  106 bits (265), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 122/428 (28%), Positives = 179/428 (41%), Gaps = 30/428 (7%)
Query: 12  QVIDQFSSKRALSVSGKFD--LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFV 69
           Q I +F++K  L ++G      TYS +H +  + A+     G+N  DVV L  PN  EFV
Sbjct: 69  QNISEFATKPCL-INGPTGHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFV 127
Query: 70  IMFLAVIRXXXXXXXXXXXYTPDEFEFYLSDSESKLLLT---------PAEGNXXXXXXX 120
           + FLA              +TP E       S +KL++T         P + +       
Sbjct: 128 LSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVC 187
Query: 121 SKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVP 180
              N S          +ELT S   +   +  I  +   P DV    ++SGTT  PKGV 
Sbjct: 188 IDDNESVPIPEGCLRFTELTQSTTEA---SEVIDSVEISPDDVVALPYSSGTTGLPKGVM 244
Query: 181 LTQNNLAASVSNI-----KSVYKLTESDSTVIVLPLFHVHGMXXXXXXXXXXXXXXXXXX 235
           LT   L  SV+        ++Y     D  + VLP+FH++ +                  
Sbjct: 245 LTHKGLVTSVAQQVDGENPNLY-FHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMP 303
Query: 236 XGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVI 295
             +F  +   + + +   T    VP I  + + +     +     +R ++S +A L   +
Sbjct: 304 --KFEINLLLELIQRCKVTVAPMVPPI-VLAIAKSSETEKYDLSSIRVVKSGAAPLGKEL 360
Query: 296 LSRLEEAF-GAPVLEAYAMTEATHL--MSSNPLPEDGPHKPGSVGRPV-GQEIAILD-EI 350
              +   F  A + + Y MTEA  +  MS     E  P K G+ G  V   E+ I+D + 
Sbjct: 361 EDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDT 420
Query: 351 GVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAF-LFGWFHTGDIGYFDSDGYLHLVGRI 409
           G        GE+CIRG  + KGY NNP A        GW HTGDIG  D D  L +V R+
Sbjct: 421 GDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRL 480
Query: 410 KELINRGG 417
           KELI   G
Sbjct: 481 KELIKYKG 488

>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550

Iteration: 1
 Score = 97.8 bits (242), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 96/414 (23%), Positives = 170/414 (41%), Gaps = 43/414 (10%)
Query: 30  DLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRXXXXXXXXXXXY 89
           ++TY+   E+  R A  +   G+N    + +   N+++F +  L  +            Y
Sbjct: 50  NITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIY 109
Query: 90  TPDEFEFYLSDSESKLLLTPAEGNXXXXXXXSKLNISHATATLLDADSE----------L 139
              E    ++ S+  ++    +G         KL I      ++D+ ++          +
Sbjct: 110 NERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKI-IIMDSKTDYQGFQSMYTFV 168
Query: 140 TLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVY-- 197
           T  L    ++ + + +  +    +AL +++SG+T  PKGV L         S+ +     
Sbjct: 169 TSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFG 228
Query: 198 -KLTESDSTVIVLPLFHVHGMXXXXXXXXXXXXXXXXXXXGRFSASTFWQDMIKYNATWY 256
            ++    + + V+P  H  GM                    RF    F + +  Y     
Sbjct: 229 NQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMY---RFEEELFLRSLQDYKIQSA 285
Query: 257 TAVPTIHQI-----VLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAP-VLEA 310
             VPT+        ++D++          L  I S  A L+  +   + + F  P + + 
Sbjct: 286 LLVPTLFSFFAKSTLIDKYDLS------NLHEIASGGAPLSKEVGEAVAKRFHLPGIRQG 339
Query: 311 YAMTEATHLMSSNPLPEDGPHKPGSVGRPV---GQEIAILDE---IGVPQEGGAKGEVCI 364
           Y +TE T  +   P   +G  KPG+VG+ V     ++  LD    +GV Q    +GE+C+
Sbjct: 340 YGLTETTSAILITP---EGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQ----RGELCV 392
Query: 365 RGPNVTKGYKNNPEANKSAF-LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
           RGP +  GY NNPEA  +     GW H+GDI Y+D D +  +V R+K LI   G
Sbjct: 393 RGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKG 446

>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555

Iteration: 1
 Score = 97.8 bits (242), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 96/414 (23%), Positives = 170/414 (41%), Gaps = 43/414 (10%)
Query: 30  DLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRXXXXXXXXXXXY 89
           ++TY+   E+  R A  +   G+N    + +   N+++F +  L  +            Y
Sbjct: 55  NITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIY 114
Query: 90  TPDEFEFYLSDSESKLLLTPAEGNXXXXXXXSKLNISHATATLLDADSE----------L 139
              E    ++ S+  ++    +G         KL I      ++D+ ++          +
Sbjct: 115 NERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKI-IIMDSKTDYQGFQSMYTFV 173
Query: 140 TLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVY-- 197
           T  L    ++ + + +  +    +AL +++SG+T  PKGV L         S+ +     
Sbjct: 174 TSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFG 233
Query: 198 -KLTESDSTVIVLPLFHVHGMXXXXXXXXXXXXXXXXXXXGRFSASTFWQDMIKYNATWY 256
            ++    + + V+P  H  GM                    RF    F + +  Y     
Sbjct: 234 NQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMY---RFEEELFLRSLQDYKIQSA 290
Query: 257 TAVPTIHQI-----VLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAP-VLEA 310
             VPT+        ++D++          L  I S  A L+  +   + + F  P + + 
Sbjct: 291 LLVPTLFSFFAKSTLIDKYDLS------NLHEIASGGAPLSKEVGEAVAKRFHLPGIRQG 344
Query: 311 YAMTEATHLMSSNPLPEDGPHKPGSVGRPV---GQEIAILDE---IGVPQEGGAKGEVCI 364
           Y +TE T  +   P   +G  KPG+VG+ V     ++  LD    +GV Q    +GE+C+
Sbjct: 345 YGLTETTSAILITP---EGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQ----RGELCV 397
Query: 365 RGPNVTKGYKNNPEANKSAF-LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
           RGP +  GY NNPEA  +     GW H+GDI Y+D D +  +V R+K LI   G
Sbjct: 398 RGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKG 451

>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551

Iteration: 1
 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 96/414 (23%), Positives = 170/414 (41%), Gaps = 43/414 (10%)
Query: 30  DLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRXXXXXXXXXXXY 89
           ++TY+   E+  R A  +   G+N    + +   N+++F +  L  +            Y
Sbjct: 50  NITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIY 109
Query: 90  TPDEFEFYLSDSESKLLLTPAEGNXXXXXXXSKLNISHATATLLDADSE----------L 139
              E    ++ S+  ++    +G         KL I      ++D+ ++          +
Sbjct: 110 NERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKI-IIMDSKTDYQGFQSMYTFV 168
Query: 140 TLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVY-- 197
           T  L    ++ + + +  +    +AL +++SG+T  PKGV L         S+ +     
Sbjct: 169 TSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFG 228
Query: 198 -KLTESDSTVIVLPLFHVHGMXXXXXXXXXXXXXXXXXXXGRFSASTFWQDMIKYNATWY 256
            ++    + + V+P  H  GM                    RF    F + +  Y     
Sbjct: 229 NQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMY---RFEEELFLRSLQDYKIQSA 285
Query: 257 TAVPTIHQI-----VLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAP-VLEA 310
             VPT+        ++D++          L  I S  A L+  +   + + F  P + + 
Sbjct: 286 LLVPTLFSFFAKSTLIDKYDLS------NLHEIASGGAPLSKEVGEAVAKRFHLPGIRQG 339
Query: 311 YAMTEATHLMSSNPLPEDGPHKPGSVGRPV---GQEIAILDE---IGVPQEGGAKGEVCI 364
           Y +TE T  +   P   +G  KPG+VG+ V     ++  LD    +GV Q    +GE+C+
Sbjct: 340 YGLTETTSAILITP---EGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQ----RGELCV 392
Query: 365 RGPNVTKGYKNNPEANKSAF-LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
           RGP +  GY NNPEA  +     GW H+GDI Y+D D +  +V R+K LI   G
Sbjct: 393 RGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKG 446

>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541

Iteration: 1
 Score = 96.7 bits (239), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 105/413 (25%), Positives = 171/413 (41%), Gaps = 30/413 (7%)
Query: 32  TYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRXXXXXXXXXXXYTP 91
           TY+ +++   R    L A G+  GD VA    N    +  + AV              +P
Sbjct: 49  TYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSP 108
Query: 92  DEFEFYLSDSESKLLLTPAEGNXXXXXXXSKLNISHATATLLDADSELTLSLAHSESDTN 151
            E  + L+ +E K+LL   + N        +  +      ++  +      LA+ E+   
Sbjct: 109 KEIAYILNHAEDKVLLF--DPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGE 166
Query: 152 AISKLTNDPSDVALFLHTSGTTSRPKGV-----PLTQNNLAASVSNIKSVYKLTESDSTV 206
               +           +T+GTT  PKGV      L  ++LAAS+ +  +   L+E D  +
Sbjct: 167 EADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTA---LSEKDVVL 223
Query: 207 IVLPLFHVHGMXXXXXXXXXXXXXXXXXXXGRFSASTFWQDMIKYNATWYTAVPTIHQIV 266
            V+P+FHV+                      R   ++  +       T+   VPT+   +
Sbjct: 224 PVVPMFHVNAWCLPYAATLVGAKQVLPGP--RLDPASLVELFDGEGVTFTAGVPTVWLAL 281
Query: 267 LDRHVAKPEPVYPKLRFIRS--CSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNP 324
            D      E    +L+ +R      S AP  L    E  G  V + Y +TE + ++  N 
Sbjct: 282 ADYL----ESTGHRLKTLRRLVVGGSAAPRSLIARFERMGVEVRQGYGLTETSPVVVQNF 337
Query: 325 LP--------EDGPHKPGSVGRPVGQ-EIAILDEIG--VPQEGGAKGEVCIRGPNVTKGY 373
           +         E+        G P+    + + DE G  VP++G A GEV ++GP +T GY
Sbjct: 338 VKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGY 397
Query: 374 KNNPEANKSAFL-FGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISL 425
             N EA +SA    G+F TGDI  +D +GY+ +  R+K+LI  GG    S+ L
Sbjct: 398 YGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDL 450

>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter Baumannii Bound To 5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine Length = 544

Iteration: 1
 Score = 96.7 bits (239), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 92/401 (22%), Positives = 161/401 (40%), Gaps = 12/401 (2%)
Query: 25  VSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRXXXXXXX 84
           + G+  L+Y  +  L    A+RL   G+  GD   +  PN  EF I+F A+++       
Sbjct: 50  ICGERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLN 109
Query: 85  XXXXYTPDEFEFYLSDSESKLLLTPAE----GNXXXXXXXSKLNISHATATLLDADSELT 140
               +   E   ++   + KLL+   +     N         +N+S     +L+  +   
Sbjct: 110 ALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATDF 169
Query: 141 LSLAHSESDTNAISKLTNDPSD-VALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKL 199
             L   E+        ++ P+D VA F  + G+T  PK +P T N+   SV     +  L
Sbjct: 170 GLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGL 229
Query: 200 TESDSTVIVLPLFHVHGMXXXXXXXXXXXXXXXXXXXGRFSASTFWQDMIKYNATWYTAV 259
             +   +  LP  H   +                        + F   + ++     + V
Sbjct: 230 NSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAPNPEPLNCF-SIIQRHQVNMASLV 288
Query: 260 PTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHL 319
           P+   + L++  A+ +     L+ ++   AS    +  ++ E     + + + M E   L
Sbjct: 289 PSAVIMWLEK-AAQYKDQIQSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEG--L 345
Query: 320 MSSNPLPEDGPHKPGSVGRPVG--QEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNP 377
           ++   L +       + GRP+    EI I+DE       G  G +  RGP    GY  +P
Sbjct: 346 VNYTRLDDSDEQIFTTQGRPISSDDEIKIVDEQYREVPEGEIGMLATRGPYTFCGYYQSP 405
Query: 378 EANKSAF-LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
           E N   F    ++++GD+     DG L +VGRIK+ INRGG
Sbjct: 406 EHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGG 446

>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555

Iteration: 1
 Score = 96.3 bits (238), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 97/409 (23%), Positives = 170/409 (41%), Gaps = 33/409 (8%)
Query: 30  DLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRXXXXXXXXXXXY 89
           ++TY+   E+  R A  +   G+N    + ++  N+++F +  L  +            Y
Sbjct: 55  NITYAEYFEMSVRLAEAMKRYGLNTNHRIVVSSENSLQFFMPVLGALFIGVAVAPANDCY 114
Query: 90  TPDEFEFYLSDSESKLLLTPAEGNXXXXXXXSKLNISHATATLLDADSE----------L 139
              E    ++ S+  ++    +G         KL I      ++D+ ++          +
Sbjct: 115 NERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKI-IIMDSKTDYQGFQSMYTFV 173
Query: 140 TLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVY-- 197
           T  L    ++ + + +  +    +AL +++SG+T  PKGV L    LA   S+ +     
Sbjct: 174 TSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRALAVRFSHARDPIFG 233
Query: 198 -KLTESDSTVIVLPLFHVHGMXXXXXXXXXXXXXXXXXXXGRFSASTFWQDMIKYNATWY 256
            ++    + + V+P  H  GM                    RF    F + +  Y     
Sbjct: 234 NQIAPDTAILSVVPFHHGFGMFTTLGYLISGFRVVLMY---RFEEELFLRSLQDYKIQSA 290
Query: 257 TAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAP-VLEAYAMTE 315
             VPT+    L +     +     L  I S  A L+  +   + + F  P + + Y +TE
Sbjct: 291 LLVPTLFSF-LAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTE 349
Query: 316 ATHLMSSNPLPEDGPHKPGSVGRPV---GQEIAILDE---IGVPQEGGAKGEVCIRGPNV 369
            T  +   P  +D   KPG+VG+ V     ++  LD    +GV Q    +GE+ +RGP +
Sbjct: 350 TTSAILITPKGDD---KPGAVGKVVPFFEAKVVDLDTGKTLGVNQ----RGELSVRGPMI 402
Query: 370 TKGYKNNPEANKSAF-LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
             GY NNPEA  +     GW H+GDI Y+D D +  +V R+K LI   G
Sbjct: 403 MSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKG 451

>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529

Iteration: 1
 Score = 95.5 bits (236), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 96/397 (24%), Positives = 162/397 (40%), Gaps = 19/397 (4%)
Query: 32  TYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRXXXXXXXXXXXYTP 91
           TY  + E   R AS L   G++  + + L   +TV   + FL  +             TP
Sbjct: 50  TYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTP 109
Query: 92  DEFEFYLSDSESKLLLTPAEGNXXXXXXXSKLNISHATATLLDA---DSELTLSLAHSE- 147
            ++ + L+ S ++ ++  A G        +  +  H    L+ +   +SE  L+    E 
Sbjct: 110 ADYVYMLTHSHARAVI--ASGALVQNVTQALESAEHDGCQLIVSQPRESEPRLAPLFEEL 167
Query: 148 --SDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVS-NIKSVYKLTESDS 204
             +   A         D+A +L++SG+T +PKG   T  NL  +     K +  + E+D 
Sbjct: 168 IDAAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDV 227
Query: 205 TVIVLPLFHVHGMXXXXXXXXXXXXXXXXXXXGRFSASTFWQDMIKYNATWYTAVPTIHQ 264
                 LF  +G+                    R +A   +  ++++  T +  VPT++ 
Sbjct: 228 VFSAAKLFFAYGLGNGLTFPLSVGATAILMAE-RPTADAIFARLVEHRPTVFYGVPTLYA 286
Query: 265 IVLDRHVAKPEPVYPK--LRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSS 322
            +L   V+   P      +R   S   +L   I  R    FG  +L+    TE  H+  S
Sbjct: 287 NML---VSPNLPARADVAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLS 343
Query: 323 NPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANK 381
           N     G  + G+ GRPV G EI + DE G     G  G++ I+GP+    Y NN E ++
Sbjct: 344 N---RAGAVEYGTTGRPVPGYEIELRDEAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSR 400
Query: 382 SAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGN 418
           + FL  W  +GD      +G     GR  +++   G 
Sbjct: 401 ATFLGEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQ 437

>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing The Ente Adenylation Domain And Entb Aryl-Carrier Protein From Enterobactin Biosynthesis Length = 617

Iteration: 1
 Score = 93.2 bits (230), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 93/405 (22%), Positives = 162/405 (40%), Gaps = 18/405 (4%)
Query: 25  VSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRXXXXXXX 84
           + G+  L+Y  +++  +  A  L   GI  G+   +   N  E  I F A+++       
Sbjct: 45  IDGERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVL 104
Query: 85  XXXXYTPDEFEFYLSDSESKLLLTPAE-----GNXXXXXXXSKLNISHATATLLDA-DSE 138
               +   E   Y S  E  LL+   +     G+       ++ +       L D+ +  
Sbjct: 105 ALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGEHN 164
Query: 139 LTLSLAHSESDTNAISKLTNDPSD-VALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVY 197
           L  ++ H   D  A    T  P+D VA F  + GTT  PK +P T N+   SV     + 
Sbjct: 165 LQDAINHPAEDFTA----TPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC 220
Query: 198 KLTESDSTVIVLPLFHVHGMXXXXXXXXXXXXXXXXXXXGRFSASTFWQDMIKYNATWYT 257
           + T+    +  +P  H + M                      SA+  +  + K+      
Sbjct: 221 QFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADP-SATLCFPLIEKHQVNVTA 279
Query: 258 AVPTIHQIVLDRHV-AKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEA 316
            VP    + L   +  +       L+ ++   A L+  + +R+    G  + + + M E 
Sbjct: 280 LVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEG 339
Query: 317 THLMSSNPLPEDGPHKPGSVGRPV--GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYK 374
             L++   L +       + G P+    E+ + D  G P   G  G +  RGP   +GY 
Sbjct: 340 --LVNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAEGNPLPQGEVGRLMTRGPYTFRGYY 397
Query: 375 NNPEANKSAF-LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGN 418
            +P+ N SAF   G++ +GD+   D +GY+ + GR K+ INRGG 
Sbjct: 398 KSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGE 442

>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580

Iteration: 1
 Score = 92.8 bits (229), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 96/421 (22%), Positives = 163/421 (38%), Gaps = 59/421 (14%)
Query: 31  LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRXXXXXXXXXXXYT 90
            T+  +    ++AA+  V  GI  GD V LT  +  +F    L + +             
Sbjct: 87  FTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHMLK 146
Query: 91  PDEFEFYLSDSESKLLLTPAEGNXXXXXXXSKLNISHATAT----------------LLD 134
             +  + +  +  K+++  AE +        +++ +HA                    +D
Sbjct: 147 TRDIVYRIEKAGLKMIVCIAEDDVP-----EQVDEAHAECGDIPLKKAKVGGDVLEGWID 201
Query: 135 ADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGV------PLTQNNLAA 188
              EL  S    E  T  +S       D+ L   +SGT   PK V      PL     A 
Sbjct: 202 FRKELEESSPIFERPTGEVSTKN---EDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAK 258
Query: 189 SVSNIKSV---YKLTESDSTVIVLPLFHVHGMXXXXXXXXXXXXXXXXXXXGRFSASTFW 245
              N++     Y + +S     V    +   +                    RF A    
Sbjct: 259 YWQNVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDYD---------RFEAKNML 309
Query: 246 QDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGA 305
           +   KY  T + A PTI++ ++   ++     +  L++       L P + +R  E  G 
Sbjct: 310 EKASKYGVTTFCAPPTIYRFLIKEDLSHYN--FSTLKYAVVAGEPLNPEVFNRFLEFTGI 367
Query: 306 PVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCI 364
            ++E +  TE    +++ P  E    KPGS+G+P  G +I ++D  G   E G +GE+ I
Sbjct: 368 KLMEGFGQTETVVTIATFPWMEP---KPGSIGKPTPGYKIELMDRDGRLCEVGEEGEIVI 424
Query: 365 RGPNVTKG--------YKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRG 416
              N  +G        Y  +PE  +  +  G++HTGD+ + D DGYL  VGR  ++I   
Sbjct: 425 ---NTMEGKPVGLFVHYGKDPERTEETWHDGYYHTGDMAWMDEDGYLWFVGRADDIIKTS 481
Query: 417 G 417
           G
Sbjct: 482 G 482

>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation Length = 652

Iteration: 1
 Score = 76.6 bits (187), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 99/419 (23%), Positives = 158/419 (37%), Gaps = 32/419 (7%)
Query: 31  LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRXXXXXXXXXXXYT 90
           ++Y  +H  V R A+ L+  GI  GDVVA+  P   E  +  LA  R           ++
Sbjct: 108 ISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFS 167
Query: 91  PDEFEFYLSDSESKLLLTPAEGNXXXXXXXSKLNISHATATLLDADSELTLSLAHSESDT 150
           P+     + DS S+L++T  EG         K N+  A         E  + L  + SD 
Sbjct: 168 PEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDI 227
Query: 151 NA-----------ISKLTND-------PSDVALFLHTSGTTSRPKGVPLTQNN-LAASVS 191
           +            I K + +         D    L+TSG+T +PKGV  T    L  + +
Sbjct: 228 DWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAT 287
Query: 192 NIKSVYKLTESDSTVIVLPLFHV--HGMXXXXXXXXXXXXXXXXXXXGRFSASTFWQDMI 249
             K V+     D       +  V  H                        + +   Q + 
Sbjct: 288 TFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVD 347
Query: 250 KYNAT-WYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFG---A 305
           K+     YTA   I  ++ +   A        LR + S    + P       +  G    
Sbjct: 348 KHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSAGEPINPEAWEWYWKKIGKEKC 407
Query: 306 PVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCI 364
           PV++ +  TE    M + PLP     K GS  RP  G + A++D  G PQEG  +G + I
Sbjct: 408 PVVDTWWQTETGGFMIT-PLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVI 466
Query: 365 --RGPNVTKGYKNNPEANKSAFLFGW---FHTGDIGYFDSDGYLHLVGRIKELINRGGN 418
               P   +    + E  +  +   +   + +GD    D DGY  + GR+ +++N  G+
Sbjct: 467 TDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGH 525

>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation Length = 652

Iteration: 1
 Score = 76.6 bits (187), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 99/419 (23%), Positives = 158/419 (37%), Gaps = 32/419 (7%)
Query: 31  LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRXXXXXXXXXXXYT 90
           ++Y  +H  V R A+ L+  GI  GDVVA+  P   E  +  LA  R           ++
Sbjct: 108 ISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFS 167
Query: 91  PDEFEFYLSDSESKLLLTPAEGNXXXXXXXSKLNISHATATLLDADSELTLSLAHSESDT 150
           P+     + DS S+L++T  EG         K N+  A         E  + L  + SD 
Sbjct: 168 PEAVAGRIIDSSSRLVITADEGVRAGASIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDI 227
Query: 151 NA-----------ISKLTND-------PSDVALFLHTSGTTSRPKGVPLTQNN-LAASVS 191
           +            I K + +         D    L+TSG+T +PKGV  T    L  + +
Sbjct: 228 DWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAT 287
Query: 192 NIKSVYKLTESDSTVIVLPLFHV--HGMXXXXXXXXXXXXXXXXXXXGRFSASTFWQDMI 249
             K V+     D       +  V  H                        + +   Q + 
Sbjct: 288 TFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVD 347
Query: 250 KYNAT-WYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFG---A 305
           K+     YTA   I  ++ +   A        LR + S    + P       +  G    
Sbjct: 348 KHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKC 407
Query: 306 PVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCI 364
           PV++ +  TE    M + PLP     K GS  RP  G + A++D  G PQEG  +G + I
Sbjct: 408 PVVDTWWQTETGGFMIT-PLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVI 466
Query: 365 --RGPNVTKGYKNNPEANKSAFLFGW---FHTGDIGYFDSDGYLHLVGRIKELINRGGN 418
               P   +    + E  +  +   +   + +GD    D DGY  + GR+ +++N  G+
Sbjct: 467 TDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGH 525

>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609 Length = 652

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 99/419 (23%), Positives = 158/419 (37%), Gaps = 32/419 (7%)
Query: 31  LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRXXXXXXXXXXXYT 90
           ++Y  +H  V R A+ L+  GI  GDVVA+  P   E  +  LA  R           ++
Sbjct: 108 ISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFS 167
Query: 91  PDEFEFYLSDSESKLLLTPAEGNXXXXXXXSKLNISHATATLLDADSELTLSLAHSESDT 150
           P+     + DS S+L++T  EG         K N+  A         E  + L  + SD 
Sbjct: 168 PEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDI 227
Query: 151 NA-----------ISKLTND-------PSDVALFLHTSGTTSRPKGVPLTQNN-LAASVS 191
           +            I K + +         D    L+TSG+T +PKGV  T    L  + +
Sbjct: 228 DWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAT 287
Query: 192 NIKSVYKLTESDSTVIVLPLFHV--HGMXXXXXXXXXXXXXXXXXXXGRFSASTFWQDMI 249
             K V+     D       +  V  H                        + +   Q + 
Sbjct: 288 TFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVD 347
Query: 250 KYNAT-WYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFG---A 305
           K+     YTA   I  ++ +   A        LR + S    + P       +  G    
Sbjct: 348 KHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKC 407
Query: 306 PVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCI 364
           PV++ +  TE    M + PLP     K GS  RP  G + A++D  G PQEG  +G + I
Sbjct: 408 PVVDTWWQTETGGFMIT-PLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVI 466
Query: 365 --RGPNVTKGYKNNPEANKSAFLFGW---FHTGDIGYFDSDGYLHLVGRIKELINRGGN 418
               P   +    + E  +  +   +   + +GD    D DGY  + GR+ +++N  G+
Sbjct: 467 TDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGH 525

>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation Length = 652

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 99/419 (23%), Positives = 158/419 (37%), Gaps = 32/419 (7%)
Query: 31  LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRXXXXXXXXXXXYT 90
           ++Y  +H  V R A+ L+  GI  GDVVA+  P   E  +  LA  R           ++
Sbjct: 108 ISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFS 167
Query: 91  PDEFEFYLSDSESKLLLTPAEGNXXXXXXXSKLNISHATATLLDADSELTLSLAHSESDT 150
           P+     + DS S+L++T  EG         K N+  A         E  + L  + SD 
Sbjct: 168 PEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDI 227
Query: 151 NA-----------ISKLTND-------PSDVALFLHTSGTTSRPKGVPLTQNN-LAASVS 191
           +            I K + +         D    L+TSG+T +PKGV  T    L  + +
Sbjct: 228 DWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAT 287
Query: 192 NIKSVYKLTESDSTVIVLPLFHV--HGMXXXXXXXXXXXXXXXXXXXGRFSASTFWQDMI 249
             K V+     D       +  V  H                        + +   Q + 
Sbjct: 288 TFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVD 347
Query: 250 KYNAT-WYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFG---A 305
           K+     YTA   I  ++ +   A        LR + S    + P       +  G    
Sbjct: 348 KHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKC 407
Query: 306 PVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCI 364
           PV++ +  TE    M + PLP     K GS  RP  G + A++D  G PQEG  +G + I
Sbjct: 408 PVVDTWWQTETGGFMIT-PLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVI 466
Query: 365 --RGPNVTKGYKNNPEANKSAFLFGW---FHTGDIGYFDSDGYLHLVGRIKELINRGGN 418
               P   +    + E  +  +   +   + +GD    D DGY  + GR+ +++N  G+
Sbjct: 467 TDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGH 525

>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And Coa Bound Length = 652

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 99/419 (23%), Positives = 158/419 (37%), Gaps = 32/419 (7%)
Query: 31  LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRXXXXXXXXXXXYT 90
           ++Y  +H  V R A+ L+  GI  GDVVA+  P   E  +  LA  R           ++
Sbjct: 108 ISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFS 167
Query: 91  PDEFEFYLSDSESKLLLTPAEGNXXXXXXXSKLNISHATATLLDADSELTLSLAHSESDT 150
           P+     + DS S+L++T  EG         K N+  A         E  + L  + SD 
Sbjct: 168 PEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDI 227
Query: 151 NA-----------ISKLTND-------PSDVALFLHTSGTTSRPKGVPLTQNN-LAASVS 191
           +            I K + +         D    L+TSG+T +PKGV  T    L  + +
Sbjct: 228 DWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAT 287
Query: 192 NIKSVYKLTESDSTVIVLPLFHV--HGMXXXXXXXXXXXXXXXXXXXGRFSASTFWQDMI 249
             K V+     D       +  V  H                        + +   Q + 
Sbjct: 288 TFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVD 347
Query: 250 KYNAT-WYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFG---A 305
           K+     YTA   I  ++ +   A        LR + S    + P       +  G    
Sbjct: 348 KHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKC 407
Query: 306 PVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCI 364
           PV++ +  TE    M + PLP     K GS  RP  G + A++D  G PQEG  +G + I
Sbjct: 408 PVVDTWWQTETGGFMIT-PLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVI 466
Query: 365 --RGPNVTKGYKNNPEANKSAFLFGW---FHTGDIGYFDSDGYLHLVGRIKELINRGGN 418
               P   +    + E  +  +   +   + +GD    D DGY  + GR+ +++N  G+
Sbjct: 467 TDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGH 525

>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation Length = 652

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 99/419 (23%), Positives = 158/419 (37%), Gaps = 32/419 (7%)
Query: 31  LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRXXXXXXXXXXXYT 90
           ++Y  +H  V R A+ L+  GI  GDVVA+  P   E  +  LA  R           ++
Sbjct: 108 ISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFS 167
Query: 91  PDEFEFYLSDSESKLLLTPAEGNXXXXXXXSKLNISHATATLLDADSELTLSLAHSESDT 150
           P+     + DS S+L++T  EG         K N+  A         E  + L  + SD 
Sbjct: 168 PEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDI 227
Query: 151 NA-----------ISKLTND-------PSDVALFLHTSGTTSRPKGVPLTQNN-LAASVS 191
           +            I K + +         D    L+TSG+T +PKGV  T    L  + +
Sbjct: 228 DWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAT 287
Query: 192 NIKSVYKLTESDSTVIVLPLFHV--HGMXXXXXXXXXXXXXXXXXXXGRFSASTFWQDMI 249
             K V+     D       +  V  H                        + +   Q + 
Sbjct: 288 TFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVD 347
Query: 250 KYNAT-WYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFG---A 305
           K+     YTA   I  ++ +   A        LR + S    + P       +  G    
Sbjct: 348 KHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKC 407
Query: 306 PVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCI 364
           PV++ +  TE    M + PLP     K GS  RP  G + A++D  G PQEG  +G + I
Sbjct: 408 PVVDTWWQTETGGFMIT-PLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVI 466
Query: 365 --RGPNVTKGYKNNPEANKSAFLFGW---FHTGDIGYFDSDGYLHLVGRIKELINRGGN 418
               P   +    + E  +  +   +   + +GD    D DGY  + GR+ +++N  G+
Sbjct: 467 TDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGH 525

>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation Length = 652

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 99/419 (23%), Positives = 158/419 (37%), Gaps = 32/419 (7%)
Query: 31  LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRXXXXXXXXXXXYT 90
           ++Y  +H  V R A+ L+  GI  GDVVA+  P   E  +  LA  R           ++
Sbjct: 108 ISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFS 167
Query: 91  PDEFEFYLSDSESKLLLTPAEGNXXXXXXXSKLNISHATATLLDADSELTLSLAHSESDT 150
           P+     + DS S+L++T  EG         K N+  A         E  + L  + SD 
Sbjct: 168 PEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDI 227
Query: 151 NA-----------ISKLTND-------PSDVALFLHTSGTTSRPKGVPLTQNN-LAASVS 191
           +            I K + +         D    L+TSG+T +PKGV  T    L  + +
Sbjct: 228 DWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAT 287
Query: 192 NIKSVYKLTESDSTVIVLPLFHV--HGMXXXXXXXXXXXXXXXXXXXGRFSASTFWQDMI 249
             K V+     D       +  V  H                        + +   Q + 
Sbjct: 288 TFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVD 347
Query: 250 KYNAT-WYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFG---A 305
           K+     YTA   I  ++ +   A        LR + S    + P       +  G    
Sbjct: 348 KHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKC 407
Query: 306 PVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCI 364
           PV++ +  TE    M + PLP     K GS  RP  G + A++D  G PQEG  +G + I
Sbjct: 408 PVVDTWWQTETGGFMIT-PLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVI 466
Query: 365 --RGPNVTKGYKNNPEANKSAFLFGW---FHTGDIGYFDSDGYLHLVGRIKELINRGGN 418
               P   +    + E  +  +   +   + +GD    D DGY  + GR+ +++N  G+
Sbjct: 467 TDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGH 525

>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 92/425 (21%), Positives = 161/425 (37%), Gaps = 19/425 (4%)
Query: 3   GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTF 62
           G T   LL     ++  + A++  G    +Y  +    +R A+     GI   D V +  
Sbjct: 24  GETFGDLLRDRAAKYGDRIAITC-GNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQL 82
Query: 63  PNTVEFVIMFLAVIRXXXXXXXXXXXYTPDEFEFYLSDSESKLLLTPA-----EGNXXXX 117
           PN  EF  +  A+ R           +   E  ++   +E+   + P      +      
Sbjct: 83  PNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLAR 142
Query: 118 XXXSKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPK 177
              SKL          +A+  L L   H+E     +       SDVA    + G+T   K
Sbjct: 143 QVQSKLPTLKNIIVAGEAEEFLPLEDLHTEP----VKLPEVKSSDVAFLQLSGGSTGLSK 198
Query: 178 GVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMXXXXXXXXXXXXXXXXXXXG 237
            +P T ++   S+     V  L  S   +  LP+ H + +                    
Sbjct: 199 LIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPS 258
Query: 238 RFSASTFWQDMIKYNATWYTA-VPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVIL 296
                 F   +I+      TA VP +  + +D   ++ + +   L+ ++   A  +    
Sbjct: 259 PSPDDAF--PLIEREKVTITALVPPLAMVWMDAASSRRDDL-SSLQVLQVGGAKFSAEAA 315
Query: 297 SRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPVG--QEIAILDEIGVPQ 354
            R++  FG  + + + M E   L++   L +       + G+P+    E  + D+     
Sbjct: 316 RRVKAVFGCTLQQVFGMAEG--LVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDV 373
Query: 355 EGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF-GWFHTGDIGYFDSDGYLHLVGRIKELI 413
           + G  G +  RGP   +GY    E N ++F   G++ TGDI     DGY+ + GR K+ I
Sbjct: 374 KPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQI 433
Query: 414 NRGGN 418
           NRGG 
Sbjct: 434 NRGGE 438

>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501

Iteration: 1
 Score = 72.8 bits (177), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 109/257 (42%), Gaps = 16/257 (6%)
Query: 162 DVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMXXXX 221
           D+A  + TSGTT   K VP T  N  AS    K         + + VLP++H+ G+    
Sbjct: 164 DIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGL---S 220
Query: 222 XXXXXXXXXXXXXXXGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKL 281
                           +F+A      +     T  + VP     ++ + + +P  +   L
Sbjct: 221 VLLRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPYNLQKIL 280
Query: 282 RFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTE-ATHLMSSNPLPEDGPHKPGSVGRPV 340
                 SA++    L      +  P+  ++ MTE  +  +++   PE    +P +VG P 
Sbjct: 281 LGGAKLSATMIETALQ-----YNLPIYNSFGMTETCSQFLTAT--PEMLHARPDTVGMPS 333
Query: 341 GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSD 400
                +  +I  P + G  GE+ I+G NV  GY   P      F  G+F+TGDI   D +
Sbjct: 334 AN---VDVKIKNPNKEG-HGELMIKGANVMNGYL-YPTDLTGTFENGYFNTGDIAEIDHE 388
Query: 401 GYLHLVGRIKELINRGG 417
           GY+ +  R K+LI  GG
Sbjct: 389 GYVMIYDRRKDLIISGG 405

>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate Ligases From E. Coli And L. Pneumophila Length = 583

Iteration: 1
 Score = 71.6 bits (174), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 110/298 (36%), Gaps = 39/298 (13%)
Query: 160 PSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIK-SVYKLTESDSTVIVLPLFHVHGMX 218
           P+D+A   +TSG+T  P+GV +T   + A++  I     KL   D  V  LP +H  G+ 
Sbjct: 174 PNDIAYLQYTSGSTRFPRGVIITHREVXANLRAISHDGIKLRPGDRCVSWLPFYHDXGLV 233
Query: 219 XXXXXXXXXXXXXXXXXXGRFSASTF-WQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPV 277
                               F+     W  +I  N    +  P     +  R V + +  
Sbjct: 234 GFLLTPVATQLSVDYLRTQDFAXRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKDLA 293
Query: 278 YPKLRFIRSCSASLAPV---ILSRLEEAFGAPVLE------AYAMTEATHLMS------- 321
              L   R       P+    L +  E F     +       Y + E    +S       
Sbjct: 294 ELDLSCWRVAGIGAEPISAEQLHQFAECFRQVNFDNKTFXPCYGLAENALAVSFSDEASG 353
Query: 322 --SNPLPED------GPHKPGSVGRPVG-----------QEIAILDEIGVPQEGGAKGEV 362
              N +  D          PG+  R V              I I +E G P      G +
Sbjct: 354 VVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGIEIRNEAGXPVAERVVGHI 413
Query: 363 CIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKEL-INRGGNL 419
           CI GP++  GY  +  +       GW  TGD+GY   DGYL++ GRIK+L I RG N+
Sbjct: 414 CISGPSLXSGYFGDQVSQDEIAATGWLDTGDLGYL-LDGYLYVTGRIKDLIIIRGRNI 470

>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp Length = 539

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 91/425 (21%), Positives = 157/425 (36%), Gaps = 19/425 (4%)
Query: 3   GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTF 62
           G T   LL     ++  + A++  G    +Y  +    +R A+     GI   D V +  
Sbjct: 24  GETFGDLLRDRAAKYGDRIAITC-GNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQL 82
Query: 63  PNTVEFVIMFLAVIRXXXXXXXXXXXYTPDEFEFYLSDSESKLLLTPA-----EGNXXXX 117
           PN  EF  +  A+ R           +   E  ++   +E+   + P      +      
Sbjct: 83  PNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLAR 142
Query: 118 XXXSKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPK 177
              SKL          +A+  L L   H+E     +       SDVA    + G+T   K
Sbjct: 143 QVQSKLPTLKNIIVAGEAEEFLPLEDLHTEP----VKLPEVKSSDVAFLQLSGGSTGLSK 198
Query: 178 GVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMXXXXXXXXXXXXXXXXXXXG 237
            +P T ++   S+     V  L  S   +  LP  H + +                    
Sbjct: 199 LIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPXAHNYPLSSPGVLGVLYAGGRVVLSPS 258
Query: 238 RFSASTFWQDMIKYNATWYTA-VPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVIL 296
                 F   +I+      TA VP +  +  D   ++ + +   L+ ++   A  +    
Sbjct: 259 PSPDDAF--PLIEREKVTITALVPPLAXVWXDAASSRRDDL-SSLQVLQVGGAKFSAEAA 315
Query: 297 SRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPVG--QEIAILDEIGVPQ 354
            R++  FG  + + +   E   L++   L +       + G+P     E  + D+     
Sbjct: 316 RRVKAVFGCTLQQVFGXAEG--LVNYTRLDDPEEIIVNTQGKPXSPYDESRVWDDHDRDV 373
Query: 355 EGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF-GWFHTGDIGYFDSDGYLHLVGRIKELI 413
           + G  G +  RGP   +GY    E N ++F   G++ TGDI     DGY+ + GR K+ I
Sbjct: 374 KPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQI 433
Query: 414 NRGGN 418
           NRGG 
Sbjct: 434 NRGGE 438

>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1 In A Complex With Amp And Phenylalanine Length = 563

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 100/441 (22%), Positives = 176/441 (39%), Gaps = 54/441 (12%)
Query: 10  LNQVIDQFSSKRALSVS---GKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTV 66
           ++Q+ ++  SKR  +V+       LTY  ++    + A   +  GI    +V +    ++
Sbjct: 41  IHQLFEEQVSKRPNNVAIVCENEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSI 100
Query: 67  EFVIMFLAVIRXXXXXXXXXXXYTPDEFEFYLSDSESKLLLTPAEGNXXXXXXXSKLNIS 126
           +  I  LAV++           Y  +  ++ L DS++++LLT             + ++ 
Sbjct: 101 DLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLT-------------QKHLV 147
Query: 127 HATATLLDADSELTLSLAHSESDTNAISKLTN-----DPSDVALFLHTSGTTSRPKGVPL 181
           H     L  + +    +   E DT  I + TN       +D+A  ++TSGTT  PKG  L
Sbjct: 148 H-----LIHNIQFNGQVEIFEEDTIKIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTML 202
Query: 182 TQNNLAASVSNIKSVYK----LTESDSTVIVLPLFHVHGMXXXXXXXXXXXXXXXXXXXG 237
                   +SN+K  ++    +TE D       +     +                    
Sbjct: 203 EHK----GISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKDT 258
Query: 238 RFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILS 297
                 F Q + +   T  T  PT + + LD     PE +      I + SA+ +P +++
Sbjct: 259 INDFVKFEQYINQKEITVITLPPT-YVVHLD-----PERILSIQTLITAGSAT-SPSLVN 311
Query: 298 RLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEG 356
           + +E      + AY  TE T   ++    ++       +G P+   +I I+DE    +  
Sbjct: 312 KWKEK--VTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSV 369
Query: 357 GAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWF-------HTGDIGYFDSDGYLHLVGRI 409
           G  GE+CI G  + +GY   PE     F+   F        TGD   + SDG +  +GRI
Sbjct: 370 GEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRI 429
Query: 410 KELINRGGN---LHESISLFL 427
              +   G+   L E  S+ L
Sbjct: 430 DNQVKIRGHRVELEEVESILL 450

>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps) Adenylation Domains Length = 511

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 118/297 (39%), Gaps = 18/297 (6%)
Query: 127 HATATLLDADSELTLSLAHSESDTNAISKLTNDP----SDVALFLHTSGTTSRPKGVPLT 182
           HA    +DA  +   +++  E   N    ++ D      +    ++TSG+T  PKGV ++
Sbjct: 105 HAAGLSIDAVGQQIQTVSAEELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQIS 164
Query: 183 QNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMXXXXXXXXXXXXXXXXXXXGRFSAS 242
             NL +    I + + ++     +   P      +                         
Sbjct: 165 AANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTKDAVNKPK 224
Query: 243 TFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEA 302
             ++++ K     +T+ P+  Q+ L       + + P       C   L   +   L E 
Sbjct: 225 VLFEELKKSGLNVWTSTPSFVQMCL-MDPGFSQDLLPHADTFMFCGEVLPVSVAKALLER 283
Query: 303 F-GAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPVG-----QEIAILDEIGVPQEG 356
           F  A +   Y  TEAT  ++S  +  D   +  S+  PVG       I I+DE G P   
Sbjct: 284 FPKAKIFNTYGPTEATVAVTSVEITNDVISRSESL--PVGFAKPDMNIFIMDEEGQPLPE 341
Query: 357 GAKGEVCIRGPNVTKGYKNNPEANKSAFLF---GW-FHTGDIGYFDSDGYLHLVGRI 409
           G KGE+ I GP+V++GY   PE  + AF      W + TGD G F  DG +   GR+
Sbjct: 342 GEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAG-FIQDGQIFCQGRL 397

>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In Complex With Amp Length = 663

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 95/435 (21%), Positives = 170/435 (39%), Gaps = 57/435 (13%)
Query: 29  FDLTYSRIHELVERAASRLV-AAGINAGDVVALTFPNTVEFVIMFLAVIRXXXXXXXXXX 87
           + +TY  + E V + A  L  + G+  GD VA+  P   E +I  LA+ R          
Sbjct: 112 YSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFA 171
Query: 88  XYTPDEFEFYLSDSESKLLLTPAEGNXXXXXXXSKLNISHATATLLDADSELTL------ 141
            ++ +     ++D +SK+++T  E N       +K  +  A          L        
Sbjct: 172 GFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNP 231
Query: 142 SLA-HSESDTNAISKLTN----------DPSDVALFLHTSGTTSRPKGVP-LTQNNLAAS 189
           S+A H+  D +  ++             D  D    L+TSG+T  PKGV   T   L  +
Sbjct: 232 SVAFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGA 291
Query: 190 VSNIKSVYKLTESDS--TVIVLPLFHVHGMXXXXXXXXXXXXXXXXXXXGRFSASTFWQD 247
           +  ++  +   + D   T   +     H                        + S +W  
Sbjct: 292 LLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDI 351
Query: 248 MIKYNATWYTAVPTIHQIV-------LDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLE 300
           + ++  T +   PT  +++       ++ H  K       LR + S    +A  +     
Sbjct: 352 IDEHKVTQFYVAPTALRLLKRAGDSYIENHSLK------SLRCLGSVGEPIAAEVWEWYS 405
Query: 301 EAFGA---PVLEAYAMTEA-THLMSSNPLPED-GPHKPGSVGRPV-GQEIAILDEIGVPQ 354
           E  G    P+++ Y  TE+ +HL++  PL     P KPGS   P  G +  +LD    P 
Sbjct: 406 EKIGKNEIPIVDTYWQTESGSHLVT--PLAGGVTPMKPGSASFPFFGIDAVVLD----PN 459
Query: 355 EGG------AKGEVCIRG--PNVTKGYKNNPEANKSAFLF---GWFHTGDIGYFDSDGYL 403
            G       A+G + ++   P+  +    N +     +L    G++ TGD    D DGY+
Sbjct: 460 TGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYI 519
Query: 404 HLVGRIKELINRGGN 418
            ++GR+ +++N  G+
Sbjct: 520 WILGRVDDVVNVSGH 534

>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 92/419 (21%), Positives = 150/419 (35%), Gaps = 41/419 (9%)
Query: 22  ALSVSGK-FDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRXXX 80
           AL+V  +   LT++ +   VE  A+RL A G+     VA+  PN+ + VI  LA+ R   
Sbjct: 20  ALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGA 79
Query: 81  XXXXXXXXYTPDEFEFYLSDSESKLLLTPAEGNXXXXXXXSKLNISHATATLLDADSELT 140
                     P      L  +E   L+   E          ++    A A          
Sbjct: 80  ---------VPALLNPRLKSAELAELIKRGEMTAAVIAVGRQV----ADAIFQSGSGARI 126
Query: 141 LSLAHSESDTNA------ISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIK 194
           + L     D         I     +P+  A   +TSGTT  PK   + Q    + V  + 
Sbjct: 127 IFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMS 186
Query: 195 SVYKLTESDSTVIV--LPLFHVHGMXXXXXXXXXXXXXXXXXXXGRFSASTFWQDMIKYN 252
           +   L      V++  +PL+HV G                      F      Q + +  
Sbjct: 187 TQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVE--EFRPVDALQLVQQEQ 244
Query: 253 ATWYTAVPTIHQIVLDRHVAKPEPV-YPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAY 311
            T   A PT    +          +    LR +    A++   +L  + +      + AY
Sbjct: 245 VTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNAY 304
Query: 312 AMTEATHLMSSNPLPEDGPHKPGSVGRPVGQEIAIL------DEIGVPQEGGAKGEVCIR 365
             TEA + +            PG        E+ I+      DEI      G +GE+ + 
Sbjct: 305 GTTEAMNSLYMRQPKTGTEMAPGFF-----SEVRIVRIGGGVDEI---VANGEEGELIVA 356
Query: 366 GPNVT-KGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGG-NLHES 422
             +    GY N P+A       GW+ T D+  +  +G + ++GR+ ++I  GG N+H S
Sbjct: 357 ASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPS 415

>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cba-adenylate Length = 504

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 92/423 (21%), Positives = 148/423 (34%), Gaps = 49/423 (11%)
Query: 22  ALSVSGK-FDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRXXX 80
           AL+V  +   LT++ +   VE  A+RL A G+     VA+  PN+ + VI  LA+ R   
Sbjct: 20  ALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGA 79
Query: 81  XXXXXXXXYTPDEFEFYLSDSESKLLLTPAEGNXXXXXXXSKLNISHATATLLDADSELT 140
                     P      L  +E   L+   E          ++    A A          
Sbjct: 80  ---------VPALLNPRLKSAELAELIKRGEMTAAVIAVGRQV----ADAIFQSGSGARI 126
Query: 141 LSLAHSESDTNA------ISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIK 194
           + L     D         I     +P+  A   +TSGTT  PK   + Q    + V  + 
Sbjct: 127 IFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMS 186
Query: 195 SVYKLTESDSTVIV--LPLFHVHGMXXXXXXXXXXXXXXXXXXXGRFSASTFWQDMIKYN 252
           +   L      V++  +PL+HV G                      F      Q + +  
Sbjct: 187 TQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVIE--EFRPVDALQLVQQEQ 244
Query: 253 ATWYTAVPTIHQIVLDRHVAKPEPV-YPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAY 311
            T   A PT    +          +    LR +    A++   +L  + +      +  Y
Sbjct: 245 VTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIY 304
Query: 312 AMTEATH-LMSSNPLPEDGPHKPGSVGRPVGQEIAILDEIGVPQEGGAKGEVCIRGP--- 367
             TEA + L    P       K G+   P         E+ + + GG   E+   G    
Sbjct: 305 GTTEAMNSLYMRQP-------KTGTEMAP-----GFFSEVRIVRIGGGVDEIVANGEEGE 352
Query: 368 -------NVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGG-NL 419
                  +   GY N PEA       GW+ T D+  +  +G + ++GR+ ++I  GG N+
Sbjct: 353 LIVAASDSAFVGYLNQPEATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENI 412
Query: 420 HES 422
           H S
Sbjct: 413 HPS 415

