Citrus Sinensis ID: 014125
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 430 | 2.2.26 [Sep-21-2011] | |||||||
| Q60525 | 538 | Telomerase Cajal body pro | N/A | no | 0.741 | 0.592 | 0.434 | 2e-77 | |
| Q8VC51 | 532 | Telomerase Cajal body pro | yes | no | 0.813 | 0.657 | 0.412 | 2e-76 | |
| Q5XII5 | 532 | Telomerase Cajal body pro | yes | no | 0.744 | 0.601 | 0.427 | 5e-76 | |
| Q9BUR4 | 548 | Telomerase Cajal body pro | yes | no | 0.869 | 0.682 | 0.400 | 4e-74 | |
| Q3SWZ7 | 540 | Telomerase Cajal body pro | yes | no | 0.716 | 0.570 | 0.421 | 8e-74 | |
| O59762 | 399 | Guanine nucleotide-bindin | yes | no | 0.634 | 0.684 | 0.305 | 7e-30 | |
| Q8YRI1 | 1526 | Uncharacterized WD repeat | yes | no | 0.627 | 0.176 | 0.242 | 9e-16 | |
| Q8YTC2 | 1258 | Uncharacterized WD repeat | no | no | 0.683 | 0.233 | 0.239 | 7e-13 | |
| Q8YV57 | 1683 | Uncharacterized WD repeat | no | no | 0.723 | 0.184 | 0.229 | 4e-12 | |
| Q54KL5 | 335 | WD repeat-containing prot | no | no | 0.620 | 0.797 | 0.248 | 6e-12 |
| >sp|Q60525|WAP53_MESAU Telomerase Cajal body protein 1 OS=Mesocricetus auratus GN=Wrap53 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 290 bits (742), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 147/338 (43%), Positives = 219/338 (64%), Gaps = 19/338 (5%)
Query: 50 YNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDS 109
+++FR S NFLKG KW+PDGS LT+S D TLRI++LP ++ + + D
Sbjct: 149 WSEFRAHS--ENFLKGCKWAPDGSCILTNSADNTLRIYNLPP-----ELYSATEQVDYAE 201
Query: 110 YEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDA 169
L + EG+++YD+CW+ MS+S P + AS++R++PIH+WDA TG LR ++RAY+
Sbjct: 202 MVPVLRMVEGDTIYDYCWYSLMSSSQPDTSYVASSSRENPIHIWDAFTGELRASFRAYNH 261
Query: 170 VDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIA 229
+DE+TAA S+ F+P G+++F G+N++VRVF RPGRD E +T K+GQ+GI+S IA
Sbjct: 262 LDELTAAHSLCFSPDGSQLFCGFNRTVRVFSTSRPGRDCEVRATF-AKKQGQSGIISCIA 320
Query: 230 FSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPY 289
FSP+ + A GSY +T +Y D+ L +L G +GG+TH+ F DGN ++G RKD
Sbjct: 321 FSPSQP-LYACGSYGRTLGLYAWDDGSPLALLGGHQGGITHLCFHPDGNLFFSGARKDAE 379
Query: 290 ILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKW--- 346
+LCWDLR+ +++ L R TNQRI FD++PSG+ L +G +G+V ++D+ +G +
Sbjct: 380 LLCWDLRQPGHLLWSLSREVT-TNQRIYFDLDPSGQFLVSGNTNGMVSVWDI-SGAFGDS 437
Query: 347 -----ISGFQAAADTVNGFSFHPFLPMAASSSGHRRFP 379
+ F D NG S HP LP+ A++SG R FP
Sbjct: 438 SKLGPVMTFLPQKDCTNGVSLHPSLPLLATASGQRMFP 475
|
Essential component of the telomerase holoenzyme complex, a ribonucleoprotein complex essential for the replication of chromosome termini that elongates telomeres in most eukaryotes. In the telomerase holoenzyme complex, it controls telomerase localization to Cajal body. Required for delivery of TERC to telomeres during S phase and for telomerase activity. Binds small Cajal body RNAs (scaRNAs). The mRNA encoding this protein plays a critical role in the regulation of p53 expression at the post-transcriptional level; it is involved both in maintaining basal p53 mRNA levels and in p53 induction upon DNA damage. Mesocricetus auratus (taxid: 10036) |
| >sp|Q8VC51|WAP53_MOUSE Telomerase Cajal body protein 1 OS=Mus musculus GN=Wrap53 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 286 bits (732), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 153/371 (41%), Positives = 222/371 (59%), Gaps = 21/371 (5%)
Query: 20 EVTEAAQENQQEY----TWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSF 75
E TE E + E T+ F P +++F T S NFLKG KW+PDGS
Sbjct: 111 EATEGVSEERAEVDEGDTFWTYSFSQVPRYLSGSWSEFSTRS--ENFLKGCKWAPDGSCI 168
Query: 76 LTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASD 135
LT+S D LRI++LP S D L + EG+++YD+CW+ MS++
Sbjct: 169 LTNSADNVLRIYNLPPELYSEQEQV-----DYAEMVPVLRMVEGDTIYDYCWYSLMSSTQ 223
Query: 136 PTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKS 195
P + AS++R++PIH+WDA TG LR ++RAY+ +DE+TAA S+ F+P G+++F G+N++
Sbjct: 224 PDTSYVASSSRENPIHIWDAFTGELRASFRAYNHLDELTAAHSLCFSPDGSQLFCGFNRT 283
Query: 196 VRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM 255
VRVF RPGRD E +T K+GQ+GI+S IAFSP+ + A GSY +T +Y D+
Sbjct: 284 VRVFSTSRPGRDCEVRATF-AKKQGQSGIISCIAFSPSQP-LYACGSYGRTIGLYAWDDG 341
Query: 256 ELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQR 315
L +L G +GG+TH+ F DGN ++G RKD +LCWDLR+ +++ L R TNQR
Sbjct: 342 SPLALLGGHQGGITHLCFHPDGNLFFSGARKDAELLCWDLRQPGHLLWSLSREVT-TNQR 400
Query: 316 ILFDIEPSGRHLGTGGQDGLVHIYDLQTG-------KWISGFQAAADTVNGFSFHPFLPM 368
I FD++PSG+ L +G G+V ++D+ + + F D NG S HP LP+
Sbjct: 401 IYFDLDPSGQFLVSGNTSGVVSVWDISGALSDDSKLEPVVTFLPQKDCTNGVSLHPTLPL 460
Query: 369 AASSSGHRRFP 379
A++SG R FP
Sbjct: 461 LATASGQRVFP 471
|
Essential component of the telomerase holoenzyme complex, a ribonucleoprotein complex essential for the replication of chromosome termini that elongates telomeres in most eukaryotes. In the telomerase holoenzyme complex, it controls telomerase localization to Cajal body. Required for delivery of TERC to telomeres during S phase and for telomerase activity. Binds small Cajal body RNAs (scaRNAs). The mRNA encoding this protein plays a critical role in the regulation of p53 expression at the post-transcriptional level; it is involved both in maintaining basal p53 mRNA levels and in p53 induction upon DNA damage. Mus musculus (taxid: 10090) |
| >sp|Q5XII5|WAP53_RAT Telomerase Cajal body protein 1 OS=Rattus norvegicus GN=Wrap53 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 285 bits (729), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 144/337 (42%), Positives = 214/337 (63%), Gaps = 17/337 (5%)
Query: 50 YNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDS 109
+++F T S NFLKG KW+PDGS LT+S D LRI++LP ++ + S D
Sbjct: 145 WSEFSTRS--ENFLKGCKWAPDGSCILTNSADNVLRIYNLPP-----ELYSESEQVDYAE 197
Query: 110 YEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDA 169
L + EG+++YD+CW+ MS++ P + AS++R++PIH+WDA TG LR ++RAY+
Sbjct: 198 MVPVLRMVEGDTIYDYCWYSLMSSTQPDTSYVASSSRENPIHIWDAFTGELRASFRAYNH 257
Query: 170 VDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIA 229
+DE+TAA S+ F+P G+++F G+N++VRVF RPGRD E +T K+GQ+GI+S +A
Sbjct: 258 LDELTAAHSLCFSPDGSQLFCGFNRTVRVFSTSRPGRDCEVRTTF-AKKQGQSGIISCLA 316
Query: 230 FSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPY 289
FSP + A GSY +T +Y D+ L +L G +GG+TH+ F DGN ++G RKD
Sbjct: 317 FSPAQP-LYACGSYGRTLGLYAWDDGSPLALLGGHQGGITHLCFHPDGNLFFSGARKDAE 375
Query: 290 ILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTG----- 344
+LCWDLR+ +++ L R TNQRI FD++PSG+ L +G G+V ++D+
Sbjct: 376 LLCWDLRQPGHLLWSLSREV-TTNQRIYFDLDPSGQFLVSGNTSGVVSVWDISGAFSDCK 434
Query: 345 --KWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFP 379
+ + F D NG S HP LP+ A++SG R FP
Sbjct: 435 QLEPVMTFLPQDDCTNGVSLHPTLPLLATASGQRMFP 471
|
Essential component of the telomerase holoenzyme complex, a ribonucleoprotein complex essential for the replication of chromosome termini that elongates telomeres in most eukaryotes. In the telomerase holoenzyme complex, it controls telomerase localization to Cajal body. Required for delivery of TERC to telomeres during S phase and for telomerase activity. Binds small Cajal body RNAs (scaRNAs). The mRNA encoding this protein plays a critical role in the regulation of p53 expression at the post-transcriptional level; it is involved both in maintaining basal p53 mRNA levels and in p53 induction upon DNA damage. Rattus norvegicus (taxid: 10116) |
| >sp|Q9BUR4|WAP53_HUMAN Telomerase Cajal body protein 1 OS=Homo sapiens GN=WRAP53 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 279 bits (713), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 159/397 (40%), Positives = 234/397 (58%), Gaps = 23/397 (5%)
Query: 3 EEEQQQTLQQQQIYSDTEVTEAAQENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNF 62
EE L + DT E A E++ + W F P +++F T P NF
Sbjct: 116 EEANGPELGSGKAMEDTS-GEPAAEDEGDTAW-NYSFSQLPRFLSGSWSEFSTQ--PENF 171
Query: 63 LKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESV 122
LKG KW+PDGS LT+S D LRI++LP + ++ A+ L + EG+++
Sbjct: 172 LKGCKWAPDGSCILTNSADNILRIYNLPPE-LYHEGEQVEYAE----MVPVLRMVEGDTI 226
Query: 123 YDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFN 182
YD+CW+ MS++ P + AS++R++PIH+WDA TG LR ++RAY+ +DE+TAA S+ F+
Sbjct: 227 YDYCWYSLMSSAQPDTSYVASSSRENPIHIWDAFTGELRASFRAYNHLDELTAAHSLCFS 286
Query: 183 PTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS 242
P G+++F G+N++VRVF RPGRD E +T K+GQ+GI+S IAFSP + A GS
Sbjct: 287 PDGSQLFCGFNRTVRVFSTARPGRDCEVRATF-AKKQGQSGIISCIAFSPAQP-LYACGS 344
Query: 243 YSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVV 302
Y ++ +Y D+ L +L G +GG+TH+ F DGN ++G RKD +LCWDLR++ +
Sbjct: 345 YGRSLGLYAWDDGSPLALLGGHQGGITHLCFHPDGNRFFSGARKDAELLCWDLRQSGYPL 404
Query: 303 YKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDL----QTGK--WISGFQAAADT 356
+ L R TNQRI FD++P+G+ L +G G V ++D GK + F D
Sbjct: 405 WSLGREVT-TNQRIYFDLDPTGQFLVSGSTSGAVSVWDTDGPGNDGKPEPVLSFLPQKDC 463
Query: 357 VNGFSFHPFLPMAASSSGHRRFPV-----DDFEDLHL 388
NG S HP LP+ A++SG R FP D+ E+L L
Sbjct: 464 TNGVSLHPSLPLLATASGQRVFPEPTESGDEGEELGL 500
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Essential component of the telomerase holoenzyme complex, a ribonucleoprotein complex essential for the replication of chromosome termini that elongates telomeres in most eukaryotes. In the telomerase holoenzyme complex, it controls telomerase localization to Cajal body. Required for delivery of TERC to telomeres during S phase and for telomerase activity. Binds small Cajal body RNAs (scaRNAs). The mRNA encoding this protein plays a critical role in the regulation of p53 expression at the post-transcriptional level; it is involved both in maintaining basal p53 mRNA levels and in p53 induction upon DNA damage. Homo sapiens (taxid: 9606) |
| >sp|Q3SWZ7|WAP53_BOVIN Telomerase Cajal body protein 1 OS=Bos taurus GN=WRAP53 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 278 bits (710), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 140/332 (42%), Positives = 208/332 (62%), Gaps = 24/332 (7%)
Query: 59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEAS----- 113
P NFLKG KW+PDGS LT+S D LRI++LP L + + E +
Sbjct: 159 PENFLKGCKWAPDGSCILTNSADNILRIYNLPPE----------LYNEGEQLEYAEMAPV 208
Query: 114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEI 173
L + EG+++YD+CW+ MS++ P + AS++R++PIH+WDA TG LR ++R+Y+ +DE+
Sbjct: 209 LRMVEGDTIYDYCWYSLMSSAQPDTSYVASSSRENPIHIWDAFTGELRASFRSYNHLDEL 268
Query: 174 TAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPT 233
TAA S+ F+P G+++F G+N++VRVF RPGRD E +T ++GQ+GI+S IAFSPT
Sbjct: 269 TAAHSLCFSPDGSQLFCGFNRTVRVFSTSRPGRDCEVRTTF-AKRQGQSGIISCIAFSPT 327
Query: 234 HTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCW 293
+ A GSY ++ +Y ++ L +L G +GG+TH+ F DGN ++G RKD +LCW
Sbjct: 328 QP-LYACGSYGRSLGLYTWEDGSPLALLGGHQGGITHLCFHPDGNCFFSGARKDAELLCW 386
Query: 294 DLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDL------QTGKWI 347
DLR+ ++ L R TNQRI FD++P+G+ L +G G V ++D + +
Sbjct: 387 DLRQLGHPLWSLSREVT-TNQRIYFDLDPTGQFLVSGSTSGAVSVWDTGGAGLESKPEPV 445
Query: 348 SGFQAAADTVNGFSFHPFLPMAASSSGHRRFP 379
FQ D NG S HP LP+ A++SG R FP
Sbjct: 446 LSFQPQKDCTNGVSLHPSLPLLATASGQRVFP 477
|
Essential component of the telomerase holoenzyme complex, a ribonucleoprotein complex essential for the replication of chromosome termini that elongates telomeres in most eukaryotes. In the telomerase holoenzyme complex, it controls telomerase localization to Cajal body. Required for delivery of TERC to telomeres during S phase and for telomerase activity. Binds small Cajal body RNAs (scaRNAs). The mRNA encoding this protein plays a critical role in the regulation of p53 expression at the post-transcriptional level; it is involved both in maintaining basal p53 mRNA levels and in p53 induction upon DNA damage. Bos taurus (taxid: 9913) |
| >sp|O59762|GNR1_SCHPO Guanine nucleotide-binding protein negative regulator 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gnr1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 132 bits (331), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 87/285 (30%), Positives = 132/285 (46%), Gaps = 12/285 (4%)
Query: 59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTE 118
P NF +WSPDGS+ L+ +ED+ L +++P + +S + SY+
Sbjct: 45 PLNFFHSSRWSPDGSTILSLTEDQCLNCWNVPFSDLSKKADGPLNFSKHLSYKYQ----S 100
Query: 119 GESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFS 178
E+VY + W+ M DP+S +FA ++RD PI L + TTG + +Y D + +
Sbjct: 101 PETVYSYSWYSRMKLDDPSSNLFAVSSRDQPIKLINFTTGKNKASYHMIDHQERYQGSHC 160
Query: 179 VAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKE-----GQAGIMSAIAFSPT 233
+ F G + AG + F++ ++ + G K GI S + +P
Sbjct: 161 LQFTNDGEYLIAGDKNCLHHFNIRTGCKEPVMTTVTHGYKVPLWEFSLKGIQSCFSLNPM 220
Query: 234 HTGMLAIGSYSQTSAIYREDNMELLYVLHGQE--GGVTHVQFSRDGNYLYTGGRKDPYIL 291
+ LA+G+YS IY + + E GVTH+Q+ DG LY G R I
Sbjct: 221 DSKTLAVGTYSNRVGIYNDCGRRPCQLEFSIERGNGVTHLQWCEDGEKLYVGSRCSDKIE 280
Query: 292 CWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLV 336
WD+R +VY L TNQRILFD + L GG DG +
Sbjct: 281 VWDIRYVRDMVYALEGHRGDTNQRILFDTDKKDEILA-GGTDGSI 324
|
Negatively regulates the pheromone-response pathway. Acts as a structural mimic of the G protein beta subunit thereby interacting with gpa1 which then inhibits gpa1 signaling. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 85.1 bits (209), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 76/314 (24%), Positives = 134/314 (42%), Gaps = 44/314 (14%)
Query: 61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGE 120
N++ + +SPDG++ + S D+T+R++ + + Y + + S+ S+V
Sbjct: 1159 NWVNAVAFSPDGATLASGSGDQTVRLWDISSSKCLY------ILQGHTSWVNSVVF---- 1208
Query: 121 SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVA 180
+P AS + D + LW+ + CT++ + + SV
Sbjct: 1209 --------------NPDGSTLASGSSDQTVRLWEINSSKCLCTFQGH-----TSWVNSVV 1249
Query: 181 FNPTGTKIFAGY-NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLA 239
FNP G+ + +G +K+VR++D+ S +G ++++AF+P + MLA
Sbjct: 1250 FNPDGSMLASGSSDKTVRLWDISS--------SKCLHTFQGHTNWVNSVAFNPDGS-MLA 1300
Query: 240 IGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAV 299
GS QT ++ + + L+ G V+ V FS DG L +G D + W +
Sbjct: 1301 SGSGDQTVRLWEISSSKCLHTFQGHTSWVSSVTFSPDGTMLASGS-DDQTVRLWSISSG- 1358
Query: 300 QVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNG 359
LY HTN P G L +G D V ++ + +GK + Q + V
Sbjct: 1359 ---ECLYTFLGHTNWVGSVIFSPDGAILASGSGDQTVRLWSISSGKCLYTLQGHNNWVGS 1415
Query: 360 FSFHPFLPMAASSS 373
F P + AS S
Sbjct: 1416 IVFSPDGTLLASGS 1429
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 75.5 bits (184), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 80/334 (23%), Positives = 145/334 (43%), Gaps = 40/334 (11%)
Query: 60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPE-------NGISYDVNACSLAKDQDSYEA 112
+N+++ + +SPDG + D+ ++++S+ + G ++V + + D ++ A
Sbjct: 684 SNWVRFVVFSPDGEILASCGADENVKLWSVRDGVCIKTLTGHEHEVFSVAFHPDGETL-A 742
Query: 113 SLVVTEGESVYDF----CWFPHMSASDPTSCV--------FASTTRDHPIHLWDATTGLL 160
S + ++D C +D CV AS+ DH I LWD + G
Sbjct: 743 SASGDKTIKLWDIQDGTCLQTLTGHTDWVRCVAFSPDGNTLASSAADHTIKLWDVSQGKC 802
Query: 161 RCTYRAYDAVDEITAAFSVAFNPTGTKIFAGY-NKSVRVFDVHRPGRDFEKYSTLKGNKE 219
T +++ SVAF+ G + +G ++++++++ H G + Y
Sbjct: 803 LRTLKSHTG-----WVRSVAFSADGQTLASGSGDRTIKIWNYH-TGECLKTYI------- 849
Query: 220 GQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNY 279
G + +IA+SP + +L GS +T ++ + LHG V V FS DG
Sbjct: 850 GHTNSVYSIAYSP-DSKILVSGSGDRTIKLWDCQTHICIKTLHGHTNEVCSVAFSPDGQT 908
Query: 280 LYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIY 339
L D + W+ R Q + Y +T+ + P + L +G D V ++
Sbjct: 909 LACVSL-DQSVRLWNCRTG-QCLKAWY---GNTDWALPVAFSPDRQILASGSNDKTVKLW 963
Query: 340 DLQTGKWISGFQAAADTVNGFSFHPFLPMAASSS 373
D QTGK+IS + D + G +F P AS+S
Sbjct: 964 DWQTGKYISSLEGHTDFIYGIAFSPDSQTLASAS 997
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all2124 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 73.2 bits (178), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 85/370 (22%), Positives = 152/370 (41%), Gaps = 59/370 (15%)
Query: 61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPE----------NGISYDVNACSLAK----- 105
+++ + +SPDG + ++S DKT++++ + + N +DVN S K
Sbjct: 1240 DWVNSLSFSPDGKTLASASADKTIKLWRIADGKLVKTLKGHNDSVWDVNFSSDGKAIASA 1299
Query: 106 ---------DQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDAT 156
++ E VY + P S + AS + D+ I LW
Sbjct: 1300 SRDNTIKLWNRHGIELETFTGHSGGVYAVNFLPD-------SNIIASASLDNTIRLWQ-- 1350
Query: 157 TGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLK 215
R + + + ++V+F G+ I AG + +++++ +D TL
Sbjct: 1351 ----RPLISPLEVLAGNSGVYAVSFLHDGSIIATAGADGNIQLWH----SQDGSLLKTLP 1402
Query: 216 GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSR 275
GNK + I+F+P ++A + +T I+R + + L L G + V V FS
Sbjct: 1403 GNKA-----IYGISFTP-QGDLIASANADKTVKIWRVRDGKALKTLIGHDNEVNKVNFSP 1456
Query: 276 DGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSE-HTNQRILFDIEPSGRHLGTGGQDG 334
DG L + R D + W++ K ++ + HT++ P G+ + + D
Sbjct: 1457 DGKTLASASR-DNTVKLWNVSDG-----KFKKTLKGHTDEVFWVSFSPDGKIIASASADK 1510
Query: 335 LVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFEDLHL----SG 390
+ ++D +G I A D V +F+P M AS+S + + D HL SG
Sbjct: 1511 TIRLWDSFSGNLIKSLPAHNDLVYSVNFNPDGSMLASTSADKTVKLWRSHDGHLLHTFSG 1570
Query: 391 DENCVSVWSF 400
N V SF
Sbjct: 1571 HSNVVYSSSF 1580
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q54KL5|WDR5_DICDI WD repeat-containing protein 5 homolog OS=Dictyostelium discoideum GN=wdr5 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 72.4 bits (176), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 79/318 (24%), Positives = 143/318 (44%), Gaps = 51/318 (16%)
Query: 63 LKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEG--E 120
+ +K+SPDG ++S DKT++I+ +YD +E +L EG E
Sbjct: 49 ISSVKFSPDGKWLASASADKTIKIWG------AYD----------GKFERTL---EGHKE 89
Query: 121 SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVA 180
+ D W S + S + D I +WD +G + T + + F V+
Sbjct: 90 GISDIAW-------SQDSKLICSASDDKTIKIWDVESGKMVKTLKGHKEY-----VFGVS 137
