Citrus Sinensis ID: 014092

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-
Protein Sequence
MEIISTSWFQAISSKPPLLKRRSHNFYGAKSRSLISMPADGFPPCRSPLKYNFARGITSILYSSRRNTNFTARASTDDGNSPQTASPSSSNSQIIIISSAVTVTLAIANRVLYKLALVPMKQYPFFLAQITTFGYVVIYFSILYTRYLMGIVTDEMISLPKYRFLFIGMLEALGVASGMAAAAMLPGPAIPILSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVGVAVASGSNSGQMLSRVDFLWPSMMIASSAFQAGASIIKEFIFDDAKKCLKGKSLDIFVVNSFGSGFQALFVLLFLPFLSNLKGIPFAELPLYLKSGAGCLLNLGANTSGCNGAPLLPLLYIATNMAFNISMLRLMKISSAVVSSLVVMLSVPIAIYVLSLPLPYLPEGASLSPFFLFGSVILLLGLTLYNLPQPAKRSSKMT
Secondary Structure (PSIPRED)
ccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcEEEEEEEcccccccccccccHHHHHHHHHHHHHHHEEccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEHHHHHccccccEEccccEEEEEEccccccccccccccccccccccEEEcccccccccccccccHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHccccccEEHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccc
Coil and Loop (DISEMBL)
MEIISTSWFqaisskppllkrrshnfygaksrslismpadgfppcrsplkynfaRGITSILYSsrrntnftarastddgnspqtaspsssnsqIIIISSAVTVTLAIANRVLYKLALvpmkqypffLAQITTFGYVVIYFSILYTRYLMGIVTdemislpkYRFLFIGMLEALGVASGMAAaamlpgpaipilSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVGVAVasgsnsgqmlsrvdflwpsmmIASSAFQAGASIIKEFIFDDAkkclkgksldiFVVNSFGSGFQALFVLLFLpflsnlkgipfaelplYLKSGAgcllnlgantsgcngapllplLYIATNMAFNISMLRLMKISSAVVSSLVVMLSVPIAIYVlslplpylpegaslspffLFGSVILLLGLtlynlpqpakrsskmt
Flexible Loop (DISEMBL)
meiistswfqaisskppllkrRSHNFYGAKSRSLISMPADGFPPCRSPLKYNFARGITSILYSSRRNTNFTArastddgnspqtaspsssnsQIIIISSAVTVTLAIANRVLYKLALVPMKQYPFFLAQITTFGYVVIYFSILYTRYLMGIVTDEMISLPKYRFLFIGMLEALGVASGMAAAAMLPGPAIPILSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVGVAVASGSNSGQMLSRVDFLWPSMMIASSAFQAGASIIKEFIFDDAKKCLKGKSLDIFVVNSFGSGFQALFVLLFLPFLSNLKGIPFAELPLYLKSGAGCLLNLGANTSGCNGAPLLPLLYIATNMAFNISMLRLMKISSAVVSSLVVMLSVPIAIYVLSLPLPYLPEGASLSPFFLFGSVILLLGLTLynlpqpakrsskmt
Low Complexity Region (SEG)
MEIISTSWFQAISSKPPLLKRRSHNFYGAKSRSLISMPADGFPPCRSPLKYNFARGITSILYSSRRNTNFTARASTDDGnspqtaspsssnsqiiiissaVTVTLAIANRVLYKLALVPMKQYPFFLAQITTFGYVVIYFSILYTRYLMGIVTDEMISLPKYRFLFIGMLEalgvasgmaaaamlpgpaipilSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLvatgvgvavasgsnsgQMLSRVDFLWPSMMIASSAFQAGASIIKEFIFDDAKKCLKGKSLDIFVVNSFGSGFQALFVLLFLPFLSNLKGIPFAELPLYLKSGAGCLLNLGANTSGCNGAPLLPLLYIATNMAFNISMLRLMKIssavvsslvvmlsvPIAIYVLSLPLPYLPEGASLSPFFLFGSVILLLGLTLYNLPQPAKRSSKMT
Disordered region (IsUnstruct)
*******WF****************FY************DGFPPCRSPLKYNFARGITSILYS******************************IIIISSAVTVTLAIANRVLYKLALVPMKQYPFFLAQITTFGYVVIYFSILYTRYLMGIVTDEMISLPKYRFLFIGMLEALGVASGMAAAAMLPGPAIPILSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVGVAVASGSNSGQMLSRVDFLWPSMMIASSAFQAGASIIKEFIFDDAKKCLKGKSLDIFVVNSFGSGFQALFVLLFLPFLSNLKGIPFAELPLYLKSGAGCLLNLGANTSGCNGAPLLPLLYIATNMAFNISMLRLMKISSAVVSSLVVMLSVPIAIYVLSLPLPYLPEGASLSPFFLFGSVILLLGLTLYNL***********
Disordered Region (DISOPRED)
*EIISTSWFQAISSKPP************************************************************************SNSQIIIISSAVTVTLAIANRVLYKLALVPMKQYPFFLAQITTFGYVVIYFSILYTRYLMGIVTDEMISLPKYRFLFIGMLEALGVASGMAAAAMLPGPAIPILSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVGVAVA*************FLWPSMMIASSAFQAGASIIKEFIFDDAKKCLKGKSLDIFVVNSFGSGFQALFVLLFLPFLSNLKGIPFAELPLYLKSGAGCLLNLGANTSGCNGAPLLPLLYIATNMAFNISMLRLMKISSAVVSSLVVMLSVPIAIYVLSLPLPYLPEGASLSPFFLFGSVILLLGLTL**************
Disordered Region (DISEMBL)
MEIISTSWFQAISSKPPLLKRRSHNFYGAKSRSLISMPADGFPPCRSPLKYNFARGITSILYSSRRNTNFTARA*****************SQIIIISSAVTVTLAIANRVLYKLALVPMKQYPFFLAQITTFGYVVIYFSILYTRYLMGIVTDEMISLPKYRFLFIGMLEALGVASGMAAAAMLPGPAIPILSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVGVAVASGSNSGQMLSRVDFLWPSMMIASSAFQAGASIIKEFIFDDAKKCLKGKSLDIFVVNSFGSGFQALFVLLFLPFLSNLKGIPFAELPLYLKSGAGCLLNLGANTSGCNGAPLLPLLYIATNMAFNISMLRLMKISSAVVSSLVVMLSVPIAIYVLSLPLPYLPEGASLSPFFLFGSVILLLGLTLYNLPQ*********
Disordered Region (DISPRO)
MEIISTSWFQAISSKPPLLKRRSHNFYGAKSRSLISMPADGFPPCRSPLKYNFARGITSILYS***NTNFTAR****DGNSPQTASPSSSNSQIIIISSAVTVTLAIANRVLYKLALVPMKQYPFFLAQITTFGYVVIYFSILYTRYLMGIVTDEMISLPKYRFLFIGMLEALGVASGMAAAAMLPGPAIPILSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVGVAVASGSNSGQMLSRVDFLWPSMMIASSAFQAGASIIKEFIFDDAKKCLKGKSLDIFVVNSFGSGFQALFVLLFLPFLSNLKGIPFAELPLYLKSGAGCLLNLGANTSGCNGAPLLPLLYIATNMAFNISMLRLMKISSAVVSSLVVMLSVPIAIYVLSLPLPYLPEGASLSPFFLFGSVILLLGLTLYNLPQ*********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEIISTSWFQAISSKPPLLKRRSHNFYGAKSRSLISMPADGFPPCRSPLKYNFARGITSILYSSRRNTNFTARASTDDGNSPQTASPSSSNSQIIIISSAVTVTLAIANRVLYKLALVPMKQYPFFLAQITTFGYVVIYFSILYTRYLMGIVTDEMISLPKYRFLFIGMLEALGVASGMAAAAMLPGPAIPILSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVGVAVASGSNSGQMLSRVDFLWPSMMIASSAFQAGASIIKEFIFDDAKKCLKGKSLDIFVVNSFGSGFQALFVLLFLPFLSNLKGIPFAELPLYLKSGAGCLLNLGANTSGCNGAPLLPLLYIATNMAFNISMLRLMKISSAVVSSLVVMLSVPIAIYVLSLPLPYLPEGASLSPFFLFGSVILLLGLTLYNLPQPAKRSSKMT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	431	2.2.26 [Sep-21-2011]
Q9GSB0	473	Crt homolog 1 OS=Dictyost	yes	no	0.758	0.691	0.243	9e-17
Q550A6	484	Crt homolog 2 OS=Dictyost	no	no	0.758	0.675	0.234	3e-16
Q55C66	478	Crt homolog 3 OS=Dictyost	no	no	0.682	0.615	0.232	2e-14

>sp|Q9GSB0|CRTP1_DICDI Crt homolog 1 OS=Dictyostelium discoideum GN=crtp1 PE=2 SV=1

 Score = 88.6 bits (218), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 92/378 (24%), Positives = 168/378 (44%), Gaps = 51/378 (13%)

Query: 80  NSPQTASPSSSNSQI-IIISSAVTVTLAIANRVLYKLALVPMKQYPFFLAQITTFGYVVI 138
           N PQ    S S   I I+I   + VT  + N VL K  +     Y FFL+Q+T FGYV I
Sbjct: 36  NIPQKIKNSMSKETITILIYVVLYVTSGVINSVLLKKVMNKFTNYAFFLSQLTNFGYVPI 95

Query: 139 YFSIL-YTRYLMGIVTDEMISLPKYRFLFIGMLEALGVASGMAAAAMLPGPAIPILSQTF 197
           + ++  Y  +    +  E    P  +F  +G L+A+     +       GP   +L+Q  
Sbjct: 96  FGAVTAYKIFFTKDIPQETRDFPTRKFAIMGALDAITGFFVVIGGVSTSGPLQQLLNQAI 155

Query: 198 LVWQLGFSAVLLGKKFSVTQIAGCLLVATGVGVAVA----SGSNSGQMLSRVDFLWPSMM 253
           + + +  S + L +++S+ Q+ G L++  GV  ++      GS+ G         W    
Sbjct: 156 IPFTMIASFIFLKERYSLIQLGGALVIIGGVVTSLIPSLLGGSSGGNKP-----FWNFFY 210

Query: 254 IASSAFQAGASIIKEFIFDDAKKCLKGKSLDIFVVNSFGSGFQALFVLLFLP---FLSNL 310
           + S    A +++ K+  F           +D++ +  + S +Q++F L   P   +L   
Sbjct: 211 LLSVIPGALSNVYKDIGFQAV------ADMDVWYLQYWDSLYQSIFGLFLFPVNNWLPPP 264

Query: 311 KGIPFAELPLYLKSGAGCLLNLGA-------------------------NTSGCNGAPLL 345
             + F ++  ++K GA CL  + +                             C+ A ++
Sbjct: 265 ATVKFEQILPFMKEGAECLAGINSIIPSYINGTSSFTATSCTYAPDATITCDDCHNAWIV 324

Query: 346 PLLYIATNMAFNISMLRLMKISSAVVSSLVVMLSVPIAIYVLSLPLPYLPEGASLSPF-- 403
            +LY+  N+ +NI +L ++K + A V S+   L +P+   V S+   +   G+++SPF  
Sbjct: 325 IILYMTINIIYNIFILLVLKHAGATVYSIANTLRLPLTNIVFSI---HFIMGSAVSPFSG 381

Query: 404 -FLFGSVILLLGLTLYNL 420
             + G VI+L+GL  Y +
Sbjct: 382 LSVAGLVIILVGLGGYRV 399

May regulate endogenous transporter.
Dictyostelium discoideum (taxid: 44689)

>sp|Q550A6|CRTP2_DICDI Crt homolog 2 OS=Dictyostelium discoideum GN=crtp2 PE=3 SV=1

 Score = 86.7 bits (213), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 88/375 (23%), Positives = 169/375 (45%), Gaps = 48/375 (12%)

Query: 89  SSNSQIIIISSAVTVTLAIANRVLYKLALVPMKQYPFFLAQITTFGYVVIYFSI-LYTRY 147
           S  +  +++   + +   + N +L K  +     Y FFL Q+T +GYV I+ +I LY   
Sbjct: 54  SKQTATVLVYVVLYILSGVINSLLLKKVMNVFTNYGFFLNQLTNYGYVPIFGAIVLYKIL 113

Query: 148 LMGIVTDEMISLPKYRFLFIGMLEALGVASGMAAAAMLPGPAIPILSQTFLVWQLGFSAV 207
               +  +  S P+++F+ +G L+A+     +       GP   +L+Q+ + + +  S +
Sbjct: 114 FTNDIPKDTRSFPQWKFVIMGALDAVTGYFVVIGGIKTTGPLQQLLNQSVIPFTMLLSFI 173

Query: 208 LLGKKFSVTQIAGCLLVATGVGVAV----ASGSNSGQMLSRVDFLWPSMM--IASSAFQA 261
            L +++S+ Q+ G L++  GV V++      G+ SG ML    F   SM+    S+ ++A
Sbjct: 174 FLKERYSLIQLGGALIIIGGVVVSLIPSLTGGNTSGNMLFYNFFYLISMIPYAFSNVYKA 233

Query: 262 -GASIIKEFIFDDAKKCLKGKSLDIFVVNSFGSGFQALFVLLFLPFLSNL---KGIPFAE 317
            G S +++              +D++ +  F + +Q+L   +  P  + L     + F +
Sbjct: 234 IGFSTVED--------------MDVWYLQYFDALYQSLVGTVLFPINNWLPPPSDMKFNQ 279

Query: 318 LPLYLKSGAGCL---------------------LNLGAN--TSGCNGAPLLPLLYIATNM 354
           +   LK+G  CL                      N G N     C+GA ++ L+Y+A N+
Sbjct: 280 VIPQLKAGGKCLGGINTLIEQYNSTTGELLPTSCNYGDNLGCDNCHGAWVVVLIYMAVNV 339

Query: 355 AFNISMLRLMKISSAVVSSLVVMLSVPIAIYVLSLPLPYLPEGASLSPFFLFGSVILLLG 414
            +N+ +L ++K + A V S+   L +P+     S       +    S   + G  I+LLG
Sbjct: 340 LYNVFILLVLKHAGATVFSIANTLRLPLTNIAFSFKFIMGSDSNPFSGLSVAGLCIILLG 399

Query: 415 LTLYNLPQPAKRSSK 429
           L  Y +    K+  +
Sbjct: 400 LGGYRVGSMIKQKKE 414

May regulate endogenous transporter.

Dictyostelium discoideum (taxid: 44689)

>sp|Q55C66|CRTP3_DICDI Crt homolog 3 OS=Dictyostelium discoideum GN=crtp3 PE=3 SV=1

 Score = 80.9 bits (198), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 79/340 (23%), Positives = 156/340 (45%), Gaps = 46/340 (13%)

Query: 95  IIISSAVTVTLAIANRVLYKLALVPMKQYPFFLAQITTFGYVVIYF-SILYTRYLMGIVT 153
           I+I   + +   + N VL K  ++    Y FFL+QIT +GY+ I+  ++ Y  Y    V 
Sbjct: 55  ILIYVLLYIISGVINVVLLKKLMIKFVNYGFFLSQITNYGYLPIFLVAMWYKMYCTSDVP 114

Query: 154 DEMISLPKYRFLFIGMLEALGVASGMAAAAMLPGPAIPILSQTFLVWQLGFSAVLLGKKF 213
            E  + P+Y+F+ +G+L+A+     +       GP   +L+Q  + + +  S + L +++
Sbjct: 115 KETRNFPQYKFVIMGLLDAINGFFVVIGGVSTSGPLQQLLNQAIIPFTMIASFIFLRERY 174

Query: 214 SVTQIAGCLLVATGVGV----AVASGSNSGQMLSRVDFLWPSMMIASSAFQAGASIIKEF 269
           S+ Q+ G  ++  GV V    ++  GS+ G +L    F   S++       A +++ K+ 
Sbjct: 175 SLFQLGGAAVILGGVIVSLIPSLVGGSSGGNILFYNFFYLISVIPG-----ALSNVYKDI 229

Query: 270 IFDDAKKCLKGKSLDIFVVNSFGSGFQALFVLLFLPFLSNL---KGIPFAELPLYLKSGA 326
            F       +   +D++ +  +   +Q+LF  +  P  + L     I F E+   ++ GA
Sbjct: 230 AF-------QSIDMDVWYLQFWDCLYQSLFGSILFPVNNWLPPPATIKFTEIIPSMRDGA 282

Query: 327 GCL-----------------------LNLGANTSGCNGAPLLPLLYIATNMAFNISMLRL 363
            CL                       +N       C+   ++ L+Y+  N+A+NI +L +
Sbjct: 283 LCLGGKNTILPIFNGTTSTLAFGSCGINDNFVCDDCHNTWIIVLIYMTVNIAYNIFILLV 342

Query: 364 MKISSAVVSSLVVMLSVPIAIYVLSLPLPYLPEGASLSPF 403
           +K + A V S+   + +P+     S+   +   GA+ +PF
Sbjct: 343 LKHAGATVYSIANTVILPLTNIFFSI---HFIMGAATTPF 379

May regulate endogenous transporter.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	431
255572868	429	conserved hypothetical protein [Ricinus	0.895	0.899	0.702	1e-142
363818123	408	uncharacterized protein LOC100787260 [Gl	0.781	0.825	0.694	1e-125
225459052	422	PREDICTED: crt homolog 1 [Vitis vinifera	0.948	0.969	0.653	1e-125
449469797	449	PREDICTED: crt homolog 1-like [Cucumis s	0.837	0.804	0.676	1e-125
356508047	406	PREDICTED: crt homolog 1-like [Glycine m	0.763	0.810	0.708	1e-124
30686536	431	CRT (chloroquine-resistance transporter)	0.909	0.909	0.621	1e-124
297803666	426	hypothetical protein ARALYDRAFT_492400 [	0.916	0.927	0.620	1e-122
223946557	344	unknown [Zea mays] gi|413942003|gb|AFW74	0.744	0.933	0.660	1e-118
226528711	344	uncharacterized protein LOC100277036 [Ze	0.744	0.933	0.660	1e-118
218186938	343	hypothetical protein OsI_38489 [Oryza sa	0.749	0.941	0.671	1e-113

>gi|255572868|ref|XP_002527366.1| conserved hypothetical protein [Ricinus communis] gi|223533285|gb|EEF35038.1| conserved hypothetical protein [Ricinus communis]

 Score =  509 bits (1312), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 278/396 (70%), Positives = 328/396 (82%), Gaps = 10/396 (2%)

Query: 42  FPPCRSPLKYNFAR---GITSILYSS-RRNTNFTARASTD----DGNSPQTASPSSSNSQ 93
           FP  + PL Y++ +   G T   + +  +N NFT RAS+         P     ++SN++
Sbjct: 36  FP--KPPLSYSYPKVINGDTHFHHKNLDKNANFTVRASSKAPTPTPTPPPLPQVTTSNNK 93

Query: 94  IIIISSAVTVTLAIANRVLYKLALVPMKQYPFFLAQITTFGYVVIYFSILYTRYLMGIVT 153
           +IIISSA+TV LAIANRVLYKLALVPMK+YPFFLAQ  TFGYVVIYFSILY RY  GIVT
Sbjct: 94  LIIISSAITVALAIANRVLYKLALVPMKRYPFFLAQFITFGYVVIYFSILYVRYRAGIVT 153

Query: 154 DEMISLPKYRFLFIGMLEALGVASGMAAAAMLPGPAIPILSQTFLVWQLGFSAVLLGKKF 213
           +EMIS+PK RF+ IG+LEALGVA+GMAAAAM+PGPAIPIL+QTFLVWQL FSA+LLG+++
Sbjct: 154 NEMISIPKLRFVAIGILEALGVATGMAAAAMIPGPAIPILNQTFLVWQLAFSALLLGRRY 213

Query: 214 SVTQIAGCLLVATGVGVAVASGSNSGQMLSRVDFLWPSMMIASSAFQAGASIIKEFIFDD 273
           S  QI+GC LVA GV VAV+SGSN+ QMLS V+F+WP++MI SSAFQAGASIIKEFIF D
Sbjct: 214 SFNQISGCFLVAIGVVVAVSSGSNADQMLSGVEFIWPALMIISSAFQAGASIIKEFIFVD 273

Query: 274 AKKCLKGKSLDIFVVNSFGSGFQALFVLLFLPFLSNLKGIPFAELPLYLKSGAGCLLNLG 333
           A K LKGKSLDIFVVNSFGSGFQALFV+L LP LSNLKGIPFA+LP YLKSGAGCL+N+G
Sbjct: 274 AAKLLKGKSLDIFVVNSFGSGFQALFVVLLLPLLSNLKGIPFAQLPSYLKSGAGCLVNIG 333

Query: 334 ANTSGCNGAPLLPLLYIATNMAFNISMLRLMKISSAVVSSLVVMLSVPIAIYVLSLPLPY 393
            N  GC+GAP+LPLLYI  NMAFNIS+L L+K+SSAVVSSL V LSVPI+IYVLSLPLPY
Sbjct: 334 RNVPGCDGAPMLPLLYIMINMAFNISVLNLVKLSSAVVSSLAVTLSVPISIYVLSLPLPY 393

Query: 394 LPEGASLSPFFLFGSVILLLGLTLYNLPQPAKRSSK 429
           LPEG+ LSPFFL GS+IL+LGL LYN+ +P K++S 
Sbjct: 394 LPEGSGLSPFFLLGSMILVLGLVLYNVARPGKQASN 429

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363818123|ref|NP_001242115.1| uncharacterized protein LOC100787260 [Glycine max] gi|255635287|gb|ACU17997.1| unknown [Glycine max]

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 234/337 (69%), Positives = 279/337 (82%)

Query: 93  QIIIISSAVTVTLAIANRVLYKLALVPMKQYPFFLAQITTFGYVVIYFSILYTRYLMGIV 152
           ++++ SS + VT A+ANRVLYKLALVPMK+YPFFLAQ  TFGYVVIYFSILY RY   IV
Sbjct: 70  KLVLFSSTIVVTTAVANRVLYKLALVPMKEYPFFLAQFITFGYVVIYFSILYFRYRARIV 129

Query: 153 TDEMISLPKYRFLFIGMLEALGVASGMAAAAMLPGPAIPILSQTFLVWQLGFSAVLLGKK 212
           TDEM+++PK RF+ IG LEALG+ SGM+AAA+LPGP IPIL+QTFLVWQL FS +LL ++
Sbjct: 130 TDEMLAIPKLRFVAIGFLEALGLVSGMSAAAVLPGPVIPILNQTFLVWQLMFSTLLLRRR 189

Query: 213 FSVTQIAGCLLVATGVGVAVASGSNSGQMLSRVDFLWPSMMIASSAFQAGASIIKEFIFD 272
           +S+ Q+ GCLLVA GV VA+ SGSN+GQMLS V F WP++MI S +FQA AS++KE IF 
Sbjct: 190 YSINQLVGCLLVAVGVVVAITSGSNTGQMLSEVQFFWPALMIISCSFQAWASVMKESIFI 249

Query: 273 DAKKCLKGKSLDIFVVNSFGSGFQALFVLLFLPFLSNLKGIPFAELPLYLKSGAGCLLNL 332
           D+   LK KSLDIFVVNSFGSGFQALFVLL LP LSNL+GIPFA+LP Y KSGAGC LNL
Sbjct: 250 DSATQLKHKSLDIFVVNSFGSGFQALFVLLSLPILSNLRGIPFAQLPSYFKSGAGCFLNL 309

Query: 333 GANTSGCNGAPLLPLLYIATNMAFNISMLRLMKISSAVVSSLVVMLSVPIAIYVLSLPLP 392
           GA+   C+GAPLLPLLY+  N+AFNIS+L  +K SSAVV+SL+VMLSVPI++Y+LSLPLP
Sbjct: 310 GADNPNCDGAPLLPLLYVIINLAFNISLLNAVKTSSAVVASLLVMLSVPISVYILSLPLP 369

Query: 393 YLPEGASLSPFFLFGSVILLLGLTLYNLPQPAKRSSK 429
           YLPEG SLSPFFL G  ILL GL LYN  +P + SS+
Sbjct: 370 YLPEGTSLSPFFLLGCAILLCGLFLYNTTRPVRSSSE 406

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459052|ref|XP_002283727.1| PREDICTED: crt homolog 1 [Vitis vinifera] gi|302142085|emb|CBI19288.3| unnamed protein product [Vitis vinifera]

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 281/430 (65%), Positives = 332/430 (77%), Gaps = 21/430 (4%)

Query: 4   ISTSWFQAISSKPPLLKRRSHNFYGAKSRSLISMPADGFP------PCRSPLKYNFARGI 57
           +S   F  I  KP  L   ++  + +    LISM     P      P RSPL      G+
Sbjct: 7   VSCVRFHVIPPKP--LTLHTYTAHLSPFSPLISMHISQNPRYHLHFPSRSPL-----HGV 59

Query: 58  TSILYSSRRNTNFTARASTDDGNSPQTASPSSSNSQIIIISSAVTVTLAIANRVLYKLAL 117
           +S  ++S +  NF  RAS D+  +      SSSN+ ++I+ SA+TV LA+ NRV YKLAL
Sbjct: 60  SS--HNSPKTPNFRVRASADNSQT------SSSNTGLVIVCSAITVILAVVNRVFYKLAL 111

Query: 118 VPMKQYPFFLAQITTFGYVVIYFSILYTRYLMGIVTDEMISLPKYRFLFIGMLEALGVAS 177
           VP+KQYPFFLAQ TTFGY  IYFSILY RY  GIVTDEMI+LPK RF+ IG+LEALGVAS
Sbjct: 112 VPLKQYPFFLAQFTTFGYAAIYFSILYIRYRAGIVTDEMIALPKSRFMAIGILEALGVAS 171

Query: 178 GMAAAAMLPGPAIPILSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVGVAVASGSN 237
           GMA+AAMLPGPAIP+L+QTFLVWQL  S ++LG+K+S  QI GC LVA GV  AVASGSN
Sbjct: 172 GMASAAMLPGPAIPLLNQTFLVWQLALSTLILGRKYSFNQILGCFLVAAGVVTAVASGSN 231

Query: 238 SGQMLSRVDFLWPSMMIASSAFQAGASIIKEFIFDDAKKCLKGKSLDIFVVNSFGSGFQA 297
             QMLS ++F+WP++MIASSAFQAGASIIKEF+F DA   LKGK LDIFVVNSFGSGFQA
Sbjct: 232 GDQMLSGIEFIWPALMIASSAFQAGASIIKEFVFVDAATRLKGKLLDIFVVNSFGSGFQA 291

Query: 298 LFVLLFLPFLSNLKGIPFAELPLYLKSGAGCLLNLGANTSGCNGAPLLPLLYIATNMAFN 357
           LFVLL LP LSN +GIPF +LP YLK+GAGC LN+G+N  GC+GAPLLPLLY+ATN+AFN
Sbjct: 292 LFVLLLLPLLSNFRGIPFPQLPSYLKAGAGCFLNIGSNIPGCDGAPLLPLLYLATNIAFN 351

Query: 358 ISMLRLMKISSAVVSSLVVMLSVPIAIYVLSLPLPYLPEGASLSPFFLFGSVILLLGLTL 417
           IS+L L+KISSAVVS+L  M SVPI+IYVLSLPLPYLP+GASLSPFFLFG VILLLGL L
Sbjct: 352 ISLLNLVKISSAVVSTLAAMASVPISIYVLSLPLPYLPQGASLSPFFLFGGVILLLGLLL 411

Query: 418 YNLPQPAKRS 427
           YN+PQPAK++
Sbjct: 412 YNIPQPAKQA 421

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469797|ref|XP_004152605.1| PREDICTED: crt homolog 1-like [Cucumis sativus] gi|449516193|ref|XP_004165132.1| PREDICTED: crt homolog 1-like [Cucumis sativus]

 Score =  453 bits (1165), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 249/368 (67%), Positives = 301/368 (81%), Gaps = 7/368 (1%)

Query: 62  YSSRRNTNFTARASTDDGNSPQTASPSSSNSQIIIISSAVTVTLAIANRVLYKLALVPMK 121
           +SSR +++ T  AS  D NSP       + +++I++SS + V+LAIANRVLYKLALVP+K
Sbjct: 87  FSSRNDSSSTPHASNGDSNSP-------AKTKLIVVSSLIAVSLAIANRVLYKLALVPLK 139

Query: 122 QYPFFLAQITTFGYVVIYFSILYTRYLMGIVTDEMISLPKYRFLFIGMLEALGVASGMAA 181
           +YPFFLAQ+TTFGYV+ YFSILY R    IVT+EM+SLPK RF+ IG LEALG+A+GMAA
Sbjct: 140 EYPFFLAQLTTFGYVMAYFSILYLRRRANIVTEEMLSLPKSRFMAIGFLEALGIATGMAA 199

Query: 182 AAMLPGPAIPILSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVGVAVASGSNSGQM 241
           AA LPGPAIPILSQTFLVWQL FSA+LLG+K+S  QIAGC++V  GV VAV SGS++GQM
Sbjct: 200 AASLPGPAIPILSQTFLVWQLVFSAILLGRKYSWNQIAGCVIVTAGVVVAVGSGSDAGQM 259

Query: 242 LSRVDFLWPSMMIASSAFQAGASIIKEFIFDDAKKCLKGKSLDIFVVNSFGSGFQALFVL 301
           LS V  LWP +M+ SSA QA ASI+KEFIF DA   L+GKSLDIFVVNSFGSGFQALFVL
Sbjct: 260 LSGVAPLWPVLMVVSSACQAAASILKEFIFIDAATRLQGKSLDIFVVNSFGSGFQALFVL 319

Query: 302 LFLPFLSNLKGIPFAELPLYLKSGAGCLLNLGANTSGCNGAPLLPLLYIATNMAFNISML 361
           LFLPFLSNLKGIP A+LP YL  GAGC LN+GA  SGC GAPLLPLLY+  N+AFNI++L
Sbjct: 320 LFLPFLSNLKGIPIAKLPSYLMHGAGCFLNVGARRSGCEGAPLLPLLYVIINLAFNITVL 379

Query: 362 RLMKISSAVVSSLVVMLSVPIAIYVLSLPLPYLPEGASLSPFFLFGSVILLLGLTLYNLP 421
            ++K  SAVV+SLVVMLSVP++IY+LSLPLP+LPEGA LSP F+ GS++L+LGL  Y +P
Sbjct: 380 NVVKKFSAVVASLVVMLSVPVSIYILSLPLPFLPEGARLSPLFMIGSLMLVLGLAFYYIP 439

Query: 422 QPAKRSSK 429
            P+K  +K
Sbjct: 440 LPSKIEAK 447

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508047|ref|XP_003522773.1| PREDICTED: crt homolog 1-like [Glycine max]

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 233/329 (70%), Positives = 273/329 (82%)

Query: 101 VTVTLAIANRVLYKLALVPMKQYPFFLAQITTFGYVVIYFSILYTRYLMGIVTDEMISLP 160
           + VT A+ANRVLYKLALVPMK+YPFFLAQ  TFGYVVIYFSILY RY   IVTDEM+++P
Sbjct: 76  IVVTTAVANRVLYKLALVPMKEYPFFLAQFITFGYVVIYFSILYFRYRARIVTDEMLAIP 135

Query: 161 KYRFLFIGMLEALGVASGMAAAAMLPGPAIPILSQTFLVWQLGFSAVLLGKKFSVTQIAG 220
           K RF+ IG LEALG+ SGM+AAA+LPGP IPIL+QTFLVWQL FS +LL +++S+ Q+ G
Sbjct: 136 KLRFVAIGFLEALGLVSGMSAAAVLPGPVIPILNQTFLVWQLMFSTLLLRRRYSINQLVG 195

Query: 221 CLLVATGVGVAVASGSNSGQMLSRVDFLWPSMMIASSAFQAGASIIKEFIFDDAKKCLKG 280
           CLLVA GV VA+ SGSN+GQMLS V F WP++MI S +FQA AS+IKE+IF D+   LK 
Sbjct: 196 CLLVAVGVVVAITSGSNTGQMLSEVQFFWPALMIISCSFQALASVIKEYIFIDSATRLKH 255

Query: 281 KSLDIFVVNSFGSGFQALFVLLFLPFLSNLKGIPFAELPLYLKSGAGCLLNLGANTSGCN 340
           KSLDIFVVNSFGSGFQALFVLL LP LSNL+GIPF +LP Y KSGAGC LNLGA+   C 
Sbjct: 256 KSLDIFVVNSFGSGFQALFVLLSLPILSNLRGIPFDQLPSYFKSGAGCFLNLGADNPNCY 315

Query: 341 GAPLLPLLYIATNMAFNISMLRLMKISSAVVSSLVVMLSVPIAIYVLSLPLPYLPEGASL 400
           GAPLLPLLY+  N+AFNIS+L  +K SSAVV+SL+VMLSVPI++Y+LSLPLPYLPEG SL
Sbjct: 316 GAPLLPLLYVIINLAFNISLLNAVKTSSAVVASLLVMLSVPISVYILSLPLPYLPEGTSL 375

Query: 401 SPFFLFGSVILLLGLTLYNLPQPAKRSSK 429
           SPFFLFG  ILL GL LYN  +P + SS+
Sbjct: 376 SPFFLFGGAILLCGLFLYNTTRPVRNSSE 404

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30686536|ref|NP_194177.2| CRT (chloroquine-resistance transporter)-like transporter 2 [Arabidopsis thaliana] gi|334186873|ref|NP_001190820.1| CRT (chloroquine-resistance transporter)-like transporter 2 [Arabidopsis thaliana] gi|119935896|gb|ABM06027.1| At4g24460 [Arabidopsis thaliana] gi|332659507|gb|AEE84907.1| CRT (chloroquine-resistance transporter)-like transporter 2 [Arabidopsis thaliana] gi|332659508|gb|AEE84908.1| CRT (chloroquine-resistance transporter)-like transporter 2 [Arabidopsis thaliana]

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 256/412 (62%), Positives = 318/412 (77%), Gaps = 20/412 (4%)

Query: 22  RSHNFYGAKSRSLISMPADGFPPC---RSPLKYNFARGITSILYSSRRNTNFTARASTDD 78
           RS   +  +S +++SM       C   RS L+  F    T    S  R   F+  AST++
Sbjct: 34  RSSQLFSYRSTTMMSM-------CFLRRSDLRSRFLS--TPKTTSPMRRPRFSVGASTEE 84

Query: 79  GNSPQTASPSSSNSQIIIISSAVTVTLAIANRVLYKLALVPMKQYPFFLAQITTFGYVVI 138
            + P       SN  +I+ +S V V LA+ANRVLYKLALVPMKQYPFF+AQ+TTFGYV+I
Sbjct: 85  SSIP-------SNRNLIVANSVVIVALAVANRVLYKLALVPMKQYPFFMAQLTTFGYVLI 137

Query: 139 YFSILYTRYLMGIVTDEMISLPKYRFLFIGMLEALGVASGMAAAAMLPGPAIPILSQTFL 198
           YF+ILYTR  +GIVT+EM+ +PK+RF  IG LEALGVA+GMAAAAMLPGP IPIL+QT+L
Sbjct: 138 YFTILYTRRRLGIVTNEMMDVPKWRFAIIGFLEALGVATGMAAAAMLPGPVIPILNQTYL 197

Query: 199 VWQLGFSAVLLGKKFSVTQIAGCLLVATGVGVAVASGSNSGQMLSRVDFLWPSMMIASSA 258
           VWQL F+ ++LG++F + QIAGCLLVA GV VAV+SGS +   LS + FLWP++++AS+A
Sbjct: 198 VWQLLFALLILGRRFLLNQIAGCLLVAVGVVVAVSSGSGADTTLSGIGFLWPAVLVASAA 257

Query: 259 FQAGASIIKEFIFDDAKKCLKGKSLDIFVVNSFGSGFQALFVLLFLPFLSNLKGIPFAEL 318
           FQAGASIIKEF+F+DA K L+GKSLDIFVVNSFGSGFQALFV L LPFLSNLKGIPFA L
Sbjct: 258 FQAGASIIKEFVFNDAAKRLEGKSLDIFVVNSFGSGFQALFVFLLLPFLSNLKGIPFASL 317

Query: 319 PLYLKSGAGCLLNLGANTSGCNGAPLLPLLYIATNMAFNISMLRLMKISSAVVSSLVVML 378
           P YLK GAGC  N GA  SGC+GAP+LPLLYI+TN+AFNIS+L L+KISSA+VSSL +ML
Sbjct: 318 PSYLKDGAGCFFNTGAKISGCDGAPILPLLYISTNLAFNISLLHLVKISSAIVSSLTMML 377

Query: 379 SVPIAIYVLSLPLPYLPEGASLSPFFLFGSVILLLGLTLYNLP-QPAKRSSK 429
           SVP+A+Y++S PLPYLP G+SLS  F  G ++L+LGL LYN+P  P K+ +K
Sbjct: 378 SVPLAVYIMSKPLPYLPGGSSLSSNFTMGCIVLVLGLLLYNIPTTPTKQHTK 429

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297803666|ref|XP_002869717.1| hypothetical protein ARALYDRAFT_492400 [Arabidopsis lyrata subsp. lyrata] gi|297315553|gb|EFH45976.1| hypothetical protein ARALYDRAFT_492400 [Arabidopsis lyrata subsp. lyrata]

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 257/414 (62%), Positives = 313/414 (75%), Gaps = 19/414 (4%)

Query: 22  RSHNFYGAKSRS--LISMPADGFPPC---RSPLKYNFARGITSILYSSRRNTNFTARAST 76
           RS   Y    RS  L+S  +     C   RS L+  F     S  +  R    F+  AST
Sbjct: 24  RSPAIYQVSCRSSRLLSYRSTTMSTCFLRRSDLRSRF----LSTTFPMRHG--FSVNAST 77