>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 91/419 (21%), Positives = 149/419 (35%), Gaps = 41/419 (9%)
Query: 22  ALSVSGK-FDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRXXX 80
           AL+V  +   LT++ +   VE  A+RL A G+     VA+  PN+ + VI  LA+ R   
Sbjct: 20  ALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGA 79
Query: 81  XXXXXXXXYTPDEFEFYLSDSESKLLLTPAEGNXXXXXXXSKLNISHATATLLDADSELT 140
                     P      L  +E   L+   E          ++    A A          
Sbjct: 80  ---------VPALLNPRLKSAELAELIKRGEMTAAVIAVGRQV----ADAIFQSGSGARI 126
Query: 141 LSLAHSESDTNA------ISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIK 194
           + L     D         I     +P+  A   +TSGTT  PK   + Q    + V  + 
Sbjct: 127 IFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMS 186
Query: 195 SVYKLTESDSTVIV--LPLFHVHGMXXXXXXXXXXXXXXXXXXXGRFSASTFWQDMIKYN 252
           +   L      V++  +PL+HV G                      F      Q + +  
Sbjct: 187 TQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVE--EFRPVDALQLVQQEQ 244
Query: 253 ATWYTAVPTIHQIVLDRHVAKPEPV-YPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAY 311
            T   A PT    +          +    LR +    A++   +L  + +      +  Y
Sbjct: 245 VTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNGY 304
Query: 312 AMTEATHLMSSNPLPEDGPHKPGSVGRPVGQEIAIL------DEIGVPQEGGAKGEVCIR 365
             TEA + +            PG        E+ I+      DEI      G +GE+ + 
Sbjct: 305 GTTEAMNSLYMRQPKTGTEMAPGFF-----SEVRIVRIGGGVDEI---VANGEEGELIVA 356
Query: 366 GPNVT-KGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGG-NLHES 422
             +    GY N P+A       GW+ T D+  +  +G + ++GR+ ++I  GG N+H S
Sbjct: 357 ASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPS 415

>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chlorobenzoate Length = 504

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 91/419 (21%), Positives = 149/419 (35%), Gaps = 41/419 (9%)
Query: 22  ALSVSGK-FDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRXXX 80
           AL+V  +   LT++ +   VE  A+RL A G+     VA+  PN+ + VI  LA+ R   
Sbjct: 20  ALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGA 79
Query: 81  XXXXXXXXYTPDEFEFYLSDSESKLLLTPAEGNXXXXXXXSKLNISHATATLLDADSELT 140
                     P      L  +E   L+   E          ++    A A          
Sbjct: 80  ---------VPALLNPRLKSAELAELIKRGEMTAAVIAVGRQV----ADAIFQSGSGARI 126
Query: 141 LSLAHSESDTNA------ISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIK 194
           + L     D         I     +P+  A   +TSGTT  PK   + Q    + V  + 
Sbjct: 127 IFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMS 186
Query: 195 SVYKLTESDSTVIV--LPLFHVHGMXXXXXXXXXXXXXXXXXXXGRFSASTFWQDMIKYN 252
           +   L      V++  +PL+HV G                      F      Q + +  
Sbjct: 187 TQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVE--EFRPVDALQLVQQEQ 244
Query: 253 ATWYTAVPTIHQIVLDRHVAKPEPV-YPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAY 311
            T   A PT    +          +    LR +    A++   +L  + +      +  Y
Sbjct: 245 VTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIY 304
Query: 312 AMTEATHLMSSNPLPEDGPHKPGSVGRPVGQEIAIL------DEIGVPQEGGAKGEVCIR 365
             TEA + +            PG        E+ I+      DEI      G +GE+ + 
Sbjct: 305 GTTEAMNSLYMRQPKTGTEMAPGFF-----SEVRIVRIGGGVDEI---VANGEEGELIVA 356
Query: 366 GPNVT-KGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGG-NLHES 422
             +    GY N P+A       GW+ T D+  +  +G + ++GR+ ++I  GG N+H S
Sbjct: 357 ASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPS 415

>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND To 4cb Length = 504

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 91/419 (21%), Positives = 149/419 (35%), Gaps = 41/419 (9%)
Query: 22  ALSVSGK-FDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRXXX 80
           AL+V  +   LT++ +   VE  A+RL A G+     VA+  PN+ + VI  LA+ R   
Sbjct: 20  ALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGA 79
Query: 81  XXXXXXXXYTPDEFEFYLSDSESKLLLTPAEGNXXXXXXXSKLNISHATATLLDADSELT 140
                     P      L  +E   L+   E          ++    A A          
Sbjct: 80  ---------VPALLNPRLKSAELAELIKRGEMTAAVIAVGRQV----ADAIFQSGSGARI 126
Query: 141 LSLAHSESDTNA------ISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIK 194
           + L     D         I     +P+  A   +TSGTT  PK   + Q    + V  + 
Sbjct: 127 IFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMS 186
Query: 195 SVYKLTESDSTVIV--LPLFHVHGMXXXXXXXXXXXXXXXXXXXGRFSASTFWQDMIKYN 252
           +   L      V++  +PL+HV G                      F      Q + +  
Sbjct: 187 TQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVE--EFRPVDALQLVQQEQ 244
Query: 253 ATWYTAVPTIHQIVLDRHVAKPEPV-YPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAY 311
            T   A PT    +          +    LR +    A++   +L  + +      +  Y
Sbjct: 245 VTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIY 304
Query: 312 AMTEATHLMSSNPLPEDGPHKPGSVGRPVGQEIAIL------DEIGVPQEGGAKGEVCIR 365
             TEA + +            PG        E+ I+      DEI      G +GE+ + 
Sbjct: 305 GTTEAMNSLYMRQPKTGTEMAPGFF-----SEVRIVRIGGGVDEI---VANGEEGELIVA 356
Query: 366 GPNVT-KGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGG-NLHES 422
             +    GY N P+A       GW+ T D+  +  +G + ++GR+ ++I  GG N+H S
Sbjct: 357 ASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVPDMIISGGENIHPS 415

>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol) Ligase Subunit-1 From Streptococcus Pyogenes Length = 521

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/130 (34%), Positives = 62/130 (47%), Gaps = 12/130 (9%)
Query: 298 RLEEAF-GAPVLEAYAMTEATHLMS----SNPLPEDGPHKPGSVGRPVGQEIAILDEIGV 352
           +L E F  A ++ AY  TEAT  +S    +  + ++    P    +P      I+DE G 
Sbjct: 283 KLFERFPSAKIINAYGPTEATVALSAIEITREMVDNYTRLPIGYPKP-DSPTYIIDEDGK 341
Query: 353 PQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGW-----FHTGDIGYFDSDGYLHLVG 407
               G +GE+ + GP V+KGY NNPE    AF F +     +HTGDIG    D  L   G
Sbjct: 342 ELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAF-FTFKGQPAYHTGDIGSLTEDNILLYGG 400
Query: 408 RIKELINRGG 417
           R+   I   G
Sbjct: 401 RLDFQIKYAG 410

>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 73/172 (42%), Gaps = 14/172 (8%)
Query: 22  ALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRXXXX 81
           AL+ SG+  L+Y  + E   R A RL   G   G VVAL    ++E VI  L V++    
Sbjct: 482 ALTYSGQ-TLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAA 540
Query: 82  XXXXXXXYTPDEFEFYLSDSESKLLLTPAEGNXXXXXXXSKLNISHATATLLDADSELTL 141
                     D   + L+DS +  LLT  E                 T T L  D +   
Sbjct: 541 YLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELPY-------TGTTLFIDDQTRF 593
Query: 142 SLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNI 193
               S+  T AI     DP+D A  ++TSGTT +PKG   T  N+   V ++
Sbjct: 594 EEQASDPAT-AI-----DPNDPAYIMYTSGTTGKPKGNITTHANIQGLVKHV 639

>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 58/123 (47%), Gaps = 13/123 (10%)
Query: 307 VLEAYAMTEATHLMSSN---PLPEDGPHKPGSVGRPVGQ-EIAILDEIGVPQEGGAKGEV 362
           ++  Y  TE T   +++    LP+     P  +G+P+    + IL+E    Q  GA GE+
Sbjct: 749 LINCYGPTEGTVFATAHVVHDLPDSISSLP--IGKPISNASVYILNEQSQLQPFGAVGEL 806
Query: 363 CIRGPNVTKGYKNNPEANKSAFLFGWF-------HTGDIGYFDSDGYLHLVGRIKELINR 415
           CI G  V+KGY N  +  K  F+   F        TGD+  +  DG +   GRI + +  
Sbjct: 807 CISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKI 866
Query: 416 GGN 418
            G+
Sbjct: 867 RGH 869

>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase Medium-Chain Family Member 2a, With L64p Mutation Length = 570

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 83/400 (20%), Positives = 147/400 (36%), Gaps = 27/400 (6%)
Query: 33  YSRIHELVERAASRLV-AAGINAGDVVALTFPNTVEFVIMFLAVIRXXXXXXXXXXXYTP 91
           +  + E  ++AA+ L  A G+  GD VA+  P   E+ ++ L  IR              
Sbjct: 76  FRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKS 135
Query: 92  DEFEFYLSDSESKLLLTPAEGNXXXXXXXS-------KLNISHATATLLDADSELTLSLA 144
            +  + L  S++K ++   E         S       KL +S  +      D  L     
Sbjct: 136 TDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSC-----DGWLNFKKL 190
Query: 145 HSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDS 204
            +E+ T      T      A++  TSGT+  PK    + ++L            L  SD 
Sbjct: 191 LNEASTTHHCVETGSQEASAIYF-TSGTSGLPKMAEHSYSSLGLKAKMDAGWTGLQASDI 249
Query: 205 TVIVLPLFHVHGMXXXXXXXXXXXXXXXXXXXGRFSASTFWQDMIKYNATWYTAVPTIHQ 264
              +     +  +                    +F      + +  Y        P +++
Sbjct: 250 MWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYR 309
Query: 265 IVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTE-ATHLMSSN 323
           ++L + ++  +  +P L+   +   SL P  L       G  + E+Y  TE     M S 
Sbjct: 310 MLLQQDLSSYK--FPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSK 367
Query: 324 PLPEDGPHKPGSVGRPVG-QEIAILDEIGVPQEGGAKGEVCIRGP-----NVTKGYKNNP 377
            +      KPG +G      ++ I+D+ G     G +G++ IR        +  GY +NP
Sbjct: 368 TMK----IKPGYMGTAASCYDVQIIDDKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNP 423
Query: 378 EANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
           +   +     ++  GD G  D DGY   +GR  ++IN  G
Sbjct: 424 DKTAANIRGDFWLLGDRGIKDEDGYFQFMGRADDIINSSG 463

>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase Medium-chain Family Member 2a (l64p Mutation) In Complex With Ibuprofen Length = 569

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 83/400 (20%), Positives = 147/400 (36%), Gaps = 27/400 (6%)
Query: 33  YSRIHELVERAASRLV-AAGINAGDVVALTFPNTVEFVIMFLAVIRXXXXXXXXXXXYTP 91
           +  + E  ++AA+ L  A G+  GD VA+  P   E+ ++ L  IR              
Sbjct: 76  FRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKS 135
Query: 92  DEFEFYLSDSESKLLLTPAEGNXXXXXXXS-------KLNISHATATLLDADSELTLSLA 144
            +  + L  S++K ++   E         S       KL +S  +      D  L     
Sbjct: 136 TDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSC-----DGWLNFKKL 190
Query: 145 HSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDS 204
            +E+ T      T      A++  TSGT+  PK    + ++L            L  SD 
Sbjct: 191 LNEASTTHHCVETGSQEASAIYF-TSGTSGLPKMAEHSYSSLGLKAKMDAGWTGLQASDI 249
Query: 205 TVIVLPLFHVHGMXXXXXXXXXXXXXXXXXXXGRFSASTFWQDMIKYNATWYTAVPTIHQ 264
              +     +  +                    +F      + +  Y        P +++
Sbjct: 250 MWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYR 309
Query: 265 IVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTE-ATHLMSSN 323
           ++L + ++  +  +P L+   +   SL P  L       G  + E+Y  TE     M S 
Sbjct: 310 MLLQQDLSSYK--FPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSK 367
Query: 324 PLPEDGPHKPGSVGRPVG-QEIAILDEIGVPQEGGAKGEVCIRGP-----NVTKGYKNNP 377
            +      KPG +G      ++ I+D+ G     G +G++ IR        +  GY +NP
Sbjct: 368 TMK----IKPGYMGTAASCYDVQIIDDKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNP 423
Query: 378 EANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
           +   +     ++  GD G  D DGY   +GR  ++IN  G
Sbjct: 424 DKTAANIRGDFWLLGDRGIKDEDGYFQFMGRADDIINSSG 463

>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1 With Atp From Streptomyces Length = 544

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 88/213 (41%), Gaps = 31/213 (14%)
Query: 6   LIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNT 65
           L+ L  +V      + ALS      ++Y R+    +  A  L+A G+  GD VAL     
Sbjct: 37  LVSLFREVAATAPERTALSAEDD-RISYGRLDAWSDAVARTLLAEGVRPGDRVALRMSPG 95
Query: 66  VEFVIMFLAVIRXXXXXXXXXXXYTPDEFEFYLSDS-ESKLLLTPAEGNXXXXXXXSKLN 124
            E ++  LA+++                 +F L+DS  S L+  P EG        +++ 
Sbjct: 96  AEAIVAILAILKCGAAYVPVDLRNPVSRSDFILADSGASALIGEPHEG-----CAVTRVV 150
Query: 125 ISHATATLLDADSELTLSLAHSESDTNAISKLTNDPS----DVALFLHTSGTTSRPKGVP 180
            + A A   DA+                   +T  P     D+A  ++TSGTT  PKGVP
Sbjct: 151 RTAAVAECKDAEP----------------GPVTGAPGPGAEDMAYVIYTSGTTGNPKGVP 194
Query: 181 LTQNNLAASVSNIKSVYKLTESDSTVIVLPLFH 213
           +   N+ A ++   SV+  +  D  +    LFH
Sbjct: 195 VRHANVLALLAGAPSVFDFSGDDRWL----LFH 223

>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With D-Alanine Adenylate Length = 512

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 83/376 (22%), Positives = 143/376 (38%), Gaps = 57/376 (15%)
Query: 67  EFVIMFLAVIRXXXXXXXXXXXYTPDEFEFYLSDSESKLLLTPAEGNXXXXXXXSKLNIS 126
           E +I FL  ++              D  +    +S +KLLL+            + + ++
Sbjct: 63  EMIINFLGCVKAGHAYIPVDLSIPADRVQRIAENSGAKLLLS-----------ATAVTVT 111
Query: 127 HATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNL 186
                ++  D+   +   H  +  N    +  D +     ++TSG+T  PKGV +T N L
Sbjct: 112 DLPVRIVSEDNLKDIFFTHKGNTPNPEHAVKGDEN--FYIIYTSGSTGNPKGVQITYNCL 169
Query: 187 AASVSNIKSVYKLTESDSTVIVLPL-FHVHGMXXXXXXXXXXXXXXXXXXXGRFSASTFW 245
            +        + L      +   P  F +  M                      +  T W
Sbjct: 170 VSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSL---------------VTGGTLW 214
Query: 246 ---QDMI-----------KYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASL 291
              +DMI           + +   +T+ P+  ++ L    +  E + P ++    C   L
Sbjct: 215 AIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCL-MEASFSESMLPNMKTFLFCGEVL 273
Query: 292 APVILSRLEEAF-GAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPVGQ-----EIA 345
              +  +L E F  A ++  Y  TEAT  ++   + E+   +  S+  PVG       + 
Sbjct: 274 PNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSL--PVGYCKSDCRLL 331
Query: 346 ILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF----GWFHTGDIGYFDSDG 401
           I+ E G     G KGE+ I GP+V+ GY  +PE  + AF        + TGD GY + +G
Sbjct: 332 IMKEDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYVE-NG 390
Query: 402 YLHLVGRIKELINRGG 417
            L   GR+   I   G
Sbjct: 391 LLFYNGRLDFQIKLHG 406

>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And Magnesium Length = 512

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 81/368 (22%), Positives = 141/368 (38%), Gaps = 57/368 (15%)
Query: 67  EFVIMFLAVIRXXXXXXXXXXXYTPDEFEFYLSDSESKLLLTPAEGNXXXXXXXSKLNIS 126
           E +I FL  ++              D  +    +S +KLLL+            + + ++
Sbjct: 63  EMIINFLGCVKAGHAYIPVDLSIPADRVQRIAENSGAKLLLS-----------ATAVTVT 111
Query: 127 HATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNL 186
                ++  D+   +   H  +  N    +  D +     ++TSG+T  PKGV +T N L
Sbjct: 112 DLPVRIVSEDNLKDIFFTHKGNTPNPEHAVKGDEN--FYIIYTSGSTGNPKGVQITYNCL 169
Query: 187 AASVSNIKSVYKLTESDSTVIVLPL-FHVHGMXXXXXXXXXXXXXXXXXXXGRFSASTFW 245
            +        + L      +   P  F +  M                      +  T W
Sbjct: 170 VSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSL---------------VTGGTLW 214
Query: 246 ---QDMI-----------KYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASL 291
              +DMI           + +   +T+ P+  ++ L    +  E + P ++    C   L
Sbjct: 215 AIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCL-MEASFSESMLPNMKTFLFCGEVL 273
Query: 292 APVILSRLEEAF-GAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPVGQ-----EIA 345
              +  +L E F  A ++  Y  TEAT  ++   + E+   +  S+  PVG       + 
Sbjct: 274 PNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSL--PVGYCKSDCRLL 331
Query: 346 ILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF----GWFHTGDIGYFDSDG 401
           I+ E G     G KGE+ I GP+V+ GY  +PE  + AF        + TGD GY + +G
Sbjct: 332 IMKEDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYVE-NG 390
Query: 402 YLHLVGRI 409
            L   GR+
Sbjct: 391 LLFYNGRL 398

>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SELENOMETHIONINE Length = 504

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 91/423 (21%), Positives = 144/423 (34%), Gaps = 49/423 (11%)
Query: 22  ALSVSGK-FDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRXXX 80
           AL+V  +   LT++ +   VE  A+RL A G+     VA+  PN+ + VI  LA+ R   
Sbjct: 20  ALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGA 79
Query: 81  XXXXXXXXYTPDEFEFYLSDSESKLLLTPAEGNXXXXXXXSKLNISHATATLLDADSELT 140
                     P      L  +E   L+   E          ++    A A          
Sbjct: 80  ---------VPALLNPRLKSAELAELIKRGEXTAAVIAVGRQV----ADAIFQSGSGARI 126
Query: 141 LSLAHSESDTNA------ISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIK 194
           + L     D         I     +P+  A   +TSGTT  PK   + Q    + V    
Sbjct: 127 IFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFXS 186
Query: 195 SVYKLTESDSTVIV--LPLFHVHGMXXXXXXXXXXXXXXXXXXXGRFSASTFWQDMIKYN 252
           +   L      V++   PL+HV G                      F      Q + +  
Sbjct: 187 TQVGLRHGRHNVVLGLXPLYHVVGFFAVLVAALALDGTYVVVE--EFRPVDALQLVQQEQ 244
Query: 253 ATWYTAVPTIHQIVLDRHVAKPEPV-YPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAY 311
            T   A PT    +          +    LR +    A+    +L  + +      +  Y
Sbjct: 245 VTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATXPDAVLETVHQHLPGEKVNIY 304
Query: 312 AMTEATH-LMSSNPLPEDGPHKPGSVGRPVGQEIAILDEIGVPQEGGAKGEVCIRGP--- 367
             TEA + L    P       K G+   P         E+ + + GG   E+   G    
Sbjct: 305 GTTEAXNSLYXRQP-------KTGTEXAP-----GFFSEVRIVRIGGGVDEIVANGEEGE 352
Query: 368 -------NVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGG-NL 419
                  +   GY N P+A       GW+ T D+  +  +G + ++GR+ + I  GG N+
Sbjct: 353 LIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDXIISGGENI 412
Query: 420 HES 422
           H S
Sbjct: 413 HPS 415

>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub Length = 469

Iteration: 1
 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 63/153 (41%), Gaps = 23/153 (15%)
Query: 30  DLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRXXXXXXXXXXXY 89
           +LTY  ++E   R A RLV  G+  G +V +      + V+  LAV++           +
Sbjct: 100 ELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGYTMLDPQF 159
Query: 90  TPDEFEFYLSDSESKLLLT--PAEGNXXXXXXXSKLNISHATATLLDADSELTLSLAHSE 147
             +     L D+ + LL+T  P  G                T TL   D         + 
Sbjct: 160 PVERLALSLEDTGAPLLVTSRPLSGRLT------------GTTTLYVEDE--------AA 199
Query: 148 SDTNAISKLTN-DPSDVALFLHTSGTTSRPKGV 179
           SD  A +  T   P DVA  + TSG+T RPKGV
Sbjct: 200 SDAPAGNLATGVGPEDVACVMFTSGSTGRPKGV 232

>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp Length = 570

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 63/153 (41%), Gaps = 23/153 (15%)
Query: 30  DLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRXXXXXXXXXXXY 89
           +LTY  ++E   R A RLV  G+  G +V +      + V+  LAV++           +
Sbjct: 100 ELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGYTMLDPQF 159
Query: 90  TPDEFEFYLSDSESKLLLT--PAEGNXXXXXXXSKLNISHATATLLDADSELTLSLAHSE 147
             +     L D+ + LL+T  P  G                T TL   D         + 
Sbjct: 160 PVERLALSLEDTGAPLLVTSRPLSGRLT------------GTTTLYVEDE--------AA 199
Query: 148 SDTNAISKLTN-DPSDVALFLHTSGTTSRPKGV 179
           SD  A +  T   P DVA  + TSG+T RPKGV
Sbjct: 200 SDAPAGNLATGVGPEDVACVMFTSGSTGRPKGV 232

>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From Legionella Pneumophila Length = 590

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 53/102 (51%), Gaps = 12/102 (11%)
Query: 329 GPHKPGSVGRPVGQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFG 387
           G +K  S G P+ QE+ I+D +  +P +    GE+ ++  +V KGY N PE  + AF   
Sbjct: 369 GSYKLVSSGNPI-QEVKIIDPDTLIPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGK 427
Query: 388 ---------WFHTGDIGYFDSDGYLHLVGRIKELINRGGNLH 420
                    +  TGD+G+   +  L++ GRIK+LI   G  H
Sbjct: 428 IKDDERSAIYLRTGDLGFL-HENELYVTGRIKDLIIIYGKNH 468

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	431
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	1e-129
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	1e-122
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	1e-115
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	1e-114
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	1e-112
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	1e-111
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	1e-109
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	1e-109
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	1e-108
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	1e-107
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	1e-107
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	1e-106
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	1e-103
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	1e-102
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	1e-96
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	9e-70
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	1e-65
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	7e-65
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	3e-60
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	1e-58
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	1e-55
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	2e-32
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	4e-31
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	4e-30
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	2e-29
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	2e-28
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	5e-28
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	3e-26
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	9e-19
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	2e-16
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	4e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-08
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	3e-04
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	6e-04
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	6e-04

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505

 Score =  381 bits (981), Expect = e-129
 Identities = 127/421 (30%), Positives = 185/421 (43%), Gaps = 39/421 (9%)

Query: 5   TLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPN 64
               L        + + AL    +  LTY+   EL   A     A  I     VA+    
Sbjct: 24  LFPALSPAPTGAPADRPALRFGER-SLTYA---ELAAAAG--ATAGRIGGAGRVAVWATP 77

Query: 65  TVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLN 124
            +E  +  +A + A   A PLN      E    LSDS   L+L P +        A    
Sbjct: 78  AMETGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAELPPALGA---- 133

Query: 125 ISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQN 184
                   +D D     ++    +D            D AL ++TSGTT  PKG  + + 
Sbjct: 134 -----LERVDVDVRARGAVPEDGAD----------DGDPALVVYTSGTTGPPKGAVIPRR 178

Query: 185 NLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTF 244
            LA ++  +   ++ T  D  V  LPLFHVHG++ G+L     G +V     GRFS    
Sbjct: 179 ALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRH--LGRFSTEGA 236

Query: 245 WQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVY--PKLRFIRSCSASLAPVILSRLEEA 302
               +   AT    VPT++  + +   A PE        R + S SA+L      R+  A
Sbjct: 237 A-RELNDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAA 295

Query: 303 FGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIG---VPQEGGA 358
            G  V+E Y MTE T + +S     DG  + G+VG P+ G E+ +++E G      +G +
Sbjct: 296 TGRRVIERYGMTE-TLMNTSVRA--DGEPRAGTVGVPLPGVELRLVEEDGTPIAALDGES 352

Query: 359 KGEVCIRGPNVTKGYKNNPEANKSAFL-FGWFHTGDIGYFDSDGYLHLVGR-IKELINRG 416
            GE+ +RGPN+   Y N P+A  +AF   G+F TGD+   D DGY+ +VGR   +LI  G
Sbjct: 353 VGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSG 412

Query: 417 G 417
           G
Sbjct: 413 G 413

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503

 Score =  362 bits (931), Expect = e-122
 Identities = 123/401 (30%), Positives = 188/401 (46%), Gaps = 15/401 (3%)

Query: 20  KRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRAR 79
           K A+  +    ++Y+ +     R A+ LVA G+  GD VA     +VE ++++LA +RA 
Sbjct: 18  KLAIETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAG 77

Query: 80  ATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSEL 139
               PLN AYT  E +++++D+E K+++          A A+K+  +  T       S  
Sbjct: 78  GVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPDGRGSLT 137

Query: 140 TLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKL 199
             +   SE+             D+A  L+TSGTT R KG  L+ +NLA++   +   ++ 
Sbjct: 138 DAAAGASEAFATI----DRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRF 193

Query: 200 TESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAV 259
           T  D  +  LP++H HG+      +  A  ++      +F        M +  AT    V
Sbjct: 194 TPDDVLIHALPIYHTHGLFVASNVTLFARGSMIF--LPKFDPDKILDLMAR--ATVLMGV 249

Query: 260 PTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHL 319
           PT +  +L       +     +R   S SA L            G  VLE Y MTE   +
Sbjct: 250 PTFYTRLLQ-SPRLTKETTGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETN-M 307

Query: 320 MSSNPLPEDGPHKPGSVGRPV-GQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNP 377
            +SNP   DG   PG+VG  + G    + D E G     G  G + ++GPNV KGY   P
Sbjct: 308 NTSNPY--DGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGMIEVKGPNVFKGYWRMP 365

Query: 378 EANKSAFLF-GWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
           E  KS F   G+F TGD+G  D  GY+H++GR K+L+  GG
Sbjct: 366 EKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVITGG 406

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517

 Score =  345 bits (888), Expect = e-115
 Identities = 115/388 (29%), Positives = 181/388 (46%), Gaps = 12/388 (3%)

Query: 31  LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
           +TY++++ L  R A  L A GI  GD VAL  PN+VEF  +F    +  A A P+N    
Sbjct: 44  MTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLA 103

Query: 91  PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDT 150
             E  F LSDS SK+++  A       A  ++ +        + ADS      + +  + 
Sbjct: 104 APEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIGADSLAERLRSAAADEP 163

Query: 151 NAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLP 210
                      D    ++TSGTT  PKGV  T  ++ ++ S+  S   +   D  ++ LP
Sbjct: 164 AV----ECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLP 219

Query: 211 LFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRH 270
           +FHV  +   + S+      +++P   +F A+  W  +++       AVP I   +    
Sbjct: 220 MFHVAALTTVIFSAMRGVTLISMP---QFDATKVWSLIVEERVCIGGAVPAILNFMRQ-V 275

Query: 271 VAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGP 330
               E   P  R+  +  A +   ++          V++ YA+TE+    +     ED  
Sbjct: 276 PEFAELDAPDFRYFITGGAPMPEALIKIYAA-KNIEVVQGYALTESCGGGTLLL-SEDAL 333

Query: 331 HKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWF 389
            K GS GR     ++A+  + GV +E G  GEV I+   + K Y N PEA + AF  GWF
Sbjct: 334 RKAGSAGRATMFTDVAVRGDDGVIREHGE-GEVVIKSDILLKEYWNRPEATRDAFDNGWF 392

Query: 390 HTGDIGYFDSDGYLHLVGRIKELINRGG 417
            TGDIG  D +GYL++  R+K++I  GG
Sbjct: 393 RTGDIGEIDDEGYLYIKDRLKDMIISGG 420

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509

 Score =  342 bits (879), Expect = e-114
 Identities = 119/423 (28%), Positives = 182/423 (43%), Gaps = 24/423 (5%)

Query: 1   MEGVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVAL 60
           +   TL  +  +    F  + A  V G   LT+       ER AS L+  G++ GD VA+
Sbjct: 3   LHDFTLADVYRRNAALFPDRTAFMVDGV-RLTHRDYLARAERLASGLLRDGVHTGDRVAI 61

Query: 61  TFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAA 120
              N  E + +  AV    A   P+N     DE  F L D    +++   +         
Sbjct: 62  LSQNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVL 121

Query: 121 SKLNISHATATLLDADSELT--LSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKG 178
             L        + D          LA     +          +D  + +HT+    RP+G
Sbjct: 122 PSLGGVKKAYAIGDGSGPFAPFKDLASDTPFSAP----EFGAADGFVIIHTAAVGGRPRG 177

Query: 179 VPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGR 238
             ++Q NL  + S++   ++LTE+D  + +LPLFHV G+   L    A GA+V      +
Sbjct: 178 ALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAA---K 234

Query: 239 FSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSR 298
           F  +   +D+  +  T       +   +LD      +    +L  +R+ +    P  + R
Sbjct: 235 FDPAQAARDIEAHKVTVMAEFAPMLGNILD------QAAPAQLASLRAVTGLDTPETIER 288

Query: 299 LEEA-FGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEG 356
            E     A     +  +E + L +  P   D   +P S GRP+  + +A++D    P   
Sbjct: 289 FEATCPNATFWATFGQSETSGLSTFAP-YRD---RPKSAGRPLFWRTVAVVDAEDRPLPP 344

Query: 357 GAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRI--KELIN 414
           G  GE+ +RGP V KGY NN  A + AF  GW HTGD+G FD+DGYL   GR   KELI 
Sbjct: 345 GEVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFDADGYLFYAGRAPEKELIK 404

Query: 415 RGG 417
            GG
Sbjct: 405 TGG 407

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501

 Score =  339 bits (871), Expect = e-112
 Identities = 90/423 (21%), Positives = 157/423 (37%), Gaps = 29/423 (6%)

Query: 5   TLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPN 64
           +L   L +   Q     A++   +   TY  ++      A RL          V L   N
Sbjct: 2   SLDFWLYKQAQQNGHHIAITDGQE-SYTYQNLYCEASLLAKRL---KAYQQSRVGLYIDN 57

Query: 65  TVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLN 124
           +++ +I+  A   A    A +N   TP+E    +   + +L+              S  +
Sbjct: 58  SIQSIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDD 117

Query: 125 ISHATATLL---------DADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSR 175
           I  A   +              + +      +   + I   + +  D+A  + TSGTT  
Sbjct: 118 IEFAGRDITTNGLLDNTMGIQYDTSNETVVPKESPSNILNTSFNLDDIASIMFTSGTTGP 177

Query: 176 PKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPA 235
            K VP T  N  AS    K         + + VLP++H+ G+   L +         +  
Sbjct: 178 QKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVD- 236

Query: 236 AGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVI 295
             +F+A      +     T  + VP     ++ +           L+ I    A L+  +
Sbjct: 237 --KFNAEQILTMIKNERITHISLVPQTLNWLMQQ----GLHEPYNLQKILLGGAKLSATM 290

Query: 296 LSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQ 354
           +    + +  P+  ++ MTE      +   PE    +P +VG P    ++ I +      
Sbjct: 291 IETALQ-YNLPIYNSFGMTETCSQFLTAT-PEMLHARPDTVGMPSANVDVKIKNP----- 343

Query: 355 EGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELIN 414
                GE+ I+G NV  GY    +     F  G+F+TGDI   D +GY+ +  R K+LI 
Sbjct: 344 NKEGHGELMIKGANVMNGYLYPTDLTG-TFENGYFNTGDIAEIDHEGYVMIYDRRKDLII 402

Query: 415 RGG 417
            GG
Sbjct: 403 SGG 405

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549

 Score =  336 bits (863), Expect = e-111
 Identities = 109/441 (24%), Positives = 192/441 (43%), Gaps = 40/441 (9%)

Query: 4   VTLIGLLNQVIDQFSSKRAL--------SVSGKFDLTYSRIHELVERAASRLVAAGINAG 55
           ++L   ++   ++F  K A+        S   +  + +  I E+ ++ AS +   G+  G
Sbjct: 19  ISLADRIDAAAEKFGEKTAIISAEPKFPSEFPE-SMNFLEICEVTKKLASGISRKGVRKG 77

Query: 56  DVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAA 115
           + V +  PN++++V+   A+ R  AT  P+N  Y   E E  L+DSE+  L+  +     
Sbjct: 78  EHVGVCIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYEN 137

Query: 116 AQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSR 175
            +    K  +       +      +LS        +  +   N   DVAL  +T GTT  
Sbjct: 138 FKPVLEKTGVER---VFVVGGEVNSLSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGM 194

Query: 176 PKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPA 235
           PKGV LT  NLAA+   +     L+  D+ V  +P+FH        L        V +  
Sbjct: 195 PKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEFGLVNLMVTVGNEYVVMG- 253

Query: 236 AGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPK-----LRFIRSCSAS 290
              F+     +++ KY  T+  AVP    ++++      E          L+   + +  
Sbjct: 254 --MFNQEMLAENIEKYKGTFSWAVPPALNVLVN----TLESSNKTYDWSYLKVFATGAWP 307

Query: 291 LAPVILSRLEEAFG-------APVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQ 342
           +AP ++ +L +              + + MTEA  ++++NP       K  + G P+   
Sbjct: 308 VAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPP--LRLDKSTTQGVPMSDI 365

Query: 343 EIAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF-----GWFHTGDIGY 396
           E+ ++  E G     G  GE+ IRGPN+ KGY    + N+  + +      +F TGD+G+
Sbjct: 366 ELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGF 425

Query: 397 FDSDGYLHLVGRIKELINRGG 417
            D +G+LH   R+KE+I   G
Sbjct: 426 IDEEGFLHFQDRVKEVIKYKG 446

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617

 Score =  332 bits (854), Expect = e-109
 Identities = 96/396 (24%), Positives = 164/396 (41%), Gaps = 14/396 (3%)

Query: 31  LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
           L+Y  +++  +  A  L   GI  G+   +   N  E  I F A+++          ++ 
Sbjct: 51  LSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVLALFSHQ 110

Query: 91  PDEFEFYLSDSESKLLLTPAE-GNAAAQAAASKLNISHAT---ATLLDADSELTLSLAHS 146
             E   Y S  E  LL+   +    +     +     H++     LL+   E  L  A +
Sbjct: 111 RSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGEHNLQDAIN 170

Query: 147 ESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTV 206
               +  +   +   +VA F  + GTT  PK +P T N+   SV     + + T+    +
Sbjct: 171 HPAEDFTA-TPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYL 229

Query: 207 IVLPLFHVHGM-LAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQI 265
             +P  H + M   G L  F AG  V L A    SA+  +  + K+       VP    +
Sbjct: 230 CAIPAAHNYAMSSPGSLGVFLAGGTVVLAA--DPSATLCFPLIEKHQVNVTALVPPAVSL 287

Query: 266 VLDRHVAKPEPV-YPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNP 324
            L   +          L+ ++   A L+  + +R+    G  + + + M E   L++   
Sbjct: 288 WLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEG--LVNYTR 345

Query: 325 LPEDGPHKPGSVGRPV--GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKS 382
           L +       + G P+    E+ + D  G P   G  G +  RGP   +GY  +P+ N S
Sbjct: 346 LDDSAEKIIHTQGYPMCPDDEVWVADAEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNAS 405

Query: 383 AFLF-GWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
           AF   G++ +GD+   D +GY+ + GR K+ INRGG
Sbjct: 406 AFDANGFYCSGDLISIDPEGYITVQGREKDQINRGG 441

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544

 Score =  330 bits (849), Expect = e-109
 Identities = 94/425 (22%), Positives = 164/425 (38%), Gaps = 15/425 (3%)

Query: 2   EGVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALT 61
               L  +L   +       A+ + G+  L+Y  +  L    A+RL   G+  GD   + 
Sbjct: 28  IDQPLTRILTVGVQSHPHSLAI-ICGERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQ 86

Query: 62  FPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAE-----GNAAA 116
            PN  EF I+F A+++A         ++   E   ++   + KLL+   +      N   
Sbjct: 87  LPNVAEFYIVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFI 146

Query: 117 QAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRP 176
            +             L    ++  L           +   +    +VA F  + G+T  P
Sbjct: 147 DSLHDVNLSPEIILMLNHQATDFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTP 206

Query: 177 KGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGM-LAGLLSSFAAGAAVTLPA 235
           K +P T N+   SV     +  L  +   +  LP  H   +   G L    AG  V +  
Sbjct: 207 KLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVM-- 264

Query: 236 AGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVI 295
           A        +  + ++     + VP+   + L+   A+ +     L+ ++   AS    +
Sbjct: 265 APNPEPLNCFSIIQRHQVNMASLVPSAVIMWLE-KAAQYKDQIQSLKLLQVGGASFPESL 323

Query: 296 LSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV--GQEIAILDEIGVP 353
             ++ E     + + + M E     +     ++      + GRP+    EI I+DE    
Sbjct: 324 ARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSDE--QIFTTQGRPISSDDEIKIVDEQYRE 381

Query: 354 QEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF-GWFHTGDIGYFDSDGYLHLVGRIKEL 412
              G  G +  RGP    GY  +PE N   F    ++++GD+     DG L +VGRIK+ 
Sbjct: 382 VPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQ 441

Query: 413 INRGG 417
           INRGG
Sbjct: 442 INRGG 446

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536

 Score =  329 bits (847), Expect = e-108
 Identities = 127/436 (29%), Positives = 191/436 (43%), Gaps = 34/436 (7%)

Query: 2   EGVTLIGLLNQVIDQFSSKRAL--SVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVA 59
           + + L   + + +   SSK  L    +G    TY+ +     R AS L   GI  GDV+ 
Sbjct: 20  KNLPLHSYVLENLSNHSSKPCLINGANGD-VYTYADVELTARRVASGLNKIGIQQGDVIM 78

Query: 60  LTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAA 119
           L  P++ EFV+ FL      A     N   TP E   +   S +KLL+T A      +  
Sbjct: 79  LFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDF 138

Query: 120 ASKLNISHATATLLDADSELTLSLAH-SESDTNAISKLTNDPSDVALFLHTSGTTSRPKG 178
           A + ++       +D+  +  L  +  +++D N   ++   P DV    ++SGTT  PKG
Sbjct: 139 ARESDVKVM---CVDSAPDGCLHFSELTQADENEAPQVDISPDDVVALPYSSGTTGLPKG 195

Query: 179 VPLTQNNLAASVSNIKSV----YKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAA-VTL 233
           V LT   L  SV+               D  + VLP+FH++ + + +L     GA  + +
Sbjct: 196 VMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIM 255

Query: 234 PAAGRFSASTFWQDMIKYNATWYTAVPTI------HQIVLDRHVAKPEPVYPKLRFIRSC 287
           P   +F   +    + KY  +    VP +         +    ++        LR I+S 
Sbjct: 256 P---KFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLS-------SLRMIKSG 305

Query: 288 SASLAPVILSRLEEAF-GAPVLEAYAMTEATHLMSSNPL--PEDGPHKPGSVGRPV-GQE 343
            A L   +   +   F  A + + Y MTEA  +++       E    KPG+ G  V   E
Sbjct: 306 GAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAE 365

Query: 344 IAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF-GWFHTGDIGYFDSDG 401
           + I+D E G        GE+CIRG  + KGY N+PEA        GW HTGDIGY D D 
Sbjct: 366 MKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDD 425

Query: 402 YLHLVGRIKELINRGG 417
            L +V R+KELI   G
Sbjct: 426 ELFIVDRLKELIKYKG 441

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529

 Score =  326 bits (839), Expect = e-107
 Identities = 98/411 (23%), Positives = 162/411 (39%), Gaps = 18/411 (4%)

Query: 16  QFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAV 75
             + K A         TY  + E   R AS L   G++  + + L   +TV   + FL  
Sbjct: 35  TRAGKTAYIDDTG-STTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGA 93

Query: 76  IRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLN-------ISHA 128
           + A       N   TP ++ + L+ S ++ ++           A            +S  
Sbjct: 94  LYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQP 153

Query: 129 TATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAA 188
             +           +  +     A         D+A +L++SG+T +PKG   T  NL  
Sbjct: 154 RESEPRLAPLFEELIDAAAPAAKAA---ATGCDDIAFWLYSSGSTGKPKGTVHTHANLYW 210

Query: 189 SV-SNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQD 247
           +     K +  + E+D       LF  +G+  GL    + GA   L  A R +A   +  
Sbjct: 211 TAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAIL-MAERPTADAIFAR 269

Query: 248 MIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPV 307
           ++++  T +  VPT++   +      P      +R   S   +L   I  R    FG  +
Sbjct: 270 LVEHRPTVFYGVPTLY-ANMLVSPNLPARADVAIRICTSAGEALPREIGERFTAHFGCEI 328

Query: 308 LEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRG 366
           L+    TE  H+  SN     G  + G+ GRPV G EI + DE G     G  G++ I+G
Sbjct: 329 LDGIGSTEMLHIFLSNR---AGAVEYGTTGRPVPGYEIELRDEAGHAVPDGEVGDLYIKG 385

Query: 367 PNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
           P+    Y NN E +++ FL  W  +GD      +G     GR  +++   G
Sbjct: 386 PSAAVMYWNNREKSRATFLGEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSG 436

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539

 Score =  325 bits (835), Expect = e-107
 Identities = 93/423 (21%), Positives = 169/423 (39%), Gaps = 15/423 (3%)

Query: 2   EGVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALT 61
            G T   LL     ++  + A+   G    +Y  +    +R A+     GI   D V + 
Sbjct: 23  AGETFGDLLRDRAAKYGDRIAI-TCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQ 81

Query: 62  FPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAE---GNAAAQA 118
            PN  EF  +  A+ R  A       ++   E  ++   +E+   + P      +  + A
Sbjct: 82  LPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLA 141

Query: 119 AASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKG 178
              +  +      ++  ++E  L L    ++   + ++    SDVA    + G+T   K 
Sbjct: 142 RQVQSKLPTLKNIIVAGEAEEFLPLEDLHTEPVKLPEV--KSSDVAFLQLSGGSTGLSKL 199

Query: 179 VPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGM-LAGLLSSFAAGAAVTLPAAG 237
           +P T ++   S+     V  L  S   +  LP+ H + +   G+L    AG  V L  + 
Sbjct: 200 IPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVL--SP 257

Query: 238 RFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILS 297
             S    +  + +   T    VP +  + +D   +        L+ ++   A  +     
Sbjct: 258 SPSPDDAFPLIEREKVTITALVPPLAMVWMD-AASSRRDDLSSLQVLQVGGAKFSAEAAR 316

Query: 298 RLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV--GQEIAILDEIGVPQE 355
           R++  FG  + + + M E     +    PE+      + G+P+    E  + D+     +
Sbjct: 317 RVKAVFGCTLQQVFGMAEGLVNYTRLDDPEE--IIVNTQGKPMSPYDESRVWDDHDRDVK 374

Query: 356 GGAKGEVCIRGPNVTKGYKNNPEANKSAFLF-GWFHTGDIGYFDSDGYLHLVGRIKELIN 414
            G  G +  RGP   +GY    E N ++F   G++ TGDI     DGY+ + GR K+ IN
Sbjct: 375 PGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQIN 434

Query: 415 RGG 417
           RGG
Sbjct: 435 RGG 437

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504

 Score =  323 bits (830), Expect = e-106
 Identities = 96/422 (22%), Positives = 159/422 (37%), Gaps = 24/422 (5%)

Query: 5   TLIGLLNQVIDQFSSKRALSVSGK-FDLTYSRIHELVERAASRLVAAGINAGDVVALTFP 63
           T+  +L +   +     AL+V  +   LT++ +   VE  A+RL A G+     VA+  P
Sbjct: 3   TVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAP 62

Query: 64  NTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKL 123
           N+ + VI  LA+ R  A  A LN      E    +   E    +       A     S  
Sbjct: 63  NSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGS 122

Query: 124 NISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQ 183
                    L  D E         S    I     +P+  A   +TSGTT  PK   + Q
Sbjct: 123 GARIIFLGDLVRDGEPY-------SYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQ 175

Query: 184 NNLAASVSNIKSVYKL--TESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSA 241
               + V  + +   L     +  + ++PL+HV G  A L+++ A      +     F  
Sbjct: 176 RAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVE--EFRP 233

Query: 242 STFWQDMIKYNATWYTAVPTIHQIVLDR-HVAKPEPVYPKLRFIRSCSASLAPVILSRLE 300
               Q + +   T   A PT    +      A        LR +    A++   +L  + 
Sbjct: 234 VDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVH 293

Query: 301 EAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEG--- 356
           +      +  Y  TEA + +           K G+   P    E+ I+   G   E    
Sbjct: 294 QHLPGEKVNIYGTTEAMNSLYMR------QPKTGTEMAPGFFSEVRIVRIGGGVDEIVAN 347

Query: 357 GAKGEVCIRGPN-VTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINR 415
           G +GE+ +   +    GY N P+A       GW+ T D+  +  +G + ++GR+ ++I  
Sbjct: 348 GEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIIS 407

Query: 416 GG 417
           GG
Sbjct: 408 GG 409

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550

 Score =  316 bits (812), Expect = e-103
 Identities = 100/440 (22%), Positives = 171/440 (38%), Gaps = 39/440 (8%)

Query: 4   VTLIGLLNQVIDQFS---SKRAL--SVSGKFDLTYSRIHELVERAASRLVAAGINAGDVV 58
            T    L++ + +++      A   +     ++TY+   E+  R A  +   G+N    +
Sbjct: 20  GTAGEQLHKAMKRYALVPGTIAFTDAHIEV-NITYAEYFEMSVRLAEAMKRYGLNTNHRI 78

Query: 59  ALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQA 118
            +   N+++F +  L  +      AP N  Y   E    ++ S+  ++    +G      
Sbjct: 79  VVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILN 138

Query: 119 AASKLNISHATATLLDAD--------SELTLSLAHSESDTNAISKLTNDP-SDVALFLHT 169
              KL I      +                 S      +       + D    +AL +++
Sbjct: 139 VQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNS 198

Query: 170 SGTTSRPKGVPLTQNNLAASVSNIKSVY---KLTESDSTVIVLPLFHVHGMLAGLLSSFA 226
           SG+T  PKGV L         S+ +      ++    + + V+P  H  GM   L     
Sbjct: 199 SGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLIC 258

Query: 227 AGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPK-----L 281
               V +    RF    F + +  Y       VPT+      +       +  K     L
Sbjct: 259 GFRVVLMY---RFEEELFLRSLQDYKIQSALLVPTLF-SFFAKS-----TLIDKYDLSNL 309

Query: 282 RFIRSCSASLAPVILSRLEEAFG-APVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV 340
             I S  A L+  +   + + F    + + Y +TE T  +   P   +G  KPG+VG+ V
Sbjct: 310 HEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITP---EGDDKPGAVGKVV 366

Query: 341 -GQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF-GWFHTGDIGYF 397
              E  ++D + G       +GE+C+RGP +  GY NNPEA  +     GW H+GDI Y+
Sbjct: 367 PFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYW 426

Query: 398 DSDGYLHLVGRIKELINRGG 417
           D D +  +V R+K LI   G
Sbjct: 427 DEDEHFFIVDRLKSLIKYKG 446

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548

 Score =  313 bits (805), Expect = e-102
 Identities = 109/439 (24%), Positives = 177/439 (40%), Gaps = 38/439 (8%)

Query: 4   VTLIGLLNQVIDQFSSKRAL----SVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVA 59
            +    L + +++++   A+    +V+G  D +Y+   E        L   G+     +A
Sbjct: 23  GSAGTQLRKYMERYAKLGAIAFTNAVTGV-DYSYAEYLEKSCCLGKALQNYGLVVDGRIA 81

Query: 60  LTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAA 119
           L   N  EF I  +A +      AP N  YT  E    L  S+  ++ +  +G       
Sbjct: 82  LCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITV 141

Query: 120 ASKLNISHATATLLDAD--------SELTLSLAHSESDTNAISKLTNDP-SDVALFLHTS 170
              +        L                          ++   +  D    VAL +++S
Sbjct: 142 QKTVTTIKTIVILDSKVDYRGYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSS 201

Query: 171 GTTSRPKGVPLTQNNLAASVSNIKSVY---KLTESDSTVIVLPLFHVHGMLAGLLSSFAA 227
           G+T  PKGV LT  N+    S+ +      +++   + + V+P  H  GM   L      
Sbjct: 202 GSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLICG 261

Query: 228 GAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPK-----LR 282
              V L    +F   TF + +  Y  T    VPT+   +L++       +  K     L 
Sbjct: 262 FRVVMLT---KFDEETFLKTLQDYKCTSVILVPTLF-AILNKS-----ELLNKYDLSNLV 312