Query: 181 FNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLA 239
FNP I +G ++++VR++DV+ G + S + ++ + F+ T ++
Sbjct: 138 FNPQSNLIVSGSFDENVRIWDVN-TGECTKMIS-------AHSDPVTGVHFNRDGT-LVV 188
Query: 240 IGSYSQTSAIYREDNMELLYVLHGQEGG-VTHVQFSRDGNYLYTGGRKDPYILCWDLRKA 298
GSY T I+ +LL + ++G V+ V+FS +G ++ G D + W
Sbjct: 189 SGSYDGTVRIWDTTTGQLLNTISTEDGKEVSFVKFSPNGKFVL-AGTLDNTLRLWSYNNN 247
Query: 299 VQVVYKLYRSSEHTNQR-ILFDI--EPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAAD 355
+ + K Y + H N++ +F G+ + TG +D L++IY+LQT + + D
Sbjct: 248 KKCL-KTY--TGHKNEKYCIFSTFSVTCGKWIVTGSEDNLIYIYNLQTREIVQTLAGHED 304
Query: 356 TVNGFSFHPFLPMAASSS 373
V + HP + AS +
Sbjct: 305 VVLTVACHPTENIIASGA 322
|
Dictyostelium discoideum (taxid: 44689) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 430 | ||||||
| 255569287 | 422 | WD-repeat protein, putative [Ricinus com | 0.976 | 0.995 | 0.743 | 0.0 | |
| 224114069 | 374 | predicted protein [Populus trichocarpa] | 0.860 | 0.989 | 0.804 | 0.0 | |
| 359495466 | 407 | PREDICTED: telomerase Cajal body protein | 0.886 | 0.936 | 0.775 | 0.0 | |
| 449457694 | 417 | PREDICTED: telomerase Cajal body protein | 0.944 | 0.973 | 0.718 | 0.0 | |
| 449488413 | 417 | PREDICTED: telomerase Cajal body protein | 0.944 | 0.973 | 0.716 | 0.0 | |
| 357475895 | 427 | Telomerase Cajal body protein [Medicago | 0.948 | 0.955 | 0.691 | 1e-172 | |
| 30685465 | 425 | transducin/WD40 domain-containing protei | 0.869 | 0.88 | 0.728 | 1e-171 | |
| 297799914 | 426 | transducin family protein [Arabidopsis l | 0.869 | 0.877 | 0.719 | 1e-168 | |
| 356521301 | 447 | PREDICTED: telomerase Cajal body protein | 0.923 | 0.888 | 0.688 | 1e-164 | |
| 147846785 | 857 | hypothetical protein VITISV_023070 [Viti | 0.865 | 0.434 | 0.691 | 1e-164 |
| >gi|255569287|ref|XP_002525611.1| WD-repeat protein, putative [Ricinus communis] gi|223535047|gb|EEF36729.1| WD-repeat protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 680 bits (1754), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/432 (74%), Positives = 370/432 (85%), Gaps = 12/432 (2%)
Query: 1 MGEEEQQQTLQQQQIYSDTEVTEAAQENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPN 60
MGEE Q I E TE+ + Q+ +WP+IRFD+PP RT+HFY QFR+S IPN
Sbjct: 1 MGEE-------QPSIEVAAETTESVE---QDNSWPVIRFDLPPQRTHHFYKQFRSSPIPN 50
Query: 61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGE 120
NFLKGIKWSPDGS FLTSSEDKTLR+FSLP+ S D ACSL DQDSY++S+VV EGE
Sbjct: 51 NFLKGIKWSPDGSCFLTSSEDKTLRVFSLPDYCSSDDSIACSLDTDQDSYDSSIVVKEGE 110
Query: 121 SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVA 180
SVYDFCW+P+M+ASDP SCVFASTTRDHPIHLWDA++GLLRCTYRAYDAVDEITAAFS++
Sbjct: 111 SVYDFCWYPYMTASDPVSCVFASTTRDHPIHLWDASSGLLRCTYRAYDAVDEITAAFSIS 170
Query: 181 FNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAI 240
FNP G K+FAGYNKS+RVFD+HRPGR FE++STL+GNKEGQ GI+S+IAF PTH+GMLA
Sbjct: 171 FNPAGNKMFAGYNKSIRVFDIHRPGRVFEQHSTLQGNKEGQTGIISSIAFCPTHSGMLAT 230
Query: 241 GSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQ 300
GSYS T+AI+REDNMELLYVLHGQEGG+TH+QFSRDGNYLYTGGRKDPYILCWD+RK +
Sbjct: 231 GSYSHTTAIFREDNMELLYVLHGQEGGITHIQFSRDGNYLYTGGRKDPYILCWDMRKTAE 290
Query: 301 VVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGF 360
VVYKLYRS+E TNQRILFD+EP GR+L TGGQDGLVH+YDLQ+G+WISGFQAAADTVNGF
Sbjct: 291 VVYKLYRSTEQTNQRILFDVEPYGRYLATGGQDGLVHVYDLQSGQWISGFQAAADTVNGF 350
Query: 361 SFHPFLPMAASSSGHRRF--PVDDFEDLHLSGDENCVSVWSFLYASMMENADGINGCEFN 418
SFHP LPMAASSSGHRRF P D EDL L GDENC +VWSF YAS +EN I+G EFN
Sbjct: 351 SFHPILPMAASSSGHRRFQVPDDGPEDLCLHGDENCATVWSFSYASAVENGANIHGGEFN 410
Query: 419 CQSEHENLNQDS 430
QSE++ ++QD+
Sbjct: 411 SQSENDMIHQDT 422
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224114069|ref|XP_002316658.1| predicted protein [Populus trichocarpa] gi|222859723|gb|EEE97270.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 652 bits (1681), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 301/374 (80%), Positives = 338/374 (90%), Gaps = 4/374 (1%)
Query: 29 QQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFS 88
QQ+YTWP+IR+++PP RT+HF+ QFRTS PNNFLKGIKWSPDGS FLTSSED TL FS
Sbjct: 2 QQDYTWPVIRYNLPPQRTHHFFKQFRTS--PNNFLKGIKWSPDGSCFLTSSEDNTLHSFS 59
Query: 89 LPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDH 148
LP+NG D + C LA D+DSY+ASL+V EGESVYD+CW+P+M+ASDP SCVFA+TTRDH
Sbjct: 60 LPDNGSGSDADGCCLAIDEDSYDASLIVKEGESVYDYCWYPYMTASDPVSCVFATTTRDH 119
Query: 149 PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDF 208
PIHLWDAT+GLLRCTYRAYDAVDEITAA S+AFNP GTKIFAGYNKS+RVFD+HRPGRDF
Sbjct: 120 PIHLWDATSGLLRCTYRAYDAVDEITAAISIAFNPAGTKIFAGYNKSIRVFDIHRPGRDF 179
Query: 209 EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGV 268
+YST++GNKEGQ GI+SA+AFSPTHTGMLA GSYSQT+AIYREDNMELLYVLHGQEGG+
Sbjct: 180 AQYSTIQGNKEGQTGIISAVAFSPTHTGMLATGSYSQTTAIYREDNMELLYVLHGQEGGI 239
Query: 269 THVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLG 328
THVQFS+DGNYLYTGGRKDPYILCWD+RKAV+VVYKLYRSSE+TNQRI FDIEP GRHL
Sbjct: 240 THVQFSKDGNYLYTGGRKDPYILCWDIRKAVEVVYKLYRSSEYTNQRIFFDIEPLGRHLA 299
Query: 329 TGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDF--EDL 386
TGGQDGLVHIYDLQ G+WISGFQAA DTVNGF+FHPFLPMA SSSGHRRF V D E+L
Sbjct: 300 TGGQDGLVHIYDLQNGQWISGFQAATDTVNGFAFHPFLPMAVSSSGHRRFKVPDGCDENL 359
Query: 387 HLSGDENCVSVWSF 400
L+G ENC SVW+F
Sbjct: 360 PLTGYENCASVWNF 373
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359495466|ref|XP_002277046.2| PREDICTED: telomerase Cajal body protein 1-like [Vitis vinifera] gi|302144185|emb|CBI23312.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 644 bits (1662), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 301/388 (77%), Positives = 342/388 (88%), Gaps = 7/388 (1%)
Query: 20 EVTEAAQENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSS 79
E+ A++ ++EY+WP+IRFDVPPHR YHF +QFRT S PNNFLKG+KWSPDGS FLTSS
Sbjct: 23 EIGNEAKQVEEEYSWPVIRFDVPPHRAYHFCHQFRTPSNPNNFLKGVKWSPDGSCFLTSS 82
Query: 80 EDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC 139
ED TLR+FSLPENG + +AC D+DSY AS+VV+EGES++D CW+P+MSASDP +C
Sbjct: 83 EDNTLRLFSLPENGSDHHESAC----DEDSYAASIVVSEGESIHDHCWYPYMSASDPVTC 138
Query: 140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVF 199
VFASTTRDHPIHLWDA +G LRCTYRAYDAVDEIT AFS+AFNP GTKIFAGYNK +RVF
Sbjct: 139 VFASTTRDHPIHLWDAASGELRCTYRAYDAVDEITTAFSIAFNPAGTKIFAGYNKCLRVF 198
Query: 200 DVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLY 259
DVHRPGRDFE+YST+KGNKEGQ+GI++AIAF PTHTGMLA GSYS+T+AIYREDNMELLY
Sbjct: 199 DVHRPGRDFEQYSTIKGNKEGQSGIIAAIAFCPTHTGMLATGSYSRTTAIYREDNMELLY 258
Query: 260 VLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFD 319
+LHGQEGGVT+VQFS+DGN+LYTGGRKDPYILCWD+R V VYKLYRS+E TNQRI FD
Sbjct: 259 ILHGQEGGVTNVQFSKDGNFLYTGGRKDPYILCWDIRNTVNTVYKLYRSTETTNQRIFFD 318
Query: 320 IEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFP 379
IEP GRHLGTGGQDGLVHIYDLQTG+WIS FQAA+DT+NGFSFHPFLPMAASSSGHRRF
Sbjct: 319 IEPGGRHLGTGGQDGLVHIYDLQTGQWISCFQAASDTINGFSFHPFLPMAASSSGHRRFG 378
Query: 380 V-DDFEDLHL--SGDENCVSVWSFLYAS 404
+ + EDL L SGDENC SVWSF Y S
Sbjct: 379 IPESNEDLSLGISGDENCASVWSFSYLS 406
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449457694|ref|XP_004146583.1| PREDICTED: telomerase Cajal body protein 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 640 bits (1652), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 299/416 (71%), Positives = 355/416 (85%), Gaps = 10/416 (2%)
Query: 1 MGEEEQQQTLQQQQIYSDTEVTEAAQENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPN 60
M EE++ ++ + ++T + ++QQ Y+WP+I+F+ PP RTYHFYNQFRTS PN
Sbjct: 9 MEEEDENRSNPTGEATAETTM----NDDQQSYSWPVIQFNSPPRRTYHFYNQFRTSPNPN 64
Query: 61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGE 120
NF KG+KWSPDGS FLTSSED +LRIF+LP+ G VN +A ++DS+ ++LVV EGE
Sbjct: 65 NFFKGVKWSPDGSCFLTSSEDNSLRIFNLPDYGDDVSVN---VAAEEDSFTSNLVVGEGE 121
Query: 121 SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVA 180
SVYDFCW+P+MSASDP +CVFASTTRDHPIHLWDA +G LRCTYRAYDA+DEITAAFS+A
Sbjct: 122 SVYDFCWYPYMSASDPVTCVFASTTRDHPIHLWDAASGELRCTYRAYDAMDEITAAFSIA 181
Query: 181 FNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAI 240
FNP GTKIFAGYNK VR+FD+HRPGRDF ++STL+GNKEGQ GI+SAIAFSPTH+GMLA+
Sbjct: 182 FNPAGTKIFAGYNKLVRIFDLHRPGRDFGQHSTLQGNKEGQTGIISAIAFSPTHSGMLAL 241
Query: 241 GSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQ 300
GSYSQT+ IYREDNMELLYVLHGQEGG+TH+QFS+DGNYLYTGGRKDPYILCWD+RK+V
Sbjct: 242 GSYSQTTGIYREDNMELLYVLHGQEGGITHIQFSKDGNYLYTGGRKDPYILCWDIRKSVD 301
Query: 301 VVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGF 360
VVYKLYRSSE+TNQRI FDIEP G+HLGTGGQDG VH+YDLQTG+W++ FQAA DTVNGF
Sbjct: 302 VVYKLYRSSENTNQRIFFDIEPCGQHLGTGGQDGFVHVYDLQTGQWVTSFQAAQDTVNGF 361
Query: 361 SFHPFLPMAASSSGHRRF--PVDDFEDLHLSGDENCVSVWSFLYASMMENADGING 414
SFHP++PM +SSGHRRF P +D EDL LSGDENC S+WSF AS + N D ING
Sbjct: 362 SFHPYMPMTVTSSGHRRFIGPDNDDEDLCLSGDENCASLWSFDCAS-LGNGDAING 416
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449488413|ref|XP_004158026.1| PREDICTED: telomerase Cajal body protein 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 639 bits (1649), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 298/416 (71%), Positives = 355/416 (85%), Gaps = 10/416 (2%)
Query: 1 MGEEEQQQTLQQQQIYSDTEVTEAAQENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPN 60
M EE++ ++ + ++T + ++QQ Y+WP+I+F+ PP RTYHFYNQFRTS PN
Sbjct: 9 MEEEDENRSNPTGEATAETTM----NDDQQSYSWPVIQFNSPPRRTYHFYNQFRTSPNPN 64
Query: 61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGE 120
NF KG+KWSPDGS FLTSSED +LRIF+LP+ G VN +A ++DS+ ++LVV EGE
Sbjct: 65 NFFKGVKWSPDGSCFLTSSEDNSLRIFNLPDYGDDVSVN---VAAEEDSFTSNLVVGEGE 121
Query: 121 SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVA 180
SVYDFCW+P+MSASDP +CVFASTTRDHPIHLWDA +G LRCTYRAYDA+DEITAAFS+A
Sbjct: 122 SVYDFCWYPYMSASDPVTCVFASTTRDHPIHLWDAASGELRCTYRAYDAMDEITAAFSIA 181
Query: 181 FNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAI 240
FNP GTKIF+GYNK VR+FD+HRPGRDF ++STL+GNKEGQ GI+SAIAFSPTH+GMLA+
Sbjct: 182 FNPAGTKIFSGYNKLVRIFDLHRPGRDFGQHSTLQGNKEGQTGIISAIAFSPTHSGMLAL 241
Query: 241 GSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQ 300
GSYSQT+ IYREDNMELLYVLHGQEGG+TH+QFS+DGNYLYTGGRKDPYILCWD+RK+V
Sbjct: 242 GSYSQTTGIYREDNMELLYVLHGQEGGITHIQFSKDGNYLYTGGRKDPYILCWDIRKSVD 301
Query: 301 VVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGF 360
VVYKLYRSSE+TNQRI FDIEP G+HLGTGGQDG VH+YDLQTG+W++ FQAA DTVNGF
Sbjct: 302 VVYKLYRSSENTNQRIFFDIEPCGQHLGTGGQDGFVHVYDLQTGQWVTSFQAAQDTVNGF 361
Query: 361 SFHPFLPMAASSSGHRRF--PVDDFEDLHLSGDENCVSVWSFLYASMMENADGING 414
SFHP++PM +SSGHRRF P +D EDL LSGDENC S+WSF AS + N D ING
Sbjct: 362 SFHPYMPMTVTSSGHRRFIGPDNDDEDLCLSGDENCASLWSFDCAS-LGNGDAING 416
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357475895|ref|XP_003608233.1| Telomerase Cajal body protein [Medicago truncatula] gi|355509288|gb|AES90430.1| Telomerase Cajal body protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 610 bits (1574), Expect = e-172, Method: Compositional matrix adjust.
Identities = 300/434 (69%), Positives = 350/434 (80%), Gaps = 26/434 (5%)
Query: 1 MGEEEQQQTLQQQQIYSDTEVTEAAQENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPN 60
MGEE ++ Q E+ +EY+WP++RFDV PHRTYHF+ QF + + PN
Sbjct: 1 MGEEAEEVIELQPDASIPNEI--------EEYSWPVLRFDVSPHRTYHFHQQFTSPTNPN 52
Query: 61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGE 120
NFLK +KWSPDGSSFLTSS+D TLR+F+LP G D+ + QDSY ASLV++EGE
Sbjct: 53 NFLKAVKWSPDGSSFLTSSDDNTLRLFTLP--GADSDI-PLDTSDYQDSYAASLVMSEGE 109
Query: 121 SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVA 180
S++DFCW+P+MSASDP + VFA+TTRDHPIHLWDAT+G LRCTYRAYDA+DEITAAFSVA
Sbjct: 110 SIHDFCWYPYMSASDPVTNVFATTTRDHPIHLWDATSGQLRCTYRAYDAMDEITAAFSVA 169
Query: 181 FNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAI 240
FNP+GTKIFAGYNK +R+FD+HRPGRDF+ +ST+K KEGQ GI+SA+AFSP+HTGMLA+
Sbjct: 170 FNPSGTKIFAGYNKCIRMFDLHRPGRDFKLHSTVKDKKEGQTGIISALAFSPSHTGMLAL 229
Query: 241 GSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQ 300
GSYSQT+AIY EDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWD+RKAV
Sbjct: 230 GSYSQTTAIYTEDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDVRKAVD 289
Query: 301 VVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAA------ 354
VYKLYRS+E+TNQRILFDI+PSG+HLGTGGQDG VHIYDLQTG+W+S F+AA
Sbjct: 290 CVYKLYRSAENTNQRILFDIDPSGQHLGTGGQDGSVHIYDLQTGQWVSSFEAAQVIHASN 349
Query: 355 -----DTVNGFSFHPFLPMAASSSGHRRF--PVDDFEDLHLSGDENCVSVWSFLYASMME 407
DTVN FSFHPFLP A SSSGHRRF P ++ EDL LSG ENCVSVWSF Y S ME
Sbjct: 350 SGQPYDTVNSFSFHPFLPHAVSSSGHRRFVIPDENDEDLCLSGRENCVSVWSFCYDSKME 409
Query: 408 NADGINGCEFNCQS 421
+ G + FN QS
Sbjct: 410 DFKGDD--SFNNQS 421
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30685465|ref|NP_193883.2| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|23296375|gb|AAN13056.1| unknown protein [Arabidopsis thaliana] gi|332659062|gb|AEE84462.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 607 bits (1566), Expect = e-171, Method: Compositional matrix adjust.
Identities = 279/383 (72%), Positives = 330/383 (86%), Gaps = 9/383 (2%)
Query: 25 AQENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTL 84
+ +Q+ +WP +RFDV P+RT+HF QFRT+ PNNFLKG+KWSPDGS FL SSED TL
Sbjct: 16 VESGEQKSSWPTMRFDVSPYRTHHFSKQFRTARNPNNFLKGLKWSPDGSCFLASSEDNTL 75
Query: 85 RIFSLPENGISYDVNACSL-AKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFAS 143
+F LP++G D N + ++DSY ASL+V EGESVYDFCW+P+MS SDP +CVFA+
Sbjct: 76 SLFHLPQDGG--DSNGYGVPVPEEDSYGASLLVNEGESVYDFCWYPYMSVSDPLTCVFAT 133
Query: 144 TTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHR 203
+TRDHPIHLWD+T+G LRCTYRAYDA+DEITAAFSV FNP GTKIFAGYN S+RVFD+HR
Sbjct: 134 STRDHPIHLWDSTSGELRCTYRAYDAMDEITAAFSVGFNPDGTKIFAGYNSSIRVFDLHR 193
Query: 204 PGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG 263
PGRDF +YSTL+ NKEGQAGI+S +AFSPT++GMLA+GSY QT+ IYREDNMELLYVLHG
Sbjct: 194 PGRDFRQYSTLQKNKEGQAGILSTLAFSPTNSGMLAVGSYGQTTGIYREDNMELLYVLHG 253
Query: 264 QEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPS 323
QEGGVTHVQFS+DGNYLYTGGRKDPYILCWD+RK+V++VYKLYR++E+TNQR+ FDIEP
Sbjct: 254 QEGGVTHVQFSKDGNYLYTGGRKDPYILCWDIRKSVEIVYKLYRATENTNQRVFFDIEPC 313
Query: 324 GRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPV--- 380
GRHLGTGGQDGLVH+YDLQTG W+SG+QAA+DTVN FSFHP+LPMAA+SSGHRRF +
Sbjct: 314 GRHLGTGGQDGLVHMYDLQTGNWVSGYQAASDTVNAFSFHPYLPMAATSSGHRRFAIPDD 373
Query: 381 DDFED---LHLSGDENCVSVWSF 400
DD ED L L DENCVS+WSF
Sbjct: 374 DDGEDKNELQLKADENCVSLWSF 396
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297799914|ref|XP_002867841.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] gi|297313677|gb|EFH44100.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 597 bits (1538), Expect = e-168, Method: Compositional matrix adjust.
Identities = 275/382 (71%), Positives = 326/382 (85%), Gaps = 8/382 (2%)
Query: 25 AQENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTL 84
+ +Q +WP +RFDV P+RT+HF QFRT+ PNNFLKG+KWSPDGS FL SSED TL
Sbjct: 16 VESGEQNSSWPTMRFDVSPYRTHHFSKQFRTARNPNNFLKGLKWSPDGSCFLASSEDNTL 75
Query: 85 RIFSLPENGISYDVNACSL-AKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFAS 143
+F LP++G D N + ++DSY ASL+V EGESVYDFCW+P+MS SDP +CVFA+
Sbjct: 76 SLFHLPQDGG--DSNGYGVPVPEEDSYGASLLVNEGESVYDFCWYPYMSVSDPLTCVFAT 133
Query: 144 TTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHR 203
+TRDHPIHLWD+T+G LRCTYRAYDA+DEITAAFSV FNP GTKIFAGYN +RVFD+HR
Sbjct: 134 STRDHPIHLWDSTSGELRCTYRAYDAMDEITAAFSVGFNPDGTKIFAGYNSFIRVFDLHR 193
Query: 204 PGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG 263
PGRDF +YSTL+ NKEGQAGI+S +AFSPT++GMLA+GSY QT+ IYREDNMELLYVLHG
Sbjct: 194 PGRDFGQYSTLQKNKEGQAGILSTLAFSPTNSGMLAVGSYGQTTGIYREDNMELLYVLHG 253
Query: 264 QEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPS 323
QEGGVTHVQFS+DGNYLYTGGRKDPYILCWD+RK+V++VYKLYR++E+TNQR+ FDIEP
Sbjct: 254 QEGGVTHVQFSKDGNYLYTGGRKDPYILCWDIRKSVEIVYKLYRATENTNQRVFFDIEPC 313
Query: 324 GRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPV--- 380
GRHL TGGQDGLVH+YDLQTG W+SG+QAA+DTVN FSFHP+LPMAA+SSGHRRF +
Sbjct: 314 GRHLATGGQDGLVHMYDLQTGNWVSGYQAASDTVNAFSFHPYLPMAATSSGHRRFAIPDD 373
Query: 381 --DDFEDLHLSGDENCVSVWSF 400
+D DL L DENCVS+WSF
Sbjct: 374 DDEDKNDLQLKADENCVSLWSF 395
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356521301|ref|XP_003529295.1| PREDICTED: telomerase Cajal body protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 584 bits (1506), Expect = e-164, Method: Compositional matrix adjust.
Identities = 281/408 (68%), Positives = 332/408 (81%), Gaps = 11/408 (2%)
Query: 30 QEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSL 89
+EY++P++RFDV PHRTYHF+ QF T S PNNF K +KWSPDGS FLTSS+D TLR+F+
Sbjct: 41 EEYSFPVLRFDVSPHRTYHFHRQFITPSNPNNFFKAVKWSPDGSCFLTSSDDNTLRLFAP 100
Query: 90 PENGISYDVNACSLAKDQ--------DSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF 141
P V A DS+ A++V+ EGES++DFCW+P+MS+SD + VF
Sbjct: 101 PGTESDAPVAASGHGDGNHESSLFVADSFAANVVMHEGESIHDFCWYPYMSSSDLVTNVF 160
Query: 142 ASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDV 201
A+TTRDHPIHLWDAT+G LRCTYRAYDA+DEITAAFS+AFNP GTKIFAGYNK +R+FD+
Sbjct: 161 ATTTRDHPIHLWDATSGQLRCTYRAYDAMDEITAAFSIAFNPAGTKIFAGYNKCIRLFDL 220
Query: 202 HRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVL 261
HRPGRDFE YST+K KEGQ GI+SA+AFSP +GMLA+GSY+QT+AIYREDNMELLY L
Sbjct: 221 HRPGRDFELYSTVKDKKEGQTGIISAMAFSPFPSGMLALGSYNQTTAIYREDNMELLYFL 280
Query: 262 HGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIE 321
HGQEGG+THVQFSRDGNYLYTGGRKDPYILCWD+RK+V VYKLYRSSE+TNQRILFDI+
Sbjct: 281 HGQEGGITHVQFSRDGNYLYTGGRKDPYILCWDVRKSVDCVYKLYRSSENTNQRILFDID 340
Query: 322 PSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRF--P 379
PSG++LGTGGQDGLVHIY+LQTG+W+S F+AA DTVNGFSFHPFLP A SSSGHRRF P
Sbjct: 341 PSGKYLGTGGQDGLVHIYNLQTGQWVSSFEAALDTVNGFSFHPFLPHAVSSSGHRRFVIP 400
Query: 380 VDDFEDLHLSGDENCVSVWSFLYASMMENADGINGCEFNCQSEHENLN 427
D E+ L+G ENC+S+W+F SMME D N FN QSE L+
Sbjct: 401 DDGNEEFCLTGRENCLSMWTFCCDSMME-TDLKNDGSFNNQSESRCLD 447
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147846785|emb|CAN78502.1| hypothetical protein VITISV_023070 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 583 bits (1502), Expect = e-164, Method: Compositional matrix adjust.