Query: 77  DDGNSPQTASPSSSNSQIIIISSAVTVTLAIANRVLYKLALVPMKQYPFFLAQITTFGYV 136
           +    P       SN   I+++S V V LA+ANRVLYKLALVPMKQYPFF+AQ+TTFGYV
Sbjct: 78  EQSTIP-------SNRNHIVVNSVVIVALAVANRVLYKLALVPMKQYPFFMAQLTTFGYV 130

Query: 137 VIYFSILYTRYLMGIVTDEMISLPKYRFLFIGMLEALGVASGMAAAAMLPGPAIPILSQT 196
            IYF+ILYTR  +GIVT+EM+++PK+RF  IG LEA+GVA+GMAAAAMLPGP IPIL+QT
Sbjct: 131 FIYFTILYTRRRLGIVTNEMMAVPKWRFAIIGFLEAIGVATGMAAAAMLPGPVIPILNQT 190

Query: 197 FLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVGVAVASGSNSGQMLSRVDFLWPSMMIAS 256
           FLVWQL F+ ++LG++F + QIAGC LVA GV VAVASGS +   LS + FLWP++++AS
Sbjct: 191 FLVWQLLFALLILGRRFLLNQIAGCFLVAVGVVVAVASGSGADTTLSGIGFLWPAVLVAS 250

Query: 257 SAFQAGASIIKEFIFDDAKKCLKGKSLDIFVVNSFGSGFQALFVLLFLPFLSNLKGIPFA 316
           +AFQAGASIIKEF+F+DA K L+GK LD+FVVNSFGSGFQALFV L LPFLSNLKGIPFA
Sbjct: 251 AAFQAGASIIKEFVFNDAAKRLEGKPLDLFVVNSFGSGFQALFVFLLLPFLSNLKGIPFA 310

Query: 317 ELPLYLKSGAGCLLNLGANTSGCNGAPLLPLLYIATNMAFNISMLRLMKISSAVVSSLVV 376
            LP YLK GAGC  N GA  SGC+GAP+LPLLYIATN+AFNIS+L L+KISSA+VSSL V
Sbjct: 311 SLPSYLKDGAGCFFNTGAKISGCDGAPILPLLYIATNLAFNISLLHLVKISSAIVSSLAV 370

Query: 377 MLSVPIAIYVLSLPLPYLPEGASLSPFFLFGSVILLLGLTLYNLP-QPAKRSSK 429
           MLSVP+++YV+S PLPYLP G+SLS  F  G ++L+LGL LYN+P  P K+ +K
Sbjct: 371 MLSVPLSVYVMSKPLPYLPGGSSLSSNFTMGCIVLVLGLLLYNIPTTPTKQHTK 424

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|223946557|gb|ACN27362.1| unknown [Zea mays] gi|413942003|gb|AFW74652.1| hypothetical protein ZEAMMB73_664224 [Zea mays]

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 212/321 (66%), Positives = 260/321 (80%)

Query: 109 NRVLYKLALVPMKQYPFFLAQITTFGYVVIYFSILYTRYLMGIVTDEMISLPKYRFLFIG 168
           NRVLYKLALVP+K YPFFLAQ+TTFGYV +YFS+LYTRY  G+VT +M++LPK+RF+ IG
Sbjct: 22  NRVLYKLALVPLKAYPFFLAQLTTFGYVAVYFSMLYTRYRTGLVTRDMLALPKHRFVAIG 81

Query: 169 MLEALGVASGMAAAAMLPGPAIPILSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGV 228
           +LEALGV +GM+A AMLPGPAIPILSQ+FLVWQL FSA+LLG+ +S  Q+ GC LV +GV
Sbjct: 82  LLEALGVFAGMSAGAMLPGPAIPILSQSFLVWQLIFSALLLGRTYSARQVIGCFLVVSGV 141

Query: 229 GVAVASGSNSGQMLSRVDFLWPSMMIASSAFQAGASIIKEFIFDDAKKCLKGKSLDIFVV 288
            +AVASG++ GQ+LS V  +WP++MIASSAF AGASI+KE +F D  K LKGK  DIFVV
Sbjct: 142 ILAVASGADDGQLLSDVKLIWPALMIASSAFHAGASILKEAVFIDGAKRLKGKRPDIFVV 201

Query: 289 NSFGSGFQALFVLLFLPFLSNLKGIPFAELPLYLKSGAGCLLNLGANTSGCNGAPLLPLL 348
           NSFGSGFQA+FV L LPFLSNL+GI FAELP YL  GA C LN+  +   C GAP LPLL
Sbjct: 202 NSFGSGFQAVFVFLLLPFLSNLRGIKFAELPAYLNGGAECFLNVAESPIDCGGAPFLPLL 261

Query: 349 YIATNMAFNISMLRLMKISSAVVSSLVVMLSVPIAIYVLSLPLPYLPEGASLSPFFLFGS 408
           +I  NMAFN+S+L L+K+SSA+V+SL    +VPI+IY+LSLPLPY+P G  LS  F+ G+
Sbjct: 262 FIVVNMAFNVSLLNLVKMSSAIVASLTATSAVPISIYILSLPLPYIPHGTELSTSFIIGA 321

Query: 409 VILLLGLTLYNLPQPAKRSSK 429
           VILL+GL LYNLPQ + +  K
Sbjct: 322 VILLMGLILYNLPQSSLKQLK 342

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226528711|ref|NP_001144179.1| uncharacterized protein LOC100277036 [Zea mays] gi|195638058|gb|ACG38497.1| hypothetical protein [Zea mays]

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 212/321 (66%), Positives = 260/321 (80%)

Query: 109 NRVLYKLALVPMKQYPFFLAQITTFGYVVIYFSILYTRYLMGIVTDEMISLPKYRFLFIG 168
           NRVLYKLALVP+K YPFFLAQ+TTFGYV +YFS+LYTRY  G+VT +M++LPK+RF+ IG
Sbjct: 22  NRVLYKLALVPLKAYPFFLAQLTTFGYVAVYFSMLYTRYRTGLVTRDMLALPKHRFVAIG 81

Query: 169 MLEALGVASGMAAAAMLPGPAIPILSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGV 228
           +LEALGV +GM+A AMLPGPAIPILSQ+FLVWQL FSA+LLG+ +S  Q+ GC LV +GV
Sbjct: 82  LLEALGVFAGMSAGAMLPGPAIPILSQSFLVWQLIFSALLLGRTYSARQVIGCFLVVSGV 141

Query: 229 GVAVASGSNSGQMLSRVDFLWPSMMIASSAFQAGASIIKEFIFDDAKKCLKGKSLDIFVV 288
            +AVASG++ GQ+LS V  +WP++MIASSAF AGASI+KE +F D  K LKGK  DIFVV
Sbjct: 142 ILAVASGADDGQLLSDVKLIWPALMIASSAFHAGASILKEAVFIDGAKRLKGKRPDIFVV 201

Query: 289 NSFGSGFQALFVLLFLPFLSNLKGIPFAELPLYLKSGAGCLLNLGANTSGCNGAPLLPLL 348
           NSFGSGFQA+FV L LPFLSNL+GI FAELP YL  GA C LN+  +   C GAP LPLL
Sbjct: 202 NSFGSGFQAVFVFLLLPFLSNLRGIKFAELPAYLNGGAECFLNVAESPIDCGGAPFLPLL 261

Query: 349 YIATNMAFNISMLRLMKISSAVVSSLVVMLSVPIAIYVLSLPLPYLPEGASLSPFFLFGS 408
           +I  NMAFN+S+L L+K+SSA+V+SL    +VPI+IY+LSLPLPY+P G  LS  F+ G+
Sbjct: 262 FIMVNMAFNVSLLNLVKMSSAIVASLTATSAVPISIYILSLPLPYIPHGTELSTSFIIGA 321

Query: 409 VILLLGLTLYNLPQPAKRSSK 429
           VILL+GL LYNLPQ + +  K
Sbjct: 322 VILLMGLILYNLPQSSLKQLK 342

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218186938|gb|EEC69365.1| hypothetical protein OsI_38489 [Oryza sativa Indica Group]

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 217/323 (67%), Positives = 263/323 (81%)

Query: 109 NRVLYKLALVPMKQYPFFLAQITTFGYVVIYFSILYTRYLMGIVTDEMISLPKYRFLFIG 168
           NRVLYKLALVP+KQYPFFLAQ+TTFGYV +YFSILY RY  G+VT +M++LPK RF  IG
Sbjct: 21  NRVLYKLALVPLKQYPFFLAQLTTFGYVAVYFSILYARYRAGVVTGDMLALPKRRFAAIG 80

Query: 169 MLEALGVASGMAAAAMLPGPAIPILSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGV 228
           +LEALG+A+GM+A AMLPGPAIPILSQ+FLVWQL FSA+LLG+ +S+ QI GC LVA+GV
Sbjct: 81  LLEALGLAAGMSAGAMLPGPAIPILSQSFLVWQLIFSALLLGRTYSMRQIIGCFLVASGV 140

Query: 229 GVAVASGSNSGQMLSRVDFLWPSMMIASSAFQAGASIIKEFIFDDAKKCLKGKSLDIFVV 288
            +AVASG+N GQ LS V F+W ++M+ASSAFQAGASI+KE +F D  K LKG+  DIFVV
Sbjct: 141 ILAVASGANEGQFLSEVKFIWLALMVASSAFQAGASILKESVFIDGAKRLKGRRPDIFVV 200

Query: 289 NSFGSGFQALFVLLFLPFLSNLKGIPFAELPLYLKSGAGCLLNLGANTSGCNGAPLLPLL 348
           NSFGSGFQALFV L LP LSNLKGI FAELP YL  GA C LN+  +   C GAP LPLL
Sbjct: 201 NSFGSGFQALFVFLLLPLLSNLKGIKFAELPAYLNGGAECFLNVDDSLIDCGGAPFLPLL 260

Query: 349 YIATNMAFNISMLRLMKISSAVVSSLVVMLSVPIAIYVLSLPLPYLPEGASLSPFFLFGS 408
           +I  NMAFNI++L L+K+SSA+V+SL    +VPI+IY+LSLPLPY+P GA LS  F+ G 
Sbjct: 261 FILVNMAFNIALLNLVKMSSALVASLTATSAVPISIYILSLPLPYIPHGAELSSSFILGG 320

Query: 409 VILLLGLTLYNLPQPAKRSSKMT 431
           V+LL+GL +YNLPQ +K+ SK+ 
Sbjct: 321 VVLLMGLIIYNLPQSSKKQSKIE 343

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	431
TAIR|locus:2136032	431	CLT2 "CRT (chloroquine-resista	0.916	0.916	0.513	2.7e-100
TAIR|locus:2177008	452	CLT3 "CRT (chloroquine-resista	0.758	0.723	0.454	9e-77
TAIR|locus:2150250	507	CLT1 "CRT (chloroquine-resista	0.658	0.560	0.436	5.9e-76
DICTYBASE|DDB_G0276943	473	crtp1 "chloroquine resistance	0.522	0.475	0.207	4e-11
DICTYBASE|DDB_G0270204	478	crtp3 "chloroquine resistance	0.510	0.460	0.213	2.4e-09
DICTYBASE|DDB_G0277321	484	crtp2 "chloroquine resistance	0.512	0.456	0.205	8.5e-09

TAIR|locus:2136032 CLT2 "CRT (chloroquine-resistance transporter)-like transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 995 (355.3 bits), Expect = 2.7e-100, P = 2.7e-100
 Identities = 210/409 (51%), Positives = 263/409 (64%)

Query:    22 RSHNFYGAKSRSLISMPADGFPPCRSPLKYNFARGITSILYSSRRNTNFTARASTDDGXX 81
             RS   +  +S +++SM    F   RS L+  F    T    S  R   F+  AST++   
Sbjct:    34 RSSQLFSYRSTTMMSMC---FLR-RSDLRSRFLS--TPKTTSPMRRPRFSVGASTEESSI 87

Query:    82 XXXXXXXXXXXXXXXXXXXVTVTLAIANRVLYKLALVPMKQYPFFLAQITTFGYVVIYFS 141
                                V V LA+ANRVLYKLALVPMKQYPFF+AQ+TTFGYV+IYF+
Sbjct:    88 PSNRNLIVANSV-------VIVALAVANRVLYKLALVPMKQYPFFMAQLTTFGYVLIYFT 140

Query:   142 ILYTRYLMGIVTDEMISLPKYRFLFIGMLEXXXXXXXXXXXXXXXXXXXXXXSQTFLVWQ 201
             ILYTR  +GIVT+EM+ +PK+RF  IG LE                      +QT+LVWQ
Sbjct:   141 ILYTRRRLGIVTNEMMDVPKWRFAIIGFLEALGVATGMAAAAMLPGPVIPILNQTYLVWQ 200

Query:   202 LGFSAVLLGKKFSVTQIAGCLLXXXXXXXXXXXXXXXXQMLSRVDFLWPSMMIASSAFQA 261
             L F+ ++LG++F + QIAGCLL                  LS + FLWP++++AS+AFQA
Sbjct:   201 LLFALLILGRRFLLNQIAGCLLVAVGVVVAVSSGSGADTTLSGIGFLWPAVLVASAAFQA 260

Query:   262 GASIIKEFIFDDAKKCLKGKSLDIFVVNSFGSGFQALFVLLFLPFLSNLKGIPFAELPLY 321
             GASIIKEF+F+DA K L+GKSLDIFVVNSFGSGFQALFV L LPFLSNLKGIPFA LP Y
Sbjct:   261 GASIIKEFVFNDAAKRLEGKSLDIFVVNSFGSGFQALFVFLLLPFLSNLKGIPFASLPSY 320

Query:   322 LKSGAGCLLNLGANTSGCNGAPLLPLLYIATNMAFNISMLRLMKIXXXXXXXXXXXXXXP 381
             LK GAGC  N GA  SGC+GAP+LPLLYI+TN+AFNIS+L L+KI              P
Sbjct:   321 LKDGAGCFFNTGAKISGCDGAPILPLLYISTNLAFNISLLHLVKISSAIVSSLTMMLSVP 380

Query:   382 IAIYVLSLPLPYLPEGASLSPFFLFGSVILLLGLTLYNLPQ-PAKRSSK 429
             +A+Y++S PLPYLP G+SLS  F  G ++L+LGL LYN+P  P K+ +K
Sbjct:   381 LAVYIMSKPLPYLPGGSSLSSNFTMGCIVLVLGLLLYNIPTTPTKQHTK 429

GO:0009507 "chloroplast" evidence=IDA

GO:0002229 "defense response to oomycetes" evidence=IGI

GO:0009536 "plastid" evidence=IDA

GO:0034635 "glutathione transport" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IMP

TAIR|locus:2177008 CLT3 "CRT (chloroquine-resistance transporter)-like transporter 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 773 (277.2 bits), Expect = 9.0e-77, P = 9.0e-77
 Identities = 149/328 (45%), Positives = 202/328 (61%)

Query:   101 VTVTLAIANRVLYKLALVPMKQYPFFLAQITTFGYVVIYFSILYTRYLMGIVTDEMISLP 160
             VT    + NRV+YKLALVP+K+YPFFLAQ++TFGYV +Y++ILY RY  G VTD M+S+P
Sbjct:   113 VTAAFGVGNRVMYKLALVPLKEYPFFLAQLSTFGYVAVYYTILYFRYRAGTVTDAMLSVP 172

Query:   161 KYRFLFIGMLEXXXXXXXXXXXXXXXXXXXXXXSQTFLVWQLGFSAVLLGKKFSVTQIAG 220
             K  FL +G+LE                      SQTFLVWQ+ FS + LG+++SV QI G
Sbjct:   173 KSPFLIVGILEALAAAAGMAAAANLSGPSTTVLSQTFLVWQIFFSIIFLGRRYSVNQILG 232

Query:   221 CLLXXXXXXXXXXXXXXXXQMLSRVDFLWPSMMIASSAFQAGASIIKEFIFDDAKKCLKG 280
             C L                  L+    LW  +M+ S   Q   +++KE IF D+++ LKG
Sbjct:   233 CTLVALGVIVSVASGSGAAHSLNEAGVLWILLMVLSFLLQGAGTVLKEVIFIDSQRRLKG 292

Query:   281 KSLDIFVVNSFGSGFQALFVLLFLPFLSNLKGIPFAELPLYLKSGAGCLLNLGANTSGCN 340
              SLD+F+VNS+GS FQA+ + L LPFLS L GIPF +L  YLK GA C LN G  T GC+
Sbjct:   293 ASLDLFIVNSYGSAFQAICIALLLPFLSKLWGIPFNQLGTYLKDGAVCFLNNGTITKGCD 352

Query:   341 GAPLLPLLYIATNMAFNISMLRLMKIXXXXXXXXXXXXXXPIAIYVLSLPLPYLPEGASL 400
             GAP LPLL++  N+ +NI++LRL+KI              PIA+++ ++PLPYL   +SL
Sbjct:   353 GAPFLPLLFVIMNIGYNIALLRLLKISSAVVSCLASTVSVPIAVFLFTMPLPYLGVASSL 412

Query:   401 SPFFLFGSVILLLGLTLYN-LPQPAKRS 427
                F+ G++IL+LG+ LY+  P  A  S
Sbjct:   413 PKGFMGGTIILVLGMILYSWTPHGANSS 440

GO:0009507 "chloroplast" evidence=ISM

GO:0002229 "defense response to oomycetes" evidence=IGI

GO:0009536 "plastid" evidence=IDA

GO:0034635 "glutathione transport" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IMP

TAIR|locus:2150250 CLT1 "CRT (chloroquine-resistance transporter)-like transporter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 645 (232.1 bits), Expect = 5.9e-76, Sum P(2) = 5.9e-76
 Identities = 124/284 (43%), Positives = 168/284 (59%)

Query:   135 YVVIYFSILYTRYLMGIVTDEMISLPKYRFLFIGMLEXXXXXXXXXXXXXXXXXXXXXXS 194
             YV +YFSILY RY  GIVT EM+S+PK  FL +G+LE                      S
Sbjct:   205 YVAVYFSILYFRYRAGIVTKEMLSVPKLPFLIVGVLESLALAAGMAAASNLSGPSTTVLS 264

Query:   195 QTFLVWQLGFSAVLLGKKFSVTQIAGCLLXXXXXXXXXXXXXXXXQMLSRVDFLWPSMMI 254
             QTFLVWQ+ FS + LG+++ + QI GC L                        LW  +M+
Sbjct:   265 QTFLVWQILFSIIFLGRRYRINQILGCTLVAFGVIVSVASGSGAAHSFKDTGILWSLLMV 324

Query:   255 ASSAFQAGASIIKEFIFDDAKKCLKGKSLDIFVVNSFGSGFQALFVLLFLPFLSNLKGIP 314
              S   Q   +++KE IF D+KK LKG SLD+FVVNS+GS FQ + + L LPFLS L GIP
Sbjct:   325 FSFLLQGADTVMKEVIFLDSKKRLKGASLDLFVVNSYGSIFQVICIALLLPFLSKLWGIP 384

Query:   315 FAELPLYLKSGAGCLLNLGANTSGCNGAPLLPLLYIATNMAFNISMLRLMKIXXXXXXXX 374
             F +LP Y++ G  C LN+G+  +GC GAPLLP++++  NMA+NIS+LRL+KI        
Sbjct:   385 FNQLPSYIRDGGACFLNIGSRITGCEGAPLLPVMFVMMNMAYNISLLRLIKISSAVVSSL 444

Query:   375 XXXXXXPIAIYVLSLPLPYLPEGASLSPFFLFGSVILLLGLTLY 418
                   PIA+Y  +LPLPYL   ++L   F+ G++IL++G+ LY
Sbjct:   445 ASTVSVPIAVYCFTLPLPYLGVASTLPRGFVAGTIILVVGMLLY 488

GO:0009507 "chloroplast" evidence=ISM

GO:0002229 "defense response to oomycetes" evidence=IGI

GO:0009536 "plastid" evidence=IDA

GO:0034635 "glutathione transport" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IMP

DICTYBASE|DDB_G0276943 crtp1 "chloroquine resistance transporter-like protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 144 (55.7 bits), Expect = 4.0e-11, Sum P(2) = 4.0e-11
 Identities = 49/236 (20%), Positives = 93/236 (39%)

Query:   103 VTLAIANRVLYKLALVPMKQYPFFLAQITTFGYVVIYFSIL-YTRYLMGIVTDEMISLPK 161
             VT  + N VL K  +     Y FFL+Q+T FGYV I+ ++  Y  +    +  E    P 
Sbjct:    60 VTSGVINSVLLKKVMNKFTNYAFFLSQLTNFGYVPIFGAVTAYKIFFTKDIPQETRDFPT 119

Query:   162 YRFLFIGMLEXXXXXXXXXXXXXXXXXXXXXXSQTFLVWQLGFSAVLLGKKFSVTQIAGC 221
              +F  +G L+                      +Q  + + +  S + L +++S+ Q+ G 
Sbjct:   120 RKFAIMGALDAITGFFVVIGGVSTSGPLQQLLNQAIIPFTMIASFIFLKERYSLIQLGGA 179

Query:   222 LLXXXXXXXXXXXXXXXXQMLSRVDFLWPSMMIASSAFQAGASIIKEFIFDDAKKCLKGK 281
             L+                       F W    + S    A +++ K+  F          
Sbjct:   180 LVIIGGVVTSLIPSLLGGSSGGNKPF-WNFFYLLSVIPGALSNVYKDIGFQAVA------ 232

Query:   282 SLDIFVVNSFGSGFQALFVLLFLP---FLSNLKGIPFAELPLYLKSGAGCLLNLGA 334
              +D++ +  + S +Q++F L   P   +L     + F ++  ++K GA CL  + +
Sbjct:   233 DMDVWYLQYWDSLYQSIFGLFLFPVNNWLPPPATVKFEQILPFMKEGAECLAGINS 288

GO:0012506 "vesicle membrane" evidence=IDA

GO:0003674 "molecular_function" evidence=ND

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030659 "cytoplasmic vesicle membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

DICTYBASE|DDB_G0270204 crtp3 "chloroquine resistance transporter-like protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 133 (51.9 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
 Identities = 50/234 (21%), Positives = 96/234 (41%)

Query:   107 IANRVLYKLALVPMKQYPFFLAQITTFGYVVIYF-SILYTRYLMGIVTDEMISLPKYRFL 165
             + N VL K  ++    Y FFL+QIT +GY+ I+  ++ Y  Y    V  E  + P+Y+F+
Sbjct:    67 VINVVLLKKLMIKFVNYGFFLSQITNYGYLPIFLVAMWYKMYCTSDVPKETRNFPQYKFV 126

Query:   166 FIGMLEXXXXXXXXXXXXXXXXXXXXXXSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLXX 225
              +G+L+                      +Q  + + +  S + L +++S+ Q+ G  +  
Sbjct:   127 IMGLLDAINGFFVVIGGVSTSGPLQQLLNQAIIPFTMIASFIFLRERYSLFQLGGAAVIL 186

Query:   226 XXXXXXXXXXXXXXQMLSRVDFLWPSMMIASSAFQAGASIIKEFIFDDAKKCLKGKSLDI 285
                                + F +    + S    A +++ K+  F           +D+
Sbjct:   187 GGVIVSLIPSLVGGSSGGNILF-YNFFYLISVIPGALSNVYKDIAFQSI-------DMDV 238

Query:   286 FVVNSFGSGFQALFVLLFLP---FLSNLKGIPFAELPLYLKSGAGCLLNLGANT 336
             + +  +   +Q+LF  +  P   +L     I F E+   ++ GA CL   G NT
Sbjct:   239 WYLQFWDCLYQSLFGSILFPVNNWLPPPATIKFTEIIPSMRDGALCLG--GKNT 290

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030659 "cytoplasmic vesicle membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

DICTYBASE|DDB_G0277321 crtp2 "chloroquine resistance transporter-like protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 121 (47.7 bits), Expect = 8.5e-09, Sum P(2) = 8.5e-09
 Identities = 48/234 (20%), Positives = 95/234 (40%)

Query:   107 IANRVLYKLALVPMKQYPFFLAQITTFGYVVIYFSI-LYTRYLMGIVTDEMISLPKYRFL 165
             + N +L K  +     Y FFL Q+T +GYV I+ +I LY       +  +  S P+++F+
Sbjct:    72 VINSLLLKKVMNVFTNYGFFLNQLTNYGYVPIFGAIVLYKILFTNDIPKDTRSFPQWKFV 131

Query:   166 FIGMLEXXXXXXXXXXXXXXXXXXXXXXSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLXX 225
              +G L+                      +Q+ + + +  S + L +++S+ Q+ G L+  
Sbjct:   132 IMGALDAVTGYFVVIGGIKTTGPLQQLLNQSVIPFTMLLSFIFLKERYSLIQLGGALIII 191

Query:   226 XXXXXXXXXXXXXXQMLSRVDFLWPSMMIASSAFQAGASIIKEFIFDDAKKCLKGKSLDI 285
                                + F +    + S    A +++ K   F   +       +D+
Sbjct:   192 GGVVVSLIPSLTGGNTSGNMLF-YNFFYLISMIPYAFSNVYKAIGFSTVE------DMDV 244

Query:   286 FVVNSFGSGFQALFVLLFLP---FLSNLKGIPFAELPLYLKSGAGCLLNLGANT 336
             + +  F + +Q+L   +  P   +L     + F ++   LK+G  CL   G NT
Sbjct:   245 WYLQYFDALYQSLVGTVLFPINNWLPPPSDMKFNQVIPQLKAGGKCLG--GINT 296

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030659 "cytoplasmic vesicle membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	431
pfam08627	130	pfam08627, CRT-like, CRT-like	2e-05

>gnl|CDD|117200 pfam08627, CRT-like, CRT-like

 Score = 43.4 bits (102), Expect = 2e-05
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 1/71 (1%)

Query: 95  IIISSAVTVTLAIANRVLYKLALVPMKQYPFFLAQITTFGYVVIYFSI-LYTRYLMGIVT 153
           I+I   + +   + N VL K  +     Y FFL+Q+T +GYV I+ +   Y  Y    + 
Sbjct: 58  ILIYVVLYIISGVINSVLLKKVMNKFTNYGFFLSQLTNYGYVPIFGAAMWYKIYFTSDIP 117

Query: 154 DEMISLPKYRF 164
            E  + P+Y+F
Sbjct: 118 KETRNFPQYKF 128

This region is found in proteins related to Plasmodium falciparum chloroquine resistance transporter (CRT). Length = 130

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	431
KOG3912	372	consensus Predicted integral membrane protein [Gen	100.0
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	100.0
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	99.89
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.87
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	99.87
KOG2766	336	consensus Predicted membrane protein [Function unk	99.86
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.85
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	99.85
PLN00411	358	nodulin MtN21 family protein; Provisional	99.8
PRK11272	292	putative DMT superfamily transporter inner membran	99.78
PRK11689	295	aromatic amino acid exporter; Provisional	99.78
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.78
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.72
PRK15430	296	putative chloramphenical resistance permease RarD;	99.71
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.65
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	99.65
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	99.6
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.55
COG0697	292	RhaT Permeases of the drug/metabolite transporter	99.5
KOG2765	416	consensus Predicted membrane protein [Function unk	99.48
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.4
KOG1581	327	consensus UDP-galactose transporter related protei	99.32
PF08627	130	CRT-like: CRT-like; InterPro: IPR013936 This regio	99.25
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	99.19
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	99.09
KOG1582	367	consensus UDP-galactose transporter related protei	99.05
KOG4510	346	consensus Permease of the drug/metabolite transpor	99.01
KOG1443	349	consensus Predicted integral membrane protein [Fun	98.8
PF13536	113	EmrE: Multidrug resistance efflux transporter	98.78
KOG1580	337	consensus UDP-galactose transporter related protei	98.64
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	98.63
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	98.55
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	98.52
COG2510	140	Predicted membrane protein [Function unknown]	98.42
COG2962	293	RarD Predicted permeases [General function predict	98.32
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	98.28
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	98.22
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	98.13
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	97.93
KOG2922	335	consensus Uncharacterized conserved protein [Funct	97.82
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	97.82
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	97.77
PLN00411	358	nodulin MtN21 family protein; Provisional	97.77
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	97.59
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	97.59
PRK10532	293	threonine and homoserine efflux system; Provisiona	97.44
PRK11689	295	aromatic amino acid exporter; Provisional	97.36
PRK11272	292	putative DMT superfamily transporter inner membran	97.12
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	97.1
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	97.03
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	97.01
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	96.95
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	96.89
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	96.82
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	96.81
PRK15430	296	putative chloramphenical resistance permease RarD;	96.79
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	96.59
PRK10650	109	multidrug efflux system protein MdtI; Provisional	96.54
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	96.54
COG0697	292	RhaT Permeases of the drug/metabolite transporter	96.52
COG2076	106	EmrE Membrane transporters of cations and cationic	96.41
PRK09541	110	emrE multidrug efflux protein; Reviewed	96.32
PRK11431	105	multidrug efflux system protein; Provisional	96.23
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	96.17
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	96.09
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	95.69
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	95.51
COG2510	140	Predicted membrane protein [Function unknown]	95.46
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	95.19
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	95.15
PRK13499	345	rhamnose-proton symporter; Provisional	94.79
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	94.67
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	94.63
KOG2765	416	consensus Predicted membrane protein [Function unk	94.03
KOG1580	337	consensus UDP-galactose transporter related protei	93.2
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	91.98
COG1742	109	Uncharacterized conserved protein [Function unknow	91.92
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	91.42
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	91.13
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	90.38
PF02694	107	UPF0060: Uncharacterised BCR, YnfA/UPF0060 family;	90.12
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	89.82
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	89.74
PRK02237	109	hypothetical protein; Provisional	88.38
COG2962	293	RarD Predicted permeases [General function predict	88.21
PRK13499	345	rhamnose-proton symporter; Provisional	86.8
KOG4510	346	consensus Permease of the drug/metabolite transpor	86.34
PF13536	113	EmrE: Multidrug resistance efflux transporter	85.87
PRK09541	110	emrE multidrug efflux protein; Reviewed	85.78
KOG1581	327	consensus UDP-galactose transporter related protei	85.32
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	84.76

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=100.00  E-value=1.9e-34  Score=274.17  Aligned_cols=308  Identities=18%  Similarity=0.170  Sum_probs=235.0

Q ss_pred             HHHHHHHHhhhhHHHHHHHHhcc------CCChhHHHHHHHHHHHHHHHHHHHHHHHhccc---cc-------cccccCC
Q 014092           97 ISSAVTVTLAIANRVLYKLALVP------MKQYPFFLAQITTFGYVVIYFSILYTRYLMGI---VT-------DEMISLP  160 (431)
Q Consensus        97 i~~~~~li~Gs~n~v~~K~~~~~------~~~~Pffla~l~~~~~~ll~~~il~~r~~~~~---~~-------~~~~~~p  160 (431)
                      ++.+.|+..|++|.++.|++...      -++||+.++..|++|++.|+....+.|++...   ..       ++...++
T Consensus         6 ~ls~imvvsGs~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~   85 (372)
T KOG3912|consen    6 FLSLIMVVSGSFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFN   85 (372)
T ss_pred             hhhhhhhhhccHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCC
Confidence            46778999999999999999863      47899999999999997777655434433211   11       1111333


Q ss_pred             CchhhHHHHHHHHHHHHHHHhhccCCccHHHHHhhhhHHHHHHHHHHHhcCccchhHHHHHHHHhhheeEEeccCCC---
Q 014092          161 KYRFLFIGMLEALGVASGMAAAAMLPGPAIPILSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVGVAVASGSN---  237 (431)
Q Consensus       161 ~~~~~iiglld~~~~~l~~~g~~~~~~~~~~IL~qs~i~~T~llS~~fLk~r~~~~qiiG~~lv~~GV~vv~~s~~~---  237 (431)
                      ...+..+++||.++..+++.|+.+|+++.+||+|++.++|+.++|..||+|+++.+||+|+..+.+|++++...+-.   
T Consensus        86 p~lfl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~  165 (372)
T KOG3912|consen   86 PVLFLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVT  165 (372)
T ss_pred             cceecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeeccccc
Confidence            44566789999999999999999999999999999999999999999999999999999999999999999765321   


Q ss_pred             CCCccccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCccCceeehhhhhhHHHHH-HHHHHHhhhccCCCCCC
Q 014092          238 SGQMLSRVDFLWPSMMIASSAFQAGASIIKEFIFDDAKKCLKGKSLDIFVVNSFGSGFQALF-VLLFLPFLSNLKGIPFA  316 (431)
Q Consensus       238 ~~~~~~~~~~ig~~lillA~i~~A~s~V~~E~~f~~y~k~lk~~~~d~~~l~~w~~l~q~l~-g~llLpi~~~~~g~~~~  316 (431)
                      +.-..-.+.+.|+++++.|++.-|+|.|+|||       ++|..+++|...++|+++|++.+ ..+.+|+....-|.+++
T Consensus       166 ~p~~d~s~iitGdllIiiaqiivaiQ~v~Eek-------~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS  238 (372)
T KOG3912|consen  166 DPYTDYSSIITGDLLIIIAQIIVAIQMVCEEK-------QLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFS  238 (372)
T ss_pred             CCccccccchhhhHHHHHHHHHHHHHHHHHHh-------hhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCc
Confidence            11111123577999999999999999999996       44555899999999999999554 45556665433332333


Q ss_pred             CchHh-HhhhhHhhhccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHhHHHhhhHhhhcccCCCC
Q 014092          317 ELPLY-LKSGAGCLLNLGANTSGCNGAPLLPLLYIATNMAFNISMLRLMKISSAVVSSLVVMLSVPIAIYVLSLPLPYLP  395 (431)
Q Consensus       317 ~~~~~-~~~g~~c~~g~~~~~~~c~~a~~~~llyl~~~~~~n~~~~~l~k~~sA~~~sl~~~l~vPl~~~~fs~~~~~l~  395 (431)
                      --++- +.|-...+-..+..+    ........+++++++||+.+..++|+.||+++.+.+.+| ...+|++++.+    
T Consensus       239 ~~~~g~~eD~~~~~~~~~e~p----~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lR-t~~IWv~si~m----  309 (372)
T KOG3912|consen  239 CNPRGVLEDWGDAFAALQESP----SLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLR-TYVIWVFSIAM----  309 (372)
T ss_pred             CCCCcchhhHHHHHHHhcCCc----hhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhh-hhhhhHhHHHH----
Confidence            22222 222222222222100    122334556778889999999999999999999999988 58899998876    


Q ss_pred             CCCCCcHHHHHHHHHHHhhheeecC
Q 014092          396 EGASLSPFFLFGSVILLLGLTLYNL  420 (431)
Q Consensus       396 ~gE~ls~~~liG~~lI~~Gv~lYn~  420 (431)
                      ++|.+...++.|++++..|+++||.
T Consensus       310 ~~E~f~llqilGFliLi~Gi~lY~~  334 (372)
T KOG3912|consen  310 GWEYFHLLQILGFLILIMGIILYNQ  334 (372)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6899999999999999999999983

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=100.00  E-value=1.4e-31  Score=267.99  Aligned_cols=281  Identities=16%  Similarity=0.197  Sum_probs=213.9

Q ss_pred             hHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCchhhHHHHHHHHHHHHHHHhhccCCc
Q 014092          108 ANRVLYKLALVPMKQYPFFLAQITTFGYVVIYFSILYTRYLMGIVTDEMISLPKYRFLFIGMLEALGVASGMAAAAMLPG  187 (431)
Q Consensus       108 ~n~v~~K~~~~~~~~~Pffla~l~~~~~~ll~~~il~~r~~~~~~~~~~~~~p~~~~~iiglld~~~~~l~~~g~~~~~~  187 (431)
                      .|.....+... -.+.|.+|+.++.+..+++|.++...|+..+... +..+.++|+++++|++|+.+|++.+.|+.||+.
T Consensus        28 t~~~s~~l~~~-~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~-~~~~~~~w~y~lla~~Dv~aN~~~v~a~~yTsv  105 (334)
T PF06027_consen   28 TGTFSSLLANK-GVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWL-KVLKRPWWKYFLLALLDVEANYLVVLAYQYTSV  105 (334)
T ss_pred             HHHHHHHHHhc-CccCcHHHHHHHHHHHHHHHhhhhhhccccccch-hhcchhHHHHHHHHHHHHHHHHHHHHHhhcccH
Confidence            44444444444 5568999998877776677776654454432222 234567899999999999999999999999999


Q ss_pred             cHHHHHhhhhHHHHHHHHHHHhcCccchhHHHHHHHHhhheeEEeccCCCCCC--ccccccchHHHHHHHHHHHHHHHHH
Q 014092          188 PAIPILSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVGVAVASGSNSGQ--MLSRVDFLWPSMMIASSAFQAGASI  265 (431)
Q Consensus       188 ~~~~IL~qs~i~~T~llS~~fLk~r~~~~qiiG~~lv~~GV~vv~~s~~~~~~--~~~~~~~ig~~lillA~i~~A~s~V  265 (431)
                      +..|+|+|+.+||++++|+++||+||++.|++|++++++|++++..+|..+++  ..++++++|++++++|++++|+++|
T Consensus       106 tS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~GDll~l~~a~lya~~nV  185 (334)
T PF06027_consen  106 TSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILGDLLALLGAILYAVSNV  185 (334)
T ss_pred             hHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCccchhHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999877643321  2345689999999999999999999


Q ss_pred             HHHHhhhhhhhhccCCccCceeehhhhhhHHHHHHHHHHHhhhccCCCCCCCchHhHhhhhHhhhccCCCCCCCCCccHH
Q 014092          266 IKEFIFDDAKKCLKGKSLDIFVVNSFGSGFQALFVLLFLPFLSNLKGIPFAELPLYLKSGAGCLLNLGANTSGCNGAPLL  345 (431)
Q Consensus       266 ~~E~~f~~y~k~lk~~~~d~~~l~~w~~l~q~l~g~llLpi~~~~~g~~~~~~~~~~~~g~~c~~g~~~~~~~c~~a~~~  345 (431)
                      +||+.++|         .|..++.+|+|+|++++..+.+.++   |.   +++.+..|++               .....
T Consensus       186 ~~E~~v~~---------~~~~~~lg~~Glfg~ii~~iq~~il---e~---~~i~~~~w~~---------------~~~~~  235 (334)
T PF06027_consen  186 LEEKLVKK---------APRVEFLGMLGLFGFIISGIQLAIL---ER---SGIESIHWTS---------------QVIGL  235 (334)
T ss_pred             HHHHhccc---------CCHHHHHHHHHHHHHHHHHHHHHhe---eh---hhhhccCCCh---------------hhHHH
Confidence            99986643         4566788999999999865544443   32   2222211111               11223


Q ss_pred             HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHhHHHhhhHhhhcccCCCCCCCCCcHHHHHHHHHHHhhheeecCCCCCc
Q 014092          346 PLLYIATNMAFNISMLRLMKISSAVVSSLVVMLSVPIAIYVLSLPLPYLPEGASLSPFFLFGSVILLLGLTLYNLPQPAK  425 (431)
Q Consensus       346 ~llyl~~~~~~n~~~~~l~k~~sA~~~sl~~~l~vPl~~~~fs~~~~~l~~gE~ls~~~liG~~lI~~Gv~lYn~~~~~~  425 (431)
                      ...|.++...++.+...+++..||+..++.. +...+.++++++.+    .|++++|.+++|+++|++|+++|+..+++.
T Consensus       236 ~v~~~~~lf~~y~l~p~~l~~ssAt~~nLsL-LTsd~~ali~~i~~----f~~~~~~ly~~af~lIiiG~vvy~~~~~~~  310 (334)
T PF06027_consen  236 LVGYALCLFLFYSLVPIVLRMSSATFFNLSL-LTSDFYALIIDIFF----FGYKFSWLYILAFALIIIGFVVYNLAESPE  310 (334)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCccceeehHH-HHhhHHHHHHHHHh----cCccccHHHHHHHHHHHHHhheEEccCCcc
Confidence            5667777777777878999999999999964 44455556666533    489999999999999999999999876543

Some of the sequences in this family are annotated as putative membrane proteins.