Query: 283 FIRSCSASLAPVILSRLEEAFG-APVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV- 340
            I S  A L+  +   +   F    V + Y +TE T  +   P   +G  KPG+ G+ V 
Sbjct: 313 EIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITP---EGDDKPGASGKVVP 369

Query: 341 GQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF-GWFHTGDIGYFD 398
             +  ++D +         +GEVC++GP + KGY NNPEA K      GW HTGDIGY+D
Sbjct: 370 LFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYD 429

Query: 399 SDGYLHLVGRIKELINRGG 417
            + +  +V R+K LI   G
Sbjct: 430 EEKHFFIVDRLKSLIKYKG 448

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979

 Score =  310 bits (795), Expect = 1e-96
 Identities = 125/440 (28%), Positives = 192/440 (43%), Gaps = 34/440 (7%)

Query: 2   EGVTLIGLLNQVIDQFSSKRAL--SVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVA 59
             ++L   + Q I +F++K  L    +G    TYS +H +  + A+     G+N  DVV 
Sbjct: 59  NHLSLHDYIFQNISEFATKPCLINGPTGH-VYTYSDVHVISRQIAANFHKLGVNQNDVVM 117

Query: 60  LTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAA 119
           L  PN  EFV+ FLA     ATA   N  +TP E       S +KL++T A      +  
Sbjct: 118 LLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPL 177

Query: 120 ASKLNI------SHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTT 173
            +   +       + +  + +     T     +   +  I  +   P DV    ++SGTT
Sbjct: 178 QNDDGVVIVCIDDNESVPIPEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTT 237

Query: 174 SRPKGVPLTQNNLAASVSNIKSV----YKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGA 229
             PKGV LT   L  SV+               D  + VLP+FH++ + + +L     GA
Sbjct: 238 GLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGA 297

Query: 230 A-VTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPK-----LRF 283
           A + +P   +F  +   + + +   T    VP I  + + +          K     +R 
Sbjct: 298 AILIMP---KFEINLLLELIQRCKVTVAPMVPPIV-LAIAKS-----SETEKYDLSSIRV 348

Query: 284 IRSCSASLAPVILSRLEEAF-GAPVLEAYAMTEATHLMSSNPL--PEDGPHKPGSVGRPV 340
           ++S +A L   +   +   F  A + + Y MTEA  +++ +     E  P K G+ G  V
Sbjct: 349 VKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVV 408

Query: 341 -GQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF-GWFHTGDIGYF 397
              E+ I+D + G        GE+CIRG  + KGY NNP A        GW HTGDIG  
Sbjct: 409 RNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLI 468

Query: 398 DSDGYLHLVGRIKELINRGG 417
           D D  L +V R+KELI   G
Sbjct: 469 DDDDELFIVDRLKELIKYKG 488

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570

 Score =  229 bits (587), Expect = 9e-70
 Identities = 85/402 (21%), Positives = 154/402 (38%), Gaps = 25/402 (6%)

Query: 30  DLTYSRIHELVERAASRLVAA-GINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAA 88
              +  + E  ++AA+ L  A G+  GD VA+  P   E+ ++ L  IRA     P    
Sbjct: 73  MWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQ 132

Query: 89  YTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLS---LAH 145
               +  + L  S++K ++   E        AS+         + +   +  L+   L +
Sbjct: 133 MKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSCDGWLNFKKLLN 192

Query: 146 SESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDST 205
             S T+   +  +   + +    TSGT+  PK    + ++L            L  SD  
Sbjct: 193 EASTTHHCVETGSQ--EASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWTGLQASDIM 250

Query: 206 VIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNAT-WYTAVPTIHQ 264
             +     +  +L  L+  +A GA   +    +F      + +  Y       A P ++ 
Sbjct: 251 WTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGA-PIVY- 308

Query: 265 IVLDRHVAKPEPVYPKLRFIRSC-SA--SLAPVILSRLEEAFGAPVLEAYAMTEATHLMS 321
               R + + +    K   +++C +   SL P  L       G  + E+Y  TE      
Sbjct: 309 ----RMLLQQDLSSYKFPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCM 364

Query: 322 SNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVT-----KGYKN 375
            +        KPG +G      ++ I+D+ G     G +G++ IR   +       GY +
Sbjct: 365 VSK---TMKIKPGYMGTAASCYDVQIIDDKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVD 421

Query: 376 NPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
           NP+   +     ++  GD G  D DGY   +GR  ++IN  G
Sbjct: 422 NPDKTAANIRGDFWLLGDRGIKDEDGYFQFMGRADDIINSSG 463

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score =  219 bits (560), Expect = 1e-65
 Identities = 88/412 (21%), Positives = 155/412 (37%), Gaps = 45/412 (10%)

Query: 30  DLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAY 89
             T+  +    ++AA+  V  GI  GD V LT  +  +F    L + +  A A P     
Sbjct: 86  IFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHML 145

Query: 90  TPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSEL--------TL 141
              +  + +  +  K+++  AE +   Q   +                ++          
Sbjct: 146 KTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDVLEGWIDFRKE 205

Query: 142 SLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTE 201
               S        +++    D+ L   +SGT   PK V          +   K    + +
Sbjct: 206 LEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVED 265

Query: 202 SDSTVIVLPLFHVH----------GMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKY 251
                       +H           +   L   + AG AV +    RF A    +   KY
Sbjct: 266 DG----------LHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKY 315

Query: 252 NAT-WYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSA--SLAPVILSRLEEAFGAPVL 308
             T +    PTI++ ++   ++        L++     A   L P + +R  E  G  ++
Sbjct: 316 GVTTFCAP-PTIYRFLIKEDLSHYNF--STLKYA--VVAGEPLNPEVFNRFLEFTGIKLM 370

Query: 309 EAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGP 367
           E +  TE    +++ P       KPGS+G+P  G +I ++D  G   E G +GE+ I   
Sbjct: 371 EGFGQTETVVTIATFP---WMEPKPGSIGKPTPGYKIELMDRDGRLCEVGEEGEIVINTM 427

Query: 368 N-----VTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELIN 414
                 +   Y  +PE  +  +  G++HTGD+ + D DGYL  VGR  ++I 
Sbjct: 428 EGKPVGLFVHYGKDPERTEETWHDGYYHTGDMAWMDEDGYLWFVGRADDIIK 479

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590

 Score =  204 bits (522), Expect = 3e-60
 Identities = 100/480 (20%), Positives = 187/480 (38%), Gaps = 78/480 (16%)

Query: 1   MEGVTLIGLLNQVIDQFSSKRALSV---SGKFDLTYSRIHELVERAASRLVAAGINAGDV 57
           ++  +L+ ++        +K++ +      +  +TY ++ +  +  A+ L A G   GD 
Sbjct: 8   LQCQSLVDVVRLRALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQAEGAKPGDR 67

Query: 58  VALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFY---LSDSESKLLLTPAEGNA 114
           V L F   +  +  FL  + A   A P+         +     +++S+  ++L  A+   
Sbjct: 68  VLLLFAPGLPLIQAFLGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIK 127

Query: 115 AAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTS 174
              A     N        +  +  + L+ + S   T+         +D+A   +TSG+T 
Sbjct: 128 KFTADELNTNPKFLKIPAIALE-SIELNRSSSWQPTSI------KSNDIAFLQYTSGSTM 180

Query: 175 RPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLP 234
            PKGV ++ +NL  +++ I + + + +       LP  H  G++  +L+    G    + 
Sbjct: 181 HPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMM 240

Query: 235 AAGRFSAS-TFWQDMI-KYNATWYTAVPT-IHQIVLDRHVAKP----------------E 275
           +   F  +   W   I KY AT  +  P   +   + R   +                 E
Sbjct: 241 SPFSFLQNPLSWLKHITKYKAT-ISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAE 299

Query: 276 PVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPED------- 328
           PV  +   +     +       +  EAF  P    Y + EAT L++              
Sbjct: 300 PVREET--MEHFYQAFKEFGFRK--EAF-YP---CYGLAEATLLVTGGTPGSSYKTLTLA 351

Query: 329 ------------GPHKPG-----SVGRPVGQEIAILD-EIGVPQEGGAKGEVCIRGPNVT 370
                         + PG     S G P+ QE+ I+D +  +P +    GE+ ++  +V 
Sbjct: 352 KEQFQDHRVHFADDNSPGSYKLVSSGNPI-QEVKIIDPDTLIPCDFDQVGEIWVQSNSVA 410

Query: 371 KGYKNNPEANKSAFLF---------GWFHTGDIGYFDSDGYLHLVGRIKELIN-RGGNLH 420
           KGY N PE  + AF            +  TGD+G+   +  L++ GRIK+LI   G N +
Sbjct: 411 KGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIIIYGKNHY 469

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541

 Score =  199 bits (509), Expect = 1e-58
 Identities = 111/441 (25%), Positives = 184/441 (41%), Gaps = 34/441 (7%)

Query: 5   TLIGLLNQVIDQFSSKRALSVSGKFDL---TYSRIHELVERAASRLVAAGINAGDVVALT 61
            L   L +    F  K  +S     ++   TY+ +++   R    L A G+  GD VA  
Sbjct: 19  NLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATL 78

Query: 62  FPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAAS 121
             N    +  + AV    A     N   +P E  + L+ +E K+LL         +A   
Sbjct: 79  GFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRG 138

Query: 122 KLNISHATATLLDADSELTLS---LAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKG 178
           +L        + +   E  L+       E+D   +              +T+GTT  PKG
Sbjct: 139 ELKTVQHFVVMDEKAPEGYLAYEEALGEEADPVRV-----PERAACGMAYTTGTTGLPKG 193

Query: 179 VPLT--QNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGL-LSSFAAGAAVTLPA 235
           V  +     L +  +++     L+E D  + V+P+FHV+     L  ++   GA   LP 
Sbjct: 194 VVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAW--CLPYAATLVGAKQVLPG 251

Query: 236 AGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVI 295
             R   ++  +       T+   VPT+   + D ++         LR +    ++    +
Sbjct: 252 P-RLDPASLVELFDGEGVTFTAGVPTVWLALAD-YLESTGHRLKTLRRLVVGGSAAPRSL 309

Query: 296 LSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPG--------SVGRPV-GQEIAI 346
           ++R E   G  V + Y +TE + ++  N +                   G P+    + +
Sbjct: 310 IARFER-MGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRV 368

Query: 347 LDEIG--VPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF-GWFHTGDIGYFDSDGYL 403
            DE G  VP++G A GEV ++GP +T GY  N EA +SA    G+F TGDI  +D +GY+
Sbjct: 369 ADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYV 428

Query: 404 HLVGRIKELINRGGNLHESIS 424
            +  R+K+LI  GG   E IS
Sbjct: 429 EIKDRLKDLIKSGG---EWIS 446

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480

 Score =  190 bits (485), Expect = 1e-55
 Identities = 87/436 (19%), Positives = 157/436 (36%), Gaps = 72/436 (16%)

Query: 31  LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
           LT+S+++      A  L   G   GD V ++ P  +E+V+ FL  ++A   A PL+    
Sbjct: 59  LTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFLGALQAGRIAVPLSVPQG 117

Query: 91  PDEFE---FYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSE 147
               E     LSDS    +LT +          ++        ++++ D  L L   +  
Sbjct: 118 GVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESP-PSIIEVD-LLDLDAPNGY 175

Query: 148 SDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLT------E 201
           +          +    A   +TSG+T  P GV ++  N+  +   + S Y          
Sbjct: 176 TFKED------EYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPP 229

Query: 202 SDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTF-WQDMI-KYNATWYTAV 259
           + + V  LP +H  G++ G+ +    G    L +   F      W  ++       ++A 
Sbjct: 230 NSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAA 288

Query: 260 PT-IHQIVLDRHVAKPEPVYP----KLRFIRSCSASLAPVILSRLEEAFGAP-------V 307
           P    ++   R     + +       +  I S S  +    + R  + F A        +
Sbjct: 289 PNFAFELAARR--TTDDDMAGRDLGNILTILSGSERVQAATIKRFADRF-ARFNLQERVI 345

Query: 308 LEAYAMTEATHLMSSN----------------------PLPEDGPHKPGSVGRPVGQEIA 345
             +Y + EAT  ++++                      P    G     S   P    + 
Sbjct: 346 RPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRSPIVR 405

Query: 346 ILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF------------GWFHTG 392
           I+D +  +    G  GE+ + G NV  GY   P+ ++  F               W  TG
Sbjct: 406 IVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTG 465

Query: 393 DIGYFDSDGYLHLVGR 408
           D G+   DG + ++GR
Sbjct: 466 DSGFVT-DGKMFIIGR 480

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304

 Score =  129 bits (327), Expect = 2e-32
 Identities = 98/401 (24%), Positives = 153/401 (38%), Gaps = 52/401 (12%)

Query: 31  LTYSRIHELVERA---ASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNA 87
           L+Y    EL E A   A RL   G   G VVAL    ++E VI  L V++A A   P++ 
Sbjct: 490 LSY---RELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDP 546

Query: 88  AYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSE 147
               D   + L+DS +  LLT        Q    +      T T L  D +        E
Sbjct: 547 KLPEDRISYMLADSAAACLLT-------HQEMKEQAAELPYTGTTLFIDDQTRF----EE 595

Query: 148 SDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVI 207
             ++  + +   P+D A  ++TSGTT +PKG   T  N+   V ++      ++ D    
Sbjct: 596 QASDPATAID--PNDPAYIMYTSGTTGKPKGNITTHANIQGLVKHVDY-MAFSDQD---- 648

Query: 208 VLPLFH-------VHGMLAGLLSSFAAGAAVTL-PAAGRFSASTFWQDMIKYNATWYTAV 259
                             A +L+     A + +               +++ N     A 
Sbjct: 649 TFLSVSNYAFDAFTFDFYASMLN----AARLIIADEHTLLDTERLTDLILQENVNVMFAT 704

Query: 260 PTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLE-AYAMTEATH 318
             +  ++ D            LR I       +   + +     G   L   Y  TE T 
Sbjct: 705 TALFNLLTDAGEDWM----KGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGT- 759

Query: 319 LMSSNPLPEDGPHKPGSV--GRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKN 375
           + ++  +  D P    S+  G+P+    + IL+E    Q  GA GE+CI G  V+KGY N
Sbjct: 760 VFATAHVVHDLPDSISSLPIGKPISNASVYILNEQSQLQPFGAVGELCISGMGVSKGYVN 819

Query: 376 NPEANKSAFL---FG----WFHTGDIGYFDSDGYLHLVGRI 409
             +  K  F+   F      + TGD+  +  DG +   GRI
Sbjct: 820 RADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRI 860

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512

 Score =  124 bits (313), Expect = 4e-31
 Identities = 83/400 (20%), Positives = 154/400 (38%), Gaps = 49/400 (12%)

Query: 31  LTYSRIHELVERA---ASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNA 87
           +TY    +L E +   A  + +   +    + +      E +I FL  ++A     P++ 
Sbjct: 27  ITY---KQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAYIPVDL 83

Query: 88  AYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSE 147
           +   D  +    +S +KLLL+           A+ + ++     ++  D+   +   H  
Sbjct: 84  SIPADRVQRIAENSGAKLLLS-----------ATAVTVTDLPVRIVSEDNLKDIFFTHKG 132

Query: 148 SDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVI 207
           +  N    +     +    ++TSG+T  PKGV +T N L +        + L        
Sbjct: 133 NTPNPEHAVK--GDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQ---- 186

Query: 208 VLPLFH-------VHGMLAGLLSSFAAGAAVTL-PAAGRFSASTFWQDMIKYNATWYTAV 259
           V            V  +   L++    G  +              +  + + +   +T+ 
Sbjct: 187 VFLNQAPFSFDLSVMDIYPSLVT----GGTLWAIDKDMIARPKDLFASLEQSDIQVWTST 242

Query: 260 PTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLE-AYAMTEATH 318
           P+  ++ L    +  E + P ++    C   L   +  +L E F    +   Y  TEAT 
Sbjct: 243 PSFAEMCLM-EASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATV 301

Query: 319 LMSSNPLPEDGPHKPGSVGRPVGQEIA-----ILDEIGVPQEGGAKGEVCIRGPNVTKGY 373
            ++   + E+   +  S+  PVG   +     I+ E G     G KGE+ I GP+V+ GY
Sbjct: 302 AVTGIHVTEEVLDQYKSL--PVGYCKSDCRLLIMKEDGTIAPDGEKGEIVIVGPSVSVGY 359

Query: 374 KNNPEANKSAFLFG----WFHTGDIGYFDSDGYLHLVGRI 409
             +PE  + AF        + TGD GY   +G L   GR+
Sbjct: 360 LGSPELTEKAFTMIDGERAYKTGDAGYV-ENGLLFYNGRL 398

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521

 Score =  121 bits (305), Expect = 4e-30
 Identities = 80/400 (20%), Positives = 140/400 (35%), Gaps = 48/400 (12%)

Query: 31  LTYSRIHELVERA---ASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNA 87
            TY    +L   +   A+ + +  + A   V +    T + +  F+A+ ++     P++ 
Sbjct: 30  RTYG---QLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSGHAYIPVDV 86

Query: 88  AYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSE 147
              P+     +  ++  L++               L I   +   L       L+    E
Sbjct: 87  HSAPERILAIIEIAKPSLIIA---------IEEFPLTIEGISLVSLSEIESAKLA----E 133

Query: 148 SDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVS--NIKSVYKLTESDST 205
                   +     D    + TSGTT +PKGV ++ +NL +  +     + + + +    
Sbjct: 134 MPYERTHSVK--GDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQP-- 189

Query: 206 VIVLPLFH-------VHGMLAGLLSSFAAGAA-VTLPAAGRFSASTFWQDMIKYNATWYT 257
              +           V      L      G     LP          +  + +     +T
Sbjct: 190 --QMLAQPPYSFDLSVMYWAPTLAL----GGTLFALPKELVADFKQLFTTIAQLPVGIWT 243

Query: 258 AVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLE-AYAMTEA 316
           + P+   + +       +   P L         L      +L E F +  +  AY  TEA
Sbjct: 244 STPSFADMAML-SDDFCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEA 302

Query: 317 THLMSSNPLPEDGPHKPGSV--GRPVG-QEIAILDEIGVPQEGGAKGEVCIRGPNVTKGY 373
           T  +S+  +  +       +  G P       I+DE G     G +GE+ + GP V+KGY
Sbjct: 303 TVALSAIEITREMVDNYTRLPIGYPKPDSPTYIIDEDGKELSSGEQGEIIVTGPAVSKGY 362

Query: 374 KNNPEANKSAFL---FG-WFHTGDIGYFDSDGYLHLVGRI 409
            NNPE    AF        +HTGDIG    D  L   GR+
Sbjct: 363 LNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRL 402

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563

 Score =  119 bits (301), Expect = 2e-29
 Identities = 87/398 (21%), Positives = 160/398 (40%), Gaps = 52/398 (13%)

Query: 31  LTYSRIHELVERA---ASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNA 87
           LTY   HEL  +A   A   +  GI    +V +    +++  I  LAV++A     P++ 
Sbjct: 65  LTY---HELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDI 121

Query: 88  AYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSE 147
            Y  +  ++ L DS++++LLT        +     ++       +   + +   ++    
Sbjct: 122 EYPKERIQYILDDSQARMLLT-------QKHLVHLIHNIQFNGQVEIFEED---TIKI-R 170

Query: 148 SDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVI 207
             TN         +D+A  ++TSGTT  PKG  L    ++      ++   +TE D    
Sbjct: 171 EGTNLHVPSK--STDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKD---- 224

Query: 208 VLPLFH-------VHGMLAGLLSSFAAGAAVTL-PAAGRFSASTFWQDMIKYNATWYTAV 259
            +  F        V  M   LL+    GA++ +           F Q + +   T  T  
Sbjct: 225 RIGQFASISFDASVWEMFMALLT----GASLYIILKDTINDFVKFEQYINQKEITVITLP 280

Query: 260 PTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHL 319
           PT    +    +         ++ + +  ++ +P ++++ +E      + AY  TE T  
Sbjct: 281 PTYVVHLDPERI-------LSIQTLITAGSATSPSLVNKWKE--KVTYINAYGPTETTIC 331

Query: 320 MSSNPLPEDGPHKPGSVGRPVGQ-EIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPE 378
            ++    ++       +G P+   +I I+DE    +  G  GE+CI G  + +GY   PE
Sbjct: 332 ATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGYWKRPE 391

Query: 379 ANKSAFLFGWFH-------TGDIGYFDSDGYLHLVGRI 409
                F+   F        TGD   + SDG +  +GRI
Sbjct: 392 LTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRI 429

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562

 Score =  116 bits (293), Expect = 2e-28
 Identities = 75/405 (18%), Positives = 141/405 (34%), Gaps = 60/405 (14%)

Query: 31  LTYSRIHELVERA---ASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNA 87
            TY    +L E A   A+ ++ A +  G  +A++   ++    + + ++++  T  P+ A
Sbjct: 56  WTY---KKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAFAIIVGIMKSGNTYVPIEA 111

Query: 88  AYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSE 147
               D   F L DS + +                 + +   T  L   +     +L+ ++
Sbjct: 112 GLPNDRKSFLLRDSRAAMAFV-------CDNNFDGVELPPETKVLDTKNQSFIENLS-TQ 163

Query: 148 SDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLA--------ASVSNIKSVYKL 199
             ++ ++      +  A  L+TSG+T  PKGV ++++NL+           +      +L
Sbjct: 164 DTSDILNNYP--ENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLEL 221

Query: 200 TESDSTVIVLPL---FHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWY 256
                 + +       H+  M          G                 +   +   T  
Sbjct: 222 GGVGKFLCLASRAFDVHIGEMFLAWRF----GLCAVTGERLS-MLDDLPRTFRELGVTHA 276

Query: 257 TAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEA 316
             VP+    +LD+    PE   P L ++      + P        +    ++  Y  TE 
Sbjct: 277 GIVPS----LLDQTGLVPEDA-PHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEV 331

Query: 317 THLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDE-------IGVPQEGGAKGEVCIRGPN 368
           T   S+  +  D   +   +G P+      +L          G+       GE+ I G  
Sbjct: 332 TIGCSAGRILPDSDTRC--IGHPLGDSVAHVLAPGSNEHVKKGMA------GELVIEGSL 383

Query: 369 VTKGYKNNPEANKSAFLFGWFH----TGDIGYFDSDGYLHLVGRI 409
           V  GY N P+A    F          TGDI   D+D  +  +GR 
Sbjct: 384 VANGYLNRPDAKG--FCDINGRKMYRTGDIVRMDADSSILFLGRK 426

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511

 Score =  114 bits (289), Expect = 5e-28
 Identities = 80/404 (19%), Positives = 149/404 (36%), Gaps = 58/404 (14%)

Query: 31  LTYSRIHELVERA---ASRLVAAGINAGDV-VALTFPNTVEFVIMFLAVIRARATAAPLN 86
           LTY    EL E++   A+ +           + +        ++ FL  ++A     P++
Sbjct: 27  LTY---QELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHPYIPVD 83

Query: 87  AAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHS 146
            +   +     +  S ++LL+          AA   ++        + A+  L     + 
Sbjct: 84  LSIPSERIAKIIESSGAELLIH---------AAGLSIDAVGQQIQTVSAEELL----ENE 130

Query: 147 ESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTV 206
               +    +     +    ++TSG+T  PKGV ++  NL +    I + + ++      
Sbjct: 131 GGSVSQDQWVK--EHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGK--- 185

Query: 207 IVLPLFH-------VHGMLAGLLSSFAAGAAVTL-PAAGRFSASTFWQDMIKYNATWYTA 258
            +            V  +   L S    G  +              ++++ K     +T+
Sbjct: 186 -IFLNQAPFSFDLSVMDLYPCLQS----GGTLHCVTKDAVNKPKVLFEELKKSGLNVWTS 240

Query: 259 VPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLE-AYAMTEAT 317
            P+  Q+ L       + + P       C   L   +   L E F    +   Y  TEAT
Sbjct: 241 TPSFVQMCLM-DPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEAT 299

Query: 318 HLMSSNPLPEDGPHKPGSVGRPVGQEIA-----ILDEIGVPQEGGAKGEVCIRGPNVTKG 372
             ++S  +  D   +  S+  PVG         I+DE G P   G KGE+ I GP+V++G
Sbjct: 300 VAVTSVEITNDVISRSESL--PVGFAKPDMNIFIMDEEGQPLPEGEKGEIVIAGPSVSRG 357

Query: 373 YKNNPE-------ANKSAFLFGWFHTGDIGYFDSDGYLHLVGRI 409
           Y   PE       +++  +    + TGD G+   DG +   GR+
Sbjct: 358 YLGEPELTEKAFFSHEGQWA---YRTGDAGFI-QDGQIFCQGRL 397

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620

 Score =  110 bits (278), Expect = 3e-26
 Identities = 63/408 (15%), Positives = 125/408 (30%), Gaps = 59/408 (14%)

Query: 25  VSGKFDLTYSRIHELVERA---ASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARAT 81
                 + Y    +L++ A   +  L+      G  + +    + E +   LA++ +   
Sbjct: 47  RDRFGSVDY---RQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILLSGHH 103

Query: 82  AAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTL 141
              ++               + +L+L                     T T  +    + +
Sbjct: 104 YLYIDLKQPAAWNAELCRQVDCRLILD-----------------CSTTPTPANGLPCVPV 146

Query: 142 SLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTE 201
               +   + A          +A    +SGTT RPK +  T   +       +S      
Sbjct: 147 RHLPAAPASVARPCFA--ADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAP 203

Query: 202 SDSTVIVLPLFHVHG-------MLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNAT 254
                    +            +   LL+    G    L   G        Q + +  A 
Sbjct: 204 QM----RFLVNSPLSFDAATLEIWGALLN----GGCCVLNDLGPLDPGVLRQLIGERGAD 255

Query: 255 WYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLE-AYAM 313
                 ++   ++D            LR + +    L+   + R         L   Y  
Sbjct: 256 SAWLTASLFNTLVDLDPDCL----GGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGP 311

Query: 314 TEATHLMSSNPLPEDGPHKPGSV--GRPV-GQEIAILDEIGVP-QEGGAKGEVCIRGPNV 369
           TE T     + + +D       +  G+ + G  + +LDE G    E    GE+   G  +
Sbjct: 312 TENTTFTCCHVVTDDDLE-EDDIPIGKAIAGTAVLLLDEHGQEIAEPDRAGEIVAFGAGL 370

Query: 370 TKGYKNNPEANKSAFL---FG-----WFHTGDIGYFDSDGYLHLVGRI 409
            +GY+N+    +++F+   +       + TGD   +D  G L  +GR 
Sbjct: 371 AQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRG 418

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652

 Score = 87.6 bits (218), Expect = 9e-19
 Identities = 116/459 (25%), Positives = 174/459 (37%), Gaps = 120/459 (26%)

Query: 31  LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
           ++Y  +H  V R A+ L+  GI  GDVVA+  P   E  +  LA  R  A  + +   ++
Sbjct: 108 ISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFS 167

Query: 91  PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDT 150
           P+     + DS S+L++T  EG  A ++   K N+  A         E  + L  + SD 
Sbjct: 168 PEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDI 227

Query: 151 N-----------AISKLTN----------DPSDVALF-LHTSGTTSRPKGVPLTQN--NL 186
           +            I K +           DP    LF L+TSG+T +PKGV  T     +
Sbjct: 228 DWQEGRDLWWRDLIEKASPEHQPEAMNAEDP----LFILYTSGSTGKPKGVLHTTGGYLV 283

Query: 187 AASVSNIKSVYKLTESD--------------STVIVLPLFHVHGMLAGLLSSFAAGAAV- 231
            A+ +  K V+     D              S ++  PL              A GA   
Sbjct: 284 YAATTF-KYVFDYHPGDIYWCTADVGWVTGHSYLLYGPL--------------ACGATTL 328

Query: 232 ------TLPAAGRFSASTFWQDMIKYNAT-WYTAVPT-IHQIVLDRHVAKPEPVYPKLRF 283
                   P   R       Q + K+     YTA PT I      R +        +   
Sbjct: 329 MFEGVPNWPTPARM-----CQVVDKHQVNILYTA-PTAI------RALMAEGDKAIE-GT 375

Query: 284 IRSCSASLAPVILSRL---------EEA-------FG---APVLEAYAMTEAT--HLMSS 322
            RS   SL      R+          EA        G    PV++ +  TE T   +++ 
Sbjct: 376 DRS---SL------RILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTE-TGGFMIT- 424

Query: 323 NPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRG--PNVTKGYKNNPEA 379
            PLP     K GS  RP  G + A++D  G PQEG  +G + I    P   +    + E 
Sbjct: 425 -PLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSWPGQARTLFGDHER 483

Query: 380 NK----SAFLFGWFHTGDIGYFDSDGYLHLVGRIKELIN 414
            +    S F    + +GD    D DGY  + GR+ +++N
Sbjct: 484 FEQTYFSTFK-NMYFSGDGARRDEDGYYWITGRVDDVLN 521

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369

 Score = 79.4 bits (195), Expect = 2e-16
 Identities = 32/248 (12%), Positives = 66/248 (26%), Gaps = 32/248 (12%)

Query: 159 DPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKL---TESDSTVIVLPLF-HV 214
                     + GTT  PK V      + A +S   S Y+      S +T+  +P   H+
Sbjct: 89  PADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHI 148

Query: 215 HGMLAGLLSSFAAGAAVT----------LPAAGRFSASTFWQDMIK---------YNATW 255
            G +    +    G   +            + G  +    +   +           +  +
Sbjct: 149 VGAINKERALRLGGMFFSIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRF 208

Query: 256 YTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF--GAPVLEAYAM 313
               P + +  L +       +   L  I      L    +  +            +Y  
Sbjct: 209 LVTTPPVLRE-LLKRPEVVLQMKQSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGS 267

Query: 314 TEATHLMSSNPLPEDGPHKPGSVGRPVGQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKG 372
           T A  +  S  +  +                 ++D       E G +G V +   +++  
Sbjct: 268 TSALGVSRSLLITSESQQ-VIYDSFSPFITYDVVDSITAQTVEYGERGNVIVT--HLSPW 324

Query: 373 Y--KNNPE 378
                  E
Sbjct: 325 AFYPRVAE 332

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663

 Score = 64.1 bits (157), Expect = 4e-11
 Identities = 99/465 (21%), Positives = 170/465 (36%), Gaps = 129/465 (27%)

Query: 31  LTYSRIHELVERAASRL-VAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAY 89
           +TY  + E V + A  L  + G+  GD VA+  P   E +I  LA+ R  A  + + A +
Sbjct: 114 ITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGF 173

Query: 90  TPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADS-ELTLSLAHSES 148
           + +     ++D +SK+++T  E N   +   +K  +  A   L +       L    + +
Sbjct: 174 SSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDA---LRETPGVRHVLVYRKTNN 230

Query: 149 DT------------NAISKLTN----------DPSDVALF-LHTSGTTSRPKGVPLTQN- 184
            +                K             DP    LF L+TSG+T  PKGV  +   
Sbjct: 231 PSVAFHAPRDLDWATEKKKYKTYYPCTPVDSEDP----LFLLYTSGSTGAPKGVQHSTAG 286

Query: 185 -NLAASVSNIKSVYKLTESD--------------STVIVLPLFHVHGMLAGLLSSFAAGA 229
             L A ++  +  +   + D              + V+  PL                G 
Sbjct: 287 YLLGALLTM-RYTFDTHQEDVFFTAGDIGWITGHTYVVYGPL--------------LYGC 331

Query: 230 AV-------TLPAAGRFSASTFWQDMIKYNAT-WYTAVPT-IHQIVLDRHVAKPEPVYPK 280
           A          P   R+     W  + ++  T +Y A PT +      R + +    Y +
Sbjct: 332 ATLVFEGTPAYPNYSRY-----WDIIDEHKVTQFYVA-PTAL------RLLKRAGDSYIE 379

Query: 281 LRFIRSCSASLAPVILSRL---------EEA-------FG---APVLEAYAMTEAT--HL 319
                    SL      R           E         G    P+++ Y  TE +  HL
Sbjct: 380 -NHSLK---SL------RCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTE-SGSHL 428

Query: 320 MSSNPLP-EDGPHKPGSVGRPV-GQEIAILD-EIGVPQEGG-AKGEVCIRG--PNVTKGY 373
           ++  PL     P KPGS   P  G +  +LD   G       A+G + ++   P+  +  
Sbjct: 429 VT--PLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTI 486

Query: 374 KNNPEANK----SAFLFGWFHTGDIGYFDSDGYLHLVGRIKELIN 414
             N +       + +  G++ TGD    D DGY+ ++GR+ +++N
Sbjct: 487 WKNHDRYLDTYLNPYP-GYYFTGDGAAKDKDGYIWILGRVDDVVN 530

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.1 bits (129), Expect = 7e-08
 Identities = 50/363 (13%), Positives = 91/363 (25%), Gaps = 100/363 (27%)

Query: 85  LNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLA 144
            +     D  +  LS  E   ++     +A +     +L       TLL    E+     
Sbjct: 33  FDCKDVQDMPKSILSKEEIDHII--MSKDAVSGT--LRLFW-----TLLSKQEEMVQKFV 83

Query: 145 HSESDTN------AISKLTNDPS-DVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVY 197
                 N       I      PS    +++               + N    VS ++   
Sbjct: 84  EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN-DNQVFAKYN----VSRLQPYL 138

Query: 198 KLTE-----SDSTVIVLPLFHVHGML-AGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKY 251
           KL +       +  ++     + G+L +G  +  A    ++     +     FW ++   
Sbjct: 139 KLRQALLELRPAKNVL-----IDGVLGSGK-TWVALDVCLSYKVQCKMDFKIFWLNLKNC 192

Query: 252 NATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAY 311
           N                     PE V   L  ++     + P   SR + +    +    
Sbjct: 193 N--------------------SPETV---LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229

Query: 312 AMTEATHLMSSNPLPEDGPHKPGSVGRPVGQEIAILDEIGVPQEGGAKGEVCIRGPNVTK 371
              E   L+ S P                   + +L                    NV  
Sbjct: 230 IQAELRRLLKSKPYENC---------------LLVLL-------------------NV-- 253

Query: 372 GYKNNPEANKSAFLFG---WFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLA 428
               N +A   AF         T      D            +  +      E  SL   
Sbjct: 254 ---QNAKAWN-AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL-L 308

Query: 429 KFI 431
           K++
Sbjct: 309 KYL 311

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* Length = 437

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 35/226 (15%), Positives = 71/226 (31%), Gaps = 34/226 (15%)

Query: 156 LTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYK---LTESDSTVIVLPLF 212
                  ++    +SGTT +P  V  T  ++    + +    +       D   +     
Sbjct: 85  FAVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYG-- 142

Query: 213 HVHGMLAGLLSSFAA----GAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLD 268
             +G+  G L +       G  V +P  G  +     Q +  +        P+    + D
Sbjct: 143 --YGLFTGGLGAHYGAERAGLTV-IPFGGGQTEKQ-VQLIQDFRPDIIMVTPSYMLSIAD 198

Query: 269 RHVAKPEPVYPKLRFIRS--CSA-SLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPL 325
               + + + P    +R     A      +   +E+  G   ++ Y ++E      ++  
Sbjct: 199 --EIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSEVMGPGVASEC 256

Query: 326 PE--DGPHKPGSVGRPVGQEIAILDEI-----GVPQEGGAKGEVCI 364
            E  DGP         + ++     EI     G     G  GE+  
Sbjct: 257 VETKDGPT--------IWEDHFYP-EIIDPETGEVLPDGELGELVF 293

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} Length = 443

 Score = 40.8 bits (96), Expect = 6e-04
 Identities = 35/226 (15%), Positives = 71/226 (31%), Gaps = 34/226 (15%)

Query: 156 LTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYK---LTESDSTVIVLPLF 212
                  V     +SGTT +P  V  T  ++    +      +       D T+     +
Sbjct: 87  FAVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGD-TLHNAFGY 145

Query: 213 HV----HGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLD 268
            +     G+  G       G  V +P +G  +     Q +  +        P+    ++D
Sbjct: 146 GLFTGGLGIHYGAE---RLGCMV-VPMSGGQTEKQ-VQLIRDFEPKIILVTPSYMLNLID 200

Query: 269 RHVAKPEPVYPKLRFIRS--CSA-SLAPVILSRLEEAFGAPVLEAYAMTEA--THLMSSN 323
                 + + P    ++     A      + + +E   G   L+ Y ++E     +    
Sbjct: 201 --EMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSEVMGPGVACEC 258

Query: 324 PLPEDGPHKPGSVGRPVGQEIAILDEI-----GVPQEGGAKGEVCI 364
              +DGP         + ++     EI     G     G++GE+  
Sbjct: 259 VETKDGPV--------IWEDHFYP-EIIDPVTGEVLPDGSQGELVF 295

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* Length = 436

 Score = 40.7 bits (96), Expect = 6e-04
 Identities = 30/170 (17%), Positives = 62/170 (36%), Gaps = 18/170 (10%)

Query: 156 LTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYK---LTESDSTVIVLPLF 212
             +   D      +SGTT  P  +  +Q++L +  + +        + ++D         
Sbjct: 81  AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSG-- 138

Query: 213 HVHGM-LAGLLSSFAA---GAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLD 268
             +GM   GL   + A   G    +PAA   S     + +  +  T   A+P+    + +
Sbjct: 139 --YGMFTGGLGFQYGAERLGCLT-VPAAAGNSKRQ-IKFISDFKTTALHAIPSYAIRLAE 194

Query: 269 RHVAKPEPVYPK---LRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTE 315
             V + E + P+   L+ +   +         ++E         ++ MTE
Sbjct: 195 --VFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTE 242

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	431
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	100.0
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	100.0
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	100.0
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	100.0
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	100.0
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	100.0
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	100.0
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	100.0
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	100.0
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	100.0
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	100.0
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	100.0
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	100.0
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	100.0
4gr5_A	570	Non-ribosomal peptide synthetase; MBTH-like domain	100.0
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	100.0
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	100.0
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	100.0
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	100.0
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	100.0
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	100.0
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	100.0
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	100.0
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	100.0
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	100.0
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	100.0
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	100.0
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	100.0
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	100.0
4gs5_A	358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	100.0
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	100.0
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	100.0
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	99.98
4eql_A	581	4-substituted benzoates-glutamate ligase GH3.12; f	98.94
4b2g_A	609	GH3-1 auxin conjugating enzyme; signaling protein,	98.92
4epl_A	581	Jasmonic acid-amido synthetase JAR1; ANL adenylati	98.86
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	93.57
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	93.34
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	93.25
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	86.37
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	84.71
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	84.61
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	84.58
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	83.95
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	83.67
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	83.17
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	81.95
4gs5_A	358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	80.68

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*

Probab=100.00  E-value=6.8e-72  Score=544.65  Aligned_cols=421  Identities=30%  Similarity=0.420  Sum_probs=359.6

Q ss_pred             cccHHHHHHHHHHhcCCcceEEec-CCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcE
Q 014065            3 GVTLIGLLNQVIDQFSSKRALSVS-GKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARAT   81 (431)
Q Consensus         3 ~~tl~~~l~~~a~~~p~~~a~~~~-~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~   81 (431)
                      ++|+.++|.++++++|+++|+++. +++++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|++
T Consensus        21 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~la~~~~Gav  100 (536)
T 3ni2_A           21 NLPLHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAI  100 (536)
T ss_dssp             SCCHHHHHTTTGGGSTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCE
T ss_pred             CCcHHHHHHHHhhcCCCceEEEECCCCCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCE
Confidence            578999999999999999999975 3579999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCccccccccccc-chhhhhhhccccccccccccCCCCC
Q 014065           82 AAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDA-DSELTLSLAHSESDTNAISKLTNDP  160 (431)
Q Consensus        82 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  160 (431)
                      ++|++|.++.+++.++++.++++++|++....+.+.............  +... .....+..... ......+.....+
T Consensus       101 ~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  177 (536)
T 3ni2_A          101 ITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESDVKVMC--VDSAPDGCLHFSELTQ-ADENEAPQVDISP  177 (536)
T ss_dssp             EEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHHTCEEEE--SSCCCTTCEETHHHHT-SCGGGCCCCCCCT
T ss_pred             EeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhcCceEEE--ecCCCCCccCHHHHhh-ccccccccCCCCc
Confidence            999999999999999999999999999998777766655443322111  1111 00001111100 1111223344578


Q ss_pred             CCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHH----HhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCCC
Q 014065          161 SDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKS----VYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAA  236 (431)
Q Consensus       161 ~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~----~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~  236 (431)
                      +++++++|||||||.||+|.++|.++++.+.....    .+++.+++++++.+|++|.+++...++.++..|+++++.+ 
T Consensus       178 ~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~-  256 (536)
T 3ni2_A          178 DDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMP-  256 (536)
T ss_dssp             TSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECS-
T ss_pred             cCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcC-
Confidence            99999999999999999999999999887765543    3467889999999999999999887899999999999987 


Q ss_pred             CCCChhhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHh-CCceecccCccc
Q 014065          237 GRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVLEAYAMTE  315 (431)
Q Consensus       237 ~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~-~~~i~~~yg~tE  315 (431)
                       .+++..+++.++++++|++.++|+++..+++..... ..+++++|.+++||+++++++.+.+++.+ ++++++.||+||
T Consensus       257 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE  334 (536)
T 3ni2_A          257 -KFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLD-KHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTE  334 (536)
T ss_dssp             -SCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGG-GSCCTTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEECGG
T ss_pred             -CCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccc-cCCCccceEEEECCCCCCHHHHHHHHHHCCCCCccccccccc
Confidence             789999999999999999999999999998876432 34578999999999999999999999999 899999999999


Q ss_pred             ccCcccCCCC--CCCCCCCCCCccccc-cceEEEEC-CCCCcCCCCceeeEEEeCCccccccccCcchhhhcc-cCCcee
Q 014065          316 ATHLMSSNPL--PEDGPHKPGSVGRPV-GQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAF-LFGWFH  390 (431)
Q Consensus       316 ~~~~~~~~~~--~~~~~~~~~~~G~~~-~~~~~i~d-~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~  390 (431)
                      ++++++.+..  .......++++|+|+ +++++|+| ++|++++.|+.|||+++|++++.||+++++.+++.| .+|||+
T Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~~g~~~  414 (536)
T 3ni2_A          335 AGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLH  414 (536)
T ss_dssp             GSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEE
T ss_pred             cchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCccEEEEeCcccchhhcCChhHHHhhccCCCceE
Confidence            9976554321  122345678999999 89999999 569999999999999999999999999999999988 579999


Q ss_pred             cCceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          391 TGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       391 TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      |||+|++|+||++++.||.||+||++|++|+|.|||.+.
T Consensus       415 TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l  453 (536)
T 3ni2_A          415 TGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALL  453 (536)
T ss_dssp             EEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHH
T ss_pred             cccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHH
Confidence            999999999999999999999999999999999999863

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}

Probab=100.00  E-value=3.1e-71  Score=543.25  Aligned_cols=421  Identities=22%  Similarity=0.341  Sum_probs=355.2

Q ss_pred             ccHH-HHHHHHHHhcCCcceEEec----CCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHh
Q 014065            4 VTLI-GLLNQVIDQFSSKRALSVS----GKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRA   78 (431)
Q Consensus         4 ~tl~-~~l~~~a~~~p~~~a~~~~----~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~   78 (431)
                      .|+. ++|+++|+++|+++|+++.    +++++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++
T Consensus        55 ~n~~~~~l~~~a~~~pd~~Al~~~~~~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~lA~~~~  134 (580)
T 3etc_A           55 FNFAYDVVDVYARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKL  134 (580)
T ss_dssp             CCHHHHTHHHHHHHCTTCEEEEEEESSSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHhhCCCCEEEEEEcCCCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhC
Confidence            4555 9999999999999999963    2368999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEecCCCCCHHHHHHHHhcCCceEEEecCCch--hHHHHHHHhcCcc-ccccccccc--chhhhhhhc--cccc-cc
Q 014065           79 RATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGN--AAAQAAASKLNIS-HATATLLDA--DSELTLSLA--HSES-DT  150 (431)
Q Consensus        79 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~--~~~~-~~  150 (431)
                      |++++|+++.++.+++.++++.++++++|++.+..  ..+.......... ...+.+...  .....+...  .... ..
T Consensus       135 Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (580)
T 3etc_A          135 GAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDVLEGWIDFRKELEESSPIFE  214 (580)
T ss_dssp             TCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESSSCCTTCEEHHHHHHHSCSCCC
T ss_pred             CEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCcceEEEEeCCccccccccHHHHHhhCCcccc
Confidence            99999999999999999999999999999988754  4444444333211 111111111  000011100  0000 00


Q ss_pred             cccccCCCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCE
Q 014065          151 NAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAA  230 (431)
Q Consensus       151 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~  230 (431)
                      .........++++++++|||||||.||+|.++|.+++..+.......++.+++++++..|++|..+++..++.++..|++
T Consensus       215 ~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~  294 (580)
T 3etc_A          215 RPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCA  294 (580)
T ss_dssp             CCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEEECCCTTSTHHHHHTTHHHHHTTCE
T ss_pred             cCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEEEeCChHHHHHHHHHHHHHHhCCcE
Confidence            11111346789999999999999999999999999888877766777889999999999999999888778899999999


Q ss_pred             EEeCCCCCCChhhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHhCCceecc
Q 014065          231 VTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEA  310 (431)
Q Consensus       231 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~i~~~  310 (431)
                      +++.+...+++..+++.|+++++|+++++|++++.+.+...  ...+++++|.+++||+++++++.+++.+.+++++++.
T Consensus       295 ~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~--~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~  372 (580)
T 3etc_A          295 VFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKEDL--SHYNFSTLKYAVVAGEPLNPEVFNRFLEFTGIKLMEG  372 (580)
T ss_dssp             EEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSCC-----CCTTCCEEEECSSCCCHHHHHHHHHHHSCCCEEE
T ss_pred             EEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhccc--ccCCCccceEEEEccCCCCHHHHHHHHHHhCCeEecc
Confidence            99875458899999999999999999999999999987632  2445799999999999999999999999999999999


Q ss_pred             cCcccccCcccCCCCCCCCCCCCCCccccc-cceEEEECCCCCcCCCCceeeEEEeC-----CccccccccCcchhhhcc
Q 014065          311 YAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRG-----PNVTKGYKNNPEANKSAF  384 (431)
Q Consensus       311 yg~tE~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d~~~~~~~~~~~Gel~v~~-----~~~~~gy~~~~~~~~~~~  384 (431)
                      ||+||++..++..+.   ....++++|+|+ +++++|+|++|++++.|+.|||++++     ++++.||+++++.+++.|
T Consensus       373 YG~TE~~~~~~~~~~---~~~~~~~~G~p~~~~~v~ivd~~g~~~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f  449 (580)
T 3etc_A          373 FGQTETVVTIATFPW---MEPKPGSIGKPTPGYKIELMDRDGRLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETW  449 (580)
T ss_dssp             ECCTTSSCCEECCTT---SCCCTTCCBEECTTCEEEEECTTSCBCCTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHE
T ss_pred             cccccccceeecCCC---CCCCCCccccCCCCCEEEEECCCCCCCCCCCceEEEEecCCCCCCeeeccccCCHhHHHhhc
Confidence            999999877666543   345678999999 89999999999999999999999997     789999999999999999


Q ss_pred             cCCceecCceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          385 LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       385 ~~g~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      .+|||+|||+|++|+||+++|+||.||+||++|++|+|.|||.+.
T Consensus       450 ~~gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l  494 (580)
T 3etc_A          450 HDGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESAL  494 (580)
T ss_dssp             ETTEEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHHHHHH
T ss_pred             CCCEEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHHHHHH
Confidence            999999999999999999999999999999999999999999864

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=100.00  E-value=7.1e-72  Score=545.20  Aligned_cols=421  Identities=22%  Similarity=0.304  Sum_probs=334.6

Q ss_pred             cccHHHHHHHHHHhcCCcceEEecCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcEE
Q 014065            3 GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATA   82 (431)
Q Consensus         3 ~~tl~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~   82 (431)
                      +.|+.++|+++++++|+++|+++.+ +++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++|+++
T Consensus        29 ~~tl~~~l~~~a~~~p~~~Al~~~~-~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~Gav~  107 (544)
T 3o83_A           29 DQPLTRILTVGVQSHPHSLAIICGE-RQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVV  107 (544)
T ss_dssp             CCCTTHHHHHHHHHCTTSEEEEETT-EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEE
T ss_pred             CCCHHHHHHHHHHhCCCceEEEcCC-CceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEE
Confidence            5789999999999999999999755 799999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHhcCCceEEEecCCch-----hHHHHHHHhcCcccccccccccchhhhhhhccccccccccccCC
Q 014065           83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGN-----AAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLT  157 (431)
Q Consensus        83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (431)
                      +|+++.++.+++.++++.++++++|++....     ...........................+................
T Consensus       108 vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (544)
T 3o83_A          108 LNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATDFGLLDWIETPAETFVDFSS  187 (544)
T ss_dssp             EECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTTSEEHHHHHHSCCSSCCCCCC
T ss_pred             ecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCccccchhhhhhccccccccccc
Confidence            9999999999999999999999999998653     22333322222111111111110000000000001111112234