Identities = 280/405 (69%), Positives = 323/405 (79%), Gaps = 33/405 (8%)
Query: 2 GEEEQQQTLQQQQIYSDTEVTEAAQENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNN 61
GEEEQ + + E+ A++ ++EY+WP+IRFDVPPHR YHF +QFRT S PNN
Sbjct: 4 GEEEQPNLGDEAE-----EIGNEAKQVEEEYSWPVIRFDVPPHRAYHFCHQFRTPSNPNN 58
Query: 62 FLKGIKWSPDGSSFLTSSEDKTLRI-----------------FSLPENGISYDVNACSLA 104
FLKG+KW F + LRI S PENG + +AC
Sbjct: 59 FLKGVKWRNVKIGF------RNLRITVAIXCSGKLGMNRNNMMSRPENGSDHXESAC--- 109
Query: 105 KDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTY 164
D+DSY AS+VV+EGES++D CW+P+MSASDP +CVFASTTRDHPIHLWDA +G LRCTY
Sbjct: 110 -DEDSYAASIVVSEGESIHDHCWYPYMSASDPVTCVFASTTRDHPIHLWDAASGELRCTY 168
Query: 165 RAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGI 224
RAYDAVDEIT AFS+AFNP GTKIFAGYNK +RVFDVHRPGRDFE+YST+KGNKEGQ+GI
Sbjct: 169 RAYDAVDEITTAFSIAFNPAGTKIFAGYNKCLRVFDVHRPGRDFEQYSTIKGNKEGQSGI 228
Query: 225 MSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGG 284
++AIAF PTHTGMLA GSYS+T+AIYREDNMELLY+LHGQEGGVT+VQFS+DGN+LYTGG
Sbjct: 229 IAAIAFCPTHTGMLATGSYSRTTAIYREDNMELLYILHGQEGGVTNVQFSKDGNFLYTGG 288
Query: 285 RKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTG 344
RKDPYILCWD+R V VYKLYRS+E TNQRI FDIEP GRHLGTGGQDGLVHIYDLQTG
Sbjct: 289 RKDPYILCWDIRNTVNTVYKLYRSTETTNQRIFFDIEPGGRHLGTGGQDGLVHIYDLQTG 348
Query: 345 KWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPV-DDFEDLHL 388
+WIS FQAA+DT+NGFSFHPFLPMAASSSGHRRF + + EDL L
Sbjct: 349 QWISCFQAASDTINGFSFHPFLPMAASSSGHRRFGIPESNEDLSL 393
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 430 | ||||||
| TAIR|locus:2119617 | 425 | AT4G21520 "AT4G21520" [Arabido | 0.923 | 0.934 | 0.694 | 1.2e-159 | |
| UNIPROTKB|Q60525 | 538 | Wrap53 "Telomerase Cajal body | 0.762 | 0.609 | 0.434 | 1.6e-72 | |
| MGI|MGI:2384933 | 532 | Wrap53 "WD repeat containing, | 0.832 | 0.672 | 0.411 | 1.8e-71 | |
| RGD|1359624 | 532 | Wrap53 "WD repeat containing, | 0.820 | 0.663 | 0.410 | 2.9e-71 | |
| UNIPROTKB|F1ST42 | 539 | WRAP53 "Uncharacterized protei | 0.823 | 0.656 | 0.417 | 9.9e-71 | |
| UNIPROTKB|Q9BUR4 | 548 | WRAP53 "Telomerase Cajal body | 0.823 | 0.645 | 0.412 | 1.3e-70 | |
| UNIPROTKB|F1MJW9 | 540 | WRAP53 "Telomerase Cajal body | 0.834 | 0.664 | 0.407 | 4.3e-70 | |
| UNIPROTKB|Q3SWZ7 | 540 | WRAP53 "Telomerase Cajal body | 0.834 | 0.664 | 0.407 | 4.3e-70 | |
| FB|FBgn0031782 | 543 | WDR79 "WD repeat domain 79 hom | 0.727 | 0.576 | 0.336 | 1.2e-47 | |
| POMBASE|SPCC1020.09 | 399 | gnr1 "heterotrimeric G protein | 0.683 | 0.736 | 0.296 | 2.3e-30 |
| TAIR|locus:2119617 AT4G21520 "AT4G21520" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1555 (552.4 bits), Expect = 1.2e-159, P = 1.2e-159
Identities = 286/412 (69%), Positives = 343/412 (83%)
Query: 26 QENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLR 85
+ +Q+ +WP +RFDV P+RT+HF QFRT+ PNNFLKG+KWSPDGS FL SSED TL
Sbjct: 17 ESGEQKSSWPTMRFDVSPYRTHHFSKQFRTARNPNNFLKGLKWSPDGSCFLASSEDNTLS 76
Query: 86 IFSLPENGISYDVNACSL-AKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFAST 144
+F LP++G D N + ++DSY ASL+V EGESVYDFCW+P+MS SDP +CVFA++
Sbjct: 77 LFHLPQDG--GDSNGYGVPVPEEDSYGASLLVNEGESVYDFCWYPYMSVSDPLTCVFATS 134
Query: 145 TRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRP 204
TRDHPIHLWD+T+G LRCTYRAYDA+DEITAAFSV FNP GTKIFAGYN S+RVFD+HRP
Sbjct: 135 TRDHPIHLWDSTSGELRCTYRAYDAMDEITAAFSVGFNPDGTKIFAGYNSSIRVFDLHRP 194
Query: 205 GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ 264
GRDF +YSTL+ NKEGQAGI+S +AFSPT++GMLA+GSY QT+ IYREDNMELLYVLHGQ
Sbjct: 195 GRDFRQYSTLQKNKEGQAGILSTLAFSPTNSGMLAVGSYGQTTGIYREDNMELLYVLHGQ 254
Query: 265 EGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSG 324
EGGVTHVQFS+DGNYLYTGGRKDPYILCWD+RK+V++VYKLYR++E+TNQR+ FDIEP G
Sbjct: 255 EGGVTHVQFSKDGNYLYTGGRKDPYILCWDIRKSVEIVYKLYRATENTNQRVFFDIEPCG 314
Query: 325 RHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPV---D 381
RHLGTGGQDGLVH+YDLQTG W+SG+QAA+DTVN FSFHP+LPMAA+SSGHRRF + D
Sbjct: 315 RHLGTGGQDGLVHMYDLQTGNWVSGYQAASDTVNAFSFHPYLPMAATSSGHRRFAIPDDD 374
Query: 382 DFED---LHLSGDENCVSVWSFLYASMMENA-DGINGCEFNCQSEHENLNQD 429
D ED L L DENCVS+WSF Y +N D NG +S +N+ ++
Sbjct: 375 DGEDKNELQLKADENCVSLWSF-YVE--DNTYDENNGVA--SESHLQNVTEE 421
|
|
| UNIPROTKB|Q60525 Wrap53 "Telomerase Cajal body protein 1" [Mesocricetus auratus (taxid:10036)] | Back alignment and assigned GO terms |
|---|
Score = 733 (263.1 bits), Expect = 1.6e-72, P = 1.6e-72
Identities = 152/350 (43%), Positives = 224/350 (64%)
Query: 50 YNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDS 109
+++FR S NFLKG KW+PDGS LT+S D TLRI++LP ++ + + D
Sbjct: 149 WSEFRAHS--ENFLKGCKWAPDGSCILTNSADNTLRIYNLPP-----ELYSATEQVDYAE 201
Query: 110 YEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDA 169
L + EG+++YD+CW+ MS+S P + AS++R++PIH+WDA TG LR ++RAY+
Sbjct: 202 MVPVLRMVEGDTIYDYCWYSLMSSSQPDTSYVASSSRENPIHIWDAFTGELRASFRAYNH 261
Query: 170 VDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIA 229
+DE+TAA S+ F+P G+++F G+N++VRVF RPGRD E +T K+GQ+GI+S IA
Sbjct: 262 LDELTAAHSLCFSPDGSQLFCGFNRTVRVFSTSRPGRDCEVRATF-AKKQGQSGIISCIA 320
Query: 230 FSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPY 289
FSP+ + A GSY +T +Y D+ L +L G +GG+TH+ F DGN ++G RKD
Sbjct: 321 FSPSQP-LYACGSYGRTLGLYAWDDGSPLALLGGHQGGITHLCFHPDGNLFFSGARKDAE 379
Query: 290 ILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQ-----TG 344
+LCWDLR+ +++ L R TNQRI FD++PSG+ L +G +G+V ++D+ +
Sbjct: 380 LLCWDLRQPGHLLWSLSREVT-TNQRIYFDLDPSGQFLVSGNTNGMVSVWDISGAFGDSS 438
Query: 345 KW--ISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFEDLHLSGDE 392
K + F D NG S HP LP+ A++SG R FP E + SGDE
Sbjct: 439 KLGPVMTFLPQKDCTNGVSLHPSLPLLATASGQRMFP----EPTN-SGDE 483
|
|
| MGI|MGI:2384933 Wrap53 "WD repeat containing, antisense to TP53" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 723 (259.6 bits), Expect = 1.8e-71, P = 1.8e-71
Identities = 158/384 (41%), Positives = 228/384 (59%)
Query: 20 EVTEAAQENQQEY----TWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSF 75
E TE E + E T+ F P +++F T S NFLKG KW+PDGS
Sbjct: 111 EATEGVSEERAEVDEGDTFWTYSFSQVPRYLSGSWSEFSTRS--ENFLKGCKWAPDGSCI 168
Query: 76 LTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASD 135
LT+S D LRI++LP S D L + EG+++YD+CW+ MS++
Sbjct: 169 LTNSADNVLRIYNLPPELYSEQEQV-----DYAEMVPVLRMVEGDTIYDYCWYSLMSSTQ 223
Query: 136 PTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKS 195
P + AS++R++PIH+WDA TG LR ++RAY+ +DE+TAA S+ F+P G+++F G+N++
Sbjct: 224 PDTSYVASSSRENPIHIWDAFTGELRASFRAYNHLDELTAAHSLCFSPDGSQLFCGFNRT 283
Query: 196 VRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM 255
VRVF RPGRD E +T K+GQ+GI+S IAFSP+ + A GSY +T +Y D+
Sbjct: 284 VRVFSTSRPGRDCEVRATF-AKKQGQSGIISCIAFSPSQP-LYACGSYGRTIGLYAWDDG 341
Query: 256 ELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQR 315
L +L G +GG+TH+ F DGN ++G RKD +LCWDLR+ +++ L R TNQR
Sbjct: 342 SPLALLGGHQGGITHLCFHPDGNLFFSGARKDAELLCWDLRQPGHLLWSLSREVT-TNQR 400
Query: 316 ILFDIEPSGRHLGTGGQDGLVHIYDLQTG-------KWISGFQAAADTVNGFSFHPFLPM 368
I FD++PSG+ L +G G+V ++D+ + + F D NG S HP LP+
Sbjct: 401 IYFDLDPSGQFLVSGNTSGVVSVWDISGALSDDSKLEPVVTFLPQKDCTNGVSLHPTLPL 460
Query: 369 AASSSGHRRFPVDDFEDLHLSGDE 392
A++SG R FP E + SGDE
Sbjct: 461 LATASGQRVFP----EPTN-SGDE 479
|
|
| RGD|1359624 Wrap53 "WD repeat containing, antisense to TP53" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 721 (258.9 bits), Expect = 2.9e-71, P = 2.9e-71
Identities = 155/378 (41%), Positives = 232/378 (61%)
Query: 23 EAAQENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDK 82
E A ++ + W VP + + +++F T S NFLKG KW+PDGS LT+S D
Sbjct: 119 EPAAVDEGDIFWSYSFSQVPQYLSGS-WSEFSTRS--ENFLKGCKWAPDGSCILTNSADN 175
Query: 83 TLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFA 142
LRI++LP ++ + S D L + EG+++YD+CW+ MS++ P + A
Sbjct: 176 VLRIYNLPP-----ELYSESEQVDYAEMVPVLRMVEGDTIYDYCWYSLMSSTQPDTSYVA 230
Query: 143 STTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVH 202
S++R++PIH+WDA TG LR ++RAY+ +DE+TAA S+ F+P G+++F G+N++VRVF
Sbjct: 231 SSSRENPIHIWDAFTGELRASFRAYNHLDELTAAHSLCFSPDGSQLFCGFNRTVRVFSTS 290
Query: 203 RPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH 262
RPGRD E +T K+GQ+GI+S +AFSP + A GSY +T +Y D+ L +L
Sbjct: 291 RPGRDCEVRTTF-AKKQGQSGIISCLAFSPAQP-LYACGSYGRTLGLYAWDDGSPLALLG 348
Query: 263 GQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEP 322
G +GG+TH+ F DGN ++G RKD +LCWDLR+ +++ L R TNQRI FD++P
Sbjct: 349 GHQGGITHLCFHPDGNLFFSGARKDAELLCWDLRQPGHLLWSLSREVT-TNQRIYFDLDP 407
Query: 323 SGRHLGTGGQDGLVHIYDLQTGKW--------ISGFQAAADTVNGFSFHPFLPMAASSSG 374
SG+ L +G G+V ++D+ +G + + F D NG S HP LP+ A++SG
Sbjct: 408 SGQFLVSGNTSGVVSVWDI-SGAFSDCKQLEPVMTFLPQDDCTNGVSLHPTLPLLATASG 466
Query: 375 HRRFPVDDFEDLHLSGDE 392
R FP E + SGDE
Sbjct: 467 QRMFP----EPTN-SGDE 479
|
|
| UNIPROTKB|F1ST42 WRAP53 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 716 (257.1 bits), Expect = 9.9e-71, P = 9.9e-71
Identities = 157/376 (41%), Positives = 226/376 (60%)
Query: 23 EAAQENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDK 82
E A E++ TW F P +++F T P NFLKG KW+PDGS LT+S D
Sbjct: 126 EPAPEDEGYTTWNY-SFSQLPRFLSGSWSEFSTQ--PENFLKGCKWAPDGSCILTNSADN 182
Query: 83 TLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFA 142
LRI++LP S + A+ L + EG+++YD+CW+ MS++ P + A
Sbjct: 183 VLRIYNLPPELYS-EGEQLEYAE----MAPVLRMMEGDTIYDYCWYSLMSSAQPDTSYVA 237
Query: 143 STTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVH 202
S++R +PIH+WDA TG LR ++R+Y+ +DE+TAA S+ F+P G+++F G+N++VRVF
Sbjct: 238 SSSRQNPIHIWDAFTGELRASFRSYNHLDELTAAHSLCFSPDGSQLFCGFNRTVRVFSTS 297
Query: 203 RPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH 262
RPGRD E +T ++GQ+GI+S IAFSPT + A GSY ++ +Y D+ L +L
Sbjct: 298 RPGRDCEVRATF-AKRQGQSGIISCIAFSPTQP-LYACGSYGRSLGLYAWDDGSPLALLG 355
Query: 263 GQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEP 322
G +GGVTH+ F DGN ++G RKD +LCWDLR+ ++ L R TNQRI FD++P
Sbjct: 356 GHQGGVTHLCFHPDGNRFFSGARKDAELLCWDLRQPANPLWSLSREVT-TNQRIYFDLDP 414
Query: 323 SGRHLGTGGQDGLVHIYDLQ----TGKW--ISGFQAAADTVNGFSFHPFLPMAASSSGHR 376
+G+ L +G G V ++D GK + F D NG S HP LP+ A++SG R
Sbjct: 415 TGQFLVSGSTSGAVSVWDTSGAGHEGKPEPVLSFLPQKDCTNGVSLHPSLPLLATASGQR 474
Query: 377 RFPVDDFEDLHLSGDE 392
FP + E SGDE
Sbjct: 475 VFP-EPTE----SGDE 485
|
|
| UNIPROTKB|Q9BUR4 WRAP53 "Telomerase Cajal body protein 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 715 (256.8 bits), Expect = 1.3e-70, P = 1.3e-70
Identities = 155/376 (41%), Positives = 228/376 (60%)
Query: 23 EAAQENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDK 82
E A E++ + W F P +++F T P NFLKG KW+PDGS LT+S D
Sbjct: 135 EPAAEDEGDTAWNY-SFSQLPRFLSGSWSEFSTQ--PENFLKGCKWAPDGSCILTNSADN 191
Query: 83 TLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFA 142
LRI++LP + ++ A+ L + EG+++YD+CW+ MS++ P + A
Sbjct: 192 ILRIYNLPPE-LYHEGEQVEYAE----MVPVLRMVEGDTIYDYCWYSLMSSAQPDTSYVA 246
Query: 143 STTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVH 202
S++R++PIH+WDA TG LR ++RAY+ +DE+TAA S+ F+P G+++F G+N++VRVF
Sbjct: 247 SSSRENPIHIWDAFTGELRASFRAYNHLDELTAAHSLCFSPDGSQLFCGFNRTVRVFSTA 306
Query: 203 RPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH 262
RPGRD E +T K+GQ+GI+S IAFSP + A GSY ++ +Y D+ L +L
Sbjct: 307 RPGRDCEVRATF-AKKQGQSGIISCIAFSPAQP-LYACGSYGRSLGLYAWDDGSPLALLG 364
Query: 263 GQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEP 322
G +GG+TH+ F DGN ++G RKD +LCWDLR++ ++ L R TNQRI FD++P
Sbjct: 365 GHQGGITHLCFHPDGNRFFSGARKDAELLCWDLRQSGYPLWSLGREVT-TNQRIYFDLDP 423
Query: 323 SGRHLGTGGQDGLVHIYDLQ----TGKW--ISGFQAAADTVNGFSFHPFLPMAASSSGHR 376
+G+ L +G G V ++D GK + F D NG S HP LP+ A++SG R
Sbjct: 424 TGQFLVSGSTSGAVSVWDTDGPGNDGKPEPVLSFLPQKDCTNGVSLHPSLPLLATASGQR 483
Query: 377 RFPVDDFEDLHLSGDE 392
FP + E SGDE
Sbjct: 484 VFP-EPTE----SGDE 494
|
|
| UNIPROTKB|F1MJW9 WRAP53 "Telomerase Cajal body protein 1" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 710 (255.0 bits), Expect = 4.3e-70, P = 4.3e-70
Identities = 156/383 (40%), Positives = 231/383 (60%)
Query: 18 DTE-VTEAAQENQQEYT-WPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSF 75
D E V+E + YT W F P +++F T P NFLKG KW+PDGS
Sbjct: 119 DVEGVSEELTPEDEGYTIWNY-NFSQVPRFLSGSWSEFITQ--PENFLKGCKWAPDGSCI 175
Query: 76 LTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASD 135
LT+S D LRI++LP Y+ + L + EG+++YD+CW+ MS++
Sbjct: 176 LTNSADNILRIYNLPPE--LYNEGE---QLEYAEMAPVLRMVEGDTIYDYCWYSLMSSAQ 230
Query: 136 PTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKS 195
P + AS++R++PIH+WDA TG LR ++R+Y+ +DE+TAA S+ F+P G+++F G+N++
Sbjct: 231 PDTSYVASSSRENPIHIWDAFTGELRASFRSYNHLDELTAAHSLCFSPDGSQLFCGFNRT 290
Query: 196 VRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM 255
VRVF RPGRD E +T ++GQ+GI+S IAFSPT + A GSY ++ +Y ++
Sbjct: 291 VRVFSTSRPGRDCEVRTTF-AKRQGQSGIISCIAFSPTQP-LYACGSYGRSLGLYTWEDG 348
Query: 256 ELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQR 315
L +L G +GG+TH+ F DGN ++G RKD +LCWDLR+ ++ L R TNQR
Sbjct: 349 SPLALLGGHQGGITHLCFHPDGNCFFSGARKDAELLCWDLRQLGHPLWSLSREVT-TNQR 407
Query: 316 ILFDIEPSGRHLGTGGQDGLVHIYD-----LQTG-KWISGFQAAADTVNGFSFHPFLPMA 369
I FD++P+G+ L +G G V ++D L++ + + FQ D NG S HP LP+
Sbjct: 408 IYFDLDPTGQFLVSGSTSGAVSVWDTGGAGLESKPEPVLSFQPQKDCTNGVSLHPSLPLL 467
Query: 370 ASSSGHRRFPVDDFEDLHLSGDE 392
A++SG R FP + E SGDE
Sbjct: 468 ATASGQRVFP-EPTE----SGDE 485
|
|
| UNIPROTKB|Q3SWZ7 WRAP53 "Telomerase Cajal body protein 1" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 710 (255.0 bits), Expect = 4.3e-70, P = 4.3e-70
Identities = 156/383 (40%), Positives = 231/383 (60%)
Query: 18 DTE-VTEAAQENQQEYT-WPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSF 75
D E V+E + YT W F P +++F T P NFLKG KW+PDGS
Sbjct: 119 DVEGVSEELTPEDEGYTIWNY-NFSQVPRFLSGSWSEFITQ--PENFLKGCKWAPDGSCI 175
Query: 76 LTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASD 135
LT+S D LRI++LP Y+ + L + EG+++YD+CW+ MS++
Sbjct: 176 LTNSADNILRIYNLPPE--LYNEGE---QLEYAEMAPVLRMVEGDTIYDYCWYSLMSSAQ 230
Query: 136 PTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKS 195
P + AS++R++PIH+WDA TG LR ++R+Y+ +DE+TAA S+ F+P G+++F G+N++
Sbjct: 231 PDTSYVASSSRENPIHIWDAFTGELRASFRSYNHLDELTAAHSLCFSPDGSQLFCGFNRT 290
Query: 196 VRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM 255
VRVF RPGRD E +T ++GQ+GI+S IAFSPT + A GSY ++ +Y ++
Sbjct: 291 VRVFSTSRPGRDCEVRTTF-AKRQGQSGIISCIAFSPTQP-LYACGSYGRSLGLYTWEDG 348
Query: 256 ELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQR 315
L +L G +GG+TH+ F DGN ++G RKD +LCWDLR+ ++ L R TNQR
Sbjct: 349 SPLALLGGHQGGITHLCFHPDGNCFFSGARKDAELLCWDLRQLGHPLWSLSREVT-TNQR 407
Query: 316 ILFDIEPSGRHLGTGGQDGLVHIYD-----LQTG-KWISGFQAAADTVNGFSFHPFLPMA 369
I FD++P+G+ L +G G V ++D L++ + + FQ D NG S HP LP+
Sbjct: 408 IYFDLDPTGQFLVSGSTSGAVSVWDTGGAGLESKPEPVLSFQPQKDCTNGVSLHPSLPLL 467
Query: 370 ASSSGHRRFPVDDFEDLHLSGDE 392
A++SG R FP + E SGDE
Sbjct: 468 ATASGQRVFP-EPTE----SGDE 485
|
|
| FB|FBgn0031782 WDR79 "WD repeat domain 79 homolog" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 498 (180.4 bits), Expect = 1.2e-47, P = 1.2e-47
Identities = 111/330 (33%), Positives = 175/330 (53%)
Query: 55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL 114
+S+ ++ KG WSPDG+ L + + +P + Y + A+ ++ +
Sbjct: 177 SSTEAQHYTKGCYWSPDGTCLLVPVHLDGMHVIEMPSD--LYSADTVQPARSLTKLQSEV 234
Query: 115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEIT 174
V EG +VYD W+PHM++ P +C++ +T + PIH+WDA G LRC+Y YDAVDE+
Sbjct: 235 HVPEGGTVYDCVWYPHMNSLQPETCLWLATRQHEPIHMWDAFDGSLRCSYSGYDAVDEVM 294
Query: 175 AAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTH 234
AA S+AF+ G +I+AGY + +++FD RPGR + Y +S IA + H
Sbjct: 295 AAISLAFSHDGEQIYAGYKRCIKIFDTSRPGRFCDDYPVKFA--------ISCIAQTTAH 346
Query: 235 TGMLAIGS---YSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGN---YLYTGGRKDP 288
L G+ Y Q + L+ L G +GG+T +++ GN +L++G RK
Sbjct: 347 PHTLTCGNWHGYIQHFDLRCSHKQGPLFTLGGHKGGITQLRYGEFGNGEWHLFSGARKCD 406
Query: 289 YILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWIS 348
IL WD+R Q + +L R + TNQRI FD+ L +G G V+++DL+ S
Sbjct: 407 KILQWDMRNYKQPLVELQRHVD-TNQRIQFDLASDSNWLASGDTRGFVNVWDLKKYGDPS 465
Query: 349 GFQAAADTVNGFSFHPFLPMAASSSGHRRF 378
+D NG + +P +P+ A+SSG F
Sbjct: 466 VLPLHSDCCNGVALNPAMPILATSSGQFHF 495
|
|
| POMBASE|SPCC1020.09 gnr1 "heterotrimeric G protein beta subunit Gnr1" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
Identities = 92/310 (29%), Positives = 142/310 (45%)
Query: 59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTE 118
P NF +WSPDGS+ L+ +ED+ L +++P + +S + SY+
Sbjct: 45 PLNFFHSSRWSPDGSTILSLTEDQCLNCWNVPFSDLSKKADGPLNFSKHLSYKYQ----S 100
Query: 119 GESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFS 178
E+VY + W+ M DP+S +FA ++RD PI L + TTG + +Y D + +
Sbjct: 101 PETVYSYSWYSRMKLDDPSSNLFAVSSRDQPIKLINFTTGKNKASYHMIDHQERYQGSHC 160
Query: 179 VAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKE-----GQAGIMSAIAFSPT 233
+ F G + AG + F++ ++ + G K GI S + +P
Sbjct: 161 LQFTNDGEYLIAGDKNCLHHFNIRTGCKEPVMTTVTHGYKVPLWEFSLKGIQSCFSLNPM 220
Query: 234 HTGMLAIGSYSQTSAIYREDNMELLYVLHGQE--GGVTHVQFSRDGNYLYTGGRKDPYIL 291
+ LA+G+YS IY + + E GVTH+Q+ DG LY G R I
Sbjct: 221 DSKTLAVGTYSNRVGIYNDCGRRPCQLEFSIERGNGVTHLQWCEDGEKLYVGSRCSDKIE 280
Query: 292 CWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIY---DLQTGKWIS 348
WD+R +VY L TNQRILFD + L GG DG + + DL ++
Sbjct: 281 VWDIRYVRDMVYALEGHRGDTNQRILFDTDKKDEILA-GGTDGSIRRWRNKDLVEETHVT 339
Query: 349 G-FQAAADTV 357
G + +TV
Sbjct: 340 GNYDLTVNTV 349
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 430 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 5e-24 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 5e-23 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-19 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-18 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-17 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 7e-15 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 6e-14 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 6e-09 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 2e-04 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 2e-04 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 5e-04 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 5e-24
Identities = 78/309 (25%), Positives = 124/309 (40%), Gaps = 44/309 (14%)
Query: 66 IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDF 125
+ +SPDG T S D T++++ L + +L G V D
Sbjct: 15 VAFSPDGKLLATGSGDGTIKVWDL----------------ETGELLRTLKGHTG-PVRDV 57
Query: 126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG 185
AS + D I LWD TG T + + SVAF+P G
Sbjct: 58 AASAD-------GTYLASGSSDKTIRLWDLETGECVRTLTGHT--SYV---SSVAFSPDG 105
Query: 186 TKIFA-GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS 244
+ + +K+++V+DV + +TL+G+ + S +AFSP T +A S
Sbjct: 106 RILSSSSRDKTIKVWDV----ETGKCLTTLRGH---TDWVNS-VAFSPDGT-FVASSSQD 156
Query: 245 QTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYK 304
T ++ + + L G G V V FS DG L + D I WDL +
Sbjct: 157 GTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS-DGTIKLWDLSTGKCL--G 213
Query: 305 LYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHP 364
R E+ + F P G L +G +DG + ++DL+TG+ + ++V ++ P
Sbjct: 214 TLRGHENGVNSVAFS--PDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSP 271
Query: 365 FLPMAASSS 373
AS S
Sbjct: 272 DGKRLASGS 280
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 97.8 bits (244), Expect = 5e-23
Identities = 76/290 (26%), Positives = 120/290 (41%), Gaps = 44/290 (15%)
Query: 52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYE 111
RT ++ + S DG+ + S DKT+R++ L +
Sbjct: 43 LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDL-----------------ETGEC 85
Query: 112 ASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVD 171
+ V + P + +S++RD I +WD TG +C D
Sbjct: 86 VRTLTGHTSYVSSVAFSPDGR-------ILSSSSRDKTIKVWDVETG--KCLTTLRGHTD 136
Query: 172 EITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAF 230
+ SVAF+P GT + + + +++++D+ R + +TL G+ G ++++AF
Sbjct: 137 WVN---SVAFSPDGTFVASSSQDGTIKLWDL----RTGKCVATLTGHT----GEVNSVAF 185
Query: 231 SPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYI 290
SP L S T ++ + L L G E GV V FS DG L G +D I
Sbjct: 186 SPD-GEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLL-ASGSEDGTI 243
Query: 291 LCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYD 340
WDLR + V L S HTN P G+ L +G DG + I+D
Sbjct: 244 RVWDLRTG-ECVQTL---SGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 88.2 bits (219), Expect = 1e-19
Identities = 68/257 (26%), Positives = 108/257 (42%), Gaps = 33/257 (12%)
Query: 121 SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRA-YDAVDEITAAFSV 179
V + P + A+ + D I +WD TG L T + V V
Sbjct: 11 GVTCVAFSPDGK-------LLATGSGDGTIKVWDLETGELLRTLKGHTGPVR------DV 57
Query: 180 AFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGML 238
A + GT + +K++R++D+ E TL G+ +S++AFSP +L
Sbjct: 58 AASADGTYLASGSSDKTIRLWDL----ETGECVRTLTGHTSY----VSSVAFSPDGR-IL 108
Query: 239 AIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKA 298
+ S +T ++ + + L L G V V FS DG ++ +D I WDLR
Sbjct: 109 SSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFV-ASSSQDGTIKLWDLRTG 167
Query: 299 VQVVYKLYRSSEHTNQ--RILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADT 356
+ V L HT + + F P G L + DG + ++DL TGK + + +
Sbjct: 168 -KCVATLT---GHTGEVNSVAFS--PDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENG 221
Query: 357 VNGFSFHPFLPMAASSS 373
VN +F P + AS S
Sbjct: 222 VNSVAFSPDGYLLASGS 238
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 87.1 bits (214), Expect = 2e-18
Identities = 80/340 (23%), Positives = 134/340 (39%), Gaps = 45/340 (13%)
Query: 54 RTSSIPNNFLKGIKWSPDGSSFLTSSE-DKTLRIFSLPENGISYDVNACSLAKDQDSYEA 112
RT + + + +SPDG + S D T++++ L +
Sbjct: 149 RTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDL-----------------RTGKPL 191
Query: 113 SLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDE 172
S + + V + P + AS + D I LWD +TG L + + +
Sbjct: 192 STLAGHTDPVSSLAFSPDGG------LLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV 245
Query: 173 ITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFS 231
+++ F+P G+ + + ++R++D+ TL G+ + ++AFS
Sbjct: 246 VSS-----FSPDGSLLASGSSDGTIRLWDLRS---SSSLLRTLSGHSSS----VLSVAFS 293
Query: 232 PTHTGMLAIGSYSQTSAIYREDNMELLYVLH--GQEGGVTHVQFSRDGNYLYTGGRKDPY 289
P +LA GS T ++ + +LL L G EG V+ + FS DG+ L +GG D
Sbjct: 294 PDG-KLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGT 352
Query: 290 ILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISG 349
I WDLR + E + + P GR + +G DG V ++DL TG +
Sbjct: 353 IRLWDLRTGKPLKTL-----EGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRN 407
Query: 350 FQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFEDLHLS 389
V F P AS S + D + S
Sbjct: 408 LDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKS 447
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 84.0 bits (206), Expect = 2e-17
Identities = 79/325 (24%), Positives = 129/325 (39%), Gaps = 39/325 (12%)
Query: 55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL 114
+ + I +SPDG L+ S D T++++ L SL
Sbjct: 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLI---------------KSL 104
Query: 115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEIT 174
SV S+ D S + AS++ D + LWD +T
Sbjct: 105 EGLHDSSVSKLAL----SSPDGNSILLASSSLDGTVKLWDLSTPGK----LIRTLEGHSE 156
Query: 175 AAFSVAFNPTGTKIFAG--YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSP 232
+ S+AF+P G + +G + +++++D+ R + STL G+ +S++AFSP
Sbjct: 157 SVTSLAFSPDGKLLASGSSLDGTIKLWDL----RTGKPLSTLAGHT----DPVSSLAFSP 208
Query: 233 THTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILC 292
++A GS T ++ +LL FS DG+ L +G D I
Sbjct: 209 DGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSS-DGTIRL 267
Query: 293 WDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWIS--GF 350
WDLR + ++ L S P G+ L +G DG V ++DL+TGK +S
Sbjct: 268 WDLRSSSSLLRTLSGHSSSVLSVAF---SPDGKLLASGSSDGTVRLWDLETGKLLSSLTL 324
Query: 351 QAAADTVNGFSFHPFLPMAASSSGH 375
+ V+ SF P + S
Sbjct: 325 KGHEGPVSSLSFSPDGSLLVSGGSD 349
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 75.9 bits (185), Expect = 7e-15
Identities = 65/319 (20%), Positives = 116/319 (36%), Gaps = 22/319 (6%)
Query: 56 SSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLV 115
S+ N K +K + + L + S + + + SL D L
Sbjct: 6 STSSENKSKLLK---KSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLR 62
Query: 116 VTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITA 175
E S+ + P + S + D I LWD G ++ + + + +
Sbjct: 63 GHED-SITSIAF-------SPDGELLLSGSSDGTIKLWDLDNG--EKLIKSLEGLHDSSV 112
Query: 176 AFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHT 235
+ +P G I + + + TL+G+ E ++++AFSP
Sbjct: 113 SKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSE----SVTSLAFSPDGK 168
Query: 236 GMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDL 295
+ + S T ++ + L L G V+ + FS DG L G D I WDL
Sbjct: 169 LLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDL 228
Query: 296 RKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTG-KWISGFQAAA 354
+ L S H++ + P G L +G DG + ++DL++ + +
Sbjct: 229 STGKLLRSTL---SGHSDSVVS-SFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHS 284
Query: 355 DTVNGFSFHPFLPMAASSS 373
+V +F P + AS S
Sbjct: 285 SSVLSVAFSPDGKLLASGS 303
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 6e-14
Identities = 52/155 (33%), Positives = 75/155 (48%), Gaps = 6/155 (3%)
Query: 219 EGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGN 278
+G G ++ +AFSP +LA GS T ++ + ELL L G G V V S DG
Sbjct: 6 KGHTGGVTCVAFSP-DGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGT 64
Query: 279 YLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHI 338
YL +G D I WDL + V L + HT+ P GR L + +D + +
Sbjct: 65 YLASGS-SDKTIRLWDLET-GECVRTL---TGHTSYVSSVAFSPDGRILSSSSRDKTIKV 119
Query: 339 YDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSS 373
+D++TGK ++ + D VN +F P ASSS
Sbjct: 120 WDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSS 154
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 6e-09
Identities = 40/131 (30%), Positives = 55/131 (41%), Gaps = 9/131 (6%)
Query: 257 LLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTN--Q 314
L L G GGVT V FS DG L TG D I WDL L HT +
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSG-DGTIKVWDLETGEL----LRTLKGHTGPVR 55
Query: 315 RILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSG 374
+ G +L +G D + ++DL+TG+ + V+ +F P + +SSS
Sbjct: 56 DVAAS--ADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSR 113
Query: 375 HRRFPVDDFED 385
+ V D E
Sbjct: 114 DKTIKVWDVET 124
|
Length = 289 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 2e-04
Identities = 20/41 (48%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 254 NMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWD 294
+ ELL L G G VT V FS DG YL +G D I WD
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSD-DGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 2e-04
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 255 MELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWD 294
+LL L G G VT V FS DGN L +G D + WD
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSD-DGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.0 bits (97), Expect = 5e-04
Identities = 40/204 (19%), Positives = 69/204 (33%), Gaps = 37/204 (18%)
Query: 48 HFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQ 107
+ RT S ++ + + +SPDG + S D T+R++ L +
Sbjct: 272 SSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDL---------------ETG 316
Query: 108 DSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAY 167
+ + V + P S + + + D I LWD TG T +
Sbjct: 317 KLLSSLTLKGHEGPVSSLSFSPDG------SLLVSGGSDDGTIRLWDLRTGKPLKTLEGH 370
Query: 168 DAVDEITAAFSVAFNPTGTKI-FAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMS 226
V SV+F+P G + + +VR++D+
Sbjct: 371 SNV------LSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTS------- 417
Query: 227 AIAFSPTHTGMLAIGSYSQTSAIY 250
+ FSP LA GS T ++
Sbjct: 418 -LDFSPDG-KSLASGSSDNTIRLW 439
|
Length = 466 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 430 | |||