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=99.89  E-value=2.7e-21  Score=192.39  Aligned_cols=270  Identities=22%  Similarity=0.288  Sum_probs=190.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCchhhHHHHHHHHHHHHHHHhhccCCccHHHHHhhhhHHHHH
Q 014092          123 YPFFLAQITTFGYVVIYFSILYTRYLMGIVTDEMISLPKYRFLFIGMLEALGVASGMAAAAMLPGPAIPILSQTFLVWQL  202 (431)
Q Consensus       123 ~Pffla~l~~~~~~ll~~~il~~r~~~~~~~~~~~~~p~~~~~iiglld~~~~~l~~~g~~~~~~~~~~IL~qs~i~~T~  202 (431)
                      +|.+++...++...++.....  ...+   .++.++.|.++++++++++..+..+.+.++.|+|.+.+++++++.++++|
T Consensus        31 ~~~~lt~~q~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vm  105 (303)
T PF08449_consen   31 FPLFLTFVQFAFNALFSFILL--SLFK---FPKSRKIPLKKYAILSFLFFLASVLSNAALKYISYPTQIVFKSSKPIPVM  105 (303)
T ss_pred             ccHHHHHHHHHHHHHHHHHHH--Hhcc---ccCCCcChHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHH
Confidence            799999885554433222211  1111   23344667788999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCccchhHHHHHHHHhhheeEEeccCCCCCC---ccccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc
Q 014092          203 GFSAVLLGKKFSVTQIAGCLLVATGVGVAVASGSNSGQ---MLSRVDFLWPSMMIASSAFQAGASIIKEFIFDDAKKCLK  279 (431)
Q Consensus       203 llS~~fLk~r~~~~qiiG~~lv~~GV~vv~~s~~~~~~---~~~~~~~ig~~lillA~i~~A~s~V~~E~~f~~y~k~lk  279 (431)
                      +++.+++||||+++|+++++++.+|+++...++..+++   ....+...|+++++++.++.|+.+++||+.+++|+    
T Consensus       106 i~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~sl~~~a~~~~~qe~~~~~~~----  181 (303)
T PF08449_consen  106 ILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLLSLLLDAFTGVYQEKLFKKYG----  181 (303)
T ss_pred             HHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhC----
Confidence            99999999999999999999999999998766543221   11112234999999999999999999999998872    


Q ss_pred             CCccCceeehhhhhhHHHHHHHHHHHhhhccCCCCCCCchHhHhhhhHhhhccCCCCCCCCCccHHHHHHHHHHHHHHHH
Q 014092          280 GKSLDIFVVNSFGSGFQALFVLLFLPFLSNLKGIPFAELPLYLKSGAGCLLNLGANTSGCNGAPLLPLLYIATNMAFNIS  359 (431)
Q Consensus       280 ~~~~d~~~l~~w~~l~q~l~g~llLpi~~~~~g~~~~~~~~~~~~g~~c~~g~~~~~~~c~~a~~~~llyl~~~~~~n~~  359 (431)
                         .+++++..+...++.++..+..+.+.  .+    +..    +++.-.....       ......+++.++....+..
T Consensus       182 ---~~~~~~mfy~n~~~~~~~~~~~~~l~--~~----~~~----~~~~f~~~~p-------~~~~~l~~~s~~~~~g~~~  241 (303)
T PF08449_consen  182 ---KSPWELMFYTNLFSLPFLLILLFLLP--TG----EFR----SAIRFISAHP-------SVLLYLLLFSLTGALGQFF  241 (303)
T ss_pred             ---CcHHHHHHHHHHHHHHHHHHHHHHHH--hh----Hhh----HHHHHHHHhH-------HHHHHHHHHHHHHHHHHHH
Confidence               45566666555565555333222211  11    111    1111000100       0112233444445555555


Q ss_pred             HHHHhcccchHHHHHHHHhHHHhhhHhhhcccCCCCCCCCCcHHHHHHHHHHHhhheeecCCCCCcc
Q 014092          360 MLRLMKISSAVVSSLVVMLSVPIAIYVLSLPLPYLPEGASLSPFFLFGSVILLLGLTLYNLPQPAKR  426 (431)
Q Consensus       360 ~~~l~k~~sA~~~sl~~~l~vPl~~~~fs~~~~~l~~gE~ls~~~liG~~lI~~Gv~lYn~~~~~~~  426 (431)
                      ...++|+.||.+.+++.++|-+++.++ +..+    .|+++++.+++|.++++.|+.+|+..++||+
T Consensus       242 i~~~~~~~~al~~t~v~t~Rk~~sill-S~~~----f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~~  303 (303)
T PF08449_consen  242 IFYLIKKFSALTTTIVTTLRKFLSILL-SVII----FGHPLSPLQWIGIVLVFAGIFLYSYAKKKKN  303 (303)
T ss_pred             HHHHHHhcCchhhhhHHHHHHHHHHHH-HHHh----cCCcCChHHHHHHHHhHHHHHHHHHhhccCC
Confidence            667889999999999999886555444 4433    3899999999999999999999998887764

; GO: 0055085 transmembrane transport

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.87  E-value=1.3e-20  Score=186.93  Aligned_cols=289  Identities=19%  Similarity=0.211  Sum_probs=192.6

Q ss_pred             HHHHhhhhH---HHHHHHHhccCCChhHHHHHH-HHHHHHHHHHHHHHHHHhccccccccccCCCchhhHHHHHHHHHHH
Q 014092          101 VTVTLAIAN---RVLYKLALVPMKQYPFFLAQI-TTFGYVVIYFSILYTRYLMGIVTDEMISLPKYRFLFIGMLEALGVA  176 (431)
Q Consensus       101 ~~li~Gs~n---~v~~K~~~~~~~~~Pffla~l-~~~~~~ll~~~il~~r~~~~~~~~~~~~~p~~~~~iiglld~~~~~  176 (431)
                      ..++|...|   .+.-|+..++ .++|.+++.. +.++.+.+..  .+.....+  +++..+..+++++.+|++.+....
T Consensus         6 ~~~~w~~~~~~~~~~NK~~l~~-~~~P~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~   80 (302)
T TIGR00817         6 LFGLWYFLNVYFNIYNKKLLNV-FPYPYFKTLISLAVGSLYCLL--SWSSGLPK--RLKISSALLKLLLPVAIVHTIGHV   80 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhh-CChhHHHHHHHHHHHHHHHHH--HHHhCCCC--CCCCCHHHHHHHHHHHHHHHHHHH
Confidence            345555555   5677888876 4689999988 3334322211  11100000  011111123457778999888888


Q ss_pred             HHHHhhccCCccHHHHHhhhhHHHHHHHHHHHhcCccchhHHHHHHHHhhheeEEeccCCCCCCccccccchHHHHHHHH
Q 014092          177 SGMAAAAMLPGPAIPILSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVGVAVASGSNSGQMLSRVDFLWPSMMIAS  256 (431)
Q Consensus       177 l~~~g~~~~~~~~~~IL~qs~i~~T~llS~~fLk~r~~~~qiiG~~lv~~GV~vv~~s~~~~~~~~~~~~~ig~~lillA  256 (431)
                      +.+.++.+++++..+++..+.++++++++++++|||+++++++|++++++|+++....  +.+     ....|+++.++|
T Consensus        81 ~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~--~~~-----~~~~G~~~~l~a  153 (302)
T TIGR00817        81 TSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDT--ELS-----FNWAGFLSAMIS  153 (302)
T ss_pred             HHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCC--ccc-----ccHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999865321  111     145699999999


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhccCCccCceeehhhhhhHHHHHHHH-HHHhhhccCCCCCCCchHhHhhhhHhhhccCCC
Q 014092          257 SAFQAGASIIKEFIFDDAKKCLKGKSLDIFVVNSFGSGFQALFVLL-FLPFLSNLKGIPFAELPLYLKSGAGCLLNLGAN  335 (431)
Q Consensus       257 ~i~~A~s~V~~E~~f~~y~k~lk~~~~d~~~l~~w~~l~q~l~g~l-lLpi~~~~~g~~~~~~~~~~~~g~~c~~g~~~~  335 (431)
                      ++++|+.+++.|+..       ++++.|++.++.    ||.+++.+ ++|+....++.+.  ..    +.+....  .. 
T Consensus       154 ~~~~a~~~v~~k~~~-------~~~~~~~~~~~~----~~~~~~~~~l~p~~~~~~~~~~--~~----~~~~~~~--~~-  213 (302)
T TIGR00817       154 NITFVSRNIFSKKAM-------TIKSLDKTNLYA----YISIMSLFLLSPPAFITEGPPF--LP----HGFMQAI--SG-  213 (302)
T ss_pred             HHHHHHHHHHHHHhh-------ccCCCCcccHHH----HHHHHHHHHHHHHHHHHcchHH--HH----HHHHHhh--cc-
Confidence            999999999988643       323578888888    55555543 5565443333110  00    0110000  00 


Q ss_pred             CCCCCCccHHH-HHH--HHHHHHHHHHHHHHhcccchHHHHHHHHhHHHhhhHhhhcccCCCCCCCCCcHHHHHHHHHHH
Q 014092          336 TSGCNGAPLLP-LLY--IATNMAFNISMLRLMKISSAVVSSLVVMLSVPIAIYVLSLPLPYLPEGASLSPFFLFGSVILL  412 (431)
Q Consensus       336 ~~~c~~a~~~~-lly--l~~~~~~n~~~~~l~k~~sA~~~sl~~~l~vPl~~~~fs~~~~~l~~gE~ls~~~liG~~lI~  412 (431)
                         -....... .++  ..+...+|...+..+|+.||++.++.. ..-|+.+.+++..+    .||++++.+++|.++++
T Consensus       214 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~-~l~pv~~~~~~~~~----lge~lt~~~~~G~~lil  285 (302)
T TIGR00817       214 ---VNVTKIYTVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGN-CMKRVVVIVVSILF----FGTKISPQQVFGTGIAI  285 (302)
T ss_pred             ---cCchHHHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHh-hhhhhheeeeehhh----cCCCCchhHHHHHHHHH
Confidence               00001111 111  112334555556789999999999985 46699998887544    49999999999999999


Q ss_pred             hhheeecCCCCCccccc
Q 014092          413 LGLTLYNLPQPAKRSSK  429 (431)
Q Consensus       413 ~Gv~lYn~~~~~~~~~~  429 (431)
                      .|+++|+..+.+|++.|
T Consensus       286 ~Gv~l~~~~k~~~~~~~  302 (302)
T TIGR00817       286 AGVFLYSRVKAQKPKPK  302 (302)
T ss_pred             HHHHHHHHHhccCcCCC
Confidence            99999998766665543

specificities overlap.

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=99.87  E-value=3.2e-21  Score=186.37  Aligned_cols=217  Identities=21%  Similarity=0.244  Sum_probs=167.2

Q ss_pred             chhhHHHHHHHHHHHHHHHhhccCCccHHHHHhhhhHHHHHHHHHHHhcCccchhHHHHHHHHhhheeEEeccCCCC---
Q 014092          162 YRFLFIGMLEALGVASGMAAAAMLPGPAIPILSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVGVAVASGSNS---  238 (431)
Q Consensus       162 ~~~~iiglld~~~~~l~~~g~~~~~~~~~~IL~qs~i~~T~llS~~fLk~r~~~~qiiG~~lv~~GV~vv~~s~~~~---  238 (431)
                      +++++|+++|+++|.+.++++.+++++.+|+++|+.+++|+++++++||||++++||+++++.++|++++..++...   
T Consensus        18 ~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~~~~   97 (244)
T PF04142_consen   18 LKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQSSDN   97 (244)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcccccc
Confidence            57899999999999999999999999999999999999999999999999999999999999999999997643321   


Q ss_pred             -C-Cc-----cccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCccCceeehhhhhhHHHHHHHHHHHhhhccC
Q 014092          239 -G-QM-----LSRVDFLWPSMMIASSAFQAGASIIKEFIFDDAKKCLKGKSLDIFVVNSFGSGFQALFVLLFLPFLSNLK  311 (431)
Q Consensus       239 -~-~~-----~~~~~~ig~~lillA~i~~A~s~V~~E~~f~~y~k~lk~~~~d~~~l~~w~~l~q~l~g~llLpi~~~~~  311 (431)
                       + +.     ...+...|..+++++++++|+++||+|+++       |+++.+.|..|.|.+.++.++.++.....   +
T Consensus        98 ~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~l-------K~~~~s~~~~N~qL~~~gi~~~~~~~~~~---~  167 (244)
T PF04142_consen   98 SSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLL-------KRSNVSLWIQNMQLYLFGILFNLLALLLS---D  167 (244)
T ss_pred             ccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHh-------cccchhHHHHHHHHHHHHHHHHHHHHhcc---c
Confidence             1 11     123457899999999999999999999765       55668889899888888887764442222   1


Q ss_pred             CCCCCCchHhHhhhhHhhhccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHhHHHhhhHhhhccc
Q 014092          312 GIPFAELPLYLKSGAGCLLNLGANTSGCNGAPLLPLLYIATNMAFNISMLRLMKISSAVVSSLVVMLSVPIAIYVLSLPL  391 (431)
Q Consensus       312 g~~~~~~~~~~~~g~~c~~g~~~~~~~c~~a~~~~llyl~~~~~~n~~~~~l~k~~sA~~~sl~~~l~vPl~~~~fs~~~  391 (431)
                      +.+..+      +|+            .++-....++-++.+...++....++||.+++...+...+.+.+++++-... 
T Consensus       168 ~~~~~~------~g~------------f~G~~~~~~~~i~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~l-  228 (244)
T PF04142_consen  168 GSAISE------SGF------------FHGYSWWVWIVIFLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLL-  228 (244)
T ss_pred             cccccc------CCc------------hhhcchHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-
Confidence            111111      111            1111223556667778888888899999999999998877766666554333 


Q ss_pred             CCCCCCCCCcHHHHHHHHHH
Q 014092          392 PYLPEGASLSPFFLFGSVIL  411 (431)
Q Consensus       392 ~~l~~gE~ls~~~liG~~lI  411 (431)
                          .|.+++..+++|.++|
T Consensus       229 ----f~~~~s~~f~lg~~~V  244 (244)
T PF04142_consen  229 ----FGFPPSLSFLLGAALV  244 (244)
T ss_pred             ----hCCCCchHHhhheecC
Confidence                3899999999987654

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=99.86  E-value=4.7e-23  Score=194.33  Aligned_cols=267  Identities=16%  Similarity=0.149  Sum_probs=194.6

Q ss_pred             HHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCchhhHHHHHHHHHHHHHHHhhccCCccHH
Q 014092          111 VLYKLALVPMKQYPFFLAQITTFGYVVIYFSILYTRYLMGIVTDEMISLPKYRFLFIGMLEALGVASGMAAAAMLPGPAI  190 (431)
Q Consensus       111 v~~K~~~~~~~~~Pffla~l~~~~~~ll~~~il~~r~~~~~~~~~~~~~p~~~~~iiglld~~~~~l~~~g~~~~~~~~~  190 (431)
                      .....+...--|-|-+|+.+......++|.++..+|++  .     .+..|+++.++|+.|+.+|++..-|.+||+-...
T Consensus        35 ~tss~la~k~iN~Pt~QtFl~Y~LLalVY~~~~~fR~~--~-----~~~~~~hYilla~~DVEaNy~vV~AyQyTsmtSi  107 (336)
T KOG2766|consen   35 FTSSELARKGINAPTSQTFLNYVLLALVYGPIMLFRRK--Y-----IKAKWRHYILLAFVDVEANYFVVKAYQYTSMTSI  107 (336)
T ss_pred             hhhHHHHhccCCCccHHHHHHHHHHHHHHhhHHHhhhH--H-----HHHHHHHhhheeEEeecccEEEeeehhhcchHHH
Confidence            33333443334568888877443334566666544432  1     1334567899999999999999999999999999


Q ss_pred             HHHhhhhHHHHHHHHHHHhcCccchhHHHHHHHHhhheeEEeccCCCCCC-ccccccchHHHHHHHHHHHHHHHHHHHHH
Q 014092          191 PILSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVGVAVASGSNSGQ-MLSRVDFLWPSMMIASSAFQAGASIIKEF  269 (431)
Q Consensus       191 ~IL~qs~i~~T~llS~~fLk~r~~~~qiiG~~lv~~GV~vv~~s~~~~~~-~~~~~~~ig~~lillA~i~~A~s~V~~E~  269 (431)
                      ++|.+..+|..+++|++|||.||++.|+.|+++|..||++++.++..+++ +.++|+..|+.++++++-++|++|+.||.
T Consensus       108 ~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsnp~~GD~lvi~GATlYaVSNv~EEf  187 (336)
T KOG2766|consen  108 MLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFLVIAGATLYAVSNVSEEF  187 (336)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccccccCCCCCccCcEEEEecceeeeeccccHHH
Confidence            99999999999999999999999999999999999999999987654332 23467899999999999999999999998


Q ss_pred             hhhhhhhhccCCccCceeehhhhhhHHHHHHHHHHHhhhccCCCCCCCchHhHhhhhHhhhccCCCCCCCCCccHHHHHH
Q 014092          270 IFDDAKKCLKGKSLDIFVVNSFGSGFQALFVLLFLPFLSNLKGIPFAELPLYLKSGAGCLLNLGANTSGCNGAPLLPLLY  349 (431)
Q Consensus       270 ~f~~y~k~lk~~~~d~~~l~~w~~l~q~l~g~llLpi~~~~~g~~~~~~~~~~~~g~~c~~g~~~~~~~c~~a~~~~lly  349 (431)
                      +.         ++.|..++.++.++|+.+++++- ++...      .+.....||                ++...++.+
T Consensus       188 lv---------kn~d~~elm~~lgLfGaIIsaIQ-~i~~~------~~~~tl~w~----------------~~i~~yl~f  235 (336)
T KOG2766|consen  188 LV---------KNADRVELMGFLGLFGAIISAIQ-FIFER------HHVSTLHWD----------------SAIFLYLRF  235 (336)
T ss_pred             HH---------hcCcHHHHHHHHHHHHHHHHHHH-Hhhhc------cceeeEeeh----------------HHHHHHHHH
Confidence            65         25677888899999999998775 33321      112111121                122334556


Q ss_pred             HHHHHHHHHHHHHHhcccchHHHHHHHHhHHHhhhHhhhcccCCCCCCCCCcHHHHHHHHHHHhhheeecCCCC
Q 014092          350 IATNMAFNISMLRLMKISSAVVSSLVVMLSVPIAIYVLSLPLPYLPEGASLSPFFLFGSVILLLGLTLYNLPQP  423 (431)
Q Consensus       350 l~~~~~~n~~~~~l~k~~sA~~~sl~~~l~vPl~~~~fs~~~~~l~~gE~ls~~~liG~~lI~~Gv~lYn~~~~  423 (431)
                      ..+.+.++-+...+.|.+||+..++..  ++ ---|  ++.+..  .|-.++|.+.++++.+..|.++|..+++
T Consensus       236 ~L~MFllYsl~pil~k~~~aT~~nlsl--LT-sDmw--sl~i~~--FgYhv~wLY~laF~~i~~GliiYs~re~  302 (336)
T KOG2766|consen  236 ALTMFLLYSLAPILIKTNSATMFNLSL--LT-SDMW--SLLIRT--FGYHVDWLYFLAFATIATGLIIYSTREK  302 (336)
T ss_pred             HHHHHHHHHhhHHheecCCceEEEhhH--hH-HHHH--HHHHHH--HhcchhhhhHHHHHHHHHhhEEeecccc
Confidence            666666777778899999999998852  21 1111  111111  1556899999999999999999965543

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.85  E-value=4.8e-19  Score=179.86  Aligned_cols=288  Identities=15%  Similarity=0.157  Sum_probs=190.7

Q ss_pred             HHHHhhhhH---HHHHHHHhccCCChhHHHHHH-HHHHHHHHHHHHHHH-HHhc-cccccccccCCCchhhHHHHHHHHH
Q 014092          101 VTVTLAIAN---RVLYKLALVPMKQYPFFLAQI-TTFGYVVIYFSILYT-RYLM-GIVTDEMISLPKYRFLFIGMLEALG  174 (431)
Q Consensus       101 ~~li~Gs~n---~v~~K~~~~~~~~~Pffla~l-~~~~~~ll~~~il~~-r~~~-~~~~~~~~~~p~~~~~iiglld~~~  174 (431)
                      .++.|-..|   .+..|.....+ ++|++++.+ +.++.+.+ . +++. ++++ .+.+  ..+..+++++.+|++....
T Consensus        53 ~~~~wy~~s~~~~~~nK~vl~~~-~~P~~l~~~~~~~~~l~~-~-~~~~~~~~~~~~~~--~~~~~~~~llp~gl~~~~~  127 (350)
T PTZ00343         53 LFLTWYALNVLYVVDNKLALNML-PLPWTISSLQLFVGWLFA-L-LYWATGFRKIPRIK--SLKLFLKNFLPQGLCHLFV  127 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhC-ChhHHHHHHHHHHHHHHH-H-HHHHhCCCCCCCCC--CHHHHHHHHHHHHHHHHHH
Confidence            445555555   67788888776 479999999 44443221 1 1111 1111 1110  0111234577889999888


Q ss_pred             HHHHHHhhccCCccHHHHHhhhhHHHHHHHHHHHhcCccchhHHHHHHHHhhheeEEeccCCCCCCccccccchHHHHHH
Q 014092          175 VASGMAAAAMLPGPAIPILSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVGVAVASGSNSGQMLSRVDFLWPSMMI  254 (431)
Q Consensus       175 ~~l~~~g~~~~~~~~~~IL~qs~i~~T~llS~~fLk~r~~~~qiiG~~lv~~GV~vv~~s~~~~~~~~~~~~~ig~~lil  254 (431)
                      +...++++.+++++..++++.+.++++++++++++|||+++++++|++++++|+.++...+.+    .   ...|.++.+
T Consensus       128 ~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~~----~---~~~G~~~~l  200 (350)
T PTZ00343        128 HFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKELH----F---TWLAFWCAM  200 (350)
T ss_pred             HHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccch----h---HHHHHHHHH
Confidence            888889999999999999999999999999999999999999999999999999998642211    1   367999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhccCCccCceeehhhhhhHHHHHHHH-HHHhhhccCCCCCCCchHhHhhhhHhhhccC
Q 014092          255 ASSAFQAGASIIKEFIFDDAKKCLKGKSLDIFVVNSFGSGFQALFVLL-FLPFLSNLKGIPFAELPLYLKSGAGCLLNLG  333 (431)
Q Consensus       255 lA~i~~A~s~V~~E~~f~~y~k~lk~~~~d~~~l~~w~~l~q~l~g~l-lLpi~~~~~g~~~~~~~~~~~~g~~c~~g~~  333 (431)
                      +|++++|+.+++.|+..++++.  ++++.++..+..    ++.+++.+ ++|+....|+   .+......+..   ....
T Consensus       201 ~s~~~~a~~~i~~k~~~~~~~~--~~~~~~~~~~~~----~~~~~~~l~~lp~~~~~e~---~~~~~~~~~~~---~~~~  268 (350)
T PTZ00343        201 LSNLGSSLRSIFAKKTMKNKSE--IGENLTASNIYM----LLTLIASLISLPLVLFFEG---KKWVPVWTNYT---ANMT  268 (350)
T ss_pred             HHHHHHHHHHHHHHHHhccccc--ccccCCHHHHHH----HHHHHHHHHHHHHHHHHhh---HHHHHHHHHhh---hccc
Confidence            9999999999999987655421  223355443322    33445443 5666543332   11111100000   0000


Q ss_pred             CCCCCCCCccHH--HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHhHHHhhhHhhhcccCCCCCCCCCcHHHHHHHHHH
Q 014092          334 ANTSGCNGAPLL--PLLYIATNMAFNISMLRLMKISSAVVSSLVVMLSVPIAIYVLSLPLPYLPEGASLSPFFLFGSVIL  411 (431)
Q Consensus       334 ~~~~~c~~a~~~--~llyl~~~~~~n~~~~~l~k~~sA~~~sl~~~l~vPl~~~~fs~~~~~l~~gE~ls~~~liG~~lI  411 (431)
                          .-.....+  .+...+....+|...+..+++.++.+.++...+. |+.+++++..+    .||++++.+++|.+++
T Consensus       269 ----~~~~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk-~V~~iv~s~l~----~ge~lt~~~~iG~~li  339 (350)
T PTZ00343        269 ----NYTKGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLK-RVVIIVSSIII----FQTQVTLLGYLGMAVA  339 (350)
T ss_pred             ----ccchHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH-HHHHhhhhHHH----hCCCCchHhHHHHHHH
Confidence                00011111  1222333445666666799999999999987654 88888888654    4999999999999999


Q ss_pred             HhhheeecCC
Q 014092          412 LLGLTLYNLP  421 (431)
Q Consensus       412 ~~Gv~lYn~~  421 (431)
                      +.|+++|+.-
T Consensus       340 i~Gv~lYs~~  349 (350)
T PTZ00343        340 ILGALLYSLF  349 (350)
T ss_pred             HHHHHHHhhc
Confidence            9999999864

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=99.85  E-value=3e-19  Score=176.82  Aligned_cols=231  Identities=19%  Similarity=0.244  Sum_probs=181.4

Q ss_pred             chhhHHHHHHHHHHHHHHHhhccCCccHHHHHhhhhHHHHHHHHHHHhcCccchhHHHHHHHHhhheeEEecc---CCCC
Q 014092          162 YRFLFIGMLEALGVASGMAAAAMLPGPAIPILSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVGVAVAS---GSNS  238 (431)
Q Consensus       162 ~~~~iiglld~~~~~l~~~g~~~~~~~~~~IL~qs~i~~T~llS~~fLk~r~~~~qiiG~~lv~~GV~vv~~s---~~~~  238 (431)
                      .++.+|+++++++|.+.++++.|.|+..+|+..|..|+.|++++.++|+||++++||.++++.++|++++..+   +.++
T Consensus        93 lk~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a  172 (345)
T KOG2234|consen   93 LKVSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGA  172 (345)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCc
Confidence            4689999999999999999999999999999999999999999999999999999999999999999999732   2221


Q ss_pred             C-CccccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCccCceeehhhhhhHHHHHHHHHHHhhhccCCCCCCC
Q 014092          239 G-QMLSRVDFLWPSMMIASSAFQAGASIIKEFIFDDAKKCLKGKSLDIFVVNSFGSGFQALFVLLFLPFLSNLKGIPFAE  317 (431)
Q Consensus       239 ~-~~~~~~~~ig~~lillA~i~~A~s~V~~E~~f~~y~k~lk~~~~d~~~l~~w~~l~q~l~g~llLpi~~~~~g~~~~~  317 (431)
                      . .....+.+.|...++.+|..+++++||.|++       +|+.+.+.|..|-..+.++.++.++.+...   ++   +.
T Consensus       173 ~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEki-------LK~s~~s~wi~NiqL~~~g~~f~~l~~~~~---d~---~~  239 (345)
T KOG2234|consen  173 KSESSAQNPFLGLVAVLVACFLSGFAGVYFEKI-------LKGSNVSLWIRNIQLYFFGILFNLLTILLQ---DG---EA  239 (345)
T ss_pred             cCCCcccchhhhHHHHHHHHHHHHHHHHHHHHH-------HhcCCchHHHHHHHHHHHHHHHHHHHHhhc---cc---cc
Confidence            1 1223568999999999999999999999965       477788999888877777777654322221   11   11


Q ss_pred             chHhHhhhhHhhhccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHhHHHhhhHhhhcccCCCCCC
Q 014092          318 LPLYLKSGAGCLLNLGANTSGCNGAPLLPLLYIATNMAFNISMLRLMKISSAVVSSLVVMLSVPIAIYVLSLPLPYLPEG  397 (431)
Q Consensus       318 ~~~~~~~g~~c~~g~~~~~~~c~~a~~~~llyl~~~~~~n~~~~~l~k~~sA~~~sl~~~l~vPl~~~~fs~~~~~l~~g  397 (431)
                      ..   +.|+            ..|-..+.++-+..+.+.++....++||.++.....+.++.+.++.++. +.   + +|
T Consensus       240 i~---~~gf------------f~G~s~~vw~vVl~~a~gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S-~~---L-f~  299 (345)
T KOG2234|consen  240 IN---EYGF------------FYGYSSIVWLVVLLNAVGGLLVSLVMKYADNILKGFSTSVAIILTTVAS-IA---L-FD  299 (345)
T ss_pred             cc---cCCc------------cccccHHHHHHHHHHhccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HH---H-cc
Confidence            11   3333            2233345677777888888888899999999999998766665665554 22   2 37


Q ss_pred             CCCcHHHHHHHHHHHhhheeecCCCCCc
Q 014092          398 ASLSPFFLFGSVILLLGLTLYNLPQPAK  425 (431)
Q Consensus       398 E~ls~~~liG~~lI~~Gv~lYn~~~~~~  425 (431)
                      -.+|..++.|..+|+..+.+|+..+.+.
T Consensus       300 ~~~t~~F~lG~~lVi~Si~lY~~~P~~~  327 (345)
T KOG2234|consen  300 FQLTLYFLLGALLVILSIFLYSLYPARD  327 (345)
T ss_pred             CCchHHHHHHHHHHHHHHHHhhcCCccc
Confidence            7889999999999999999999666554

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.80  E-value=6.3e-18  Score=172.03  Aligned_cols=290  Identities=11%  Similarity=0.083  Sum_probs=178.5

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHhccCCChhHHHHHH-HHHHHHHHHHHHHHHHHhcccccc-ccccCCCchhhHHHHHHHH
Q 014092           96 IISSAVTVTLAIANRVLYKLALVPMKQYPFFLAQI-TTFGYVVIYFSILYTRYLMGIVTD-EMISLPKYRFLFIGMLEAL  173 (431)
Q Consensus        96 ~i~~~~~li~Gs~n~v~~K~~~~~~~~~Pffla~l-~~~~~~ll~~~il~~r~~~~~~~~-~~~~~p~~~~~iiglld~~  173 (431)
                      +..+.+-+.-+ ...++.|...+.-- .|+.+..+ ..++. ++..++.+.+.+.+..++ +++  .+.++.++|++...
T Consensus        16 ~~~~~~q~~~~-~~~~~~k~a~~~G~-~~~~~~~~R~~iA~-l~Ll~~~~~~~~~~~~~~~~~~--~~~~l~l~g~~g~~   90 (358)
T PLN00411         16 TAMLATETSVV-GISTLFKVATSKGL-NIYPFLGYSYLLAS-LLLLPSLFFTNRSRSLPPLSVS--ILSKIGLLGFLGSM   90 (358)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHCCC-CccHHHHHHHHHHH-HHHHHHHHHHHHhcccCcchHH--HHHHHHHHHHHHHH
Confidence            33444444444 55677777775422 24555555 22332 222323232222111111 111  12346667887755


Q ss_pred             HHHHHHHhhccCCccHHHHHhhhhHHHHHHHHHHH------hcCccchhHHHHHHHHhhheeEEeccCCCC---------
Q 014092          174 GVASGMAAAAMLPGPAIPILSQTFLVWQLGFSAVL------LGKKFSVTQIAGCLLVATGVGVAVASGSNS---------  238 (431)
Q Consensus       174 ~~~l~~~g~~~~~~~~~~IL~qs~i~~T~llS~~f------Lk~r~~~~qiiG~~lv~~GV~vv~~s~~~~---------  238 (431)
                      .+.+.+.|+.+++++..+++.++.++|++++++++      +|||++.+|++|++++++|++++...++..         
T Consensus        91 ~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~  170 (358)
T PLN00411         91 YVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPY  170 (358)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCccccccccccc
Confidence            55689999999999999999999999999999999      699999999999999999998875422110         


Q ss_pred             ---------CCccccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCccCceeehhhhhhHHHHHHHH-HHHhhh
Q 014092          239 ---------GQMLSRVDFLWPSMMIASSAFQAGASIIKEFIFDDAKKCLKGKSLDIFVVNSFGSGFQALFVLL-FLPFLS  308 (431)
Q Consensus       239 ---------~~~~~~~~~ig~~lillA~i~~A~s~V~~E~~f~~y~k~lk~~~~d~~~l~~w~~l~q~l~g~l-lLpi~~  308 (431)
                               ......+..+|+++.++|+++||+.++++++..++|        -+....++    ++.+++.+ ..+...
T Consensus       171 ~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~--------~~~~~~t~----~~~~~~~~~~~~~~l  238 (358)
T PLN00411        171 LNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEY--------PAAFTVSF----LYTVCVSIVTSMIGL  238 (358)
T ss_pred             ccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--------CcHhHHHH----HHHHHHHHHHHHHHH
Confidence                     000011125589999999999999999999765544        12222334    44444332 222222


Q ss_pred             ccCCCCCCCchHhHhhhhHhhhccCCCCCCCCCccHHHHHHHH--HHHHHHHHHHHHhcccchHHHHHHHHhHHHhhhHh
Q 014092          309 NLKGIPFAELPLYLKSGAGCLLNLGANTSGCNGAPLLPLLYIA--TNMAFNISMLRLMKISSAVVSSLVVMLSVPIAIYV  386 (431)
Q Consensus       309 ~~~g~~~~~~~~~~~~g~~c~~g~~~~~~~c~~a~~~~llyl~--~~~~~n~~~~~l~k~~sA~~~sl~~~l~vPl~~~~  386 (431)
                      ..++.+.....    ..+              ....+.++|..  ..++| .++...+|+.++...++.. ...|+++.+
T Consensus       239 ~~~~~~~~~~~----~~~--------------~~~~~~i~y~~i~t~lay-~lw~~~v~~~ga~~as~~~-~L~PV~a~l  298 (358)
T PLN00411        239 VVEKNNPSVWI----IHF--------------DITLITIVTMAIITSVYY-VIHSWTVRHKGPLYLAIFK-PLSILIAVV  298 (358)
T ss_pred             HHccCCcccce----ecc--------------chHHHHHHHHHHHHHHHH-HHHHHHHhccCchHHHHHH-hHHHHHHHH
Confidence            22221000000    000              00112233322  22233 3445677888888888865 577999999


Q ss_pred             hhcccCCCCCCCCCcHHHHHHHHHHHhhheeecCCCCCcc
Q 014092          387 LSLPLPYLPEGASLSPFFLFGSVILLLGLTLYNLPQPAKR  426 (431)
Q Consensus       387 fs~~~~~l~~gE~ls~~~liG~~lI~~Gv~lYn~~~~~~~  426 (431)
                      ++..+    .||++++.+++|.++|+.|+++.+++++++.
T Consensus       299 lg~l~----LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~~~  334 (358)
T PLN00411        299 MGAIF----LNDSLYLGCLIGGILITLGFYAVMWGKANEE  334 (358)
T ss_pred             HHHHH----hCCCCcHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            98765    4999999999999999999999987765543

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.78  E-value=8.1e-17  Score=159.32  Aligned_cols=276  Identities=16%  Similarity=0.188  Sum_probs=182.2

Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHhccCCChhHHHHHHHHHHH-HHHHHHHHHHHHhccccccccccCCCchhhHHHHHH
Q 014092           93 QIIIISSAVTVTLAIANRVLYKLALVPMKQYPFFLAQITTFGY-VVIYFSILYTRYLMGIVTDEMISLPKYRFLFIGMLE  171 (431)
Q Consensus        93 ~~i~i~~~~~li~Gs~n~v~~K~~~~~~~~~Pffla~l~~~~~-~ll~~~il~~r~~~~~~~~~~~~~p~~~~~iiglld  171 (431)
                      ..+..+++..++|| .|.+..|...+++.  |+..+.+ ++.. .++..++...+ +.+ .+  . +..+++..+.|.+.
T Consensus         8 ~~~~~~~~~~~iWg-~~~~~~K~~~~~~~--p~~~~~~-R~~~a~l~ll~~~~~~-~~~-~~--~-~~~~~~~~~~g~~~   78 (292)
T PRK11272          8 PLFGALFALYIIWG-STYLVIRIGVESWP--PLMMAGV-RFLIAGILLLAFLLLR-GHP-LP--T-LRQWLNAALIGLLL   78 (292)
T ss_pred             HHHHHHHHHHHHHh-hHHHHHHHHhccCC--HHHHHHH-HHHHHHHHHHHHHHHh-CCC-CC--c-HHHHHHHHHHHHHH
Confidence            35566777778888 79999999888774  6677776 3332 22223322222 111 11  1 11123456678776