Q ss_pred             CCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHHHHHH-HHHHHHhcCCEEEeCCC
Q 014065          158 NDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLA-GLLSSFAAGAAVTLPAA  236 (431)
Q Consensus       158 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~l~~G~~~~~~~~  236 (431)
                      ..++++++++|||||||.||+|.++|.++...+......+++.+++++++.+|++|.+++.. .++.++..|+++++.+ 
T Consensus       188 ~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~-  266 (544)
T 3o83_A          188 TPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAP-  266 (544)
T ss_dssp             CCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECS-
T ss_pred             CCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEECC-
Confidence            56789999999999999999999999999999999999999999999999999999998875 5888999999999987 


Q ss_pred             CCCChhhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHhCCceecccCcccc
Q 014065          237 GRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEA  316 (431)
Q Consensus       237 ~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~i~~~yg~tE~  316 (431)
                       .+++..+++.++++++|++.++|+++..+++..... ..+++++|.+++||+++++++.+++.+.+++++++.||+||+
T Consensus       267 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~  344 (544)
T 3o83_A          267 -NPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQY-KDQIQSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEG  344 (544)
T ss_dssp             -SCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTT-HHHHTTCCEEEEESSCCCHHHHTHHHHHHCSEEEEEEECTTS
T ss_pred             -CCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhc-cccCCcceEEEEcCCCCCHHHHHHHHHHhCCcEEeeeccccc
Confidence             679999999999999999999999999998876543 234789999999999999999999999999999999999998


Q ss_pred             cCcccCCCCCCCCCCCCCCccccc--cceEEEECCCCCcCCCCceeeEEEeCCccccccccCcchhhhcc-cCCceecCc
Q 014065          317 THLMSSNPLPEDGPHKPGSVGRPV--GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAF-LFGWFHTGD  393 (431)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~G~~~--~~~~~i~d~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD  393 (431)
                      +..+.....  .......++|+|+  +.+++|+|+++++++.|+.|||+++||+++.||+++++.+++.| .+|||+|||
T Consensus       345 ~~~~~~~~~--~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGD  422 (544)
T 3o83_A          345 LVNYTRLDD--SDEQIFTTQGRPISSDDEIKIVDEQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGD  422 (544)
T ss_dssp             CEEECCTTS--CHHHHHHCCCEESCTTCEEEEECTTSCBCCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEE
T ss_pred             cceeecCCC--chhhccCCCceecCCCcEEEEECCCCCCCCCCCeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCC
Confidence            855443321  1223346899996  58999999999999999999999999999999999999999999 579999999


Q ss_pred             eEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          394 IGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       394 ~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      +|++|+||++++.||.||+||++|++|+|.|||.+.
T Consensus       423 lg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l  458 (544)
T 3o83_A          423 LVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLI  458 (544)
T ss_dssp             EEEECTTSCEEEEEEEC-------------------
T ss_pred             EEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHH
Confidence            999999999999999999999999999999999874

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A

Probab=100.00  E-value=1.9e-71  Score=538.83  Aligned_cols=417  Identities=29%  Similarity=0.413  Sum_probs=354.9

Q ss_pred             CcccHHHHHHHHHHhcCCcceEEecC-CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCc
Q 014065            2 EGVTLIGLLNQVIDQFSSKRALSVSG-KFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARA   80 (431)
Q Consensus         2 ~~~tl~~~l~~~a~~~p~~~a~~~~~-~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~   80 (431)
                      +..|+.++|+++|+++|+++|+++.+ ++++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|+
T Consensus        14 ~~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~   93 (517)
T 3r44_A           14 KMKNIGWMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGA   93 (517)
T ss_dssp             GGGCHHHHHHHHHHHSTTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTC
T ss_pred             cccCHHHHHHHHHHhCCCCeEEEeCCcCceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHHHHHHHhCc
Confidence            36789999999999999999999754 23899999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCcccccccccccchhhhhhhccccccccccccCCCCC
Q 014065           81 TAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDP  160 (431)
Q Consensus        81 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (431)
                      +++|++|.++.+++.++++.++++++|++......................+....   .+..... ......+.....+
T Consensus        94 ~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~  169 (517)
T 3r44_A           94 VAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIGAD---SLAERLR-SAAADEPAVECGG  169 (517)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSCCTTCCEEEEHH---HHHHHHH-HCCCCCCCCCCCT
T ss_pred             EEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccCCccEEEEccCcc---cHHHHhh-ccCcCCCCCCCCC
Confidence            99999999999999999999999999999887776666554433222111111110   1110000 0111122344568


Q ss_pred             CCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCCCCCCC
Q 014065          161 SDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFS  240 (431)
Q Consensus       161 ~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~  240 (431)
                      +++++++|||||||.||+|.++|.++...+......+++.+++++++.+|++|.+++...++..+ .|+++++.+  .++
T Consensus       170 ~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G~~~v~~~--~~~  246 (517)
T 3r44_A          170 DDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISMP--QFD  246 (517)
T ss_dssp             TSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHHHHHHHHHH-HTCEEEECS--SCC
T ss_pred             CCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHh-cCeEEEEeC--CCC
Confidence            99999999999999999999999999999999899999999999999999999999987455444 999999987  789


Q ss_pred             hhhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHhCCceecccCcccccCcc
Q 014065          241 ASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLM  320 (431)
Q Consensus       241 ~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~  320 (431)
                      +..+++.++++++|++.++|+++..+.+..... ..+++++|.+++||+++++++.+.+.+. ++++++.||+||+++.+
T Consensus       247 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-~~~~~~lr~i~~gGe~l~~~~~~~~~~~-~~~~~~~YG~TE~~~~~  324 (517)
T 3r44_A          247 ATKVWSLIVEERVCIGGAVPAILNFMRQVPEFA-ELDAPDFRYFITGGAPMPEALIKIYAAK-NIEVVQGYALTESCGGG  324 (517)
T ss_dssp             HHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHH-HCCCTTCCEEEECSSCCCHHHHHHHHHT-TCEEEEEEECGGGTTCE
T ss_pred             HHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccc-cCCCCcccEEEECCCCCCHHHHHHHHhc-CCcEEEeecccccccce
Confidence            999999999999999999999999998765432 2347899999999999999999999876 99999999999998776


Q ss_pred             cCCCCCCCCCCCCCCccccc-cceEEEECCCCCcCCCCceeeEEEeCCccccccccCcchhhhcccCCceecCceEEEcC
Q 014065          321 SSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDS  399 (431)
Q Consensus       321 ~~~~~~~~~~~~~~~~G~~~-~~~~~i~d~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~  399 (431)
                      +.... .+.....+++|+|. +.+++++|++|.+++.| .|||+++||+++.||+++++.+++.|.+|||+|||+|++|+
T Consensus       325 ~~~~~-~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g-~GEl~v~g~~v~~GY~~~p~~t~~~f~~g~~~TGDl~~~~~  402 (517)
T 3r44_A          325 TLLLS-EDALRKAGSAGRATMFTDVAVRGDDGVIREHG-EGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDD  402 (517)
T ss_dssp             EEECG-GGTTTTTTCCBEECTTEEEEEECTTSCEESSE-EEEEEEEETTSCSEETTCHHHHHHTEETTEEEEEEEEEECT
T ss_pred             eecCC-ccccccCCCCCcCCCCeEEEEECCCCCCCCCC-CeEEEEeCcchhhhhCCChhhhHhhhcCCCEecceeEEEcC
Confidence            65432 22355678999999 79999999999999998 89999999999999999999999999999999999999999


Q ss_pred             CCeEEEecccccceecCCeeccccceeccc
Q 014065          400 DGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       400 ~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      ||++++.||.||+||++|++|+|.|||.+.
T Consensus       403 dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l  432 (517)
T 3r44_A          403 EGYLYIKDRLKDMIISGGENVYPAEIESVI  432 (517)
T ss_dssp             TSCEEEEECGGGCEEETTEEECHHHHHHHH
T ss_pred             CeeEEEecCCcCEEEECCEEECHHHHHHHH
Confidence            999999999999999999999999999864

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=100.00  E-value=2.6e-71  Score=540.59  Aligned_cols=418  Identities=22%  Similarity=0.317  Sum_probs=351.1

Q ss_pred             CcccHHHHHHHHHHhcCCcceEEecCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcE
Q 014065            2 EGVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARAT   81 (431)
Q Consensus         2 ~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~   81 (431)
                      .+.|+.++|+++++++|+++|+++.+ +++||+||+++++++|++|++.|+++||+|+++++|++++++++|||+++|++
T Consensus        23 ~~~tl~~~l~~~a~~~p~~~A~~~~~-~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~  101 (539)
T 1mdb_A           23 AGETFGDLLRDRAAKYGDRIAITCGN-THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGAL  101 (539)
T ss_dssp             CSCCHHHHHHHHHHHHTTSEEEEETT-EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCE
T ss_pred             cCCCHHHHHHHHHHHCCCCEEEEeCC-CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCeE
Confidence            45799999999999999999999755 79999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHHHHhcCCceEEEecCCchh-----HHHHHHHhcCcccccccccccchhhhhhhccccccccccccC
Q 014065           82 AAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNA-----AAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKL  156 (431)
Q Consensus        82 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (431)
                      ++|++|.++.+++.++++.++++++|+++....     ...............+...+..   .+..... .........
T Consensus       102 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~  177 (539)
T 1mdb_A          102 PVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAE---EFLPLED-LHTEPVKLP  177 (539)
T ss_dssp             EEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCT---TSEEGGG-CCCCCCCCC
T ss_pred             EecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCcc---chhhhhh-ccccccccC
Confidence            999999999999999999999999999876421     2222222211111111111100   0000000 000111223


Q ss_pred             CCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHHHHHH-HHHHHHhcCCEEEeCC
Q 014065          157 TNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLA-GLLSSFAAGAAVTLPA  235 (431)
Q Consensus       157 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~l~~G~~~~~~~  235 (431)
                      ...++++++++|||||||.||+|.++|.++...+......+++.+++++++.+|++|.+++.. .++.++..|+++++.+
T Consensus       178 ~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~  257 (539)
T 1mdb_A          178 EVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSP  257 (539)
T ss_dssp             CCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECS
T ss_pred             CCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEECC
Confidence            456789999999999999999999999999999888888889999999999999999999875 6889999999999987


Q ss_pred             CCCCChhhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHhCCceecccCccc
Q 014065          236 AGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTE  315 (431)
Q Consensus       236 ~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~i~~~yg~tE  315 (431)
                        .+++..+++.++++++|++.++|+++..+++..... ..+++++|.+++||+++++++.+++.+.+++++++.||+||
T Consensus       258 --~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE  334 (539)
T 1mdb_A          258 --SPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSR-RDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAE  334 (539)
T ss_dssp             --SSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHC-CCCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTT
T ss_pred             --CCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCcccc-CCCccceeEEEEcCCCCCHHHHHHHHHHhCCcEEEEEcCCC
Confidence              689999999999999999999999999998875432 34579999999999999999999999999999999999999


Q ss_pred             ccCcccCCCCCCCCCCCCCCccccc-c-ceEEEECCCCCcCCCCceeeEEEeCCccccccccCcchhhhcc-cCCceecC
Q 014065          316 ATHLMSSNPLPEDGPHKPGSVGRPV-G-QEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAF-LFGWFHTG  392 (431)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~G~~~-~-~~~~i~d~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TG  392 (431)
                      ++..+....  .......+++|+|+ + .+++|+|++|++++.|+.|||+++||+++.||+++++.+++.| .+|||+||
T Consensus       335 ~~~~~~~~~--~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TG  412 (539)
T 1mdb_A          335 GLVNYTRLD--DPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTG  412 (539)
T ss_dssp             SCEEECCTT--SCHHHHHHCCCEESSTTCEEEEECTTSCBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEE
T ss_pred             CcccccCCC--CcHHhcCCCCCcccCCCceEEEECCCCCCCcCCCcceEEeeCcccchhhcCChhhhhhhccCCCCeecC
Confidence            654333211  11122346899998 5 4899999999999999999999999999999999999999999 48999999


Q ss_pred             ceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          393 DIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       393 D~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      |+|++|+||++++.||.||+||++|++|+|.|||.+.
T Consensus       413 Dlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l  449 (539)
T 1mdb_A          413 DIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHL  449 (539)
T ss_dssp             EEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHH
T ss_pred             ceEEECCCCcEEEeccccceEEECCEEECHHHHHHHH
Confidence            9999999999999999999999999999999999864

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*

Probab=100.00  E-value=6.8e-71  Score=533.17  Aligned_cols=410  Identities=30%  Similarity=0.467  Sum_probs=350.0

Q ss_pred             HHHHHHHHhcCCcceEEe--cCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcEEEec
Q 014065            8 GLLNQVIDQFSSKRALSV--SGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPL   85 (431)
Q Consensus         8 ~~l~~~a~~~p~~~a~~~--~~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l   85 (431)
                      ++|++.++++|++.++..  .+++++||+||+++++++|++|+++|+++||+|+++++|++++++++|||+++|++++|+
T Consensus         4 ~l~~~~a~~~p~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl   83 (503)
T 4fuq_A            4 NLFARLFDKLDDPHKLAIETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPL   83 (503)
T ss_dssp             CHHHHHHSCCSCTTSEEEEETTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEEC
T ss_pred             hHHHHHHHhCCCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEec
Confidence            467888999999999985  455799999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCcccccccccccchhhhhhhccccccccccccCCCCCCCeEE
Q 014065           86 NAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVAL  165 (431)
Q Consensus        86 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (431)
                      +|.++.+++.++++.++++++|++.+..+................. .+..........   ............++++++
T Consensus        84 ~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~d~a~  159 (503)
T 4fuq_A           84 NTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLG-PDGRGSLTDAAA---GASEAFATIDRGADDLAA  159 (503)
T ss_dssp             CTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHTCEEEECC-TTSCSHHHHHHH---TSCSCCCCCCCCTTSEEE
T ss_pred             CCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcCceEEEec-CCcccccchhhh---cCCCCcCcCCCCCCCeEE
Confidence            9999999999999999999999998766555554443332111110 010001110000   111112233456799999


Q ss_pred             EEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCCCCCCChhhHH
Q 014065          166 FLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFW  245 (431)
Q Consensus       166 i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~  245 (431)
                      ++|||||||.||+|.++|.++.+.+......+++.+++++++.+|++|.+++...++.++..|+++++.+  .+++..++
T Consensus       160 i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~--~~~~~~~~  237 (503)
T 4fuq_A          160 ILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLP--KFDPDKIL  237 (503)
T ss_dssp             EEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEECS--SCCHHHHH
T ss_pred             EEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEcC--CCCHHHHH
Confidence            9999999999999999999999999999999999999999999999999998777888999999999987  78999999


Q ss_pred             HHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHhCCceecccCcccccCcccCCCC
Q 014065          246 QDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPL  325 (431)
Q Consensus       246 ~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~  325 (431)
                      +.++  ++|+++++|+++..+++..... ...++++|.+++||+++++++.+.+.+.+++++++.||+||++....... 
T Consensus       238 ~~i~--~~t~~~~~P~~~~~l~~~~~~~-~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~-  313 (503)
T 4fuq_A          238 DLMA--RATVLMGVPTFYTRLLQSPRLT-KETTGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSNPY-  313 (503)
T ss_dssp             HHHT--TCCEEEECHHHHHHHHTCTTCS-TTTTTTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETTTEECBCCCS-
T ss_pred             HHHh--hcCEEEEHHHHHHHHHhCCCcc-ccchhhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccccCcccccCC-
Confidence            9998  8999999999999998876543 34478999999999999999999999999999999999999987754332 


Q ss_pred             CCCCCCCCCCccccc-cceEEEEC-CCCCcCCCCceeeEEEeCCccccccccCcchhhhccc-CCceecCceEEEcCCCe
Q 014065          326 PEDGPHKPGSVGRPV-GQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFL-FGWFHTGDIGYFDSDGY  402 (431)
Q Consensus       326 ~~~~~~~~~~~G~~~-~~~~~i~d-~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~g~~~TGD~~~~~~~g~  402 (431)
                        +....++++|+|+ +++++|+| ++|++++.|+.|||+++||+++.||+++++.+++.|. +|||+|||+|++|+||+
T Consensus       314 --~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~  391 (503)
T 4fuq_A          314 --DGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGY  391 (503)
T ss_dssp             --SSCCCTTEEEEBCTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECTTCE
T ss_pred             --CCCCcCCccccCCCCeEEEEEECCCCCCCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcCCCc
Confidence              2455678999999 89999999 7799999999999999999999999999999999996 79999999999999999


Q ss_pred             EEEecccccceecCCeeccccceeccc
Q 014065          403 LHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       403 l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      +++.||.||+||++|++|+|.|||.+.
T Consensus       392 l~~~GR~dd~ik~~G~~v~p~eIE~~l  418 (503)
T 4fuq_A          392 VHILGRGKDLVITGGFNVYPKEIESEI  418 (503)
T ss_dssp             EEECCSSTTCEEETTEEECHHHHHHHH
T ss_pred             EEEEecCCCEEEECCEEECHHHHHHHH
Confidence            999999999999999999999999863

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A

Probab=100.00  E-value=7.4e-71  Score=539.01  Aligned_cols=421  Identities=24%  Similarity=0.381  Sum_probs=330.5

Q ss_pred             CcccHHHHHHHHHHhcCCcceEE---ec-CCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHH
Q 014065            2 EGVTLIGLLNQVIDQFSSKRALS---VS-GKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIR   77 (431)
Q Consensus         2 ~~~tl~~~l~~~a~~~p~~~a~~---~~-~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~   77 (431)
                      .+.|+.++|.++++++|+++|++   +. +++++||+||.++++++|++|++.|+++||+|+++++|++++++++|||++
T Consensus        18 ~~~tl~~~l~~~a~~~p~~~a~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~   97 (550)
T 3rix_A           18 EDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALF   97 (550)
T ss_dssp             CCSCHHHHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHhCCCCceEEEeeecCCCcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHHHHHHHHHH
Confidence            46799999999999999999976   32 357999999999999999999999999999999999999999999999999


Q ss_pred             hCcEEEecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCcccccccccccch---hh---hh-hhccc--cc
Q 014065           78 ARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADS---EL---TL-SLAHS--ES  148 (431)
Q Consensus        78 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~-~~~~~--~~  148 (431)
                      +|++++|++|.++.+++.++++.++++++|++.+..+.+.............+.......   ..   .+ .....  ..
T Consensus        98 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (550)
T 3rix_A           98 IGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFN  177 (550)
T ss_dssp             HTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCBTTBCBHHHHHHHHCCTTCC
T ss_pred             cCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCCCcceEEEEcCCccccCcccHHHHhhcccccccc
Confidence            999999999999999999999999999999999887777766655443222222211100   00   00 00000  00


Q ss_pred             cccccccCCCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHH---hcCCCCCeEEEecChhhHHHHHHHHHHHH
Q 014065          149 DTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSV---YKLTESDSTVIVLPLFHVHGMLAGLLSSF  225 (431)
Q Consensus       149 ~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~~~~~~~~~~l  225 (431)
                      .....+.....++++++++|||||||.||+|.++|.++...+......   .++.+++++++.+|++|.+++.. .+.++
T Consensus       178 ~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-~~~~l  256 (550)
T 3rix_A          178 EYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFT-TLGYL  256 (550)
T ss_dssp             TTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHH-HHHHH
T ss_pred             ccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHH-HHHHH
Confidence            001111222345789999999999999999999999998887766554   46788999999999999999876 78889


Q ss_pred             hcCCEEEeCCCCCCChhhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHhCC
Q 014065          226 AAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGA  305 (431)
Q Consensus       226 ~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~  305 (431)
                      ..|+++++.+  .+++..+++.++++++|+++++|+++..+++..... ..+++++|.+++||+++++++.+++.+.++.
T Consensus       257 ~~G~~~~~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~  333 (550)
T 3rix_A          257 ICGFRVVLMY--RFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLID-KYDLSNLHEIASGGAPLSKEVGEAVAKRFHL  333 (550)
T ss_dssp             HHTCEEEECS--SCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGG-GSCCTTCCEEEECSSCCCHHHHHHHHHHTTC
T ss_pred             HcCCEEEEeC--CCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcccc-ccCcccccEEEEecCCCCHHHHHHHHHHcCC
Confidence            9999999987  789999999999999999999999999998876543 3457899999999999999999999999986


Q ss_pred             c-eecccCcccccCcccCCCCCCCCCCCCCCccccc-cceEEEEC-CCCCcCCCCceeeEEEeCCccccccccCcchhhh
Q 014065          306 P-VLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKS  382 (431)
Q Consensus       306 ~-i~~~yg~tE~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d-~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~  382 (431)
                      . +++.||+||+++.++..+.   .....+++|+|+ +++++|+| ++|++++.|+.|||+++||+++.||+++++.+++
T Consensus       334 ~~v~~~YG~TE~~~~~~~~~~---~~~~~~~vG~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~  410 (550)
T 3rix_A          334 PGIRQGYGLTETTSAILITPE---GDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNA  410 (550)
T ss_dssp             SCCEEEEECGGGSSEEEECCT---TCCCTTEEEEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHH
T ss_pred             CccccccCcCccccceecCCC---CCCCCCCcccccCCcEEEEEeCCCCcCCCCCCCeEEEEeCCCcchhhcCChhhhhh
Confidence            5 8999999999988776653   345678999999 89999999 5699999999999999999999999999999999


Q ss_pred             cc-cCCceecCceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          383 AF-LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       383 ~~-~~g~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      .| .+|||+|||+|++|+||++++.||.||+||++|++|+|.|||.+.
T Consensus       411 ~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l  458 (550)
T 3rix_A          411 LIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESIL  458 (550)
T ss_dssp             HBCTTSCEEEEEEEEECTTCCEEEC-----------------------
T ss_pred             hcCCCCCeecCcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHH
Confidence            88 679999999999999999999999999999999999999999874

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}

Probab=100.00  E-value=5e-71  Score=540.14  Aligned_cols=419  Identities=26%  Similarity=0.406  Sum_probs=347.6

Q ss_pred             CcccHHHHHHHHHHhcCCcceEEecCC-------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHH
Q 014065            2 EGVTLIGLLNQVIDQFSSKRALSVSGK-------FDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLA   74 (431)
Q Consensus         2 ~~~tl~~~l~~~a~~~p~~~a~~~~~~-------~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA   74 (431)
                      ...|+.++|+++|+++|+++|+++.++       +++||+||.++++++|++|++.|+++||+|+++++|++++++++||
T Consensus        17 ~~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA   96 (549)
T 3g7s_A           17 PKISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMTIYA   96 (549)
T ss_dssp             CCCCTTHHHHHHHHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHhCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            467899999999999999999997652       6899999999999999999999999999999999999999999999


Q ss_pred             HHHhCcEEEecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCcccccccccccchhhhhhhccccccccccc
Q 014065           75 VIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAIS  154 (431)
Q Consensus        75 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (431)
                      |+++|++++|++|.++.+++.++++.++++++|++....+................ ......  .+.......... ..
T Consensus        97 ~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~-~~  172 (549)
T 3g7s_A           97 LWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKTGVERVFV-VGGEVN--SLSEVMDSGSED-FE  172 (549)
T ss_dssp             HHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSCCCEEEE-ETCSSS--CHHHHHHHSCSC-CC
T ss_pred             HHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhCCCcEEEE-eCCCCc--CHHHHHhcCccc-cc
Confidence            99999999999999999999999999999999999987777666655444322211 111100  010000000011 11


Q ss_pred             cCCCC-CCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEe
Q 014065          155 KLTND-PSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTL  233 (431)
Q Consensus       155 ~~~~~-~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~  233 (431)
                      ..... ++++++++|||||||.||+|.++|.++...+......+++.++++++..+|++|.+++.. ++.++..|+++++
T Consensus       173 ~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~  251 (549)
T 3g7s_A          173 NVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEFGL-VNLMVTVGNEYVV  251 (549)
T ss_dssp             CCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSCTTSHHHHHH-HTTHHHHCCEEEE
T ss_pred             cccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCcHHHHHHHHH-HHHHHhcCceEEE
Confidence            12223 389999999999999999999999999999999889999999999999999999999887 8889999999999


Q ss_pred             CCCCCCChhhHHHHHHHhcceeeecchHHHHHHHhcccCCC-CCCCCCccEEEeccCCCcHHHHHHHHHH----hC---C
Q 014065          234 PAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKP-EPVYPKLRFIRSCSASLAPVILSRLEEA----FG---A  305 (431)
Q Consensus       234 ~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~-~~~~~~l~~i~~~g~~~~~~~~~~~~~~----~~---~  305 (431)
                      .+  .+++..+++.|+++++|+++++|+++..+++...... ..+++++|.+++||+++++++.+++.+.    ++   +
T Consensus       252 ~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~  329 (549)
T 3g7s_A          252 MG--MFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRL  329 (549)
T ss_dssp             ES--SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTC
T ss_pred             cC--CCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccc
Confidence            87  7899999999999999999999999999988754432 2457899999999999999999999988    56   8


Q ss_pred             ceecccCcccccCcccCCCCCCCCCCCCCCccccc-cceEEEEC-CCCCcCCCCceeeEEEeCCccccccccCcchhhhc
Q 014065          306 PVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSA  383 (431)
Q Consensus       306 ~i~~~yg~tE~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d-~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~  383 (431)
                      ++++.||+||++.+++....  .......++|+|+ +++++|+| ++|++++.|+.|||+|+||+++.||+++++.+++.
T Consensus       330 ~~~~~YG~TE~~~~~~~~~~--~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~  407 (549)
T 3g7s_A          330 RHNQIWGMTEACPMVTTNPP--LRLDKSTTQGVPMSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQEC  407 (549)
T ss_dssp             EEEEEEECGGGSSEEEECCG--GGGGGTTSCCEECTTCEEEEECSSSCCEECTTCCEEEEEESTTSCSEETTCTTGGGTS
T ss_pred             cccceEeccccchhhhcCCc--cccCcCCCccccCCCCEEEEEeCCCCcCCCCCCceEEEEECcchhhhhCCChhhhhhh
Confidence            89999999999988776543  2235667899999 89999999 88999999999999999999999999999999998


Q ss_pred             c---cCC--ceecCceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          384 F---LFG--WFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       384 ~---~~g--~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      |   .+|  ||+|||+|++|+||++++.||.||+||++|++|+|.|||.+.
T Consensus       408 f~~~~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l  458 (549)
T 3g7s_A          408 WWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALL  458 (549)
T ss_dssp             EEECTTCCEEEEEEEEEEECTTSCEEEEEEC------------CHHHHHHH
T ss_pred             hhccCCCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHHHHHHH
Confidence            8   567  999999999999999999999999999999999999999864

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*

Probab=100.00  E-value=9.9e-71  Score=536.74  Aligned_cols=419  Identities=26%  Similarity=0.346  Sum_probs=348.6

Q ss_pred             cccHHHHHHHHHHhcCCcceEEe---cCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhC
Q 014065            3 GVTLIGLLNQVIDQFSSKRALSV---SGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRAR   79 (431)
Q Consensus         3 ~~tl~~~l~~~a~~~p~~~a~~~---~~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G   79 (431)
                      ..|+.++|+++++++|+++|+++   .+++++||+||+++++++|++|+++|+++||+|+++++|++++++++|||+++|
T Consensus        17 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G   96 (541)
T 1v25_A           17 ELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMG   96 (541)
T ss_dssp             CCCTHHHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHhCCCceEEEEecCCCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcC
Confidence            35899999999999999999985   244799999999999999999999999999999999999999999999999999


Q ss_pred             cEEEecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCcccccccccccc--hhhhhhhccccccccccccCC
Q 014065           80 ATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDAD--SELTLSLAHSESDTNAISKLT  157 (431)
Q Consensus        80 ~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  157 (431)
                      ++++|++|.++.+++.++++.++++++|++.+..+...............+.+....  ....+.......    .....
T Consensus        97 av~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  172 (541)
T 1v25_A           97 AVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGEE----ADPVR  172 (541)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCCTTCEEHHHHCCSC----CCCCC
T ss_pred             cEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCCCccEEEEecCCCCcccccHHHHhhcc----CCccc
Confidence            999999999999999999999999999999887666555443322111111111110  000111100000    01133


Q ss_pred             CCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHH--HHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCC
Q 014065          158 NDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSN--IKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPA  235 (431)
Q Consensus       158 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~--~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~  235 (431)
                      ..++++++++|||||||.||+|.++|.+++.....  ....+++.++|++++.+|++|.+++.. ++.++..|+++++.+
T Consensus       173 ~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~-~~~~l~~G~~~v~~~  251 (541)
T 1v25_A          173 VPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCL-PYAATLVGAKQVLPG  251 (541)
T ss_dssp             CCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTH-HHHHHHHTCEEEECT
T ss_pred             CCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHHHH-HHHHHhcCceEEeeC
Confidence            45789999999999999999999999999877654  335567889999999999999999865 778899999999976


Q ss_pred             CCCCChhhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHhCCceecccCccc
Q 014065          236 AGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTE  315 (431)
Q Consensus       236 ~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~i~~~yg~tE  315 (431)
                      . .+++..+++.++++++|+++++|+++..+++..... ..+++++|.+++||+++++++.+.+ +.+++++++.||+||
T Consensus       252 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-~~~l~~lr~i~~gG~~l~~~~~~~~-~~~g~~~~~~YG~TE  328 (541)
T 1v25_A          252 P-RLDPASLVELFDGEGVTFTAGVPTVWLALADYLEST-GHRLKTLRRLVVGGSAAPRSLIARF-ERMGVEVRQGYGLTE  328 (541)
T ss_dssp             T-CCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHH-TCCCSSCCEEEECSSCCCHHHHHHH-HHTTCEEEEEEECGG
T ss_pred             C-CCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhcc-CCcchhccEEEECCCCCCHHHHHHH-HHhCCceeecccccc
Confidence            3 479999999999999999999999999998765432 2347899999999999999999999 678999999999999


Q ss_pred             ccCcccCCCCCCCC--------CCCCCCccccc-cceEEEECCCCCcCCC--CceeeEEEeCCccccccccCcchhhhcc
Q 014065          316 ATHLMSSNPLPEDG--------PHKPGSVGRPV-GQEIAILDEIGVPQEG--GAKGEVCIRGPNVTKGYKNNPEANKSAF  384 (431)
Q Consensus       316 ~~~~~~~~~~~~~~--------~~~~~~~G~~~-~~~~~i~d~~~~~~~~--~~~Gel~v~~~~~~~gy~~~~~~~~~~~  384 (431)
                      ++++++........        ....+++|+|+ +++++|+|++|++++.  ++.|||+++||+++.||+++++.+++.|
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f  408 (541)
T 1v25_A          329 TSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSAL  408 (541)
T ss_dssp             GSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEECTTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTB
T ss_pred             cccceecccccccccccCccccccccCCCCCcCCCcEEEEECCCCCCCCCCCCcceEEEEeCcchhccccCChhhhhhhc
Confidence            99877665432100        02357899999 8999999999999984  3689999999999999999999999999


Q ss_pred             c-CCceecCceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          385 L-FGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       385 ~-~g~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      . +|||+|||+|++|+||++++.||.||+||++|++|+|.|||.+.
T Consensus       409 ~~~g~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l  454 (541)
T 1v25_A          409 TPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENAL  454 (541)
T ss_dssp             CTTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC-
T ss_pred             cCCCCeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHH
Confidence            6 89999999999999999999999999999999999999999874

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0

Probab=100.00  E-value=3.7e-70  Score=529.67  Aligned_cols=412  Identities=28%  Similarity=0.419  Sum_probs=328.0

Q ss_pred             CcccHHHHHHHHHHhcCCcceEEecCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcE
Q 014065            2 EGVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARAT   81 (431)
Q Consensus         2 ~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~   81 (431)
                      .++|+.++|+++|+++|+++|+++.+ +++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|++
T Consensus         4 ~~~tl~~~l~~~a~~~pd~~Al~~~~-~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~   82 (509)
T 3ivr_A            4 HDFTLADVYRRNAALFPDRTAFMVDG-VRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAI   82 (509)
T ss_dssp             TCCCHHHHHHHHHHHSTTSEEEEETT-EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCE
T ss_pred             CcCCHHHHHHHHHHHCCCceEEEECC-cEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCCE
Confidence            57899999999999999999999755 79999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCcccccccccccchhhhhhhccccccccccccCCCCCC
Q 014065           82 AAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPS  161 (431)
Q Consensus        82 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (431)
                      ++|++|.++.+++.++++.++++++|++.+..................+...+..  ..+..................++
T Consensus        83 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  160 (509)
T 3ivr_A           83 LLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGS--GPFAPFKDLASDTPFSAPEFGAA  160 (509)
T ss_dssp             EEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCSSCCEEEESSCCC--SSCEEGGGTCCCSCCCCCCCCTT
T ss_pred             EEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccCCceEEEEcCCCC--cChhhHhhccCCCCCCcCCCCcc
Confidence            9999999999999999999999999999987766444433322211111111110  00000000011112223456789


Q ss_pred             CeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCCCCCCCh
Q 014065          162 DVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSA  241 (431)
Q Consensus       162 ~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~  241 (431)
                      ++++++|||||||.||+|.++|.++...+......+++.+++++++.+|++|.+++...+...+. |++.++..  .+++
T Consensus       161 d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~-~g~~~~~~--~~~~  237 (509)
T 3ivr_A          161 DGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLTLQQA-GGASVIAA--KFDP  237 (509)
T ss_dssp             SEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHH-TCEEEECS--SCCH
T ss_pred             ccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHHHHHHHHh-CCcEEEec--ccCH
Confidence            99999999999999999999999999999998999999999999999999999999874444444 44444444  6799


Q ss_pred             hhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHh-CCceecccCcccccCcc
Q 014065          242 STFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVLEAYAMTEATHLM  320 (431)
Q Consensus       242 ~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~-~~~i~~~yg~tE~~~~~  320 (431)
                      ..+++.++++++|++..+|+++..+++...   ..+++++|.+..+|++   +..+.+.+.+ ++++++.||+||+++++
T Consensus       238 ~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~---~~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~~  311 (509)
T 3ivr_A          238 AQAARDIEAHKVTVMAEFAPMLGNILDQAA---PAQLASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLS  311 (509)
T ss_dssp             HHHHHHHHHHTCCEEEEETTHHHHHHHHCC---GGGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEEE
T ss_pred             HHHHHHHHHHCCcEEEecHHHHHHHHhccc---ccchhhhheecccCCh---HHHHHHHHhcCCCeEEcccCcccccccc
Confidence            999999999999999999999999988762   3347899999999987   8888888888 89999999999999876


Q ss_pred             cCCCCCCCCCCCCCCccccc-cceEEEECCCCCcCCCCceeeEEEeCCccccccccCcchhhhcccCCceecCceEEEcC
Q 014065          321 SSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDS  399 (431)
Q Consensus       321 ~~~~~~~~~~~~~~~~G~~~-~~~~~i~d~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~  399 (431)
                      +..+..    ....++|+|+ +++++|+|++|++++.|+.|||+++|++++.||+++++.+++.|.+|||+|||+|++|+
T Consensus       312 ~~~~~~----~~~~~~G~p~~~~~~~i~d~~~~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~g~~~TGDl~~~~~  387 (509)
T 3ivr_A          312 TFAPYR----DRPKSAGRPLFWRTVAVVDAEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFDA  387 (509)
T ss_dssp             EEEEGG----GSTTSCCEECTTCEEEEECTTSCBCCTTCCEEEEEESTTSCCEETTCHHHHHHHTGGGSEEEEEEEEECT
T ss_pred             ccCccc----cCCCcccccCCCcEEEEECCCCCCCCCCCceEEEEecCCccccccCCHHHhHHHhhcCCcccccEEEECC
Confidence            665431    2234599999 89999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEeccc--ccceecCCeeccccceeccc
Q 014065          400 DGYLHLVGRI--KELINRGGNLHESISLFLAK  429 (431)
Q Consensus       400 ~g~l~~~gR~--~d~i~~~G~~i~~~~iE~a~  429 (431)
                      ||++++.||.  +|+||++|++|+|.|||.+.
T Consensus       388 dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l  419 (509)
T 3ivr_A          388 DGYLFYAGRAPEKELIKTGGENVYPAEVEGAL  419 (509)
T ss_dssp             TSCEEEEEEC----------------------
T ss_pred             CceEEEeCCCCcceeEEECCEEECHHHHHHHH
Confidence            9999999999  99999999999999999874

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*

Probab=100.00  E-value=1.1e-69  Score=525.32  Aligned_cols=409  Identities=22%  Similarity=0.283  Sum_probs=342.9

Q ss_pred             ccHHHHHHHHHHhcCCcceEEecC-CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcEE
Q 014065            4 VTLIGLLNQVIDQFSSKRALSVSG-KFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATA   82 (431)
Q Consensus         4 ~tl~~~l~~~a~~~p~~~a~~~~~-~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~   82 (431)
                      +|+.++|+++|+++|+++|+++.+ ++++||+||+++++++|++|++.|+++||+|+++++|++++++++|||+++|+++
T Consensus         2 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~   81 (504)
T 1t5h_X            2 QTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVP   81 (504)
T ss_dssp             CCHHHHHHHHHHHCTTSEEEEETTTTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEE
T ss_pred             CcHHHHHHHHHHhCCCceEEEEcCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCcEE
Confidence            579999999999999999999752 4799999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHhcCCceEEEe--cCCchhHHHHHHHhcCcccccccccccchhhhhhhccccccccccccCCCCC
Q 014065           83 APLNAAYTPDEFEFYLSDSESKLLLT--PAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDP  160 (431)
Q Consensus        83 v~l~~~~~~~~l~~~l~~~~~~~ii~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (431)
                      +|++|.++.+++.++++.++++++++  +....+...   ..... ...+.+.+.     ...................+
T Consensus        82 vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~---~~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~  152 (504)
T 1t5h_X           82 ALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIF---QSGSG-ARIIFLGDL-----VRDGEPYSYGPPIEDPQREP  152 (504)
T ss_dssp             EEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHH---HHCCC-CEEEEGGGT-----EETTEECCCSCCCCCCCCCT
T ss_pred             EecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhh---hcccc-ceeEEecch-----hhcCcccccCCccCCCCCCC
Confidence            99999999999999999999999999  665433321   11110 001101000     00000000001111134567


Q ss_pred             CCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcC--CCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCCCCC
Q 014065          161 SDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKL--TESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGR  238 (431)
Q Consensus       161 ~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~--~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~  238 (431)
                      +++++++|||||||.||+|.++|+++.+.+......+++  .+++++++.+|++|.+++...++.++..|+++++.+  .
T Consensus       153 ~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~--~  230 (504)
T 1t5h_X          153 AQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVE--E  230 (504)
T ss_dssp             TSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEECS--S
T ss_pred             CCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEEeCC--C
Confidence            899999999999999999999999999888888777888  889999999999999998766899999999999987  6


Q ss_pred             CChhhHHHHHHHhcceeeecchHHHHHHHhcccC-CCCCCCCCccEEEeccCCCcHHHHHHHHHHhCCceecccCccccc
Q 014065          239 FSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVA-KPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEAT  317 (431)
Q Consensus       239 ~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~-~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~i~~~yg~tE~~  317 (431)
                      +++..+++.|+++++|+++++|++++.+++.... ....+++++|.+++||+++++++.+.+.+.+++.+++.||+||++
T Consensus       231 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~  310 (504)
T 1t5h_X          231 FRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAM  310 (504)
T ss_dssp             CCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCCHHHHHHHHHHCCSEEEEEEEETTTE
T ss_pred             CCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCCcCCHHHHHHHHHhcCcceeeeecccccc
Confidence            8999999999999999999999999999887632 233457999999999999999999999999999999999999984


Q ss_pred             CcccCCCCCCCCCCCCCCccccc-cceEEEECCCC---CcCCCCceeeEEEe-CCccccccccCcchhhhcccCCceecC
Q 014065          318 HLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIG---VPQEGGAKGEVCIR-GPNVTKGYKNNPEANKSAFLFGWFHTG  392 (431)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d~~~---~~~~~~~~Gel~v~-~~~~~~gy~~~~~~~~~~~~~g~~~TG  392 (431)
                      .. ....     ....+++|+|. +.+++++|+++   ++++.|+.|||+++ |+.++.||+++++.+++.|.+|||+||
T Consensus       311 ~~-~~~~-----~~~~~~~g~p~~~~~~~i~~~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f~~g~~~TG  384 (504)
T 1t5h_X          311 NS-LYMR-----QPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTS  384 (504)
T ss_dssp             EE-EEEE-----SCSSSSEEBCCTTCCEEEECTTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEE
T ss_pred             cc-cccc-----CCCCCccccCCCCCceeEEeccCCCCCcCCCCCcceEEEeCCceeeceecCCchhhhhhhcCCccccC
Confidence            32 2211     24567899998 79999999887   89999999999999 899999999999999999999999999


Q ss_pred             ceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          393 DIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       393 D~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      |+|++|+||++++.||.||+||++|++|+|.|||.+.
T Consensus       385 Dlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l  421 (504)
T 1t5h_X          385 DVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVL  421 (504)
T ss_dssp             EEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHH
T ss_pred             cEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHH
Confidence            9999999999999999999999999999999999864

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=100.00  E-value=1.2e-69  Score=529.69  Aligned_cols=418  Identities=25%  Similarity=0.354  Sum_probs=350.4

Q ss_pred             ccHHH-HHHHHHHhcCCcceEEec-CCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcE
Q 014065            4 VTLIG-LLNQVIDQFSSKRALSVS-GKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARAT   81 (431)
Q Consensus         4 ~tl~~-~l~~~a~~~p~~~a~~~~-~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~   81 (431)
                      .|+.+ ++.++++++ +++|+++. +++++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|++
T Consensus        25 ~~l~~~~l~~~~~~~-~~~A~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~la~~~~Gav  103 (548)
T 2d1s_A           25 AGTQLRKYMERYAKL-GAIAFTNAVTGVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVG  103 (548)
T ss_dssp             HHHHHHHHHHHHHHH-TCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTCE
T ss_pred             CcHHHHHHHhhhccc-CCceEEEcCCCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhhCCE
Confidence            47889 899999999 99999974 4579999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCcccccccccccch---hhhhhhccccccccccccCCC
Q 014065           82 AAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADS---ELTLSLAHSESDTNAISKLTN  158 (431)
Q Consensus        82 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  158 (431)
                      ++|++|.++.+++.++++.++++++|++....+.+.............+.+.....   ...+............+....
T Consensus       104 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (548)
T 2d1s_A          104 VAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRNTPPGFQASSF  183 (548)
T ss_dssp             EEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHSTTCCEEEETTCSSCBTTBCBHHHHHHHTSCTTCCGGGC
T ss_pred             EeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCCCCCEEEEeCCcccccccccHHHHHhcCccccCCcccc
Confidence            99999999999999999999999999999877666554433221111111111100   000000000000000001111


Q ss_pred             ------CCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHH---hcCCCCCeEEEecChhhHHHHHHHHHHHHhcCC
Q 014065          159 ------DPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSV---YKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGA  229 (431)
Q Consensus       159 ------~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~  229 (431)
                            .++++++++|||||||.||+|.++|+++...+......   +++.+++++++.+|++|.+++...++.++ .|+
T Consensus       184 ~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~  262 (548)
T 2d1s_A          184 KTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGF  262 (548)
T ss_dssp             CCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTC
T ss_pred             cccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCc
Confidence                  23899999999999999999999999999888776665   67889999999999999999987677777 999


Q ss_pred             EEEeCCCCCCChhhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHh-CCcee
Q 014065          230 AVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVL  308 (431)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~-~~~i~  308 (431)
                      ++++.+  .+++..+++.|+++++|+++++|++++.+.+..... ..+++++|.+++||+++++++.+++.+.+ +++++
T Consensus       263 ~~v~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~  339 (548)
T 2d1s_A          263 RVVMLT--KFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLN-KYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVR  339 (548)
T ss_dssp             EEEECC--CCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGG-GSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCE
T ss_pred             EEEEcC--CCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccc-cccccceeEEEEcCccCCHHHHHHHHHHcCCCcee
Confidence            999987  689999999999999999999999999998765432 23578999999999999999999999999 68899


Q ss_pred             cccCcccccCcccCCCCCCCCCCCCCCccccc-cceEEEEC-CCCCcCCCCceeeEEEeCCccccccccCcchhhhcc-c
Q 014065          309 EAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAF-L  385 (431)
Q Consensus       309 ~~yg~tE~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d-~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~  385 (431)
                      +.||+||++..++..+.   .....+++|+|+ +++++|+| ++|++++.|+.|||+++|++++.||+++++.+++.| .
T Consensus       340 ~~YG~TE~~~~~~~~~~---~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~  416 (548)
T 2d1s_A          340 QGYGLTETTSAIIITPE---GDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDE  416 (548)
T ss_dssp             EEEECGGGSSEEEECCT---TCCCTTCCBEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCT
T ss_pred             eccccccccceeeecCc---ccCCCCCCCccCCCceEEEEeCCcCccCCCCCCeEEEECCHHHhhhhcCChHHhhhcccC
Confidence            99999999987766432   235678999999 79999999 789999999999999999999999999999999988 5


Q ss_pred             CCceecCceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          386 FGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       386 ~g~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      +|||+|||+|++|+||++++.||.||+||++|++|+|.|||.+.
T Consensus       417 ~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l  460 (548)
T 2d1s_A          417 EGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVL  460 (548)
T ss_dssp             TSCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHH
T ss_pred             CcEEEccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHH
Confidence            79999999999999999999999999999999999999999863

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*

Probab=100.00  E-value=5.6e-70  Score=537.12  Aligned_cols=401  Identities=16%  Similarity=0.212  Sum_probs=344.0

Q ss_pred             cccHHHHHHHHHHhcCCcceEEecCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcEE
Q 014065            3 GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATA   82 (431)
Q Consensus         3 ~~tl~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~   82 (431)
                      ..|+.++|+++|+++|+++|+++.+ +++||+||+++++++|++|++.|+++||+|+++++|++++++++|||+++|+++
T Consensus        26 ~~tl~~~~~~~a~~~Pd~~Av~~~~-~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lailkaGa~~  104 (620)
T 4dg8_A           26 HPTVVARFSEMAALHPHREAIRDRF-GSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILLSGHHY  104 (620)
T ss_dssp             SCCHHHHHHHHHHHCTTSEEEEETT-EEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHHHHTTCEE
T ss_pred             CCCHHHHHHHHHHhCCCCeEEEcCC-CcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEE
Confidence            4689999999999999999999755 699999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCcccccccccccchhhhhhhccccccccccccCCCCCCC
Q 014065           83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSD  162 (431)
Q Consensus        83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (431)
                      +|++|.++.+++.++++.+++++++++........      ......           ....  .............+++
T Consensus       105 vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~~------~~~~~~-----------~~~~--~~~~~~~~~~~~~~~d  165 (620)
T 4dg8_A          105 LYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPAN------GLPCVP-----------VRHL--PAAPASVARPCFAADQ  165 (620)
T ss_dssp             EECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCCT------TSCEEE-----------GGGC--CCCCCCSSCCCCCTTS
T ss_pred             EeeCccChHHHHHHHHHhCCCcEEEecCccccccc------CCceee-----------eccC--CcCCccccCCCCCCCC
Confidence            99999999999999999999999997654321100      000000           0000  0111111223346799


Q ss_pred             eEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCCCCCCChh
Q 014065          163 VALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSAS  242 (431)
Q Consensus       163 ~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~  242 (431)
                      +++++|||||||.||+|.++|.++.+.+.. ...+++.++++++...|++|..+++. ++.++..|+++++.+...+++.
T Consensus       166 ~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~~v~~~~~~~~~~  243 (620)
T 4dg8_A          166 IAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAATLE-IWGALLNGGCCVLNDLGPLDPG  243 (620)
T ss_dssp             EEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHHHH-HHHHHTTTCEEEECCSSSCCHH
T ss_pred             eEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHHHH-HHHHHhcCCEEEeCccccCCHH
Confidence            999999999999999999999999876655 55678899999999999999999877 8999999999999765578999


Q ss_pred             hHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHh-CCceecccCcccccCccc
Q 014065          243 TFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVLEAYAMTEATHLMS  321 (431)
Q Consensus       243 ~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~-~~~i~~~yg~tE~~~~~~  321 (431)
                      .+++.++++++|++.++|++++.+++...    ..++++|.+++||++++++..+.+.+.+ +++++|.||+||++.+++
T Consensus       244 ~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~----~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~  319 (620)
T 4dg8_A          244 VLRQLIGERGADSAWLTASLFNTLVDLDP----DCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTC  319 (620)
T ss_dssp             HHHHHHHTTCCCEEEEEHHHHHHHHHHCG----GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSE
T ss_pred             HHHHHHHHhCCcEEEccHHHHHHHHhcCh----hhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheE
Confidence            99999999999999999999999987532    2478999999999999999998888776 899999999999998766


Q ss_pred             CCCCCC-CCCCCCCCccccc-cceEEEECCCCCc-CCCCceeeEEEeCCccccccccCcchhhhcccC--------Ccee
Q 014065          322 SNPLPE-DGPHKPGSVGRPV-GQEIAILDEIGVP-QEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF--------GWFH  390 (431)
Q Consensus       322 ~~~~~~-~~~~~~~~~G~~~-~~~~~i~d~~~~~-~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~--------g~~~  390 (431)
                      ...... .......++|+|+ +++++|+|+++++ ++.|+.|||+++|+++++||+++++.+++.|.+        +||+
T Consensus       320 ~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yr  399 (620)
T 4dg8_A          320 CHVVTDDDLEEDDIPIGKAIAGTAVLLLDEHGQEIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYR  399 (620)
T ss_dssp             EEECCTGGGGSSSCCCBEECTTEEEEEECTTSCBCCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEE
T ss_pred             EEeccccccCCCCCCceecccCcEEEEECccCCCCCCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEe
Confidence            543222 2245567899999 8999999999887 789999999999999999999999999999864        7999