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 100.0 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 100.0 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 100.0 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 100.0 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| PTZ00421 | 493 | coronin; Provisional | 100.0 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 100.0 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.98 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.98 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.98 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.98 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.98 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.98 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.97 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.97 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.97 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.97 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.97 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.97 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.97 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.97 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.97 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.97 | |
| PTZ00421 | 493 | coronin; Provisional | 99.97 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.97 | |
| PTZ00420 | 568 | coronin; Provisional | 99.97 | |
| PTZ00420 | 568 | coronin; Provisional | 99.97 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.97 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.97 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.97 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.97 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.97 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.96 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.96 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.96 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.96 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.96 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.96 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.96 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.96 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.96 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.96 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.96 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.96 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.96 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.95 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.95 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.95 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.95 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.95 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.95 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.95 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.95 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.95 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.95 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.95 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.95 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.94 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.94 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.94 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.94 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.93 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.93 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.93 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.93 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.92 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.92 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.92 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.92 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.92 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.92 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.92 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.91 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.91 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.91 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.9 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.9 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.89 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.89 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.89 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.89 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.89 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.89 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.88 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.88 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.88 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.88 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.88 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.87 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.87 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.87 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.86 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.86 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.86 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.86 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.86 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.85 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.85 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.85 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.85 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.84 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.83 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.83 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.83 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.82 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.82 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.82 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.82 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.82 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.81 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.81 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.8 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.79 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.79 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.79 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.78 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.78 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.78 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.77 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.76 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.76 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.76 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.76 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.76 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.76 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.75 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.75 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.74 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.73 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.73 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.73 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.72 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.72 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.72 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.72 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.72 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.71 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.71 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.7 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.69 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.69 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.69 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.68 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.67 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.67 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.66 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.66 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.66 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.66 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.65 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.64 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.63 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.63 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.62 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.62 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.6 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.59 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.59 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.58 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.57 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 99.57 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.56 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.56 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.54 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.54 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.53 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.53 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.52 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.51 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.51 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.5 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.49 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.49 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.47 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.46 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.46 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.45 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 99.44 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 99.4 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.39 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.38 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 99.36 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.36 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.36 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.33 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.33 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.31 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.3 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.29 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.29 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.28 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.28 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 99.28 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 99.27 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 99.23 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.23 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.18 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.18 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 99.17 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.17 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 99.14 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 99.11 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 99.1 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 99.09 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.06 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 99.06 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 99.05 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.05 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 99.04 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 99.03 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 99.02 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.99 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.98 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.98 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.95 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.94 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.91 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.9 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.88 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.87 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.86 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.83 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.8 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.78 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.77 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.76 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.76 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.75 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.72 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.71 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.7 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.7 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.69 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.65 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.6 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.6 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 98.58 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.57 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 98.55 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.55 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.54 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.53 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 98.53 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.46 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.45 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 98.42 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 98.41 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.41 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.4 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.39 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.38 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.37 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.36 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.36 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.35 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 98.31 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 98.31 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 98.27 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 98.24 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 98.19 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.18 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 98.17 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 98.15 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.14 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 98.13 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.04 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 98.04 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.02 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 98.02 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 98.01 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.01 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.01 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.0 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.99 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.99 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.98 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.95 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.94 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.93 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.87 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.86 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.78 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 97.76 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.63 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.63 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.6 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.59 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.57 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.57 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.53 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 97.52 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 97.49 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 97.48 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 97.46 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 97.43 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 97.36 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.33 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 97.26 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 97.2 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 97.2 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 97.18 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 97.12 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 97.11 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 97.1 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 97.07 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 97.07 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 97.05 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 97.03 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.0 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 96.98 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 96.96 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 96.89 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 96.86 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 96.8 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 96.76 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 96.74 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 96.72 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 96.7 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 96.68 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 96.68 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 96.66 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 96.66 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 96.65 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 96.57 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 96.55 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 96.51 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 96.46 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 96.45 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 96.31 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 96.29 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 96.15 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 96.14 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 96.08 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 96.07 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 96.05 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 96.04 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 96.03 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 96.0 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 95.91 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 95.79 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 95.78 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 95.78 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 95.76 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 95.59 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 95.56 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 95.54 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 95.35 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 95.27 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 95.21 | |
| PRK10115 | 686 | protease 2; Provisional | 95.15 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 95.0 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 94.97 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 94.66 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 94.48 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 94.24 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 93.98 | |
| PRK10115 | 686 | protease 2; Provisional | 93.92 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 93.74 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 93.59 | |
| PF11635 | 753 | Med16: Mediator complex subunit 16; InterPro: IPR0 | 93.54 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 93.54 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 93.48 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 93.48 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 93.47 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 93.41 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 93.31 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 93.19 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 92.87 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 92.67 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 92.57 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 92.34 | |
| KOG1896 | 1366 | consensus mRNA cleavage and polyadenylation factor | 92.31 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 92.0 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 91.76 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 91.69 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 91.64 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 91.57 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 91.31 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 91.18 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 90.96 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 90.69 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 90.08 | |
| KOG1983 | 993 | consensus Tomosyn and related SNARE-interacting pr | 89.66 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 89.43 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 88.98 | |
| smart00036 | 302 | CNH Domain found in NIK1-like kinases, mouse citro | 88.79 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 88.62 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 88.55 | |
| COG5290 | 1243 | IkappaB kinase complex, IKAP component [Transcript | 88.47 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 87.8 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 87.8 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 87.7 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 87.21 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 86.98 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 86.9 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 86.6 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 86.34 | |
| PF01731 | 86 | Arylesterase: Arylesterase; InterPro: IPR002640 Th | 86.22 | |
| PF08801 | 422 | Nucleoporin_N: Nup133 N terminal like; InterPro: I | 85.9 | |
| PF08801 | 422 | Nucleoporin_N: Nup133 N terminal like; InterPro: I | 85.84 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 85.62 | |
| PLN02193 | 470 | nitrile-specifier protein | 85.49 | |
| PLN02153 | 341 | epithiospecifier protein | 84.6 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 84.34 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 83.83 | |
| TIGR03032 | 335 | conserved hypothetical protein TIGR03032. This pro | 83.29 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 83.06 | |
| smart00564 | 33 | PQQ beta-propeller repeat. Beta-propeller repeat o | 82.93 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 82.64 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 82.59 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 82.32 | |
| TIGR02171 | 912 | Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou | 81.69 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 81.28 |
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-54 Score=346.97 Aligned_cols=290 Identities=22% Similarity=0.344 Sum_probs=249.5
Q ss_pred eecceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeec
Q 014125 49 FYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWF 128 (430)
Q Consensus 49 ~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 128 (430)
..++...+.||.++|.|++|+|+|+.|+||+.|.++|+||+.+..... ...+|.+.|.+++|
T Consensus 104 vtrCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~-----------------t~KgH~~WVlcvaw- 165 (480)
T KOG0271|consen 104 VTRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLF-----------------TCKGHKNWVLCVAW- 165 (480)
T ss_pred cceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcce-----------------eecCCccEEEEEEE-
Confidence 345667899999999999999999999999999999999998754333 33456689999999
Q ss_pred cccCccCCCCceEEEEeCCCcEEEEeccCCcee-eeeecccccccccceEEEEECC-----CCcEEE-EEcCCeEEEEEc
Q 014125 129 PHMSASDPTSCVFASTTRDHPIHLWDATTGLLR-CTYRAYDAVDEITAAFSVAFNP-----TGTKIF-AGYNKSVRVFDV 201 (430)
Q Consensus 129 ~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~-~~~d~~i~v~d~ 201 (430)
+|||+.||+|+.||+|++||..+|+.+ ..+..|.. .|++++|.| ..++++ ++.||.++|||+
T Consensus 166 ------sPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K-----~It~Lawep~hl~p~~r~las~skDg~vrIWd~ 234 (480)
T KOG0271|consen 166 ------SPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKK-----WITALAWEPLHLVPPCRRLASSSKDGSVRIWDT 234 (480)
T ss_pred ------CCCcchhhccccCCeEEEecCCCCCcccccccCccc-----ceeEEeecccccCCCccceecccCCCCEEEEEc
Confidence 889999999999999999999998754 34555544 999999976 456777 458999999999
Q ss_pred CCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEc-------
Q 014125 202 HRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFS------- 274 (430)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~------- 274 (430)
..+ .......+|..+|+|+.|. +..++++|+.|++|++|+...|.+...+++|...|+.++.+
T Consensus 235 ~~~--------~~~~~lsgHT~~VTCvrwG--G~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRt 304 (480)
T KOG0271|consen 235 KLG--------TCVRTLSGHTASVTCVRWG--GEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRT 304 (480)
T ss_pred cCc--------eEEEEeccCccceEEEEEc--CCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhc
Confidence 762 3334458999999999997 45699999999999999999999999999999999999877
Q ss_pred ----cCCC-------------------------EEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCC
Q 014125 275 ----RDGN-------------------------YLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGR 325 (430)
Q Consensus 275 ----~~~~-------------------------~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 325 (430)
|.++ .|++++ .|.++.+|+-....++.. +..+|...|+.+.||||++
T Consensus 305 gaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgs-Dd~tlflW~p~~~kkpi~---rmtgHq~lVn~V~fSPd~r 380 (480)
T KOG0271|consen 305 GAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGS-DDFTLFLWNPFKSKKPIT---RMTGHQALVNHVSFSPDGR 380 (480)
T ss_pred cccccccccCCChHHHHHHHHHHHHHhhccCcceeEEec-CCceEEEecccccccchh---hhhchhhheeeEEECCCcc
Confidence 2233 488888 999999999876655443 4478999999999999999
Q ss_pred EEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeec
Q 014125 326 HLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVD 381 (430)
Q Consensus 326 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw 381 (430)
++|+++.|..|++||.++|+.+.+|++|-.+|..++|+.|.++|++|+.|.+++||
T Consensus 381 ~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw 436 (480)
T KOG0271|consen 381 YIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVW 436 (480)
T ss_pred EEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEE
Confidence 99999999999999999999999999999999999999999999999977666666
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-50 Score=326.90 Aligned_cols=295 Identities=20% Similarity=0.295 Sum_probs=256.9
Q ss_pred ceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecccc
Q 014125 52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (430)
Q Consensus 52 ~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (430)
...+.++|...|.|++|+|||+.||+|+.||+|++||.++++.. .....+|...|.+++|.|..