Q ss_pred             -HHHHHHHHHhh-ccCCccHHHHHhhhhHHHHHHHHHHHhcCccchhHHHHHHHHhhheeEEeccCCCCCCccccccchH
Q 014092          172 -ALGVASGMAAA-AMLPGPAIPILSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVGVAVASGSNSGQMLSRVDFLW  249 (431)
Q Consensus       172 -~~~~~l~~~g~-~~~~~~~~~IL~qs~i~~T~llS~~fLk~r~~~~qiiG~~lv~~GV~vv~~s~~~~~~~~~~~~~ig  249 (431)
                       ...+.+.+++. .+++++..+++..+.++++++++.+ +|||++++|++|++++++|+.++..++.. +     ....|
T Consensus        79 ~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~~-~-----~~~~G  151 (292)
T PRK11272         79 LAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGNL-S-----GNPWG  151 (292)
T ss_pred             HHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCccc-c-----cchHH
Confidence             45677888888 8999999999999999999999986 69999999999999999999877543221 1     13468


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCccCceeehhhhhhHHHHHHHHH-HHhhhccCCCCCCCchHhHhhhhHh
Q 014092          250 PSMMIASSAFQAGASIIKEFIFDDAKKCLKGKSLDIFVVNSFGSGFQALFVLLF-LPFLSNLKGIPFAELPLYLKSGAGC  328 (431)
Q Consensus       250 ~~lillA~i~~A~s~V~~E~~f~~y~k~lk~~~~d~~~l~~w~~l~q~l~g~ll-Lpi~~~~~g~~~~~~~~~~~~g~~c  328 (431)
                      +++.++|++++|+.+++.|+.        + ++ ++...++    +|..++.+. ++... ..+.+....++        
T Consensus       152 ~l~~l~a~~~~a~~~~~~~~~--------~-~~-~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~--------  208 (292)
T PRK11272        152 AILILIASASWAFGSVWSSRL--------P-LP-VGMMAGA----AEMLAAGVVLLIASL-LSGERLTALPT--------  208 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc--------C-CC-cchHHHH----HHHHHHHHHHHHHHH-HcCCcccccCC--------
Confidence            999999999999999998851        1 11 2222334    666665443 33332 21111111000        


Q ss_pred             hhccCCCCCCCCCccHHHHHHHH--HHHHHHHHHHHHhcccchHHHHHHHHhHHHhhhHhhhcccCCCCCCCCCcHHHHH
Q 014092          329 LLNLGANTSGCNGAPLLPLLYIA--TNMAFNISMLRLMKISSAVVSSLVVMLSVPIAIYVLSLPLPYLPEGASLSPFFLF  406 (431)
Q Consensus       329 ~~g~~~~~~~c~~a~~~~llyl~--~~~~~n~~~~~l~k~~sA~~~sl~~~l~vPl~~~~fs~~~~~l~~gE~ls~~~li  406 (431)
                                  ......++|+.  .....+..+...+|+.++...++.. +..|+.+.+++..+    .||++++.+++
T Consensus       209 ------------~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~-~l~Pi~a~i~~~~~----l~E~~t~~~ii  271 (292)
T PRK11272        209 ------------LSGFLALGYLAVFGSIIAISAYMYLLRNVRPALATSYA-YVNPVVAVLLGTGL----GGETLSPIEWL  271 (292)
T ss_pred             ------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHH-HHHHHHHHHHHHHH----cCCCCcHHHHH
Confidence                        00111222322  2223334556677888888888865 67799999988655    49999999999


Q ss_pred             HHHHHHhhheeecCCCCC
Q 014092          407 GSVILLLGLTLYNLPQPA  424 (431)
Q Consensus       407 G~~lI~~Gv~lYn~~~~~  424 (431)
                      |.++++.|+++.+..+++
T Consensus       272 G~~lIi~gv~~~~~~~~~  289 (292)
T PRK11272        272 ALGVIVFAVVLVTLGKYL  289 (292)
T ss_pred             HHHHHHHHHHHHHHHHhh
Confidence            999999999998765543

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.78  E-value=1.2e-16  Score=158.40  Aligned_cols=274  Identities=14%  Similarity=0.049  Sum_probs=175.2

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHhccCCChhHHHHHH-HHHHHHHHHHHHHHHHHhccccccccccCCCchhhHHHHHHHH
Q 014092           95 IIISSAVTVTLAIANRVLYKLALVPMKQYPFFLAQI-TTFGYVVIYFSILYTRYLMGIVTDEMISLPKYRFLFIGMLEAL  173 (431)
Q Consensus        95 i~i~~~~~li~Gs~n~v~~K~~~~~~~~~Pffla~l-~~~~~~ll~~~il~~r~~~~~~~~~~~~~p~~~~~iiglld~~  173 (431)
                      .+.++..+++|| .|++..|...++++  |+.++.+ +.++. ++..+  +.+.+     + .++ .+++..+.+.+...
T Consensus         6 ~l~~l~a~~~Wg-~~~~~~k~~~~~~~--P~~~~~~R~~~a~-l~l~~--~~~~~-----~-~~~-~~~~~~~~~~l~~~   72 (295)
T PRK11689          6 TLIGLIAILLWS-TMVGLIRGVSESLG--PVGGAAMIYSVSG-LLLLL--TVGFP-----R-LRQ-FPKRYLLAGGLLFV   72 (295)
T ss_pred             hHHHHHHHHHHH-HHHHHHHHHHccCC--hHHHHHHHHHHHH-HHHHH--Hcccc-----c-ccc-ccHHHHHHHhHHHH
Confidence            445778888888 89999999998874  8888888 22332 22221  11111     1 111 12345556555544


Q ss_pred             -HHHHHHHhh----ccCCccHHHHHhhhhHHHHHHHHHHHhcCccchhHHHHHHHHhhheeEEeccCCCCC-Cc---ccc
Q 014092          174 -GVASGMAAA----AMLPGPAIPILSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVGVAVASGSNSG-QM---LSR  244 (431)
Q Consensus       174 -~~~l~~~g~----~~~~~~~~~IL~qs~i~~T~llS~~fLk~r~~~~qiiG~~lv~~GV~vv~~s~~~~~-~~---~~~  244 (431)
                       .+.+.+.|.    .++++...+++..+.++++++++++++|||++++|++|++++++|++++..++.+.+ .+   ...
T Consensus        73 ~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~  152 (295)
T PRK11689         73 SYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIA  152 (295)
T ss_pred             HHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhccc
Confidence             444555554    356778889999999999999999999999999999999999999988875432110 00   001


Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCccCceeehhhhhhHHHHHHHHHHHhhhccCCCCCCCchHhHhh
Q 014092          245 VDFLWPSMMIASSAFQAGASIIKEFIFDDAKKCLKGKSLDIFVVNSFGSGFQALFVLLFLPFLSNLKGIPFAELPLYLKS  324 (431)
Q Consensus       245 ~~~ig~~lillA~i~~A~s~V~~E~~f~~y~k~lk~~~~d~~~l~~w~~l~q~l~g~llLpi~~~~~g~~~~~~~~~~~~  324 (431)
                      ....|+++.++|++++|+.+++.|+.        + ++.|+...      ++...+..+++... .++.+..+.      
T Consensus       153 ~~~~G~~~~l~aa~~~A~~~v~~k~~--------~-~~~~~~~~------~~~~~~~~l~~~~~-~~~~~~~~~------  210 (295)
T PRK11689        153 SNPLSYGLAFIGAFIWAAYCNVTRKY--------A-RGKNGITL------FFILTALALWIKYF-LSPQPAMVF------  210 (295)
T ss_pred             cChHHHHHHHHHHHHHHHHHHHHhhc--------c-CCCCchhH------HHHHHHHHHHHHHH-HhcCccccC------
Confidence            23569999999999999999999862        1 23454422      12222222222221 111100000      


Q ss_pred             hhHhhhccCCCCCCCCCccHHHHHHHHH-HHHHHHHHHHHhcccchHHHHHHHHhHHHhhhHhhhcccCCCCCCCCCcHH
Q 014092          325 GAGCLLNLGANTSGCNGAPLLPLLYIAT-NMAFNISMLRLMKISSAVVSSLVVMLSVPIAIYVLSLPLPYLPEGASLSPF  403 (431)
Q Consensus       325 g~~c~~g~~~~~~~c~~a~~~~llyl~~-~~~~n~~~~~l~k~~sA~~~sl~~~l~vPl~~~~fs~~~~~l~~gE~ls~~  403 (431)
                                     +...+..++|... ....+.++...+|+.++...+... ...|+++.+++..+    .||++++.
T Consensus       211 ---------------~~~~~~~l~~~~~~t~~~~~l~~~al~~~~a~~~s~~~-~l~Pv~a~i~~~~~----lgE~~~~~  270 (295)
T PRK11689        211 ---------------SLPAIIKLLLAAAAMGFGYAAWNVGILHGNMTLLATAS-YFTPVLSAALAALL----LSTPLSFS  270 (295)
T ss_pred             ---------------CHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH-HhHHHHHHHHHHHH----hCCCCcHH
Confidence                           0011122233222 223344556778888999999865 67799999998765    49999999


Q ss_pred             HHHHHHHHHhhheeecCCCC
Q 014092          404 FLFGSVILLLGLTLYNLPQP  423 (431)
Q Consensus       404 ~liG~~lI~~Gv~lYn~~~~  423 (431)
                      +++|.++++.|+++....++
T Consensus       271 ~~iG~~lI~~gv~~~~~~~~  290 (295)
T PRK11689        271 FWQGVAMVTAGSLLCWLATR  290 (295)
T ss_pred             HHHHHHHHHHhHHHHhhhHh
Confidence            99999999999977755443

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.78  E-value=9.4e-17  Score=159.39  Aligned_cols=277  Identities=20%  Similarity=0.251  Sum_probs=174.9

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHhccCCChhHHHHHHHHHHHH-HHHHHHHHHHHhccccccccccCCCchhhHHHHHHHHH
Q 014092           96 IISSAVTVTLAIANRVLYKLALVPMKQYPFFLAQITTFGYV-VIYFSILYTRYLMGIVTDEMISLPKYRFLFIGMLEALG  174 (431)
Q Consensus        96 ~i~~~~~li~Gs~n~v~~K~~~~~~~~~Pffla~l~~~~~~-ll~~~il~~r~~~~~~~~~~~~~p~~~~~iiglld~~~  174 (431)
                      +..+++.++|| .|.+..|...++++  |+..+.+ ++... +....  +.+++         +.+++.....|++....
T Consensus         7 l~~l~~~~~Wg-~~~~~~k~~~~~~~--p~~~~~~-R~~~a~~~l~~--~~~~~---------~~~~~~~~~~g~~~~~~   71 (299)
T PRK11453          7 VLALLVVVVWG-LNFVVIKVGLHNMP--PLMLAGL-RFMLVAFPAIF--FVARP---------KVPLNLLLGYGLTISFG   71 (299)
T ss_pred             HHHHHHHHHHh-hhHHHHHHHHhcCC--HHHHHHH-HHHHHHHHHHH--HhcCC---------CCchHHHHHHHHHHHHH
Confidence            34677788888 89999999998774  7777777 44321 11111  11111         11223344557765544


Q ss_pred             HH-HHHHhhcc-CCccHHHHHhhhhHHHHHHHHHHHhcCccchhHHHHHHHHhhheeEEeccCCCCCCccccccchHHHH
Q 014092          175 VA-SGMAAAAM-LPGPAIPILSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVGVAVASGSNSGQMLSRVDFLWPSM  252 (431)
Q Consensus       175 ~~-l~~~g~~~-~~~~~~~IL~qs~i~~T~llS~~fLk~r~~~~qiiG~~lv~~GV~vv~~s~~~~~~~~~~~~~ig~~l  252 (431)
                      ++ +.+.+..+ .+++..+++.++.++++++++++++|||++++|++|++++++|+.++..++.+..    +....|+++
T Consensus        72 ~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~~----~~~~~G~~l  147 (299)
T PRK11453         72 QFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNGQ----HVAMLGFML  147 (299)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCCc----chhHHHHHH
Confidence            43 55667776 5888999999999999999999999999999999999999999988774322211    113569999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhccCCccCceeehhhhhhHHHHHHHH-HHHhhhccCCCCCCCchHhHhhhhHhhhc
Q 014092          253 MIASSAFQAGASIIKEFIFDDAKKCLKGKSLDIFVVNSFGSGFQALFVLL-FLPFLSNLKGIPFAELPLYLKSGAGCLLN  331 (431)
Q Consensus       253 illA~i~~A~s~V~~E~~f~~y~k~lk~~~~d~~~l~~w~~l~q~l~g~l-lLpi~~~~~g~~~~~~~~~~~~g~~c~~g  331 (431)
                      .++|++++|+.+++.++.-+++      ...+....+.    ++.+.+.+ ++......++ + .....    .+     
T Consensus       148 ~l~aal~~a~~~v~~~~~~~~~------~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~-~~~~~----~~-----  206 (299)
T PRK11453        148 TLAAAFSWACGNIFNKKIMSHS------TRPAVMSLVV----WSALIPIIPFFVASLILDG-S-ATMIH----SL-----  206 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHhccc------CccchhHHHH----HHHHHHHHHHHHHHHHhcC-c-hhhhh----hh-----
Confidence            9999999999999988632211      1122222223    44444322 1111111222 0 00000    00     


Q ss_pred             cCCCCCCCCCccHHHHHHHH---HHHHHHHHHHHHhcccchHHHHHHHHhHHHhhhHhhhcccCCCCCCCCCcHHHHHHH
Q 014092          332 LGANTSGCNGAPLLPLLYIA---TNMAFNISMLRLMKISSAVVSSLVVMLSVPIAIYVLSLPLPYLPEGASLSPFFLFGS  408 (431)
Q Consensus       332 ~~~~~~~c~~a~~~~llyl~---~~~~~n~~~~~l~k~~sA~~~sl~~~l~vPl~~~~fs~~~~~l~~gE~ls~~~liG~  408 (431)
                       .    .-+...+..++|+.   +.+.|. .+...+|+.++...+... ...|+.+.+++..+    .||++++.+++|.
T Consensus       207 -~----~~~~~~~~~l~~l~i~~t~~~~~-l~~~~l~~~~a~~~s~~~-~l~Pv~a~~~~~l~----lgE~~~~~~~iG~  275 (299)
T PRK11453        207 -V----TIDMTTILSLMYLAFVATIVGYG-IWGTLLGRYETWRVAPLS-LLVPVVGLASAALL----LDERLTGLQFLGA  275 (299)
T ss_pred             -c----cCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCHHHHHHHH-HHHHHHHHHHHHHH----hCCCccHHHHHHH
Confidence             0    00011222344433   223333 445566777888877754 57799999998655    4999999999999


Q ss_pred             HHHHhhheeecCCCC
Q 014092          409 VILLLGLTLYNLPQP  423 (431)
Q Consensus       409 ~lI~~Gv~lYn~~~~  423 (431)
                      ++++.|+++-..+++
T Consensus       276 ~lI~~gv~l~~~~~~  290 (299)
T PRK11453        276 VLIMAGLYINVFGLR  290 (299)
T ss_pred             HHHHHHHHHHhcchh
Confidence            999999998766655

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.72  E-value=2.1e-15  Score=145.54  Aligned_cols=256  Identities=15%  Similarity=0.168  Sum_probs=167.5

Q ss_pred             hhhhHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCchhhHHHHHH-HHHHHHHHHhhc
Q 014092          105 LAIANRVLYKLALVPMKQYPFFLAQITTFGYVVIYFSILYTRYLMGIVTDEMISLPKYRFLFIGMLE-ALGVASGMAAAA  183 (431)
Q Consensus       105 ~Gs~n~v~~K~~~~~~~~~Pffla~l~~~~~~ll~~~il~~r~~~~~~~~~~~~~p~~~~~iiglld-~~~~~l~~~g~~  183 (431)
                      || .+.+..|...+...  |.+...+.++....+...... +++   .+    +.+++++++.|.+. .+.+.+.+.|..
T Consensus         1 Wg-~~~~~~k~~~~~~~--~~~~~~~~r~~~~~l~l~~~~-~~~---~~----~~~~~~~~~~~~~~~~l~~~~~~~a~~   69 (260)
T TIGR00950         1 WG-TTGVVIGQYLEGQV--PLYFAVFRRLIFALLLLLPLL-RRR---PP----LKRLLRLLLLGALQIGVFYVLYFVAVK   69 (260)
T ss_pred             Cc-chHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHH-Hhc---cC----HhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56 78899999887632  334444433332122221111 211   01    11223466666665 667789999999


Q ss_pred             cCCccHHHHHhhhhHHHHHHHHHHHhcCccchhHHHHHHHHhhheeEEeccCCCCCCccccccchHHHHHHHHHHHHHHH
Q 014092          184 MLPGPAIPILSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVGVAVASGSNSGQMLSRVDFLWPSMMIASSAFQAGA  263 (431)
Q Consensus       184 ~~~~~~~~IL~qs~i~~T~llS~~fLk~r~~~~qiiG~~lv~~GV~vv~~s~~~~~~~~~~~~~ig~~lillA~i~~A~s  263 (431)
                      +++++...++.++.++++++++.+++|||++++|++|++++++|+.++..++.. +     ....|+.+.++|++++|+.
T Consensus        70 ~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~-~-----~~~~G~~~~l~a~~~~a~~  143 (260)
T TIGR00950        70 RLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNL-S-----INPAGLLLGLGSGISFALG  143 (260)
T ss_pred             hcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCcc-c-----ccHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999887644321 1     1457899999999999999


Q ss_pred             HHHHHHhhhhhhhhccCCccCceeehhhhhhHHHHHHHH-HHHhhhccCCCCCCCchHhHhhhhHhhhccCCCCCCCCCc
Q 014092          264 SIIKEFIFDDAKKCLKGKSLDIFVVNSFGSGFQALFVLL-FLPFLSNLKGIPFAELPLYLKSGAGCLLNLGANTSGCNGA  342 (431)
Q Consensus       264 ~V~~E~~f~~y~k~lk~~~~d~~~l~~w~~l~q~l~g~l-lLpi~~~~~g~~~~~~~~~~~~g~~c~~g~~~~~~~c~~a  342 (431)
                      +++.++..+       +.+.+....+.    ++..++.+ ++|.....+. +. ..     +.                .
T Consensus       144 ~~~~k~~~~-------~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~-~~-~~-----~~----------------~  189 (260)
T TIGR00950       144 TVLYKRLVK-------KEGPELLQFTG----WVLLLGALLLLPFAWFLGP-NP-QA-----LS----------------L  189 (260)
T ss_pred             HHHHhHHhh-------cCCchHHHHHH----HHHHHHHHHHHHHHHhcCC-CC-Cc-----ch----------------H
Confidence            999886332       11222333443    34444433 3344332211 10 10     00                0


Q ss_pred             cHHHHHHHH--HHHHHHHHHHHHhcccchHHHHHHHHhHHHhhhHhhhcccCCCCCCCCCcHHHHHHHHHHHhhhe
Q 014092          343 PLLPLLYIA--TNMAFNISMLRLMKISSAVVSSLVVMLSVPIAIYVLSLPLPYLPEGASLSPFFLFGSVILLLGLT  416 (431)
Q Consensus       343 ~~~~llyl~--~~~~~n~~~~~l~k~~sA~~~sl~~~l~vPl~~~~fs~~~~~l~~gE~ls~~~liG~~lI~~Gv~  416 (431)
                      ....++++.  .....+..+...+|+.++...+... ...|+.+.+++..+    .+|++++.+++|.++++.|+.
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~-~~~pv~~~ll~~~~----~~E~~~~~~~~G~~li~~g~~  260 (260)
T TIGR00950       190 QWGALLYLGLIGTALAYFLWNKGLTLVDPSAASILA-LAEPLVALLLGLLI----LGETLSLPQLIGGALIIAAVL  260 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHH-HHHHHHHHHHHHHH----hCCCCCHHHHHHHHHHHHhcC
Confidence            111122222  2233444556778899998888865 56699999988655    499999999999999999974

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.71  E-value=1.6e-15  Score=150.48  Aligned_cols=279  Identities=9%  Similarity=0.043  Sum_probs=169.9

Q ss_pred             hHHHHHHHHHHHHhhhhHHHHHHHHhccCCChhHHHHHH-HHHHHHHHHHHHHHHHHhccccccccccCCCchhhHHHHH
Q 014092           92 SQIIIISSAVTVTLAIANRVLYKLALVPMKQYPFFLAQI-TTFGYVVIYFSILYTRYLMGIVTDEMISLPKYRFLFIGML  170 (431)
Q Consensus        92 ~~~i~i~~~~~li~Gs~n~v~~K~~~~~~~~~Pffla~l-~~~~~~ll~~~il~~r~~~~~~~~~~~~~p~~~~~iigll  170 (431)
                      ...++..++..++|| .+.+..|.. .+.+  |.-+... +.++.+++ ..+.+.+.+....+++.++.+.+...+.+.+
T Consensus         7 ~~g~~~~l~a~~~wg-~~~~~~k~~-~~~~--~~~~~~~R~~~a~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (296)
T PRK15430          7 RQGVLLALAAYFIWG-IAPAYFKLI-YYVP--ADEILTHRVIWSFFFM-VVLMSICRQWSYLKTLIQTPQKIFMLAVSAV   81 (296)
T ss_pred             hhHHHHHHHHHHHHH-HHHHHHHHh-cCCC--HHHHHHHHHHHHHHHH-HHHHHHHccHHHHHHHHcCHHHHHHHHHHHH
Confidence            355666778888888 777777986 4443  6655555 33333222 2222222110000000001111122334444


Q ss_pred             -HHHHHHHHHHhhccCCccHHHHHhhhhHHHHHHHHHHHhcCccchhHHHHHHHHhhheeEEeccCCCCCCccccccchH
Q 014092          171 -EALGVASGMAAAAMLPGPAIPILSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVGVAVASGSNSGQMLSRVDFLW  249 (431)
Q Consensus       171 -d~~~~~l~~~g~~~~~~~~~~IL~qs~i~~T~llS~~fLk~r~~~~qiiG~~lv~~GV~vv~~s~~~~~~~~~~~~~ig  249 (431)
                       -..++.+.+.|..++|++..+++..+.++++++++++++|||.+++||+|++++++|++++..++++        .   
T Consensus        82 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~~--------~---  150 (296)
T PRK15430         82 LIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFGS--------L---  150 (296)
T ss_pred             HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcCC--------c---
Confidence             4667889999999999999999999999999999999999999999999999999999987643211        0   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCccCceeehhhhhhHHHHHHHHHHHhhhccCCCCCCCchHhHhhhhHhh
Q 014092          250 PSMMIASSAFQAGASIIKEFIFDDAKKCLKGKSLDIFVVNSFGSGFQALFVLLFLPFLSNLKGIPFAELPLYLKSGAGCL  329 (431)
Q Consensus       250 ~~lillA~i~~A~s~V~~E~~f~~y~k~lk~~~~d~~~l~~w~~l~q~l~g~llLpi~~~~~g~~~~~~~~~~~~g~~c~  329 (431)
                      ..+.++|++++|+.+++.|+.-       ++...+..    ....++..++.+.+....  +. +..+..   .+.+   
T Consensus       151 ~~~~l~aa~~~a~~~i~~r~~~-------~~~~~~~~----~~~~~~~~~~~~~~~~~~--~~-~~~~~~---~~~~---  210 (296)
T PRK15430        151 PIIALGLAFSFAFYGLVRKKIA-------VEAQTGML----IETMWLLPVAAIYLFAIA--DS-STSHMG---QNPM---  210 (296)
T ss_pred             cHHHHHHHHHHHHHHHHHHhcC-------CCCchhHH----HHHHHHHHHHHHHHHHHc--cC-Cccccc---CCcH---
Confidence            1457779999999999988511       11111111    122345544433211111  10 000000   0000   


Q ss_pred             hccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHhHHHhhhHhhhcccCCCCCCCCCcHHHHHHHH
Q 014092          330 LNLGANTSGCNGAPLLPLLYIATNMAFNISMLRLMKISSAVVSSLVVMLSVPIAIYVLSLPLPYLPEGASLSPFFLFGSV  409 (431)
Q Consensus       330 ~g~~~~~~~c~~a~~~~llyl~~~~~~n~~~~~l~k~~sA~~~sl~~~l~vPl~~~~fs~~~~~l~~gE~ls~~~liG~~  409 (431)
                                .....++..-+ .....+.++....|+.++...++.. +..|+.+.+++..+    .||++++.+++|.+
T Consensus       211 ----------~~~~~~~~~g~-~t~i~~~~~~~a~~~~~a~~~s~~~-~l~Pv~a~~~g~l~----l~E~~~~~~~~G~~  274 (296)
T PRK15430        211 ----------SLNLLLIAAGI-VTTVPLLCFTAAATRLRLSTLGFFQ-YIGPTLMFLLAVTF----YGEKPGADKMVTFA  274 (296)
T ss_pred             ----------HHHHHHHHHHH-HHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHHHHH----HcCCCCHHHHHHHH
Confidence                      00011111112 2223444567788999999999975 67799999888654    49999999999999


Q ss_pred             HHHhhheeecCCC
Q 014092          410 ILLLGLTLYNLPQ  422 (431)
Q Consensus       410 lI~~Gv~lYn~~~  422 (431)
                      +++.|+.++....
T Consensus       275 lI~~~~~v~~~~~  287 (296)
T PRK15430        275 FIWVALAIFVMDA  287 (296)
T ss_pred             HHHHHHHHHHHHH
Confidence            9988888776554

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.65  E-value=8.7e-14  Score=137.83  Aligned_cols=273  Identities=14%  Similarity=0.036  Sum_probs=175.8

Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHhccCCChhHHHHHH-HHHHHHHHHHHHHHHHHhccccccccccCCCchhhHHHHHH
Q 014092           93 QIIIISSAVTVTLAIANRVLYKLALVPMKQYPFFLAQI-TTFGYVVIYFSILYTRYLMGIVTDEMISLPKYRFLFIGMLE  171 (431)
Q Consensus        93 ~~i~i~~~~~li~Gs~n~v~~K~~~~~~~~~Pffla~l-~~~~~~ll~~~il~~r~~~~~~~~~~~~~p~~~~~iiglld  171 (431)
                      ..+.++++.++.|+ .+.++.|...++++  |+.+..+ +.++. ++...+ ..+.+ .+.+++    .++..+..|++.
T Consensus        12 ~~~~~~~la~~~~~-~~~~~~K~~~~~~~--~~~~~~~R~~~a~-l~l~~~-~~~~~-~~~~~~----~~~~~~~~g~~~   81 (293)
T PRK10532         12 LPILLLLIAMASIQ-SGASLAKSLFPLVG--APGVTALRLALGT-LILIAI-FKPWR-LRFAKE----QRLPLLFYGVSL   81 (293)
T ss_pred             hHHHHHHHHHHHHH-hhHHHHHHHHHHcC--HHHHHHHHHHHHH-HHHHHH-HhHHh-ccCCHH----HHHHHHHHHHHH
Confidence            44667888888888 77778999998764  6676666 33332 222222 11111 111111    123455678888


Q ss_pred             HHHHHHHHHhhccCCccHHHHHhhhhHHHHHHHHHHHhcCccchhHHHHHHHHhhheeEEeccCCCCCCccccccchHHH
Q 014092          172 ALGVASGMAAAAMLPGPAIPILSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVGVAVASGSNSGQMLSRVDFLWPS  251 (431)
Q Consensus       172 ~~~~~l~~~g~~~~~~~~~~IL~qs~i~~T~llS~~fLk~r~~~~qiiG~~lv~~GV~vv~~s~~~~~~~~~~~~~ig~~  251 (431)
                      ...+.+.+++..++|.+...++..+.++++++++.    ||...  +.++.++++|+.++...+.+.+    +....|++
T Consensus        82 ~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~~--~~~~~i~~~Gv~li~~~~~~~~----~~~~~G~l  151 (293)
T PRK10532         82 GGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPVD--FVWVVLAVLGLWFLLPLGQDVS----HVDLTGAA  151 (293)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChHH--HHHHHHHHHHHheeeecCCCcc----cCChHHHH
Confidence            77888899999999999999999999999998873    55544  4566788999888764332211    11356999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhccCCccCceeehhhhhhHHHHHHHH-HHHhhhccCCCCCCCchHhHhhhhHhhh
Q 014092          252 MMIASSAFQAGASIIKEFIFDDAKKCLKGKSLDIFVVNSFGSGFQALFVLL-FLPFLSNLKGIPFAELPLYLKSGAGCLL  330 (431)
Q Consensus       252 lillA~i~~A~s~V~~E~~f~~y~k~lk~~~~d~~~l~~w~~l~q~l~g~l-lLpi~~~~~g~~~~~~~~~~~~g~~c~~  330 (431)
                      +.++|++++|+.+++-++.-         ++.++... .    ++.+++.+ ++|.....++    +..   .+      
T Consensus       152 l~l~aa~~~a~~~v~~r~~~---------~~~~~~~~-~----~~~~~~~~~l~~~~~~~~~----~~~---~~------  204 (293)
T PRK10532        152 LALGAGACWAIYILSGQRAG---------AEHGPATV-A----IGSLIAALIFVPIGALQAG----EAL---WH------  204 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHh---------ccCCchHH-H----HHHHHHHHHHHHHHHHccC----ccc---CC------
Confidence            99999999999999977522         23444332 3    33344332 3444321111    000   00      


Q ss_pred             ccCCCCCCCCCccHHHHHHHH--HHHHHHHHHHHHhcccchHHHHHHHHhHHHhhhHhhhcccCCCCCCCCCcHHHHHHH
Q 014092          331 NLGANTSGCNGAPLLPLLYIA--TNMAFNISMLRLMKISSAVVSSLVVMLSVPIAIYVLSLPLPYLPEGASLSPFFLFGS  408 (431)
Q Consensus       331 g~~~~~~~c~~a~~~~llyl~--~~~~~n~~~~~l~k~~sA~~~sl~~~l~vPl~~~~fs~~~~~l~~gE~ls~~~liG~  408 (431)
                                .......+|+.  .....+..+...+|+.++...++.. ...|+++.+++..+    .||++++.+++|.
T Consensus       205 ----------~~~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~-~l~Pv~a~l~~~l~----lgE~~~~~~~iG~  269 (293)
T PRK10532        205 ----------WSILPLGLAVAILSTALPYSLEMIALTRLPTRTFGTLM-SMEPALAAVSGMIF----LGETLTLIQWLAL  269 (293)
T ss_pred             ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHH-HhHHHHHHHHHHHH----hCCCCcHHHHHHH
Confidence                      00011122322  2333444556788899999999875 67799999998765    4999999999999


Q ss_pred             HHHHhhheeecCCCCCccc
Q 014092          409 VILLLGLTLYNLPQPAKRS  427 (431)
Q Consensus       409 ~lI~~Gv~lYn~~~~~~~~  427 (431)
                      ++++.|++.+....+++.+
T Consensus       270 ~lIl~~~~~~~~~~~~~~~  288 (293)
T PRK10532        270 GAIIAASMGSTLTIRREPK  288 (293)
T ss_pred             HHHHHHHHHHHhcCCCCCC
Confidence            9999999999777655433

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=99.65  E-value=4e-16  Score=149.19  Aligned_cols=233  Identities=16%  Similarity=0.213  Sum_probs=160.0

Q ss_pred             ccCCCchhhHH-HHHH---HHHHHHHHHhhccCCccHHHHHhhhhHHHHHHHHHHHhcCccchhHHHHHHHHhhheeEEe
Q 014092          157 ISLPKYRFLFI-GMLE---ALGVASGMAAAAMLPGPAIPILSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVGVAV  232 (431)
Q Consensus       157 ~~~p~~~~~ii-glld---~~~~~l~~~g~~~~~~~~~~IL~qs~i~~T~llS~~fLk~r~~~~qiiG~~lv~~GV~vv~  232 (431)
                      .+.|.+.++++ +++.   +++|+.+.+.   +|.+++.|+|+....-+|.++++++||||+.+|+.+++++.+|++++.
T Consensus        60 ~kiplk~Y~i~V~mFF~vnv~NN~al~f~---I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcT  136 (330)
T KOG1583|consen   60 PKIPLKDYAITVAMFFIVNVTNNYALKFN---IPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICT  136 (330)
T ss_pred             CCCchhhhheehheeeeeeeeccceeeec---ccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEE
Confidence            45666666554 4443   5566655554   899999999999999999999999999999999999999999999985


Q ss_pred             ccC-CC---------CCCcccc--ccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCccCceeehhhhhhHHHHHH
Q 014092          233 ASG-SN---------SGQMLSR--VDFLWPSMMIASSAFQAGASIIKEFIFDDAKKCLKGKSLDIFVVNSFGSGFQALFV  300 (431)
Q Consensus       233 ~s~-~~---------~~~~~~~--~~~ig~~lillA~i~~A~s~V~~E~~f~~y~k~lk~~~~d~~~l~~w~~l~q~l~g  300 (431)
                      ... .+         .+++.++  .-.+|+.+..+|.+..|..++|||..|+||+|+.+   ...+        |...+ 
T Consensus       137 l~s~~d~~~~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh~~---EalF--------ytH~L-  204 (330)
T KOG1583|consen  137 LFSSKDGRSKLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQKYGKHWK---EALF--------YTHFL-  204 (330)
T ss_pred             eecCcchhhhhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChH---HHHH--------HHHHh-
Confidence            421 11         1111111  12467889999999999999999999999987653   3333        34433 


Q ss_pred             HHHHHhhhccCCCCCCCchHhHhhhhHhhhccCC-CCCCCCCccHHHHHHHHHHHHHHHHHH----HHhcccchHHHHHH
Q 014092          301 LLFLPFLSNLKGIPFAELPLYLKSGAGCLLNLGA-NTSGCNGAPLLPLLYIATNMAFNISML----RLMKISSAVVSSLV  375 (431)
Q Consensus       301 ~llLpi~~~~~g~~~~~~~~~~~~g~~c~~g~~~-~~~~c~~a~~~~llyl~~~~~~n~~~~----~l~k~~sA~~~sl~  375 (431)
                        -+|.+..+.    +|+.+    .|........ .++..+..-...+.|+.+|...+..|.    .+..+-++.+.+++
T Consensus       205 --sLP~Flf~~----~div~----~~~~~~~se~~~~p~~g~~vP~~~~yLl~n~L~Qy~CikgVy~L~te~~sLTVTlv  274 (330)
T KOG1583|consen  205 --SLPLFLFMG----DDIVS----HWRLAFKSESYLIPLLGFKVPSMWVYLLFNVLTQYFCIKGVYILTTETSSLTVTLV  274 (330)
T ss_pred             --ccchHHHhc----chHHH----HHHHHhcCcceeccccCccccHHHHHHHHHHHHHHHHHHhhhhhhceecceEEEEe
Confidence              455554432    33332    2222221111 112222222346789999998888874    35566677777776


Q ss_pred             HHhHHHhhhHhhhcccCCCCCCCCCcHHHHHHHHHHHhhheeec
Q 014092          376 VMLSVPIAIYVLSLPLPYLPEGASLSPFFLFGSVILLLGLTLYN  419 (431)
Q Consensus       376 ~~l~vPl~~~~fs~~~~~l~~gE~ls~~~liG~~lI~~Gv~lYn  419 (431)
                      .++| =....++|+..    ..++++++.++|.++|..|.++|.
T Consensus       275 ltlR-KFvSLl~Siiy----F~Npft~~h~lGa~lVF~Gt~~fa  313 (330)
T KOG1583|consen  275 LTLR-KFVSLLFSIIY----FENPFTPWHWLGAALVFFGTLLFA  313 (330)
T ss_pred             eeHH-HHHHHhheeeE----ecCCCCHHHHHHHHHHHHHHHHHH
Confidence            6666 34555566543    389999999999999999999994

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=99.60  E-value=1.2e-14  Score=144.69  Aligned_cols=293  Identities=19%  Similarity=0.246  Sum_probs=199.3

Q ss_pred             HHHHHHHhhhhH---HHHHHHHhcc-CCChhHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCchhhHHHHHHHH
Q 014092           98 SSAVTVTLAIAN---RVLYKLALVP-MKQYPFFLAQITTFGYVVIYFSILYTRYLMGIVTDEMISLPKYRFLFIGMLEAL  173 (431)
Q Consensus        98 ~~~~~li~Gs~n---~v~~K~~~~~-~~~~Pffla~l~~~~~~ll~~~il~~r~~~~~~~~~~~~~p~~~~~iiglld~~  173 (431)
                      ..+.+..|-..|   .+.-|..... -+++|.+++.++.+.-.+.....-..+...+  .+-..+.+++..+-+|++...
T Consensus        18 ~~~~~~~w~~~~v~~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~--~~~~~~~~~~~llpl~~~~~~   95 (316)
T KOG1441|consen   18 IGIAFAIWYVLSVGVIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPP--SKISSKLPLRTLLPLGLVFCI   95 (316)
T ss_pred             HHHHHHHHhhhheeeEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCC--CccccccchHHHHHHHHHHHH
Confidence            444455555555   5666777764 4568999999955543222221111111110  011123456678888999999