Q ss_pred             cCceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          391 TGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       391 TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      |||+|++++||+++|+||.||+||++|++|+|.|||.+.
T Consensus       400 TGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l  438 (620)
T 4dg8_A          400 TGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRF  438 (620)
T ss_dssp             EEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHH
T ss_pred             CCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHH
Confidence            999999999999999999999999999999999999864

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*

Probab=100.00  E-value=1.6e-69  Score=530.54  Aligned_cols=417  Identities=21%  Similarity=0.282  Sum_probs=350.0

Q ss_pred             cHHHHHHHHHHh-----cCCcceEEecC----CCcccHHHHHHHHHHHHHHHHHc-CCCCCCEEEEECCCcHHHHHHHHH
Q 014065            5 TLIGLLNQVIDQ-----FSSKRALSVSG----KFDLTYSRIHELVERAASRLVAA-GINAGDVVALTFPNTVEFVIMFLA   74 (431)
Q Consensus         5 tl~~~l~~~a~~-----~p~~~a~~~~~----~~~~Ty~el~~~~~~~a~~L~~~-gl~~gd~V~i~~~n~~~~~~~~lA   74 (431)
                      ++.++|++++++     +|+++|+++.+    ++++||+||.++++++|++|++. |+++||+|+++++|++++++++||
T Consensus        39 ~~~~~l~~~a~~~~a~~~p~~~al~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e~~~~~lA  118 (570)
T 3c5e_A           39 FASDVLDHWADMEKAGKRPPSPALWWVNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILG  118 (570)
T ss_dssp             HHHHTHHHHHHHHHTTSSCCCEEEEEECSSSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHHHHHHHHH
T ss_pred             HHHHHHHHHHhhccccCCCCceEEEEEcCCCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHHHHHHHHH
Confidence            467899999999     99999999732    36899999999999999999999 999999999999999999999999


Q ss_pred             HHHhCcEEEecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCcccccccccccc--hhhhhhhccccccccc
Q 014065           75 VIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDAD--SELTLSLAHSESDTNA  152 (431)
Q Consensus        75 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  152 (431)
                      |+++|++++|+++.++.+++.++++.++++++|++.+..+.+.............+.+.+..  ....+....... ...
T Consensus       119 ~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  197 (570)
T 3c5e_A          119 CIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSCDGWLNFKKLLNEA-STT  197 (570)
T ss_dssp             HHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCTTCCEEEEESSSCCTTSEEHHHHHHHS-CSC
T ss_pred             HHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCCceeEEEEecccCccccccHHHHhhcc-ccc
Confidence            99999999999999999999999999999999999887766655443322111111111100  000011000000 011


Q ss_pred             cccCCCCCCCeEEEEeccCCCCCCCeeeechHHHHH--HHHHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCE
Q 014065          153 ISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAA--SVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAA  230 (431)
Q Consensus       153 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~--~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~  230 (431)
                      .......++++++++|||||||.||+|.++|. ++.  ..... ..+++.++|++++.+|++|.+++...++.++..|++
T Consensus       198 ~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~  275 (570)
T 3c5e_A          198 HHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWTGLQASDIMWTISDTGWILNILCSLMEPWALGAC  275 (570)
T ss_dssp             CCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCE
T ss_pred             ccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCce
Confidence            11234567899999999999999999999999 554  33333 667889999999999999999998778999999999


Q ss_pred             EEeCCCCCCChhhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHhCCceecc
Q 014065          231 VTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEA  310 (431)
Q Consensus       231 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~i~~~  310 (431)
                      +++.+...+++..+++.|+++++|+++++|++++.+++...  ...+++++|.+++||+++++++.+.+.+.+++++++.
T Consensus       276 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~  353 (570)
T 3c5e_A          276 TFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQDL--SSYKFPHLQNCVTVGESLLPETLENWRAQTGLDIRES  353 (570)
T ss_dssp             EEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSCT--TTCCCTTCCEEEEESSCCCHHHHHHHHHHHSCCCEEE
T ss_pred             EEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhccc--cccccccceEEEEcCCcCCHHHHHHHHHHhCCchhhc
Confidence            99876546899999999999999999999999999987632  2335789999999999999999999999999999999


Q ss_pred             cCcccccCcccCCCCCCCCCCCCCCccccc-cceEEEECCCCCcCCCCceeeEEEe-----CCccccccccCcchhhhcc
Q 014065          311 YAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIR-----GPNVTKGYKNNPEANKSAF  384 (431)
Q Consensus       311 yg~tE~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d~~~~~~~~~~~Gel~v~-----~~~~~~gy~~~~~~~~~~~  384 (431)
                      ||+||++..++....   ....++++|+|+ +++++|+|++|++++.|+.|||+++     |++++.||+++++.+.+.|
T Consensus       354 YG~TE~~~~~~~~~~---~~~~~~~vG~p~~~~~v~i~d~~g~~~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f  430 (570)
T 3c5e_A          354 YGQTETGLTCMVSKT---MKIKPGYMGTAASCYDVQIIDDKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANI  430 (570)
T ss_dssp             EEETTTEEEEECCTT---SCCCTTCCCEECTTCCEEEECTTSCBCCTTCCEEEEEECSSBCCTTCCCEETTCHHHHHHTE
T ss_pred             cchhhcccceecCcc---cccCCCcccccCCCceEEEECCCCCCCCCCCCCeeEEeccCCCCchhhccccCChhHhhhhh
Confidence            999999976655432   235678999999 7999999999999999999999999     9999999999999999999


Q ss_pred             cCCceecCceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          385 LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       385 ~~g~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      .+|||+|||+|++|+||++++.||.||+||++|++|+|.|||.+.
T Consensus       431 ~~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~eIE~~l  475 (570)
T 3c5e_A          431 RGDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENAL  475 (570)
T ss_dssp             ETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHH
T ss_pred             cCCccccceeEEEcCCceEEEEecCCCEEEECCEEECHHHHHHHH
Confidence            999999999999999999999999999999999999999999763

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A

Probab=100.00  E-value=1.3e-69  Score=532.21  Aligned_cols=403  Identities=20%  Similarity=0.286  Sum_probs=323.5

Q ss_pred             cccHHHHHHHHHHhcCCcceEEecCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcEE
Q 014065            3 GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATA   82 (431)
Q Consensus         3 ~~tl~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~   82 (431)
                      ..++.++|+++|+++|+++|+++.+ +++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++|+++
T Consensus        74 ~~~l~~~l~~~a~~~pd~~A~~~~~-~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~  152 (570)
T 4gr5_A           74 GACVHELFEAQAARAPDAVALLHEA-DELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGY  152 (570)
T ss_dssp             SCCHHHHHHHHHHHCTTSEEEEETT-EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEE
T ss_pred             cCCHHHHHHHHHHHCCCCeEEECCC-CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHHCCEE
Confidence            4689999999999999999999755 699999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCcccccccccccchhhhhhhccccccccccccCCCCCCC
Q 014065           83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSD  162 (431)
Q Consensus        83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (431)
                      +|++|.++.+++.++++.++++++|++........       .. ......+..         ..............+++
T Consensus       153 vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~-------~~-~~~~~~~~~---------~~~~~~~~~~~~~~~~d  215 (570)
T 4gr5_A          153 TMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRLT-------GT-TTLYVEDEA---------ASDAPAGNLATGVGPED  215 (570)
T ss_dssp             EECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSSC-------SS-EEEECCC----------------CCCCCCCCCTTS
T ss_pred             EEcCCCChHHHHHHHHHhcCCCEEEecchhhhccc-------CC-cceeeeccc---------cccccccccCCCCCCCC
Confidence            99999999999999999999999999876432210       00 000000000         00111112233456799


Q ss_pred             eEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCCCCCCChh
Q 014065          163 VALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSAS  242 (431)
Q Consensus       163 ~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~  242 (431)
                      +++++|||||||.||+|.++|.++.+.+.. ....++.++++++..+|++|..+... ++.++..|+++++.+...+++.
T Consensus       216 ~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~~v~~~~~~~~~~  293 (570)
T 4gr5_A          216 VACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFGLE-LFGALLFGARCVLQSGQNPDPL  293 (570)
T ss_dssp             EEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHHHH-HHHHHTTTCEEEECSSSSCCHH
T ss_pred             eEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHHHHH-HHHHHhcCCEEEEcCCccCCHH
Confidence            999999999999999999999999766544 44567889999999999988766655 8889999999999875567999


Q ss_pred             hHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHh-CCceecccCcccccCccc
Q 014065          243 TFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVLEAYAMTEATHLMS  321 (431)
Q Consensus       243 ~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~-~~~i~~~yg~tE~~~~~~  321 (431)
                      .+++.|+++++|++.++|+++..+++....    .++++|.+++||++++++..+.+.+.+ ++++++.||+||++++.+
T Consensus       294 ~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~----~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~  369 (570)
T 4gr5_A          294 EIGELVARHGVTMLQLSASLFNFLVDEVPE----AFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTT  369 (570)
T ss_dssp             HHHHHHHHHTCCEEEEEHHHHHHHHHHCGG----GGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSE
T ss_pred             HHHHHHHHcCCcEEEecHHHHHHHHhhchh----hCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeee
Confidence            999999999999999999999999876532    378999999999999999999999888 799999999999988766


Q ss_pred             CCCCC-CCCCCCCCCccccc-cceEEEECCCCCcCCCCceeeEEEeCCccccccccCcchhhhcccC---------Ccee
Q 014065          322 SNPLP-EDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF---------GWFH  390 (431)
Q Consensus       322 ~~~~~-~~~~~~~~~~G~~~-~~~~~i~d~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~---------g~~~  390 (431)
                      ..... .+......++|+|+ +++++|+|+++++++.|+.|||+|+||+++.||+++++.+++.|..         |||+
T Consensus       370 ~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~~~~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~  449 (570)
T 4gr5_A          370 HHAVVAGDLSGTALPIGVPLAGKRAYVLDDDLKPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYR  449 (570)
T ss_dssp             EEECCGGGTTSSSCCCBEECTTEEEEEECTTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEE
T ss_pred             eeeecccccCCCccccceeeCCCEEEEECCCCCCCCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEe
Confidence            54322 12234556799999 8999999999999999999999999999999999999999988842         6999


Q ss_pred             cCceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          391 TGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       391 TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      |||+|++|+||+++|+||+||+||++|++|+|.|||.+.
T Consensus       450 TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l  488 (570)
T 4gr5_A          450 TGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARL  488 (570)
T ss_dssp             EEEEEEECTTSCEEEEEC---------------------
T ss_pred             CCCeEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHH
Confidence            999999999999999999999999999999999999874

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}

Probab=100.00  E-value=2.2e-69  Score=526.69  Aligned_cols=417  Identities=24%  Similarity=0.331  Sum_probs=339.5

Q ss_pred             cHHHHHHHHHHhcCCcceEEecCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcEEEe
Q 014065            5 TLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAP   84 (431)
Q Consensus         5 tl~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~   84 (431)
                      ++.++|+++++ +|+++|+++.+ +++||+||+++++++|++|++.|+++||+|+++++|++++++++|||+++|++++|
T Consensus        25 ~~~~~l~~~~~-~p~~~A~~~~~-~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vp  102 (529)
T 2v7b_A           25 FAAYLFRLNET-RAGKTAYIDDT-GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVV  102 (529)
T ss_dssp             HHHHHHHHTGG-GTTSEEEECSS-CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHHHHHHHTCEEEE
T ss_pred             HHHHHHHhhhc-cCCceEEEeCC-CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCceEEe
Confidence            48889999999 99999999765 79999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCcc-cccccccccch-h---hhhhhccccccccccccCCCC
Q 014065           85 LNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNIS-HATATLLDADS-E---LTLSLAHSESDTNAISKLTND  159 (431)
Q Consensus        85 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~  159 (431)
                      +++.++.+++.++++.++++++|++....+............ ...+....... .   ..+..... ............
T Consensus       103 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  181 (529)
T 2v7b_A          103 ANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRESEPRLAPLFEELID-AAAPAAKAAATG  181 (529)
T ss_dssp             CCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC---CCEEEEECC------CCCBHHHHHH-TSCCCSSCCCCC
T ss_pred             cCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhccccCceEEEecccccccccccchhhhhc-cCCCcccccCCC
Confidence            999999999999999999999999988665554443321111 11111111100 0   00110000 001111223456


Q ss_pred             CCCeEEEEeccCCCCCCCeeeechHHH-HHHHHHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCCCCC
Q 014065          160 PSDVALFLHTSGTTSRPKGVPLTQNNL-AASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGR  238 (431)
Q Consensus       160 ~~~~~~i~~TSGtTG~pK~v~~s~~~l-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~  238 (431)
                      ++++++++|||||||.||+|.++|.++ ..........+++.++++++..+|++|.+++...++.++..|+++++.+. .
T Consensus       182 ~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~-~  260 (529)
T 2v7b_A          182 CDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAE-R  260 (529)
T ss_dssp             TTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTSHHHHHHHTHHHHHHTCEEECCCS-C
T ss_pred             CCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHHHHHHHHHHHHHHhcCcEEEEecC-C
Confidence            789999999999999999999999999 56555555567888999999999999999998778889999999998742 6


Q ss_pred             CChhhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHhCCceecccCcccccC
Q 014065          239 FSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATH  318 (431)
Q Consensus       239 ~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~i~~~yg~tE~~~  318 (431)
                      +++..+++.++++++|+++++|+++..+++........ ..++|.+++||+++++++.+.+.+.+++++++.||+||++.
T Consensus       261 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~  339 (529)
T 2v7b_A          261 PTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARA-DVAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLH  339 (529)
T ss_dssp             CCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCCGG-GCCCCEEEECSSCCCHHHHHHHHHHHSCCEEEEEECTTTSS
T ss_pred             CCHHHHHHHHHHhCCEEEEecHHHHHHHHhCccccccc-CCceEEEEEcCCCCCHHHHHHHHHHhCCceeeeEchhhcCc
Confidence            79999999999999999999999999998765432211 24899999999999999999999999999999999999976


Q ss_pred             cccCCCCCCCCCCCCCCccccc-cceEEEECCCCCcCCCCceeeEEEeCCccccccccCcchhhhcccCCceecCceEEE
Q 014065          319 LMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYF  397 (431)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~  397 (431)
                      ++.....   .....+++|+|+ +++++|+|++|++++.|+.|||+++|++++.||+++++.+...|.+|||+|||+|++
T Consensus       340 ~~~~~~~---~~~~~~~~G~p~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~~~~~TGDl~~~  416 (529)
T 2v7b_A          340 IFLSNRA---GAVEYGTTGRPVPGYEIELRDEAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSGDKYCR  416 (529)
T ss_dssp             EEEECCT---TCCCTTSCCEECTTCEEEEECTTSCBCCTTSCEEEEEECTTCCCCBTTCHHHHHHHEETTEEEEEEEEEE
T ss_pred             eeecccc---CCCccCCcccCCCCCEEEEECCCCCCCCCCCccEEEEecCCcccccCCChHHHHHhhhcCCcccCceEEE
Confidence            6555432   224567899999 899999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCeEEEecccccceecCCeeccccceeccc
Q 014065          398 DSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       398 ~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      |+||++++.||.||+||++|++|+|.|||.+.
T Consensus       417 ~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l  448 (529)
T 2v7b_A          417 LPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVL  448 (529)
T ss_dssp             CTTSCEEEEEEGGGCBC----CBCHHHHHHHH
T ss_pred             CCCccEEEeCccCCeEEECCEEECHHHHHHHH
Confidence            99999999999999999999999999999864

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*

Probab=100.00  E-value=4.6e-69  Score=534.96  Aligned_cols=423  Identities=22%  Similarity=0.290  Sum_probs=349.1

Q ss_pred             cHHHHHHHHHHhcCCcceEEec-----CCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhC
Q 014065            5 TLIGLLNQVIDQFSSKRALSVS-----GKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRAR   79 (431)
Q Consensus         5 tl~~~l~~~a~~~p~~~a~~~~-----~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G   79 (431)
                      ++.++|+++++++|+++|+++.     +++++||+||+++++++|++|+++|+++||+|+++++|++++++++|||+++|
T Consensus        77 ~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G  156 (652)
T 1pg4_A           77 LAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIG  156 (652)
T ss_dssp             HHHHHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhccCCCceEEEEEcCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcC
Confidence            5778999999999999999973     23689999999999999999999999999999999999999999999999999


Q ss_pred             cEEEecCCCCCHHHHHHHHhcCCceEEEecCCch---------hHHHHHHHhcC--cccccccccccc--------hhhh
Q 014065           80 ATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGN---------AAAQAAASKLN--ISHATATLLDAD--------SELT  140 (431)
Q Consensus        80 ~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~~~~~~~~~--~~~~~~~~~~~~--------~~~~  140 (431)
                      ++++|+++.++.+++.+++++++++++|+++...         ....+......  .....+.+....        ....
T Consensus       157 av~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~  236 (652)
T 1pg4_A          157 AVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLW  236 (652)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCCCBTTEEE
T ss_pred             cEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCcccccCCCcee
Confidence            9999999999999999999999999999987642         22223222211  001111111000        0000


Q ss_pred             hhhccccccccccccCCCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHH-HHHHHhcCCCCCeEEEecChhhHHHHHH
Q 014065          141 LSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVS-NIKSVYKLTESDSTVIVLPLFHVHGMLA  219 (431)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~  219 (431)
                      +....... ..........++++++++|||||||.||+|+++|.+++..+. .....+++.++|++++..|++|.+++..
T Consensus       237 ~~~~~~~~-~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~  315 (652)
T 1pg4_A          237 WRDLIEKA-SPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSY  315 (652)
T ss_dssp             HHHHHTTS-CSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHH
T ss_pred             HHHHHhhc-CCCCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEccCCeeeechHH
Confidence            11100000 011122234578999999999999999999999999887664 4556788999999999999999999977


Q ss_pred             HHHHHHhcCCEEEeCCCC--CCChhhHHHHHHHhcceeeecchHHHHHHHhcccC-CCCCCCCCccEEEeccCCCcHHHH
Q 014065          220 GLLSSFAAGAAVTLPAAG--RFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVA-KPEPVYPKLRFIRSCSASLAPVIL  296 (431)
Q Consensus       220 ~~~~~l~~G~~~~~~~~~--~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~-~~~~~~~~l~~i~~~g~~~~~~~~  296 (431)
                      .++.+|..|+++++.+..  .+++..+++.|+++++|+++++|++++.+.+.... ....+++++|.+++||++++++++
T Consensus       316 ~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~  395 (652)
T 1pg4_A          316 LLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAW  395 (652)
T ss_dssp             TTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHHHH
T ss_pred             HHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecCCCCHHHH
Confidence            789999999999997642  25899999999999999999999999999887542 224468999999999999999999


Q ss_pred             HHHHHHhC---CceecccCcccccCcccCCCCCCCCCCCCCCccccc-cceEEEECCCCCcCCCCceeeEEEeC--Cccc
Q 014065          297 SRLEEAFG---APVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRG--PNVT  370 (431)
Q Consensus       297 ~~~~~~~~---~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d~~~~~~~~~~~Gel~v~~--~~~~  370 (431)
                      +++.+.++   +++++.||+||+++.++.... .......+++|+|+ |++++|+|++|++++.|+.|||+++|  |+++
T Consensus       396 ~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~-~~~~~~~~s~G~p~~g~~v~i~d~~g~~v~~g~~GEl~i~g~~p~~~  474 (652)
T 1pg4_A          396 EWYWKKIGKEKCPVVDTWWQTETGGFMITPLP-GAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSWPGQA  474 (652)
T ss_dssp             HHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCT-TTCCBCTTCCBSBCTTCCEEEECTTCCBCCSSEEEEEEECSCCTTCC
T ss_pred             HHHHHHhCCCCCcEEccccCcccccceecCCC-CCcCccCCccccCcCCCeEEEECCCCCCcCCCceEEEEEccCCCchh
Confidence            99999997   899999999999977666532 22345678999999 89999999999999999999999999  7999


Q ss_pred             cccccCcchhhhcc---cCCceecCceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          371 KGYKNNPEANKSAF---LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       371 ~gy~~~~~~~~~~~---~~g~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      .||+++++.+.+.+   .+|||+|||+|++|+||+++|.||.||+||++|++|+|.|||.+.
T Consensus       475 ~gY~~~~e~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l  536 (652)
T 1pg4_A          475 RTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESAL  536 (652)
T ss_dssp             CEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHH
T ss_pred             hhhcCCHHHHHhhhhhcCCCEEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHH
Confidence            99999998887765   369999999999999999999999999999999999999999863

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*

Probab=100.00  E-value=2.7e-69  Score=524.00  Aligned_cols=409  Identities=21%  Similarity=0.293  Sum_probs=345.0

Q ss_pred             ccHHHHHHHHHHhcCCcceEEecCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcEEE
Q 014065            4 VTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAA   83 (431)
Q Consensus         4 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v   83 (431)
                      ||+.++|+++|+++|+++|+++.+ +++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|++++
T Consensus         1 m~l~~~l~~~a~~~p~~~A~~~~~-~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G~v~v   79 (512)
T 3fce_A            1 MKLLEQIEKWAAETPDQTAFVWRD-AKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAYI   79 (512)
T ss_dssp             CCHHHHHHHHHHHSTTSEEEEETT-EEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTTCCEE
T ss_pred             CcHHHHHHHHHHHCCCceEEEeCC-ceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEE
Confidence            589999999999999999999866 6999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCcccccccccccchhhhhhhccccccccccccCCCCCCCe
Q 014065           84 PLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDV  163 (431)
Q Consensus        84 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (431)
                      |+++.++.+++.++++.+++++++++......        ......   .............  ......+.....++++
T Consensus        80 pl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~--------~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~~~~~d~  146 (512)
T 3fce_A           80 PVDLSIPADRVQRIAENSGAKLLLSATAVTVT--------DLPVRI---VSEDNLKDIFFTH--KGNTPNPEHAVKGDEN  146 (512)
T ss_dssp             EEETTSCHHHHHHHHHHSCCCEEEESSCCCSS--------CCSSEE---EETHHHHHHHHHT--TTCCCCGGGSCCTTSE
T ss_pred             eeCCCCcHHHHHHHHHhcCCCEEEecCccccc--------ccccce---echhhhhhhcccc--cccCCCccccCCCCCe
Confidence            99999999999999999999999998543210        000000   0000000000000  1111122344567999


Q ss_pred             EEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCCCC-CCChh
Q 014065          164 ALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAG-RFSAS  242 (431)
Q Consensus       164 ~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~-~~~~~  242 (431)
                      ++++|||||||.||+|.++|.++.+.+......+++.+++++++.+|++|.+++.. ++.++..|+++++.+.. .+++.
T Consensus       147 a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~  225 (512)
T 3fce_A          147 FYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMD-IYPSLVTGGTLWAIDKDMIARPK  225 (512)
T ss_dssp             EEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHHH-HHHHHHTTCEEEECCHHHHHSHH
T ss_pred             EEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHHH-HHHHHhCCCEEEECCHHHhhCHH
Confidence            99999999999999999999999999998889999999999999999999999876 89999999999998721 15899


Q ss_pred             hHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHh-CCceecccCcccccCccc
Q 014065          243 TFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVLEAYAMTEATHLMS  321 (431)
Q Consensus       243 ~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~-~~~i~~~yg~tE~~~~~~  321 (431)
                      .+++.++++++|++.++|++++.++...... ..+++++|.+++||+++++++.+++.+.| ++++++.||+||+++.++
T Consensus       226 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~  304 (512)
T 3fce_A          226 DLFASLEQSDIQVWTSTPSFAEMCLMEASFS-ESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVT  304 (512)
T ss_dssp             HHHHHHHHHCCCEEEECHHHHHHHTTSTTCS-TTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSE
T ss_pred             HHHHHHHHcCCcEEEecHHHHHHHHhhcccc-chhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhhee
Confidence            9999999999999999999999988765443 34588999999999999999999999999 899999999999998766


Q ss_pred             CCCCCCC--CCCCCCCccccc-cceEEEECCCCCcCCCCceeeEEEeCCccccccccCcchhhhccc----CCceecCce
Q 014065          322 SNPLPED--GPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFL----FGWFHTGDI  394 (431)
Q Consensus       322 ~~~~~~~--~~~~~~~~G~~~-~~~~~i~d~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~----~g~~~TGD~  394 (431)
                      .......  ......++|+|. +++++|+|++|++++.|+.|||+++||+++.||+++++.+++.|.    +|||+|||+
T Consensus       305 ~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDl  384 (512)
T 3fce_A          305 GIHVTEEVLDQYKSLPVGYCKSDCRLLIMKEDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDA  384 (512)
T ss_dssp             EEECCHHHHHHCSSCCCEEECTTCEEEEECSSSCBCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEE
T ss_pred             eEEeccccccccCCCccccccCCcEEEEECCCCCCCCCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCce
Confidence            5432111  123567899999 899999999999999999999999999999999999999999884    469999999


Q ss_pred             EEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          395 GYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       395 ~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      |++ +||++++.||.||+||++|++|+|.|||.+.
T Consensus       385 g~~-~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l  418 (512)
T 3fce_A          385 GYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHL  418 (512)
T ss_dssp             EEE-ETTEEEEEEEGGGCEEETTEEECHHHHHHHH
T ss_pred             EEe-cCCEEEEecccCCEEEECCEEECHHHHHHHH
Confidence            999 8999999999999999999999999999763

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1

Probab=100.00  E-value=5.7e-69  Score=525.77  Aligned_cols=403  Identities=20%  Similarity=0.312  Sum_probs=336.7

Q ss_pred             cccHHHHHHHHHHhcCCcceEEecCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcEE
Q 014065            3 GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATA   82 (431)
Q Consensus         3 ~~tl~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~   82 (431)
                      ..|+.++|+++++++|+++|+++.+ +++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|+++
T Consensus        38 ~~~l~~~l~~~a~~~p~~~Al~~~~-~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~  116 (563)
T 1amu_A           38 DKTIHQLFEEQVSKRPNNVAIVCEN-EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAY  116 (563)
T ss_dssp             TCCHHHHHHHHHHHCTTSEEEEETT-EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEE
T ss_pred             CCcHHHHHHHHHHHCCCCeEEEeCC-ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEE
Confidence            4689999999999999999999755 799999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCcccccccccccchhhhhhhccccccccccccCCCCCCC
Q 014065           83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSD  162 (431)
Q Consensus        83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (431)
                      +|++|.++.+++.++++.++++++|++.+.......    .........+.. .   .+..     ...........+++
T Consensus       117 vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~----~~~~~~~~~~~~-~---~~~~-----~~~~~~~~~~~~~d  183 (563)
T 1amu_A          117 VPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHN----IQFNGQVEIFEE-D---TIKI-----REGTNLHVPSKSTD  183 (563)
T ss_dssp             EECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTT----SCCCSEEEECCC-S---TTTT-----SCCSCCCCCCCTTS
T ss_pred             EEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhh----ccccCceeeecc-h---hhcc-----ccCccCCCCCCCCC
Confidence            999999999999999999999999998765432211    111100110100 0   0000     00111123346789


Q ss_pred             eEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCCCC-CCCh
Q 014065          163 VALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAG-RFSA  241 (431)
Q Consensus       163 ~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~-~~~~  241 (431)
                      +++++|||||||.||+|.++|.++.+.+......+++.++|++++.+|++|..+++. ++.++..|+++++.+.. .+++
T Consensus       184 ~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~~v~~~~~~~~~~  262 (563)
T 1amu_A          184 LAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWE-MFMALLTGASLYIILKDTINDF  262 (563)
T ss_dssp             EEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHH-HHHHHTTTCEEEECCHHHHTCH
T ss_pred             eEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHH-HHHHHHCCCEEEEcChHhhcCH
Confidence            999999999999999999999999988888888889999999999999999998875 78899999999987621 1588


Q ss_pred             hhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHhCCceecccCcccccCccc
Q 014065          242 STFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMS  321 (431)
Q Consensus       242 ~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~  321 (431)
                      ..+++.++++++|++.++|+++..+...       .++++|.+++||+++++++.+.+.+.  +++++.||+||++.+++
T Consensus       263 ~~~~~~i~~~~~t~~~~~P~~~~~l~~~-------~~~~lr~~~~gG~~l~~~~~~~~~~~--~~~~~~YG~TE~~~~~~  333 (563)
T 1amu_A          263 VKFEQYINQKEITVITLPPTYVVHLDPE-------RILSIQTLITAGSATSPSLVNKWKEK--VTYINAYGPTETTICAT  333 (563)
T ss_dssp             HHHHHHHHHTTCCEEEECHHHHTTSCTT-------TCCSCSEEEEESSCCCHHHHHHHTTT--SEEEEEECCGGGSSCSE
T ss_pred             HHHHHHHHHcCCcEEEeCHHHHHHHHhc-------ccccccEEEEEEecCCHHHHHHHHhC--CeEEEEECcCHHhHhhe
Confidence            9999999999999999999998776432       35789999999999999999998763  78999999999997766


Q ss_pred             CCCCCCCCCCCCCCccccc-cceEEEECCCCCcCCCCceeeEEEeCCccccccccCcchhhhcccC-------CceecCc
Q 014065          322 SNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF-------GWFHTGD  393 (431)
Q Consensus       322 ~~~~~~~~~~~~~~~G~~~-~~~~~i~d~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~-------g~~~TGD  393 (431)
                      .............++|+|+ +++++|+|++|++++.|+.|||+++||+++.||+++++.+++.|.+       +||+|||
T Consensus       334 ~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGD  413 (563)
T 1amu_A          334 TWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGD  413 (563)
T ss_dssp             EEECCSSCCCSSCCCBEECTTEEEEEECTTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEE
T ss_pred             eeecccccCCCCCcccceeCCCEEEEECCCcCCCCCCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCC
Confidence            5433222334567899999 8999999999999999999999999999999999999999888843       4999999


Q ss_pred             eEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          394 IGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       394 ~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      +|++|+||++++.||.||+||++|++|+|.|||.+.
T Consensus       414 lg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l  449 (563)
T 1amu_A          414 QARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESIL  449 (563)
T ss_dssp             EEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHH
T ss_pred             EEEEcCCCeEEEeccccCEEEECCEEeCHHHHHHHH
Confidence            999999999999999999999999999999999864

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1

Probab=100.00  E-value=1.7e-68  Score=531.07  Aligned_cols=425  Identities=20%  Similarity=0.304  Sum_probs=348.4

Q ss_pred             ccHHHHHHHHHHhcCCcceEEec-----CCCcccHHHHHHHHHHHHHHHH-HcCCCCCCEEEEECCCcHHHHHHHHHHHH
Q 014065            4 VTLIGLLNQVIDQFSSKRALSVS-----GKFDLTYSRIHELVERAASRLV-AAGINAGDVVALTFPNTVEFVIMFLAVIR   77 (431)
Q Consensus         4 ~tl~~~l~~~a~~~p~~~a~~~~-----~~~~~Ty~el~~~~~~~a~~L~-~~gl~~gd~V~i~~~n~~~~~~~~lA~~~   77 (431)
                      .++.++|+++++++|+++|+++.     +++++||+||.++++++|++|+ ++|+++||+|+++++|++++++++|||++
T Consensus        82 n~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~  161 (663)
T 1ry2_A           82 NACYNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISR  161 (663)
T ss_dssp             CHHHHHTHHHHTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHhccCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Confidence            36788999999999999999973     2368999999999999999999 99999999999999999999999999999


Q ss_pred             hCcEEEecCCCCCHHHHHHHHhcCCceEEEecCCchh---------HHHHHHHhcCcccccccccccc---------hhh
Q 014065           78 ARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNA---------AAQAAASKLNISHATATLLDAD---------SEL  139 (431)
Q Consensus        78 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~---------~~~  139 (431)
                      +|++++|+++.++.+++.+++++++++++|+++....         .+.+...........+.+....         ...
T Consensus       162 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~  241 (663)
T 1ry2_A          162 IGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDL  241 (663)
T ss_dssp             TTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCCCCSSSEE
T ss_pred             cCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCccccCCCccc
Confidence            9999999999999999999999999999999876432         2222222111111111111000         000


Q ss_pred             hhhhccccccccccccCCCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHH-HHHHHhcCCCCCeEEEecChhhHHHHH
Q 014065          140 TLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVS-NIKSVYKLTESDSTVIVLPLFHVHGML  218 (431)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~  218 (431)
                      .+..... ............++++++++|||||||.||+|+++|.+++..+. .....+++.++|++++..|++|.+++.
T Consensus       242 ~~~~~~~-~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~  320 (663)
T 1ry2_A          242 DWATEKK-KYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHT  320 (663)
T ss_dssp             EHHHHHT-TSCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHH
T ss_pred             cHHHHHh-hcCCCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEcCCcHHhhhhH
Confidence            0110000 00011122334578999999999999999999999999876654 455678899999999999999999987


Q ss_pred             HHHHHHHhcCCEEEeCCCC--CCChhhHHHHHHHhcceeeecchHHHHHHHhcccC-CCCCCCCCccEEEeccCCCcHHH
Q 014065          219 AGLLSSFAAGAAVTLPAAG--RFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVA-KPEPVYPKLRFIRSCSASLAPVI  295 (431)
Q Consensus       219 ~~~~~~l~~G~~~~~~~~~--~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~-~~~~~~~~l~~i~~~g~~~~~~~  295 (431)
                      ..++.+|..|+++++.+..  .+++..+++.|+++++|+++++|++++.+.+.... ....+++++|.+++||+++++++
T Consensus       321 ~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~  400 (663)
T 1ry2_A          321 YVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEV  400 (663)
T ss_dssp             HTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCHHH
T ss_pred             HHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcCCCCHHH
Confidence            7789999999999987632  25899999999999999999999999999876542 12346899999999999999999


Q ss_pred             HHHHHHHhC---CceecccCcccccCcccCCCCCCCCCCCCCCccccc-cceEEEECC-CCCcCCC-CceeeEEEeC--C
Q 014065          296 LSRLEEAFG---APVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDE-IGVPQEG-GAKGEVCIRG--P  367 (431)
Q Consensus       296 ~~~~~~~~~---~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d~-~~~~~~~-~~~Gel~v~~--~  367 (431)
                      ++++.+.++   +++++.||+||+++.++...........++++|+|+ |++++|+|+ +|++++. |+.|||+++|  |
T Consensus       401 ~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~~Gel~i~g~~p  480 (663)
T 1ry2_A          401 WEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWP  480 (663)
T ss_dssp             HHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEESSCCT
T ss_pred             HHHHHHHhCCCCceEEEeECCccccCeeeccCCCCCcccCCCccccCcCCCeEEEEcCCCCCcCCCCCcceEEEEecCCC
Confidence            999999887   899999999999977666532122345678999999 899999998 8999988 9999999999  5


Q ss_pred             ccccccccCcchhhhccc---CCceecCceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          368 NVTKGYKNNPEANKSAFL---FGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       368 ~~~~gy~~~~~~~~~~~~---~g~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      +++.||+++++.+.+.|.   +|||+|||+|++|+||+++|.||.||+||++|++|+|.|||.+.
T Consensus       481 ~~~~gy~~~~~~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l  545 (663)
T 1ry2_A          481 SFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAI  545 (663)
T ss_dssp             TSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHH
T ss_pred             chhcccccChHHHHHhhhcCCCCEEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHHHHHHHH
Confidence            899999999998877763   69999999999999999999999999999999999999999864

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}

Probab=100.00  E-value=2.5e-68  Score=527.53  Aligned_cols=419  Identities=23%  Similarity=0.337  Sum_probs=350.8

Q ss_pred             CcccHHHHHHHHHHhcCCcceEEecCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcE
Q 014065            2 EGVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARAT   81 (431)
Q Consensus         2 ~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~   81 (431)
                      .++|+.++|+++|+  ||++|+++.+ +++||+||+++++++|++|++.|+++||+|+++++|++++++++|||+++|++
T Consensus        25 ~~~~l~~~~~~~a~--pd~~Av~~~~-~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA~l~aG~~  101 (617)
T 3rg2_A           25 QDLPLTDILTRHAA--SDSIAVIDGE-RQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVA  101 (617)
T ss_dssp             CCCCTTHHHHTTTT--CCSEEEEETT-EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCE
T ss_pred             CcCCHHHHHHHhhC--CCCeEEecCC-ceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhcCeE
Confidence            46789999999887  9999999755 79999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHHHHhcCCceEEEecCCch-----hHHHHHHHhcCcccccccccccchhhhhhhccccccccccccC
Q 014065           82 AAPLNAAYTPDEFEFYLSDSESKLLLTPAEGN-----AAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKL  156 (431)
Q Consensus        82 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (431)
                      ++|++|..+.+++.++++.+++++++++....     ....................+. ....+..... .........
T Consensus       102 ~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~  179 (617)
T 3rg2_A          102 PVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDS-GEHNLQDAIN-HPAEDFTAT  179 (617)
T ss_dssp             EEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCC-STTBHHHHHH-SCCSSCCCC
T ss_pred             EccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccc-cccchhhhhc-ccccccCCC
Confidence            99999999999999999999999999997653     2222222222111111111111 1000100000 011112233


Q ss_pred             CCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHHHHHH-HHHHHHhcCCEEEeCC
Q 014065          157 TNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLA-GLLSSFAAGAAVTLPA  235 (431)
Q Consensus       157 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~l~~G~~~~~~~  235 (431)
                      ...++++++++|||||||.||+|.++|.++.+.+......+++.+++++++.+|++|.+++.. .++.++..|+++++.+
T Consensus       180 ~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~~  259 (617)
T 3rg2_A          180 PSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAA  259 (617)
T ss_dssp             CCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEECS
T ss_pred             CCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEeC
Confidence            456789999999999999999999999999999999999999999999999999999988765 5888999999999987


Q ss_pred             CCCCChhhHHHHHHHhcceeeecchHHHHHHHhcccCCC-CCCCCCccEEEeccCCCcHHHHHHHHHHhCCceecccCcc
Q 014065          236 AGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKP-EPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMT  314 (431)
Q Consensus       236 ~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~-~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~i~~~yg~t  314 (431)
                        ..++..+++.++++++|++.++|+++..+++...... ...++++|.+++||+++++++.+++.+.++++++|.||+|
T Consensus       260 --~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~~YG~t  337 (617)
T 3rg2_A          260 --DPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMA  337 (617)
T ss_dssp             --SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCHHHHHHHHHHTCSEEEEEEEET
T ss_pred             --CCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCHHHHHHHHHHhCCcEEEEeccC
Confidence              6789999999999999999999999999988754332 2358899999999999999999999999999999999999


Q ss_pred             cccCcccCCCCCCCCCCCCCCccccc--cceEEEECCCCCcCCCCceeeEEEeCCccccccccCcchhhhcc-cCCceec
Q 014065          315 EATHLMSSNPLPEDGPHKPGSVGRPV--GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAF-LFGWFHT  391 (431)
Q Consensus       315 E~~~~~~~~~~~~~~~~~~~~~G~~~--~~~~~i~d~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~T  391 (431)
                      |++..+.....  .......++|+|+  +.+++|+|+++++++.|+.|||+++|+++++||+++++.+++.| .++||+|
T Consensus       338 E~~~~~~~~~~--~~~~~~~~~G~p~~~~~~~~i~d~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrT  415 (617)
T 3rg2_A          338 EGLVNYTRLDD--SAEKIIHTQGYPMCPDDEVWVADAEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCS  415 (617)
T ss_dssp             TEEEEECCTTS--CHHHHHHCCCEESCTTCEEEEECTTSCBCCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEE
T ss_pred             cceeecccCCC--cccccccCCCccCCCCceEEEECCCCCCCCCCCceEEEecCccccchhcCChhhhhhccCCCCceec
Confidence            99865543321  1122335789997  47999999999999999999999999999999999999999999 5799999


Q ss_pred             CceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          392 GDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       392 GD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      ||+|++++||.+++.||.||+||++|++|+|.|||.+.
T Consensus       416 GDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l  453 (617)
T 3rg2_A          416 GDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLL  453 (617)
T ss_dssp             EEEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHH
T ss_pred             CceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHH
Confidence            99999999999999999999999999999999999864

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*

Probab=100.00  E-value=4.4e-68  Score=515.09  Aligned_cols=407  Identities=22%  Similarity=0.320  Sum_probs=345.9

Q ss_pred             ccHHHHHHHHHHhcCCcceEEecCCCcccHHHHHHHHHHHHHHHHHc-CCCCCCEEEEECCCcHHHHHHHHHHHHhCcEE
Q 014065            4 VTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAA-GINAGDVVALTFPNTVEFVIMFLAVIRARATA   82 (431)
Q Consensus         4 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~~-gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~   82 (431)
                      +|+.++|+++|+++|+++|+++.+ +++||+||.++++++|++|++. |.++||+|+++++|++++++++|||+++|+++
T Consensus         1 m~l~~~l~~~a~~~p~~~Al~~~~-~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~   79 (511)
T 3e7w_A            1 MKLLHAIQTHAETYPQTDAFRSQG-QSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHPY   79 (511)
T ss_dssp             CCHHHHHHHHHHHSTTSEEEEETT-EEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHHTCCE
T ss_pred             CcHHHHHHHHHHHCCCCeEEEcCC-ceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHhCCEE
Confidence            589999999999999999999755 7999999999999999999985 88899999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCcccccccccccchhhhhhhccccccccccccCCCCCCC
Q 014065           83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSD  162 (431)
Q Consensus        83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (431)
                      +|+++.++.+++.++++.++++++|++......      .........     ... .+...   ............+++
T Consensus        80 vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~------~~~~~~~~~-----~~~-~~~~~---~~~~~~~~~~~~~~~  144 (511)
T 3e7w_A           80 IPVDLSIPSERIAKIIESSGAELLIHAAGLSID------AVGQQIQTV-----SAE-ELLEN---EGGSVSQDQWVKEHE  144 (511)
T ss_dssp             EEEETTSCHHHHHHHHHHHTCCEEEESSSCCTT------CCCCSSCEE-----EHH-HHHTS---CSCCCCGGGSCCTTS
T ss_pred             EecCCCChHHHHHHHHHhCCCCEEEecccccch------hccccccee-----cHh-hhhcc---ccCCccccccCCCCC
Confidence            999999999999999999999999997643210      000000000     000 00000   111122233456789


Q ss_pred             eEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCCCC-CCCh
Q 014065          163 VALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAG-RFSA  241 (431)
Q Consensus       163 ~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~-~~~~  241 (431)
                      +++++|||||||.||+|.++|.++...+......+++.+++++++.+|++|.+++.. ++.++..|+++++.+.. .+++
T Consensus       145 ~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~  223 (511)
T 3e7w_A          145 TFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMD-LYPCLQSGGTLHCVTKDAVNKP  223 (511)
T ss_dssp             EEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHHHH-HHHHHHTTCEEEECCHHHHHSH
T ss_pred             eEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHHHH-HHHHHhcCCEEEEcChhhhcCH
Confidence            999999999999999999999999999998888999999999999999999999766 89999999999987621 1588


Q ss_pred             hhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHh-CCceecccCcccccCcc
Q 014065          242 STFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVLEAYAMTEATHLM  320 (431)
Q Consensus       242 ~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~-~~~i~~~yg~tE~~~~~  320 (431)
                      ..+++.++++++|++.++|+++..+++..... ...++++|.+++||+++++++.+.+.+.| ++++++.||+||+++.+
T Consensus       224 ~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~  302 (511)
T 3e7w_A          224 KVLFEELKKSGLNVWTSTPSFVQMCLMDPGFS-QDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAV  302 (511)
T ss_dssp             HHHHHHHHHHCCSEEEECHHHHHHHHTSTTCS-TTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCS
T ss_pred             HHHHHHHHHcCCcEEEecHHHHHHHHhccccc-cccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeee
Confidence            99999999999999999999999998775433 34578999999999999999999999999 89999999999999876


Q ss_pred             cCCCCCCC--CCCCCCCccccc-cceEEEECCCCCcCCCCceeeEEEeCCccccccccCcchhhhccc--CC--ceecCc
Q 014065          321 SSNPLPED--GPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFL--FG--WFHTGD  393 (431)
Q Consensus       321 ~~~~~~~~--~~~~~~~~G~~~-~~~~~i~d~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~--~g--~~~TGD  393 (431)
                      +......+  ......++|+|+ +++++|+|++|++++.|+.|||+++||+++.||+++++.+++.|.  +|  ||+|||
T Consensus       303 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGD  382 (511)
T 3e7w_A          303 TSVEITNDVISRSESLPVGFAKPDMNIFIMDEEGQPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGD  382 (511)
T ss_dssp             EEEEECHHHHTTCSSCCCBEECTTCEEEEECTTSCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEE
T ss_pred             eEEeccccccccCCcCCCcceeCCCEEEEECCCCCCCCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCC
Confidence            65432111  234556799999 899999999999999999999999999999999999999999883  44  899999


Q ss_pred             eEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          394 IGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       394 ~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      +|++ +||++++.||.||+||++|++|+|.|||.+.
T Consensus       383 lg~~-~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l  417 (511)
T 3e7w_A          383 AGFI-QDGQIFCQGRLDFQIKLHGYRMELEEIEFHV  417 (511)
T ss_dssp             EEEE-ETTEEEEEEESSSEEEETTEEEEHHHHHHHH
T ss_pred             eEEc-cCCeEEEEccccCEEEECCEEeCHHHHHHHH
Confidence            9999 6999999999999999999999999999763

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*

Probab=100.00  E-value=1.6e-68  Score=519.87  Aligned_cols=411  Identities=20%  Similarity=0.268  Sum_probs=339.2

Q ss_pred             CCcccHHHHHHHHHHhcCCcceEEecCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCc
Q 014065            1 MEGVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARA   80 (431)
Q Consensus         1 m~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~   80 (431)
                      |...|+.+.|+++|+++|+++|+.+.+ +++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|+
T Consensus         1 m~~~~l~~~l~~~a~~~p~~~a~~~~~-~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~   79 (521)
T 3l8c_A            1 MSLKDMIDSIEQFAQTQADFPVYDCLG-ERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSGH   79 (521)
T ss_dssp             -CCCCHHHHHHHHHHHSTTSEEEEETT-EEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHTTC
T ss_pred             CcHHHHHHHHHHHHHHCCCCcceecCC-CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCC
Confidence            677899999999999999999999755 7999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCcccccccccccchhhhhhhccccccccccccCCCCC
Q 014065           81 TAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDP  160 (431)
Q Consensus        81 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (431)
                      +++|+++.++.+++.++++.++++++|++++......      ..  .....   ........    ............+
T Consensus        80 v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~------~~--~~~~~---~~~~~~~~----~~~~~~~~~~~~~  144 (521)
T 3l8c_A           80 AYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIE------GI--SLVSL---SEIESAKL----AEMPYERTHSVKG  144 (521)
T ss_dssp             CEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCT------TS--EEEEH---HHHHHHHH----HTCCCCCSSCCCT
T ss_pred             EEEecCccccHHHHHHHHHhCCCCEEEecCccccccc------cC--cccch---hhhhhccc----ccCCcccCCCCCC
Confidence            9999999999999999999999999999876432110      00  00000   00000000    0011122334567


Q ss_pred             CCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHH--hcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCCCC-
Q 014065          161 SDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSV--YKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAG-  237 (431)
Q Consensus       161 ~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~--~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~-  237 (431)
                      +++++++|||||||.||+|.++|.++.+.+......  +++.++++++...|++|..++.. ++.++..|+++++.+.. 
T Consensus       145 ~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~l~~G~~~~~~~~~~  223 (521)
T 3l8c_A          145 DDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVMY-WAPTLALGGTLFALPKEL  223 (521)
T ss_dssp             TSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHHH-HHHHHHTTCEEEECCGGG
T ss_pred             CCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHHH-HHHHHhcCCEEEEcCHHH
Confidence            999999999999999999999999999887766655  67788999999999999988766 88899999999987631 


Q ss_pred             CCChhhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHh-CCceecccCcccc
Q 014065          238 RFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVLEAYAMTEA  316 (431)
Q Consensus       238 ~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~-~~~i~~~yg~tE~  316 (431)
                      ..++..+++.+.+++++++.++|+++..+....... ...++++|.+++||++++++..+.+.+.+ ++++++.||+||+
T Consensus       224 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~  302 (521)
T 3l8c_A          224 VADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFC-QAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEA  302 (521)
T ss_dssp             TTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCS-TTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGG
T ss_pred             hhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhccc-cccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHH
Confidence            238899999999999999999999999987765432 34578999999999999999999999998 8999999999999


Q ss_pred             cCcccCCCCCCC--CCCCCCCccccc-cceEEEECCCCCcCCCCceeeEEEeCCccccccccCcchhhhccc----CCce
Q 014065          317 THLMSSNPLPED--GPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFL----FGWF  389 (431)
Q Consensus       317 ~~~~~~~~~~~~--~~~~~~~~G~~~-~~~~~i~d~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~----~g~~  389 (431)
                      ++.++.......  ......++|+|+ +++++|+|++|++++.|+.|||+++||+++.||+++++.+++.|.    +|||
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~  382 (521)
T 3l8c_A          303 TVALSAIEITREMVDNYTRLPIGYPKPDSPTYIIDEDGKELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAY  382 (521)
T ss_dssp             SSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEECTTSCBCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEE
T ss_pred             hhhhceeecccccccCCCccccccccCCCEEEEECCCcCCCCCCCceEEEecccccChhhcCCchHhhccCcCCCCceee
Confidence            987665432111  123456899999 899999999999999999999999999999999999999998872    4799