T Consensus 149 p~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~----------------g~~l~gH~K~It~Lawep~h 212 (480)
T KOG0271|consen 149 PLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQI----------------GRALRGHKKWITALAWEPLH 212 (480)
T ss_pred cceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcc----------------cccccCcccceeEEeecccc
Confidence 44688999999999999999999999999999999999887542 23445677899999999875
Q ss_pred CccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCccccc
Q 014125 132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKY 211 (430)
Q Consensus 132 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~ 211 (430)
. .|..++||+++.||+|+|||+..+.++..+.+|.. +|+|+.|-.+|-+..++.|++|++|+...+
T Consensus 213 l--~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~-----~VTCvrwGG~gliySgS~DrtIkvw~a~dG------- 278 (480)
T KOG0271|consen 213 L--VPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTA-----SVTCVRWGGEGLIYSGSQDRTIKVWRALDG------- 278 (480)
T ss_pred c--CCCccceecccCCCCEEEEEccCceEEEEeccCcc-----ceEEEEEcCCceEEecCCCceEEEEEccch-------
Confidence 5 67788999999999999999999999999998877 999999977764444669999999998762
Q ss_pred ccccCCCCCCCcceEEEEEc-----------C------------------------CCCceEEEecCCCeEEEEEcCCc-
Q 014125 212 STLKGNKEGQAGIMSAIAFS-----------P------------------------THTGMLAIGSYSQTSAIYREDNM- 255 (430)
Q Consensus 212 ~~~~~~~~~~~~~v~~~~~~-----------~------------------------~~~~~l~~~~~dg~v~~~d~~~~- 255 (430)
.+...+.+|...|+.++.+ | +++..+++|+.|.++.+|+....
T Consensus 279 -~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~k 357 (480)
T KOG0271|consen 279 -KLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSK 357 (480)
T ss_pred -hHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccc
Confidence 3444557888888888887 1 12336999999999999997654
Q ss_pred eeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCc
Q 014125 256 ELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGL 335 (430)
Q Consensus 256 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 335 (430)
+++..+.+|..-|+.+.||||++++++++ .|..|++||.++++.. ..+.+|-..|+.++|+.|.++|++|+.|.+
T Consensus 358 kpi~rmtgHq~lVn~V~fSPd~r~IASaS-FDkSVkLW~g~tGk~l----asfRGHv~~VYqvawsaDsRLlVS~SkDsT 432 (480)
T KOG0271|consen 358 KPITRMTGHQALVNHVSFSPDGRYIASAS-FDKSVKLWDGRTGKFL----ASFRGHVAAVYQVAWSADSRLLVSGSKDST 432 (480)
T ss_pred cchhhhhchhhheeeEEECCCccEEEEee-cccceeeeeCCCcchh----hhhhhccceeEEEEeccCccEEEEcCCCce
Confidence 57888899999999999999999999999 9999999999998643 344789999999999999999999999999
Q ss_pred EEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeecC
Q 014125 336 VHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDD 382 (430)
Q Consensus 336 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~ 382 (430)
++||++++.++...+.+|.+.|.++.|+|||..+++++.|..+++|.
T Consensus 433 LKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 433 LKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred EEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 99999999999999999999999999999999999999887777773
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-50 Score=332.01 Aligned_cols=339 Identities=20% Similarity=0.228 Sum_probs=276.8
Q ss_pred hHHHHHHhhhheeccchhhhHHhhhcCceeeccccccCC---CCCcceeeecceeecccCCCceeEEEECcCCceEEEec
Q 014125 3 EEEQQQTLQQQQIYSDTEVTEAAQENQQEYTWPLIRFDV---PPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSS 79 (430)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~ 79 (430)
..++...+..+..++..+...+...+......|...-.. ................|-+.+|..+.||+|++.|||||
T Consensus 115 p~eL~~AR~~ia~ySl~Ra~~Rl~k~re~~e~p~~~~~~~~~~~~k~~~~~~l~~SQ~gd~rPis~~~fS~ds~~laT~s 194 (459)
T KOG0272|consen 115 PVELRVARLWIANYSLERAKLRLQKARERREIPDTEKALSRKEALKHLQSLELVCSQVGDTRPISGCSFSRDSKHLATGS 194 (459)
T ss_pred CHHHHHHHHHHHhccHHHHHHHHHHHHHhhcCCcchhhhHHHHHHHHhhhhhhhhhhccCCCcceeeEeecCCCeEEEee
Confidence 344445555555555555554444333322222210000 00111222234445667788999999999999999999
Q ss_pred CCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCc
Q 014125 80 EDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGL 159 (430)
Q Consensus 80 ~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 159 (430)
-+|.++||+.++.. ....+.+|...|.++.|+|.. ++..+|+|+.||++++|++.+..
T Consensus 195 wsG~~kvW~~~~~~-----------------~~~~l~gH~~~v~~~~fhP~~-----~~~~lat~s~Dgtvklw~~~~e~ 252 (459)
T KOG0272|consen 195 WSGLVKVWSVPQCN-----------------LLQTLRGHTSRVGAAVFHPVD-----SDLNLATASADGTVKLWKLSQET 252 (459)
T ss_pred cCCceeEeecCCcc-----------------eeEEEeccccceeeEEEccCC-----CccceeeeccCCceeeeccCCCc
Confidence 99999999988653 234566788999999997742 46789999999999999999998
Q ss_pred eeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceE
Q 014125 160 LRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGML 238 (430)
Q Consensus 160 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 238 (430)
++..+..|.. .|..++|+|+|++|. ++.|.+-++||+++.. ......+|...|.+++|.| ++.++
T Consensus 253 ~l~~l~gH~~-----RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~--------ElL~QEGHs~~v~~iaf~~-DGSL~ 318 (459)
T KOG0272|consen 253 PLQDLEGHLA-----RVSRVAFHPSGKFLGTASFDSTWRLWDLETKS--------ELLLQEGHSKGVFSIAFQP-DGSLA 318 (459)
T ss_pred chhhhhcchh-----hheeeeecCCCceeeecccccchhhcccccch--------hhHhhcccccccceeEecC-CCcee
Confidence 8888888776 899999999999999 5599999999998843 2333579999999999999 66799
Q ss_pred EEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEE
Q 014125 239 AIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILF 318 (430)
Q Consensus 239 ~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~ 318 (430)
++|+.|..-+|||+++++++..+.+|..+|.+++|+|+|..|++|+ .|++++|||++.... ++...+|.+-|+.+
T Consensus 319 ~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs-~Dnt~kVWDLR~r~~----ly~ipAH~nlVS~V 393 (459)
T KOG0272|consen 319 ATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGS-SDNTCKVWDLRMRSE----LYTIPAHSNLVSQV 393 (459)
T ss_pred eccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecC-CCCcEEEeeeccccc----ceecccccchhhhe
Confidence 9999999999999999999999999999999999999999999999 999999999998754 34447999999999
Q ss_pred EEcC-CCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeecC
Q 014125 319 DIEP-SGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDD 382 (430)
Q Consensus 319 ~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~ 382 (430)
.|+| .|.+|++++.|++++||...++.+++++.+|.+.|.++..+|++.++++++.|+++++|.
T Consensus 394 k~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 394 KYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred EecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 9999 689999999999999999999999999999999999999999999999999877777774
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-48 Score=303.78 Aligned_cols=291 Identities=15% Similarity=0.212 Sum_probs=254.3
Q ss_pred cceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccc
Q 014125 51 NQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH 130 (430)
Q Consensus 51 ~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 130 (430)
+..++++||.+.|.++.|++|.++|+++|.||.+.|||.-+......++. ....|...+|
T Consensus 46 ~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl-----------------~s~WVMtCA~--- 105 (343)
T KOG0286|consen 46 RTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPL-----------------PSSWVMTCAY--- 105 (343)
T ss_pred eeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEec-----------------CceeEEEEEE---
Confidence 45589999999999999999999999999999999999876543322222 2257888888
Q ss_pred cCccCCCCceEEEEeCCCcEEEEeccCC------ceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCC
Q 014125 131 MSASDPTSCVFASTTRDHPIHLWDATTG------LLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRP 204 (430)
Q Consensus 131 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~ 204 (430)
+|.|+.+|.|+-|+...||++.+. ...+.+..|.. .+.++.|-+|+.+|.++.|.+..+||++++
T Consensus 106 ----sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtg-----ylScC~f~dD~~ilT~SGD~TCalWDie~g 176 (343)
T KOG0286|consen 106 ----SPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTG-----YLSCCRFLDDNHILTGSGDMTCALWDIETG 176 (343)
T ss_pred ----CCCCCeEEecCcCceeEEEecccccccccceeeeeecCccc-----eeEEEEEcCCCceEecCCCceEEEEEcccc
Confidence 778999999999999999999855 23444555554 899999999888777889999999999884
Q ss_pred CCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEe
Q 014125 205 GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGG 284 (430)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 284 (430)
.....+.+|.+.|.+++++|.+.+.+++|+.|+..++||++.+..++.|.+|+..|++++|.|+|.-+++++
T Consensus 177 --------~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGS 248 (343)
T KOG0286|consen 177 --------QQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGS 248 (343)
T ss_pred --------eEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecC
Confidence 333345799999999999998889999999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcC
Q 014125 285 RKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHP 364 (430)
Q Consensus 285 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 364 (430)
.|++.++||+|...+.. .+.......+|++++||..|++|++|..|..+.+||.-.++.+..+.+|...|+++..+|
T Consensus 249 -DD~tcRlyDlRaD~~~a--~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~ 325 (343)
T KOG0286|consen 249 -DDATCRLYDLRADQELA--VYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSP 325 (343)
T ss_pred -CCceeEEEeecCCcEEe--eeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECC
Confidence 99999999999986553 334456677899999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeeCCceeeec
Q 014125 365 FLPMAASSSGHRRFPVD 381 (430)
Q Consensus 365 ~~~~l~s~~~d~~~~vw 381 (430)
||..++||++|..++||
T Consensus 326 DG~av~TgSWDs~lriW 342 (343)
T KOG0286|consen 326 DGMAVATGSWDSTLRIW 342 (343)
T ss_pred CCcEEEecchhHheeec
Confidence 99999999987777777
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=269.82 Aligned_cols=291 Identities=18% Similarity=0.272 Sum_probs=240.2
Q ss_pred eeecccCCCceeEEEECcC-CceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecccc
Q 014125 53 FRTSSIPNNFLKGIKWSPD-GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (430)
Q Consensus 53 ~~~~~~h~~~v~~~~~sp~-~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (430)
..++.+|++.|+.++..+. .+.|++++.|.++.+|++...... -+.......+|.+.|..+..
T Consensus 8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~------------~G~~~r~~~GHsH~v~dv~~---- 71 (315)
T KOG0279|consen 8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIK------------YGVPVRRLTGHSHFVSDVVL---- 71 (315)
T ss_pred eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccc------------cCceeeeeeccceEecceEE----
Confidence 3578999999999999986 568899999999999999765211 12334455668899999988
Q ss_pred CccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccc
Q 014125 132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEK 210 (430)
Q Consensus 132 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~ 210 (430)
+++|++.++++.|+++++||+.+++..+.|.+|.. .|.+++|++|++.|++| .|++|++|++-...
T Consensus 72 ---s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~-----dVlsva~s~dn~qivSGSrDkTiklwnt~g~c----- 138 (315)
T KOG0279|consen 72 ---SSDGNFALSASWDGTLRLWDLATGESTRRFVGHTK-----DVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVC----- 138 (315)
T ss_pred ---ccCCceEEeccccceEEEEEecCCcEEEEEEecCC-----ceEEEEecCCCceeecCCCcceeeeeeecccE-----
Confidence 88999999999999999999999999999998876 99999999999999965 99999999986531
Q ss_pred cccccCCCCCCCcceEEEEEcCCC-CceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCe
Q 014125 211 YSTLKGNKEGQAGIMSAIAFSPTH-TGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPY 289 (430)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~ 289 (430)
........+...|+|+.|+|.. ..+|++++.|++|++||+++.+....+.+|.+.++.+++||||..+++|+ .||.
T Consensus 139 --k~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGg-kdg~ 215 (315)
T KOG0279|consen 139 --KYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGG-KDGE 215 (315)
T ss_pred --EEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCC-CCce
Confidence 1111223337899999999964 77999999999999999999999999999999999999999999999999 9999
Q ss_pred EEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccccc----c-----cCCeeEE
Q 014125 290 ILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQA----A-----ADTVNGF 360 (430)
Q Consensus 290 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~----~-----~~~v~~~ 360 (430)
+.+||++.++.. +. ..+...|.+++|+|+...|+.+. +..|+|||+.++..+..++. . .....++
T Consensus 216 ~~LwdL~~~k~l-ys----l~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clsl 289 (315)
T KOG0279|consen 216 AMLWDLNEGKNL-YS----LEAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSL 289 (315)
T ss_pred EEEEEccCCcee-Ee----ccCCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEE
Confidence 999999998653 22 36788999999999866666554 45699999999988776652 1 1235678
Q ss_pred EEcCCCcEEEEeeCCceeeec
Q 014125 361 SFHPFLPMAASSSGHRRFPVD 381 (430)
Q Consensus 361 ~~~~~~~~l~s~~~d~~~~vw 381 (430)
+|+++|..|+++-.|+.|++|
T Consensus 290 aws~dG~tLf~g~td~~irv~ 310 (315)
T KOG0279|consen 290 AWSADGQTLFAGYTDNVIRVW 310 (315)
T ss_pred EEcCCCcEEEeeecCCcEEEE
Confidence 999999999999865444444
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-44 Score=296.12 Aligned_cols=242 Identities=21% Similarity=0.338 Sum_probs=219.1
Q ss_pred eecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCC--CcEEE-EE
Q 014125 115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT--GTKIF-AG 191 (430)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~-~~ 191 (430)
.++...+|..+.| +.++..|+||+.+|.+++|...+...++.+.+|.. .+.++.|+|. +..++ ++
T Consensus 171 Q~gd~rPis~~~f-------S~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~-----~v~~~~fhP~~~~~~lat~s 238 (459)
T KOG0272|consen 171 QVGDTRPISGCSF-------SRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTS-----RVGAAVFHPVDSDLNLATAS 238 (459)
T ss_pred hccCCCcceeeEe-------ecCCCeEEEeecCCceeEeecCCcceeEEEecccc-----ceeeEEEccCCCccceeeec
Confidence 4456678888888 78999999999999999999999999999998887 8999999998 45666 56
Q ss_pred cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEE
Q 014125 192 YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHV 271 (430)
Q Consensus 192 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~ 271 (430)
.||++++|+++.. .+...+.+|...|..++|+| ++.+|++++.|.+-++||++++..+....+|...|.++
T Consensus 239 ~Dgtvklw~~~~e--------~~l~~l~gH~~RVs~VafHP-sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~i 309 (459)
T KOG0272|consen 239 ADGTVKLWKLSQE--------TPLQDLEGHLARVSRVAFHP-SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSI 309 (459)
T ss_pred cCCceeeeccCCC--------cchhhhhcchhhheeeeecC-CCceeeecccccchhhcccccchhhHhhccccccccee
Confidence 9999999999873 44455689999999999999 78899999999999999999999888889999999999
Q ss_pred EEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccc
Q 014125 272 QFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQ 351 (430)
Q Consensus 272 ~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 351 (430)
+|.|||..+++|| .|..-+|||++++.+.... .+|...|.+++|+|+|..||||+.|++++|||++..+.++++.
T Consensus 310 af~~DGSL~~tGG-lD~~~RvWDlRtgr~im~L----~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ip 384 (459)
T KOG0272|consen 310 AFQPDGSLAATGG-LDSLGRVWDLRTGRCIMFL----AGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIP 384 (459)
T ss_pred EecCCCceeeccC-ccchhheeecccCcEEEEe----cccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecc
Confidence 9999999999999 9999999999999766533 5799999999999999999999999999999999999999999
Q ss_pred cccCCeeEEEEcC-CCcEEEEeeCCceeeecC
Q 014125 352 AAADTVNGFSFHP-FLPMAASSSGHRRFPVDD 382 (430)
Q Consensus 352 ~~~~~v~~~~~~~-~~~~l~s~~~d~~~~vw~ 382 (430)
+|.+-|+.+.|+| .|.+|+|++.|+++++|.
T Consensus 385 AH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs 416 (459)
T KOG0272|consen 385 AHSNLVSQVKYSPQEGYFLVTASYDNTVKIWS 416 (459)
T ss_pred cccchhhheEecccCCeEEEEcccCcceeeec
Confidence 9999999999999 788999999887777773
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-41 Score=263.74 Aligned_cols=292 Identities=18% Similarity=0.310 Sum_probs=244.7
Q ss_pred ecceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecc
Q 014125 50 YNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFP 129 (430)
Q Consensus 50 ~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 129 (430)
......+.+|.+.|+.+.|+|+|.+|||||.|..|.+|++.... ........|.+.|..+.|
T Consensus 37 ~ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc----------------eN~~~lkgHsgAVM~l~~-- 98 (338)
T KOG0265|consen 37 QAPIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC----------------ENFWVLKGHSGAVMELHG-- 98 (338)
T ss_pred cchhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc----------------cceeeeccccceeEeeee--
Confidence 34566889999999999999999999999999999999975321 112233478899999999
Q ss_pred ccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-E-cCCeEEEEEcCCCCCc
Q 014125 130 HMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-G-YNKSVRVFDVHRPGRD 207 (430)
Q Consensus 130 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~-~d~~i~v~d~~~~~~~ 207 (430)
.+|++.+++++.|.+++.||.++|+.+..++.|.. -+.++.-+.-|..+++ + .|+++++||++.....
T Consensus 99 -----~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~-----~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~ 168 (338)
T KOG0265|consen 99 -----MRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTS-----FVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAI 168 (338)
T ss_pred -----ccCCCEEEEecCCceEEEEecccceeeehhccccc-----eeeecCccccCCeEEEecCCCceEEEEeecccchh
Confidence 77999999999999999999999999999998876 7777776666777774 3 8999999999864221
Q ss_pred ccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCC
Q 014125 208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKD 287 (430)
Q Consensus 208 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d 287 (430)
.. ......++++.|.. ....+.+|+-|+.|++||++.......+.+|..+|+.+..+|+|.++++-+ +|
T Consensus 169 ----~t-----~~~kyqltAv~f~d-~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsns-Md 237 (338)
T KOG0265|consen 169 ----KT-----FENKYQLTAVGFKD-TSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNS-MD 237 (338)
T ss_pred ----hc-----cccceeEEEEEecc-cccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCcccccc-cc
Confidence 11 22345689999998 666889999999999999999999999999999999999999999999999 99
Q ss_pred CeEEEEeCCCCceEE--EEeecccCC--ccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEc
Q 014125 288 PYILCWDLRKAVQVV--YKLYRSSEH--TNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFH 363 (430)
Q Consensus 288 ~~i~i~d~~~~~~~~--~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~ 363 (430)
.++++||++..-... ..++....| ......++|+|+++.+.+|+.|..+++||......++.+.+|.+.|.++.|+
T Consensus 238 ~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fh 317 (338)
T KOG0265|consen 238 NTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFH 317 (338)
T ss_pred ceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeec
Confidence 999999998642211 122222222 3345678999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEeeCCceeee
Q 014125 364 PFLPMAASSSGHRRFPV 380 (430)
Q Consensus 364 ~~~~~l~s~~~d~~~~v 380 (430)
|..++|.+++.|+++.+
T Consensus 318 p~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 318 PTEPIILSCSSDKTIYL 334 (338)
T ss_pred CCCcEEEEeccCceeEe
Confidence 99999999998887765
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=278.70 Aligned_cols=317 Identities=18% Similarity=0.284 Sum_probs=255.7
Q ss_pred eecceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeec
Q 014125 49 FYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWF 128 (430)
Q Consensus 49 ~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 128 (430)
||+.-.++..|...|.|++|+|||.++||++.||+|.+||=.++..+..+.. ...|.+.|++++|
T Consensus 179 PFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~--------------~~aHkGsIfalsW- 243 (603)
T KOG0318|consen 179 PFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELED--------------SDAHKGSIFALSW- 243 (603)
T ss_pred CeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecC--------------CCCccccEEEEEE-
Confidence 3444457888999999999999999999999999999999888765544332 2357789999999
Q ss_pred cccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcc
Q 014125 129 PHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDF 208 (430)
Q Consensus 129 ~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~ 208 (430)
+||+..|++++.|.+++|||+.+.++++++......+. .-..+.|. .+.++..+.+|.|.+++...+.
T Consensus 244 ------sPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~d--qqvG~lWq-kd~lItVSl~G~in~ln~~d~~--- 311 (603)
T KOG0318|consen 244 ------SPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVED--QQVGCLWQ-KDHLITVSLSGTINYLNPSDPS--- 311 (603)
T ss_pred ------CCCCceEEEecCCceEEEEEeeccceEEEeecCCchhc--eEEEEEEe-CCeEEEEEcCcEEEEecccCCC---
Confidence 78999999999999999999999999999887654222 33456665 5556668899999999988743
Q ss_pred cccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceee-----------EEee---------------
Q 014125 209 EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELL-----------YVLH--------------- 262 (430)
Q Consensus 209 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~-----------~~~~--------------- 262 (430)
......+|...|+++..+| ++..|++|+.||.|.-|+..++..- ..+.
T Consensus 312 -----~~~~i~GHnK~ITaLtv~~-d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~ 385 (603)
T KOG0318|consen 312 -----VLKVISGHNKSITALTVSP-DGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDT 385 (603)
T ss_pred -----hhheecccccceeEEEEcC-CCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCe
Confidence 3344589999999999999 5589999999999999997654211 0000
Q ss_pred -----------------------------------------------cc--------ccCeEEEEEccCCCEEEEEecCC
Q 014125 263 -----------------------------------------------GQ--------EGGVTHVQFSRDGNYLYTGGRKD 287 (430)
Q Consensus 263 -----------------------------------------------~~--------~~~i~~~~~~~~~~~l~~~~~~d 287 (430)
.+ .-...+++++|++..+++|+ .|
T Consensus 386 l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG-~D 464 (603)
T KOG0318|consen 386 LRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGG-QD 464 (603)
T ss_pred EEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEec-cc
Confidence 00 01235688999999999999 99
Q ss_pred CeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCee-cccccccCCeeEEEEcCCC
Q 014125 288 PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWI-SGFQAAADTVNGFSFHPFL 366 (430)
Q Consensus 288 ~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-~~~~~~~~~v~~~~~~~~~ 366 (430)
+.|++|.+....... ......|..+|+++++|||+.|||++...+.+.+||+.+.+.. ..+..|...|.+++|+|+.
T Consensus 465 gkvhvysl~g~~l~e--e~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n 542 (603)
T KOG0318|consen 465 GKVHVYSLSGDELKE--EAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNN 542 (603)
T ss_pred ceEEEEEecCCcccc--eeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCc
Confidence 999999998754321 1222579999999999999999999999999999999988763 2345699999999999999
Q ss_pred cEEEEeeCCceeeecC-------------------------CCccccccCCCcEEEEeec
Q 014125 367 PMAASSSGHRRFPVDD-------------------------FEDLHLSGDENCVSVWSFL 401 (430)
Q Consensus 367 ~~l~s~~~d~~~~vw~-------------------------~~~l~~~~~d~~i~~w~~~ 401 (430)
.++|||+-|..|.||+ ...++++|.|.+|++|++.
T Consensus 543 ~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 543 KLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred eEEEeccccceEEEEEccChhhheEeccccccCceeEEEecCceEEeccCcceeEEeccc
Confidence 9999999999999993 3449999999999999875
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=291.22 Aligned_cols=341 Identities=20% Similarity=0.304 Sum_probs=266.6
Q ss_pred cCCCCCc--ceeeecceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeee
Q 014125 39 FDVPPHR--TYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVV 116 (430)
Q Consensus 39 ~~~~~~~--~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (430)
|..|... .+.||.+.+++.||.+.|+++.|+.|.++|++||.|-+++||.++..+ ........