Q ss_pred             HHHHHHHhhccCCccHHHHHhhhhHHHHHHHHHHHhcCccchhHHHHHHHHhhheeEEeccCCCCCCccccccchHHHHH
Q 014092          174 GVASGMAAAAMLPGPAIPILSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVGVAVASGSNSGQMLSRVDFLWPSMM  253 (431)
Q Consensus       174 ~~~l~~~g~~~~~~~~~~IL~qs~i~~T~llS~~fLk~r~~~~qiiG~~lv~~GV~vv~~s~~~~~~~~~~~~~ig~~li  253 (431)
                      +..+.+.++.++|.+..|++..+.+++|.++++++.+|++++.-+..++.+..||++....+.+    +   .+.|.+..
T Consensus        96 ~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~~----f---n~~G~i~a  168 (316)
T KOG1441|consen   96 SHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTELS----F---NLFGFISA  168 (316)
T ss_pred             HHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeecccc----c---cHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999998763322    1   46788999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhccCCccCceeehhhhhhHHHHHHHH-HH-HhhhccCCCCCCCchHhHhhhhHhhhc
Q 014092          254 IASSAFQAGASIIKEFIFDDAKKCLKGKSLDIFVVNSFGSGFQALFVLL-FL-PFLSNLKGIPFAELPLYLKSGAGCLLN  331 (431)
Q Consensus       254 llA~i~~A~s~V~~E~~f~~y~k~lk~~~~d~~~l~~w~~l~q~l~g~l-lL-pi~~~~~g~~~~~~~~~~~~g~~c~~g  331 (431)
                      +.|.+..+.++++.|+.+.+     |++++|.+.+-.    ++...... ++ |.....++...            +  +
T Consensus       169 ~~s~~~~al~~I~~~~ll~~-----~~~~~~~~~ll~----y~ap~s~~~Ll~P~~~~~~~~~~------------~--~  225 (316)
T KOG1441|consen  169 MISNLAFALRNILSKKLLTS-----KGESLNSMNLLY----YTAPISLIFLLIPFLDYVEGNKF------------V--G  225 (316)
T ss_pred             HHHHHHHHHHHHHHHHhhhc-----cccccCchHHHH----HhhhHHHHHHhcchHhhhcccce------------e--e
Confidence            99999999999999976632     345677776665    44444322 44 65544443110            0  0


Q ss_pred             cCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHhHHHhhhHhhhcccCCCCCCCCCcHHHHHHHHHH
Q 014092          332 LGANTSGCNGAPLLPLLYIATNMAFNISMLRLMKISSAVVSSLVVMLSVPIAIYVLSLPLPYLPEGASLSPFFLFGSVIL  411 (431)
Q Consensus       332 ~~~~~~~c~~a~~~~llyl~~~~~~n~~~~~l~k~~sA~~~sl~~~l~vPl~~~~fs~~~~~l~~gE~ls~~~liG~~lI  411 (431)
                      ........+  ......--++..++|...+.++.+.||++.++...+.. ..+++.+..+    .+|++++.+..|.++-
T Consensus       226 ~~~~~~~~~--~~~~~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~-~~vi~~s~~i----F~~pvt~~n~~G~~ia  298 (316)
T KOG1441|consen  226 FLTAPWFVT--FLILLLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKR-IVVIVVSWLI----FGNPVTFLNALGYAIA  298 (316)
T ss_pred             eeccccchh--hHHHHHHHHHHHHHHHHHHHHHcccCchhhhhhccceE-EEEEEeEeee----ecCCCchhhHHHHHHH
Confidence            000000111  11111111455678999999999999999999876542 3333344322    2779999999999999


Q ss_pred             HhhheeecCCCCCccccc
Q 014092          412 LLGLTLYNLPQPAKRSSK  429 (431)
Q Consensus       412 ~~Gv~lYn~~~~~~~~~~  429 (431)
                      ++|+++|+..+.+++++|
T Consensus       299 i~Gv~~Y~~~k~~~~~~~  316 (316)
T KOG1441|consen  299 ILGVFLYSRAKLKEKKGK  316 (316)
T ss_pred             HHHHHHHHHHhhhhhccC
Confidence            999999998887766553

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.55  E-value=4.7e-13  Score=131.66  Aligned_cols=216  Identities=15%  Similarity=0.035  Sum_probs=137.8

Q ss_pred             chhhHH-HHHHHHHHHHHHHhhccCCccHHHHHhhhhHHHHHHHHHHHhcCccchhHHHHHHHHhhheeEEeccCCCCCC
Q 014092          162 YRFLFI-GMLEALGVASGMAAAAMLPGPAIPILSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVGVAVASGSNSGQ  240 (431)
Q Consensus       162 ~~~~ii-glld~~~~~l~~~g~~~~~~~~~~IL~qs~i~~T~llS~~fLk~r~~~~qiiG~~lv~~GV~vv~~s~~~~~~  240 (431)
                      +.+.+. +........+.+.|+.+.+.+..+++..+.++++++++++++|||++++||+|++++++|+.++..++.... 
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~~~-  141 (281)
T TIGR03340        63 WLLLAISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFAQH-  141 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccccccc-
Confidence            344444 455677888999999999999999999999999999999999999999999999999999988765432111 


Q ss_pred             ccccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCccCceeehhhhhhHHHHHH-HHHHHhhhccCCCCCCCch
Q 014092          241 MLSRVDFLWPSMMIASSAFQAGASIIKEFIFDDAKKCLKGKSLDIFVVNSFGSGFQALFV-LLFLPFLSNLKGIPFAELP  319 (431)
Q Consensus       241 ~~~~~~~ig~~lillA~i~~A~s~V~~E~~f~~y~k~lk~~~~d~~~l~~w~~l~q~l~g-~llLpi~~~~~g~~~~~~~  319 (431)
                           ...|..+.+++++++|+.+++.|+.         .++.++.....+...++.+.+ .++.+.....+.   ....
T Consensus       142 -----~~~g~~~~l~aal~~a~~~i~~k~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~  204 (281)
T TIGR03340       142 -----RRKAYAWALAAALGTAIYSLSDKAA---------ALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHG---RSMF  204 (281)
T ss_pred             -----chhHHHHHHHHHHHHHHhhhhcccc---------ccchhcccccHHHHHHHHHHHHHHHHHHHHHHhc---cchh
Confidence                 2346678899999999999987642         112333221122122333332 111111100011   0000


Q ss_pred             HhHhhhhHhhhccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHhHHHhhhHhhhcccCCCCCCCC
Q 014092          320 LYLKSGAGCLLNLGANTSGCNGAPLLPLLYIATNMAFNISMLRLMKISSAVVSSLVVMLSVPIAIYVLSLPLPYLPEGAS  399 (431)
Q Consensus       320 ~~~~~g~~c~~g~~~~~~~c~~a~~~~llyl~~~~~~n~~~~~l~k~~sA~~~sl~~~l~vPl~~~~fs~~~~~l~~gE~  399 (431)
                      ..   ..             ......+...+.. ..-+..+....|+.++...+... ...|+.+.+++..+    .||+
T Consensus       205 ~~---~~-------------~~~~~~~~~~~~s-~l~~~l~~~al~~~~a~~~~~~~-~l~pv~a~l~g~~~----lgE~  262 (281)
T TIGR03340       205 PY---AR-------------QILPSATLGGLMI-GGAYALVLWAMTRLPVATVVALR-NTSIVFAVVLGIWF----LNER  262 (281)
T ss_pred             hh---HH-------------HHHHHHHHHHHHH-HHHHHHHHHHHhhCCceEEEeec-ccHHHHHHHHHHHH----hCCC
Confidence            00   00             0001111112222 22333445666777776666644 45689988887654    4999


Q ss_pred             CcHHHHHHHHHHHhhhee
Q 014092          400 LSPFFLFGSVILLLGLTL  417 (431)
Q Consensus       400 ls~~~liG~~lI~~Gv~l  417 (431)
                      +++.+++|.++++.|+++
T Consensus       263 ~~~~~~iG~~lil~Gv~l  280 (281)
T TIGR03340       263 WYLTRLMGVCIIVAGLVV  280 (281)
T ss_pred             ccHHHHHHHHHHHHhHHh
Confidence            999999999999999875

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=99.50  E-value=1.7e-11  Score=118.69  Aligned_cols=277  Identities=21%  Similarity=0.251  Sum_probs=165.9

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCchhhHHHH-HHHHH
Q 014092           96 IISSAVTVTLAIANRVLYKLALVPMKQYPFFLAQITTFGYVVIYFSILYTRYLMGIVTDEMISLPKYRFLFIGM-LEALG  174 (431)
Q Consensus        96 ~i~~~~~li~Gs~n~v~~K~~~~~~~~~Pffla~l~~~~~~ll~~~il~~r~~~~~~~~~~~~~p~~~~~iigl-ld~~~  174 (431)
                      ...++..+.|+ .+....|...+.  +.|.+.....++....+.. ....+...  ..+...+.+++...+.+. .....
T Consensus        10 ~~~l~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~   83 (292)
T COG0697          10 LALLLWGLLWG-LSFIALKLAVES--LDPFLFAAALRFLIAALLL-LPLLLLEP--RGLRPALRPWLLLLLLALLGLALP   83 (292)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHhcc--cCChHHHHHHHHHHHHHHH-HHHHHhhc--ccccccccchHHHHHHHHHHHHHH
Confidence            33444446666 677777777765  2344554443333212111 11111111  001111112234445544 45667


Q ss_pred             HHHHHHhhccCCccHHHHHhhhhHHHHHHHHH-HHhcCccchhHHHHHHHHhhheeEEeccCCCCCCccccccchHHHHH
Q 014092          175 VASGMAAAAMLPGPAIPILSQTFLVWQLGFSA-VLLGKKFSVTQIAGCLLVATGVGVAVASGSNSGQMLSRVDFLWPSMM  253 (431)
Q Consensus       175 ~~l~~~g~~~~~~~~~~IL~qs~i~~T~llS~-~fLk~r~~~~qiiG~~lv~~GV~vv~~s~~~~~~~~~~~~~ig~~li  253 (431)
                      ..+.+.+..+++++...++..+.++++.+++. +++|||.+++++.|.+++++|++++..++......    ...|+.+.
T Consensus        84 ~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~----~~~g~~~~  159 (292)
T COG0697          84 FLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGIL----SLLGLLLA  159 (292)
T ss_pred             HHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhH----HHHHHHHH
Confidence            78888889999999999999999999999997 77799999999999999999999998765543210    36789999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhccCCccCceeehhhhhhHHHHHHHHHHHhhhccCCCCCCCchHhHhhhhHhhhccC
Q 014092          254 IASSAFQAGASIIKEFIFDDAKKCLKGKSLDIFVVNSFGSGFQALFVLLFLPFLSNLKGIPFAELPLYLKSGAGCLLNLG  333 (431)
Q Consensus       254 llA~i~~A~s~V~~E~~f~~y~k~lk~~~~d~~~l~~w~~l~q~l~g~llLpi~~~~~g~~~~~~~~~~~~g~~c~~g~~  333 (431)
                      +++++++|+.+++.|+..          +.++......   ++.+ +..++.........  + .+.. ...+       
T Consensus       160 l~a~~~~a~~~~~~~~~~----------~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~--~-~~~~-~~~~-------  214 (292)
T COG0697         160 LAAALLWALYTALVKRLS----------RLGPVTLALL---LQLL-LALLLLLLFFLSGF--G-APIL-SRAW-------  214 (292)
T ss_pred             HHHHHHHHHHHHHHHHhc----------CCChHHHHHH---HHHH-HHHHHHHHHHhccc--c-ccCC-HHHH-------
Confidence            999999999999998532          2333323221   3333 11111111111110  0 0000 0000       


Q ss_pred             CCCCCCCCccHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHhHHHhhhHhhhcccCCCCCCCCCcHHHHHHHHHHHh
Q 014092          334 ANTSGCNGAPLLPLLYIATNMAFNISMLRLMKISSAVVSSLVVMLSVPIAIYVLSLPLPYLPEGASLSPFFLFGSVILLL  413 (431)
Q Consensus       334 ~~~~~c~~a~~~~llyl~~~~~~n~~~~~l~k~~sA~~~sl~~~l~vPl~~~~fs~~~~~l~~gE~ls~~~liG~~lI~~  413 (431)
                              ........+...+++ .......++.++...+... ...|+...+++..+    .+|+++..+++|.++++.
T Consensus       215 --------~~~~~~g~~~~~i~~-~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~l~----~~e~~~~~~~~G~~li~~  280 (292)
T COG0697         215 --------LLLLYLGVFSTGLAY-LLWYYALRLLGASLVALLS-LLEPVFAALLGVLL----LGEPLSPAQLLGAALVVL  280 (292)
T ss_pred             --------HHHHHHHHHHHHHHH-HHHHHHHHhcCchHHHHHH-HHHHHHHHHHHHHH----hCCCCcHHHHHHHHHHHH
Confidence                    011111112222233 3445566777777777654 45577777755443    499999999999999999


Q ss_pred             hheeecCC
Q 014092          414 GLTLYNLP  421 (431)
Q Consensus       414 Gv~lYn~~  421 (431)
                      |+++.+.+
T Consensus       281 g~~l~~~~  288 (292)
T COG0697         281 GVLLASLR  288 (292)
T ss_pred             HHHHHhcc
Confidence            99999877

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=99.48  E-value=1.2e-12  Score=130.17  Aligned_cols=228  Identities=20%  Similarity=0.266  Sum_probs=158.3

Q ss_pred             HHHHHHHHHHHHhhccCCccHHHHHhhhhHHHHHHHHHHHhcCccchhHHHHHHHHhhheeEEeccCCCCC-Cccccccc
Q 014092          169 MLEALGVASGMAAAAMLPGPAIPILSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVGVAVASGSNSG-QMLSRVDF  247 (431)
Q Consensus       169 lld~~~~~l~~~g~~~~~~~~~~IL~qs~i~~T~llS~~fLk~r~~~~qiiG~~lv~~GV~vv~~s~~~~~-~~~~~~~~  247 (431)
                      .+=.++|+..+-++.+|+.+...|+..+.-+||..++.++..||+++.|.+++++.+.||+++...++.+. +....+..
T Consensus       167 ~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~~a~~~l  246 (416)
T KOG2765|consen  167 PLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDLPASRPL  246 (416)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccccCCccchh
Confidence            33377999999999999999999999999999999999999999999999999999999999976654322 11223468


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCccCceeehhhhhhHHHHHHHHHHHhhhccCCCCCCCchHhHhhhhH
Q 014092          248 LWPSMMIASSAFQAGASIIKEFIFDDAKKCLKGKSLDIFVVNSFGSGFQALFVLLFLPFLSNLKGIPFAELPLYLKSGAG  327 (431)
Q Consensus       248 ig~~lillA~i~~A~s~V~~E~~f~~y~k~lk~~~~d~~~l~~w~~l~q~l~g~llLpi~~~~~g~~~~~~~~~~~~g~~  327 (431)
                      +|+++-++|++.||+-.+.-+|-..++     |.++|.-.+-|++|+|.+++.-..+.++-.. +.+.-++|+...    
T Consensus       247 lG~llaL~sA~~YavY~vllk~~~~~e-----g~rvdi~lffGfvGLfnllllwP~l~iL~~~-~~e~F~lP~~~q----  316 (416)
T KOG2765|consen  247 LGNLLALLSALLYAVYTVLLKRKIGDE-----GERVDIQLFFGFVGLFNLLLLWPPLIILDFF-GEERFELPSSTQ----  316 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccc-----cccccHHHHHHHHHHHHHHHHhHHHHHHHHh-ccCcccCCCCce----
Confidence            999999999999999999977533332     3467877777877877777632211111111 222223332111    


Q ss_pred             hhhccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHhHHHhhhHhhhcccCCCCCCCCCcHHHHHH
Q 014092          328 CLLNLGANTSGCNGAPLLPLLYIATNMAFNISMLRLMKISSAVVSSLVVMLSVPIAIYVLSLPLPYLPEGASLSPFFLFG  407 (431)
Q Consensus       328 c~~g~~~~~~~c~~a~~~~llyl~~~~~~n~~~~~l~k~~sA~~~sl~~~l~vPl~~~~fs~~~~~l~~gE~ls~~~liG  407 (431)
                                   ....+....+...+.-++|...+. -.+..+..+.+++.+|+..++ ...+    .|...++.+++|
T Consensus       317 -------------~~~vv~~~ligtvvSDylW~~a~~-lTs~Lv~TlgmSltIPLA~~a-D~l~----k~~~~S~~~iiG  377 (416)
T KOG2765|consen  317 -------------FSLVVFNNLIGTVVSDYLWAKAVL-LTSPLVVTLGMSLTIPLAMFA-DVLI----KGKHPSALYIIG  377 (416)
T ss_pred             -------------eEeeeHhhHHHHHHHHHHHHHHHH-hccchhheeeeeEeeeHHHHH-HHHH----cCCCCCHHHHHH
Confidence                         111111122233333444443222 245666666667888988765 3333    488999999999


Q ss_pred             HHHHHhhheeecCCCCCc
Q 014092          408 SVILLLGLTLYNLPQPAK  425 (431)
Q Consensus       408 ~~lI~~Gv~lYn~~~~~~  425 (431)
                      .+.|++|.++.|...+..
T Consensus       378 si~Ifv~Fv~vn~~~~~~  395 (416)
T KOG2765|consen  378 SIPIFVGFVIVNISSENS  395 (416)
T ss_pred             HHHHHHHHhheecccccc
Confidence            999999999999886543

>TIGR00688 rarD rarD protein

Probab=99.40  E-value=7.4e-11  Score=114.31  Aligned_cols=159  Identities=12%  Similarity=0.065  Sum_probs=108.9

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHhccCCChhHHHHHH-HHHHHHHHHHHHHHHHHhccccccccccCCCc----hhhHHHH
Q 014092           95 IIISSAVTVTLAIANRVLYKLALVPMKQYPFFLAQI-TTFGYVVIYFSILYTRYLMGIVTDEMISLPKY----RFLFIGM  169 (431)
Q Consensus        95 i~i~~~~~li~Gs~n~v~~K~~~~~~~~~Pffla~l-~~~~~~ll~~~il~~r~~~~~~~~~~~~~p~~----~~~iigl  169 (431)
                      +...++..++|| .+.++.|.. .++  .|..+... ..++. ++..++...+.+++..++..++.+++    ...+.|+
T Consensus         4 ~~~~i~a~~~wg-~~~~~~k~~-~~~--~~~~i~~~R~~~a~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~   78 (256)
T TIGR00688         4 IIVSLLASFLFG-YMYYYSKLL-KPL--PATDILGHRMIWSF-PFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGL   78 (256)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHh-ccC--CHHHHHHHHHHHHH-HHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHH
Confidence            445667777888 899999984 345  36666666 33332 22222221111100000011111111    2444577


Q ss_pred             HHHHHHHHHHHhhccCCccHHHHHhhhhHHHHHHHHHHHhcCccchhHHHHHHHHhhheeEEeccCCCCCCccccccchH
Q 014092          170 LEALGVASGMAAAAMLPGPAIPILSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVGVAVASGSNSGQMLSRVDFLW  249 (431)
Q Consensus       170 ld~~~~~l~~~g~~~~~~~~~~IL~qs~i~~T~llS~~fLk~r~~~~qiiG~~lv~~GV~vv~~s~~~~~~~~~~~~~ig  249 (431)
                      +......+.+.+..+++.+...++.++.++|+++++++++|||++++||+|++++++|++++..+++  +  .   .   
T Consensus        79 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~--~--~---~---  148 (256)
T TIGR00688        79 LIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKG--S--L---P---  148 (256)
T ss_pred             HHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcC--C--c---h---
Confidence            7777888999999999999999999999999999999999999999999999999999987754321  1  0   1   


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 014092          250 PSMMIASSAFQAGASIIKEF  269 (431)
Q Consensus       250 ~~lillA~i~~A~s~V~~E~  269 (431)
                       .+.+++++++|+..++.|+
T Consensus       149 -~~~l~aa~~~a~~~i~~~~  167 (256)
T TIGR00688       149 -WEALVLAFSFTAYGLIRKA  167 (256)
T ss_pred             -HHHHHHHHHHHHHHHHHhh
Confidence             3567899999999999885

This uncharacterized protein is predicted to have many membrane-spanning domains.

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.32  E-value=2.2e-10  Score=111.67  Aligned_cols=264  Identities=12%  Similarity=0.141  Sum_probs=181.8

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCchhhHHHHHHHHHHHHHHHhhccCCccHHHHHhhhhHH
Q 014092          120 MKQYPFFLAQITTFGYVVIYFSILYTRYLMGIVTDEMISLPKYRFLFIGMLEALGVASGMAAAAMLPGPAIPILSQTFLV  199 (431)
Q Consensus       120 ~~~~Pffla~l~~~~~~ll~~~il~~r~~~~~~~~~~~~~p~~~~~iiglld~~~~~l~~~g~~~~~~~~~~IL~qs~i~  199 (431)
                      -+++|.|+....++..+++-.  .+.+.+..   +...+.|+|++..+++.+.+...+.+-++-|++=+.+.+--++..+
T Consensus        47 rF~~~~fL~~~q~l~~~~~s~--~~l~~~k~---~~~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmI  121 (327)
T KOG1581|consen   47 RFEHSLFLVFCQRLVALLVSY--AMLKWWKK---ELSGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMI  121 (327)
T ss_pred             cccccHHHHHHHHHHHHHHHH--HHHhcccc---cCCCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhh
Confidence            367888998887776533332  23222211   1234568899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCccchhHHHHHHHHhhheeEEeccCCCC--CCccccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 014092          200 WQLGFSAVLLGKKFSVTQIAGCLLVATGVGVAVASGSNS--GQMLSRVDFLWPSMMIASSAFQAGASIIKEFIFDDAKKC  277 (431)
Q Consensus       200 ~T~llS~~fLk~r~~~~qiiG~~lv~~GV~vv~~s~~~~--~~~~~~~~~ig~~lillA~i~~A~s~V~~E~~f~~y~k~  277 (431)
                      =+|++..++-|+||+.++++.++++..|+.+-...+.++  ++...++++.|..|+...-+..|+-|..|+++|++|   
T Consensus       122 PVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~---  198 (327)
T KOG1581|consen  122 PVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKSGRENSPIGILLLFGYLLFDGFTNATQDSLFKKY---  198 (327)
T ss_pred             HHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCCCccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhccC---
Confidence            999999999999999999999999999998875433222  222335789999999999999999999999999766   


Q ss_pred             ccCCccCceeehhhhhhHHHHHHHHHHHhhhccCCCCCCCchHhHhhhhHhhhccCCCCCCCCCccHHHHHHHHHHHHHH
Q 014092          278 LKGKSLDIFVVNSFGSGFQALFVLLFLPFLSNLKGIPFAELPLYLKSGAGCLLNLGANTSGCNGAPLLPLLYIATNMAFN  357 (431)
Q Consensus       278 lk~~~~d~~~l~~w~~l~q~l~g~llLpi~~~~~g~~~~~~~~~~~~g~~c~~g~~~~~~~c~~a~~~~llyl~~~~~~n  357 (431)
                          +++.+.+.....+|..++.++-    ...+|...+.+ +        |....+   +   .+.-..+|-.+....+
T Consensus       199 ----k~s~~~mM~~vNLf~~i~~~~~----li~qg~~~~av-~--------F~~~hp---~---~~~Di~l~s~~gavGQ  255 (327)
T KOG1581|consen  199 ----KVSSLHMMFGVNLFSAILNGTY----LILQGHLLPAV-S--------FIKEHP---D---VAFDILLYSTCGAVGQ  255 (327)
T ss_pred             ----CccHhHHHHHHHHHHHHHHHHh----hhcCCCCchHH-H--------HHHcCh---h---HHHHHHHHHHhhhhhh
Confidence                3565555554444555543322    11122100000 0        000011   1   1223566777777777


Q ss_pred             HHHHHHhcccchHHHHHHHHhHHHhhhHhhhcccCCCCCCCCCcHHHHHHHHHHHhhheeec
Q 014092          358 ISMLRLMKISSAVVSSLVVMLSVPIAIYVLSLPLPYLPEGASLSPFFLFGSVILLLGLTLYN  419 (431)
Q Consensus       358 ~~~~~l~k~~sA~~~sl~~~l~vPl~~~~fs~~~~~l~~gE~ls~~~liG~~lI~~Gv~lYn  419 (431)
                      ++.++-++.-++.+...+++.|=-++..+.++.     .|.++++.+..|..++..|+.+=.
T Consensus       256 ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~-----f~h~~s~~q~~g~~iVFg~i~l~~  312 (327)
T KOG1581|consen  256 LFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIV-----FGHPLSSEQWLGVLIVFGGIFLEI  312 (327)
T ss_pred             heehhhHhhcccHHHHHHHHHHHHHHHHHHHHH-----hCCccchhhccCeeeehHHHHHHH
Confidence            777665566555555555666744444443332     388999999999999999987654

>PF08627 CRT-like: CRT-like; InterPro: IPR013936 This region is found in proteins related to Plasmodium falciparum chloroquine resistance transporter (CRT)

Probab=99.25  E-value=6.4e-12  Score=107.02  Aligned_cols=74  Identities=47%  Similarity=0.868  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHH-HHHHhccccccccccCCCchhhH
Q 014092           93 QIIIISSAVTVTLAIANRVLYKLALVPMKQYPFFLAQITTFGYVVIYFSIL-YTRYLMGIVTDEMISLPKYRFLF  166 (431)
Q Consensus        93 ~~i~i~~~~~li~Gs~n~v~~K~~~~~~~~~Pffla~l~~~~~~ll~~~il-~~r~~~~~~~~~~~~~p~~~~~i  166 (431)
                      ..++++++++++.|++|+|++|.+..++.|||||++++++++|+++|+++. +.+++++.+++|+|.+|+++|++
T Consensus        56 ~~L~v~~vv~V~s~v~N~VL~K~~~~~m~NY~fFL~QlTt~gyvpIffaV~lyk~y~t~~It~Emr~FPkyKFaI  130 (130)
T PF08627_consen   56 FKLLVYVVVYVVSGVINRVLYKKMTNPMKNYPFFLNQLTTFGYVPIFFAVVLYKMYFTGDITKEMRAFPKYKFAI  130 (130)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHhcccceehHHHHHHHHHHHHcCCCCHHHHhCccccccC
Confidence            778889999999999999999999999999999999999999999999986 46788899999999999999864

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=99.19  E-value=6.5e-09  Score=103.16  Aligned_cols=271  Identities=14%  Similarity=0.056  Sum_probs=165.6

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCchhhHH----HHH
Q 014092           95 IIISSAVTVTLAIANRVLYKLALVPMKQYPFFLAQITTFGYVVIYFSILYTRYLMGIVTDEMISLPKYRFLFI----GML  170 (431)
Q Consensus        95 i~i~~~~~li~Gs~n~v~~K~~~~~~~~~Pffla~l~~~~~~ll~~~il~~r~~~~~~~~~~~~~p~~~~~ii----gll  170 (431)
                      ++++++.+++|| .+-+..|... ..+ .+++.  -+.++..++.......|..     +    .+.++....    |++
T Consensus         3 ~l~~lia~~~wG-s~g~~~k~~~-g~~-~~~~~--~~~~g~l~~~~~~~~~~~~-----~----~~~~~~~~~g~l~G~~   68 (290)
T TIGR00776         3 ILIALIPALFWG-SFVLINVKIG-GGP-YSQTL--GTTFGALILSIAIAIFVLP-----E----FWALSIFLVGLLSGAF   68 (290)
T ss_pred             hHHHHHHHHHHh-hhHHHHhccC-CCH-HHHHH--HHHHHHHHHHHHHHHHhCC-----c----ccccHHHHHHHHHHHH
Confidence            566788899999 6666667554 232 12222  2344432222211122211     0    011222333    555


Q ss_pred             HHHHHHHHHHhhccCCccHHHHHhh-hhHHHHHHHHHHHhcCccchhH----HHHHHHHhhheeEEeccCCCCCCccc-c
Q 014092          171 EALGVASGMAAAAMLPGPAIPILSQ-TFLVWQLGFSAVLLGKKFSVTQ----IAGCLLVATGVGVAVASGSNSGQMLS-R  244 (431)
Q Consensus       171 d~~~~~l~~~g~~~~~~~~~~IL~q-s~i~~T~llS~~fLk~r~~~~q----iiG~~lv~~GV~vv~~s~~~~~~~~~-~  244 (431)
                      -..+|++.+.+..++..+....+.+ ....++.+++.+++|||.+++|    ++|++++++|++++...+.++.+..+ .
T Consensus        69 w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~~~~  148 (290)
T TIGR00776        69 WALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGIKSEF  148 (290)
T ss_pred             HHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEecccccccccccc
Confidence            6789999999999999999988888 7778999999999999999999    99999999999888654322111000 2


Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCccCceeehhhhhhHHHHHHHHHHHhhhccCCCCCCCchHhHhh
Q 014092          245 VDFLWPSMMIASSAFQAGASIIKEFIFDDAKKCLKGKSLDIFVVNSFGSGFQALFVLLFLPFLSNLKGIPFAELPLYLKS  324 (431)
Q Consensus       245 ~~~ig~~lillA~i~~A~s~V~~E~~f~~y~k~lk~~~~d~~~l~~w~~l~q~l~g~llLpi~~~~~g~~~~~~~~~~~~  324 (431)
                      +...|+.+.++|++.+++..+.-|+        +   +.|++....+.. ++++++..++.... .+..+.  .++..  
T Consensus       149 ~~~~Gi~~~l~sg~~y~~~~~~~~~--------~---~~~~~~~~~~~~-~g~~~~~~~~~~~~-~~~~~~--~~~~~--  211 (290)
T TIGR00776       149 NFKKGILLLLMSTIGYLVYVVVAKA--------F---GVDGLSVLLPQA-IGMVIGGIIFNLGH-ILAKPL--KKYAI--  211 (290)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHH--------c---CCCcceehhHHH-HHHHHHHHHHHHHH-hcccch--HHHHH--
Confidence            2356999999999999999999874        1   257776643222 33333333222111 110000  01110  


Q ss_pred             hhHhhhccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhc-ccchHHHHHHHHhHHHhhhHhhhcccCCCCCCCCCcHH
Q 014092          325 GAGCLLNLGANTSGCNGAPLLPLLYIATNMAFNISMLRLMK-ISSAVVSSLVVMLSVPIAIYVLSLPLPYLPEGASLSPF  403 (431)
Q Consensus       325 g~~c~~g~~~~~~~c~~a~~~~llyl~~~~~~n~~~~~l~k-~~sA~~~sl~~~l~vPl~~~~fs~~~~~l~~gE~ls~~  403 (431)
                       +                 ...+.-++ -..-++++..-.+ +.++...++... .-|+.+.+++..+    .+|..++.
T Consensus       212 -~-----------------~~~~~Gi~-~~ia~~~y~~~~~~~~~~~~~~~ls~-~~pvia~~~~v~~----l~E~~~~~  267 (290)
T TIGR00776       212 -L-----------------LNILPGLM-WGIGNFFYLFSAQPKVGVATSFSLSQ-LGVIISTLGGILI----LGEKKTKR  267 (290)
T ss_pred             -H-----------------HHHHHHHH-HHHHHHHHHHHcccccchhhHHHHHH-HHHHHHHHHHHHH----hccCCCcc
Confidence             1                 00111111 1222333333445 778888888654 4588888887654    49999998


Q ss_pred             HH----HHHHHHHhhheeecC
Q 014092          404 FL----FGSVILLLGLTLYNL  420 (431)
Q Consensus       404 ~l----iG~~lI~~Gv~lYn~  420 (431)
                      ++    +|.++++.|+++-..
T Consensus       268 ~~~~~~iG~~lIi~~~~l~~~  288 (290)
T TIGR00776       268 EMIAISVGIILIIIAANILGI  288 (290)
T ss_pred             eeehhHHHHHHHHHHHHHHhc
Confidence            88    999999999987643

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>TIGR00803 nst UDP-galactose transporter

Probab=99.09  E-value=2.1e-09  Score=102.17  Aligned_cols=220  Identities=17%  Similarity=0.090  Sum_probs=146.3

Q ss_pred             hHHHHHHHHHHHHHHHhhccCCccHHHHHhhhhHHHHHHHHHHHhcCccchhHHHHHHHHhhheeEEeccCCCCCCcccc
Q 014092          165 LFIGMLEALGVASGMAAAAMLPGPAIPILSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVGVAVASGSNSGQMLSR  244 (431)
Q Consensus       165 ~iiglld~~~~~l~~~g~~~~~~~~~~IL~qs~i~~T~llS~~fLk~r~~~~qiiG~~lv~~GV~vv~~s~~~~~~~~~~  244 (431)
                      .+++.....++.+...++.+......+.. |..+..++++....+++|++..||.++.....|+..+..+...+.....+
T Consensus         3 svPa~~~~~s~~l~~v~l~~~~~~~~~~~-~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~g   81 (222)
T TIGR00803         3 SVPIHIIFKQNNLVLIALGNLLAAGKQVT-QLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFG   81 (222)
T ss_pred             cccchHHHHhcchHHHHHhcccccceeee-hHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccccccc
Confidence            45667777788888888888888888888 99999999999999999999999999988888888775433221111112


Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCccCceeehhhhhhHHHHHHHHHHHhhhccCCCCCCCchHhHhh
Q 014092          245 VDFLWPSMMIASSAFQAGASIIKEFIFDDAKKCLKGKSLDIFVVNSFGSGFQALFVLLFLPFLSNLKGIPFAELPLYLKS  324 (431)
Q Consensus       245 ~~~ig~~lillA~i~~A~s~V~~E~~f~~y~k~lk~~~~d~~~l~~w~~l~q~l~g~llLpi~~~~~g~~~~~~~~~~~~  324 (431)
                      +.+.|..+++.++.+.++.++|+|+.+++       ++..     .|...+|..+-.+...+.....    .+.......
T Consensus        82 ~~~~g~~~~l~a~~~~~~~~~y~e~~~k~-------~~~~-----~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~  145 (222)
T TIGR00803        82 NPVVGLSAVLSALLSSGFAGVYFEKILKD-------GDTM-----FWSRNLQLPLFGLFSTFSVLLW----SDGTLISNF  145 (222)
T ss_pred             cHHHHHHHHHHHHHHHhhhHHHHHHcccC-------CCCc-----hHHHHHHHHHHHHHHHHHHHhh----cccchhhcc
Confidence            35677888899999999999999986532       2222     3444455433221111111000    000000000


Q ss_pred             hhHhhhccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHhHHHhhhHhhhcccCCCCCCCCCcHHH
Q 014092          325 GAGCLLNLGANTSGCNGAPLLPLLYIATNMAFNISMLRLMKISSAVVSSLVVMLSVPIAIYVLSLPLPYLPEGASLSPFF  404 (431)
Q Consensus       325 g~~c~~g~~~~~~~c~~a~~~~llyl~~~~~~n~~~~~l~k~~sA~~~sl~~~l~vPl~~~~fs~~~~~l~~gE~ls~~~  404 (431)
                                  ..+.+.+...+..+..+...+++...++|+.++++.+++.+.+. +...+.+..+    .||+++..+
T Consensus       146 ------------~~~~~~~~~~~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~-~~s~lls~~~----f~~~ls~~~  208 (222)
T TIGR00803       146 ------------GFFIGYPTAVWIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSI-ILSTLASVRL----FDAKISSTF  208 (222)
T ss_pred             ------------CcccCCchHHHHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHH-HHHHHHHHHH----hcCCccHHH
Confidence                        01222333344555556666666778999999999999887774 4444445433    499999999


Q ss_pred             HHHHHHHHhhheee
Q 014092          405 LFGSVILLLGLTLY  418 (431)
Q Consensus       405 liG~~lI~~Gv~lY  418 (431)
                      +.|..+++.|+++|
T Consensus       209 ~~g~~lV~~~~~lY  222 (222)
T TIGR00803       209 YLGAILVFLATFLY  222 (222)
T ss_pred             HHHHHHHHeeeEeC
Confidence            99999999999987

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.05  E-value=2.1e-08  Score=96.53  Aligned_cols=286  Identities=15%  Similarity=0.201  Sum_probs=178.8

Q ss_pred             hHHHHHHHHHHHHhhhhHHHHHHHHhc--cCCChhHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCchhhHHHH
Q 014092           92 SQIIIISSAVTVTLAIANRVLYKLALV--PMKQYPFFLAQITTFGYVVIYFSILYTRYLMGIVTDEMISLPKYRFLFIGM  169 (431)
Q Consensus        92 ~~~i~i~~~~~li~Gs~n~v~~K~~~~--~~~~~Pffla~l~~~~~~ll~~~il~~r~~~~~~~~~~~~~p~~~~~iigl  169 (431)
                      |.-++++.......=..|-.+.++...  .+.++-|+++..-++.|..+...  .    ...++.+.|..||+.+.++++
T Consensus        41 w~QFlic~~g~Ff~Yl~yGy~qElif~~~gfkp~GWylTlvQf~~Ysg~gli--e----~~~~~~k~r~iP~rtY~~la~  114 (367)
T KOG1582|consen   41 WTQFLICSAGVFFLYLVYGYLQELIFNVEGFKPFGWYLTLVQFLVYSGFGLI--E----LQLIQTKRRVIPWRTYVILAF  114 (367)
T ss_pred             hhhHHHHHhHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHhhhhe--E----EEeecccceecchhHhhhhHh
Confidence            444555544443333333344333332  36667899988866665322221  1    112344556788889999988


Q ss_pred             HHHHHHHHHHHhhccCCccHHHHHhhhhHHHHHHHHHHHhcCccchhHHHHHHHHhhheeEEeccCCCCCCccccccchH
Q 014092          170 LEALGVASGMAAAAMLPGPAIPILSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVGVAVASGSNSGQMLSRVDFLW  249 (431)
Q Consensus       170 ld~~~~~l~~~g~~~~~~~~~~IL~qs~i~~T~llS~~fLk~r~~~~qiiG~~lv~~GV~vv~~s~~~~~~~~~~~~~ig  249 (431)
                      +.....-+..-.+.|.+=+.|.|+.++..+=+|+-+.++-++||.+..++++.+..+|++.-...|+.....+   ..+|
T Consensus       115 ~t~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~sPNF---~~~G  191 (367)
T KOG1582|consen  115 LTVGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQTSPNF---NLIG  191 (367)
T ss_pred             hhhhccccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhcccccCCCc---ceee
Confidence            8766666667777888889999999999999999999999999999999999999999998876665433223   4778