Q ss_pred             ecCceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          390 HTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       390 ~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      +|||+|++|+||++++.||.||+||++|++|+|.|||.+.
T Consensus       383 ~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l  422 (521)
T 3l8c_A          383 HTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQL  422 (521)
T ss_dssp             EEEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHHHHH
T ss_pred             eCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHHHH
Confidence            9999999999999999999999999999999999999863

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}

Probab=100.00  E-value=2.4e-67  Score=546.24  Aligned_cols=422  Identities=29%  Similarity=0.422  Sum_probs=342.1

Q ss_pred             cccHHHHHHHHHHhcCCcceEEecC-CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcE
Q 014065            3 GVTLIGLLNQVIDQFSSKRALSVSG-KFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARAT   81 (431)
Q Consensus         3 ~~tl~~~l~~~a~~~p~~~a~~~~~-~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~   81 (431)
                      ..|+.++|.++++++|+++|+++.+ ++++||+||+++++++|++|++.|+++||+|+++++|++++++++|||+++|++
T Consensus        60 ~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~  139 (979)
T 3tsy_A           60 HLSLHDYIFQNISEFATKPCLINGPTGHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGAT  139 (979)
T ss_dssp             TSCHHHHHTTTGGGTTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCE
T ss_pred             CCCHHHHHHHHHHhCCCCeEEEECCCCcEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCE
Confidence            4789999999999999999999753 579999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCccccccccccc------chhhhhhhccccc--ccccc
Q 014065           82 AAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDA------DSELTLSLAHSES--DTNAI  153 (431)
Q Consensus        82 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~--~~~~~  153 (431)
                      ++|++|.++.+++.++++.++++++|++....+.+..........  .+.+.+.      .....+.......  .....
T Consensus       140 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (979)
T 3tsy_A          140 ATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVV--IVCIDDNESVPIPEGCLRFTELTQSTTEASEVI  217 (979)
T ss_dssp             EEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTSCCE--EEECCCCTTSCCCTTEEEGGGTSSCCSGGGGGS
T ss_pred             EEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcCCce--EEEeCCcccccCCcccccHHHHhhccccccccC
Confidence            999999999999999999999999999988776665554433221  1111111      0001111111100  01122


Q ss_pred             ccCCCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHH----HhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCC
Q 014065          154 SKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKS----VYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGA  229 (431)
Q Consensus       154 ~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~----~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~  229 (431)
                      ......++++++++|||||||.||+|.++|.++...+.....    .+++.+++++++.+|++|.+++...++.++..|+
T Consensus       218 ~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~  297 (979)
T 3tsy_A          218 DSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGA  297 (979)
T ss_dssp             CCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTC
T ss_pred             CcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCc
Confidence            334467899999999999999999999999999988766543    4567889999999999999999887899999999


Q ss_pred             EEEeCCCCCCChhhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHh-CCcee
Q 014065          230 AVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVL  308 (431)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~-~~~i~  308 (431)
                      ++++.+  .+++..+++.++++++|++.++|+++..+++..... ..+++++|.+++||+++++++.+++.+.| +++++
T Consensus       298 ~~v~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~  374 (979)
T 3tsy_A          298 AILIMP--KFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETE-KYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLG  374 (979)
T ss_dssp             EEEECS--SCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGG-TSCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEE
T ss_pred             EEEEeC--CCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCcccc-CCCccceEEEEEcCCCCCHHHHHHHHHHCCCCeEE
Confidence            999987  789999999999999999999999999998876543 34579999999999999999999999999 89999


Q ss_pred             cccCcccccCcccCCCC--CCCCCCCCCCccccc-cceEEEEC-CCCCcCCCCceeeEEEeCCccccccccCcchhhhcc
Q 014065          309 EAYAMTEATHLMSSNPL--PEDGPHKPGSVGRPV-GQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAF  384 (431)
Q Consensus       309 ~~yg~tE~~~~~~~~~~--~~~~~~~~~~~G~~~-~~~~~i~d-~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~  384 (431)
                      +.||+||++++++....  ........+++|+|+ +++++|+| ++|++++.|+.|||+|+||++++||+++++.+++.|
T Consensus       375 ~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~g~~v~~GY~~~p~~t~~~f  454 (979)
T 3tsy_A          375 QGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETI  454 (979)
T ss_dssp             ECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHB
T ss_pred             eeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCCCCCccEEEEECCCccccccCChhhhhhhc
Confidence            99999999977654321  122345678999999 89999999 559999999999999999999999999999999998


Q ss_pred             -cCCceecCceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          385 -LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       385 -~~g~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                       .+|||+|||+|++|+||+++++||.||+||++|++|+|.|||.+.
T Consensus       455 ~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l  500 (979)
T 3tsy_A          455 DKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALL  500 (979)
T ss_dssp             CTTSCEEEEEEEEECTTSCEEEEEESCC------------------
T ss_pred             cCCCcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHH
Confidence             579999999999999999999999999999999999999999874

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*

Probab=100.00  E-value=4.3e-68  Score=525.04  Aligned_cols=418  Identities=21%  Similarity=0.310  Sum_probs=344.7

Q ss_pred             CcccHHHHHHHHHHhcCCcceEEecC---CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHh
Q 014065            2 EGVTLIGLLNQVIDQFSSKRALSVSG---KFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRA   78 (431)
Q Consensus         2 ~~~tl~~~l~~~a~~~p~~~a~~~~~---~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~   78 (431)
                      ..+|+.++|+++|+++|+++|+++.+   ++++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++
T Consensus         9 ~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~   88 (590)
T 3kxw_A            9 QCQSLVDVVRLRALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYA   88 (590)
T ss_dssp             TCSSHHHHHHHHHHHCTTSEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred             CcccHHHHHHHHHHhCCCCeEEEEEcCCeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHHh
Confidence            46899999999999999999998743   479999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEecCCCCC---HHHHHHHHhcCCceEEEecCCchhHHHHHH-HhcCcccccccccccchhhhhhhccccccccccc
Q 014065           79 RATAAPLNAAYT---PDEFEFYLSDSESKLLLTPAEGNAAAQAAA-SKLNISHATATLLDADSELTLSLAHSESDTNAIS  154 (431)
Q Consensus        79 G~~~v~l~~~~~---~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (431)
                      |++++|++|..+   .+++.++++.+++++++++.+......... ....... ......      ..... ........
T Consensus        89 G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~~~~~-~~~~~~~~  160 (590)
T 3kxw_A           89 GCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFL-KIPAIA------LESIE-LNRSSSWQ  160 (590)
T ss_dssp             TCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEET-TEEEEE------GGGCC-GGGGGGCC
T ss_pred             CcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhccccc-ccceee------chhcc-ccccccCC
Confidence            999999999884   578999999999999999876443332111 1000000 000000      00000 01111122


Q ss_pred             cCCCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeC
Q 014065          155 KLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLP  234 (431)
Q Consensus       155 ~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~  234 (431)
                      .....++++++++|||||||.||+|.++|.+++..+......+++.+++++++.+|++|.+++...++.+++.|+++++.
T Consensus       161 ~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~  240 (590)
T 3kxw_A          161 PTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMM  240 (590)
T ss_dssp             CCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEEC
T ss_pred             CCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEe
Confidence            34556889999999999999999999999999999999999999999999999999999999988789999999999998


Q ss_pred             CCCCC--ChhhHHHHHHHhcceeeecchHHHHHHHhcccC--CCCCCCCCccEEEeccCCCcHHHHHHHHHHhC------
Q 014065          235 AAGRF--SASTFWQDMIKYNATWYTAVPTIHQIVLDRHVA--KPEPVYPKLRFIRSCSASLAPVILSRLEEAFG------  304 (431)
Q Consensus       235 ~~~~~--~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~--~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~------  304 (431)
                      +...+  ++..+++.|+++++|++.++|.++..+++....  ....+++++|.+++||+++++++.+++.+.++      
T Consensus       241 ~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~  320 (590)
T 3kxw_A          241 SPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRK  320 (590)
T ss_dssp             CHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCG
T ss_pred             CHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCc
Confidence            72112  789999999999999999999999998876322  22445899999999999999999999999883      


Q ss_pred             CceecccCcccccCcccCCCCC------------------------CCCCCCCCCccccccceEEEECCC-CCcCCCCce
Q 014065          305 APVLEAYAMTEATHLMSSNPLP------------------------EDGPHKPGSVGRPVGQEIAILDEI-GVPQEGGAK  359 (431)
Q Consensus       305 ~~i~~~yg~tE~~~~~~~~~~~------------------------~~~~~~~~~~G~~~~~~~~i~d~~-~~~~~~~~~  359 (431)
                      .++++.||+||++++++.....                        ........++|+|++. ++|+|++ +++++.|+.
T Consensus       321 ~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~-v~i~d~~~~~~~~~g~~  399 (590)
T 3kxw_A          321 EAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE-VKIIDPDTLIPCDFDQV  399 (590)
T ss_dssp             GGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE-EEEECTTTCCBCCTTBC
T ss_pred             cccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC-eEEEcCCCCcCCCCCCE
Confidence            4699999999999877654321                        0112234678999843 8999976 899999999


Q ss_pred             eeEEEeCCccccccccCcchhhhcccC-------C--ceecCceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          360 GEVCIRGPNVTKGYKNNPEANKSAFLF-------G--WFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       360 Gel~v~~~~~~~gy~~~~~~~~~~~~~-------g--~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      |||+|+||+++.||+++++.+++.|.+       |  ||+|||+|++| ||.++++||.||+||++|++|+|.|||.+.
T Consensus       400 GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l  477 (590)
T 3kxw_A          400 GEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIIIYGKNHYPQDIEFSL  477 (590)
T ss_dssp             EEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHHHHHTTHHHHHHHHH
T ss_pred             EEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEECCEecCHHHHHHHH
Confidence            999999999999999999999998854       5  99999999999 999999999999999999999999999763

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=100.00  E-value=5.5e-68  Score=513.68  Aligned_cols=407  Identities=23%  Similarity=0.303  Sum_probs=334.2

Q ss_pred             ccHHHHHHHHHHhcCCcceEEecCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcEEE
Q 014065            4 VTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAA   83 (431)
Q Consensus         4 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v   83 (431)
                      +||.++|.++|+++|+++|+++.+ +++||+||.++++++|++|++.   +||+|+++++|++++++++|||+++|++++
T Consensus         1 mtl~~~l~~~a~~~pd~~Al~~~~-~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v   76 (501)
T 3ipl_A            1 MSLDFWLYKQAQQNGHHIAITDGQ-ESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACWLANIEIA   76 (501)
T ss_dssp             --CCCHHHHHHHHHTTSEEEECSS-CEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHHHTTCEEE
T ss_pred             CCHHHHHHHHHHhcCCceEEEeCC-cEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHHHcCCEEE
Confidence            578899999999999999999755 7999999999999999999986   899999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCcccccccc-ccc----chhhhhh----hccccccccccc
Q 014065           84 PLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATL-LDA----DSELTLS----LAHSESDTNAIS  154 (431)
Q Consensus        84 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~----~~~~~~~~~~~~  154 (431)
                      |+++.++.+++.++++.++++++|++....................... ...    .......    ............
T Consensus        77 pl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (501)
T 3ipl_A           77 MINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAGRDITTNGLLDNTMGIQYDTSNETVVPKESPSNIL  156 (501)
T ss_dssp             ECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEETTC--------------------------------CCHHHHT
T ss_pred             ecCccCCHHHHHHHHHhcCCCEEEEccccccccccccccccceeeeeecccccccccccccccccchhhccccCCccccc
Confidence            9999999999999999999999999876443221000000000000000 000    0000000    000001111122


Q ss_pred             cCCCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeC
Q 014065          155 KLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLP  234 (431)
Q Consensus       155 ~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~  234 (431)
                      .....++++++++|||||||.||+|.++|.++...+......+++.+++++++.+|++|.+++.. ++.++..|+++++.
T Consensus       157 ~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~~~~  235 (501)
T 3ipl_A          157 NTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSV-LLRAVIEGFTVRIV  235 (501)
T ss_dssp             CCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHHH-HHHHHHHTCEEEEC
T ss_pred             ccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHHH-HHHHHHcCceEEeC
Confidence            33457899999999999999999999999999999999889999999999999999999999987 88999999999998


Q ss_pred             CCCCCChhhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHhCCceecccCcc
Q 014065          235 AAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMT  314 (431)
Q Consensus       235 ~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~i~~~yg~t  314 (431)
                      +  .+++..+++.++++++|++.++|++++.+++.....    ..++|.+++||+++++++.+.+.+ +++++++.||+|
T Consensus       236 ~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~----~~~lr~i~~gG~~l~~~~~~~~~~-~~~~~~~~YG~T  308 (501)
T 3ipl_A          236 D--KFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHE----PYNLQKILLGGAKLSATMIETALQ-YNLPIYNSFGMT  308 (501)
T ss_dssp             S--SCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCS----CTTCCEEEECSSCCCHHHHHHHHH-TTCCEEEEEEEG
T ss_pred             C--CCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCC----cCcccEEEEeCCCCCHHHHHHHHH-hCCCEecccccc
Confidence            7  789999999999999999999999999998876443    238999999999999999999987 599999999999


Q ss_pred             cccCcccCCCCCCCCCCCCCCccccc-cceEEEECCCCCcCCCCceeeEEEeCCccccccccCcchhhhcccCCceecCc
Q 014065          315 EATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGD  393 (431)
Q Consensus       315 E~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD  393 (431)
                      |+++.+..... .......+++|+|+ +++++|+|++     .++.|||+++|+.++.||+++++.+.. |.+|||+|||
T Consensus       309 E~~~~~~~~~~-~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~GEl~v~g~~~~~gY~~~~~~t~~-~~~g~~~TGD  381 (501)
T 3ipl_A          309 ETCSQFLTATP-EMLHARPDTVGMPSANVDVKIKNPN-----KEGHGELMIKGANVMNGYLYPTDLTGT-FENGYFNTGD  381 (501)
T ss_dssp             GGTEEEEEECH-HHHHHCTTCCBEECTTCEEEEESCC-----SSCCEEEEEESTTSCSCCSBSTTCCCS-EETTEEEEEE
T ss_pred             ccccceeecCc-cccccCCCCCCCCCCCcEEEEecCC-----CCCccEEEEeccchhhhhCcChhhcch-hcCCceecCC
Confidence            99875544321 11234567899999 8999999975     456799999999999999999998877 8899999999


Q ss_pred             eEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          394 IGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       394 ~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      +|++|+||++++.||.||+||++|++|+|.|||.+.
T Consensus       382 l~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l  417 (501)
T 3ipl_A          382 IAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVA  417 (501)
T ss_dssp             EEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHH
T ss_pred             EEEEcCCCeEEEEccccceEEECCEEECHHHHHHHH
Confidence            999999999999999999999999999999999763

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}

Probab=100.00  E-value=1.7e-66  Score=510.12  Aligned_cols=407  Identities=18%  Similarity=0.233  Sum_probs=314.1

Q ss_pred             CcccHHHHHHHHHHhcCCcceEEecCC---------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHH
Q 014065            2 EGVTLIGLLNQVIDQFSSKRALSVSGK---------FDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMF   72 (431)
Q Consensus         2 ~~~tl~~~l~~~a~~~p~~~a~~~~~~---------~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~   72 (431)
                      ..+|+.++|+++|+++|+++|+++.++         +++||+||.++++++|++|++.|+ +||+|+++++|++++++++
T Consensus        18 ~~~tl~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~~~~   96 (562)
T 3ite_A           18 STVPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAFAII   96 (562)
T ss_dssp             CCCCTTHHHHHHHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHHHHH
Confidence            568999999999999999999987432         689999999999999999999999 7999999999999999999


Q ss_pred             HHHHHhCcEEEecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCcccccccccccchhhhhhhccccccccc
Q 014065           73 LAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNA  152 (431)
Q Consensus        73 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (431)
                      |||+++|++++|+++.++.+++.++++.++++++|+++......       ................ .....  .....
T Consensus        97 lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~-------~~~~~~~~~~~~~~~~-~~~~~--~~~~~  166 (562)
T 3ite_A           97 VGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGV-------ELPPETKVLDTKNQSF-IENLS--TQDTS  166 (562)
T ss_dssp             HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTC-------CCCTTCEEEETTCHHH-HHHHH--HSCCS
T ss_pred             HHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEcccccccc-------ccCccceeecccchhh-hhhcc--ccccc
Confidence            99999999999999999999999999999999999987643221       0000000000000000 00000  00111


Q ss_pred             cccCCCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHH--------hcCCCCCeEEEecChhhHHHHHHHHHHH
Q 014065          153 ISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSV--------YKLTESDSTVIVLPLFHVHGMLAGLLSS  224 (431)
Q Consensus       153 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~--------~~~~~~~~~~~~~p~~~~~~~~~~~~~~  224 (431)
                      .......++++++++|||||||.||+|.++|.++...+..+...        +.+...+++++..|++|..++.. ++.+
T Consensus       167 ~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  245 (562)
T 3ite_A          167 DILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGE-MFLA  245 (562)
T ss_dssp             CCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHH-HHHH
T ss_pred             ccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHH-HHHH
Confidence            11233456888999999999999999999999998877665443        44778899999999999888765 7889


Q ss_pred             HhcCCEEEeCCCCCC-ChhhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHh
Q 014065          225 FAAGAAVTLPAAGRF-SASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF  303 (431)
Q Consensus       225 l~~G~~~~~~~~~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~  303 (431)
                      +..|+++++.+  .+ .+..+++.++++++|++.++|++++.+....     .+++++|.+++||+++++++.+.+.+.+
T Consensus       246 l~~g~~~~~~~--~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~~-----~~~~~lr~~~~gG~~l~~~~~~~~~~~~  318 (562)
T 3ite_A          246 WRFGLCAVTGE--RLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLVP-----EDAPHLVYLGVGGEKMTPRTQQIWSSSD  318 (562)
T ss_dssp             HHTTCEEEECC--HHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCCG-----GGSTTCCEEEEESSCCCHHHHHHHTTCS
T ss_pred             HhcccEEEecc--hhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccCc-----cccCceEEEEEecCCCCHHHHHHHhhCC
Confidence            99999999876  33 3577889999999999999999988774332     2478999999999999999999999888


Q ss_pred             CCceecccCcccccCcccCCCCCCCCCCCCCCccccc-cceEEEECC-CCCcCCCCceeeEEEeCCccccccccCcchhh
Q 014065          304 GAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDE-IGVPQEGGAKGEVCIRGPNVTKGYKNNPEANK  381 (431)
Q Consensus       304 ~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d~-~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~  381 (431)
                      ++++++.||+||++..++.....  ......++|+|+ +++++|+|+ .+.+++.|+.|||+++|++++.||+++++.+.
T Consensus       319 ~~~~~~~YG~TE~~~~~~~~~~~--~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~  396 (562)
T 3ite_A          319 RVALVNVYGPTEVTIGCSAGRIL--PDSDTRCIGHPLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANGYLNRPDAKG  396 (562)
T ss_dssp             SCEEEEEECCGGGCSCSEEEECC--TTSCTTEEEEECTTCEEEEECTTSSCBCCTTSCEEEEEESTTSCCEESSCTTCCS
T ss_pred             CcEEEEeeccchheeeeeeeeec--CCCCCccccccCCCCeEEEEeCCCCCCCCCCCceEEEEeccccchhhCCCccccc
Confidence            99999999999998776654332  234567899999 799999995 58889999999999999999999999999888


Q ss_pred             hcccCC--ceecCceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          382 SAFLFG--WFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       382 ~~~~~g--~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      ..+.+|  ||+|||+|++|+||++++.||.||+||++|++|+|.|||.+.
T Consensus       397 ~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l  446 (562)
T 3ite_A          397 FCDINGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVI  446 (562)
T ss_dssp             EEEETTEEEEEEEEEEEECTTSCEEEEEEC--------------------
T ss_pred             cccCCCCEEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHHHH
Confidence            777777  999999999999999999999999999999999999999873

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*

Probab=100.00  E-value=6.3e-67  Score=505.37  Aligned_cols=395  Identities=31%  Similarity=0.449  Sum_probs=330.6

Q ss_pred             ccHHHHHHHHHHhcCC-cceEEecCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcEE
Q 014065            4 VTLIGLLNQVIDQFSS-KRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATA   82 (431)
Q Consensus         4 ~tl~~~l~~~a~~~p~-~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~   82 (431)
                      .|+.+.|.++++++|+ ++|+++.+ +++||+||.++++++|++|.     .|++|+++++|++++++++|||+++|+++
T Consensus        22 ~tl~~~l~~~a~~~p~d~~Al~~~~-~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~la~~~~Ga~~   95 (505)
T 3nyq_A           22 SSLFPALSPAPTGAPADRPALRFGE-RSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAVVAALLAGVAA   95 (505)
T ss_dssp             --CCTTTSSCCCSGGGGSEEEEETT-EEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHHHHHHHHHTCCE
T ss_pred             chhHHHHHHHHHhCCCCCeEEEECC-eeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHHHHHHHHhCCEE
Confidence            4677788888889997 99999755 79999999999999998874     48899999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCcccccccccccchhhhhhhccccccccccccCCCCCCC
Q 014065           83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSD  162 (431)
Q Consensus        83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (431)
                      +|++|.++.+++.++++.++++++|++.+....     ...... .....         ..    ............+++
T Consensus        96 vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~-----~~~~~~-~~~~~---------~~----~~~~~~~~~~~~~~d  156 (505)
T 3nyq_A           96 VPLNPKSGDKELAHILSDSAPSLVLAPPDAELP-----PALGAL-ERVDV---------DV----RARGAVPEDGADDGD  156 (505)
T ss_dssp             EEECTTCCHHHHHHHHHHHCCSEEEECTTCCCC-----GGGTTS-EEEEC---------CT----TCCCCCCCCCCCTTS
T ss_pred             EEcCCCCCHHHHHHHHHHCCCCEEEECCccccc-----hhhccc-ccccc---------cc----ccccCCCCCCCCCCC
Confidence            999999999999999999999999998652100     000000 00000         00    011112233456789


Q ss_pred             eEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCCCCCCChh
Q 014065          163 VALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSAS  242 (431)
Q Consensus       163 ~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~  242 (431)
                      +++++|||||||.||+|.++|.++...+......+++.+++++++.+|++|.+++...++.++..|+++++.+  .+++.
T Consensus       157 ~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~--~~~~~  234 (505)
T 3nyq_A          157 PALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLG--RFSTE  234 (505)
T ss_dssp             EEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEECS--SCCHH
T ss_pred             eEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEECC--CCChH
Confidence            9999999999999999999999999999999999999999999999999999999877899999999999987  78999


Q ss_pred             hHHHHHHHhcceeeecchHHHHHHHhcccCCC--CCCCCCccEEEeccCCCcHHHHHHHHHHhCCceecccCcccccCcc
Q 014065          243 TFWQDMIKYNATWYTAVPTIHQIVLDRHVAKP--EPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLM  320 (431)
Q Consensus       243 ~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~--~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~  320 (431)
                      .+++.+ ++++|+++++|+++..+++......  ...++++|.+++||+++++++.+++.+.+++++++.||+||++..+
T Consensus       235 ~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~  313 (505)
T 3nyq_A          235 GAAREL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNT  313 (505)
T ss_dssp             HHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECSSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEE
T ss_pred             HHHHHH-hhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEECCCCCCHHHHHHHHHhcCCeeecccchhhccccc
Confidence            999999 8899999999999999987543221  1236789999999999999999999999999999999999999776


Q ss_pred             cCCCCCCCCCCCCCCccccc-cceEEEECCCCCcCCC---CceeeEEEeCCccccccccCcchhhhccc-CCceecCceE
Q 014065          321 SSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEG---GAKGEVCIRGPNVTKGYKNNPEANKSAFL-FGWFHTGDIG  395 (431)
Q Consensus       321 ~~~~~~~~~~~~~~~~G~~~-~~~~~i~d~~~~~~~~---~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~g~~~TGD~~  395 (431)
                      .....   .....+++|+|+ +++++|+|++|++++.   |+.|||+++|++++.||+++++.+++.|. +|||+|||+|
T Consensus       314 ~~~~~---~~~~~~~vG~p~~~~~~~i~d~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~  390 (505)
T 3nyq_A          314 SVRAD---GEPRAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMA  390 (505)
T ss_dssp             ECCTT---SCCCTTCCCEECTTCEEEEC-----CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEE
T ss_pred             ccCCC---CCCCCCCcccCCCCCEEEEECCCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeE
Confidence            65432   345678999999 8999999999998876   89999999999999999999999999995 7999999999


Q ss_pred             EEcCCCeEEEeccc-ccceecCCeeccccceeccc
Q 014065          396 YFDSDGYLHLVGRI-KELINRGGNLHESISLFLAK  429 (431)
Q Consensus       396 ~~~~~g~l~~~gR~-~d~i~~~G~~i~~~~iE~a~  429 (431)
                      ++|+||++++.||+ ||+||++|++|+|.|||.+.
T Consensus       391 ~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l  425 (505)
T 3nyq_A          391 VRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENAL  425 (505)
T ss_dssp             EECTTSCEEEEEESSCCCEEETTEEECHHHHHHHH
T ss_pred             EECCCccEEEeCCccCceEEeCCEEECHHHHHHHH
Confidence            99999999999998 58999999999999999864

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A

Probab=100.00  E-value=7.8e-65  Score=489.71  Aligned_cols=395  Identities=22%  Similarity=0.321  Sum_probs=318.2

Q ss_pred             CCcccHHHHHHHHHHhcCCcceEEecC------C--CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHH
Q 014065            1 MEGVTLIGLLNQVIDQFSSKRALSVSG------K--FDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMF   72 (431)
Q Consensus         1 m~~~tl~~~l~~~a~~~p~~~a~~~~~------~--~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~   72 (431)
                      |..+|+.++|+++|+++|+++|+++.+      +  +++||+||.++++++|++|++.|+ +||+|+++++|++++++++
T Consensus        21 ~~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~   99 (480)
T 3t5a_A           21 MSVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAF   99 (480)
T ss_dssp             ---CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHH
T ss_pred             CCcccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHH
Confidence            677899999999999999999999753      1  689999999999999999999996 9999999999999999999


Q ss_pred             HHHHHhCcEEEecCC---CCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCccc--ccccccccchhhhhhhcccc
Q 014065           73 LAVIRARATAAPLNA---AYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISH--ATATLLDADSELTLSLAHSE  147 (431)
Q Consensus        73 lA~~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  147 (431)
                      |||+++|++++|+++   .++.+++.++++.++++++|++....+.............  ..+..         .... .
T Consensus       100 lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~-~  169 (480)
T 3t5a_A          100 LGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEV---------DLLD-L  169 (480)
T ss_dssp             HHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEG---------GGSC-T
T ss_pred             HHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEe---------cccc-c
Confidence            999999999999999   7789999999999999999999887665544322211100  00000         0000 0


Q ss_pred             ccccccccCCCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCC------CCeEEEecChhhHHHHHHHH
Q 014065          148 SDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTE------SDSTVIVLPLFHVHGMLAGL  221 (431)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~------~~~~~~~~p~~~~~~~~~~~  221 (431)
                      ............++++++++|||||||.||+|.++|.++..++......+++..      ++++++.+|++|.+++...+
T Consensus       170 ~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~  249 (480)
T 3t5a_A          170 DAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDMGLVIGI  249 (480)
T ss_dssp             TCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEEEECCCTTSTTHHHHHT
T ss_pred             ccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCeEEEeCCCcCccHHHHHH
Confidence            111112234456789999999999999999999999999999988888888877      99999999999999988878


Q ss_pred             HHHHhcCCEEEeCCCCC--CChhhHHHHHHHhcceeeecchHHHHHHHhccc---CCCCCCCCCccEEEeccCCCcHHHH
Q 014065          222 LSSFAAGAAVTLPAAGR--FSASTFWQDMIKYNATWYTAVPTIHQIVLDRHV---AKPEPVYPKLRFIRSCSASLAPVIL  296 (431)
Q Consensus       222 ~~~l~~G~~~~~~~~~~--~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~---~~~~~~~~~l~~i~~~g~~~~~~~~  296 (431)
                      +.++..|+++++.+...  +++..+++.++++++| +..+|+++..++....   .....+++++|.+++||+++++++.
T Consensus       250 ~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~  328 (480)
T 3t5a_A          250 CAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGRDLGNILTILSGSERVQAATI  328 (480)
T ss_dssp             HHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTCCCTTCCEEEECCTTCCHHHH
T ss_pred             HHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcccccccchhhhheeeecCCcCCHHHH
Confidence            99999999999986211  3899999999999999 8899999888876421   1224568999999999999999999


Q ss_pred             HHHHHHhC------CceecccCcccccCcccCCCCCCCC----------------------CCCCCCccccccceEEEEC
Q 014065          297 SRLEEAFG------APVLEAYAMTEATHLMSSNPLPEDG----------------------PHKPGSVGRPVGQEIAILD  348 (431)
Q Consensus       297 ~~~~~~~~------~~i~~~yg~tE~~~~~~~~~~~~~~----------------------~~~~~~~G~~~~~~~~i~d  348 (431)
                      +++.+.++      +.+++.||+||++.+++........                      .....++|+|++++++|+|
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~~~~~ivd  408 (480)
T 3t5a_A          329 KRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRSPIVRIVD  408 (480)
T ss_dssp             HHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSSSEEEEEE
T ss_pred             HHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccCCEEEEEc
Confidence            99999983      3699999999999887765432110                      2334589999889999999


Q ss_pred             CC-CCcCCCCceeeEEEeCCccccccccCcchhhhccc------------CCceecCceEEEcCCCeEEEecc
Q 014065          349 EI-GVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFL------------FGWFHTGDIGYFDSDGYLHLVGR  408 (431)
Q Consensus       349 ~~-~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~------------~g~~~TGD~~~~~~~g~l~~~gR  408 (431)
                      ++ |++++.|+.|||+|+||+++.||+++++.+++.|.            +|||+|||+|++| ||+|+|+||
T Consensus       409 ~~~g~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR  480 (480)
T 3t5a_A          409 SDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR  480 (480)
T ss_dssp             TTTTEECCTTBCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred             CCCCcCCCCCCEEEEEEeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence            66 89999999999999999999999999999999883            4699999999997 999999998

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}

Probab=100.00  E-value=3.2e-64  Score=535.14  Aligned_cols=407  Identities=24%  Similarity=0.325  Sum_probs=343.1

Q ss_pred             cccHHHHHHHHHHhcCCcceEEecCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcEE
Q 014065            3 GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATA   82 (431)
Q Consensus         3 ~~tl~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~   82 (431)
                      ..++.++|+++++++|+++|+++.+ +++||+||+++++++|++|++.|+++|++|+++++|++++++++|||+++|+++
T Consensus       463 ~~~l~~~~~~~~~~~p~~~Av~~~~-~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~lailkaG~~~  541 (1304)
T 2vsq_A          463 TKPLTYWFKEAVNANPDAPALTYSG-QTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAY  541 (1304)
T ss_dssp             CCCHHHHHHHHHHHCTTSEEEESSS-CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHTTCEE
T ss_pred             CCCHHHHHHHHHHhCCCCeEEEECC-eeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHHHHHHCCEE
Confidence            3579999999999999999999755 799999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCcccccccccccchhhhhhhccccccccccccCCCCCCC
Q 014065           83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSD  162 (431)
Q Consensus        83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (431)
                      +|++|.++.+++.++++++++++++++.+.......    .......+.+.+. .  ...      ...........+++
T Consensus       542 vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~----~~~~~~~~~~~~~-~--~~~------~~~~~~~~~~~~~~  608 (1304)
T 2vsq_A          542 LPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAE----LPYTGTTLFIDDQ-T--RFE------EQASDPATAIDPND  608 (1304)
T ss_dssp             EECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTT----CCCCSEEEESSCG-G--GGG------SCSSCCCCCCCTTS
T ss_pred             EEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhc----cCCCCcEEEeccc-c--ccc------cccCCCCCCCCCCC
Confidence            999999999999999999999999998764332110    1111111111110 0  000      01111223456789


Q ss_pred             eEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCCCC-CCCh
Q 014065          163 VALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAG-RFSA  241 (431)
Q Consensus       163 ~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~-~~~~  241 (431)
                      +++++|||||||.||||+++|.++.+. ......+++.++++++...|++|..+.+. ++.++..|+++++.+.. .+++
T Consensus       609 ~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~~~~~d~~l~~~~~~fd~~~~~-~~~~l~~G~~l~~~~~~~~~~~  686 (1304)
T 2vsq_A          609 PAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMAFSDQDTFLSVSNYAFDAFTFD-FYASMLNAARLIIADEHTLLDT  686 (1304)
T ss_dssp             EEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSCCCTTCEEEECSCTTSTHHHHH-HHHHHTTTCEEEECCGGGTTCH
T ss_pred             eEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcCCCCCCEEEEECCccHHHHHHH-HHHHHHcCCEEEECChhhcCCH
Confidence            999999999999999999999999865 44455678889999999999999888766 89999999999998742 3589


Q ss_pred             hhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHhC-CceecccCcccccCcc
Q 014065          242 STFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFG-APVLEAYAMTEATHLM  320 (431)
Q Consensus       242 ~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~-~~i~~~yg~tE~~~~~  320 (431)
                      ..+.+.|.++++|+++++|++++.+.+...    ..++++|.+++|||+++++..+.+.+.++ ++++|.||+||++.++
T Consensus       687 ~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~----~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~  762 (1304)
T 2vsq_A          687 ERLTDLILQENVNVMFATTALFNLLTDAGE----DWMKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFA  762 (1304)
T ss_dssp             HHHHHHHHHHTCCEEEEEHHHHHHHHHHCS----HHHHTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCS
T ss_pred             HHHHHHHHHcCCcEEEccHHHHHHHHhhch----hcCCCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHh
Confidence            999999999999999999999999976532    22578999999999999999999998884 7899999999999877


Q ss_pred             cCCCCCC-CCCCCCCCccccc-cceEEEECCCCCcCCCCceeeEEEeCCccccccccCcchhhhccc-------CCceec
Q 014065          321 SSNPLPE-DGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFL-------FGWFHT  391 (431)
Q Consensus       321 ~~~~~~~-~~~~~~~~~G~~~-~~~~~i~d~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-------~g~~~T  391 (431)
                      +...... .......++|+|+ |++++|+|+++++++.|+.|||+|+|+++++||+++++.+++.|.       ++||+|
T Consensus       763 ~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrT  842 (1304)
T 2vsq_A          763 TAHVVHDLPDSISSLPIGKPISNASVYILNEQSQLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRT  842 (1304)
T ss_dssp             EEEECCCCCSSCSSCCCBEECTTEEEEEECTTSCBCCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEE
T ss_pred             eeeeccCccccCCCCCCceeeCCCEEEEECCCcCCCCCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEec
Confidence            6554321 1233456899999 899999999999999999999999999999999999999999884       249999


Q ss_pred             CceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          392 GDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       392 GD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      ||+|++++||.++|+||.||+||++|++|+|.|||.+.
T Consensus       843 GDl~~~~~dG~l~~~GR~d~qvki~G~rie~~eIE~~l  880 (1304)
T 2vsq_A          843 GDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQL  880 (1304)
T ss_dssp             EEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHH
T ss_pred             CCeEEEcCCCeEEEEcCCCCEEEECCEeeCHHHHHHHH
Confidence            99999999999999999999999999999999999863

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=100.00  E-value=2e-42  Score=328.73  Aligned_cols=252  Identities=14%  Similarity=0.107  Sum_probs=213.7

Q ss_pred             CCC-CCeEEEEeccCCCCCCCeeeechHHHHHHHHHHH---HHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEe
Q 014065          158 NDP-SDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIK---SVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTL  233 (431)
Q Consensus       158 ~~~-~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~---~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~  233 (431)
                      ..+ +++++++|||||||.||+|.++|.++...+..+.   ...++.++++++..+|+.|..+.+..++.++..|+++++
T Consensus        82 ~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~  161 (436)
T 3qov_A           82 GDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVP  161 (436)
T ss_dssp             SCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEEC
T ss_pred             CCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEe
Confidence            345 8899999999999999999999999977666553   345889999999999998777777668889999999998


Q ss_pred             CCCCCCChhhHHHHHHHhcceeeecchHHHHHHHhcccCCC-CCCCCCccEEEeccCCCcHHHHHHHHHHhCCceecccC
Q 014065          234 PAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKP-EPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYA  312 (431)
Q Consensus       234 ~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~-~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~i~~~yg  312 (431)
                      .+  .+++..+++.|+++++|+++++|+++..+++...... ...++++|.+++||+++++++.+.+.+.||+++++.||
T Consensus       162 ~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG  239 (436)
T 3qov_A          162 AA--AGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFG  239 (436)
T ss_dssp             CC--SCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEE
T ss_pred             CC--CCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCc
Confidence            77  5689999999999999999999999999988754432 22378999999999999999999999999999999999


Q ss_pred             cccccCc-ccCCCCCCCCCCCCCCccccc-cceEEEEC-CCCCcCCCCceeeEEEeCCccccccccCcchhhhcccCCce
Q 014065          313 MTEATHL-MSSNPLPEDGPHKPGSVGRPV-GQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWF  389 (431)
Q Consensus       313 ~tE~~~~-~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d-~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~  389 (431)
                      +||+++. +.....      ....++.|. +..++|+| ++|++++.|+.|||+++|.            +...+.++||
T Consensus       240 ~TE~~~~~~~~~~~------~~~g~~~~~~~~~v~i~d~~~g~~~~~g~~Gel~v~~~------------~~~~~~~~~y  301 (436)
T 3qov_A          240 MTEMNGPGVAFECQ------EQNGMHFWEDCYLVEIIDPETGEPVPEGEIGELVLTTL------------DREMMPLIRY  301 (436)
T ss_dssp             EGGGTEEEEEEECT------TCSSEEECTTTEEEEEECTTTCSBCSTTCCEEEEEEES------------SCCSSCCCSE
T ss_pred             chhhcCCeeEEecC------CCCeeEEccCceEEEEEECCCCCCCCCCCceEEEEecc------------CcCCceEEEE
Confidence            9999544 333221      112356666 78999999 7799999999999999983            3344567899


Q ss_pred             ecCceEEEcCCC------e---EEEecccccceecCCeeccccceeccc
Q 014065          390 HTGDIGYFDSDG------Y---LHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       390 ~TGD~~~~~~~g------~---l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      +|||+|+++++|      +   +++.||.||+||++|++|+|.|||.+.
T Consensus       302 ~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l  350 (436)
T 3qov_A          302 RTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKIL  350 (436)
T ss_dssp             EEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHH
T ss_pred             EcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHH
Confidence            999999999998      5   699999999999999999999999864

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}

Probab=100.00  E-value=3e-42  Score=317.37  Aligned_cols=231  Identities=19%  Similarity=0.248  Sum_probs=197.8

Q ss_pred             CCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCCCCCC
Q 014065          160 PSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRF  239 (431)
Q Consensus       160 ~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~  239 (431)
                      .+++++|+|||||||.||+|.++|+++.+++......+++.++|++++.+|++|.+|+.. ++.++..|+++++.+. ..
T Consensus        36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~-~~~~l~~g~~~~~~~~-~~  113 (358)
T 4gs5_A           36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLMM-LVRGMELDWELTVTEP-TA  113 (358)
T ss_dssp             HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHH-HHHHHHHTCEEEEECC-CS
T ss_pred             CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHHH-HHHHHHhCcEEEecCc-cc
Confidence            478899999999999999999999999999999999999999999999999999999887 7888999999988763 22


Q ss_pred             ChhhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHhCCceecccCcccccCc
Q 014065          240 SASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHL  319 (431)
Q Consensus       240 ~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~i~~~yg~tE~~~~  319 (431)
                         ..++.++++++|++.++|++++.+++....  ..+++++|.+++||+++++++.+++.+ +++++++.||+||++..
T Consensus       114 ---~~~~~i~~~~~t~~~~~P~~l~~ll~~~~~--~~~l~~lr~v~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TEt~~~  187 (358)
T 4gs5_A          114 ---NPLAGLDHADFDFVAMVPMQLQSILENSAT--SGQVDRLGKVLLGGAPVNHALAMQISD-LAMPVYQSYGMTETVSH  187 (358)
T ss_dssp             ---CTTTTCSSCCCSEEEECHHHHHHHHHCTTT--GGGGGGGCSEEECSSCCCHHHHHHHHT-CSSCEEEEEECGGGSSE
T ss_pred             ---cHHHHHHHhCCeEEEcChHHHHHhhccccc--cccCCcceEEEEcccCCCchheecccc-cCceEEeccccccccce
Confidence               335678999999999999999999887543  335789999999999999999999886 58999999999999987


Q ss_pred             ccCCCCCCCCCCCCCCccccc-cceEEEECCCCCcCCCCceeeEEEeCCccccccccCcchhhhcccCCceecCceEEEc
Q 014065          320 MSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFD  398 (431)
Q Consensus       320 ~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~  398 (431)
                      +...+.   .....+.+|.+. ++++.+.+          .|||+++|+..               .+|||+|||+|++|
T Consensus       188 ~~~~~~---~~~~~g~~~~~~pgv~~~~~~----------~Gel~~~g~~~---------------~~g~~~TGDlg~~d  239 (358)
T 4gs5_A          188 VALKAL---NGPEASELYVFLPGIQYGVDE----------RGCLHISGAVT---------------NGQTVQTNDLVEIH  239 (358)
T ss_dssp             EEEEEC---SSTTCCSCEEECTTCEEEECT----------TSEEEEESGGG---------------TTCCEEEEEEEEEC
T ss_pred             eecccc---cccccceeeccCCCeEEEecC----------cCceEEecccc---------------cCcceecCCccccc
Confidence            776654   233456788887 67776644          39999988532               25899999999999


Q ss_pred             CCCeEEEecccccceecCCeeccccceec
Q 014065          399 SDGYLHLVGRIKELINRGGNLHESISLFL  427 (431)
Q Consensus       399 ~~g~l~~~gR~~d~i~~~G~~i~~~~iE~  427 (431)
                      +|| ++++||.||+||++|++|+|.|||.
T Consensus       240 ~~g-~~~~GR~dd~Ik~~G~~v~p~eIE~  267 (358)
T 4gs5_A          240 GNA-FQWIGRADNVINSGGVKIVLDQIDQ  267 (358)
T ss_dssp             SSE-EEEEEEGGGEEEETTEEEEHHHHHH
T ss_pred             cCc-eEEcccccCeEEECCEEECHHHHHH
Confidence            999 5567999999999999999999995

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=100.00  E-value=5e-41  Score=319.72  Aligned_cols=253  Identities=15%  Similarity=0.108  Sum_probs=208.2

Q ss_pred             CCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHH---HHhcCCCCCeEEEecCh-hhHHHHHHHHHHHHhcCCEEE
Q 014065          157 TNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIK---SVYKLTESDSTVIVLPL-FHVHGMLAGLLSSFAAGAAVT  232 (431)
Q Consensus       157 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~---~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~l~~G~~~~  232 (431)
                      ...++++++++|||||||.||+|.++|.++........   ..+++.++++++..+|+ +|..++.. .+.++..|++++
T Consensus        88 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~-~~~~~~~G~~~~  166 (443)
T 2y4o_A           88 AVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGI-HYGAERLGCMVV  166 (443)
T ss_dssp             SSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHH-HHHHHHHTCEEE
T ss_pred             CCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHH-HHHHHHcCCEEE
Confidence            34568899999999999999999999999877655433   36788999999999998 45555544 788899999999


Q ss_pred             eCCCCCCChhhHHHHHHHhcceeeecchHHHHHHHhcccCCCC-CCCCCccEEEeccCCCcHHHHHHHHHHhCCceeccc
Q 014065          233 LPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPE-PVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAY  311 (431)
Q Consensus       233 ~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~-~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~i~~~y  311 (431)
                      +.+  .+++..+++.|+++++|++.++|+++..+++....... ..++++|.+++||+++++++.+.+++.+|+++++.|
T Consensus       167 ~~~--~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~Y  244 (443)
T 2y4o_A          167 PMS--GGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRVGIDALDIY  244 (443)
T ss_dssp             CCC--SCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEE
T ss_pred             ECC--CCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHhCcCEEecc
Confidence            877  56999999999999999999999999999886543221 125799999999999999999999999999999999


Q ss_pred             CcccccCc-ccCCCCCCCCCCCCCCccccc-cceEEEECC-CCCcCCCCceeeEEEeCCccccccccCcchhhhcccCCc
Q 014065          312 AMTEATHL-MSSNPLPEDGPHKPGSVGRPV-GQEIAILDE-IGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGW  388 (431)
Q Consensus       312 g~tE~~~~-~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d~-~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~  388 (431)
                      |+||+++. +..... .    ....++.|. +..++|+|+ +|++++.|+.|||++++.            +++.|.++|
T Consensus       245 G~TE~~g~~~~~~~~-~----~~~g~~~~~~~~~~~i~d~~~g~~~~~G~~Gel~v~~~------------t~~~~p~~~  307 (443)
T 2y4o_A          245 GLSEVMGPGVACECV-E----TKDGPVIWEDHFYPEIIDPVTGEVLPDGSQGELVFTSL------------TKEAMPVIR  307 (443)
T ss_dssp             EETTTTEEEEEEECT-T----TCCSEEECTTTEEEEEECTTTCCBCCTTCCEEEEEEES------------SCSSSCCSS
T ss_pred             CchhhcCCeEEeccC-C----CCCceEEccCCeEEEEEcCCCCCCCCCCCceEEEEeCC------------CcccChhhe
Confidence            99997432 332221 1    111244455 689999994 599999999999999972            334456789


Q ss_pred             eecCceEEEcCC-CeE-----EEecccccceecCCeeccccceeccc
Q 014065          389 FHTGDIGYFDSD-GYL-----HLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       389 ~~TGD~~~~~~~-g~l-----~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      |+|||+|+++++ |++     ++.||.||+||++|++|+|.|||.+.
T Consensus       308 y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l  354 (443)
T 2y4o_A          308 YRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIV  354 (443)
T ss_dssp             EEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHH
T ss_pred             eecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHH
Confidence            999999999999 986     89999999999999999999999863

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=100.00  E-value=2.6e-40  Score=314.22  Aligned_cols=252  Identities=15%  Similarity=0.114  Sum_probs=208.4

Q ss_pred             CCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHH---HHhcCCCCCeEEEecCh-hhHHHHHHHHHHHHhcCCEEEe
Q 014065          158 NDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIK---SVYKLTESDSTVIVLPL-FHVHGMLAGLLSSFAAGAAVTL  233 (431)
Q Consensus       158 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~---~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~l~~G~~~~~  233 (431)
                      ..++++++++|||||||.||+|.++|.++........   ..+++.++++++..+|+ +|..++.. .+.++..|+++++
T Consensus        87 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~G~~~~~  165 (437)
T 2y27_A           87 VPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGA-HYGAERAGLTVIP  165 (437)
T ss_dssp             SCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHH-HHHHHHTTCEEEC
T ss_pred             CChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHH-HHHHHHcCCEEEe
Confidence            4568899999999999999999999999877655433   35788999999999998 56666654 7889999999998


Q ss_pred             CCCCCCChhhHHHHHHHhcceeeecchHHHHHHHhcccCCCC-CCCCCccEEEeccCCCcHHHHHHHHHHhCCceecccC
Q 014065          234 PAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPE-PVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYA  312 (431)
Q Consensus       234 ~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~-~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~i~~~yg  312 (431)
                      .+  .+++..+++.|+++++|+++++|+++..+++....... ..++++|.+++||+++++++.+.+++.+|+++++.||
T Consensus       166 ~~--~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG  243 (437)
T 2y27_A          166 FG--GGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYG  243 (437)
T ss_dssp             CC--SCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEE
T ss_pred             CC--CCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCC
Confidence            76  56999999999999999999999999999887543221 1257999999999999999999999999999999999


Q ss_pred             ccccc-CcccCCCCCCCCCCCCCCccccc-cceEEEECC-CCCcCCCCceeeEEEeCCccccccccCcchhhhcccCCce
Q 014065          313 MTEAT-HLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDE-IGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWF  389 (431)
Q Consensus       313 ~tE~~-~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d~-~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~  389 (431)
                      +||++ ..+......     ....++.|. ++.++|+|+ +|++++.|+.|||+++|.            +++.|.++||
T Consensus       244 ~TE~~g~~~~~~~~~-----~~~g~~~~~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~------------t~~~~~~~~y  306 (437)
T 2y27_A          244 LSEVMGPGVASECVE-----TKDGPTIWEDHFYPEIIDPETGEVLPDGELGELVFTSL------------TKEALPIIRY  306 (437)
T ss_dssp             ETTTTEEEEEECCTT-----TCSSCEECTTTEEEEEECTTTCCBCCTTCCEEEEEEES------------SCSSSCCCSE
T ss_pred             chhhcCCeeEEecCC-----CCCceeEccCceEEEEEcCCCCCCCCCCCccEEEEecC------------CcCCchhhee
Confidence            99984 323332211     111245555 689999995 599999999999999972            3344567899