T Consensus 122 w~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k---------------~~~~~~l~ 186 (893)
T KOG0291|consen 122 WHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNK---------------NLFTYALN 186 (893)
T ss_pred EecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEecccc---------------ccceEecc
Confidence 4444443 488999999999999999999999999999999999999999998543 22334455
Q ss_pred cCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccC-----------------------Cce-----ee-eeecc
Q 014125 117 TEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATT-----------------------GLL-----RC-TYRAY 167 (430)
Q Consensus 117 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-----------------------~~~-----~~-~~~~~ 167 (430)
+|...|-+.-| ..+...+++.+.||.+.+|.... ++. .. ..+.+
T Consensus 187 gHkd~VvacfF-------~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~ 259 (893)
T KOG0291|consen 187 GHKDYVVACFF-------GANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKH 259 (893)
T ss_pred CCCcceEEEEe-------ccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEee
Confidence 67777777777 55677788899999999987651 000 00 00000
Q ss_pred ccccc------------------------------------------ccceEEEEECCCCcEEEEE--cCCeEEEEEcCC
Q 014125 168 DAVDE------------------------------------------ITAAFSVAFNPTGTKIFAG--YNKSVRVFDVHR 203 (430)
Q Consensus 168 ~~~~~------------------------------------------~~~v~~~~~~~~~~~l~~~--~d~~i~v~d~~~ 203 (430)
--... ..+|..++|+..|.+|+.| .-|.+-||+...
T Consensus 260 ~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqs 339 (893)
T KOG0291|consen 260 YLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQS 339 (893)
T ss_pred eecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeec
Confidence 00000 1234455555556666633 334666666654
Q ss_pred CCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEE
Q 014125 204 PGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTG 283 (430)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 283 (430)
. ......++|...+++++++| ++.++|+|+.||.|++||..++-+..++..|...|+.+.|+..|+.++++
T Consensus 340 E--------sYVlKQQgH~~~i~~l~YSp-Dgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llss 410 (893)
T KOG0291|consen 340 E--------SYVLKQQGHSDRITSLAYSP-DGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSS 410 (893)
T ss_pred c--------ceeeeccccccceeeEEECC-CCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEe
Confidence 2 22334578999999999999 67799999999999999999999999999999999999999999999999
Q ss_pred ecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCc-EEEEEcCCCCeecccccccCCeeEEEE
Q 014125 284 GRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGL-VHIYDLQTGKWISGFQAAADTVNGFSF 362 (430)
Q Consensus 284 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~~v~~~~~ 362 (430)
+ -||+|+.||+......... . ........+++..|.|..+++|+.|.- |+||++.+|+++-.+.+|+++|.+++|
T Consensus 411 S-LDGtVRAwDlkRYrNfRTf--t-~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f 486 (893)
T KOG0291|consen 411 S-LDGTVRAWDLKRYRNFRTF--T-SPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSF 486 (893)
T ss_pred e-cCCeEEeeeecccceeeee--c-CCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEE
Confidence 9 9999999999876543222 1 234456678999999999999998864 999999999999999999999999999
Q ss_pred cCCCcEEEEeeCCceeeecC-------------------------CCccccccCCCcEEEEeecccccccccCCCCc
Q 014125 363 HPFLPMAASSSGHRRFPVDD-------------------------FEDLHLSGDENCVSVWSFLYASMMENADGING 414 (430)
Q Consensus 363 ~~~~~~l~s~~~d~~~~vw~-------------------------~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~ 414 (430)
+|.+..|+++|+|.+|++|+ ...++++.-||.|.+||...+..+..++|..+
T Consensus 487 ~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD 563 (893)
T KOG0291|consen 487 SPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKD 563 (893)
T ss_pred ccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhh
Confidence 99999999999999999993 34488888999999999999888877776543
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=254.53 Aligned_cols=284 Identities=14% Similarity=0.204 Sum_probs=236.9
Q ss_pred ceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEE
Q 014125 73 SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHL 152 (430)
Q Consensus 73 ~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~v 152 (430)
-+|+|+|.|.+||+|...++.+...+.. ..+.|..+.. .|+++.||+++... |++
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh-----------------~dsqVNrLei-------Tpdk~~LAaa~~qh-vRl 65 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQH-----------------PDSQVNRLEI-------TPDKKDLAAAGNQH-VRL 65 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEec-----------------CccceeeEEE-------cCCcchhhhccCCe-eEE
Confidence 4899999999999999988865433332 3367888887 77899999887654 999
Q ss_pred EeccCCc--eeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEE
Q 014125 153 WDATTGL--LRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIA 229 (430)
Q Consensus 153 wd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 229 (430)
||+.++. ++..+..+.. .|.++.|..+|+.+++| .||+++|||++... .. ....+..+|+++.
T Consensus 66 yD~~S~np~Pv~t~e~h~k-----NVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~--------~q-R~~~~~spVn~vv 131 (311)
T KOG0315|consen 66 YDLNSNNPNPVATFEGHTK-----NVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLS--------CQ-RNYQHNSPVNTVV 131 (311)
T ss_pred EEccCCCCCceeEEeccCC-----ceEEEEEeecCeEEEecCCCceEEEEeccCcc--------cc-hhccCCCCcceEE
Confidence 9999875 4667777655 89999999999999965 99999999998732 11 1245568999999
Q ss_pred EcCCCCceEEEecCCCeEEEEEcCCceeeEEeec-cccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCc--eEEEEee
Q 014125 230 FSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG-QEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAV--QVVYKLY 306 (430)
Q Consensus 230 ~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~--~~~~~~~ 306 (430)
.+| +...|++|..+|.|++||+.+..+...+.. ...+|.++...|||.+++++. ..|..++|++-+.. ....++.
T Consensus 132 lhp-nQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~n-nkG~cyvW~l~~~~~~s~l~P~~ 209 (311)
T KOG0315|consen 132 LHP-NQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAAN-NKGNCYVWRLLNHQTASELEPVH 209 (311)
T ss_pred ecC-CcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEec-CCccEEEEEccCCCccccceEhh
Confidence 999 788999999999999999998766555443 345899999999999999998 89999999987642 2333445
Q ss_pred cccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCC-CeecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCCCc
Q 014125 307 RSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTG-KWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFED 385 (430)
Q Consensus 307 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~ 385 (430)
+...|...+..+.+||++++||+++.|.+++||+.++. +....+.+|...+...+|+.+|.+|+|++
T Consensus 210 k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTas------------ 277 (311)
T KOG0315|consen 210 KFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTAS------------ 277 (311)
T ss_pred heecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecC------------
Confidence 56789999999999999999999999999999999987 66778899999999999999999999998
Q ss_pred cccccCCCcEEEEeecccccccccCCCCc
Q 014125 386 LHLSGDENCVSVWSFLYASMMENADGING 414 (430)
Q Consensus 386 l~~~~~d~~i~~w~~~~~~~~~~~~~~~~ 414 (430)
.|+.+|+|+++.++.+....||..
T Consensus 278 -----sd~~~rlW~~~~~k~v~qy~gh~K 301 (311)
T KOG0315|consen 278 -----SDHTARLWDLSAGKEVRQYQGHHK 301 (311)
T ss_pred -----CCCceeecccccCceeeecCCccc
Confidence 578899999999998888888876
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=287.99 Aligned_cols=303 Identities=19% Similarity=0.310 Sum_probs=250.6
Q ss_pred CCCCCcceeeecceeecccCCCceeEEEECc-CCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecC
Q 014125 40 DVPPHRTYHFYNQFRTSSIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTE 118 (430)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (430)
+.++.+.+-|-+..+++.||+..|+++.|.| .+.+|++++.|+.|+||++... ........+|
T Consensus 194 nlR~~rc~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~----------------~~~lrtf~gH 257 (503)
T KOG0282|consen 194 NLREERCYLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDD----------------RRCLRTFKGH 257 (503)
T ss_pred ccccceeeccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecC----------------cceehhhhcc
Confidence 3345677778889999999999999999999 8999999999999999998752 2233455677
Q ss_pred CCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCC-cEEEEE-cCCeE
Q 014125 119 GESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG-TKIFAG-YNKSV 196 (430)
Q Consensus 119 ~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~-~d~~i 196 (430)
..+|.+++| +++|..|++++.|+.+++||+++|+++..+.... .+.++.|+|++ ..+++| .|+.|
T Consensus 258 ~k~Vrd~~~-------s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~------~~~cvkf~pd~~n~fl~G~sd~ki 324 (503)
T KOG0282|consen 258 RKPVRDASF-------NNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDK------VPTCVKFHPDNQNIFLVGGSDKKI 324 (503)
T ss_pred hhhhhhhhc-------cccCCeeeeeecceeeeeeccccceEEEEEecCC------CceeeecCCCCCcEEEEecCCCcE
Confidence 799999999 7899999999999999999999999999887655 78899999999 444454 99999
Q ss_pred EEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEee-ccccCeEEEEEcc
Q 014125 197 RVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH-GQEGGVTHVQFSR 275 (430)
Q Consensus 197 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~-~~~~~i~~~~~~~ 275 (430)
+.||++.+ .+......|-+.|..+.|-+ ++..+++.+.|+++++|+.+..-.+..+. .+.....++..+|
T Consensus 325 ~~wDiRs~--------kvvqeYd~hLg~i~~i~F~~-~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P 395 (503)
T KOG0282|consen 325 RQWDIRSG--------KVVQEYDRHLGAILDITFVD-EGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHP 395 (503)
T ss_pred EEEeccch--------HHHHHHHhhhhheeeeEEcc-CCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCC
Confidence 99999984 34444567788899999999 77899999999999999998876654433 2334677899999
Q ss_pred CCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCC--ccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccc
Q 014125 276 DGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEH--TNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAA 353 (430)
Q Consensus 276 ~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 353 (430)
+++++++-+ .|+.|.+|.+....+.. +...+.+| .+.-..+.|||||++|++|+.||.+.+||.++-+++..+++|
T Consensus 396 ~~~~~~aQs-~dN~i~ifs~~~~~r~n-kkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah 473 (503)
T KOG0282|consen 396 NGKWFAAQS-MDNYIAIFSTVPPFRLN-KKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAH 473 (503)
T ss_pred CCCeehhhc-cCceEEEEecccccccC-HhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccC
Confidence 999999999 99999999976543221 11222344 455677999999999999999999999999999999999999
Q ss_pred cCCeeEEEEcCCCc-EEEEeeCCceeeecC
Q 014125 354 ADTVNGFSFHPFLP-MAASSSGHRRFPVDD 382 (430)
Q Consensus 354 ~~~v~~~~~~~~~~-~l~s~~~d~~~~vw~ 382 (430)
.+++..+.|+|... .+|||+.||.|++|+
T Consensus 474 ~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 474 DQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred CcceEEEEecCCCcceeEecccCceeEecC
Confidence 99999999999765 788888777666664
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=276.98 Aligned_cols=277 Identities=21% Similarity=0.334 Sum_probs=242.3
Q ss_pred CceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCce
Q 014125 61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV 140 (430)
Q Consensus 61 ~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (430)
..|++++|+.+|.+||+|+.||.++||+..... ......|.++|.++.| +..|.+
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l------------------~~tl~~HkgPI~slKW-------nk~G~y 290 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGNL------------------ISTLGQHKGPIFSLKW-------NKKGTY 290 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecCchh------------------hhhhhccCCceEEEEE-------cCCCCE
Confidence 579999999999999999999999999987442 2244457789999999 778999
Q ss_pred EEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccCCCCC
Q 014125 141 FASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEG 220 (430)
Q Consensus 141 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~ 220 (430)
|++++.|+++.+||..++...+.+..+.. +...+.|-.+..+..++.|+.|+|+.+... .+...+.+
T Consensus 291 ilS~~vD~ttilwd~~~g~~~q~f~~~s~-----~~lDVdW~~~~~F~ts~td~~i~V~kv~~~--------~P~~t~~G 357 (524)
T KOG0273|consen 291 ILSGGVDGTTILWDAHTGTVKQQFEFHSA-----PALDVDWQSNDEFATSSTDGCIHVCKVGED--------RPVKTFIG 357 (524)
T ss_pred EEeccCCccEEEEeccCceEEEeeeeccC-----CccceEEecCceEeecCCCceEEEEEecCC--------Ccceeeec
Confidence 99999999999999999999999988875 556789988877777889999999999763 34444578
Q ss_pred CCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCC---------EEEEEecCCCeEE
Q 014125 221 QAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGN---------YLYTGGRKDPYIL 291 (430)
Q Consensus 221 ~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~---------~l~~~~~~d~~i~ 291 (430)
|.+.|.++.|+| .+.+|++++.|++++||++........+.+|...|..+.|+|.|. .+++++ .|++|+
T Consensus 358 H~g~V~alk~n~-tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas-~dstV~ 435 (524)
T KOG0273|consen 358 HHGEVNALKWNP-TGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASAS-FDSTVK 435 (524)
T ss_pred ccCceEEEEECC-CCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEee-cCCeEE
Confidence 999999999999 778999999999999999999999999999999999999999753 678888 999999
Q ss_pred EEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEE
Q 014125 292 CWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAAS 371 (430)
Q Consensus 292 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 371 (430)
+||+..+.+.. ....|..+|.+++|+|+|+|+|+|+.||.|.+|+..+++.++.+.+ .+.|..++|+.+|.+|..
T Consensus 436 lwdv~~gv~i~----~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~~G~kl~~ 510 (524)
T KOG0273|consen 436 LWDVESGVPIH----TLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG-TGGIFELCWNAAGDKLGA 510 (524)
T ss_pred EEEccCCceeE----eeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC-CCeEEEEEEcCCCCEEEE
Confidence 99999885443 2368999999999999999999999999999999999999998884 457999999999999999
Q ss_pred eeCCceeeecC
Q 014125 372 SSGHRRFPVDD 382 (430)
Q Consensus 372 ~~~d~~~~vw~ 382 (430)
+-.|+.+++-|
T Consensus 511 ~~sd~~vcvld 521 (524)
T KOG0273|consen 511 CASDGSVCVLD 521 (524)
T ss_pred EecCCCceEEE
Confidence 98777666644
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-40 Score=253.28 Aligned_cols=288 Identities=19% Similarity=0.295 Sum_probs=232.4
Q ss_pred ceeecccCCCceeEEEECcC-CceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccc
Q 014125 52 QFRTSSIPNNFLKGIKWSPD-GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH 130 (430)
Q Consensus 52 ~~~~~~~h~~~v~~~~~sp~-~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 130 (430)
.++.+.+|.+.|..++|+|- |..|||||.|+.|+||+...+.. -.....+.-.|...|+.++|
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s-------------~~ck~vld~~hkrsVRsvAw--- 69 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDS-------------WTCKTVLDDGHKRSVRSVAW--- 69 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCc-------------EEEEEeccccchheeeeeee---
Confidence 45688999999999999997 88999999999999999874211 01112233457889999999
Q ss_pred cCccCCCCceEEEEeCCCcEEEEeccCC--ceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCc
Q 014125 131 MSASDPTSCVFASTTRDHPIHLWDATTG--LLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRD 207 (430)
Q Consensus 131 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~ 207 (430)
+|.|++|++++.|.++.||.-..+ +++..+.+|.. +|.+++|+++|.+|+ ++.|+.|.||.+...+.
T Consensus 70 ----sp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEn-----EVK~Vaws~sG~~LATCSRDKSVWiWe~deddE- 139 (312)
T KOG0645|consen 70 ----SPHGRYLASASFDATVVIWKKEDGEFECVATLEGHEN-----EVKCVAWSASGNYLATCSRDKSVWIWEIDEDDE- 139 (312)
T ss_pred ----cCCCcEEEEeeccceEEEeecCCCceeEEeeeecccc-----ceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCc-
Confidence 778999999999999999997765 45666777665 999999999999999 66999999999985332
Q ss_pred ccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcC---CceeeEEeeccccCeEEEEEccCCCEEEEEe
Q 014125 208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED---NMELLYVLHGQEGGVTHVQFSRDGNYLYTGG 284 (430)
Q Consensus 208 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~---~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 284 (430)
+ .....+.+|...|..+.|+| ...+|++++.|.+|++|+-. ...++.++.+|...|.+++|+|.|..|++++
T Consensus 140 f----ec~aVL~~HtqDVK~V~WHP-t~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~s 214 (312)
T KOG0645|consen 140 F----ECIAVLQEHTQDVKHVIWHP-TEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCS 214 (312)
T ss_pred E----EEEeeeccccccccEEEEcC-CcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEec
Confidence 2 33344578889999999999 77799999999999999766 3468899999999999999999999999999
Q ss_pred cCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCC--Ce----e-cccccccCCe
Q 014125 285 RKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTG--KW----I-SGFQAAADTV 357 (430)
Q Consensus 285 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~--~~----~-~~~~~~~~~v 357 (430)
.|++++||.....- ...|...+..+.|. ...|++++.|+.|++|.-... .+ + ..-..|...|
T Consensus 215 -dD~tv~Iw~~~~~~--------~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dV 283 (312)
T KOG0645|consen 215 -DDGTVSIWRLYTDL--------SGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDV 283 (312)
T ss_pred -CCcceEeeeeccCc--------chhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhccccccc
Confidence 99999999876431 14577889999998 458999999999999987642 11 1 1334688899
Q ss_pred eEEEEcCC-CcEEEEeeCCceeeec
Q 014125 358 NGFSFHPF-LPMAASSSGHRRFPVD 381 (430)
Q Consensus 358 ~~~~~~~~-~~~l~s~~~d~~~~vw 381 (430)
++++|.|. .+.|++++.||.+++|
T Consensus 284 NsV~w~p~~~~~L~s~~DDG~v~~W 308 (312)
T KOG0645|consen 284 NSVQWNPKVSNRLASGGDDGIVNFW 308 (312)
T ss_pred ceEEEcCCCCCceeecCCCceEEEE
Confidence 99999995 5677777755444444
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-41 Score=268.73 Aligned_cols=300 Identities=15% Similarity=0.243 Sum_probs=254.1
Q ss_pred CCCCcceeeecceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCC
Q 014125 41 VPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGE 120 (430)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (430)
.+.+....+++..+++.+|.+.|.|+++.|...+|+||+.|++|+|||+.++++...+..+ -.
T Consensus 132 ~~rPeWHapwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGh-----------------i~ 194 (460)
T KOG0285|consen 132 MPRPEWHAPWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGH-----------------IE 194 (460)
T ss_pred CCCccccCcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecch-----------------hh
Confidence 3556677788999999999999999999999999999999999999999999876555544 37
Q ss_pred eeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEE
Q 014125 121 SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVF 199 (430)
Q Consensus 121 ~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~ 199 (430)
.|..+++ |+-..++++++.|+.|+.||++..+.++.+-+|-. .|.+++.+|.-..|+ +|.|.++++|
T Consensus 195 ~vr~vav-------S~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS-----~V~~L~lhPTldvl~t~grDst~RvW 262 (460)
T KOG0285|consen 195 TVRGVAV-------SKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLS-----GVYCLDLHPTLDVLVTGGRDSTIRVW 262 (460)
T ss_pred eeeeeee-------cccCceEEEecCCCeeEEEechhhhhHHHhccccc-----eeEEEeccccceeEEecCCcceEEEe
Confidence 8999999 44566999999999999999999999988877665 999999999999998 5599999999
Q ss_pred EcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCE
Q 014125 200 DVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNY 279 (430)
Q Consensus 200 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 279 (430)
|+++.. ....+.+|..+|..+.+.| -...+++|+.|++|++||++.++....+..|...+.+++.+|....
T Consensus 263 DiRtr~--------~V~~l~GH~~~V~~V~~~~-~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~ 333 (460)
T KOG0285|consen 263 DIRTRA--------SVHVLSGHTNPVASVMCQP-TDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENL 333 (460)
T ss_pred eecccc--------eEEEecCCCCcceeEEeec-CCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhh
Confidence 999842 2233579999999999998 4558999999999999999999999999999999999999999988
Q ss_pred EEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccccc-------
Q 014125 280 LYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQA------- 352 (430)
Q Consensus 280 l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~------- 352 (430)
+++++ -..|+.|++..+.... ...+|...+++++...|| ++++|+++|.+.+||.++|-..+.++.
T Consensus 334 fASas--~dnik~w~~p~g~f~~----nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl 406 (460)
T KOG0285|consen 334 FASAS--PDNIKQWKLPEGEFLQ----NLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSL 406 (460)
T ss_pred hhccC--CccceeccCCccchhh----ccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCcc
Confidence 88877 4569999998775332 236888999999988775 788999999999999999866554421
Q ss_pred -ccCCeeEEEEcCCCcEEEEeeCCceeeecCCCc
Q 014125 353 -AADTVNGFSFHPFLPMAASSSGHRRFPVDDFED 385 (430)
Q Consensus 353 -~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~ 385 (430)
.+..|.+.+|...|..|++|..|.+|++|..+.
T Consensus 407 ~sEagI~as~fDktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 407 ESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred ccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence 234689999999999999999887777775544
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-42 Score=278.76 Aligned_cols=281 Identities=19% Similarity=0.352 Sum_probs=238.7
Q ss_pred CCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCc
Q 014125 60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC 139 (430)
Q Consensus 60 ~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (430)
..+|..+.|.|+|+.|++|+..|.+.+|+..... ...+...|..+|+++.| ++++.
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fn-----------------FEtilQaHDs~Vr~m~w-------s~~g~ 151 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFN-----------------FETILQAHDSPVRTMKW-------SHNGT 151 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceee-----------------HHHHhhhhcccceeEEE-------ccCCC
Confidence 4579999999999999999999999999874321 12234567789999999 77899
Q ss_pred eEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCcccccccccCCC
Q 014125 140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNK 218 (430)
Q Consensus 140 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~ 218 (430)
.+++|+.+|.|++|+..-.........+.. .|.+++|+|....++ ++.||+|+|||...+. ....+
T Consensus 152 wmiSgD~gG~iKyWqpnmnnVk~~~ahh~e-----aIRdlafSpnDskF~t~SdDg~ikiWdf~~~k--------ee~vL 218 (464)
T KOG0284|consen 152 WMISGDKGGMIKYWQPNMNNVKIIQAHHAE-----AIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPK--------EERVL 218 (464)
T ss_pred EEEEcCCCceEEecccchhhhHHhhHhhhh-----hhheeccCCCCceeEEecCCCeEEEEeccCCc--------hhhee
Confidence 999999999999999866544333333323 899999999877666 6799999999998742 22334
Q ss_pred CCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCC
Q 014125 219 EGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKA 298 (430)
Q Consensus 219 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~ 298 (430)
.+|.-.|.+++|+| ...++++|+.|..|++||.+++.++.++.+|...|..+.|+|++++|++++ .|..+++||+++.
T Consensus 219 ~GHgwdVksvdWHP-~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~s-kD~~~kv~DiR~m 296 (464)
T KOG0284|consen 219 RGHGWDVKSVDWHP-TKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGS-KDQSCKVFDIRTM 296 (464)
T ss_pred ccCCCCcceeccCC-ccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEcc-CCceEEEEehhHh
Confidence 78999999999999 777999999999999999999999999999999999999999999999999 9999999999965
Q ss_pred ceEEEEeecccCCccceEEEEEcCC-CCEEEEEccCCcEEEEEcCCCCeeccc-ccccCCeeEEEEcCCCcEEEEeeCCc
Q 014125 299 VQVVYKLYRSSEHTNQRILFDIEPS-GRHLGTGGQDGLVHIYDLQTGKWISGF-QAAADTVNGFSFHPFLPMAASSSGHR 376 (430)
Q Consensus 299 ~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~d~ 376 (430)
+.+ +...+|...++++.|+|- ..+|.+|+.||.|..|.+...+++..+ .+|...|++++|+|-|.+|++|+.|.