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCccCceeehhhhhhHHHHHHHH--HHHhhhccCCCCCCCchHhHhhhhH
Q 014092          250 PSMMIASSAFQAGASIIKEFIFDDAKKCLKGKSLDIFVVNSFGSGFQALFVLL--FLPFLSNLKGIPFAELPLYLKSGAG  327 (431)
Q Consensus       250 ~~lillA~i~~A~s~V~~E~~f~~y~k~lk~~~~d~~~l~~w~~l~q~l~g~l--lLpi~~~~~g~~~~~~~~~~~~g~~  327 (431)
                      .+++-.|-++.|+-.-+||+.++++    ++.+   .++..    ++.-+|++  +.|...  -|.-++.+.       .
T Consensus       192 v~mIsgALl~DA~iGNvQEk~m~~~----~~ss---~Emvf----ySy~iG~vflf~~mvl--Tge~f~a~~-------f  251 (367)
T KOG1582|consen  192 VMMISGALLADAVIGNVQEKAMKMN----PASS---SEMVF----YSYGIGFVFLFAPMVL--TGELFSAWT-------F  251 (367)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHhhC----CCCc---ceEEE----eeecccHHHHHHHHHh--cccchhhhH-------H
Confidence            8999999999999999999999877    2222   33333    22222322  333321  121111111       1


Q ss_pred             hhhccCCCCCCCCCccHHHHHHHH----HHHHHHHHHHHHhcccchHHHHHHHHhHHHhhhHhhhcccCCCCCCCCCcHH
Q 014092          328 CLLNLGANTSGCNGAPLLPLLYIA----TNMAFNISMLRLMKISSAVVSSLVVMLSVPIAIYVLSLPLPYLPEGASLSPF  403 (431)
Q Consensus       328 c~~g~~~~~~~c~~a~~~~llyl~----~~~~~n~~~~~l~k~~sA~~~sl~~~l~vPl~~~~fs~~~~~l~~gE~ls~~  403 (431)
                                 |...+.-...|.+    .-.....+...++|-.+|.++..+.+.|=-+++ ++|..+    ...++|..
T Consensus       252 -----------caehp~~tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi-~lSfll----FsKPfT~q  315 (367)
T KOG1582|consen  252 -----------CAEHPVRTYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTARKAVTI-LLSFLL----FSKPFTEQ  315 (367)
T ss_pred             -----------HHhCcHhHHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHH-HHHHHH----HcCchHHH
Confidence                       1111110111111    111122233557788888887777766633333 333322    26788999


Q ss_pred             HHHHHHHHHhhheeecCCC
Q 014092          404 FLFGSVILLLGLTLYNLPQ  422 (431)
Q Consensus       404 ~liG~~lI~~Gv~lYn~~~  422 (431)
                      +.-|..+|+.|+++--..+
T Consensus       316 y~~~gllv~lgI~Ln~ysk  334 (367)
T KOG1582|consen  316 YVWSGLLVVLGIYLNMYSK  334 (367)
T ss_pred             HhhhhHHHHHHHHhhcccC
Confidence            9999999999999865444

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=99.01  E-value=4.2e-10  Score=107.80  Aligned_cols=218  Identities=17%  Similarity=0.200  Sum_probs=130.5

Q ss_pred             chhhHH-HHHHHHHHHHHHHhhccCCccHHHHHhhhhHHHHHHHHHHHhcCccchhHHHHHHHHhhheeEEeccC----C
Q 014092          162 YRFLFI-GMLEALGVASGMAAAAMLPGPAIPILSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVGVAVASG----S  236 (431)
Q Consensus       162 ~~~~ii-glld~~~~~l~~~g~~~~~~~~~~IL~qs~i~~T~llS~~fLk~r~~~~qiiG~~lv~~GV~vv~~s~----~  236 (431)
                      ++++++ |+.-..+-+++||++.|++.+=+.++.-+.+.+|.++|+.+||||++....+|..+.+.||+++.-++    +
T Consensus        97 R~~LiLRg~mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~  176 (346)
T KOG4510|consen   97 RKWLILRGFMGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGD  176 (346)
T ss_pred             EEEEEeehhhhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCC
Confidence            345555 88888899999999999999999999999999999999999999999999999999999999986432    1


Q ss_pred             C--CC-CccccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCccCceeehhhhhhHHHHHHHHH-HHhhhccCC
Q 014092          237 N--SG-QMLSRVDFLWPSMMIASSAFQAGASIIKEFIFDDAKKCLKGKSLDIFVVNSFGSGFQALFVLLF-LPFLSNLKG  312 (431)
Q Consensus       237 ~--~~-~~~~~~~~ig~~lillA~i~~A~s~V~~E~~f~~y~k~lk~~~~d~~~l~~w~~l~q~l~g~ll-Lpi~~~~~g  312 (431)
                      +  ++ ++.-+....|...-+.+.+..|.-.++-++         -||+.|...-...    -.+++.+. +.....+ |
T Consensus       177 ~t~g~~~s~~~~~~~gt~aai~s~lf~asvyIilR~---------iGk~~h~~msvsy----f~~i~lV~s~I~~~~i-g  242 (346)
T KOG4510|consen  177 TTEGEDSSQVEYDIPGTVAAISSVLFGASVYIILRY---------IGKNAHAIMSVSY----FSLITLVVSLIGCASI-G  242 (346)
T ss_pred             CccccccccccccCCchHHHHHhHhhhhhHHHHHHH---------hhccccEEEEehH----HHHHHHHHHHHHHhhc-c
Confidence            1  11 111011234555555565555444444442         3567787655442    22222211 1111111 1


Q ss_pred             CCCCCchHhHhhhhHhhhccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHhHHHhhhHhhhcccC
Q 014092          313 IPFAELPLYLKSGAGCLLNLGANTSGCNGAPLLPLLYIATNMAFNISMLRLMKISSAVVSSLVVMLSVPIAIYVLSLPLP  392 (431)
Q Consensus       313 ~~~~~~~~~~~~g~~c~~g~~~~~~~c~~a~~~~llyl~~~~~~n~~~~~l~k~~sA~~~sl~~~l~vPl~~~~fs~~~~  392 (431)
                        --++|                  .|.-.+.++.-.-++-+.++++.-.-++..-|.-.++.. ..=.++++++-+.+ 
T Consensus       243 --~~~lP------------------~cgkdr~l~~~lGvfgfigQIllTm~lQiErAGpvaim~-~~dvvfAf~wqv~f-  300 (346)
T KOG4510|consen  243 --AVQLP------------------HCGKDRWLFVNLGVFGFIGQILLTMGLQIERAGPVAIMT-YTDVVFAFFWQVLF-  300 (346)
T ss_pred             --ceecC------------------ccccceEEEEEehhhhhHHHHHHHHHhhhhccCCeehhh-HHHHHHHHHHHHHH-
Confidence              11222                  122112111111122334555543333444444444432 22235555555443 


Q ss_pred             CCCCCCCCcHHHHHHHHHHHhhheee
Q 014092          393 YLPEGASLSPFFLFGSVILLLGLTLY  418 (431)
Q Consensus       393 ~l~~gE~ls~~~liG~~lI~~Gv~lY  418 (431)
                         .++..+++.+.|.++++..++..
T Consensus       301 ---f~~~Pt~ws~~Ga~~vvsS~v~~  323 (346)
T KOG4510|consen  301 ---FGHWPTIWSWVGAVMVVSSTVWV  323 (346)
T ss_pred             ---hcCCChHHHhhceeeeehhHHHH
Confidence               38899999999999988776654

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=98.80  E-value=8.2e-07  Score=87.01  Aligned_cols=222  Identities=14%  Similarity=0.130  Sum_probs=146.3

Q ss_pred             HHHHHHHHHHHHHHhhccCCccHHHHHhhhhHHHHHHHHHHHhcCccchhHHHHHHHHhhheeEEeccCCCCCCcccccc
Q 014092          167 IGMLEALGVASGMAAAAMLPGPAIPILSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVGVAVASGSNSGQMLSRVD  246 (431)
Q Consensus       167 iglld~~~~~l~~~g~~~~~~~~~~IL~qs~i~~T~llS~~fLk~r~~~~qiiG~~lv~~GV~vv~~s~~~~~~~~~~~~  246 (431)
                      -|+..+.---+.++++.|++.+.+.|...+.+.|..++|.+|.=||+++.=..-+.+..+|+++....+.+-       .
T Consensus        90 talata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTqf-------~  162 (349)
T KOG1443|consen   90 TALATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQF-------N  162 (349)
T ss_pred             hhhhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecccce-------e
Confidence            355544444478899999999999999999999999999999999999988888888888888887655432       3


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCccCceeehhhhhhHHHHHHHHHHHhhhccCCCCCCCchHhHhhhh
Q 014092          247 FLWPSMMIASSAFQAGASIIKEFIFDDAKKCLKGKSLDIFVVNSFGSGFQALFVLLFLPFLSNLKGIPFAELPLYLKSGA  326 (431)
Q Consensus       247 ~ig~~lillA~i~~A~s~V~~E~~f~~y~k~lk~~~~d~~~l~~w~~l~q~l~g~llLpi~~~~~g~~~~~~~~~~~~g~  326 (431)
                      +.|..++..|+.+.|+--.+.+++.++..    -.+-+|+....-   .|-..+..++|.....||... ...+.   .+
T Consensus       163 i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~----~~~~~P~~ti~~---l~p~M~~~Ll~~~l~fEG~~~-~~~s~---~f  231 (349)
T KOG1443|consen  163 IEGFFLVLAASLLSGLRWAFTQMLLRNQP----SAKRNPIDTIFH---LQPWMSIGLLPLSLLFEGLHL-ITSSS---IF  231 (349)
T ss_pred             ehhHHHHHHHHHhhhhhHHHHHHHHhcCc----cccCCCeeeHHH---hhhHHHHHHHHHHHHHccccc-chhhh---HH
Confidence            67889999999999999999888887652    123455544432   334444457788777777211 11100   01


Q ss_pred             HhhhccCCCCCCCCCccHHHHHHHHH----HHHHHHHHHHHhcccchHHHHHHHHhHHHhhhHhhhcccCCCCCCCCCcH
Q 014092          327 GCLLNLGANTSGCNGAPLLPLLYIAT----NMAFNISMLRLMKISSAVVSSLVVMLSVPIAIYVLSLPLPYLPEGASLSP  402 (431)
Q Consensus       327 ~c~~g~~~~~~~c~~a~~~~llyl~~----~~~~n~~~~~l~k~~sA~~~sl~~~l~vPl~~~~fs~~~~~l~~gE~ls~  402 (431)
                         ...++      +..+.++.++..    .+...+....+..+.+..+.+++.-+. -+...+++...    .++.++.
T Consensus       232 ---~~~d~------~~~~rv~g~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~K-el~tl~la~ii----~~d~ls~  297 (349)
T KOG1443|consen  232 ---RFQDT------GLILRVIGLISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVK-EVCTLLLAIII----LKDQLSL  297 (349)
T ss_pred             ---HhcCc------cHHHHHHHHHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHH-HHHHHHHHHHH----hhcchhh
Confidence               00010      112222222221    122334446677888888888765332 22333333333    3889999


Q ss_pred             HHHHHHHHHHhhheeecC
Q 014092          403 FFLFGSVILLLGLTLYNL  420 (431)
Q Consensus       403 ~~liG~~lI~~Gv~lYn~  420 (431)
                      ..+.|+.+...|+..|..
T Consensus       298 lN~~Gl~i~~agi~~~~~  315 (349)
T KOG1443|consen  298 LNWLGLAICLAGILLHRN  315 (349)
T ss_pred             hHHHHHHHHHHHHHHhcc
Confidence            999999999999999943

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=98.78  E-value=1.8e-08  Score=85.98  Aligned_cols=83  Identities=14%  Similarity=0.148  Sum_probs=69.1

Q ss_pred             cccccCCCchhhHHHHHHH-HHHHHHHHhhccCCccHHHHHhhhhHHHHHHHHHHHhcCccchhHHHHHHHHhhheeEEe
Q 014092          154 DEMISLPKYRFLFIGMLEA-LGVASGMAAAAMLPGPAIPILSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVGVAV  232 (431)
Q Consensus       154 ~~~~~~p~~~~~iiglld~-~~~~l~~~g~~~~~~~~~~IL~qs~i~~T~llS~~fLk~r~~~~qiiG~~lv~~GV~vv~  232 (431)
                      ++.++.++......|++.. .++.+.++|..+.++ ...++.++.++++++++.+++|||+++++++|++++++|++++.
T Consensus        27 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~  105 (113)
T PF13536_consen   27 RALRRKPWLWLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIA  105 (113)
T ss_pred             HHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh
Confidence            3333433444555588875 788899999999995 78899999999999999999999999999999999999999998


Q ss_pred             ccCCC
Q 014092          233 ASGSN  237 (431)
Q Consensus       233 ~s~~~  237 (431)
                      .++.+
T Consensus       106 ~~~~~  110 (113)
T PF13536_consen  106 WSDLT  110 (113)
T ss_pred             hhhcc
Confidence            76654

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=98.64  E-value=1.9e-07  Score=88.27  Aligned_cols=230  Identities=15%  Similarity=0.112  Sum_probs=150.7

Q ss_pred             cCCCchhhHHHHHHHHHHHHHHHhhccCCccHHHHHhhhhHHHHHHHHHHHhcCccchhHHHHHHHHhhheeEEeccCCC
Q 014092          158 SLPKYRFLFIGMLEALGVASGMAAAAMLPGPAIPILSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVGVAVASGSN  237 (431)
Q Consensus       158 ~~p~~~~~iiglld~~~~~l~~~g~~~~~~~~~~IL~qs~i~~T~llS~~fLk~r~~~~qiiG~~lv~~GV~vv~~s~~~  237 (431)
                      +.|-|.++.-++-..++....+-+++++|=+.+.+=....++=+|++.+++.+|+|+|+++.++++.++||++-......
T Consensus        82 ~t~~~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~K  161 (337)
T KOG1580|consen   82 NTPTKMYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENK  161 (337)
T ss_pred             CCcchHHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccc
Confidence            45667788777777788888888999999998877778888889999999999999999999999999999998765321


Q ss_pred             CCCccccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCccCceeehhhhhhHHHHHHHHHHHhhhccCCCCCCC
Q 014092          238 SGQMLSRVDFLWPSMMIASSAFQAGASIIKEFIFDDAKKCLKGKSLDIFVVNSFGSGFQALFVLLFLPFLSNLKGIPFAE  317 (431)
Q Consensus       238 ~~~~~~~~~~ig~~lillA~i~~A~s~V~~E~~f~~y~k~lk~~~~d~~~l~~w~~l~q~l~g~llLpi~~~~~g~~~~~  317 (431)
                      -++........|+++.++|-...++-++.||++=..|++  .| +--.+++|.|..++-.    .-+.+.    |    +
T Consensus       162 v~g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~--~g-~~MM~~~NlwStL~Lg----~g~lfT----G----E  226 (337)
T KOG1580|consen  162 VGGAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQR--TG-TSMMFYTNLWSTLYLG----AGLLFT----G----E  226 (337)
T ss_pred             cCCCcccccchHHHHHHHHHHhcccchhHHHHHHHhhcc--Cc-hhhHHHHHHHHHHHhh----hhheeh----h----h
Confidence            111111224679999999999999999999997766631  22 2224456665443321    111111    1    2


Q ss_pred             chHhHhhhhHhhhccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHhHHHhhhHhhhcccCCCCCC
Q 014092          318 LPLYLKSGAGCLLNLGANTSGCNGAPLLPLLYIATNMAFNISMLRLMKISSAVVSSLVVMLSVPIAIYVLSLPLPYLPEG  397 (431)
Q Consensus       318 ~~~~~~~g~~c~~g~~~~~~~c~~a~~~~llyl~~~~~~n~~~~~l~k~~sA~~~sl~~~l~vPl~~~~fs~~~~~l~~g  397 (431)
                      +.+.     ..|..-.+      ..+.-..++.++....+.+.+.-+.+-+..+.+++.+-| -++.++.|.++    .+
T Consensus       227 lweF-----~yF~~RhP------~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTR-KfFTil~SVll----f~  290 (337)
T KOG1580|consen  227 LWEF-----FYFVQRHP------YVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTR-KFFTILISVLL----FN  290 (337)
T ss_pred             HHHH-----HHHHHhcc------HHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehH-HHHHHHHHHHH----hc
Confidence            2111     11111111      011112333344445555556666777887777765444 23333333322    38


Q ss_pred             CCCcHHHHHHHHHHHhhheee
Q 014092          398 ASLSPFFLFGSVILLLGLTLY  418 (431)
Q Consensus       398 E~ls~~~liG~~lI~~Gv~lY  418 (431)
                      ++++..|++|.+++..|+..=
T Consensus       291 npls~rQwlgtvlVF~aL~~D  311 (337)
T KOG1580|consen  291 NPLSGRQWLGTVLVFSALTAD  311 (337)
T ss_pred             CcCcHHHHHHHHHHHHHhhhH
Confidence            999999999999999998764

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=98.63  E-value=1.4e-07  Score=79.76  Aligned_cols=121  Identities=21%  Similarity=0.191  Sum_probs=85.0

Q ss_pred             hhhhHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCchhhHHHHHH-HHHHHHHHHhhc
Q 014092          105 LAIANRVLYKLALVPMKQYPFFLAQITTFGYVVIYFSILYTRYLMGIVTDEMISLPKYRFLFIGMLE-ALGVASGMAAAA  183 (431)
Q Consensus       105 ~Gs~n~v~~K~~~~~~~~~Pffla~l~~~~~~ll~~~il~~r~~~~~~~~~~~~~p~~~~~iiglld-~~~~~l~~~g~~  183 (431)
                      || ...+..|...++.+  |........+...+ .+.......+.+  .++.....+...+..|.+. ..++.+.+.|..
T Consensus         3 ~a-~~~~~~k~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   76 (126)
T PF00892_consen    3 WA-IYSVFSKKLLKKIS--PLSITFWRFLIAGI-LLILLLILGRKP--FKNLSPRQWLWLLFLGLLGTALAYLLYFYALK   76 (126)
T ss_pred             ee-eHHHHHHHHhccCC--HHHHHHHHHHHHHH-HHHHHHhhcccc--ccCCChhhhhhhhHhhccceehHHHHHHHHHH
Confidence            45 67788888888753  55555553332222 222222222211  1111111123456667774 779999999999


Q ss_pred             cCCccHHHHHhhhhHHHHHHHHHHHhcCccchhHHHHHHHHhhheeEE
Q 014092          184 MLPGPAIPILSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVGVA  231 (431)
Q Consensus       184 ~~~~~~~~IL~qs~i~~T~llS~~fLk~r~~~~qiiG~~lv~~GV~vv  231 (431)
                      +++++..+++..+.++++++++++++|||++++|++|+++++.|++++
T Consensus        77 ~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~  124 (126)
T PF00892_consen   77 YISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI  124 (126)
T ss_pred             hcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999998764

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=98.55  E-value=1.1e-06  Score=77.96  Aligned_cols=152  Identities=22%  Similarity=0.317  Sum_probs=98.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCccCceeehhhhhhHHHHHHHHHHHhhhccCCCCCCCchHhHhhhhHh
Q 014092          249 WPSMMIASSAFQAGASIIKEFIFDDAKKCLKGKSLDIFVVNSFGSGFQALFVLLFLPFLSNLKGIPFAELPLYLKSGAGC  328 (431)
Q Consensus       249 g~~lillA~i~~A~s~V~~E~~f~~y~k~lk~~~~d~~~l~~w~~l~q~l~g~llLpi~~~~~g~~~~~~~~~~~~g~~c  328 (431)
                      |.++.+.|.++.|+.+++.|+.+++..  .++++.|++.+..+.+....++   ++|.....|+.   +..+...+..  
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~--~~~~~~~~~~l~~~~~~~s~~~---l~~~~~~~e~~---~~~~~~~~~~--   70 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVS--SNSKKLNPLNLLYYNSPISFII---LLPLAFLLEGP---QLSSFFSEIF--   70 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhccc--ccccCCCHHHHHHHHHHHHHHH---HHHHHHHHhhh---hhhhHHHHhh--
Confidence            457889999999999999998886531  1235688888888666666655   44444434431   1111100000  


Q ss_pred             hhccCCCCCCCC-CccHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHhHHHhhhHhhhcccCCCCCCCCCcHHHHHH
Q 014092          329 LLNLGANTSGCN-GAPLLPLLYIATNMAFNISMLRLMKISSAVVSSLVVMLSVPIAIYVLSLPLPYLPEGASLSPFFLFG  407 (431)
Q Consensus       329 ~~g~~~~~~~c~-~a~~~~llyl~~~~~~n~~~~~l~k~~sA~~~sl~~~l~vPl~~~~fs~~~~~l~~gE~ls~~~liG  407 (431)
                        .  .+.. .. ......+.-.+...++|+..+.++++.|+.+.++...+..++..+ ++..+    .||++++.+++|
T Consensus        71 --~--~~~~-~~~~~~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~-~s~~~----f~~~~t~~~~~G  140 (153)
T PF03151_consen   71 --G--EELS-SDPNFIFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVIL-LSVIF----FGEPITPLQIIG  140 (153)
T ss_pred             --h--hhhc-chHHHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHH-HHhhh----cCCcCCHHHHHH
Confidence              0  0000 00 111222233344568899999999999999999998887655544 44333    389999999999


Q ss_pred             HHHHHhhheeecC
Q 014092          408 SVILLLGLTLYNL  420 (431)
Q Consensus       408 ~~lI~~Gv~lYn~  420 (431)
                      .++.+.|.++|++
T Consensus       141 ~~l~~~G~~~Ysy  153 (153)
T PF03151_consen  141 IVLALVGVLLYSY  153 (153)
T ss_pred             HHHHHHHHheeeC
Confidence            9999999999984

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.52  E-value=2e-05  Score=78.02  Aligned_cols=286  Identities=17%  Similarity=0.190  Sum_probs=171.2

Q ss_pred             HHHHHHHHhhhhHHHHHHHHhccCCChhHHHHH--HHHHHHHHHHHHHHHHHHhccccccccccCC-CchhhHHHHHHHH
Q 014092           97 ISSAVTVTLAIANRVLYKLALVPMKQYPFFLAQ--ITTFGYVVIYFSILYTRYLMGIVTDEMISLP-KYRFLFIGMLEAL  173 (431)
Q Consensus        97 i~~~~~li~Gs~n~v~~K~~~~~~~~~Pffla~--l~~~~~~ll~~~il~~r~~~~~~~~~~~~~p-~~~~~iiglld~~  173 (431)
                      ...+.+.+..+.-.+.-|+...... ||-.+..  .-.+.-++  ...+.+|  .|.++.|..+.. .|++.-+.++...
T Consensus        15 ~sa~~Y~~sS~lm~vvNK~vls~y~-f~~~l~l~~~Q~l~s~~--~v~~lk~--~~lv~~~~l~~~~~kk~~P~~~lf~~   89 (314)
T KOG1444|consen   15 LSALFYCLSSILMTVVNKIVLSSYN-FPMGLLLMLLQSLASVL--VVLVLKR--LGLVNFRPLDLRTAKKWFPVSLLFVG   89 (314)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHH--HHHHHHH--hceeecCCcChHHHHHHccHHHHHHH
Confidence            4555666666566777787776542 4444333  21222111  1111222  222333321111 1445666888888


Q ss_pred             HHHHHHHhhccCCccHHHHHhhhhHHHHHHHHHHHhcCccchhHHHHHHHHhhheeEEeccCCCCCCccccccchHHHHH
Q 014092          174 GVASGMAAAAMLPGPAIPILSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVGVAVASGSNSGQMLSRVDFLWPSMM  253 (431)
Q Consensus       174 ~~~l~~~g~~~~~~~~~~IL~qs~i~~T~llS~~fLk~r~~~~qiiG~~lv~~GV~vv~~s~~~~~~~~~~~~~ig~~li  253 (431)
                      .-+....++.|.+.+++.+++...++++++.-..|+|+|.++.-|..+....+|-.....++...+       ..|-...
T Consensus        90 ~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~sf~-------~~gY~w~  162 (314)
T KOG1444|consen   90 MLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLSFN-------LRGYSWA  162 (314)
T ss_pred             HHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccceec-------chhHHHH
Confidence            888888999999999999999999999999999999999999999999999988776654443221       2255677


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhccCCccCceeehhhhhhHHHHHHHHHHHhhhccCCCCCCCchHhHhhhhHhhhccC
Q 014092          254 IASSAFQAGASIIKEFIFDDAKKCLKGKSLDIFVVNSFGSGFQALFVLLFLPFLSNLKGIPFAELPLYLKSGAGCLLNLG  333 (431)
Q Consensus       254 llA~i~~A~s~V~~E~~f~~y~k~lk~~~~d~~~l~~w~~l~q~l~g~llLpi~~~~~g~~~~~~~~~~~~g~~c~~g~~  333 (431)
                      ...++..+.-.++.|+..       +..+.+-+.+..    |.-++..+.+++.....|    |+.+...       +  
T Consensus       163 ~~n~~~~a~~~v~~kk~v-------d~~~l~~~~lv~----yNnl~~L~~l~~~~~~~g----e~~~l~~-------~--  218 (314)
T KOG1444|consen  163 LANCLTTAAFVVYVKKSV-------DSANLNKFGLVF----YNNLLSLPPLLILSFITG----ELDALSL-------N--  218 (314)
T ss_pred             HHHHHHHHHHHHHHHHhh-------ccccccceeEEe----ehhHHHHHHHHHHHHHhc----chHHHHh-------h--
Confidence            788888888899987533       334455555555    444444334444433322    2211100       0  


Q ss_pred             CCCCCCCCccHHHHHHHHHHHH--HHHHHHHHhcccchHHHHHHHHhHHHhhhHhhhcccCCCCCCCCCcHHHHHHHHHH
Q 014092          334 ANTSGCNGAPLLPLLYIATNMA--FNISMLRLMKISSAVVSSLVVMLSVPIAIYVLSLPLPYLPEGASLSPFFLFGSVIL  411 (431)
Q Consensus       334 ~~~~~c~~a~~~~llyl~~~~~--~n~~~~~l~k~~sA~~~sl~~~l~vPl~~~~fs~~~~~l~~gE~ls~~~liG~~lI  411 (431)
                        .+.|.....+..+.+.+.++  -+.+...=++..||++.+++. ..- ...+..+.   .+.+|+++++.-++|..+=
T Consensus       219 --~~~~~~~~~~~~~~lScv~gf~isy~s~~ct~~~SAtT~tivG-~~n-~l~t~l~~---ll~~d~~~~~~n~~gll~~  291 (314)
T KOG1444|consen  219 --FDNWSDSSVLVVMLLSCVMGFGISYTSFLCTRVNSATTTTIVG-AKN-KLLTYLGG---LLFGDKPFTFLNVIGLLVG  291 (314)
T ss_pred             --cccccchhHHHHHHHHHHHHHHHHHHHHHHHhhccccceeehh-hhh-hHHHHHHH---HhcCCceechhhhHHHHHH
Confidence              01121122223333333333  344445667888888888765 221 11111111   1124899999999999999


Q ss_pred             HhhheeecCCCCCc
Q 014092          412 LLGLTLYNLPQPAK  425 (431)
Q Consensus       412 ~~Gv~lYn~~~~~~  425 (431)
                      ++|=++|+..+.++
T Consensus       292 ~~ggv~Y~~~~~~~  305 (314)
T KOG1444|consen  292 FFGGVLYSYATFRK  305 (314)
T ss_pred             hhhhhHHhhhhhhh
Confidence            99999999887443

>COG2510 Predicted membrane protein [Function unknown]

Probab=98.42  E-value=5e-06  Score=71.92  Aligned_cols=130  Identities=18%  Similarity=0.213  Sum_probs=89.4

Q ss_pred             HHHHHHHhhhhHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCchhhHH-HHHHHHHHH
Q 014092           98 SSAVTVTLAIANRVLYKLALVPMKQYPFFLAQITTFGYVVIYFSILYTRYLMGIVTDEMISLPKYRFLFI-GMLEALGVA  176 (431)
Q Consensus        98 ~~~~~li~Gs~n~v~~K~~~~~~~~~Pffla~l~~~~~~ll~~~il~~r~~~~~~~~~~~~~p~~~~~ii-glld~~~~~  176 (431)
                      +++.-+.+| ...++.|+..+...  |-|.+.+-++........+. ....+-....+ ...+-|.|+++ |+.-..+-.
T Consensus         8 ALLsA~fa~-L~~iF~KIGl~~vd--p~~At~IRtiVi~~~l~~v~-~~~g~~~~~~~-~~~k~~lflilSGla~glswl   82 (140)
T COG2510           8 ALLSALFAG-LTPIFAKIGLEGVD--PDFATTIRTIVILIFLLIVL-LVTGNWQAGGE-IGPKSWLFLILSGLAGGLSWL   82 (140)
T ss_pred             HHHHHHHHH-HHHHHHHHhccccC--ccHHHHHHHHHHHHHHHHHH-HhcCceecccc-cCcceehhhhHHHHHHHHHHH
Confidence            333444444 78899999999885  66888875554322222111 11111111111 11122456666 544566777


Q ss_pred             HHHHhhccCCccHHHHHhhhhHHHHHHHHHHHhcCccchhHHHHHHHHhhheeEEe
Q 014092          177 SGMAAAAMLPGPAIPILSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVGVAV  232 (431)
Q Consensus       177 l~~~g~~~~~~~~~~IL~qs~i~~T~llS~~fLk~r~~~~qiiG~~lv~~GV~vv~  232 (431)
                      +.+.++..-+++...-++.+.+.+++++|++|||||++..+|+|+.++.+|++++.
T Consensus        83 ~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs  138 (140)
T COG2510          83 LYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS  138 (140)
T ss_pred             HHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence            88888887799988899999999999999999999999999999999999998874

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=98.32  E-value=0.00015  Score=71.11  Aligned_cols=272  Identities=14%  Similarity=0.067  Sum_probs=138.7

Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHhccCCChhHHHHHHHHHHHHHHH--HHHHHHHHhccccccccccCCCch-hhHHHH
Q 014092           93 QIIIISSAVTVTLAIANRVLYKLALVPMKQYPFFLAQITTFGYVVIY--FSILYTRYLMGIVTDEMISLPKYR-FLFIGM  169 (431)
Q Consensus        93 ~~i~i~~~~~li~Gs~n~v~~K~~~~~~~~~Pffla~l~~~~~~ll~--~~il~~r~~~~~~~~~~~~~p~~~-~~iigl  169 (431)
                      ..++.++...++|| .--..+|.... .+   -..-..-++.....+  ......|..+ ... +.++-|+.. .+..+.
T Consensus         7 ~Gil~~l~Ay~lwG-~lp~y~kll~~-~~---~~eIlahRviwS~~~~l~ll~~~r~~~-~~~-~~~~~p~~~~~~~l~a   79 (293)
T COG2962           7 KGILLALLAYLLWG-LLPLYFKLLEP-LP---ATEILAHRVIWSFPFMLALLFLLRQWR-ELK-QLLKQPKTLLMLALTA   79 (293)
T ss_pred             chhHHHHHHHHHHH-HHHHHHHHHcc-CC---HHHHHHHHHHHHHHHHHHHHHHHhhhH-HHH-HHHhCcHHHHHHHHHH
Confidence            55667999999999 66666676553 21   111111122211111  1111222111 111 122223222 233344


Q ss_pred             HHHHHHH-HHHHhhccCCccHHHHHhhhhHHHHHHHHHHHhcCccchhHHHHHHHHhhheeEEeccCCCCCCccccccch
Q 014092          170 LEALGVA-SGMAAAAMLPGPAIPILSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVGVAVASGSNSGQMLSRVDFL  248 (431)
Q Consensus       170 ld~~~~~-l~~~g~~~~~~~~~~IL~qs~i~~T~llS~~fLk~r~~~~qiiG~~lv~~GV~vv~~s~~~~~~~~~~~~~i  248 (431)
                      .....|. .+.++-.+-..--.++=.-..+.+.++++.+|+|||+++.||+++++..+||.+-.+..+         ++-
T Consensus        80 ~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g---------~lp  150 (293)
T COG2962          80 LLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLG---------SLP  150 (293)
T ss_pred             HHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcC---------CCc
Confidence            4444444 666665554444455556667999999999999999999999999999999998765332         122


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCccCceeehhhhhhHHHHHHHHHHHhhh----ccCCCCCCCchHhHhh
Q 014092          249 WPSMMIASSAFQAGASIIKEFIFDDAKKCLKGKSLDIFVVNSFGSGFQALFVLLFLPFLS----NLKGIPFAELPLYLKS  324 (431)
Q Consensus       249 g~~lillA~i~~A~s~V~~E~~f~~y~k~lk~~~~d~~~l~~w~~l~q~l~g~llLpi~~----~~~g~~~~~~~~~~~~  324 (431)
                      |+.+.  =++.+++-...+|+        +   ++|+..=-.    .|+++   ++|...    ..+.     -++    
T Consensus       151 wval~--la~sf~~Ygl~RK~--------~---~v~a~~g~~----lE~l~---l~p~al~yl~~l~~-----~~~----  201 (293)
T COG2962         151 WVALA--LALSFGLYGLLRKK--------L---KVDALTGLT----LETLL---LLPVALIYLLFLAD-----SGQ----  201 (293)
T ss_pred             HHHHH--HHHHHHHHHHHHHh--------c---CCchHHhHH----HHHHH---HhHHHHHHHHHHhc-----Cch----
Confidence            44433  35566777777763        2   355442222    34444   333321    1111     000    


Q ss_pred             hhHhhhccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHhHHHhhhHhhhcccCCCCCCCCCcHHH
Q 014092          325 GAGCLLNLGANTSGCNGAPLLPLLYIATNMAFNISMLRLMKISSAVVSSLVVMLSVPIAIYVLSLPLPYLPEGASLSPFF  404 (431)
Q Consensus       325 g~~c~~g~~~~~~~c~~a~~~~llyl~~~~~~n~~~~~l~k~~sA~~~sl~~~l~vPl~~~~fs~~~~~l~~gE~ls~~~  404 (431)
                          +...+.    -....+++..-.++-+--..+ ..--|+.+=.+..+.. ..-|..-.+.++.+    .||+++..+
T Consensus       202 ----~~~~~~----~~~~~LLv~aG~vTavpL~lf-~~aa~~lpls~~G~lq-Yi~Ptl~fllav~i----~~E~~~~~~  267 (293)
T COG2962         202 ----FLQQNA----NSLWLLLVLAGLVTAVPLLLF-AAAAKRLPLSTLGFLQ-YIEPTLMFLLAVLI----FGEPFDSDQ  267 (293)
T ss_pred             ----hhhcCC----chHHHHHHHhhHHHHHHHHHH-HHHHhcCCHHHHHHHH-HHHHHHHHHHHHHH----cCCCCCHHH
Confidence                000000    000011111111111111000 1112333334444432 34465555555433    489999999


Q ss_pred             HHHHHHHHhhheeecCCCC
Q 014092          405 LFGSVILLLGLTLYNLPQP  423 (431)
Q Consensus       405 liG~~lI~~Gv~lYn~~~~  423 (431)
                      +.+++.|-+|+++|....-
T Consensus       268 ~~~F~~IW~aL~l~~~d~l  286 (293)
T COG2962         268 LVTFAFIWLALALFSIDGL  286 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999999999987654

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=98.28  E-value=3.4e-06  Score=78.10  Aligned_cols=222  Identities=15%  Similarity=0.243  Sum_probs=135.7

Q ss_pred             HHHHHHHHHHHHHhhccCCccHHHHHhhhhHHHHHHHHHHHhcCccchhHHHHHHHHhhheeEEeccCCCCCCccccccc
Q 014092          168 GMLEALGVASGMAAAAMLPGPAIPILSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVGVAVASGSNSGQMLSRVDF  247 (431)
Q Consensus       168 glld~~~~~l~~~g~~~~~~~~~~IL~qs~i~~T~llS~~fLk~r~~~~qiiG~~lv~~GV~vv~~s~~~~~~~~~~~~~  247 (431)
                      ..+-+.+|++...++..++++..+-+.+...-|+-+++++.||+|+...|++++++.+.|++++...+.....     ++
T Consensus        60 ~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~a~-----e~  134 (290)
T KOG4314|consen   60 SIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEHAD-----EI  134 (290)
T ss_pred             EEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchhhh-----hh
Confidence            3344668888899999999999999999999999999999999999999999999999999998865543222     68


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcc-CceeehhhhhhHHHHHHHHHHHhhhccCCCCCCCchHhHhhhh
Q 014092          248 LWPSMMIASSAFQAGASIIKEFIFDDAKKCLKGKSL-DIFVVNSFGSGFQALFVLLFLPFLSNLKGIPFAELPLYLKSGA  326 (431)
Q Consensus       248 ig~~lillA~i~~A~s~V~~E~~f~~y~k~lk~~~~-d~~~l~~w~~l~q~l~g~llLpi~~~~~g~~~~~~~~~~~~g~  326 (431)
                      +|+...+.|+...|+--|..|+..-+.       +. |.-......+++..++... -|+...+.|.  +.+++.....|
T Consensus       135 iGi~~AV~SA~~aAlYKV~FK~~iGnA-------n~Gdaa~FmS~LGF~NL~~~~~-~~lIL~~T~V--E~~qsFA~~PW  204 (290)
T KOG4314|consen  135 IGIACAVGSAFMAALYKVLFKMFIGNA-------NFGDAAHFMSCLGFFNLCFISF-PALILAFTGV--EHLQSFAAAPW  204 (290)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhccC-------cchhHHHHHHHHHHHHHHHHhh-hHHHHHHhch--HHHHHHhhCCc
Confidence            999999999999998888877644221       11 2222223333344333211 1111111121  12222223334