Q ss_pred             ecCceEEEcC-CCeE-----EEecccccceecCCeeccccceeccc
Q 014065          390 HTGDIGYFDS-DGYL-----HLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       390 ~TGD~~~~~~-~g~l-----~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      +|||+|++++ +|++     ++.||.||+||++|++|+|.|||.+.
T Consensus       307 ~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l  352 (437)
T 2y27_A          307 RTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQL  352 (437)
T ss_dssp             EEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHH
T ss_pred             ecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHH
Confidence            9999999999 6985     89999999999999999999999864

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=99.98  E-value=5.7e-32  Score=251.00  Aligned_cols=235  Identities=15%  Similarity=0.118  Sum_probs=178.2

Q ss_pred             CCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHH---HHHhcCCCCCeEEEecCh-hhHHHHHHHHHHHHhcCCEEEe
Q 014065          158 NDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNI---KSVYKLTESDSTVIVLPL-FHVHGMLAGLLSSFAAGAAVTL  233 (431)
Q Consensus       158 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~---~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~l~~G~~~~~  233 (431)
                      ..++++++++|||||||.||+|.++|.++.......   ....++.+++++++.+|+ +|..++.. .+.++..|+ +++
T Consensus        88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~-~~~~~~~G~-~v~  165 (369)
T 3hgu_A           88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAIN-KERALRLGG-MFF  165 (369)
T ss_dssp             SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHH-HHHHHHTTS-CEE
T ss_pred             CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHH-HHHHHHcCC-EEE
Confidence            467889999999999999999999999999887743   355678899999999999 99999877 556688898 566


Q ss_pred             CCCCCCChh-----------------------hHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCC
Q 014065          234 PAAGRFSAS-----------------------TFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSAS  290 (431)
Q Consensus       234 ~~~~~~~~~-----------------------~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~  290 (431)
                      +.  .+++.                       .+++.++++++|++.++|+++..+++..... ..+++++|.+++||++
T Consensus       166 ~~--~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~-~~~~~~lr~i~~gGe~  242 (369)
T 3hgu_A          166 SI--DIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVV-LQMKQSLAQITLGGTE  242 (369)
T ss_dssp             CC--CCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHH-HHHHHHCSEEEEESSC
T ss_pred             Cc--cCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhh-ccccCCeeEEEECCcc
Confidence            55  56776                       7888999999999999999999998764321 1236789999999999


Q ss_pred             CcHHHHHHHH-HHh-CCceecccCcccccCcccCCCCCCCCCCCCCCcccc------c-cceEEEECC-CCCcCCCCcee
Q 014065          291 LAPVILSRLE-EAF-GAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP------V-GQEIAILDE-IGVPQEGGAKG  360 (431)
Q Consensus       291 ~~~~~~~~~~-~~~-~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~~~G~~------~-~~~~~i~d~-~~~~~~~~~~G  360 (431)
                      +++++.+++. +.| ++++++.||+||+++++..++.        .++|+|      . +++++|+|+ +|++++.|+.|
T Consensus       243 l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~--------~~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~~G  314 (369)
T 3hgu_A          243 LNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI--------TSESQQVIYDSFSPFITYDVVDSITAQTVEYGERG  314 (369)
T ss_dssp             CCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB--------CTTCSSCEEECCTTTEEEEEECTTTCSBCCTTCEE
T ss_pred             CCHHHHHHHHHHhCCCcEEEcccCchhhhcceecccc--------ccCCCcccccCCCCCeEEEEECCCCCcCCCCCCce
Confidence            9999999999 899 8999999999999876543321        147888      7 799999997 89999999999


Q ss_pred             eEEEeCCccccccccCcchhhhcccCCceecCceEEEcCC--C-------eEEEecccccceecCCe
Q 014065          361 EVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSD--G-------YLHLVGRIKELINRGGN  418 (431)
Q Consensus       361 el~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~--g-------~l~~~gR~~d~i~~~G~  418 (431)
                      ||+|++...            ..+ --.|+|||++...+.  |       .+..++|.++..++.|.
T Consensus       315 El~vt~l~~------------~~~-l~ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~gv  368 (369)
T 3hgu_A          315 NVIVTHLSP------------WAF-YPRVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEGV  368 (369)
T ss_dssp             EEEEEEEET------------TEE-EEEEEEEEEEEEECCSTTCSSCEEEEEEECC-----------
T ss_pred             EEEEEEcCc------------ccc-cccccCCceEEEecCCCCCcCcccccceeccccCCCceeeec
Confidence            999987321            111 124889999887542  2       35567777777777663

>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*

Probab=98.94  E-value=2.6e-09  Score=101.85  Aligned_cols=128  Identities=18%  Similarity=0.237  Sum_probs=83.1

Q ss_pred             CCC---ccEEEeccCCCcHHHHHHHHHHh-CCcee-cccCcccccCcccCCCCCCCCCCCCCCccccc--c-ceEEEECC
Q 014065          278 YPK---LRFIRSCSASLAPVILSRLEEAF-GAPVL-EAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV--G-QEIAILDE  349 (431)
Q Consensus       278 ~~~---l~~i~~~g~~~~~~~~~~~~~~~-~~~i~-~~yg~tE~~~~~~~~~~~~~~~~~~~~~G~~~--~-~~~~i~d~  349 (431)
                      .|+   +..+..||-..   -...++..+ +.+++ ..|++||+-..+-..+.     ..++..+..+  + .-.+.++.
T Consensus       296 WPnl~~l~~~~~G~~~~---Y~~~l~~~~g~~p~~~~~Y~ASEg~~gi~~~p~-----~~~~~~~~~L~~~~~ffEFip~  367 (581)
T 4eql_A          296 WPNTKYIETVVTGSMGQ---YVPMLNYYCNDLPLVSTTYGSSETTFGINLDPL-----CKPEDVSYTFMPNMSYFEFIPM  367 (581)
T ss_dssp             STTCCEEEEECSGGGGG---GHHHHHHHHTTCCEECCEEECSSCEEEECSCTT-----SCGGGCCEEECTTSSEEEEEEC
T ss_pred             CCCCcEEEEEcCCChHH---HHHHHHHHcCCCccccCccccccceeeeccCCC-----CCcccCceeecCCcEEEEEEec
Confidence            577   44455566322   233444444 67777 89999995322212111     1112233332  2 33444431


Q ss_pred             C----C-----CcCCCCceeeEEEeCCccccccccCcchhhhcccCCceecCceEEEcC----CCeEEEecccccceecC
Q 014065          350 I----G-----VPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDS----DGYLHLVGRIKELINRG  416 (431)
Q Consensus       350 ~----~-----~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~----~g~l~~~gR~~d~i~~~  416 (431)
                      +    .     ..++.|+.+||++++.   .|.|.             |++||+++++.    ...+.|.||.++++++.
T Consensus       368 ~~~~~~~~v~l~eVe~G~~YelViTt~---~GL~R-------------Yr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~  431 (581)
T 4eql_A          368 DGGDKNDVVDLEDVKLGCTYEPVVTNF---AGLYR-------------MRVGDIVLVTGFYNNAPQFKFVRRENVVLSID  431 (581)
T ss_dssp             STTCCSSCEEGGGCCTTCEEEEEEECS---SSCCS-------------EECCEEEEEEEEETTEEEEEEEEETTEEECSS
T ss_pred             cccCCCcEeCHHHcCCCceEEEEEeec---cceee-------------EEcCCEEEEcccCCCCcEEEEEEecCCEEEee
Confidence            1    1     3467899999999985   35554             99999999975    45799999999999999


Q ss_pred             Ceeccccceeccc
Q 014065          417 GNLHESISLFLAK  429 (431)
Q Consensus       417 G~~i~~~~iE~a~  429 (431)
                      |+++++.+||.|-
T Consensus       432 Gekl~~~~v~~al  444 (581)
T 4eql_A          432 SDKTNEEDLFKAV  444 (581)
T ss_dssp             SCCEEHHHHHHHH
T ss_pred             eeECCHHHHHHHH
Confidence            9999999999873

>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}

Probab=98.92  E-value=2.4e-09  Score=102.23  Aligned_cols=147  Identities=20%  Similarity=0.278  Sum_probs=91.3

Q ss_pred             chHHHHHHHhcccCCC-----CCCCCCcc---EEEeccCCCcHHHHHHHHHHh-CCcee-cccCcccccCcccCCCCCCC
Q 014065          259 VPTIHQIVLDRHVAKP-----EPVYPKLR---FIRSCSASLAPVILSRLEEAF-GAPVL-EAYAMTEATHLMSSNPLPED  328 (431)
Q Consensus       259 ~p~~~~~l~~~~~~~~-----~~~~~~l~---~i~~~g~~~~~~~~~~~~~~~-~~~i~-~~yg~tE~~~~~~~~~~~~~  328 (431)
                      .|..++.+.+...+..     ....|+++   .+..||-   ..-...++..+ +.+++ ..|++||+-......+.   
T Consensus       277 ~~~la~~l~~~~~~~~~~g~i~~lWPnlk~l~~~~tG~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~gi~~~p~---  350 (609)
T 4b2g_A          277 DPELADLVAGECSKDNWEGIITRIWPNTKYLDVIVTGAM---AQYIPTLDYYSGGLPLACTMYASSECYFGLNLNPM---  350 (609)
T ss_dssp             CHHHHHHHHHHHTSSCCTTTHHHHSTTCCEEEEECSGGG---GGGHHHHHHHHTSCCEECCEEECSSCEEEECSCTT---
T ss_pred             CHHHHHHHHHHhCCCccccCHHHhCCCCcEEEEEccCCh---HHHHHHHHHHcCCCccccCcccccceeeeeecCCC---
Confidence            3455666655443321     12367755   4455553   22224444444 67777 89999996433222111   


Q ss_pred             CCCCCCCccccc--c-ceEEEEC--CC--------------CCcCCCCceeeEEEeCCccccccccCcchhhhcccCCce
Q 014065          329 GPHKPGSVGRPV--G-QEIAILD--EI--------------GVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWF  389 (431)
Q Consensus       329 ~~~~~~~~G~~~--~-~~~~i~d--~~--------------~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~  389 (431)
                        ..++..+..+  + .-.+.++  +.              -..++.|+.+||+++..   .|.|.             |
T Consensus       351 --~~p~~~~~~L~p~~~ffEFIP~~~~~~~~~~~~~~~~v~l~eVe~G~~YelViTt~---~GL~R-------------Y  412 (609)
T 4b2g_A          351 --SKPSEVSYTIMPNMAYFEFLPHEHSSIPLSRDSPPRLVDLAHVEVGKEYELVITTY---AGLYR-------------Y  412 (609)
T ss_dssp             --SCGGGCCEEECTTSCEEEEEEGGGTTSCCCSSSCCCCEEGGGCCTTCEEEEEEECT---TSCCS-------------E
T ss_pred             --CCcccCceeecCCcEEEEEEeccccccccccCCCCccccHhHcCCCCeEEEehhhh---hhhhh-------------e
Confidence              1112223322  1 3334442  21              13578899999999874   46665             9


Q ss_pred             ecCceEEEcC----CCeEEEecccccceecCCeeccccceeccc
Q 014065          390 HTGDIGYFDS----DGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       390 ~TGD~~~~~~----~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      ++||+++++.    ...+.|+||.++++++.|+++++.+||.|-
T Consensus       413 r~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~av  456 (609)
T 4b2g_A          413 RVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAV  456 (609)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHH
T ss_pred             ecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHHHH
Confidence            9999999973    468999999999999999999999999873

>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}

Probab=98.86  E-value=1.5e-09  Score=103.19  Aligned_cols=129  Identities=17%  Similarity=0.223  Sum_probs=81.8

Q ss_pred             CCCccEE--EeccCCCcHHHHHHHHHHh-CCcee-cccCcccccCcccCCCCCCCCCCCCCCccccc--c-ceEEEEC--
Q 014065          278 YPKLRFI--RSCSASLAPVILSRLEEAF-GAPVL-EAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV--G-QEIAILD--  348 (431)
Q Consensus       278 ~~~l~~i--~~~g~~~~~~~~~~~~~~~-~~~i~-~~yg~tE~~~~~~~~~~~~~~~~~~~~~G~~~--~-~~~~i~d--  348 (431)
                      .|+++.|  +.+|..  ..-...++..+ +.++. ..|++||+-..+-..+     ...++..+..+  + .-.+.+.  
T Consensus       301 WPnl~~i~~~~~G~~--~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~gi~~~p-----~~~~~~~~~~L~p~~~ffEFiP~~  373 (581)
T 4epl_A          301 FPNAKYVYGIMTGSM--EPYVPKLRHYAGDLPLVSHDYGSSEGWIAANVTP-----RLSPEEATFAVIPNLGYFEFLPVS  373 (581)
T ss_dssp             CTTCCCEEEECSGGG--GGGHHHHHHHHTTSCEEECCEEETTEEEEECCCT-----TSCTTTCCEEECTTSCEEEEEEC-
T ss_pred             CCCCceEEEEeCCCh--HHHHHHHHHHcCCCccccCceeccceeeeeecCC-----CCCccccceeecCCcEEEEEEecc
Confidence            6778633  334422  22224444444 67777 8999999643322221     11222233322  1 2233332  


Q ss_pred             CCC---------CcCCCCceeeEEEeCCccccccccCcchhhhcccCCceecCceEEEcCC----CeEEEecccccceec
Q 014065          349 EIG---------VPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSD----GYLHLVGRIKELINR  415 (431)
Q Consensus       349 ~~~---------~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~----g~l~~~gR~~d~i~~  415 (431)
                      +.+         ..++.|+.+||++++.+   |.|.             |++||+++++.-    ..+.|.||.++++++
T Consensus       374 ~~~~~~~~~v~l~eve~G~~YelviTt~~---GL~R-------------Yr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~  437 (581)
T 4epl_A          374 ETGEGEEKPVGLTQVKIGEEYEVVITNYA---GLYR-------------YRLGDVVKVIGFYNNTPQLKFICRRNLILSI  437 (581)
T ss_dssp             ------CCCEEGGGCCTTCEEEEEEESTT---SCSS-------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCS
T ss_pred             cccCCCCceeeHHHcCCCCeEEEEEeecc---ceee-------------EEcCCEEEEecccCCCcEEEEEeecCCeEEe
Confidence            211         35788999999999853   5554             999999999642    479999999999999


Q ss_pred             CCeeccccceeccc
Q 014065          416 GGNLHESISLFLAK  429 (431)
Q Consensus       416 ~G~~i~~~~iE~a~  429 (431)
                      .|+++++.+||.|-
T Consensus       438 ~Ge~~~~~~v~~al  451 (581)
T 4epl_A          438 NIDKNTERDLQLSV  451 (581)
T ss_dssp             SSCCBCHHHHHHHH
T ss_pred             eeeECCHHHHHHHH
Confidence            99999999999873

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=93.57  E-value=0.59  Score=43.40  Aligned_cols=90  Identities=16%  Similarity=0.161  Sum_probs=72.6

Q ss_pred             CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCC--cHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHhcCCceEE
Q 014065           29 FDLTYSRIHELVERAASRLVAAGINAGDVVALTFPN--TVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLL  106 (431)
Q Consensus        29 ~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n--~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i  106 (431)
                      .-+|.+.+...+..+++.+...|+.++|++...++.  ....+...++++..|+..+++++. +.+.+...+++.++.++
T Consensus       108 v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~i~~~~~t~l  186 (437)
T 2y27_A          108 VGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFGGG-QTEKQVQLIQDFRPDII  186 (437)
T ss_dssp             EEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCCSC-CHHHHHHHHHHHCCSEE
T ss_pred             EecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCCCC-CHHHHHHHHHHhCCCEE
Confidence            457999999888888888888899999999999885  344555678889999999877654 78888999999999999


Q ss_pred             EecCCchhHHHHH
Q 014065          107 LTPAEGNAAAQAA  119 (431)
Q Consensus       107 i~~~~~~~~~~~~  119 (431)
                      +..+.....+...
T Consensus       187 ~~~Ps~~~~l~~~  199 (437)
T 2y27_A          187 MVTPSYMLSIADE  199 (437)
T ss_dssp             EECHHHHHHHHHH
T ss_pred             EECHHHHHHHHHH
Confidence            9887766555443

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=93.34  E-value=0.66  Score=43.15  Aligned_cols=89  Identities=17%  Similarity=0.150  Sum_probs=72.3

Q ss_pred             CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCC--cHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHhcCCceEE
Q 014065           29 FDLTYSRIHELVERAASRLVAAGINAGDVVALTFPN--TVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLL  106 (431)
Q Consensus        29 ~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n--~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i  106 (431)
                      ..+|.+.+...+..+++.+...|+.++|++...++.  ....+...++++..|+..+++++. +.+.+...+++.++.++
T Consensus       110 v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~i~~~~~t~l  188 (443)
T 2y4o_A          110 VGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMSGG-QTEKQVQLIRDFEPKII  188 (443)
T ss_dssp             EEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCCSC-CHHHHHHHHHHHCCSEE
T ss_pred             EecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECCCC-CHHHHHHHHHHhCCcEE
Confidence            457999999888888888888899999999999886  344556678889999998887665 78888899999999999


Q ss_pred             EecCCchhHHHH
Q 014065          107 LTPAEGNAAAQA  118 (431)
Q Consensus       107 i~~~~~~~~~~~  118 (431)
                      +..+.....+..
T Consensus       189 ~~~Ps~~~~l~~  200 (443)
T 2y4o_A          189 LVTPSYMLNLID  200 (443)
T ss_dssp             EECHHHHHHHHH
T ss_pred             EECHHHHHHHHH
Confidence            988776555444

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=93.25  E-value=0.62  Score=43.24  Aligned_cols=90  Identities=13%  Similarity=0.030  Sum_probs=73.1

Q ss_pred             CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCC--cHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHhcCCceEE
Q 014065           29 FDLTYSRIHELVERAASRLVAAGINAGDVVALTFPN--TVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLL  106 (431)
Q Consensus        29 ~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n--~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i  106 (431)
                      ..+|.+.+...+..+++.+...++.++|++...++-  ....+...++++..|+..++.++. ..+.+...+++.++.++
T Consensus       104 v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~-~~~~~~~~i~~~~~t~~  182 (436)
T 3qov_A          104 IVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAAG-NSKRQIKFISDFKTTAL  182 (436)
T ss_dssp             EEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCSC-CHHHHHHHHHHHTCCEE
T ss_pred             EEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCCC-CHHHHHHHHHHHCCCEE
Confidence            458999999988888888888899999999999874  455566778899999998887654 67888899999999999


Q ss_pred             EecCCchhHHHHH
Q 014065          107 LTPAEGNAAAQAA  119 (431)
Q Consensus       107 i~~~~~~~~~~~~  119 (431)
                      +..+.....+...
T Consensus       183 ~~~P~~~~~l~~~  195 (436)
T 3qov_A          183 HAIPSYAIRLAEV  195 (436)
T ss_dssp             ECCHHHHHHHHHH
T ss_pred             EECHHHHHHHHHH
Confidence            9887765554443

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0

Probab=86.37  E-value=14  Score=34.68  Aligned_cols=85  Identities=18%  Similarity=0.073  Sum_probs=67.1

Q ss_pred             eeechHHHHHHHHHHHHH---hcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCCCCCCChhhHHHHHHHhccee
Q 014065          179 VPLTQNNLAASVSNIKSV---YKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATW  255 (431)
Q Consensus       179 v~~s~~~l~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~  255 (431)
                      ..+|...+...+..+...   .++.+++++...++-+.  .+...+++++..|+..+..+. ....+.+...+++.++..
T Consensus        30 ~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~--~~~~~~lA~~~~Ga~~vpl~~-~~~~~~l~~~l~~~~~~~  106 (509)
T 3ivr_A           30 VRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCS--EMIELIGAVALIGAILLPVNY-RLNADEIAFVLGDGAPSV  106 (509)
T ss_dssp             EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCH--HHHHHHHHHHHTTCEEEECCT-TSCHHHHHHHHHHHCEEE
T ss_pred             cEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCH--HHHHHHHHHHHhCCEEEecCC-CCCHHHHHHHHHhcCceE
Confidence            468999988776665544   47889999999988643  345558899999999987764 678889999999999999


Q ss_pred             eecchHHHHHH
Q 014065          256 YTAVPTIHQIV  266 (431)
Q Consensus       256 ~~~~p~~~~~l  266 (431)
                      ++..+.....+
T Consensus       107 vi~~~~~~~~~  117 (509)
T 3ivr_A          107 VVAGTDYRDIV  117 (509)
T ss_dssp             EEECSTTHHHH
T ss_pred             EEECcchhhhH
Confidence            99988776653

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=84.71  E-value=8.1  Score=36.31  Aligned_cols=96  Identities=6%  Similarity=-0.021  Sum_probs=71.1

Q ss_pred             cCCcceEEecC-C-------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCc-HHHHHHHHHHHHhCcEEEecCC
Q 014065           17 FSSKRALSVSG-K-------FDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNT-VEFVIMFLAVIRARATAAPLNA   87 (431)
Q Consensus        17 ~p~~~a~~~~~-~-------~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~-~~~~~~~lA~~~~G~~~v~l~~   87 (431)
                      .++.+|++... |       ..+|.+.+...+..+...   .++.++|++...+|-. .-.+..+++++..|+..+..+ 
T Consensus       161 ~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~-  236 (501)
T 3ipl_A          161 NLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKES---LGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVD-  236 (501)
T ss_dssp             CTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHH---TCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-
T ss_pred             CCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHh---hCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCC-
Confidence            35677776532 1       458999888777665544   4889999999988874 334445788889999988775 


Q ss_pred             CCCHHHHHHHHhcCCceEEEecCCchhHH
Q 014065           88 AYTPDEFEFYLSDSESKLLLTPAEGNAAA  116 (431)
Q Consensus        88 ~~~~~~l~~~l~~~~~~~ii~~~~~~~~~  116 (431)
                      ..+.+.+...+++.++.++...+.....+
T Consensus       237 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l  265 (501)
T 3ipl_A          237 KFNAEQILTMIKNERITHISLVPQTLNWL  265 (501)
T ss_dssp             SCCHHHHHHHHHHSCCCEEEECHHHHHHH
T ss_pred             CCCHHHHHHHHHHcCCcEEEchHHHHHHH
Confidence            46788999999999999999877654443

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A

Probab=84.61  E-value=6.7  Score=37.46  Aligned_cols=88  Identities=15%  Similarity=0.107  Sum_probs=69.0

Q ss_pred             eeechHHHHHHHHHHHH---HhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCCCCCCChhhHHHHHHHhccee
Q 014065          179 VPLTQNNLAASVSNIKS---VYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATW  255 (431)
Q Consensus       179 v~~s~~~l~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~  255 (431)
                      ..+|...+...+..+..   ..++.++|++...++-+.  .+...+++++..|+..+..+. .....++...++..+++.
T Consensus        49 ~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~--e~~~~~lA~~~~Gav~vpl~~-~~~~~~l~~~l~~~~~~~  125 (550)
T 3rix_A           49 VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSL--QFFMPVLGALFIGVAVAPAND-IYNERELLNSMNISQPTV  125 (550)
T ss_dssp             CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCT--TTHHHHHHHHHHTCEEEECCT-TCCHHHHHHHHHHHCCSE
T ss_pred             cEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcc--cHHHHHHHHHHcCCEEeecCC-cCCHHHHHHHHHhcCCeE
Confidence            36899988776665544   448999999999988543  345558889999999987654 678899999999999999


Q ss_pred             eecchHHHHHHHhc
Q 014065          256 YTAVPTIHQIVLDR  269 (431)
Q Consensus       256 ~~~~p~~~~~l~~~  269 (431)
                      ++..+.....+...
T Consensus       126 vi~~~~~~~~~~~~  139 (550)
T 3rix_A          126 VFVSKKGLQKILNV  139 (550)
T ss_dssp             EEECGGGHHHHHHH
T ss_pred             EEEcHHHHHHHHHH
Confidence            99998877776544

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*

Probab=84.58  E-value=24  Score=33.50  Aligned_cols=87  Identities=10%  Similarity=0.006  Sum_probs=67.1

Q ss_pred             eeeechHHHHHHHHHHHH---HhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCCCCCCChhhHHHHHHHhcce
Q 014065          178 GVPLTQNNLAASVSNIKS---VYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNAT  254 (431)
Q Consensus       178 ~v~~s~~~l~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t  254 (431)
                      ...+|...+...+..+..   ..++.++|++...++-+.  .+...+++++..|+..+..+. .....++...+++.+++
T Consensus        45 ~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~--e~~~~~lA~~~~Gav~vpl~~-~~~~~~l~~~l~~~~~~  121 (541)
T 1v25_A           45 VHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHF--RHLEAYFAVPGMGAVLHTANP-RLSPKEIAYILNHAEDK  121 (541)
T ss_dssp             EEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSH--HHHHHHHHHHHTTCEEEECCT-TSCHHHHHHHHHHHTCS
T ss_pred             CceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcH--HHHHHHHHHHhcCcEEEecCc-ccCHHHHHHHHHhCCCc
Confidence            356899988776665544   457899999999988543  345558889999999987664 67888999999999999


Q ss_pred             eeecchHHHHHHH
Q 014065          255 WYTAVPTIHQIVL  267 (431)
Q Consensus       255 ~~~~~p~~~~~l~  267 (431)
                      .++..+.....+.
T Consensus       122 ~vi~~~~~~~~~~  134 (541)
T 1v25_A          122 VLLFDPNLLPLVE  134 (541)
T ss_dssp             EEEECGGGHHHHH
T ss_pred             EEEEChhHHHHHH
Confidence            9999887665543

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*

Probab=83.95  E-value=25  Score=33.65  Aligned_cols=102  Identities=18%  Similarity=0.158  Sum_probs=73.3

Q ss_pred             CCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHH---h-cCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeC
Q 014065          159 DPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSV---Y-KLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLP  234 (431)
Q Consensus       159 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~-~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~  234 (431)
                      .++.++++....  .|  ....+|...+...+..+...   . ++.++|++...++-+.  .++..+++++..|+..+..
T Consensus        56 ~p~~~al~~~~~--~g--~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~--e~~~~~lA~~~~Ga~~vpl  129 (570)
T 3c5e_A           56 RPPSPALWWVNG--KG--KELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVP--EWWLVILGCIRAGLIFMPG  129 (570)
T ss_dssp             SCCCEEEEEECS--SS--CEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCH--HHHHHHHHHHHHTCEEEEC
T ss_pred             CCCceEEEEEcC--CC--ceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCH--HHHHHHHHHHHcCeEEEec
Confidence            456667654321  11  23578999988776655543   3 7889999999888543  3455588899999998876


Q ss_pred             CCCCCChhhHHHHHHHhcceeeecchHHHHHHH
Q 014065          235 AAGRFSASTFWQDMIKYNATWYTAVPTIHQIVL  267 (431)
Q Consensus       235 ~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~  267 (431)
                      +. .+...++...+++.++..++..+.....+.
T Consensus       130 ~~-~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~  161 (570)
T 3c5e_A          130 TI-QMKSTDILYRLQMSKAKAIVAGDEVIQEVD  161 (570)
T ss_dssp             CT-TCCHHHHHHHHHHHTCSEEEEETTTHHHHH
T ss_pred             CC-CCCHHHHHHHHHhcCCeEEEechHHHHHHH
Confidence            64 678889999999999999998877665543

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*

Probab=83.67  E-value=12  Score=35.57  Aligned_cols=98  Identities=13%  Similarity=0.120  Sum_probs=71.8

Q ss_pred             CCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHH---HhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCC
Q 014065          159 DPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKS---VYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPA  235 (431)
Q Consensus       159 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~  235 (431)
                      .++.++++...   +|    -.+|...+...+..+..   ..++.++|++...++-+.  .++..+++++..|+..+..+
T Consensus        35 ~p~~~a~~~~~---~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~--~~~~~~la~~~~Gav~vpl~  105 (536)
T 3ni2_A           35 HSSKPCLINGA---NG----DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSP--EFVLAFLGASHRGAIITAAN  105 (536)
T ss_dssp             STTSEEEEETT---TC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSH--HHHHHHHHHHHHTCEEEECC
T ss_pred             CCCceEEEECC---CC----CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcH--HHHHHHHHHHHhCCEEeccC
Confidence            45666665322   22    35899988776665544   457899999999888643  34555889999999988766


Q ss_pred             CCCCChhhHHHHHHHhcceeeecchHHHHHH
Q 014065          236 AGRFSASTFWQDMIKYNATWYTAVPTIHQIV  266 (431)
Q Consensus       236 ~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l  266 (431)
                      . .....++...+++.++..++..+.....+
T Consensus       106 ~-~~~~~~l~~~l~~~~~~~~i~~~~~~~~~  135 (536)
T 3ni2_A          106 P-FSTPAELAKHAKASRAKLLITQACYYEKV  135 (536)
T ss_dssp             T-TCCHHHHHHHHHHHTEEEEEECGGGTHHH
T ss_pred             C-CCCHHHHHHHHHhcCCEEEEEChHHHHHH
Confidence            4 67889999999999999999887655544

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}

Probab=83.17  E-value=18  Score=34.35  Aligned_cols=104  Identities=6%  Similarity=-0.010  Sum_probs=73.7

Q ss_pred             CCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHH---HhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCCC
Q 014065          160 PSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKS---VYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAA  236 (431)
Q Consensus       160 ~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~  236 (431)
                      ++.++++....+.. .-..-.+|...+...+..+..   ..++.++|++...++-+.  .+...+++++..|+..+..+.
T Consensus        33 p~~~A~~~~~~~~~-~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~--~~~~~~lA~~~~G~~~vpl~~  109 (549)
T 3g7s_A           33 GEKTAIISAEPKFP-SEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSI--DYVMTIYALWRVAATPVPINP  109 (549)
T ss_dssp             TTSEEEEEESSCCC-CSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSH--HHHHHHHHHHHTTCEEEECCT
T ss_pred             CCceEEEeCCCccc-ccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCH--HHHHHHHHHHHhCCEEEccCC
Confidence            56666655432111 111246888888777665544   447899999999988643  345558899999999987764


Q ss_pred             CCCChhhHHHHHHHhcceeeecchHHHHHHH
Q 014065          237 GRFSASTFWQDMIKYNATWYTAVPTIHQIVL  267 (431)
Q Consensus       237 ~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~  267 (431)
                       ......+...+++.+++.++..+.....+.
T Consensus       110 -~~~~~~l~~il~~~~~~~~i~~~~~~~~~~  139 (549)
T 3g7s_A          110 -MYKSFELEHILNDSEATTLVVHSMLYENFK  139 (549)
T ss_dssp             -TCCHHHHHHHHHHTTCSEEEEEGGGHHHHH
T ss_pred             -CCCHHHHHHHHHhcCCCEEEEChHHHHHHH
Confidence             678889999999999999998877665543

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=81.95  E-value=3.5  Score=37.00  Aligned_cols=82  Identities=12%  Similarity=0.056  Sum_probs=59.9

Q ss_pred             CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCC--cHHHHHHHHHHHHhCcEEEecCCCCCHH--------------
Q 014065           29 FDLTYSRIHELVERAASRLVAAGINAGDVVALTFPN--TVEFVIMFLAVIRARATAAPLNAAYTPD--------------   92 (431)
Q Consensus        29 ~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n--~~~~~~~~lA~~~~G~~~v~l~~~~~~~--------------   92 (431)
                      .-+|.+.+...+..+++.+...|+.++|++...+|-  ..-.+...++++..|+.+++.  ..+..              
T Consensus       109 v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~--~~dp~~~~~~~~~~~~~~~  186 (369)
T 3hgu_A          109 VVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSI--DIDPRWVKRSLSEGDTATV  186 (369)
T ss_dssp             EEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECC--CCCHHHHHHHHHTTCHHHH
T ss_pred             EEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECc--cCChHHHHHhhcccchhhh
Confidence            457899998888877777777899999999999886  334445556668899955543  33444              


Q ss_pred             ---------HHHHHHhcCCceEEEecCCc
Q 014065           93 ---------EFEFYLSDSESKLLLTPAEG  112 (431)
Q Consensus        93 ---------~l~~~l~~~~~~~ii~~~~~  112 (431)
                               .+...+++.++.+++..+..
T Consensus       187 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~  215 (369)
T 3hgu_A          187 RKYTHHLVDQVQNTLMNQDIRFLVTTPPV  215 (369)
T ss_dssp             HHHHHHHHHHHHHHHHHSCEEEEEECHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEeCHHH
Confidence                     56668888899988876653

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}

Probab=80.68  E-value=7.9  Score=34.58  Aligned_cols=96  Identities=5%  Similarity=-0.002  Sum_probs=66.2

Q ss_pred             HHhcCCcceEEecC--------CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcH-HHHHHHHHHHHhCcEEEe
Q 014065           14 IDQFSSKRALSVSG--------KFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTV-EFVIMFLAVIRARATAAP   84 (431)
Q Consensus        14 a~~~p~~~a~~~~~--------~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~-~~~~~~lA~~~~G~~~v~   84 (431)
                      .+.+.|.+|++...        +..+|++.+...+..++..   .+++++|++...+|-+. ..+..++..+..|+..+.
T Consensus        32 ~~w~~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~  108 (358)
T 4gs5_A           32 EKWLGGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKA---LSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTV  108 (358)
T ss_dssp             HHHHHTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEE
T ss_pred             hccCCCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHH---hCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEe
Confidence            34467888887532        2568999988777666554   48899999999888753 344556667778888777


Q ss_pred             cCCCCCHHHHHHHHhcCCceEEEecCCchhH
Q 014065           85 LNAAYTPDEFEFYLSDSESKLLLTPAEGNAA  115 (431)
Q Consensus        85 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~  115 (431)
                      .++...   ....+++.++.++...+.....
T Consensus       109 ~~~~~~---~~~~i~~~~~t~~~~~P~~l~~  136 (358)
T 4gs5_A          109 TEPTAN---PLAGLDHADFDFVAMVPMQLQS  136 (358)
T ss_dssp             ECCCSC---TTTTCSSCCCSEEEECHHHHHH
T ss_pred             cCcccc---HHHHHHHhCCeEEEcChHHHHH
Confidence            765533   2456788888888887654433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	431
d1pg4a_	643	e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en	1e-92
d1v25a_	534	e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0	7e-77
d1ry2a_	640	e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast	9e-75
d1lcia_	541	e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali	9e-69
d1amua_	514	e.23.1.1 (A:) Phenylalanine activating domain of g	6e-64
d1mdba_	536	e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B	1e-57
d3cw9a1	503	e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc	2e-53

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

 Score =  290 bits (744), Expect = 1e-92
 Identities = 101/418 (24%), Positives = 162/418 (38%), Gaps = 32/418 (7%)

Query: 31  LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
           ++Y  +H  V R A+ L+  GI  GDVVA+  P   E  +  LA  R  A  + +   ++
Sbjct: 104 ISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFS 163

Query: 91  PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDT 150
           P+     + DS S+L++T  EG  A ++   K N+  A         E  + L  + SD 
Sbjct: 164 PEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDI 223

Query: 151 NAISKL------------------TNDPSDVALFLHTSGTTSRPKGVPLTQ-NNLAASVS 191
           +                         +  D    L+TSG+T +PKGV  T    L  + +
Sbjct: 224 DWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAT 283

Query: 192 NIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLP--AAGRFSASTFWQDMI 249
             K V+     D       +  V G    L    A GA   +        + +   Q + 
Sbjct: 284 TFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVD 343

Query: 250 KYNATWYTAVPTIHQIVLDRHVAKPEPV-YPKLRFIRSCSASLAPVILSRLEEAFG---A 305
           K+        PT  + ++       E      LR + S    + P       +  G    
Sbjct: 344 KHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKC 403

Query: 306 PVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCI 364
           PV++ +  TE    M + PLP     K GS  RP  G + A++D  G PQEG  +G + I
Sbjct: 404 PVVDTWWQTETGGFMIT-PLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVI 462

Query: 365 RG--PNVTKGYKNNPEANKSAFLF---GWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
               P   +    + E  +  +       + +GD    D DGY  + GR+ +++N  G
Sbjct: 463 TDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSG 520

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

 Score =  246 bits (629), Expect = 7e-77
 Identities = 106/433 (24%), Positives = 179/433 (41%), Gaps = 23/433 (5%)

Query: 2   EGVTLIGLLNQVIDQFSSKRALSVSGKFD---LTYSRIHELVERAASRLVAAGINAGDVV 58
           E + L   L +    F  K  +S     +    TY+ +++   R    L A G+  GD V
Sbjct: 9   EELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRV 68

Query: 59  ALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQA 118
           A    N    +  + AV    A     N   +P E  + L+ +E K+LL         +A
Sbjct: 69  ATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEA 128

Query: 119 AASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKG 178
              +L        + +   E    LA+ E+       +           +T+GTT  PKG
Sbjct: 129 IRGELKTVQHFVVMDEKAPEGY--LAYEEALGEEADPVRVPERAACGMAYTTGTTGLPKG 186

Query: 179 VPLTQNNLA--ASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAA 236
           V  +   L   +  +++     L+E D  + V+P+FHV+       ++      V     
Sbjct: 187 VVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPG-- 244

Query: 237 GRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVIL 296
            R   ++  +       T+   VPT+   + D   +        LR +    ++    ++
Sbjct: 245 PRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHR-LKTLRRLVVGGSAAPRSLI 303

Query: 297 SRLEEAFGAPVLEAYAMTEATHLMSSNPL--------PEDGPHKPGSVGRPV-GQEIAIL 347
           +R  E  G  V + Y +TE + ++  N +         E+        G P+    + + 
Sbjct: 304 ARF-ERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVA 362

Query: 348 DEIG--VPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF-GWFHTGDIGYFDSDGYLH 404
           DE G  VP++G A GEV ++GP +T GY  N EA +SA    G+F TGDI  +D +GY+ 
Sbjct: 363 DEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVE 422

Query: 405 LVGRIKELINRGG 417
           +  R+K+LI  GG
Sbjct: 423 IKDRLKDLIKSGG 435

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  243 bits (621), Expect = 9e-75
 Identities = 87/421 (20%), Positives = 164/421 (38%), Gaps = 33/421 (7%)

Query: 31  LTYSRIHELVERAASRLVAA-GINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAY 89
           +TY  + E V + A  L  + G+  GD VA+  P   E +I  LA+ R  A  + + A +
Sbjct: 91  ITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGF 150

Query: 90  TPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESD 149
           + +     ++D +SK+++T  E N   +   +K  +  A          L     ++ S 
Sbjct: 151 SSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSV 210

Query: 150 TNAISKLT-----------------NDPSDVALFLHTSGTTSRPKGVPLT-QNNLAASVS 191
                +                    D  D    L+TSG+T  PKGV  +    L  ++ 
Sbjct: 211 AFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALL 270

Query: 192 NIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTL--PAAGRFSASTFWQDMI 249
            ++  +   + D       +  + G    +      G A  +        + S +W  + 
Sbjct: 271 TMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIID 330

Query: 250 KYNATWYTAVPTIHQIVLDRHVAKPEP-VYPKLRFIRSCSASLAPVILSRLEEAFG---A 305
           ++  T +   PT  +++     +  E      LR + S    +A  +     E  G    
Sbjct: 331 EHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEI 390

Query: 306 PVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIG--VPQEGGAKGEV 362
           P+++ Y  TE+   + +       P KPGS   P  G +  +LD           A+G +
Sbjct: 391 PIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVL 450

Query: 363 CIRG--PNVTKGYKNNPEANKSAFL---FGWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
            ++   P+  +    N +     +L    G++ TGD    D DGY+ ++GR+ +++N  G
Sbjct: 451 AVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSG 510

Query: 418 N 418
           +
Sbjct: 511 H 511

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

 Score =  225 bits (574), Expect = 9e-69
 Identities = 100/437 (22%), Positives = 178/437 (40%), Gaps = 27/437 (6%)

Query: 1   MEGVTLIGLLNQVIDQFSSKRAL----SVSGKFDLTYSRIHELVERAASRLVAAGINAGD 56
           +E  T    L++ + +++             + ++TY+   E+  R A  +   G+N   
Sbjct: 14  LEDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNH 73

Query: 57  VVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAA 116
            + +   N+++F +  L  +      AP N  Y   E    ++ S+  ++    +G    
Sbjct: 74  RIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKI 133

Query: 117 QAAASKLNISHATATL---------LDADSELTLSLAHSESDTNAISKLTNDPSDVALFL 167
                KL I      +             + +T  L    ++ + + +  +    +AL +
Sbjct: 134 LNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIM 193

Query: 168 HTSGTTSRPKGVPLTQNNLAASVSNIKSVY---KLTESDSTVIVLPLFHVHGMLAGLLSS 224
           ++SG+T  PKGV L         S+ +      ++    + + V+P  H  GM   L   
Sbjct: 194 NSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYL 253

Query: 225 FAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFI 284
                 V +    RF    F + +  Y       VPT+      +     +     L  I
Sbjct: 254 ICGFRVVLMY---RFEEELFLRSLQDYKIQSALLVPTLFSF-FAKSTLIDKYDLSNLHEI 309

Query: 285 RSCSASLAPVILSRLEEAFGAP-VLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQ 342
            S  A L+  +   + + F  P + + Y +TE T  +   P   +G  KPG+VG+ V   
Sbjct: 310 ASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITP---EGDDKPGAVGKVVPFF 366

Query: 343 EIAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF-GWFHTGDIGYFDSD 400
           E  ++D + G       +GE+C+RGP +  GY NNPEA  +     GW H+GDI Y+D D
Sbjct: 367 EAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDED 426

Query: 401 GYLHLVGRIKELINRGG 417
            +  +V R+K LI   G
Sbjct: 427 EHFFIVDRLKSLIKYKG 443

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

 Score =  212 bits (539), Expect = 6e-64
 Identities = 78/421 (18%), Positives = 159/421 (37%), Gaps = 31/421 (7%)

Query: 5   TLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPN 64
           T+  L  + + +  +  A+    +  LTY  ++    + A   +  GI    +V +    
Sbjct: 24  TIHQLFEEQVSKRPNNVAIVCENE-QLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEK 82

Query: 65  TVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLN 124
           +++  I  LAV++A     P++  Y  +  ++ L DS++++LLT                
Sbjct: 83  SIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFNGQ 142

Query: 125 ISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQN 184
           +       +       L +              +  +D+A  ++TSGTT  PKG  L   
Sbjct: 143 VEIFEEDTIKIREGTNLHVP-------------SKSTDLAYVIYTSGTTGNPKGTMLEHK 189

Query: 185 NLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTF 244
            ++      ++   +TE D       +     +    ++     +   +          F
Sbjct: 190 GISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKDTINDFVKF 249

Query: 245 WQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFG 304
            Q + +   T  T  PT    +    +         ++ + +  ++ +P ++++ +E   
Sbjct: 250 EQYINQKEITVITLPPTYVVHLDPERI-------LSIQTLITAGSATSPSLVNKWKE--K 300

Query: 305 APVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVC 363
              + AY  TE T   ++    ++       +G P+   +I I+DE    +  G  GE+C
Sbjct: 301 VTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEAGELC 360

Query: 364 IRGPNVTKGYKNNPEANKSAFLF-------GWFHTGDIGYFDSDGYLHLVGRIKELINRG 416
           I G  + +GY   PE     F+          + TGD   + SDG +  +GRI   +   
Sbjct: 361 IGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIR 420

Query: 417 G 417
           G
Sbjct: 421 G 421

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

 Score =  195 bits (497), Expect = 1e-57
 Identities = 86/419 (20%), Positives = 158/419 (37%), Gaps = 9/419 (2%)

Query: 3   GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTF 62
           G T   LL     ++  + A+   G    +Y  +    +R A+     GI   D V +  
Sbjct: 24  GETFGDLLRDRAAKYGDRIAI-TCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQL 82

Query: 63  PNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASK 122
           PN  EF  +  A+ R  A       ++   E  ++   +E+   + P   +     + ++
Sbjct: 83  PNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLAR 142

Query: 123 LNISH-ATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPL 181
              S   T   +    E    L   +  T  +       SDVA    + G+T   K +P 
Sbjct: 143 QVQSKLPTLKNIIVAGEAEEFLPLEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPR 202

Query: 182 TQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSA 241
           T ++   S+     V  L  S   +  LP+ H + + +  +          +  +   S 
Sbjct: 203 THDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYA-GGRVVLSPSPSP 261

Query: 242 STFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEE 301
              +  + +   T    VP +  +      +        L+ ++   A  +     R++ 
Sbjct: 262 DDAFPLIEREKVTITALVPPLAMV-WMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKA 320

Query: 302 AFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV--GQEIAILDEIGVPQEGGAK 359
            FG  + + + M     L++   L +       + G+P+    E  + D+     + G  
Sbjct: 321 VFGCTLQQVFGMA--EGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGET 378

Query: 360 GEVCIRGPNVTKGYKNNPEANKSAFL-FGWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
           G +  RGP   +GY    E N ++F   G++ TGDI     DGY+ + GR K+ INRGG
Sbjct: 379 GHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGG 437

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

 Score =  184 bits (466), Expect = 2e-53
 Identities = 85/415 (20%), Positives = 142/415 (34%), Gaps = 10/415 (2%)

Query: 5   TLIGLLNQVIDQFSSKRALSVSGK-FDLTYSRIHELVERAASRLVAAGINAGDVVALTFP 63
           T+  +L +   +     AL+V  +   LT++ +   VE  A+RL A G+     VA+  P
Sbjct: 3   TVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAP 62

Query: 64  NTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKL 123
           N+ + VI  LA+ R  A  A LN      E    +   E    +       A     S  
Sbjct: 63  NSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGS 122

Query: 124 NISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQ 183
                    L  D E         S    I     +P+  A   +TSGTT  PK   + Q
Sbjct: 123 GARIIFLGDLVRDGE-------PYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQ 175

Query: 184 NNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSAST 243
               + V  + +   L      V++  +   H +    +   A     T      F    
Sbjct: 176 RAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVD 235

Query: 244 FWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVY-PKLRFIRSCSASLAPVILSRLEEA 302
             Q + +   T   A PT    +          +    LR +    A++   +L  + + 
Sbjct: 236 ALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQH 295

Query: 303 FGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPVGQEIAILDEIGVPQEGGAKGEV 362
                +  Y  TEA + +     P+ G          V           +   G     +
Sbjct: 296 LPGEKVNIYGTTEAMNSLYMRQ-PKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELI 354

Query: 363 CIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
                +   GY N P+A       GW+ T D+  +  +G + ++GR+ ++I  GG
Sbjct: 355 VAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGG 409

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	431
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	100.0
d1v25a_	534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	100.0
d1ry2a_	640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	100.0
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	100.0
d1amua_	514	Phenylalanine activating domain of gramicidin synt	100.0
d1mdba_	536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	100.0
d3cw9a1	503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	100.0
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	91.9
d1v25a_	534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	87.29
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	85.97
d1amua_	514	Phenylalanine activating domain of gramicidin synt	85.09
d3cw9a1	503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	85.04
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	82.17
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	81.55
d2ayia1	406	Aminopeptidase T {Thermus thermophilus [TaxId: 274	80.78
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	80.41

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=100.00  E-value=3.6e-68  Score=524.93  Aligned_cols=423  Identities=23%  Similarity=0.321  Sum_probs=343.9

Q ss_pred             cHH-HHHHHHHHhcCCcceEEecC-----CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHh
Q 014065            5 TLI-GLLNQVIDQFSSKRALSVSG-----KFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRA   78 (431)
Q Consensus         5 tl~-~~l~~~a~~~p~~~a~~~~~-----~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~   78 (431)
                      |+. .+|+++++.+||++|+++.+     .+++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++
T Consensus        72 N~~~n~ldrh~~~~~d~~Ali~~~~~~~~~~~~TY~eL~~~v~~~A~~L~~~Gv~~Gd~V~i~~~n~~e~iv~~lA~~~~  151 (643)
T d1pg4a_          72 NLAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARI  151 (643)
T ss_dssp             CHHHHHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCCEEEEEEecCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecccchHHHHHHHHHHHh
Confidence            443 46778889999999999743     267999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEecCCCCCHHHHHHHHhcCCceEEEecCCch---------hHHHHHHHhcCcccc--cccccccchhhh-------
Q 014065           79 RATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGN---------AAAQAAASKLNISHA--TATLLDADSELT-------  140 (431)
Q Consensus        79 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~~~~~~~~~~~~~--~~~~~~~~~~~~-------  140 (431)
                      |++++|+++.++.+++.+++++++++++|+++...         ...............  .+.+........       
T Consensus       152 Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  231 (643)
T d1pg4a_         152 GAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDL  231 (643)
T ss_dssp             TCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCCCBTTEE
T ss_pred             CeEEEecCCCCCHHHHHHHHHhcCCCEEEEcchhhhhccccchhhhHHHHHhccccccceEEEEeccCCcccccccccch
Confidence            99999999999999999999999999999986521         222222221111110  111111000000       


Q ss_pred             hhhccccccccccccCCCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHH-HHHHHhcCCCCCeEEEecChhhHHHHHH
Q 014065          141 LSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVS-NIKSVYKLTESDSTVIVLPLFHVHGMLA  219 (431)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~  219 (431)
                      ...................++++++|+|||||||.||+|+++|.+++.... .....+++.++|++++.+|++|.+++..
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~  311 (643)
T d1pg4a_         232 WWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSY  311 (643)
T ss_dssp             EHHHHHTTSCSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHH
T ss_pred             hhhhhhcccCcccCCCCCCCCCeEEEEeCCCcccCCCEEEEccHHHHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHH
Confidence            000000011122223345678999999999999999999999999765544 4556678999999999999999999988