T Consensus 297 kEl----~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~ 372 (464)
T KOG0284|consen 297 KEL----FTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDR 372 (464)
T ss_pred HHH----HHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCc
Confidence 433 445789999999999995 467899999999999999966666555 57999999999999999999999999
Q ss_pred eeeecCC
Q 014125 377 RFPVDDF 383 (430)
Q Consensus 377 ~~~vw~~ 383 (430)
.+++|..
T Consensus 373 t~rfw~r 379 (464)
T KOG0284|consen 373 TVRFWTR 379 (464)
T ss_pred ceeeecc
Confidence 9999943
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-41 Score=293.18 Aligned_cols=340 Identities=18% Similarity=0.265 Sum_probs=271.0
Q ss_pred cceeeccc-CCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecc
Q 014125 51 NQFRTSSI-PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFP 129 (430)
Q Consensus 51 ~~~~~~~~-h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 129 (430)
+..+.+.. |++||..++|+|.|..|++|+.||.++|||+..+.. ...+.+|++.|.++.|+|
T Consensus 95 k~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~-----------------th~fkG~gGvVssl~F~~ 157 (775)
T KOG0319|consen 95 KLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYC-----------------THSFKGHGGVVSSLLFHP 157 (775)
T ss_pred hHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEE-----------------EEEecCCCceEEEEEeCC
Confidence 45567778 999999999999999999999999999999986533 334556779999999988
Q ss_pred ccCccCCCCceEEEEeCCCcEEEEeccCCce-eeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCc
Q 014125 130 HMSASDPTSCVFASTTRDHPIHLWDATTGLL-RCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRD 207 (430)
Q Consensus 130 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~ 207 (430)
.+....|++|..|+++++||+.+... ...+..|.. .|++++|++|+..++ +|.|..+.+||+..-...
T Consensus 158 -----~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S-----~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l 227 (775)
T KOG0319|consen 158 -----HWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKS-----AVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKL 227 (775)
T ss_pred -----ccchhheeecCCCceEEEEEcccCchHHHHHHhhhh-----heeeeeeccCCceEEEeccCcEEEEeehhhhhhh
Confidence 34457899999999999999986654 445555544 889999999886666 568888888887421000
Q ss_pred ------------------------cc------------------------------------------------------
Q 014125 208 ------------------------FE------------------------------------------------------ 209 (430)
Q Consensus 208 ------------------------~~------------------------------------------------------ 209 (430)
+.
T Consensus 228 ~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l 307 (775)
T KOG0319|consen 228 KTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFL 307 (775)
T ss_pred heechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEE
Confidence 00
Q ss_pred ------------------------------------------cc---ccccCCCCCCCcceEEEEEcCCCCceEEEecCC
Q 014125 210 ------------------------------------------KY---STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS 244 (430)
Q Consensus 210 ------------------------------------------~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 244 (430)
.+ ...-....+|...|.++.... .+.+|++|+.|
T Consensus 308 ~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~-~g~llat~sKD 386 (775)
T KOG0319|consen 308 YDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWS-SGDLLATGSKD 386 (775)
T ss_pred EEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecc-cCcEEEEecCC
Confidence 00 000012357777888887443 44699999999
Q ss_pred CeEEEEEcCCc----eeeEEeeccccCeEEEEEccCCC-EEEEEecCCCeEEEEeCCCCceEE--EE---eecccCCccc
Q 014125 245 QTSAIYREDNM----ELLYVLHGQEGGVTHVQFSRDGN-YLYTGGRKDPYILCWDLRKAVQVV--YK---LYRSSEHTNQ 314 (430)
Q Consensus 245 g~v~~~d~~~~----~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~d~~i~i~d~~~~~~~~--~~---~~~~~~~~~~ 314 (430)
.++++|.++++ -++....+|.+.|.+++++..+. +|++++ .|+++++|++...+... .. ......|...
T Consensus 387 ~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS-~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKd 465 (775)
T KOG0319|consen 387 KSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVS-QDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKD 465 (775)
T ss_pred ceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEec-CCceEEEecCCCcccccccceehhhHHHHhhccc
Confidence 99999988543 24556678999999999987665 566666 99999999998732111 11 1233578999
Q ss_pred eEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeecC------------
Q 014125 315 RILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDD------------ 382 (430)
Q Consensus 315 v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~------------ 382 (430)
|++++++|+..++||||.|.+.+||+++......++.+|...|.++.|+|..+.++|+|+|++|+||.
T Consensus 466 IN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eG 545 (775)
T KOG0319|consen 466 INCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEG 545 (775)
T ss_pred ccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999993
Q ss_pred -------------CCccccccCCCcEEEEeecccccccccCCCCcceeee
Q 014125 383 -------------FEDLHLSGDENCVSVWSFLYASMMENADGINGCEFNC 419 (430)
Q Consensus 383 -------------~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~ 419 (430)
..+|+++|.||-|++|++.+++++.++++|.+-.|.-
T Consensus 546 H~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL 595 (775)
T KOG0319|consen 546 HTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWAL 595 (775)
T ss_pred ccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEE
Confidence 3449999999999999999999999999999877764
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-40 Score=261.11 Aligned_cols=370 Identities=45% Similarity=0.768 Sum_probs=296.7
Q ss_pred cCceeeccccccCCCCCcceeeecceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCccccccccccccc
Q 014125 28 NQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQ 107 (430)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~ 107 (430)
.++...|| +.+...+.........+.. .........+.|||||..|++-+.|..+++|++............ ..
T Consensus 19 de~~~s~n-~~y~qg~~~l~g~~~~~st-t~p~nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~----~~ 92 (406)
T KOG2919|consen 19 DEKKKSWN-FGYVQGPINLGGNVIAFST-TKPLNFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGP----LN 92 (406)
T ss_pred cchhccCc-cceeecceeccCceEEecc-CCchhhhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCc----cc
Confidence 33444454 5554333333332222222 224556788999999999999999999999999754332221111 11
Q ss_pred CcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcE
Q 014125 108 DSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTK 187 (430)
Q Consensus 108 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 187 (430)
......+....+..|+..+|.+......|+.+++++.+.+.-|++||.-+|+....+....+.+......+++|+|||..
T Consensus 93 ~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeq 172 (406)
T KOG2919|consen 93 FSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQ 172 (406)
T ss_pred cccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCe
Confidence 12334456677889999999999988899999999999999999999999999999999888887778899999999999
Q ss_pred EEEEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccC
Q 014125 188 IFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGG 267 (430)
Q Consensus 188 l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~ 267 (430)
|++|..+.|++||+..++.......+..+...+..+.+.+++|+|.....+++|+...++-||.-..+.++..+-+|.+.
T Consensus 173 lfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gG 252 (406)
T KOG2919|consen 173 LFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGG 252 (406)
T ss_pred EeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCC
Confidence 99999999999999888887776666666567778899999999988889999999999999999999999999999999
Q ss_pred eEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCC-CCe
Q 014125 268 VTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQT-GKW 346 (430)
Q Consensus 268 i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~ 346 (430)
|+.++|.++|+.|+++++.|..|.+||+|....++..+.+..+..+.-.-+...|++++|++|+.||.|++||+.+ +..
T Consensus 253 vThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~ 332 (406)
T KOG2919|consen 253 VTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNE 332 (406)
T ss_pred eeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCc
Confidence 9999999999999999999999999999998887777766555566666788899999999999999999999998 777
Q ss_pred ecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCCC------ccccccCCCcEEEEeeccc
Q 014125 347 ISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFE------DLHLSGDENCVSVWSFLYA 403 (430)
Q Consensus 347 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~------~l~~~~~d~~i~~w~~~~~ 403 (430)
+..+..+...++.++++|.-+++++++....+..-+.+ .+-...+.+...+|-.-..
T Consensus 333 ~sv~~~~sd~vNgvslnP~mpilatssGqr~f~~~~dD~ge~~~el~~~ad~n~~qlw~~y~~ 395 (406)
T KOG2919|consen 333 VSVTGNYSDTVNGVSLNPIMPILATSSGQRIFKYPKDDNGELETELEEEADENEKQLWTGYVS 395 (406)
T ss_pred ccccccccccccceecCcccceeeeccCceeecCCCcccccccccccchhhhhhhheeeeecc
Confidence 88899999999999999999999999987777665331 1222234455556644433
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=266.83 Aligned_cols=289 Identities=18% Similarity=0.286 Sum_probs=252.0
Q ss_pred cceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccc
Q 014125 51 NQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH 130 (430)
Q Consensus 51 ~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 130 (430)
.....+.+|..+|+.+-|+|+-..+++++.|++|++||..++++...+.+ |...|.+++|
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrG-----------------Ht~sv~di~~--- 158 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRG-----------------HTDSVFDISF--- 158 (406)
T ss_pred CchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhc-----------------cccceeEEEE---
Confidence 44556789999999999999999999999999999999999876554444 3467999999
Q ss_pred cCccCCCCceEEEEeCCCcEEEEeccC-CceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCcc
Q 014125 131 MSASDPTSCVFASTTRDHPIHLWDATT-GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDF 208 (430)
Q Consensus 131 ~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~ 208 (430)
+..|+++++++.|-.+++||..+ .++++....+.. .|.+++|-|.|.+|+ ++.|.+|+.|++.++
T Consensus 159 ----~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h-----~vS~V~f~P~gd~ilS~srD~tik~We~~tg---- 225 (406)
T KOG0295|consen 159 ----DASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEH-----GVSSVFFLPLGDHILSCSRDNTIKAWECDTG---- 225 (406)
T ss_pred ----ecCccEEEecCCccchhheeHHHHHHHHHHhcCccc-----ceeeEEEEecCCeeeecccccceeEEecccc----
Confidence 77899999999999999999877 445555555555 899999999999999 569999999999884
Q ss_pred cccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccC------------
Q 014125 209 EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRD------------ 276 (430)
Q Consensus 209 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~------------ 276 (430)
.....+.+|...|..+..+. ++.++++++.|.+|++|-+.++++...+..|+.+|-+++|.|.
T Consensus 226 ----~cv~t~~~h~ewvr~v~v~~-DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~ 300 (406)
T KOG0295|consen 226 ----YCVKTFPGHSEWVRMVRVNQ-DGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGS 300 (406)
T ss_pred ----eeEEeccCchHhEEEEEecC-CeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCC
Confidence 33344578888999999999 6779999999999999999999999999999999999999874
Q ss_pred ---CCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccc
Q 014125 277 ---GNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAA 353 (430)
Q Consensus 277 ---~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 353 (430)
++++.+++ .|++|++||+.++..+. ...+|.+.|..++|+|.|+||+++.+|+++++||++++++...+..|
T Consensus 301 ~~~~~~l~s~S-rDktIk~wdv~tg~cL~----tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah 375 (406)
T KOG0295|consen 301 TNGGQVLGSGS-RDKTIKIWDVSTGMCLF----TLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAH 375 (406)
T ss_pred CCCccEEEeec-ccceEEEEeccCCeEEE----EEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCC
Confidence 24777777 99999999999985443 33689999999999999999999999999999999999999999999
Q ss_pred cCCeeEEEEcCCCcEEEEeeCCceeeecC
Q 014125 354 ADTVNGFSFHPFLPMAASSSGHRRFPVDD 382 (430)
Q Consensus 354 ~~~v~~~~~~~~~~~l~s~~~d~~~~vw~ 382 (430)
..-|+++.|+.+..+++||+.|..+++|.
T Consensus 376 ~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 376 EHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred cceeEEEecCCCCceEEeccccceeeeee
Confidence 99999999999999999999887777774
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=253.01 Aligned_cols=249 Identities=20% Similarity=0.310 Sum_probs=217.1
Q ss_pred eeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-c
Q 014125 114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-Y 192 (430)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~ 192 (430)
...+|...|+++.| ++|++++++++.||.+.|||.-+...+..++.... .|..++|+|.+.++++| -
T Consensus 50 ~LkGH~~Ki~~~~w-------s~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~-----WVMtCA~sPSg~~VAcGGL 117 (343)
T KOG0286|consen 50 TLKGHLNKIYAMDW-------STDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSS-----WVMTCAYSPSGNFVACGGL 117 (343)
T ss_pred EecccccceeeeEe-------cCCcCeEEeeccCCeEEEEEcccccceeEEecCce-----eEEEEEECCCCCeEEecCc
Confidence 34457789999999 78999999999999999999999888888877765 89999999999999965 8
Q ss_pred CCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEE
Q 014125 193 NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQ 272 (430)
Q Consensus 193 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~ 272 (430)
|+...||++...... ........+.+|.+.+.++.|-+ .+.|++++.|.+..+||+++++.+..+.+|.+.|.+++
T Consensus 118 dN~Csiy~ls~~d~~--g~~~v~r~l~gHtgylScC~f~d--D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~sls 193 (343)
T KOG0286|consen 118 DNKCSIYPLSTRDAE--GNVRVSRELAGHTGYLSCCRFLD--DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLS 193 (343)
T ss_pred CceeEEEeccccccc--ccceeeeeecCccceeEEEEEcC--CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEe
Confidence 999999999854221 11234445689999999999987 34899999999999999999999999999999999999
Q ss_pred Ecc-CCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccc
Q 014125 273 FSR-DGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQ 351 (430)
Q Consensus 273 ~~~-~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 351 (430)
++| +++.+++++ .|+..++||+|.+.... .+.+|...|+++.|.|+|.-+++|++|++.++||++..+.+..+.
T Consensus 194 l~p~~~ntFvSg~-cD~~aklWD~R~~~c~q----tF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys 268 (343)
T KOG0286|consen 194 LSPSDGNTFVSGG-CDKSAKLWDVRSGQCVQ----TFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYS 268 (343)
T ss_pred cCCCCCCeEEecc-cccceeeeeccCcceeE----eecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeec
Confidence 999 899999999 99999999999985442 336899999999999999999999999999999999998888776
Q ss_pred cc--cCCeeEEEEcCCCcEEEEeeCCceeeecCC
Q 014125 352 AA--ADTVNGFSFHPFLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 352 ~~--~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~ 383 (430)
.. ..+|++++|+..|++|++|..|..+.|||.
T Consensus 269 ~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDt 302 (343)
T KOG0286|consen 269 HDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDT 302 (343)
T ss_pred cCcccCCceeEEEcccccEEEeeecCCceeEeec
Confidence 32 238999999999999999998888888853
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=271.20 Aligned_cols=317 Identities=19% Similarity=0.276 Sum_probs=251.4
Q ss_pred eecccCCCceeEEEECcCCc-eEEEecCCCeEEEEeCCCCCCcc----cccccccccccCcccceeeecCCCeeeeeeec
Q 014125 54 RTSSIPNNFLKGIKWSPDGS-SFLTSSEDKTLRIFSLPENGISY----DVNACSLAKDQDSYEASLVVTEGESVYDFCWF 128 (430)
Q Consensus 54 ~~~~~h~~~v~~~~~sp~~~-~l~s~~~dg~v~iw~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 128 (430)
+++. |..+|.+++|+|-.. .|++|+.|-+.++|++....... .++.+. ............|++++|
T Consensus 173 kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~-------~~~~~s~~~nkdVT~L~W- 243 (524)
T KOG0273|consen 173 KVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCI-------REGGKSVPSNKDVTSLDW- 243 (524)
T ss_pred eecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhh-------hhhcccCCccCCcceEEe-
Confidence 4555 999999999999665 99999999999999997511100 000000 000112233468999999
Q ss_pred cccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCCc
Q 014125 129 PHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRD 207 (430)
Q Consensus 129 ~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~~ 207 (430)
+.+|..||+|+.||.+++|+.. |..+..+..|.. +|.++.|+..|.+|++ +.|+++.+||..++
T Consensus 244 ------n~~G~~LatG~~~G~~riw~~~-G~l~~tl~~Hkg-----PI~slKWnk~G~yilS~~vD~ttilwd~~~g--- 308 (524)
T KOG0273|consen 244 ------NNDGTLLATGSEDGEARIWNKD-GNLISTLGQHKG-----PIFSLKWNKKGTYILSGGVDGTTILWDAHTG--- 308 (524)
T ss_pred ------cCCCCeEEEeecCcEEEEEecC-chhhhhhhccCC-----ceEEEEEcCCCCEEEeccCCccEEEEeccCc---
Confidence 7799999999999999999974 556666666665 9999999999999995 59999999998763
Q ss_pred ccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCC
Q 014125 208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKD 287 (430)
Q Consensus 208 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d 287 (430)
.....+.-|..+-..+.|-. ..-+++++.|+.|+++.+....++.++.+|.++|.++.|+|.|..|++++ .|
T Consensus 309 -----~~~q~f~~~s~~~lDVdW~~--~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~S-dD 380 (524)
T KOG0273|consen 309 -----TVKQQFEFHSAPALDVDWQS--NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCS-DD 380 (524)
T ss_pred -----eEEEeeeeccCCccceEEec--CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEec-CC
Confidence 23333455555556778864 44799999999999999999999999999999999999999999999999 99
Q ss_pred CeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCC---------CEEEEEccCCcEEEEEcCCCCeecccccccCCee
Q 014125 288 PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSG---------RHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVN 358 (430)
Q Consensus 288 ~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~ 358 (430)
++++||.+...... .....|...|..+.|+|+| ..+++++.|++|++||+..+.++..|..|..+|.
T Consensus 381 ~TlkiWs~~~~~~~----~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVy 456 (524)
T KOG0273|consen 381 GTLKIWSMGQSNSV----HDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVY 456 (524)
T ss_pred CeeEeeecCCCcch----hhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceE
Confidence 99999998766432 3346899999999999964 4799999999999999999999999999999999
Q ss_pred EEEEcCCCcEEEEeeCCceeeecCCCc---cccccCCCcEE--EEeecccccc
Q 014125 359 GFSFHPFLPMAASSSGHRRFPVDDFED---LHLSGDENCVS--VWSFLYASMM 406 (430)
Q Consensus 359 ~~~~~~~~~~l~s~~~d~~~~vw~~~~---l~~~~~d~~i~--~w~~~~~~~~ 406 (430)
+++|+|+|+++|+|+-||.|.+|+... +-+-..++.|. .|+.......
T Consensus 457 svafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~ 509 (524)
T KOG0273|consen 457 SVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLG 509 (524)
T ss_pred EEEecCCCcEEEecCCCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEE
Confidence 999999999999999999999997654 22333444443 4555554433
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=286.72 Aligned_cols=295 Identities=22% Similarity=0.336 Sum_probs=240.0
Q ss_pred ceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCccc-----ccc---------cccccccCcccceeeec
Q 014125 52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYD-----VNA---------CSLAKDQDSYEASLVVT 117 (430)
Q Consensus 52 ~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~-----~~~---------~~~~~~~~~~~~~~~~~ 117 (430)
+..++..-...++|..|++|++.||.|-.|..|++|.+...++..- +.. ................+
T Consensus 370 c~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~G 449 (707)
T KOG0263|consen 370 CMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYG 449 (707)
T ss_pred EEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeec
Confidence 3444555556799999999999999999999999999985332110 000 11112233344455789
Q ss_pred CCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeE
Q 014125 118 EGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSV 196 (430)
Q Consensus 118 ~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i 196 (430)
|+++|+...| +|+.++|+++++|+++++|.+.+..++-.+++|.. +|+.+.|+|.|.+++ ++.|++-
T Consensus 450 H~GPVyg~sF-------sPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~-----PVwdV~F~P~GyYFatas~D~tA 517 (707)
T KOG0263|consen 450 HSGPVYGCSF-------SPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLA-----PVWDVQFAPRGYYFATASHDQTA 517 (707)
T ss_pred CCCceeeeee-------cccccceeeccCCcceeeeecccceeEEEecCCCc-----ceeeEEecCCceEEEecCCCcee
Confidence 9999999999 77999999999999999999999999999998876 999999999999999 5599999
Q ss_pred EEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccC
Q 014125 197 RVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRD 276 (430)
Q Consensus 197 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~ 276 (430)
++|.... ......+.+|.+.|.|+.|+| +.+++++|+.|.+|++||..+|..++.|.+|.++|.+++|||+
T Consensus 518 rLWs~d~--------~~PlRifaghlsDV~cv~FHP-Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~ 588 (707)
T KOG0263|consen 518 RLWSTDH--------NKPLRIFAGHLSDVDCVSFHP-NSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPC 588 (707)
T ss_pred eeeeccc--------CCchhhhcccccccceEEECC-cccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCC
Confidence 9999877 233344578999999999999 8889999999999999999999999999999999999999999
Q ss_pred CCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCC-----------
Q 014125 277 GNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGK----------- 345 (430)
Q Consensus 277 ~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~----------- 345 (430)
|++|++++ .||.|.+||+.++... ....+|.+.|.++.|+.+|..||+|+.|++|++||+..-.
T Consensus 589 Gr~LaSg~-ed~~I~iWDl~~~~~v----~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~ 663 (707)
T KOG0263|consen 589 GRYLASGD-EDGLIKIWDLANGSLV----KQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTS 663 (707)
T ss_pred CceEeecc-cCCcEEEEEcCCCcch----hhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcccccccccccc
Confidence 99999999 9999999999987543 2235789999999999999999999999999999986422
Q ss_pred -------------eecccccccCCeeEEEEcCCCcEEEEe
Q 014125 346 -------------WISGFQAAADTVNGFSFHPFLPMAASS 372 (430)
Q Consensus 346 -------------~~~~~~~~~~~v~~~~~~~~~~~l~s~ 372 (430)
++..+..-..+|.++.|......|+.|
T Consensus 664 ~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrNl~L~~g 703 (707)
T KOG0263|consen 664 NSAITQENNASSLLLGSFYTKNTPVVGLHFTRRNLLLAVG 703 (707)
T ss_pred cccccccCCCCcceeeeeeecCceEEEEEEeccceeEEec
Confidence 223333344567777777655444443
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=242.20 Aligned_cols=272 Identities=17% Similarity=0.267 Sum_probs=225.6
Q ss_pred cceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccc
Q 014125 51 NQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH 130 (430)
Q Consensus 51 ~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 130 (430)
.+.++.....+.|+.+...||+++||+++.- .||+||+.++.. ........|.+.|.++.|
T Consensus 31 ~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np---------------~Pv~t~e~h~kNVtaVgF--- 91 (311)
T KOG0315|consen 31 ICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNP---------------NPVATFEGHTKNVTAVGF--- 91 (311)
T ss_pred eEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCC---------------CceeEEeccCCceEEEEE---
Confidence 4566777778889999999999999998875 799999987642 233345567789999999
Q ss_pred cCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCccc
Q 014125 131 MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFE 209 (430)
Q Consensus 131 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~ 209 (430)
..+|+.+++|++||+++|||++.-.+.+.++.. .+|+++..+|+...|++| .+|.|++||+......-.
T Consensus 92 ----~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~------spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~ 161 (311)
T KOG0315|consen 92 ----QCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN------SPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHE 161 (311)
T ss_pred ----eecCeEEEecCCCceEEEEeccCcccchhccCC------CCcceEEecCCcceEEeecCCCcEEEEEccCCccccc
Confidence 679999999999999999999986666555544 399999999999888866 899999999987422111
Q ss_pred ccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCc------eeeEEeeccccCeEEEEEccCCCEEEEE
Q 014125 210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM------ELLYVLHGQEGGVTHVQFSRDGNYLYTG 283 (430)
Q Consensus 210 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~------~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 283 (430)
........|.++...| ++.+++.+...|+.++|++-.. +++.+++.|.+.+..+.+||++++|+++
T Consensus 162 -------liPe~~~~i~sl~v~~-dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ 233 (311)
T KOG0315|consen 162 -------LIPEDDTSIQSLTVMP-DGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATC 233 (311)
T ss_pred -------cCCCCCcceeeEEEcC-CCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEee
Confidence 1133346799999999 6679999999999999998654 4667788999999999999999999999
Q ss_pred ecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEc
Q 014125 284 GRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFH 363 (430)
Q Consensus 284 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~ 363 (430)
+ .|.+++||+.++...... ...+|...++.++||.||+||++|+.|+.+++|++..++.+..+.+|..+..+++..