Q ss_pred             HhhhccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHhHHHhhhHhhhcccCCCCCCCCCcHHHHH
Q 014092          327 GCLLNLGANTSGCNGAPLLPLLYIATNMAFNISMLRLMKISSAVVSSLVVMLSVPIAIYVLSLPLPYLPEGASLSPFFLF  406 (431)
Q Consensus       327 ~c~~g~~~~~~~c~~a~~~~llyl~~~~~~n~~~~~l~k~~sA~~~sl~~~l~vPl~~~~fs~~~~~l~~gE~ls~~~li  406 (431)
                      .|+-|          +   ..+.+++|+.-|+-.. +   ......++-..+.+|.-..+ .+.+    .+-.++...++
T Consensus       205 G~l~G----------~---A~L~lAFN~~iN~Gia-L---~~PilISiG~l~~iP~Naai-DiL~----q~l~~ntl~La  262 (290)
T KOG4314|consen  205 GCLCG----------A---AGLSLAFNFLINFGIA-L---LNPILISIGMLCGIPGNAAI-DILF----QELEFNTLFLA  262 (290)
T ss_pred             hhhhh----------H---HHHHHHHhhheeehhh-h---hchhhheehheecCcchhHH-HHHH----HHHHHHHHHHH
Confidence            43322          1   1234444444432211 1   12233333222334443332 1111    24456778999


Q ss_pred             HHHHHHhhheeecCCCCCcc
Q 014092          407 GSVILLLGLTLYNLPQPAKR  426 (431)
Q Consensus       407 G~~lI~~Gv~lYn~~~~~~~  426 (431)
                      |.+++++|.++.-.+.++.+
T Consensus       263 ~T~iI~i~FiLiiiP~d~~e  282 (290)
T KOG4314|consen  263 ATCIICIGFILIIIPEDKDE  282 (290)
T ss_pred             HHHHHHHhHHheecccchhh
Confidence            99999999999887776643

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=98.22  E-value=5.1e-05  Score=75.86  Aligned_cols=70  Identities=27%  Similarity=0.471  Sum_probs=61.8

Q ss_pred             hhHHHHHH-HHHHHHHHHhhccCCccHHHHHhhhhHHHHHHHHHHHhcCccchhHHHHHHHHhhheeEEec
Q 014092          164 FLFIGMLE-ALGVASGMAAAAMLPGPAIPILSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVGVAVA  233 (431)
Q Consensus       164 ~~iiglld-~~~~~l~~~g~~~~~~~~~~IL~qs~i~~T~llS~~fLk~r~~~~qiiG~~lv~~GV~vv~~  233 (431)
                      ..+.|++- .++..+.+.++.+.|.++.+-+....++++++++.++||||++++.++|++++++|.++++.
T Consensus        52 ~W~~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~  122 (300)
T PF05653_consen   52 LWWIGLLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVI  122 (300)
T ss_pred             HHHHHHHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEE
Confidence            45556554 56888888999999999999999999999999999999999999999999999999877654

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=98.13  E-value=6.5e-05  Score=72.37  Aligned_cols=132  Identities=17%  Similarity=0.185  Sum_probs=86.5

Q ss_pred             hHHHHHHHHHHHHhhhhHHHHHHHHhccCCChhHHHHHH-HHHHHHHHHHHHHHHHHhccccccccccCCCchhhHHHHH
Q 014092           92 SQIIIISSAVTVTLAIANRVLYKLALVPMKQYPFFLAQI-TTFGYVVIYFSILYTRYLMGIVTDEMISLPKYRFLFIGML  170 (431)
Q Consensus        92 ~~~i~i~~~~~li~Gs~n~v~~K~~~~~~~~~Pffla~l-~~~~~~ll~~~il~~r~~~~~~~~~~~~~p~~~~~iigll  170 (431)
                      ...+.++++..+.|+ .+.+..|...++.+..+...... +.++. ++..+..+...+.  ...+  ...+...+..|.+
T Consensus       127 ~~G~~~~l~a~~~~a-~~~~~~k~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~--~~~~--~~~~~~~~~~~~~  200 (260)
T TIGR00950       127 PAGLLLGLGSGISFA-LGTVLYKRLVKKEGPELLQFTGWVLLLGA-LLLLPFAWFLGPN--PQAL--SLQWGALLYLGLI  200 (260)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHhHHhhcCCchHHHHHHHHHHHHH-HHHHHHHHhcCCC--CCcc--hHHHHHHHHHHHH
Confidence            345556777777777 56666777665544333333322 22222 2222222221110  0000  0011224556777


Q ss_pred             H-HHHHHHHHHhhccCCccHHHHHhhhhHHHHHHHHHHHhcCccchhHHHHHHHHhhhee
Q 014092          171 E-ALGVASGMAAAAMLPGPAIPILSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVG  229 (431)
Q Consensus       171 d-~~~~~l~~~g~~~~~~~~~~IL~qs~i~~T~llS~~fLk~r~~~~qiiG~~lv~~GV~  229 (431)
                      . ..++.+.+.+..+++++..+++..+.+++++++++++++||++..|++|++++++|+.
T Consensus       201 ~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~~  260 (260)
T TIGR00950       201 GTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAVL  260 (260)
T ss_pred             HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence            5 5688899999999999999999999999999999999999999999999999999973

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=97.93  E-value=0.0099  Score=57.49  Aligned_cols=218  Identities=11%  Similarity=-0.000  Sum_probs=133.8

Q ss_pred             hhhHHHHHHHHHHHHHHHhhccCCccHHHHHhhhhHHHHHHHHHHHhcCccchhHHHHHHHHhhheeEEeccCCCCCCcc
Q 014092          163 RFLFIGMLEALGVASGMAAAAMLPGPAIPILSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVGVAVASGSNSGQML  242 (431)
Q Consensus       163 ~~~iiglld~~~~~l~~~g~~~~~~~~~~IL~qs~i~~T~llS~~fLk~r~~~~qiiG~~lv~~GV~vv~~s~~~~~~~~  242 (431)
                      ..++.|..-..-|+++|.+...+|-++..-+--+.+...++++    .||..-.-|++  +.+.|+.+..-.+.+.+   
T Consensus        73 ~~~~yGvsLg~MNl~FY~si~riPlGiAVAiEF~GPL~vA~~~----sRr~~d~vwva--LAvlGi~lL~p~~~~~~---  143 (292)
T COG5006          73 ALLAYGVSLGGMNLLFYLSIERIPLGIAVAIEFTGPLAVALLS----SRRLRDFVWVA--LAVLGIWLLLPLGQSVW---  143 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccHHHHHHHh----ccchhhHHHHH--HHHHHHHhheeccCCcC---
Confidence            4667799999999999999999999988877777766555543    46555444554  56667666553332222   


Q ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCccCceeehhhhhhHHHHHHHH-HHHhhhccCCCCCCCchHh
Q 014092          243 SRVDFLWPSMMIASSAFQAGASIIKEFIFDDAKKCLKGKSLDIFVVNSFGSGFQALFVLL-FLPFLSNLKGIPFAELPLY  321 (431)
Q Consensus       243 ~~~~~ig~~lillA~i~~A~s~V~~E~~f~~y~k~lk~~~~d~~~l~~w~~l~q~l~g~l-lLpi~~~~~g~~~~~~~~~  321 (431)
                       +...+|..+-+.+..|||+-.+.-+|         -++..|--.-.+    .+++++.+ .+|+-....|... ..++.
T Consensus       144 -~lDp~Gv~~Al~AG~~Wa~YIv~G~r---------~g~~~~g~~g~a----~gm~vAaviv~Pig~~~ag~~l-~~p~l  208 (292)
T COG5006         144 -SLDPVGVALALGAGACWALYIVLGQR---------AGRAEHGTAGVA----VGMLVAALIVLPIGAAQAGPAL-FSPSL  208 (292)
T ss_pred             -cCCHHHHHHHHHHhHHHHHHHHHcch---------hcccCCCchHHH----HHHHHHHHHHhhhhhhhcchhh-cChHH
Confidence             12467999999999999999998664         232233222223    45555543 4566332112000 00111


Q ss_pred             HhhhhHhhhccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHhHHHhhhHhhhcccCCCCCCCCCc
Q 014092          322 LKSGAGCLLNLGANTSGCNGAPLLPLLYIATNMAFNISMLRLMKISSAVVSSLVVMLSVPIAIYVLSLPLPYLPEGASLS  401 (431)
Q Consensus       322 ~~~g~~c~~g~~~~~~~c~~a~~~~llyl~~~~~~n~~~~~l~k~~sA~~~sl~~~l~vPl~~~~fs~~~~~l~~gE~ls  401 (431)
                      +-.+                    ...-+.+...=+..=+.-+++.++...++..+ .-|.++-+.+..+    .||.+|
T Consensus       209 l~la--------------------LgvavlSSalPYsLEmiAL~rlp~~~F~~LlS-LePa~aAl~G~i~----L~e~ls  263 (292)
T COG5006         209 LPLA--------------------LGVAVLSSALPYSLEMIALRRLPARTFGTLLS-LEPALAALSGLIF----LGETLT  263 (292)
T ss_pred             HHHH--------------------HHHHHHhcccchHHHHHHHhhCChhHHHHHHH-hhHHHHHHHHHHH----hcCCCC
Confidence            1000                    00111122222223355667777777777554 4588887776554    499999


Q ss_pred             HHHHHHHHHHHhhheeecCCCCCccccc
Q 014092          402 PFFLFGSVILLLGLTLYNLPQPAKRSSK  429 (431)
Q Consensus       402 ~~~liG~~lI~~Gv~lYn~~~~~~~~~~  429 (431)
                      +.|+.|.+.|+.+..--....+|+.+.|
T Consensus       264 ~~qwlaI~~ViaAsaG~~lt~~~~~~~~  291 (292)
T COG5006         264 LIQWLAIAAVIAASAGSTLTARKPAVAE  291 (292)
T ss_pred             HHHHHHHHHHHHHHhccccccCCCCCCC
Confidence            9999999999999987777666655443

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.82  E-value=0.00026  Score=70.28  Aligned_cols=70  Identities=24%  Similarity=0.415  Sum_probs=59.2

Q ss_pred             hhHHHHHH-HHHHHHHHHhhccCCccHHHHHhhhhHHHHHHHHHHHhcCccchhHHHHHHHHhhheeEEec
Q 014092          164 FLFIGMLE-ALGVASGMAAAAMLPGPAIPILSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVGVAVA  233 (431)
Q Consensus       164 ~~iiglld-~~~~~l~~~g~~~~~~~~~~IL~qs~i~~T~llS~~fLk~r~~~~qiiG~~lv~~GV~vv~~  233 (431)
                      ....|++- .++...-+.++.+-|+++..-|....++.++++++++||||+++.-.+||+++++|-.+++.
T Consensus        66 ~Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~  136 (335)
T KOG2922|consen   66 LWWAGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVI  136 (335)
T ss_pred             HHHHHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEE
Confidence            44566665 44666777777888999999999999999999999999999999999999999999665543

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.82  E-value=2.2e-06  Score=82.90  Aligned_cols=204  Identities=16%  Similarity=0.197  Sum_probs=121.3

Q ss_pred             HhhccCCccHHHHHhhhhHHHHHHHHHHHhcCccchhHHHHHHHHhhheeEEeccCCCCCCccccccchHHHHHHHHHHH
Q 014092          180 AAAAMLPGPAIPILSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVGVAVASGSNSGQMLSRVDFLWPSMMIASSAF  259 (431)
Q Consensus       180 ~g~~~~~~~~~~IL~qs~i~~T~llS~~fLk~r~~~~qiiG~~lv~~GV~vv~~s~~~~~~~~~~~~~ig~~lillA~i~  259 (431)
                      ..+.|++.+.+++=|+...+||+++++.+||+|=+..-..||.+++.|-.+-+    +.++..+..++.|.++-++|++.
T Consensus       121 lcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGv----dqE~~~~~ls~~GvifGVlaSl~  196 (347)
T KOG1442|consen  121 LCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGV----DQEGSTGTLSWIGVIFGVLASLA  196 (347)
T ss_pred             eehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehheecc----ccccccCccchhhhHHHHHHHHH
Confidence            34567788888888999999999999999999999999999999988876533    22212233468899999999999


Q ss_pred             HHHHHHHHHHhhhhhhhhccCCccCceeehhhhhhHHHHHHHHHHHhhhccCCCCCCCchHhHhhhhHhhhccCCCCCCC
Q 014092          260 QAGASIIKEFIFDDAKKCLKGKSLDIFVVNSFGSGFQALFVLLFLPFLSNLKGIPFAELPLYLKSGAGCLLNLGANTSGC  339 (431)
Q Consensus       260 ~A~s~V~~E~~f~~y~k~lk~~~~d~~~l~~w~~l~q~l~g~llLpi~~~~~g~~~~~~~~~~~~g~~c~~g~~~~~~~c  339 (431)
                      -|+-.+|.++..       ..-+-..|.+.....++..+.   ++|..-.. |    ++++..        +..    +.
T Consensus       197 vAlnaiytkk~l-------~~v~~~iw~lt~ynnv~a~lL---flpll~ln-g----e~~~v~--------~~~----~l  249 (347)
T KOG1442|consen  197 VALNAIYTKKVL-------PPVGDCIWRLTAYNNVNALLL---FLPLLILN-G----EFQAVV--------GFP----HL  249 (347)
T ss_pred             HHHHHHhhheec-------ccccCeehhhHHHHHHHHHHH---HHHHHHHc-c----hHHHHc--------Ccc----cc
Confidence            999999987532       222234566666556555554   45554322 1    221110        000    00


Q ss_pred             CCccHHHHHHHHHHHHHHHHH--HHHhcccchHHHHHHHHhH---HHhhhHhhhcccCCCCCCCCCcHHHHHHHHHHHhh
Q 014092          340 NGAPLLPLLYIATNMAFNISM--LRLMKISSAVVSSLVVMLS---VPIAIYVLSLPLPYLPEGASLSPFFLFGSVILLLG  414 (431)
Q Consensus       340 ~~a~~~~llyl~~~~~~n~~~--~~l~k~~sA~~~sl~~~l~---vPl~~~~fs~~~~~l~~gE~ls~~~liG~~lI~~G  414 (431)
                      ....++..+.+.....|.+-+  ..=+|-.|+.+-++..+.+   =.+.++++        .+|.-+.+-+-|-.+++.|
T Consensus       250 ~a~~Fw~~mtLsglfgF~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~--------y~E~ks~lwwtsn~~vLvg  321 (347)
T KOG1442|consen  250 PAIKFWILMTLSGLFGFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAY--------YSETKSGLWWTSNIVVLVG  321 (347)
T ss_pred             hHHHHHHHHHHHHHHHHHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHH--------HHHHhhhheeeeeEEEEeh
Confidence            001112222222222222211  1222444444444432211   01223322        2777777777888899999


Q ss_pred             heeecCCC
Q 014092          415 LTLYNLPQ  422 (431)
Q Consensus       415 v~lYn~~~  422 (431)
                      ...|.+.+
T Consensus       322 s~~YT~vk  329 (347)
T KOG1442|consen  322 SLAYTLVK  329 (347)
T ss_pred             hHHHHHHH
Confidence            99998664

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=97.77  E-value=0.00016  Score=61.76  Aligned_cols=63  Identities=13%  Similarity=0.076  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHhhccCCccHHHHHhhhhHHHHHHHHHHHhcCccchhHHHHHHHHhhheeEEe
Q 014092          170 LEALGVASGMAAAAMLPGPAIPILSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVGVAV  232 (431)
Q Consensus       170 ld~~~~~l~~~g~~~~~~~~~~IL~qs~i~~T~llS~~fLk~r~~~~qiiG~~lv~~GV~vv~  232 (431)
                      +.....++...++.+.|.+.+..+-+..++++++++++++|||++.+|++|+.++++|++++.
T Consensus        46 ~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         46 CLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            346677788899999999999999899999999999999999999999999999999987653

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=97.77  E-value=0.00041  Score=71.07  Aligned_cols=67  Identities=9%  Similarity=0.104  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHHHhhccCCccHHHHHhhhhHHHHHHHHHHHhcCccchhHHHHHHHHhhheeEEecc
Q 014092          168 GMLEALGVASGMAAAAMLPGPAIPILSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVGVAVAS  234 (431)
Q Consensus       168 glld~~~~~l~~~g~~~~~~~~~~IL~qs~i~~T~llS~~fLk~r~~~~qiiG~~lv~~GV~vv~~s  234 (431)
                      |+.-.+++.+.+.+..+.+++..++.....+++++++++++|+|+++..|++|++++++|+.++..+
T Consensus       263 ~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~  329 (358)
T PLN00411        263 AIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWG  329 (358)
T ss_pred             HHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhh
Confidence            5555567778889999999999999999999999999999999999999999999999999987643

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=97.59  E-value=0.00022  Score=70.11  Aligned_cols=67  Identities=19%  Similarity=0.298  Sum_probs=59.9

Q ss_pred             hhHH-HHHHHHHHHHHHHhhccCCccHHHHHhhhhHHHHHHHHHHHhcCccchhHHHHHHHHhhheeE
Q 014092          164 FLFI-GMLEALGVASGMAAAAMLPGPAIPILSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVGV  230 (431)
Q Consensus       164 ~~ii-glld~~~~~l~~~g~~~~~~~~~~IL~qs~i~~T~llS~~fLk~r~~~~qiiG~~lv~~GV~v  230 (431)
                      +... ++....++.+.+.+..+.+++..+.+.+..++++.+++++++||+++..|++|++++++|+.+
T Consensus       213 ~~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l  280 (281)
T TIGR03340       213 SATLGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV  280 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence            3344 455567888999999999999999999999999999999999999999999999999999865

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=97.59  E-value=0.0015  Score=57.72  Aligned_cols=67  Identities=19%  Similarity=0.276  Sum_probs=60.5

Q ss_pred             hhHHHHHHHHHHHHHHHhhccCCccHHHHHhhhhHHHHHHHHHHHhcCccchhHHHHHHHHhhheeE
Q 014092          164 FLFIGMLEALGVASGMAAAAMLPGPAIPILSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVGV  230 (431)
Q Consensus       164 ~~iiglld~~~~~l~~~g~~~~~~~~~~IL~qs~i~~T~llS~~fLk~r~~~~qiiG~~lv~~GV~v  230 (431)
                      ++..|++....|+..+.-..++++..+++++....+.+.++++++++|+++..|++|++++++|+++
T Consensus        84 ~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~  150 (153)
T PF03151_consen   84 LILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLL  150 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhe
Confidence            3444777778888888888999999999999999999999999999999999999999999999864

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=97.44  E-value=0.0025  Score=63.20  Aligned_cols=69  Identities=14%  Similarity=0.086  Sum_probs=61.9

Q ss_pred             hHHHHHHHH-HHHHHHHhhccCCccHHHHHhhhhHHHHHHHHHHHhcCccchhHHHHHHHHhhheeEEec
Q 014092          165 LFIGMLEAL-GVASGMAAAAMLPGPAIPILSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVGVAVA  233 (431)
Q Consensus       165 ~iiglld~~-~~~l~~~g~~~~~~~~~~IL~qs~i~~T~llS~~fLk~r~~~~qiiG~~lv~~GV~vv~~  233 (431)
                      +.+|++.+. ++.+.+.+..+++++..+++....+++++++++++++|+++..|++|++++++|++....
T Consensus       212 l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~  281 (293)
T PRK10532        212 LAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTL  281 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHh
Confidence            456777654 666889999999999999999999999999999999999999999999999999887643

>PRK11689 aromatic amino acid exporter; Provisional

Probab=97.36  E-value=0.0021  Score=63.82  Aligned_cols=69  Identities=17%  Similarity=0.102  Sum_probs=62.0

Q ss_pred             hHHHHHHHHHHHHHHHhhccCCccHHHHHhhhhHHHHHHHHHHHhcCccchhHHHHHHHHhhheeEEec
Q 014092          165 LFIGMLEALGVASGMAAAAMLPGPAIPILSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVGVAVA  233 (431)
Q Consensus       165 ~iiglld~~~~~l~~~g~~~~~~~~~~IL~qs~i~~T~llS~~fLk~r~~~~qiiG~~lv~~GV~vv~~  233 (431)
                      +..|+...+++.+.+.++.+++++..+++....+++++++++++++|+++..|++|+++++.|+.+...
T Consensus       219 ~~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~  287 (295)
T PRK11689        219 LLAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWL  287 (295)
T ss_pred             HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhh
Confidence            334655566888999999999999999999999999999999999999999999999999999887654

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=97.12  E-value=0.0071  Score=59.83  Aligned_cols=69  Identities=9%  Similarity=0.027  Sum_probs=61.6

Q ss_pred             hhHHHHHH-HHHHHHHHHhhccCCccHHHHHhhhhHHHHHHHHHHHhcCccchhHHHHHHHHhhheeEEe
Q 014092          164 FLFIGMLE-ALGVASGMAAAAMLPGPAIPILSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVGVAV  232 (431)
Q Consensus       164 ~~iiglld-~~~~~l~~~g~~~~~~~~~~IL~qs~i~~T~llS~~fLk~r~~~~qiiG~~lv~~GV~vv~  232 (431)
                      ...+|++- ..++.+.+.+..+.+++..+++....+++++++++++++|+++..|++|++++++|+.+..
T Consensus       215 i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~  284 (292)
T PRK11272        215 LGYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVT  284 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence            44456664 5578899999999999999999999999999999999999999999999999999987753

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=97.10  E-value=0.011  Score=58.62  Aligned_cols=70  Identities=19%  Similarity=0.248  Sum_probs=61.4

Q ss_pred             hhHHHHHHH-HHHHHHHHhhccCCccHHHHHhhhhHHHHHHHHHHHhcCccchhHHHHHHHHhhheeEEec
Q 014092          164 FLFIGMLEA-LGVASGMAAAAMLPGPAIPILSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVGVAVA  233 (431)
Q Consensus       164 ~~iiglld~-~~~~l~~~g~~~~~~~~~~IL~qs~i~~T~llS~~fLk~r~~~~qiiG~~lv~~GV~vv~~  233 (431)
                      ++.+|++-+ .++.+.+.+..+.++...+++....+++++++++++++|+++..|++|.+++++|+.+...
T Consensus       217 l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~  287 (299)
T PRK11453        217 LMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVF  287 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhc
Confidence            445576664 4777888899999999999999999999999999999999999999999999999987654

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=97.03  E-value=0.011  Score=58.84  Aligned_cols=68  Identities=19%  Similarity=0.218  Sum_probs=59.3

Q ss_pred             hhHHHHHHHHHHHHHHHhhccCCccHHHHHhhhhHHHHHHHHHHHhcCccchhHHHHHHHHhhheeEE
Q 014092          164 FLFIGMLEALGVASGMAAAAMLPGPAIPILSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVGVA  231 (431)
Q Consensus       164 ~~iiglld~~~~~l~~~g~~~~~~~~~~IL~qs~i~~T~llS~~fLk~r~~~~qiiG~~lv~~GV~vv  231 (431)
                      +++..++..+++.+.+.-....++....+....--+.|+++|.++.+++++..||+|+++++.|+.+-
T Consensus       228 l~~~s~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~  295 (303)
T PF08449_consen  228 LLLFSLTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLY  295 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHH
Confidence            45557777887777777777889999999999999999999999999999999999999999998753

; GO: 0055085 transmembrane transport

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=97.01  E-value=0.013  Score=51.38  Aligned_cols=70  Identities=17%  Similarity=0.155  Sum_probs=58.0

Q ss_pred             hhHHHHHH-HHHHHHHHHhhccCCccHHHHHhhhhHHHHHHHHHH--HhcCccchhHHHHHHHHhhheeEEec
Q 014092          164 FLFIGMLE-ALGVASGMAAAAMLPGPAIPILSQTFLVWQLGFSAV--LLGKKFSVTQIAGCLLVATGVGVAVA  233 (431)
Q Consensus       164 ~~iiglld-~~~~~l~~~g~~~~~~~~~~IL~qs~i~~T~llS~~--fLk~r~~~~qiiG~~lv~~GV~vv~~  233 (431)
                      ++..|+.- .++.++...++...|.+.+.-+......++++.++.  ++||+++..|++|++++++|+.++..
T Consensus        50 ~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~  122 (129)
T PRK02971         50 AVLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINL  122 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcc
Confidence            35555554 668889999999999999887777776778888874  89999999999999999999998754

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=96.95  E-value=0.002  Score=54.18  Aligned_cols=61  Identities=18%  Similarity=0.249  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHhcccchHHHHHHHHhHHHhhhHhhhcccCCCCCCCCCcHHHHHHHHHHHhhheeec
Q 014092          354 MAFNISMLRLMKISSAVVSSLVVMLSVPIAIYVLSLPLPYLPEGASLSPFFLFGSVILLLGLTLYN  419 (431)
Q Consensus       354 ~~~n~~~~~l~k~~sA~~~sl~~~l~vPl~~~~fs~~~~~l~~gE~ls~~~liG~~lI~~Gv~lYn  419 (431)
                      ...+.....-+|+.++...+.... ..|+...+++..+    .+|++++.+++|.++++.|+++.+
T Consensus        65 ~~~~~~~~~a~~~~~~~~~~~~~~-~~pv~~~i~~~~~----~~e~~~~~~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   65 ALAYLLYFYALKYISASIVSILQY-LSPVFAAILGWLF----LGERPSWRQIIGIILIIIGVVLIS  125 (126)
T ss_pred             ehHHHHHHHHHHhcchhHHHHHHH-HHHHHHHHHHHHH----cCCCCCHHHHHHHHHHHHHHHHHH
Confidence            344455566778888888888664 5688888887654    499999999999999999998653

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=96.89  E-value=0.015  Score=59.32  Aligned_cols=61  Identities=8%  Similarity=-0.023  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHhhccCCccHHHHHhhhhHHHHHHHHHHHhcCccchhHHHHHHHHhhheeE
Q 014092          170 LEALGVASGMAAAAMLPGPAIPILSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVGV  230 (431)
Q Consensus       170 ld~~~~~l~~~g~~~~~~~~~~IL~qs~i~~T~llS~~fLk~r~~~~qiiG~~lv~~GV~v  230 (431)
                      +..+.|...+.+..++++..+++.+....+++.++|+++++|+++..|++|++++++|+.+
T Consensus       285 ~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~l  345 (350)
T PTZ00343        285 WYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALL  345 (350)
T ss_pred             HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHH
Confidence            3344444455689999999999999999999999999999999999999999999999865

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=96.82  E-value=0.011  Score=58.82  Aligned_cols=70  Identities=16%  Similarity=0.118  Sum_probs=63.4

Q ss_pred             hhhHHHHHHHHHHHHHHHhhc-cCCccHHHHHhhhhHHHHHHHHHHHhcCccchhHH----HHHHHHhhheeEEe
Q 014092          163 RFLFIGMLEALGVASGMAAAA-MLPGPAIPILSQTFLVWQLGFSAVLLGKKFSVTQI----AGCLLVATGVGVAV  232 (431)
Q Consensus       163 ~~~iiglld~~~~~l~~~g~~-~~~~~~~~IL~qs~i~~T~llS~~fLk~r~~~~qi----iG~~lv~~GV~vv~  232 (431)
                      ...+.|++-..++.+.+.+.. +.+++...++.|..++.+.+++++++||+.+++|+    +|+++++.|+.++.
T Consensus       213 ~~~~~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~  287 (290)
T TIGR00776       213 LNILPGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILG  287 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHh
Confidence            344578887888889989999 99999999999999999999999999999999999    99999999988764

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=96.81  E-value=0.0041  Score=53.93  Aligned_cols=71  Identities=15%  Similarity=0.192  Sum_probs=61.3

Q ss_pred             hhhHHHHHHHHHHHHHHHhhccCCccH-HHHHhhhhHHHHHHHHHHHhcCccchhHHHHHHHHhhheeEEec
Q 014092          163 RFLFIGMLEALGVASGMAAAAMLPGPA-IPILSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVGVAVA  233 (431)
Q Consensus       163 ~~~iiglld~~~~~l~~~g~~~~~~~~-~~IL~qs~i~~T~llS~~fLk~r~~~~qiiG~~lv~~GV~vv~~  233 (431)
                      +.++.-.+..++.++...++.++|.+. +.+..+..+..+++++.++++|+++..|++|+.+.++|++.+-.
T Consensus        32 ~~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l  103 (120)
T PRK10452         32 GFILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKS  103 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhc
Confidence            445556667778888999999998877 67778999999999999999999999999999999999988743

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=96.79  E-value=0.015  Score=57.78  Aligned_cols=67  Identities=12%  Similarity=0.120  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHHHHhhccCCccHHHHHhhhhHHHHHHHHHHHhcCccchhHHHHHHHHhhheeEEec
Q 014092          167 IGMLEALGVASGMAAAAMLPGPAIPILSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVGVAVA  233 (431)
Q Consensus       167 iglld~~~~~l~~~g~~~~~~~~~~IL~qs~i~~T~llS~~fLk~r~~~~qiiG~~lv~~GV~vv~~  233 (431)
                      .|+....++.+.+.+..+.+++..+++....++++.++++++++|+++..|++|++++++|+.+...
T Consensus       219 ~g~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~  285 (296)
T PRK15430        219 AGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVM  285 (296)
T ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            4666677999999999999999999999999999999999999999999999999999998887654

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=96.59  E-value=0.0065  Score=52.04  Aligned_cols=70  Identities=13%  Similarity=0.048  Sum_probs=62.2

Q ss_pred             chhhHHHHHHHHHHHHHHHhhccCCccHHHHH-hhhhHHHHHHHHHHHhcCccchhHHHHHHHHhhheeEE
Q 014092          162 YRFLFIGMLEALGVASGMAAAAMLPGPAIPIL-SQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVGVA  231 (431)
Q Consensus       162 ~~~~iiglld~~~~~l~~~g~~~~~~~~~~IL-~qs~i~~T~llS~~fLk~r~~~~qiiG~~lv~~GV~vv  231 (431)
                      ++|+++=+++..+...+++.+...|.++..-+ |.....+|++.++++.+|..+++.++|++++++|+.++
T Consensus        42 ~~y~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc  112 (113)
T PF10639_consen   42 PKYIIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC  112 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence            46788888899999999999999999986655 79999999999988877888899999999999999886

Many members are annotated as potential transmembrane proteins.

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=96.54  E-value=0.016  Score=49.43  Aligned_cols=68  Identities=10%  Similarity=0.041  Sum_probs=59.3

Q ss_pred             hhHHHHHHHHHHHHHHHhhccCCccH-HHHHhhhhHHHHHHHHHHHhcCccchhHHHHHHHHhhheeEE
Q 014092          164 FLFIGMLEALGVASGMAAAAMLPGPA-IPILSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVGVA  231 (431)
Q Consensus       164 ~~iiglld~~~~~l~~~g~~~~~~~~-~~IL~qs~i~~T~llS~~fLk~r~~~~qiiG~~lv~~GV~vv  231 (431)
                      .++.-.+.....+++..++.+.|.++ +.+..+..+..+.+.++++.||+++..|++|+.+.+.|++.+
T Consensus        38 ~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l  106 (109)
T PRK10650         38 GILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI  106 (109)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence            34455566778888899999998776 889999999999999999999999999999999999998764

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=96.54  E-value=0.018  Score=57.05  Aligned_cols=59  Identities=15%  Similarity=0.048  Sum_probs=53.0

Q ss_pred             HHHHHHHhhccCCccHHHHHhhhhHHHHHHHHHHHhcCccchhHHHHHHHHhhheeEEe
Q 014092          174 GVASGMAAAAMLPGPAIPILSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVGVAV  232 (431)
Q Consensus       174 ~~~l~~~g~~~~~~~~~~IL~qs~i~~T~llS~~fLk~r~~~~qiiG~~lv~~GV~vv~  232 (431)
                      .+.+.+.+..++++...++.....+++++++++++++|+++..|++|.+++++|+.+..
T Consensus       234 ~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~  292 (302)
T TIGR00817       234 YQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYS  292 (302)
T ss_pred             HHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHH
Confidence            33455568889999999999999999999999999999999999999999999998754

specificities overlap.