Q ss_pred             HHHHHHhcCCEEEeCCCC--CCChhhHHHHHHHhcceeeecchHHHHHHHhcccCC-CCCCCCCccEEEeccCCCcHHHH
Q 014065          220 GLLSSFAAGAAVTLPAAG--RFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAK-PEPVYPKLRFIRSCSASLAPVIL  296 (431)
Q Consensus       220 ~~~~~l~~G~~~~~~~~~--~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~-~~~~~~~l~~i~~~g~~~~~~~~  296 (431)
                      .++.+|..|+++++.+..  .+++..+++.|+++++|+++++|++++.+++..... ...++++||.++++|++++++++
T Consensus       312 ~l~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~dl~sLr~i~~~G~pl~~~~~  391 (643)
T d1pg4a_         312 LLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAW  391 (643)
T ss_dssp             TTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHHHH
T ss_pred             HHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHHCCcEEEehHHHHHHHHhCcchhccccCCCceEEEEEEeCCCCHHHH
Confidence            788999999999986532  348899999999999999999999999998775432 34568999999999999999999


Q ss_pred             HHHHHHhC---CceecccCcccccCcccCCCCCCCCCCCCCCccccc-cceEEEECCCCCcCCCCceeeEEEeC--Cccc
Q 014065          297 SRLEEAFG---APVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRG--PNVT  370 (431)
Q Consensus       297 ~~~~~~~~---~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d~~~~~~~~~~~Gel~v~~--~~~~  370 (431)
                      +++.+.++   +++++.||+||++++++... ......+.+++|+|+ |++++|+|++|++++.|+.|||+|++  |+++
T Consensus       392 ~~~~~~~g~~~~~i~~~yG~TE~g~~~~~~~-~~~~~~~~gs~G~p~~g~~v~ivd~~g~~~~~g~~Gel~v~~~~p~~~  470 (643)
T d1pg4a_         392 EWYWKKIGKEKCPVVDTWWQTETGGFMITPL-PGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSWPGQA  470 (643)
T ss_dssp             HHHHHHTTTTCSCEEEEBCCGGGSSCSBCCC-TTTCCBCTTCCBSBCTTCCEEEECTTCCBCCSSEEEEEEECSCCTTCC
T ss_pred             HHHHHHhCCCCceEEEeechhhccceEEecC-CCccCCCCCccccccCCCEEEEECCCCCCCCCCceEEEEEecCCCccc
Confidence            99999984   77999999999998776543 233456778999999 89999999999999999999999999  5788


Q ss_pred             cccccCcchhhhcc---cCCceecCceEEEcCCCeEEEecccccceecCCeeccccceecc
Q 014065          371 KGYKNNPEANKSAF---LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLA  428 (431)
Q Consensus       371 ~gy~~~~~~~~~~~---~~g~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a  428 (431)
                      .||+++++.+.+.+   .+|||+|||+|++|+||++++.||+||+||++|++|+|.|||.+
T Consensus       471 ~~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~ik~~G~ri~p~eIE~~  531 (643)
T d1pg4a_         471 RTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESA  531 (643)
T ss_dssp             CEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHH
T ss_pred             ccccCChhhchhhhcccCCCeEEcCCEEEECCCceEEEecccccEEEECCEEECHHHHHHH
Confidence            99999988776654   46999999999999999999999999999999999999999976

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=4.2e-65  Score=496.17  Aligned_cols=422  Identities=26%  Similarity=0.343  Sum_probs=347.5

Q ss_pred             CcccHHHHHHHHHHhcCCcceEEecCC---CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHh
Q 014065            2 EGVTLIGLLNQVIDQFSSKRALSVSGK---FDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRA   78 (431)
Q Consensus         2 ~~~tl~~~l~~~a~~~p~~~a~~~~~~---~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~   78 (431)
                      +++||.++|++.|+++||++|+++.++   +++||+||+++++++|++|.++|+++||+|+++++|++++++++|||+++
T Consensus         9 ~~~~l~~~l~~~a~~~pd~~av~~~~~g~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~   88 (534)
T d1v25a_           9 EELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGM   88 (534)
T ss_dssp             CCCCTHHHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHcCCCeEEEEecCCceEEEcHHHHHHHHHHHHHHHHHCCcCCCCEEEEEeCCCHHHHHHHHHHHHh
Confidence            356899999999999999999987542   46999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCcccccccccccchhhhhhhccccccccccccCCC
Q 014065           79 RATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTN  158 (431)
Q Consensus        79 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (431)
                      |++++|++|.++.+++.++++.++++.++++....................+.............  .............
T Consensus        89 G~v~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  166 (534)
T d1v25a_          89 GAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAY--EEALGEEADPVRV  166 (534)
T ss_dssp             TCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCCTTCEEH--HHHCCSCCCCCCC
T ss_pred             CcEEEecCCCCCHHHHHHHHHhhccccccccchhhhhHHHHhhcccccceeEEeecccccccccc--ccccccccccccc
Confidence            99999999999999999999999999999999888877776655443322222111111100000  0011112233445


Q ss_pred             CCCCeEEEEeccCCCCCCCeeeechHHHHHHHHH--HHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCCC
Q 014065          159 DPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSN--IKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAA  236 (431)
Q Consensus       159 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~--~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~  236 (431)
                      .++++++++|||||||.||+|.++|.+++..+..  ..........++++..+|++|..++...+. .+..|+++++...
T Consensus       167 ~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~-~~~~g~~~v~~~~  245 (534)
T d1v25a_         167 PERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYA-ATLVGAKQVLPGP  245 (534)
T ss_dssp             CTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTHHHH-HHHHTCEEEECTT
T ss_pred             ccCCcEEEEEecCCCCCccccccccchhhhhhhhhhhhcccccccccccccccchhhhccccccce-eeeecceeeeccc
Confidence            6788999999999999999999999999866543  334456678999999999999999988554 4555555554432


Q ss_pred             CCCChhhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHhCCceecccCcccc
Q 014065          237 GRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEA  316 (431)
Q Consensus       237 ~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~i~~~yg~tE~  316 (431)
                       .+++..+...+.++++|++.++|.++..+++..... ..+++++|.+++||++++++..+.++ .++.++++.||+||+
T Consensus       246 -~~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~~~~~-~~~~~~lr~~~~gG~~~~~~~~~~~~-~~~~~i~~~yG~te~  322 (534)
T d1v25a_         246 -RLDPASLVELFDGEGVTFTAGVPTVWLALADYLEST-GHRLKTLRRLVVGGSAAPRSLIARFE-RMGVEVRQGYGLTET  322 (534)
T ss_dssp             -CCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHH-TCCCSSCCEEEECSSCCCHHHHHHHH-HTTCEEEEEEECGGG
T ss_pred             -cccccccchhhhhccccccccCchhhhhhhhhhccc-cccccceeEEEEecCCCCHHHHHHHH-HhCCeeeeecccccc
Confidence             689999999999999999999999999998875543 34589999999999999999999887 458999999999999


Q ss_pred             cCcccCCCCCCCC--------CCCCCCccccc-cceEEEECCCCCcCCC--CceeeEEEeCCccccccccCcchhhhcc-
Q 014065          317 THLMSSNPLPEDG--------PHKPGSVGRPV-GQEIAILDEIGVPQEG--GAKGEVCIRGPNVTKGYKNNPEANKSAF-  384 (431)
Q Consensus       317 ~~~~~~~~~~~~~--------~~~~~~~G~~~-~~~~~i~d~~~~~~~~--~~~Gel~v~~~~~~~gy~~~~~~~~~~~-  384 (431)
                      +..+.........        ....+++|+|+ |++++|+|++|++++.  ++.|||+++|++++.||+++++.+...+ 
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~~~  402 (534)
T d1v25a_         323 SPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALT  402 (534)
T ss_dssp             SSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEECTTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBC
T ss_pred             ccceeecccCccccccCccccccccccceeccCCcEEEEECCCCCCCCCCCCeeEEEEEcCCcccceecCChhhhhhhcc
Confidence            9887765432211        12246899999 8999999999998866  6789999999999999999999888887 


Q ss_pred             cCCceecCceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          385 LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       385 ~~g~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      .+|||+|||+|++|+||.+++.||.+|+||++|++|+|.|||.+.
T Consensus       403 ~dg~~~TGDlg~~~~~G~l~~~GR~~~~i~~~G~~v~~~eIE~~l  447 (534)
T d1v25a_         403 PDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENAL  447 (534)
T ss_dssp             TTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC-
T ss_pred             cCCCCccCceeEECCCccEEEecccccEEEECCEEECHHHHHHHH
Confidence            679999999999999999999999999999999999999999864

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.2e-65  Score=505.66  Aligned_cols=423  Identities=20%  Similarity=0.288  Sum_probs=340.8

Q ss_pred             HHHHHHHHHhcCCcceEEecC-----CCcccHHHHHHHHHHHHHHHH-HcCCCCCCEEEEECCCcHHHHHHHHHHHHhCc
Q 014065            7 IGLLNQVIDQFSSKRALSVSG-----KFDLTYSRIHELVERAASRLV-AAGINAGDVVALTFPNTVEFVIMFLAVIRARA   80 (431)
Q Consensus         7 ~~~l~~~a~~~p~~~a~~~~~-----~~~~Ty~el~~~~~~~a~~L~-~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~   80 (431)
                      ..+|+++|+++||++|+++.+     .+++||+||.++++++|++|+ ++|+++||+|+++++|++++++++|||+++|+
T Consensus        62 ~n~ldr~a~~~pd~~Ali~~~~~~g~~~~~Ty~eL~~~v~~~A~~L~~~~Gv~~Gd~V~i~~~n~~e~~~~~lA~~~~Ga  141 (640)
T d1ry2a_          62 YNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGA  141 (640)
T ss_dssp             HHHTHHHHTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhhCCCCEEEEEEecCCCCeeEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHhccCce
Confidence            678889999999999999743     268999999999999999997 57999999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHHHHhcCCceEEEecCCchh---------HHHHHHHhcCcccccccccccc-hh-------hhhhh
Q 014065           81 TAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNA---------AAQAAASKLNISHATATLLDAD-SE-------LTLSL  143 (431)
Q Consensus        81 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~  143 (431)
                      +++|+++.++.+++.++++++++++++++.....         .+.................... ..       .....
T Consensus       142 v~vpi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (640)
T d1ry2a_         142 IHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWA  221 (640)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCCCCSSSEEEHH
T ss_pred             EeecCCCCCCHHHHHHHHHhhhccccccchhhhhccchhhhHHHHHhhhhhhcccceeeeeccccccccccccccccccc
Confidence            9999999999999999999999999999875321         1111111111100000000000 00       00000


Q ss_pred             ccccccccccccCCCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHH-HHHhcCCCCCeEEEecChhhHHHHHHHHH
Q 014065          144 AHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNI-KSVYKLTESDSTVIVLPLFHVHGMLAGLL  222 (431)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  222 (431)
                      ................++++++++|||||||.||+|+++|.+++.+.... ...+++.++|++++.+|++|.+++...++
T Consensus       222 ~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~  301 (640)
T d1ry2a_         222 TEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVY  301 (640)
T ss_dssp             HHHTTSCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHHHTTH
T ss_pred             ccccccccccccCCcccccCCEEEECCCCCCCCcceeeccccHHHHHHHHHHhhcCCCcccceeeccchhhhhhHHHHHH
Confidence            00011112223334557889999999999999999999999987765544 45668899999999999999999888788


Q ss_pred             HHHhcCCEEEeCCCC--CCChhhHHHHHHHhcceeeecchHHHHHHHhcccCC-CCCCCCCccEEEeccCCCcHHHHHHH
Q 014065          223 SSFAAGAAVTLPAAG--RFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAK-PEPVYPKLRFIRSCSASLAPVILSRL  299 (431)
Q Consensus       223 ~~l~~G~~~~~~~~~--~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~-~~~~~~~l~~i~~~g~~~~~~~~~~~  299 (431)
                      .+|..|+++++.+..  ..++..+++.|+++++|+++++|++++.+.+..... ...++++||.+++||+++++++.+++
T Consensus       302 ~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~v~~gG~~l~~~~~~~~  381 (640)
T d1ry2a_         302 GPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWY  381 (640)
T ss_dssp             HHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCHHHHHHH
T ss_pred             HHHHhCCEEEEecCCCCCCCHHHHHHHHHHhCccEEEcChHHHHHHHhccccccccCCCCceEEEEEecccCcHHHHHHH
Confidence            999999998886532  237899999999999999999999999998765432 34568999999999999999999999


Q ss_pred             HHHhC---CceecccCcccccCcccCCCCCCCCCCCCCCccccc-cceEEEECCCCC-c-CCCCceeeEEEeC--Ccccc
Q 014065          300 EEAFG---APVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGV-P-QEGGAKGEVCIRG--PNVTK  371 (431)
Q Consensus       300 ~~~~~---~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d~~~~-~-~~~~~~Gel~v~~--~~~~~  371 (431)
                      .+.++   +.+++.||+||++..............+++++|+|+ |++++|+|+++. . .+.++.|||++++  |+++.
T Consensus       382 ~~~~g~~~~~i~~~yg~te~~~~~~~~~~~~~~~~~~gs~G~p~~g~~~~i~d~~~~~~~~~~~~~Gel~i~~~~p~~~~  461 (640)
T d1ry2a_         382 SEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFAR  461 (640)
T ss_dssp             HHTTSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEESSCCTTSCC
T ss_pred             HHhcCCCcceEEeeecccccccccccccCCCcCCCCCcccccccCCceEEEEeCCCCcccCCCCceEEEEEEecCCCccc
Confidence            99985   568999999999988776655555567789999999 899999997643 3 3556679999998  68999


Q ss_pred             ccccCcchhhhccc---CCceecCceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          372 GYKNNPEANKSAFL---FGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       372 gy~~~~~~~~~~~~---~g~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      ||+++++.+.+.|.   +|||+|||+|++|+||+|+++||.||+||++|++|+|.|||.+.
T Consensus       462 gy~~~~e~t~~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~~I~p~eIE~~l  522 (640)
T d1ry2a_         462 TIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAI  522 (640)
T ss_dssp             EETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHH
T ss_pred             ccccCHHHHHhhhccCCCCeEEcCCceeECCCCCEEEEEcCCCEEEECCEEECHHHHHHHH
Confidence            99999998888763   48999999999999999999999999999999999999999763

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=100.00  E-value=3.7e-64  Score=490.48  Aligned_cols=421  Identities=24%  Similarity=0.395  Sum_probs=342.2

Q ss_pred             CcccHHHHHHHHHHhc---CCcceEEecC-CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHH
Q 014065            2 EGVTLIGLLNQVIDQF---SSKRALSVSG-KFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIR   77 (431)
Q Consensus         2 ~~~tl~~~l~~~a~~~---p~~~a~~~~~-~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~   77 (431)
                      ++.|+.+.|.+.++++   |+++|+++.+ ++++||+||+++++++|++|+++|+++||+|+++++|+++++++++||++
T Consensus        15 ~~~t~~~~l~~~~~~~~~~P~~~a~~d~~~~~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns~e~~v~~lA~~~   94 (541)
T d1lcia_          15 EDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALF   94 (541)
T ss_dssp             CSSCHHHHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCSSTHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHhhCCCCCeEEEEeCCCCeEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHHHHH
Confidence            3468999999999888   6667777643 47899999999999999999999999999999999999999999999999


Q ss_pred             hCcEEEecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCcccccccccccch------hhhh-h--hccccc
Q 014065           78 ARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADS------ELTL-S--LAHSES  148 (431)
Q Consensus        78 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~-~--~~~~~~  148 (431)
                      +|++++|+++.++.+++.++++.++++++|++++..+.+.+...........+.......      .... .  ......
T Consensus        95 ~G~i~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (541)
T d1lcia_          95 IGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFN  174 (541)
T ss_dssp             HTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCBTTBEEHHHHHHHHSCTTCC
T ss_pred             hCeEEEecCCCCCHHHHHHHHHhccceEEeeeccccccchhccccccccceeeeecCCccccccchhhhhhhhhcccccc
Confidence            999999999999999999999999999999999988888777776655444433221110      0000 0  111111


Q ss_pred             cccccccCCCCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHh---cCCCCCeEEEecChhhHHHHHHHHHHHH
Q 014065          149 DTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVY---KLTESDSTVIVLPLFHVHGMLAGLLSSF  225 (431)
Q Consensus       149 ~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~~~~p~~~~~~~~~~~~~~l  225 (431)
                      .....+.....++++++++|||||||.||+|.++|.+++..........   ...++++++..+|++|..++.. .+..+
T Consensus       175 ~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~  253 (541)
T d1lcia_         175 EYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFT-TLGYL  253 (541)
T ss_dssp             TTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHH-HHHHH
T ss_pred             ccccCccccCCCCceEEEEeeccccccccccccccchhhhhhhhhhhhcccccccccccccccccccccccccc-ccccc
Confidence            2222334445678899999999999999999999999987766554433   5678999999999999998877 66677


Q ss_pred             hcCCEEEeCCCCCCChhhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHhC-
Q 014065          226 AAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFG-  304 (431)
Q Consensus       226 ~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~-  304 (431)
                      ..++..+...  ..+.......+.+++++.+.++|..+..+++..... ..++++++.+++||+++++...+++.+.++ 
T Consensus       254 ~~~~~~~~~~--~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~-~~~~~~l~~v~~gG~~~~~~~~~~~~~~~~~  330 (541)
T d1lcia_         254 ICGFRVVLMY--RFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLID-KYDLSNLHEIASGGAPLSKEVGEAVAKRFHL  330 (541)
T ss_dssp             HHTCEEEECS--SCCHHHHHHHHHHTTCSEEECCHHHHHHHHHCSCGG-GSCCTTCCEEECTTCCCCHHHHHHHHHHTTC
T ss_pred             cccccccccc--ccccchhHHHHhhhhccccccCcccccccccccccc-ccccccceEEEecccccccccccccccccCC
Confidence            7777777766  678999999999999999999999999998776553 345789999999999999999999999986 


Q ss_pred             CceecccCcccccCcccCCCCCCCCCCCCCCccccc-cceEEEEC-CCCCcCCCCceeeEEEeCCccccccccCcchhhh
Q 014065          305 APVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKS  382 (431)
Q Consensus       305 ~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d-~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~  382 (431)
                      ..+++.||+||+++.++....   .....+++|+|+ +++++|+| ++|++++.|+.|||+|+|++++.||+++++.+..
T Consensus       331 ~~~~~~YG~TE~~~~~~~~~~---~~~~~~svG~p~~~~~~~i~d~d~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~  407 (541)
T d1lcia_         331 PGIRQGYGLTETTSAILITPE---GDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNA  407 (541)
T ss_dssp             SCCBCEECCGGGSSCSEECCC---C---CCCCBEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTBHHHHHH
T ss_pred             ceeeecCCccccCceEEecCc---ccCCCCccccccCCCEEEEEECCCCcCCCCCCeEEEEEccCccCCeeCCChhhhhh
Confidence            468899999999988887654   455678999999 89999999 5599999999999999999999999998887777


Q ss_pred             cc-cCCceecCceEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          383 AF-LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       383 ~~-~~g~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      .+ .+|||+|||+|++|++|.+++.||.+|+||++|++|+|.|||.+.
T Consensus       408 ~~~~~~~~~TGDl~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~IE~~l  455 (541)
T d1lcia_         408 LIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESIL  455 (541)
T ss_dssp             HBCTTSCEEEEEEEEECTTCCEEEC-----CEEETTEEECHHHHHHHH
T ss_pred             cccCCccccCCCeeEEcCCeEEEEeeeecCEEEECCEEECHHHHHHHH
Confidence            66 468999999999999999999999999999999999999999763

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

Probab=100.00  E-value=3.1e-62  Score=473.80  Aligned_cols=402  Identities=20%  Similarity=0.297  Sum_probs=334.4

Q ss_pred             cccHHHHHHHHHHhcCCcceEEecCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcEE
Q 014065            3 GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATA   82 (431)
Q Consensus         3 ~~tl~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~   82 (431)
                      +.||.++|+++|+++||++|+++.+ +++||+||.++++++|++|+++|+++||+|+++++|+++++++++||+++|+++
T Consensus        22 ~~tl~~l~~~~a~~~Pd~~Al~~~~-~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~~~G~v~  100 (514)
T d1amua_          22 DKTIHQLFEEQVSKRPNNVAIVCEN-EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAY  100 (514)
T ss_dssp             TCCHHHHHHHHHHHCTTSEEEEETT-EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEE
T ss_pred             CCcHHHHHHHHHHhCCCCeEEEECC-eeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHHHHhCcEE
Confidence            5799999999999999999999865 799999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCcccccccccccchhhhhhhccccccccccccCCCCCCC
Q 014065           83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSD  162 (431)
Q Consensus        83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (431)
                      +|+++.++.+++.++++.++++++|++......+...    .........         ...............+..+++
T Consensus       101 v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~----~~~~~~~~~---------~~~~~~~~~~~~~~~p~~~~d  167 (514)
T d1amua_         101 VPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNI----QFNGQVEIF---------EEDTIKIREGTNLHVPSKSTD  167 (514)
T ss_dssp             EECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTS----CCCSEEEEC---------CCSTTTTSCCSCCCCCCCTTS
T ss_pred             EEeCCCCCHHHHHHHHhccCCcEEEEehhhhhhhhhh----ccccccccc---------ccccccccccccCCCCCCccc
Confidence            9999999999999999999999999988755432211    100000000         000001111122233456789


Q ss_pred             eEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCCC-CCCCh
Q 014065          163 VALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAA-GRFSA  241 (431)
Q Consensus       163 ~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~-~~~~~  241 (431)
                      +++++|||||||.||+|.++|.++...+......++..+++++++..|++|..++.. ++.++..|+++++... ...+.
T Consensus       168 ~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~  246 (514)
T d1amua_         168 LAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWE-MFMALLTGASLYIILKDTINDF  246 (514)
T ss_dssp             EEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHH-HHHHHTTTCEEEECCHHHHTCH
T ss_pred             ceEEEEccCCCCCcccccccccccccccccccccccccccccccceecccccccccc-ccccccccccccccccccccch
Confidence            999999999999999999999999999999999999999999999999999999877 7788888888887652 12467


Q ss_pred             hhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHhCCceecccCcccccCccc
Q 014065          242 STFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMS  321 (431)
Q Consensus       242 ~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~  321 (431)
                      ...++.+..+.++.+..+|......       ...++++++.++++|+++++++.+++.+  ++.+++.||+||++.+++
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~G~~~~~~~~~~~~~--~~~~~~~yG~tE~~~~~~  317 (514)
T d1amua_         247 VKFEQYINQKEITVITLPPTYVVHL-------DPERILSIQTLITAGSATSPSLVNKWKE--KVTYINAYGPTETTICAT  317 (514)
T ss_dssp             HHHHHHHHHTTCCEEEECHHHHTTS-------CTTTCCSCSEEEEESSCCCHHHHHHHTT--TSEEEEEECCGGGSSCSE
T ss_pred             hhhhhhhhhhhcccccceeeecccc-------cccccccccEEEEecccCCHHHhhhhcc--ceeEEEeeccccCceeee
Confidence            7788999999999999998764432       2345789999999999999999887655  678999999999998887


Q ss_pred             CCCCCCCCCCCCCCccccc-cceEEEECCCCCcCCCCceeeEEEeCCccccccccCcchhhhccc-------CCceecCc
Q 014065          322 SNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFL-------FGWFHTGD  393 (431)
Q Consensus       322 ~~~~~~~~~~~~~~~G~~~-~~~~~i~d~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-------~g~~~TGD  393 (431)
                      .............+.|.+. +..+.+.|+++++++.|+.|||+|+||.+++||++++..+.+.|.       +|||+|||
T Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~g~~GEl~v~~~~~~~gY~~~~~~~~~~~~~~~~~~~~~~~~TGD  397 (514)
T d1amua_         318 TWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGD  397 (514)
T ss_dssp             EEECCSSCCCSSCCCBEECTTEEEEEECTTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEE
T ss_pred             eccccccccCcccccccceeeeeEeeecccceecCCCCeeEEEEccCcccccccccccccceeeEeccccCCCceEEECC
Confidence            6655444455566788888 699999999999999999999999999999999999988777763       57999999


Q ss_pred             eEEEcCCCeEEEecccccceecCCeeccccceecc
Q 014065          394 IGYFDSDGYLHLVGRIKELINRGGNLHESISLFLA  428 (431)
Q Consensus       394 ~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a  428 (431)
                      +|++|+||+|+++||++|+||++|++|+|.+||..
T Consensus       398 ~g~~d~~G~l~i~GR~~d~i~~~G~~i~p~~IE~~  432 (514)
T d1amua_         398 QARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESI  432 (514)
T ss_dssp             EEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHH
T ss_pred             EEEECCCCcEEEEecccCEEEECCEEECHHHHHHH
Confidence            99999999999999999999999999999999964

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=8e-61  Score=466.28  Aligned_cols=417  Identities=22%  Similarity=0.295  Sum_probs=344.1

Q ss_pred             cccHHHHHHHHHHhcCCcceEEecCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcEE
Q 014065            3 GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATA   82 (431)
Q Consensus         3 ~~tl~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~   82 (431)
                      +.||.++|+++|+++||++|+++.+ +++||+||+++++++|++|++.|+++||+|+++++|++++++++|||+++|+++
T Consensus        24 ~~tl~~~l~~~a~~~pd~~Al~~~~-~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~~~~G~i~  102 (536)
T d1mdba_          24 GETFGDLLRDRAAKYGDRIAITCGN-THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALP  102 (536)
T ss_dssp             SCCHHHHHHHHHHHHTTSEEEEETT-EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEE
T ss_pred             CCCHHHHHHHHHHHCCCCeEEEECC-EeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHHHHhCcEE
Confidence            4699999999999999999999865 799999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHH-----hcCcccccccccccchhhhhhhccccccccccccCC
Q 014065           83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAAS-----KLNISHATATLLDADSELTLSLAHSESDTNAISKLT  157 (431)
Q Consensus        83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (431)
                      +|++|.++.+++.++++.++++++++++...........     ...................+..    ..........
T Consensus       103 vpl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~  178 (536)
T d1mdba_         103 VFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEFLPLED----LHTEPVKLPE  178 (536)
T ss_dssp             EECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCTTSEEGGG----CCCCCCCCCC
T ss_pred             EecCCCCCHHHHHHHHHhhccceEeccchhhhhhhhhhhhhhhhccccccceeeeeccccccchhh----cccCCcCCCc
Confidence            999999999999999999999999998753322211111     1100000000000000001111    1112223345


Q ss_pred             CCCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhcCCCCCeEEEecChhhHHHHHHHHHHH-HhcCCEEEeCCC
Q 014065          158 NDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSS-FAAGAAVTLPAA  236 (431)
Q Consensus       158 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-l~~G~~~~~~~~  236 (431)
                      ..++++++++|||||||.||+|.+||.++..++......+++.+++++++..|++|.+++...++.. +..|.+++..+ 
T Consensus       179 ~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~-  257 (536)
T d1mdba_         179 VKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSP-  257 (536)
T ss_dssp             CCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECS-
T ss_pred             cCccchHHhhhcccccccceecccccccccccccccccccccccccccccccccccccceeeccccccccccccccccC-
Confidence            6788999999999999999999999999999999999999999999999999999999876544444 44467777766 


Q ss_pred             CCCChhhHHHHHHHhcceeeecchHHHHHHHhcccCCCCCCCCCccEEEeccCCCcHHHHHHHHHHhCCceecccCcccc
Q 014065          237 GRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEA  316 (431)
Q Consensus       237 ~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~i~~~yg~tE~  316 (431)
                       .+++..+++.+++++++.+..+|..+..+....... ...+++++.+++||+++++...+++.+.++......|+.+|.
T Consensus       258 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (536)
T d1mdba_         258 -SPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSR-RDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEG  335 (536)
T ss_dssp             -SSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHC-CCCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTS
T ss_pred             -CCCHHHHHHHHhhhccccccccchhhhhhhhhcccc-ccccCcceeEEEeccccccccccchhhccCceeeeccccccc
Confidence             789999999999999999999999999987776554 344789999999999999999999999999999999998887


Q ss_pred             cCcccCCCCCCCCCCCCCCccccc-c-ceEEEECCCCCcCCCCceeeEEEeCCccccccccCcchhhhcc-cCCceecCc
Q 014065          317 THLMSSNPLPEDGPHKPGSVGRPV-G-QEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAF-LFGWFHTGD  393 (431)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~G~~~-~-~~~~i~d~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD  393 (431)
                      +........  ......+++|.|+ + ..+.+.+++|++++.++.|||+++|+.++.||+++++.+...+ .+|||+|||
T Consensus       336 ~~~~~~~~~--~~~~~~~~~g~p~~~~~~~~v~~~~g~~~~~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~tGD  413 (536)
T d1mdba_         336 LVNYTRLDD--PEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGD  413 (536)
T ss_dssp             CEEECCTTS--CHHHHHHCCCEESSTTCEEEEECTTSCBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEE
T ss_pred             ccccccccc--ccccccCCcccCCCCcceEEEEcCCCCeecccccceeecCCCccccccccccccccccccccCccccCc
Confidence            765554332  2344557899998 4 6677777889999999999999999999999999988877776 458999999


Q ss_pred             eEEEcCCCeEEEecccccceecCCeeccccceeccc
Q 014065          394 IGYFDSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       394 ~~~~~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      ++++|+||+|++.||.||+||++|++|+|.|||.+.
T Consensus       414 ~~~~~~dG~l~~~GR~~d~i~~~G~~i~p~~IE~~l  449 (536)
T d1mdba_         414 IVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHL  449 (536)
T ss_dssp             EEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHH
T ss_pred             cccccCCCceecCCCcceEEEECCEEECHHHHHHHH
Confidence            999999999999999999999999999999999763

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

Probab=100.00  E-value=6.1e-57  Score=435.12  Aligned_cols=414  Identities=21%  Similarity=0.267  Sum_probs=337.5

Q ss_pred             ccHHHHHHHHHHhcCCcceEEecC-CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcEE
Q 014065            4 VTLIGLLNQVIDQFSSKRALSVSG-KFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATA   82 (431)
Q Consensus         4 ~tl~~~l~~~a~~~p~~~a~~~~~-~~~~Ty~el~~~~~~~a~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~   82 (431)
                      .||.++|+++|+++||++|+++.+ ++++||+||+++++++|++|++.|+++||+|+++++|++++++++|||+++|+++
T Consensus         2 ~ti~~~l~~~a~~~pd~~al~~~~~~~~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~   81 (503)
T d3cw9a1           2 QTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVP   81 (503)
T ss_dssp             CCHHHHHHHHHHHSTTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEE
T ss_pred             CCHHHHHHHHHHhCCCCeEEEECCCCcEEeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHHHHHhCcEE
Confidence            489999999999999999999854 4799999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHhcCCceEEEecCCchhHHHHHHHhcCcccccccccccchhhhhhhccccccccccccCCCCCCC
Q 014065           83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSD  162 (431)
Q Consensus        83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (431)
                      +|++|.++.+++.+++++++++++|++...... ........ ....+.+.+..     ..................+++
T Consensus        82 vpi~~~~~~~~i~~~l~~~~~~~~i~~~~~~~~-~~~~~~~~-~~~~i~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  154 (503)
T d3cw9a1          82 ALLNPRLKSAELAELIKRGEMTAAVIAVGRQVA-DAIFQSGS-GARIIFLGDLV-----RDGEPYSYGPPIEDPQREPAQ  154 (503)
T ss_dssp             EEECTTSCHHHHHHHHHHTTCSEEEESSCHHHH-HHHHHTTC-CCEEEEHHHHE-----ETTEECCCSCCCCCCCCCTTS
T ss_pred             EEeCCCCCHHHHHHHHHhcCCcEEEeecchHHH-HHHhhhcc-ccccccchhhh-----hhhcccccCCccccccchhhh
Confidence            999999999999999999999999998764322 22222211 11111111100     000011112223334567789


Q ss_pred             eEEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhc--CCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCCCCCCC
Q 014065          163 VALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYK--LTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFS  240 (431)
Q Consensus       163 ~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~--~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~  240 (431)
                      +++++|||||||.||+|.++|.++...+......+.  ....++++..+|++|..+.....+.+...++.+++.+  .++
T Consensus       155 ~a~i~~TSGTTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  232 (503)
T d3cw9a1         155 PAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVE--EFR  232 (503)
T ss_dssp             EEEEEEECCSSSSCEEEEEEGGGHHHHHHHHHHTSCCCSSTTCEEEECSCTTSHHHHHTTHHHHHHTTCEEEECS--SCC
T ss_pred             hhhhcccccccccccccccccchhhhhhhhccccccccccccccccccCcccccccccccccccccccccccccc--ccC
Confidence            999999999999999999999999988888776654  3556889999999888888877888888999998887  789


Q ss_pred             hhhHHHHHHHhcceeeecchHHHHHHHhcccCC-CCCCCCCccEEEeccCCCcHHHHHHHHHHhCCceecccCcccccCc
Q 014065          241 ASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAK-PEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHL  319 (431)
Q Consensus       241 ~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~-~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~i~~~yg~tE~~~~  319 (431)
                      +..+...+.+++++.+..+|..+..+....... .....+++|.+++||++++++...++...++..+.+.||++|++..
T Consensus       233 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~yg~~e~~~~  312 (503)
T d3cw9a1         233 PVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNS  312 (503)
T ss_dssp             HHHHHHHHHHHTCCEEEECHHHHHHHHHHHHHTCTTCCCTTCCEEEECSSCCCHHHHHHHHHHCCSEEEEEEEETTTEEE
T ss_pred             hHHhhhhhhhceeeccccccccccccccccccccccccccceEEEEecccccccccccccccccccccccccccccccee
Confidence            999999999999999999999998887654432 2344789999999999999999999999999999999999999887


Q ss_pred             ccCCCCCCCCCCCCCCccccc-cceEEEECCCCCcCCCCceeeEEEeC-CccccccccCcchhhhcccCCceecCceEEE
Q 014065          320 MSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRG-PNVTKGYKNNPEANKSAFLFGWFHTGDIGYF  397 (431)
Q Consensus       320 ~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d~~~~~~~~~~~Gel~v~~-~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~  397 (431)
                      +.....   ......+.+.+. .....+.+..++.++.|+.|++.+.+ +....||++++..+.+.|.+|||+|||+|++
T Consensus       313 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~t~~~~~~g~~~TgD~g~~  389 (503)
T d3cw9a1         313 LYMRQP---KTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVW  389 (503)
T ss_dssp             EEEESC---SSSSEEBCCTTCCEEEECTTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEEEEE
T ss_pred             eeeccc---cccccccccccccceeeeeecccCcccCCCccccccccccccccccccCChhhhHHHhcCCceeccccccc
Confidence            776543   222233334444 34445556778999999999887776 5666778888888988899999999999999


Q ss_pred             cCCCeEEEecccccceecCCeeccccceeccc
Q 014065          398 DSDGYLHLVGRIKELINRGGNLHESISLFLAK  429 (431)
Q Consensus       398 ~~~g~l~~~gR~~d~i~~~G~~i~~~~iE~a~  429 (431)
                      |+||.|++.||+||+||++|++|+|.+||.+.
T Consensus       390 ~~dG~l~~~GR~~d~ik~~G~~v~~~~IE~~l  421 (503)
T d3cw9a1         390 TPEGTVRILGRVDDMIISGGENIHPSEIERVL  421 (503)
T ss_dssp             CTTSCEEEEEESSCCEEETTEEECHHHHHHHH
T ss_pred             ccCCeEEeCCCcCCeEEECCEEECHHHHHHHH
Confidence            99999999999999999999999999999753

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=91.90  E-value=0.65  Score=41.95  Aligned_cols=102  Identities=15%  Similarity=0.109  Sum_probs=76.0

Q ss_pred             eeechHHHHHHHHHHH---HHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCCCCCCChhhHHHHHHHhccee
Q 014065          179 VPLTQNNLAASVSNIK---SVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATW  255 (431)
Q Consensus       179 v~~s~~~l~~~~~~~~---~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~  255 (431)
                      ..+|+..+...+..++   ...++.++|++...++-..  .+...+++++..|+..+..+. .++.+++...++..+++.
T Consensus        46 ~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns~--e~~v~~lA~~~~G~i~vpl~~-~~~~~~l~~~l~~~~~~~  122 (541)
T d1lcia_          46 VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSL--QFFMPVLGALFIGVAVAPAND-IYNERELLNSMNISQPTV  122 (541)
T ss_dssp             CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCS--STHHHHHHHHHHTCEEEECCT-TCCHHHHHHHHHHHCCSE
T ss_pred             eEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCH--HHHHHHHHHHHhCeEEEecCC-CCCHHHHHHHHHhccceE
Confidence            4579999887766544   4457899999998887543  334558888999998887654 678999999999999999


Q ss_pred             eecchHHHHHHHhcccCCCCCCCCCccEEEecc
Q 014065          256 YTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCS  288 (431)
Q Consensus       256 ~~~~p~~~~~l~~~~~~~~~~~~~~l~~i~~~g  288 (431)
                      ++.....+..+.+....     ++.++.++...
T Consensus       123 vi~~~~~~~~~~~~~~~-----~~~~~~~~~~~  150 (541)
T d1lcia_         123 VFVSKKGLQKILNVQKK-----LPIIQKIIIMD  150 (541)
T ss_dssp             EEECGGGHHHHHHHHHH-----CTTCCEEEETT
T ss_pred             Eeeeccccccchhcccc-----ccccceeeeec
Confidence            99999888877665432     34555555543

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

Probab=87.29  E-value=7.3  Score=34.53  Aligned_cols=102  Identities=10%  Similarity=-0.012  Sum_probs=75.9

Q ss_pred             CCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHHH---HhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCC
Q 014065          159 DPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKS---VYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPA  235 (431)
Q Consensus       159 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~  235 (431)
                      .++.++++...+|.     .-.+|...+...+..+..   ..+++++|++...++-..  .++..+++++..|+..+..+
T Consensus        24 ~pd~~av~~~~~g~-----~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~n~~--e~~~~~lA~~~~G~v~vpl~   96 (534)
T d1v25a_          24 FGRKEVVSRLHTGE-----VHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHF--RHLEAYFAVPGMGAVLHTAN   96 (534)
T ss_dssp             STTCEEEEECTTSC-----EEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSH--HHHHHHHHHHHTTCEEEECC
T ss_pred             cCCCeEEEEecCCc-----eEEEcHHHHHHHHHHHHHHHHHCCcCCCCEEEEEeCCCH--HHHHHHHHHHHhCcEEEecC
Confidence            35667766555442     235788888776665544   457899999988888544  34555889999999998776


Q ss_pred             CCCCChhhHHHHHHHhcceeeecchHHHHHHHh
Q 014065          236 AGRFSASTFWQDMIKYNATWYTAVPTIHQIVLD  268 (431)
Q Consensus       236 ~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~  268 (431)
                      . .++..++...++..++..++...........
T Consensus        97 ~-~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~  128 (534)
T d1v25a_          97 P-RLSPKEIAYILNHAEDKVLLFDPNLLPLVEA  128 (534)
T ss_dssp             T-TSCHHHHHHHHHHHTCSEEEECGGGHHHHHH
T ss_pred             C-CCCHHHHHHHHHhhccccccccchhhhhHHH
Confidence            4 6788999999999999999988877766544

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=85.97  E-value=3.8  Score=37.82  Aligned_cols=96  Identities=15%  Similarity=0.185  Sum_probs=70.6

Q ss_pred             CCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHH---HHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCC
Q 014065          159 DPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIK---SVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPA  235 (431)
Q Consensus       159 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~---~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~  235 (431)
                      .++.+|++.. +..++.  .-.+|.+.|...+..++   ...|+.++|++...+|....  +...+++++..|+..+...
T Consensus        85 ~~d~~Ali~~-~~~~~~--~~~~TY~eL~~~v~~~A~~L~~~Gv~~Gd~V~i~~~n~~e--~iv~~lA~~~~Gav~v~l~  159 (643)
T d1pg4a_          85 NGDRTAIIWE-GDDTSQ--SKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPE--AAVAMLACARIGAVHSVIF  159 (643)
T ss_dssp             HTTSEEEEEE-CSSTTC--EEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHH--HHHHHHHHHHHTCEEEECC
T ss_pred             CCCCEEEEEE-ecCCCC--ceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecccchH--HHHHHHHHHHhCeEEEecC
Confidence            3567777543 333333  23688888876666544   44589999999999986543  3445888999999998766


Q ss_pred             CCCCChhhHHHHHHHhcceeeecch
Q 014065          236 AGRFSASTFWQDMIKYNATWYTAVP  260 (431)
Q Consensus       236 ~~~~~~~~~~~~i~~~~~t~~~~~p  260 (431)
                      + .+.+..+...+++.++..++...
T Consensus       160 ~-~~~~~~l~~~l~~~~~~~li~~~  183 (643)
T d1pg4a_         160 G-GFSPEAVAGCIIDSSSRLVITAD  183 (643)
T ss_dssp             T-TSCHHHHHHHHHHHTCSEEEEES
T ss_pred             C-CCCHHHHHHHHHhcCCCEEEEcc
Confidence            4 77999999999999999888653

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

Probab=85.09  E-value=5  Score=35.43  Aligned_cols=98  Identities=13%  Similarity=0.162  Sum_probs=75.5

Q ss_pred             CCCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHH---HHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCC
Q 014065          159 DPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIK---SVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPA  235 (431)
Q Consensus       159 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~---~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~  235 (431)
                      .|+.+|++.-         .-.+|...+...+..++   ...++++++++...++-...  +...+++++..|+..+..+
T Consensus        36 ~Pd~~Al~~~---------~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~~--~v~~~la~~~~G~v~v~l~  104 (514)
T d1amua_          36 RPNNVAIVCE---------NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSID--LFIGILAVLKAGGAYVPID  104 (514)
T ss_dssp             CTTSEEEEET---------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH--HHHHHHHHHHTTCEEEECC
T ss_pred             CCCCeEEEEC---------CeeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHH--HHHHHHHHHHhCcEEEEeC
Confidence            4677777631         13689999887766655   44589999999998886543  3555888999999998766


Q ss_pred             CCCCChhhHHHHHHHhcceeeecchHHHHHHHh
Q 014065          236 AGRFSASTFWQDMIKYNATWYTAVPTIHQIVLD  268 (431)
Q Consensus       236 ~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~  268 (431)
                      . .++.+++...+++.+++.++..+.....+..
T Consensus       105 ~-~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~  136 (514)
T d1amua_         105 I-EYPKERIQYILDDSQARMLLTQKHLVHLIHN  136 (514)
T ss_dssp             T-TSCHHHHHHHHHHHTCSEEEECGGGHHHHTT
T ss_pred             C-CCCHHHHHHHHhccCCcEEEEehhhhhhhhh
Confidence            4 6789999999999999999998888777654

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

Probab=85.04  E-value=2.4  Score=37.29  Aligned_cols=92  Identities=20%  Similarity=0.226  Sum_probs=67.4

Q ss_pred             CCCeEEEEeccCCCCCCCeeeechHHHHHHHHHHH---HHhcCCCCCeEEEecChhhHHHHHHHHHHHHhcCCEEEeCCC
Q 014065          160 PSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIK---SVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAA  236 (431)
Q Consensus       160 ~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~---~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~  236 (431)
                      ++.++++.-.+|       ..+|...+...+..+.   ...++++++++...++-..  .++..+++++..|+..+..++
T Consensus        16 pd~~al~~~~~~-------~~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i~~~n~~--~~~~~~lA~~~~G~v~vpi~~   86 (503)
T d3cw9a1          16 PDHCALAVPARG-------LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSA--DVVIAILALHRLGAVPALLNP   86 (503)
T ss_dssp             TTSEEEEEGGGT-------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCH--HHHHHHHHHHHHTCEEEEECT
T ss_pred             CCCeEEEECCCC-------cEEeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCH--HHHHHHHHHHHhCcEEEEeCC
Confidence            566666554443       2478888876655544   4457899999988887533  445558889999999887654


Q ss_pred             CCCChhhHHHHHHHhcceeeecchH
Q 014065          237 GRFSASTFWQDMIKYNATWYTAVPT  261 (431)
Q Consensus       237 ~~~~~~~~~~~i~~~~~t~~~~~p~  261 (431)
                       .+.+..+...+++.++..++....
T Consensus        87 -~~~~~~i~~~l~~~~~~~~i~~~~  110 (503)
T d3cw9a1          87 -RLKSAELAELIKRGEMTAAVIAVG  110 (503)
T ss_dssp             -TSCHHHHHHHHHHTTCSEEEESSC
T ss_pred             -CCCHHHHHHHHHhcCCcEEEeecc
Confidence             678899999999999998876654

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.17  E-value=6.9  Score=28.63  Aligned_cols=63  Identities=13%  Similarity=0.136  Sum_probs=42.1

Q ss_pred             HHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCc-EEEecCCCCCHHHHHHHHhcCCceEEEecCC
Q 014065           45 SRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARA-TAAPLNAAYTPDEFEFYLSDSESKLLLTPAE  111 (431)
Q Consensus        45 ~~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~-~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~  111 (431)
                      +.+++.++++||.|+|+..-..-..++++|. ..|+ .++.++.+  .+. ..+.++.+++.++...+
T Consensus        17 ~a~~~~~~~~gd~VlI~G~G~iG~~~~~~a~-~~G~~~Vi~~d~~--~~r-l~~a~~~Ga~~~~~~~~   80 (171)
T d1pl8a2          17 HACRRGGVTLGHKVLVCGAGPIGMVTLLVAK-AMGAAQVVVTDLS--ATR-LSKAKEIGADLVLQISK   80 (171)
T ss_dssp             HHHHHHTCCTTCEEEEECCSHHHHHHHHHHH-HTTCSEEEEEESC--HHH-HHHHHHTTCSEEEECSS
T ss_pred             HHHHHhCCCCCCEEEEECCCccHHHHHHHHH-HcCCceEEeccCC--HHH-HHHHHHhCCcccccccc
Confidence            4455669999999999987556666665555 5677 45555443  333 34567788888776554

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=81.55  E-value=4.7  Score=29.52  Aligned_cols=61  Identities=13%  Similarity=0.087  Sum_probs=39.7

Q ss_pred             HHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHhcCCceEEEecC
Q 014065           46 RLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPA  110 (431)
Q Consensus        46 ~L~~~gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~  110 (431)
                      .+++.++++||+|+|+..-..-.+++.+ +...|+.++.++++  .+. ..+.++.++...+...
T Consensus        18 a~~~~~~~~g~~vlV~G~G~vG~~~~~~-ak~~Ga~vi~v~~~--~~r-~~~a~~~ga~~~~~~~   78 (170)
T d1e3ja2          18 ACRRAGVQLGTTVLVIGAGPIGLVSVLA-AKAYGAFVVCTARS--PRR-LEVAKNCGADVTLVVD   78 (170)
T ss_dssp             HHHHHTCCTTCEEEEECCSHHHHHHHHH-HHHTTCEEEEEESC--HHH-HHHHHHTTCSEEEECC
T ss_pred             HHHHhCCCCCCEEEEEcccccchhhHhh-HhhhcccccccchH--HHH-HHHHHHcCCcEEEecc
Confidence            3455699999999998654455555444 46678887777543  333 4555666777666544

>d2ayia1 e.60.1.1 (A:3-408) Aminopeptidase T {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Thermophilic metalloprotease-like
superfamily: Thermophilic metalloprotease-like
family: Thermophilic metalloprotease (M29)
domain: Aminopeptidase T
species: Thermus thermophilus [TaxId: 274]

Probab=80.78  E-value=2.4  Score=36.62  Aligned_cols=50  Identities=20%  Similarity=0.268  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHHHHc--CCCCCCEEEEECCCc-HHH-HHHHHHHHHhCcEEEec
Q 014065           36 IHELVERAASRLVAA--GINAGDVVALTFPNT-VEF-VIMFLAVIRARATAAPL   85 (431)
Q Consensus        36 l~~~~~~~a~~L~~~--gl~~gd~V~i~~~n~-~~~-~~~~lA~~~~G~~~v~l   85 (431)
                      |.++.+++|..|.+.  +++|||.|.|..+.. .++ ..+.=++.++|+.++.+
T Consensus         2 ~~~~L~k~A~llV~~~l~vqkGe~VlI~a~~~~~~Lvral~e~A~~~GA~pv~v   55 (406)
T d2ayia1           2 FKRNLEKLAELAIRVGLNLEKGQEVIATAPIEAVDFVRLLAEKAYREGASLFTV   55 (406)
T ss_dssp             CHHHHHHHHHHHHHTTTCCCTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEE
T ss_pred             hHHHHHHHHHHHHHHcccCCCCCEEEEEcccchHHHHHHHHHHHHHcCCCeEEE
Confidence            456889999999986  689999999998774 333 34445678899977655

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.41  E-value=7.9  Score=28.38  Aligned_cols=56  Identities=7%  Similarity=-0.054  Sum_probs=37.9

Q ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHhcCCceEEEec
Q 014065           51 GINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTP  109 (431)
Q Consensus        51 gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~  109 (431)
                      ++++||+|+|....+.--..+...+-..|+..+.+..  +.+. ...+++.+++.++-.
T Consensus        25 ~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~--~~~~-~~~~~~~Ga~~vi~~   80 (174)
T d1yb5a2          25 CVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAG--TEEG-QKIVLQNGAHEVFNH   80 (174)
T ss_dssp             CCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEES--SHHH-HHHHHHTTCSEEEET
T ss_pred             CCCCCCEEEEEeccccccccccccccccCcccccccc--cccc-cccccccCccccccc
Confidence            7999999999997554444444444777887766543  3443 455667888888744