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=96.52  E-value=0.039  Score=53.11  Aligned_cols=70  Identities=27%  Similarity=0.354  Sum_probs=63.0

Q ss_pred             hhhHHHHHHH-HHHHHHHHhhccCCccHHHHHhhhhHHHHHHHHHHHhcCccchhHHHHHHHHhhheeEEe
Q 014092          163 RFLFIGMLEA-LGVASGMAAAAMLPGPAIPILSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVGVAV  232 (431)
Q Consensus       163 ~~~iiglld~-~~~~l~~~g~~~~~~~~~~IL~qs~i~~T~llS~~fLk~r~~~~qiiG~~lv~~GV~vv~  232 (431)
                      .+...|++.. .++++.+.+....++...+++..+.+++++++++++++|+++.+|++|+++++.|+.+..
T Consensus       216 ~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~  286 (292)
T COG0697         216 LLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLAS  286 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh
Confidence            3555677776 589999999999999999999999999999999999999999999999999999987764

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=96.41  E-value=0.014  Score=49.42  Aligned_cols=70  Identities=17%  Similarity=0.114  Sum_probs=61.4

Q ss_pred             chhhHHHHHHHHHHHHHHHhhccCCccH-HHHHhhhhHHHHHHHHHHHhcCccchhHHHHHHHHhhheeEE
Q 014092          162 YRFLFIGMLEALGVASGMAAAAMLPGPA-IPILSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVGVA  231 (431)
Q Consensus       162 ~~~~iiglld~~~~~l~~~g~~~~~~~~-~~IL~qs~i~~T~llS~~fLk~r~~~~qiiG~~lv~~GV~vv  231 (431)
                      +..++.-.+...+.+++-.++.++|.++ +.+..+..+.-+.+.+++++||+.+..|++|+.+.++|++..
T Consensus        31 ~~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~L  101 (106)
T COG2076          31 WPSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGL  101 (106)
T ss_pred             chHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHh
Confidence            3455566667778889999999998776 899999999999999999999999999999999999998765

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=96.32  E-value=0.015  Score=49.59  Aligned_cols=68  Identities=19%  Similarity=0.111  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHHHHHhhccCCccH-HHHHhhhhHHHHHHHHHHHhcCccchhHHHHHHHHhhheeEEec
Q 014092          166 FIGMLEALGVASGMAAAAMLPGPA-IPILSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVGVAVA  233 (431)
Q Consensus       166 iiglld~~~~~l~~~g~~~~~~~~-~~IL~qs~i~~T~llS~~fLk~r~~~~qiiG~~lv~~GV~vv~~  233 (431)
                      ..-.+...+.++...++.+.|.+. +.+..+..+..++++++++.||++++.|++|+.+.++|++.+-.
T Consensus        35 ~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l  103 (110)
T PRK09541         35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINL  103 (110)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            334445667777788888888777 67778899999999999999999999999999999999988743

>PRK11431 multidrug efflux system protein; Provisional

Probab=96.23  E-value=0.016  Score=49.00  Aligned_cols=67  Identities=18%  Similarity=0.060  Sum_probs=58.5

Q ss_pred             hHHHHHHHHHHHHHHHhhccCCccH-HHHHhhhhHHHHHHHHHHHhcCccchhHHHHHHHHhhheeEE
Q 014092          165 LFIGMLEALGVASGMAAAAMLPGPA-IPILSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVGVA  231 (431)
Q Consensus       165 ~iiglld~~~~~l~~~g~~~~~~~~-~~IL~qs~i~~T~llS~~fLk~r~~~~qiiG~~lv~~GV~vv  231 (431)
                      ++.-.+...+.+++..++..+|.++ +.+..+..+..+.+.+.++.||+.+..|++|+.+.++|++.+
T Consensus        33 ~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l  100 (105)
T PRK11431         33 IITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGL  100 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Confidence            3445556778888888888887766 889999999999999999999999999999999999999875

>TIGR00803 nst UDP-galactose transporter

Probab=96.17  E-value=0.085  Score=49.93  Aligned_cols=67  Identities=16%  Similarity=0.115  Sum_probs=59.8

Q ss_pred             hhHHHHHHHHHHHHHHHhhccCCccHHHHHhhhhHHHHHHHHHHHhcCccchhHHHHHHHHhhheeE
Q 014092          164 FLFIGMLEALGVASGMAAAAMLPGPAIPILSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVGV  230 (431)
Q Consensus       164 ~~iiglld~~~~~l~~~g~~~~~~~~~~IL~qs~i~~T~llS~~fLk~r~~~~qiiG~~lv~~GV~v  230 (431)
                      ...+.++.+.++.+..+-..+.+.....+......+++.++|.++.+++++..||+|+.+++.|+.+
T Consensus       155 ~~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l  221 (222)
T TIGR00803       155 VWIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL  221 (222)
T ss_pred             HHHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence            4455777888888888888888999999999999999999999999999999999999999999764

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=96.09  E-value=0.94  Score=44.69  Aligned_cols=101  Identities=16%  Similarity=0.026  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHHHHhhccCCccHHH-HHhhhhHHHHHHHHHHHhcCccchhHHH----HHHHHhhheeEEeccCCCCCCc-
Q 014092          168 GMLEALGVASGMAAAAMLPGPAIP-ILSQTFLVWQLGFSAVLLGKKFSVTQIA----GCLLVATGVGVAVASGSNSGQM-  241 (431)
Q Consensus       168 glld~~~~~l~~~g~~~~~~~~~~-IL~qs~i~~T~llS~~fLk~r~~~~qii----G~~lv~~GV~vv~~s~~~~~~~-  241 (431)
                      |++=+++|..++.+..+...+... +=.+.+.+.+.++++++++|--+..+++    ++++.++|+.+....+.+++.. 
T Consensus        52 G~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~~~~~  131 (269)
T PF06800_consen   52 GAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKSDKSS  131 (269)
T ss_pred             HHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhccccccccccc
Confidence            777789999999998888666644 3357889999999999999987766655    7778888988887665443321 


Q ss_pred             cccccchHHHHHHHHHHHHHHHHHHHH
Q 014092          242 LSRVDFLWPSMMIASSAFQAGASIIKE  268 (431)
Q Consensus       242 ~~~~~~ig~~lillA~i~~A~s~V~~E  268 (431)
                      ...+..-|....+++.+-+-.-.+..+
T Consensus       132 ~~~~~~kgi~~Ll~stigy~~Y~~~~~  158 (269)
T PF06800_consen  132 SKSNMKKGILALLISTIGYWIYSVIPK  158 (269)
T ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHH
Confidence            122345577888889888877777765

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=95.69  E-value=0.13  Score=50.67  Aligned_cols=68  Identities=18%  Similarity=0.143  Sum_probs=57.7

Q ss_pred             chhhHHHHHHHHHHHHHHHhhccCCccHHHHHhhhhHHHHHHHHHHHhcCccchhHH----HHHHHHhhhee
Q 014092          162 YRFLFIGMLEALGVASGMAAAAMLPGPAIPILSQTFLVWQLGFSAVLLGKKFSVTQI----AGCLLVATGVG  229 (431)
Q Consensus       162 ~~~~iiglld~~~~~l~~~g~~~~~~~~~~IL~qs~i~~T~llS~~fLk~r~~~~qi----iG~~lv~~GV~  229 (431)
                      ++=.+-|++-..+|++++++.........-.+.|+.++.+.+-+.++|||+=+++|+    +|++++++|.+
T Consensus       196 ~~nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~i  267 (269)
T PF06800_consen  196 WKNILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAI  267 (269)
T ss_pred             HHhhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhh
Confidence            344677999999999999999999999999999999999999999999998777765    46666666654

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=95.51  E-value=0.1  Score=49.74  Aligned_cols=74  Identities=12%  Similarity=0.167  Sum_probs=61.1

Q ss_pred             hhhHHHHHHHHHHHHHHHhhccCCccHHHHHhhhhHHHHHHHHHHHhcCccchhHHHHHHHHhhheeEEeccCC
Q 014092          163 RFLFIGMLEALGVASGMAAAAMLPGPAIPILSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVGVAVASGS  236 (431)
Q Consensus       163 ~~~iiglld~~~~~l~~~g~~~~~~~~~~IL~qs~i~~T~llS~~fLk~r~~~~qiiG~~lv~~GV~vv~~s~~  236 (431)
                      +...+.++-+..-+-.-.+++|.+.+++.++....|+..+..-..+.|.|.+-......++.++.-++..+++.
T Consensus        70 ~WfpiSfLLv~MIyt~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~  143 (309)
T COG5070          70 KWFPISFLLVVMIYTSSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQ  143 (309)
T ss_pred             hhcCHHHHHHHHHHhcccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchh
Confidence            34566777766666667788999999999999999999999999999999999999999888887666555443

>COG2510 Predicted membrane protein [Function unknown]

Probab=95.46  E-value=0.095  Score=45.80  Aligned_cols=56  Identities=27%  Similarity=0.309  Sum_probs=39.5

Q ss_pred             HHHHHhcccc-hHHHHHHHHhHHHhhhHhhhcccCCCCCCCCCcHHHHHHHHHHHhhheeecC
Q 014092          359 SMLRLMKISS-AVVSSLVVMLSVPIAIYVLSLPLPYLPEGASLSPFFLFGSVILLLGLTLYNL  420 (431)
Q Consensus       359 ~~~~l~k~~s-A~~~sl~~~l~vPl~~~~fs~~~~~l~~gE~ls~~~liG~~lI~~Gv~lYn~  420 (431)
                      ++++-+|.+. +.+.++ +... |+.+.+++..+    .||+++..+.+|.++|.+|.++...
T Consensus        83 ~Yf~ALk~G~as~VvPl-dk~s-vvl~~lls~lf----L~E~ls~~~~iG~~LI~~Gailvs~  139 (140)
T COG2510          83 LYFRALKKGKASRVVPL-DKTS-VVLAVLLSILF----LGERLSLPTWIGIVLIVIGAILVSL  139 (140)
T ss_pred             HHHHHHhcCCcceEEEc-cccc-HHHHHHHHHHH----hcCCCCHHHHHHHHHHHhCeeeEec
Confidence            3344555554 444555 5545 56666676544    4999999999999999999998754

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=95.19  E-value=0.071  Score=46.77  Aligned_cols=28  Identities=29%  Similarity=0.422  Sum_probs=25.6

Q ss_pred             CCCCcHHHHHHHHHHHhhheeecCCCCC
Q 014092          397 GASLSPFFLFGSVILLLGLTLYNLPQPA  424 (431)
Q Consensus       397 gE~ls~~~liG~~lI~~Gv~lYn~~~~~  424 (431)
                      +|++++.+++|.++|++|+++.+.++++
T Consensus        99 ~E~ls~~~~iGi~lIi~GV~lv~~~~~~  126 (129)
T PRK02971         99 NETFSLKKTLGVACIMLGVWLINLPTTK  126 (129)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHhccCCCC
Confidence            9999999999999999999999876554

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=95.15  E-value=0.6  Score=47.51  Aligned_cols=134  Identities=16%  Similarity=0.041  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHhccccccccccC--CCch---hhHH
Q 014092           93 QIIIISSAVTVTLAIANRVLYKLALVPMKQYPFFLAQITTFGYVVIYFSILYTRYLMGIVTDEMISL--PKYR---FLFI  167 (431)
Q Consensus        93 ~~i~i~~~~~li~Gs~n~v~~K~~~~~~~~~Pffla~l~~~~~~ll~~~il~~r~~~~~~~~~~~~~--p~~~---~~ii  167 (431)
                      ..=+++++..++.| ...+..|....+.+ ..-+++.+-.++.++ ..+......+     ++.++.  ++..   ++.-
T Consensus       168 ~GDll~l~~a~lya-~~nV~~E~~v~~~~-~~~~lg~~Glfg~ii-~~iq~~ile~-----~~i~~~~w~~~~~~~~v~~  239 (334)
T PF06027_consen  168 LGDLLALLGAILYA-VSNVLEEKLVKKAP-RVEFLGMLGLFGFII-SGIQLAILER-----SGIESIHWTSQVIGLLVGY  239 (334)
T ss_pred             hhHHHHHHHHHHHH-HHHHHHHHhcccCC-HHHHHHHHHHHHHHH-HHHHHHheeh-----hhhhccCCChhhHHHHHHH
Confidence            33355677777888 55556666665443 234444444445432 2222111111     111122  2111   1112


Q ss_pred             HHHHHHHHHHHHHhhccCCccHHHHHhhhhHHHHHHHHHHHhcCccchhHHHHHHHHhhheeEEecc
Q 014092          168 GMLEALGVASGMAAAAMLPGPAIPILSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVGVAVAS  234 (431)
Q Consensus       168 glld~~~~~l~~~g~~~~~~~~~~IL~qs~i~~T~llS~~fLk~r~~~~qiiG~~lv~~GV~vv~~s  234 (431)
                      +++...-+.+.-+.+..+++....+=.-+..++++++..++.++++++..++|.+++++|+++-...
T Consensus       240 ~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~  306 (334)
T PF06027_consen  240 ALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLA  306 (334)
T ss_pred             HHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEcc
Confidence            3333445556666677788888777778899999999999999999999999999999999988653

Some of the sequences in this family are annotated as putative membrane proteins.

>PRK13499 rhamnose-proton symporter; Provisional

Probab=94.79  E-value=3  Score=42.63  Aligned_cols=98  Identities=17%  Similarity=0.058  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHHHHhhccCCccH-HHHHhhhhHHHHHHHHHHHhcCcc-------chhHHHHHHHHhhheeEEecc----C
Q 014092          168 GMLEALGVASGMAAAAMLPGPA-IPILSQTFLVWQLGFSAVLLGKKF-------SVTQIAGCLLVATGVGVAVAS----G  235 (431)
Q Consensus       168 glld~~~~~l~~~g~~~~~~~~-~~IL~qs~i~~T~llS~~fLk~r~-------~~~qiiG~~lv~~GV~vv~~s----~  235 (431)
                      |++=.++|..+..+..+...++ ..|-.+.+.+.+.++..++++|--       ...=.+|++++++|+++....    +
T Consensus        80 G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~k~  159 (345)
T PRK13499         80 GALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQLKE  159 (345)
T ss_pred             HHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence            7777889999999998887777 456677889999999999987532       234577888999999988662    2


Q ss_pred             CCCCC--ccccccchHHHHHHHHHHHHHHHHH
Q 014092          236 SNSGQ--MLSRVDFLWPSMMIASSAFQAGASI  265 (431)
Q Consensus       236 ~~~~~--~~~~~~~ig~~lillA~i~~A~s~V  265 (431)
                      .+.+.  ..+.+.-.|+.+.++|.+.+++-+.
T Consensus       160 ~~~~~~~~~~~~~~KGi~ialisgi~~~~f~~  191 (345)
T PRK13499        160 RKMGIKKAEEFNLKKGLILAVMSGIFSACFSF  191 (345)
T ss_pred             cccccccccccchHhHHHHHHHHHHHHHHHHH
Confidence            21110  1123456788999999999988883

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=94.67  E-value=0.11  Score=42.68  Aligned_cols=56  Identities=16%  Similarity=0.076  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHHhhccCCccH-HHHHhhhhHHHHHHHHHHHhcCccchhHHHHHHHH
Q 014092          169 MLEALGVASGMAAAAMLPGPA-IPILSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLV  224 (431)
Q Consensus       169 lld~~~~~l~~~g~~~~~~~~-~~IL~qs~i~~T~llS~~fLk~r~~~~qiiG~~lv  224 (431)
                      .+...+.++...++.+.|.+. +.+..+..+..+.+.+.++.||+.+..|++|+.++
T Consensus        37 ~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   37 VGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence            356677788888999998877 58889999999999999999999999999998764

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>TIGR00688 rarD rarD protein

Probab=94.63  E-value=0.22  Score=48.08  Aligned_cols=137  Identities=18%  Similarity=0.079  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCccCceeehhhhhhHHHHHHHHH-HHhhhccCCCCCCCchHhHhhhhH
Q 014092          249 WPSMMIASSAFQAGASIIKEFIFDDAKKCLKGKSLDIFVVNSFGSGFQALFVLLF-LPFLSNLKGIPFAELPLYLKSGAG  327 (431)
Q Consensus       249 g~~lillA~i~~A~s~V~~E~~f~~y~k~lk~~~~d~~~l~~w~~l~q~l~g~ll-Lpi~~~~~g~~~~~~~~~~~~g~~  327 (431)
                      |..+.++|+++|+...+.-|.        +.  ++|+..+..    +..+++.+. +++......  ..+..+..+. . 
T Consensus         3 g~~~~i~a~~~wg~~~~~~k~--------~~--~~~~~~i~~----~R~~~a~~~l~~~~~~~~~--~~~~~~~~~~-~-   64 (256)
T TIGR00688         3 GIIVSLLASFLFGYMYYYSKL--------LK--PLPATDILG----HRMIWSFPFMLLSVTLFRQ--WAALIERLKR-I-   64 (256)
T ss_pred             cHHHHHHHHHHHHHHHHHHHH--------hc--cCCHHHHHH----HHHHHHHHHHHHHHHHHcc--hHHHHHHHhC-c-
Confidence            678899999999999999773        11  478877776    555555443 333221110  0000000000 0 


Q ss_pred             hhhccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHhHHHhhhHhhhcccCCCCCCCCCcHHHHHH
Q 014092          328 CLLNLGANTSGCNGAPLLPLLYIATNMAFNISMLRLMKISSAVVSSLVVMLSVPIAIYVLSLPLPYLPEGASLSPFFLFG  407 (431)
Q Consensus       328 c~~g~~~~~~~c~~a~~~~llyl~~~~~~n~~~~~l~k~~sA~~~sl~~~l~vPl~~~~fs~~~~~l~~gE~ls~~~liG  407 (431)
                           +.    . .......+..+....++.+...-+++.++..+++.. ...|+...+++..+    .+|++++.++.|
T Consensus        65 -----~~----~-~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~a~~l~-~~~Pi~~~lla~~~----l~Ek~~~~~~l~  129 (256)
T TIGR00688        65 -----QK----R-PLILSLLLCGLLIGFNWWLFIWAVNNGSSLEVSLGY-LINPLVMVALGRVF----LKERISRFQFIA  129 (256)
T ss_pred             -----cc----c-hHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHH-HHHHHHHHHHHHHH----HhcCCCHHHHHH
Confidence                 00    0 001111111222334455555667888888877754 56799988887554    499999999999


Q ss_pred             HHHHHhhheee
Q 014092          408 SVILLLGLTLY  418 (431)
Q Consensus       408 ~~lI~~Gv~lY  418 (431)
                      .++.+.|+.+.
T Consensus       130 ~~~~~~Gv~li  140 (256)
T TIGR00688       130 VIIATLGVISN  140 (256)
T ss_pred             HHHHHHHHHHH
Confidence            99999998765

This uncharacterized protein is predicted to have many membrane-spanning domains.

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=94.03  E-value=0.81  Score=46.87  Aligned_cols=140  Identities=13%  Similarity=0.130  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHhcc--CCChhHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCc---h-hhH
Q 014092           93 QIIIISSAVTVTLAIANRVLYKLALVP--MKQYPFFLAQITTFGYVVIYFSILYTRYLMGIVTDEMISLPKY---R-FLF  166 (431)
Q Consensus        93 ~~i~i~~~~~li~Gs~n~v~~K~~~~~--~~~~Pffla~l~~~~~~ll~~~il~~r~~~~~~~~~~~~~p~~---~-~~i  166 (431)
                      ..-+++++.-++-|+....+-|...++  --+.|.|+..+--|-+++ .++.++.-...+   +|..+.|..   - +++
T Consensus       247 lG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnlll-lwP~l~iL~~~~---~e~F~lP~~~q~~~vv~  322 (416)
T KOG2765|consen  247 LGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLL-LWPPLIILDFFG---EERFELPSSTQFSLVVF  322 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHH-HhHHHHHHHHhc---cCcccCCCCceeEeeeH
Confidence            344456677777775554444444433  123455655553333322 232222111112   222233332   2 444


Q ss_pred             HHHHH-HHHHHHHHHhhccCCccHHHHHhhhhHHHHHHHHHHHhcCccchhHHHHHHHHhhheeEEeccCC
Q 014092          167 IGMLE-ALGVASGMAAAAMLPGPAIPILSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVGVAVASGS  236 (431)
Q Consensus       167 iglld-~~~~~l~~~g~~~~~~~~~~IL~qs~i~~T~llS~~fLk~r~~~~qiiG~~lv~~GV~vv~~s~~  236 (431)
                      .++.+ .+..++-..|...|++-+..+=...+||..|+.=.++.++.++..+++|.+.+++|.+++-.++.
T Consensus       323 ~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~  393 (416)
T KOG2765|consen  323 NNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSE  393 (416)
T ss_pred             hhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecccc
Confidence            58777 45999999999999998888888899999999999999999999999999999999988876544

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=93.20  E-value=0.088  Score=50.58  Aligned_cols=75  Identities=17%  Similarity=0.214  Sum_probs=65.7

Q ss_pred             CchhhHHHHHHHHHHHHHHHhhccCCccHHHHHhhhhHHHHHHHHHHHhcCccchhHHHHHHHHhhheeEEeccC
Q 014092          161 KYRFLFIGMLEALGVASGMAAAAMLPGPAIPILSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVGVAVASG  235 (431)
Q Consensus       161 ~~~~~iiglld~~~~~l~~~g~~~~~~~~~~IL~qs~i~~T~llS~~fLk~r~~~~qiiG~~lv~~GV~vv~~s~  235 (431)
                      +|.+..+|++..+++.+.+.-..+-.+-.-+|...+-=+||.+.|+++.+..++.+||+|..+++.|+.+-...|
T Consensus       241 ~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~~G  315 (337)
T KOG1580|consen  241 FWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVVDG  315 (337)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhhcC
Confidence            467888899999999988888777777778888888999999999999999999999999999999988765444

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=91.98  E-value=1  Score=39.87  Aligned_cols=74  Identities=24%  Similarity=0.305  Sum_probs=53.5

Q ss_pred             cccCCCchhhHHHHHHHHHHHHHHHhhccCCccHHHH-HhhhhHHHHHHHHHH----HhcCccchhHHHHHHHHhhheeE
Q 014092          156 MISLPKYRFLFIGMLEALGVASGMAAAAMLPGPAIPI-LSQTFLVWQLGFSAV----LLGKKFSVTQIAGCLLVATGVGV  230 (431)
Q Consensus       156 ~~~~p~~~~~iiglld~~~~~l~~~g~~~~~~~~~~I-L~qs~i~~T~llS~~----fLk~r~~~~qiiG~~lv~~GV~v  230 (431)
                      .++.|||.+. -|++-+..-+...+......++...+ .-..++..++++-++    .-|++++.+|++|+++.++|+.+
T Consensus        60 ~~~~p~w~~l-GG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen   60 LSSVPWWAYL-GGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL  138 (138)
T ss_pred             hccCChHHhc-cHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence            4456766664 67777766677777777775555443 344567778888775    46788999999999999999863

>COG1742 Uncharacterized conserved protein [Function unknown]

Probab=91.92  E-value=2.8  Score=35.25  Aligned_cols=48  Identities=15%  Similarity=0.167  Sum_probs=38.7

Q ss_pred             cHHHHHhhhhHHHHHHHHHHHhcCccchhHHHHHHHHhhheeEEeccC
Q 014092          188 PAIPILSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVGVAVASG  235 (431)
Q Consensus       188 ~~~~IL~qs~i~~T~llS~~fLk~r~~~~qiiG~~lv~~GV~vv~~s~  235 (431)
                      -.+.--.+..|..+.+..+..=|+|++++.|+|.+++++|+.++...+
T Consensus        59 RvYAAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~p  106 (109)
T COG1742          59 RVYAAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGP  106 (109)
T ss_pred             hHHHHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCC
Confidence            344555566677788888888899999999999999999998887543

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=91.42  E-value=4  Score=39.59  Aligned_cols=59  Identities=19%  Similarity=0.140  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHHHHhhccCCccHHHHHhhhhHHHHHHHHHHHhcCccchhHHHHHHHH
Q 014092          166 FIGMLEALGVASGMAAAAMLPGPAIPILSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLV  224 (431)
Q Consensus       166 iiglld~~~~~l~~~g~~~~~~~~~~IL~qs~i~~T~llS~~fLk~r~~~~qiiG~~lv  224 (431)
                      ++-++++.++.+.-+-.-|.+.-.=..-....++.|.++|.++.+.+++..-.+|+.++
T Consensus       186 ~~i~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~V  244 (244)
T PF04142_consen  186 IVIFLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAALV  244 (244)
T ss_pred             HHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheecC
Confidence            34556777888777777788877788888889999999999999999999999987653

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=91.13  E-value=0.55  Score=45.73  Aligned_cols=62  Identities=19%  Similarity=0.149  Sum_probs=56.7

Q ss_pred             HHHH-HHHHHHHHHhhccCCccHHHHHhhhhHHHHHHHHHHHhcCccchhHHHHHHHHhhhee
Q 014092          168 GMLE-ALGVASGMAAAAMLPGPAIPILSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVG  229 (431)
Q Consensus       168 glld-~~~~~l~~~g~~~~~~~~~~IL~qs~i~~T~llS~~fLk~r~~~~qiiG~~lv~~GV~  229 (431)
                      |++. ++.+.+=++++.+.|...+.+|.+.-+.+.++..+++|+|+++..||+|++.++++.+
T Consensus       216 avlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsa  278 (292)
T COG5006         216 AVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASA  278 (292)
T ss_pred             HHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence            6665 5588899999999999999999999999999999999999999999999999888765

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=90.38  E-value=1.2  Score=37.98  Aligned_cols=58  Identities=10%  Similarity=0.132  Sum_probs=40.0

Q ss_pred             HHHHHHHhcccchHHHHHHHHhHHHhhhHhhhcccCCCCCCCCCcHHHHHHHHHHHhhheeec
Q 014092          357 NISMLRLMKISSAVVSSLVVMLSVPIAIYVLSLPLPYLPEGASLSPFFLFGSVILLLGLTLYN  419 (431)
Q Consensus       357 n~~~~~l~k~~sA~~~sl~~~l~vPl~~~~fs~~~~~l~~gE~ls~~~liG~~lI~~Gv~lYn  419 (431)
                      .......+|+.+..++.-... .-++...+.+..+    .||++++.+++|.++++.|+++..
T Consensus        51 ~~~~~~al~~iplg~Ay~~~~-l~~v~~~~~~~l~----f~E~ls~~~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         51 MVLWLLVLQNVPVGIAYPMLS-LNFVWVTLAAVKL----WHEPVSPRHWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHhhCChHHHHHHHH-HHHHHHHHHHHHH----hCCCCCHHHHHHHHHHHHHHHHHh
Confidence            334455667666665555444 3455555555443    499999999999999999997654

>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function

Probab=90.12  E-value=4.5  Score=34.26  Aligned_cols=49  Identities=16%  Similarity=0.190  Sum_probs=41.8

Q ss_pred             CccHHHHHhhhhHHHHHHHHHHHhcCccchhHHHHHHHHhhheeEEecc
Q 014092          186 PGPAIPILSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVGVAVAS  234 (431)
Q Consensus       186 ~~~~~~IL~qs~i~~T~llS~~fLk~r~~~~qiiG~~lv~~GV~vv~~s  234 (431)
                      .+=.+.-=.+..|..+.+..+.+=|+|++++.++|..++++|+.++...
T Consensus        56 fGRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~  104 (107)
T PF02694_consen   56 FGRVYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFA  104 (107)
T ss_pred             chhHHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEec
Confidence            3445666677788899999999999999999999999999999988754

; GO: 0016020 membrane

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=89.82  E-value=2.7  Score=36.45  Aligned_cols=30  Identities=23%  Similarity=0.198  Sum_probs=26.9

Q ss_pred             CCCCCcHHHHHHHHHHHhhheeecCCCCCc
Q 014092          396 EGASLSPFFLFGSVILLLGLTLYNLPQPAK  425 (431)
Q Consensus       396 ~gE~ls~~~liG~~lI~~Gv~lYn~~~~~~  425 (431)
                      .+|++++..++|.++++.|+++.|..++++
T Consensus        79 f~E~~s~~~~~gi~lIi~GVi~l~l~~~~~  108 (120)
T PRK10452         79 FDESLSLMKIAGLTTLVAGIVLIKSGTRKA  108 (120)
T ss_pred             hCCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Confidence            399999999999999999999999877554

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=89.74  E-value=0.57  Score=47.28  Aligned_cols=63  Identities=13%  Similarity=0.098  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHHHHhhccCCccHHHHHhhhhHHHHHHHHHHHhcCccchhHHHHHHHHhhheeE
Q 014092          168 GMLEALGVASGMAAAAMLPGPAIPILSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVGV  230 (431)
Q Consensus       168 glld~~~~~l~~~g~~~~~~~~~~IL~qs~i~~T~llS~~fLk~r~~~~qiiG~~lv~~GV~v  230 (431)
                      +++....|...+....++++-.+++.+...-.+..+.|+++++++.+..|.+|+++.++|+.+
T Consensus       242 sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~  304 (316)
T KOG1441|consen  242 SVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFL  304 (316)
T ss_pred             HHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHH
Confidence            555566777888888899999999999999999999999999999999999999999999875

>PRK02237 hypothetical protein; Provisional

Probab=88.38  E-value=7.7  Score=32.95  Aligned_cols=48  Identities=15%  Similarity=0.157  Sum_probs=40.8

Q ss_pred             ccHHHHHhhhhHHHHHHHHHHHhcCccchhHHHHHHHHhhheeEEecc
Q 014092          187 GPAIPILSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVGVAVAS  234 (431)
Q Consensus       187 ~~~~~IL~qs~i~~T~llS~~fLk~r~~~~qiiG~~lv~~GV~vv~~s  234 (431)
                      +=.+.-=.+..|..+.+..+..=|.|++++.++|..++++|+.++...
T Consensus        59 GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~  106 (109)
T PRK02237         59 GRVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYA  106 (109)
T ss_pred             hhHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheec
Confidence            445666677778888899999999999999999999999999887643

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=88.21  E-value=3.5  Score=40.92  Aligned_cols=136  Identities=16%  Similarity=0.104  Sum_probs=89.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCccCceeehhhhhhHHHHHHHHHHHhhhccCCCCCCCchHhHhhhh
Q 014092          247 FLWPSMMIASSAFQAGASIIKEFIFDDAKKCLKGKSLDIFVVNSFGSGFQALFVLLFLPFLSNLKGIPFAELPLYLKSGA  326 (431)
Q Consensus       247 ~ig~~lillA~i~~A~s~V~~E~~f~~y~k~lk~~~~d~~~l~~w~~l~q~l~g~llLpi~~~~~g~~~~~~~~~~~~g~  326 (431)
                      .-|.++.+.|.+.|+..-.|.+-        ++  ++++.++.++--+|...+...++....   +  +.++.+..++  
T Consensus         6 ~~Gil~~l~Ay~lwG~lp~y~kl--------l~--~~~~~eIlahRviwS~~~~l~ll~~~r---~--~~~~~~~~~~--   68 (293)
T COG2962           6 RKGILLALLAYLLWGLLPLYFKL--------LE--PLPATEILAHRVIWSFPFMLALLFLLR---Q--WRELKQLLKQ--   68 (293)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHH--------Hc--cCCHHHHHHHHHHHHHHHHHHHHHHHh---h--hHHHHHHHhC--
Confidence            45789999999999999999873        33  467777888777777766433332221   1  1122111111  


Q ss_pred             HhhhccCCCCCCCCCccHHHHHHHHHHHHHHHHHH-HHhcccchHHHHHHHHhHHHhhhHhhhcccCCCCCCCCCcHHHH
Q 014092          327 GCLLNLGANTSGCNGAPLLPLLYIATNMAFNISML-RLMKISSAVVSSLVVMLSVPIAIYVLSLPLPYLPEGASLSPFFL  405 (431)
Q Consensus       327 ~c~~g~~~~~~~c~~a~~~~llyl~~~~~~n~~~~-~l~k~~sA~~~sl~~~l~vPl~~~~fs~~~~~l~~gE~ls~~~l  405 (431)
                                    ...+..++.....+..|.+.+ .-.+++....+++-. +..|+..++.+..+    .+|+++..|.
T Consensus        69 --------------p~~~~~~~l~a~li~~nW~lfiWAvn~g~~leaSLGY-~InPL~~VllG~lf----lkErls~~Q~  129 (293)
T COG2962          69 --------------PKTLLMLALTALLIGLNWWLFIWAVNNGHVLEASLGY-FINPLVNVLLGRLF----LKERLSRLQW  129 (293)
T ss_pred             --------------cHHHHHHHHHHHHHHHHHHHhheecCCCchhHHHhHH-HHHHHHHHHHHHHH----HHhhccHHHH
Confidence                          111223333334455665553 355777888889854 77899999998765    4999999999


Q ss_pred             HHHHHHHhhheee
Q 014092          406 FGSVILLLGLTLY  418 (431)
Q Consensus       406 iG~~lI~~Gv~lY  418 (431)
                      ++.++..+|+..-
T Consensus       130 iAV~lA~~GV~~~  142 (293)
T COG2962         130 IAVGLAAAGVLIQ  142 (293)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998754

>PRK13499 rhamnose-proton symporter; Provisional

Probab=86.80  E-value=13  Score=38.17  Aligned_cols=67  Identities=9%  Similarity=0.063  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHHHHhhccCCcc----HHHHHhhhhHHHHHHHHHHHhcCccc------hhHHHHHHHHhhheeEEec
Q 014092          166 FIGMLEALGVASGMAAAAMLPGP----AIPILSQTFLVWQLGFSAVLLGKKFS------VTQIAGCLLVATGVGVAVA  233 (431)
Q Consensus       166 iiglld~~~~~l~~~g~~~~~~~----~~~IL~qs~i~~T~llS~~fLk~r~~------~~qiiG~~lv~~GV~vv~~  233 (431)
                      +-|++-..++++..++.......    .+.+-+|+.++++.+-.. +|||+=+      +.-++|+++.++|.+++..
T Consensus       265 l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~vliI~g~~lig~  341 (345)
T PRK13499        265 LAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCVVIILAANIVGL  341 (345)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHHHHHHHHHHHHHhh
Confidence            34777788999999988766333    334556999899998888 4887544      5567888888888776643

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=86.34  E-value=1.7  Score=42.85  Aligned_cols=69  Identities=13%  Similarity=0.258  Sum_probs=60.9

Q ss_pred             CchhhHHHHHHHHHHHHHHHhhccCCccHHHHHhhhhHHHHHHHHHHHhcCccchhHHHHHHHHhhhee
Q 014092          161 KYRFLFIGMLEALGVASGMAAAAMLPGPAIPILSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVG  229 (431)
Q Consensus       161 ~~~~~iiglld~~~~~l~~~g~~~~~~~~~~IL~qs~i~~T~llS~~fLk~r~~~~qiiG~~lv~~GV~  229 (431)
                      ++.+..+|++-..++.+..-|++.--++-.++++.+.+++..+.-.+|.++-+|++-|+|+++++...+
T Consensus       253 r~l~~~lGvfgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v  321 (346)
T KOG4510|consen  253 RWLFVNLGVFGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTV  321 (346)
T ss_pred             eEEEEEehhhhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHH
Confidence            355777899999999999999998888889999999999999999999999999999999877665443

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=85.87  E-value=3.1  Score=35.03  Aligned_cols=62  Identities=19%  Similarity=0.259  Sum_probs=44.4

Q ss_pred             HHHHHHHHhcccchHHHHHHHHhHHHhhhHhhhcccCCCCCCCCCcHHHHHHHHHHHhhheeecCCCC
Q 014092          356 FNISMLRLMKISSAVVSSLVVMLSVPIAIYVLSLPLPYLPEGASLSPFFLFGSVILLLGLTLYNLPQP  423 (431)
Q Consensus       356 ~n~~~~~l~k~~sA~~~sl~~~l~vPl~~~~fs~~~~~l~~gE~ls~~~liG~~lI~~Gv~lYn~~~~  423 (431)
                      ++.....-.++.++.+..+ . ...|+...+++..+    .+|+++...+.|.+++++|+++.+.+..
T Consensus        48 ~~~~~~~a~~~~~~~v~~i-~-~~~pi~~~ll~~~~----~~er~~~~~~~a~~l~~~Gv~li~~~~~  109 (113)
T PF13536_consen   48 AYLLFFYALSYAPALVAAI-F-SLSPIFTALLSWLF----FKERLSPRRWLAILLILIGVILIAWSDL  109 (113)
T ss_pred             HHHHHHHHHHhCcHHHHHH-H-HHHHHHHHHHHHHH----hcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence            3444455556666544433 2 35688888777554    4899999999999999999998876654

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=85.78  E-value=5.8  Score=33.77  Aligned_cols=27  Identities=22%  Similarity=0.357  Sum_probs=25.4

Q ss_pred             CCCCcHHHHHHHHHHHhhheeecCCCC
Q 014092          397 GASLSPFFLFGSVILLLGLTLYNLPQP  423 (431)
Q Consensus       397 gE~ls~~~liG~~lI~~Gv~lYn~~~~  423 (431)
                      +|++++..++|.++++.|+++.|..++
T Consensus        80 ~e~~~~~~~~gi~lIi~GVi~l~l~~~  106 (110)
T PRK09541         80 GQRLDLPAIIGMMLICAGVLVINLLSR  106 (110)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            999999999999999999999998765

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=85.32  E-value=5.2  Score=40.09  Aligned_cols=69  Identities=17%  Similarity=0.216  Sum_probs=58.8

Q ss_pred             chhhHHHHHHHHHHHHHHHhhccCCccHHHHHhhhhHHHHHHHHHHHhcCccchhHHHHHHHHhhheeE
Q 014092          162 YRFLFIGMLEALGVASGMAAAAMLPGPAIPILSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVGV  230 (431)
Q Consensus       162 ~~~~iiglld~~~~~l~~~g~~~~~~~~~~IL~qs~i~~T~llS~~fLk~r~~~~qiiG~~lv~~GV~v  230 (431)
                      +.+++.+.|.++++++.++-...-.+-....+..+-=.+++++|.+..+.+.+..||+|+.+++.|+..
T Consensus       242 ~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l  310 (327)
T KOG1581|consen  242 FDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFL  310 (327)
T ss_pred             HHHHHHHHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHH
Confidence            457778999999999988887766666677777777789999999999999999999999999988764

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=84.76  E-value=11  Score=37.85  Aligned_cols=29  Identities=14%  Similarity=-0.017  Sum_probs=25.1

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 014092          246 DFLWPSMMIASSAFQAGASIIKEFIFDDA  274 (431)
Q Consensus       246 ~~ig~~lillA~i~~A~s~V~~E~~f~~y  274 (431)
                      ..+|..+.++|+++.|.+.++||+...+-
T Consensus         5 ~~iGv~lav~ss~~~~~g~~lqk~~~~r~   33 (300)
T PF05653_consen    5 FYIGVLLAVVSSIFIAVGFNLQKKSHLRL   33 (300)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            57899999999999999999999866543

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	431
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	97.72
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	97.55
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	96.12
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	94.69

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=97.72  E-value=6.5e-05  Score=62.75  Aligned_cols=71  Identities=15%  Similarity=0.068  Sum_probs=61.1

Q ss_pred             hhHHHHHHHHHHHHHHHhhccCCccHHHHH-hhhhHHHHHHHHHHHhcCccchhHHHHHHHHhhheeEEecc
Q 014092          164 FLFIGMLEALGVASGMAAAAMLPGPAIPIL-SQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVGVAVAS  234 (431)
Q Consensus       164 ~~iiglld~~~~~l~~~g~~~~~~~~~~IL-~qs~i~~T~llS~~fLk~r~~~~qiiG~~lv~~GV~vv~~s  234 (431)
                      .+...++.....++...++.+.|.+...-+ ++..+.++++++++++||+++..|++|+.++++|++++...
T Consensus        33 ~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~  104 (110)
T 3b5d_A           33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL  104 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            333345567788889999999999998666 99999999999999999999999999999999999887543

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=97.55  E-value=6.1e-05  Score=65.51  Aligned_cols=70  Identities=16%  Similarity=0.079  Sum_probs=50.0

Q ss_pred             hhHHHHHHHHHHHHHHHhhccCCccHHHHH-hhhhHHHHHHHHHHHhcCccchhHHHHHHHHhhheeEEec
Q 014092          164 FLFIGMLEALGVASGMAAAAMLPGPAIPIL-SQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVGVAVA  233 (431)
Q Consensus       164 ~~iiglld~~~~~l~~~g~~~~~~~~~~IL-~qs~i~~T~llS~~fLk~r~~~~qiiG~~lv~~GV~vv~~  233 (431)
                      .++-.++..++.++...++.+.|.+....+ ++..+++++++++++++|+++..|++|++++++|++++..
T Consensus        33 ~~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~  103 (137)
T 2i68_A           33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINL  103 (137)
T ss_dssp             -CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            334455567788899999999999977666 9999999999999999999999999999999999998754

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=96.12  E-value=0.0032  Score=54.56  Aligned_cols=63  Identities=14%  Similarity=0.092  Sum_probs=36.7

Q ss_pred             HHHHHHHHhcccchHHHHHHHHhHHHhhhHhhhcccCCCCCCCCCcHHHHHHHHHHHhhheeecCCC
Q 014092          356 FNISMLRLMKISSAVVSSLVVMLSVPIAIYVLSLPLPYLPEGASLSPFFLFGSVILLLGLTLYNLPQ  422 (431)
Q Consensus       356 ~n~~~~~l~k~~sA~~~sl~~~l~vPl~~~~fs~~~~~l~~gE~ls~~~liG~~lI~~Gv~lYn~~~  422 (431)
                      ..++....+|+.+...+..+..-..|+.+.+++..+    .||++++.+++|.++|++|+++.+..+
T Consensus        43 s~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~----lgE~ls~~~~~Gi~LIi~GV~ll~~~~  105 (137)
T 2i68_A           43 SFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGF----FGQRLDLPAIIGMMLICAGVLIINLLS  105 (137)
T ss_dssp             HHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHH----HC------CHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            334445667777777665542345688888777654    499999999999999999999998654

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=94.69  E-value=0.078  Score=43.78  Aligned_cols=60  Identities=15%  Similarity=0.139  Sum_probs=42.3

Q ss_pred             HHHHHhcccchHHHHHHHHhHHHhhhHhhhcccCCCCCCCCCcHHHHHHHHHHHhhheeecCCC
Q 014092          359 SMLRLMKISSAVVSSLVVMLSVPIAIYVLSLPLPYLPEGASLSPFFLFGSVILLLGLTLYNLPQ  422 (431)
Q Consensus       359 ~~~~l~k~~sA~~~sl~~~l~vPl~~~~fs~~~~~l~~gE~ls~~~liG~~lI~~Gv~lYn~~~  422 (431)
                      +....+|+.+...+.-...-..|+...+.+..+    .+|++++.+++|.++++.|+++.+..+
T Consensus        46 ~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~----~~E~~s~~~~~Gi~lIi~Gv~~l~~~~  105 (110)
T 3b5d_A           46 LLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGF----FGQRLDLPAIIGMMLICAGVLIINLLS  105 (110)
T ss_pred             HHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHH----hCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            344566776666554432123466666666544    499999999999999999999998765

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00