T Consensus 234 s-sdktv~iwn~~~~~kle~---~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 234 S-SDKTVKIWNTDDFFKLEL---VLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred c-CCceEEEEecCCceeeEE---EeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 9 999999999988732222 236788999999999999999999999999999999999999999998887777654
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-38 Score=271.68 Aligned_cols=286 Identities=26% Similarity=0.378 Sum_probs=241.2
Q ss_pred eecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCc
Q 014125 54 RTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (430)
Q Consensus 54 ~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (430)
+.+.+|.++|++++|+|++++|++++.||.|++|++.++... .....|...+..+.|
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~-----------------~~~~~~~~~i~~~~~------ 59 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELL-----------------RTLKGHTGPVRDVAA------ 59 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcE-----------------EEEecCCcceeEEEE------
Confidence 456799999999999999999999999999999999865321 122345567888899
Q ss_pred cCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEc-CCeEEEEEcCCCCCcccccc
Q 014125 134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGY-NKSVRVFDVHRPGRDFEKYS 212 (430)
Q Consensus 134 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~v~d~~~~~~~~~~~~ 212 (430)
+++++.+++++.+|.|++|++.+++....+..+.. .+.++.|++++.+++++. ++.|.+||++...
T Consensus 60 -~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------- 126 (289)
T cd00200 60 -SADGTYLASGSSDKTIRLWDLETGECVRTLTGHTS-----YVSSVAFSPDGRILSSSSRDKTIKVWDVETGK------- 126 (289)
T ss_pred -CCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCC-----cEEEEEEcCCCCEEEEecCCCeEEEEECCCcE-------
Confidence 56778999999999999999998877777775554 899999999988888775 9999999997521
Q ss_pred cccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEE
Q 014125 213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILC 292 (430)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i 292 (430)
.......|...+.++.|+| .+.++++++.++.|++||+++++....+..|...+.+++|+|+++.+++++ .|+.|++
T Consensus 127 -~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~~i~i 203 (289)
T cd00200 127 -CLTTLRGHTDWVNSVAFSP-DGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSS-SDGTIKL 203 (289)
T ss_pred -EEEEeccCCCcEEEEEEcC-cCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEec-CCCcEEE
Confidence 1112236677899999999 467888888899999999999988888888988999999999999999999 7999999
Q ss_pred EeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEe
Q 014125 293 WDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASS 372 (430)
Q Consensus 293 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 372 (430)
||++...... . ...+...+.++.|+|++.++++++.||.|++||+.+++.+..+..|...|.+++|+|++++|+++
T Consensus 204 ~d~~~~~~~~-~---~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 279 (289)
T cd00200 204 WDLSTGKCLG-T---LRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASG 279 (289)
T ss_pred EECCCCceec-c---hhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEe
Confidence 9998754321 2 23567799999999999999998889999999999999999999999999999999999999999
Q ss_pred eCCceeeecC
Q 014125 373 SGHRRFPVDD 382 (430)
Q Consensus 373 ~~d~~~~vw~ 382 (430)
+.|+.+++|+
T Consensus 280 ~~d~~i~iw~ 289 (289)
T cd00200 280 SADGTIRIWD 289 (289)
T ss_pred cCCCeEEecC
Confidence 9877777774
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-39 Score=263.95 Aligned_cols=300 Identities=19% Similarity=0.237 Sum_probs=230.7
Q ss_pred CcceeeecceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeee
Q 014125 44 HRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVY 123 (430)
Q Consensus 44 ~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 123 (430)
.+..-|.+..+++..|++.|.-+.||++|+||||++.|.+..||.+..... -.......+|..+|.
T Consensus 208 ~~~qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~--------------~kl~~tlvgh~~~V~ 273 (519)
T KOG0293|consen 208 GRLQIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH--------------FKLKKTLVGHSQPVS 273 (519)
T ss_pred CcccCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc--------------eeeeeeeecccCceE
Confidence 344455677889999999999999999999999999999999999864321 112334567788999
Q ss_pred eeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcC
Q 014125 124 DFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVH 202 (430)
Q Consensus 124 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~ 202 (430)
.+.| |||.++|++|+.+..+.+||+.+|.....+.... ...+.+++|.|||..+++| .|+.+..||++
T Consensus 274 yi~w-------SPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~----~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD 342 (519)
T KOG0293|consen 274 YIMW-------SPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGL----GFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD 342 (519)
T ss_pred EEEE-------CCCCCeEEecCchHheeeccCCcchhhhhcccCc----CCCcceeEEccCCceeEecCCCCcEEEecCC
Confidence 9999 8899999999999999999999999887776541 2378899999999999866 89999999997
Q ss_pred CCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEE
Q 014125 203 RPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYT 282 (430)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 282 (430)
.... ...+ ......|.+++..+| +..+++.+.|..|++|+..+......+. ...+|++++.|.+++++++
T Consensus 343 gn~~-----~~W~---gvr~~~v~dlait~D-gk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~Lv 412 (519)
T KOG0293|consen 343 GNIL-----GNWE---GVRDPKVHDLAITYD-GKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALV 412 (519)
T ss_pred cchh-----hccc---ccccceeEEEEEcCC-CcEEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEE
Confidence 6311 1111 111245899999995 5566666789999999988765554444 4578999999999999999
Q ss_pred EecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcC-CCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEE
Q 014125 283 GGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEP-SGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFS 361 (430)
Q Consensus 283 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~ 361 (430)
.- .+..+++||+.....+ .+... ......+..-+|-- +..++++|++|+.|+||+..+++++.++.||...|++++
T Consensus 413 nL-~~qei~LWDl~e~~lv-~kY~G-hkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVs 489 (519)
T KOG0293|consen 413 NL-QDQEIHLWDLEENKLV-RKYFG-HKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVS 489 (519)
T ss_pred Ec-ccCeeEEeecchhhHH-HHhhc-ccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEe
Confidence 88 8999999999965322 22211 22233344445543 347999999999999999999999999999999999999
Q ss_pred EcCCCc-EEEEeeCCceeeec
Q 014125 362 FHPFLP-MAASSSGHRRFPVD 381 (430)
Q Consensus 362 ~~~~~~-~l~s~~~d~~~~vw 381 (430)
|+|..+ ++|+++.||+|+||
T Consensus 490 wNP~~p~m~ASasDDgtIRIW 510 (519)
T KOG0293|consen 490 WNPADPEMFASASDDGTIRIW 510 (519)
T ss_pred cCCCCHHHhhccCCCCeEEEe
Confidence 999755 55565544333333
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-38 Score=244.91 Aligned_cols=252 Identities=21% Similarity=0.310 Sum_probs=208.0
Q ss_pred cceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccc
Q 014125 51 NQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH 130 (430)
Q Consensus 51 ~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 130 (430)
...+.+.||+..|..+..++||++.++++.|+++++||+.+++ ....+.+|...|.+++|
T Consensus 54 ~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~-----------------~t~~f~GH~~dVlsva~--- 113 (315)
T KOG0279|consen 54 VPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGE-----------------STRRFVGHTKDVLSVAF--- 113 (315)
T ss_pred ceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCc-----------------EEEEEEecCCceEEEEe---
Confidence 4567899999999999999999999999999999999998753 34567788899999999
Q ss_pred cCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCC--CcEEE-EEcCCeEEEEEcCCCCCc
Q 014125 131 MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT--GTKIF-AGYNKSVRVFDVHRPGRD 207 (430)
Q Consensus 131 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~-~~~d~~i~v~d~~~~~~~ 207 (430)
++|.+.+++|+.|.+|++|+...+... ++.... +..-|.|+.|+|+ ..+|+ ++.|++|++||++.
T Consensus 114 ----s~dn~qivSGSrDkTiklwnt~g~ck~-t~~~~~---~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~---- 181 (315)
T KOG0279|consen 114 ----STDNRQIVSGSRDKTIKLWNTLGVCKY-TIHEDS---HREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRN---- 181 (315)
T ss_pred ----cCCCceeecCCCcceeeeeeecccEEE-EEecCC---CcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCC----
Confidence 789999999999999999998765433 332221 1348999999999 56677 66999999999987
Q ss_pred ccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCC
Q 014125 208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKD 287 (430)
Q Consensus 208 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d 287 (430)
..+...+.+|.+.++.++++| ++.++++|+.||.+.+||++.++.+..+. |...|.+++|+|+.-.|+.+ .+
T Consensus 182 ----~~l~~~~~gh~~~v~t~~vSp-DGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~a--t~ 253 (315)
T KOG0279|consen 182 ----CQLRTTFIGHSGYVNTVTVSP-DGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAA--TA 253 (315)
T ss_pred ----cchhhccccccccEEEEEECC-CCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeec--cC
Confidence 556666789999999999999 66799999999999999999999988887 78899999999998766665 47
Q ss_pred CeEEEEeCCCCceEEEEeeccc-----CCccceEEEEEcCCCCEEEEEccCCcEEEEEcC
Q 014125 288 PYILCWDLRKAVQVVYKLYRSS-----EHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQ 342 (430)
Q Consensus 288 ~~i~i~d~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 342 (430)
..|+|||+.+............ .......+++|+++|..|++|-.|+.|++|.+.
T Consensus 254 ~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 254 TSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred CceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 7799999988643322111111 123446789999999999999999999999875
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=249.53 Aligned_cols=287 Identities=15% Similarity=0.142 Sum_probs=234.5
Q ss_pred cceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccc
Q 014125 51 NQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH 130 (430)
Q Consensus 51 ~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 130 (430)
.....+..|+++|.+++.+|+.++++|||.|..-.+|++.++... .....|...|.++.|
T Consensus 55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~-----------------~eltgHKDSVt~~~F--- 114 (399)
T KOG0296|consen 55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFA-----------------GELTGHKDSVTCCSF--- 114 (399)
T ss_pred cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcce-----------------eEecCCCCceEEEEE---
Confidence 345689999999999999999999999999999999999887533 344557789999999
Q ss_pred cCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCccc
Q 014125 131 MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFE 209 (430)
Q Consensus 131 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~ 209 (430)
+.+|.+||+|+.+|.|+||+..++.....+..... .+.-+.|+|.+..|++| .||.+.+|.+...
T Consensus 115 ----shdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~-----dieWl~WHp~a~illAG~~DGsvWmw~ip~~----- 180 (399)
T KOG0296|consen 115 ----SHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVE-----DIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ----- 180 (399)
T ss_pred ----ccCceEEEecCCCccEEEEEcccCceEEEeecccC-----ceEEEEecccccEEEeecCCCcEEEEECCCc-----
Confidence 88999999999999999999999988887763322 77889999999999876 8999999999763
Q ss_pred ccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeec--------------------------
Q 014125 210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG-------------------------- 263 (430)
Q Consensus 210 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~-------------------------- 263 (430)
...+.+.+|..++++=.|.| +++.++++..||+|++|+..++.++..+..
T Consensus 181 ---~~~kv~~Gh~~~ct~G~f~p-dGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~ 256 (399)
T KOG0296|consen 181 ---ALCKVMSGHNSPCTCGEFIP-DGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGV 256 (399)
T ss_pred ---ceeeEecCCCCCcccccccC-CCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCcc
Confidence 23334578999999999999 577999999999999999999987766541
Q ss_pred -------------------------cccCeEEEEEcc---CCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccce
Q 014125 264 -------------------------QEGGVTHVQFSR---DGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQR 315 (430)
Q Consensus 264 -------------------------~~~~i~~~~~~~---~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v 315 (430)
+...+.++.+.| .=.+.++++ .||+|.|||+...... ..-.|...|
T Consensus 257 ~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~-vdG~i~iyD~a~~~~R-----~~c~he~~V 330 (399)
T KOG0296|consen 257 ACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGS-VDGTIAIYDLAASTLR-----HICEHEDGV 330 (399)
T ss_pred EEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhccc-ccceEEEEecccchhh-----eeccCCCce
Confidence 011111222222 223455666 9999999999875321 224678889
Q ss_pred EEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeecC
Q 014125 316 ILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDD 382 (430)
Q Consensus 316 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~ 382 (430)
+.+.|-+ ..+|++++.+|.|+.||.++|+++..+.+|...|.+++.+|+.++++|+|.|+..+|+.
T Consensus 331 ~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 331 TKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFE 396 (399)
T ss_pred EEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEe
Confidence 9999998 78999999999999999999999999999999999999999999999999766555543
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-37 Score=279.41 Aligned_cols=289 Identities=26% Similarity=0.376 Sum_probs=240.2
Q ss_pred ceeecccC-CCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccc
Q 014125 52 QFRTSSIP-NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH 130 (430)
Q Consensus 52 ~~~~~~~h-~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 130 (430)
....+.+| ...|.++.|+|+|++|++++.|+.+++|++..... ........|...|.+++|
T Consensus 150 ~~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~---------------~~~~~l~~h~~~v~~~~f--- 211 (456)
T KOG0266|consen 150 LEQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS---------------NLLRELSGHTRGVSDVAF--- 211 (456)
T ss_pred eeeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc---------------hhhccccccccceeeeEE---
Confidence 34555555 78999999999999999999999999999965431 011111457789999999
Q ss_pred cCccCCCCceEEEEeCCCcEEEEec-cCCceeeeeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCCcc
Q 014125 131 MSASDPTSCVFASTTRDHPIHLWDA-TTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDF 208 (430)
Q Consensus 131 ~~~~~~~~~~l~~~~~dg~i~vwd~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~ 208 (430)
+|++.++++++.|++|++||+ ..+..++.+..|.. .|++++|+|+++++++ +.|++|++||++.
T Consensus 212 ----s~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~-----~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~----- 277 (456)
T KOG0266|consen 212 ----SPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHST-----YVTSVAFSPDGNLLVSGSDDGTVRIWDVRT----- 277 (456)
T ss_pred ----CCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCC-----ceEEEEecCCCCEEEEecCCCcEEEEeccC-----
Confidence 779999999999999999999 55588888888776 9999999999988885 4999999999987
Q ss_pred cccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCce--eeEEeeccccC--eEEEEEccCCCEEEEEe
Q 014125 209 EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME--LLYVLHGQEGG--VTHVQFSRDGNYLYTGG 284 (430)
Q Consensus 209 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~--~~~~~~~~~~~--i~~~~~~~~~~~l~~~~ 284 (430)
......+.+|...|++++|++ ++++|++++.|+.|++||+.++. +...+..+... +++++|+|++.++++++
T Consensus 278 ---~~~~~~l~~hs~~is~~~f~~-d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~ 353 (456)
T KOG0266|consen 278 ---GECVRKLKGHSDGISGLAFSP-DGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSAS 353 (456)
T ss_pred ---CeEEEeeeccCCceEEEEECC-CCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEec
Confidence 234445588999999999999 67799999999999999999998 56677766655 99999999999999999
Q ss_pred cCCCeEEEEeCCCCceEEEEeecccCCcc---ceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccc-cCCeeEE
Q 014125 285 RKDPYILCWDLRKAVQVVYKLYRSSEHTN---QRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAA-ADTVNGF 360 (430)
Q Consensus 285 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~ 360 (430)
.|+.+++||++........ .+|.. .+.+...++.+.++++|+.|+.|++||+.++..+..+.+| ...+..+
T Consensus 354 -~d~~~~~w~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~ 428 (456)
T KOG0266|consen 354 -LDRTLKLWDLRSGKSVGTY----TGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDL 428 (456)
T ss_pred -CCCeEEEEEccCCcceeee----cccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceecc
Confidence 9999999999987544322 23333 4445566788999999999999999999999999999999 8899999
Q ss_pred EEcCCCcEEEEeeC--Cceeeec
Q 014125 361 SFHPFLPMAASSSG--HRRFPVD 381 (430)
Q Consensus 361 ~~~~~~~~l~s~~~--d~~~~vw 381 (430)
.|+|..+++++++. |+.+++|
T Consensus 429 ~~~~~~~~~~s~s~~~d~~~~~w 451 (456)
T KOG0266|consen 429 SSHPTENLIASSSFEGDGLIRLW 451 (456)
T ss_pred ccCCCcCeeeecCcCCCceEEEe
Confidence 99999999999983 4444444
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-37 Score=234.09 Aligned_cols=279 Identities=22% Similarity=0.330 Sum_probs=233.3
Q ss_pred cceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccc
Q 014125 51 NQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH 130 (430)
Q Consensus 51 ~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 130 (430)
+..+.+..|.++|.++.|+-||+|.++|+.|.+|++|+...+.+. ....+|+..|.+++-
T Consensus 8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~li-----------------ktYsghG~EVlD~~~--- 67 (307)
T KOG0316|consen 8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALI-----------------KTYSGHGHEVLDAAL--- 67 (307)
T ss_pred hhceeecccccceEEEEEccCCCEEEEcCCCceEEeeccccccee-----------------eeecCCCceeeeccc---
Confidence 445688999999999999999999999999999999998765443 234457788988887
Q ss_pred cCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCccc
Q 014125 131 MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFE 209 (430)
Q Consensus 131 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~ 209 (430)
+.|+..|++|+.|..+.+||+.+|+..+.+..|.. .|+.+.|+.+...+++| .|.++++||.+.....
T Consensus 68 ----s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~a-----qVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~e-- 136 (307)
T KOG0316|consen 68 ----SSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLA-----QVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFE-- 136 (307)
T ss_pred ----cccccccccCCCCceEEEEEcccCeeeeecccccc-----eeeEEEecCcceEEEeccccceeEEEEcccCCCC--
Confidence 67889999999999999999999999999999887 99999999999999855 8999999999874331
Q ss_pred ccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCe
Q 014125 210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPY 289 (430)
Q Consensus 210 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~ 289 (430)
+.+.+......|.++... ...+++|+.||+++.||++.++.....-+ .+|++++|+++++..++++ .|++
T Consensus 137 ----PiQildea~D~V~Si~v~---~heIvaGS~DGtvRtydiR~G~l~sDy~g--~pit~vs~s~d~nc~La~~-l~st 206 (307)
T KOG0316|consen 137 ----PIQILDEAKDGVSSIDVA---EHEIVAGSVDGTVRTYDIRKGTLSSDYFG--HPITSVSFSKDGNCSLASS-LDST 206 (307)
T ss_pred ----ccchhhhhcCceeEEEec---ccEEEeeccCCcEEEEEeecceeehhhcC--CcceeEEecCCCCEEEEee-ccce
Confidence 222234445678899885 45899999999999999999987766554 5799999999999999999 9999
Q ss_pred EEEEeCCCCceEEEEeecccCCcc--ceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCC-eeEEEEcCCC
Q 014125 290 ILCWDLRKAVQVVYKLYRSSEHTN--QRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADT-VNGFSFHPFL 366 (430)
Q Consensus 290 i~i~d~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~~ 366 (430)
+++.|-.+++.. .. ..+|.+ .-..++++....++++|++||.|++||+.....+..+..+... |.++.++|.-
T Consensus 207 lrLlDk~tGklL-~s---YkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~ 282 (307)
T KOG0316|consen 207 LRLLDKETGKLL-KS---YKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTM 282 (307)
T ss_pred eeecccchhHHH-HH---hcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCc
Confidence 999999887532 12 134443 3445677777889999999999999999999999999988877 8999999998
Q ss_pred cEEEEeeC
Q 014125 367 PMAASSSG 374 (430)
Q Consensus 367 ~~l~s~~~ 374 (430)
..++++..
T Consensus 283 ~~f~~A~~ 290 (307)
T KOG0316|consen 283 DDFITATG 290 (307)
T ss_pred cceeEecC
Confidence 88888764
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=294.09 Aligned_cols=295 Identities=17% Similarity=0.262 Sum_probs=226.8
Q ss_pred cccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccC
Q 014125 56 SSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASD 135 (430)
Q Consensus 56 ~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 135 (430)
+..|.+.|++++|+|+|++||+|+.|+.|+||++........ ..........+...+.+++|.|.
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~----------~~~~~~~~~~~~~~v~~l~~~~~----- 543 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGR----------DIHYPVVELASRSKLSGICWNSY----- 543 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccc----------ccccceEEecccCceeeEEeccC-----
Confidence 456999999999999999999999999999999864211000 00011122334467899999542
Q ss_pred CCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECC-CCcEEEE-EcCCeEEEEEcCCCCCccccccc
Q 014125 136 PTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNP-TGTKIFA-GYNKSVRVFDVHRPGRDFEKYST 213 (430)
Q Consensus 136 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~ 213 (430)
++.+|++++.||+|++||+.+++.+..+..|.. .|++++|+| ++.+|++ +.|+.|++||++.... . ..
T Consensus 544 -~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~-----~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~-~---~~ 613 (793)
T PLN00181 544 -IKSQVASSNFEGVVQVWDVARSQLVTEMKEHEK-----RVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS-I---GT 613 (793)
T ss_pred -CCCEEEEEeCCCeEEEEECCCCeEEEEecCCCC-----CEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE-E---EE
Confidence 467899999999999999999988888877665 899999997 6777774 5899999999976421 1 11
Q ss_pred ccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCce-eeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEE
Q 014125 214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME-LLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILC 292 (430)
Q Consensus 214 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i 292 (430)
+ .. ...+.++.|++.++.+|++|+.||.|++||+++.+ ....+.+|...|.++.|. ++.+|++++ .|+.|++
T Consensus 614 ~----~~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s-~D~~iki 686 (793)
T PLN00181 614 I----KT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSS-TDNTLKL 686 (793)
T ss_pred E----ec-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEE-CCCEEEE
Confidence 1 11 24689999977678899999999999999998765 566778899999999997 678899999 9999999
Q ss_pred EeCCCCceE--EEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccc-------------ccccCCe
Q 014125 293 WDLRKAVQV--VYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGF-------------QAAADTV 357 (430)
Q Consensus 293 ~d~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-------------~~~~~~v 357 (430)
||++..... ...+....+|...+..++|+|++.+|++|+.|+.|++|+.....++..+ ..|...|
T Consensus 687 Wd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V 766 (793)
T PLN00181 687 WDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFI 766 (793)
T ss_pred EeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEE
Confidence 999753210 0112233578888999999999999999999999999998765443221 2345579
Q ss_pred eEEEEcCCCcEEEEeeCCceeeecC
Q 014125 358 NGFSFHPFLPMAASSSGHRRFPVDD 382 (430)
Q Consensus 358 ~~~~~~~~~~~l~s~~~d~~~~vw~ 382 (430)
.+++|+|++.+|++|+.||.|+||+
T Consensus 767 ~~v~ws~~~~~lva~~~dG~I~i~~ 791 (793)
T PLN00181 767 SSVCWRGQSSTLVAANSTGNIKILE 791 (793)
T ss_pred EEEEEcCCCCeEEEecCCCcEEEEe
Confidence 9999999999999998765555554
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-36 Score=262.65 Aligned_cols=335 Identities=18% Similarity=0.288 Sum_probs=269.1
Q ss_pred CCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCc
Q 014125 60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC 139 (430)
Q Consensus 60 ~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (430)
..+|.||.|||+|+++|.|... .+.||..+..... .+.. -.......+|-..|.++.| +.|.+
T Consensus 96 k~~v~~i~fSPng~~fav~~gn-~lqiw~~P~~~~~-~~~p--------Fvl~r~~~g~fddi~si~W-------s~DSr 158 (893)
T KOG0291|consen 96 KRGVGAIKFSPNGKFFAVGCGN-LLQIWHAPGEIKN-EFNP--------FVLHRTYLGHFDDITSIDW-------SDDSR 158 (893)
T ss_pred cCccceEEECCCCcEEEEEecc-eeEEEecCcchhc-ccCc--------ceEeeeecCCccceeEEEe-------ccCCc
Confidence 5689999999999999987764 8999998754221 1111 1122345567789999999 88999
Q ss_pred eEEEEeCCCcEEEEeccCCcee--eeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCccc-------
Q 014125 140 VFASTTRDHPIHLWDATTGLLR--CTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFE------- 209 (430)
Q Consensus 140 ~l~~~~~dg~i~vwd~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~------- 209 (430)
+|++|++|-++++|.+...+.. ..+..|. ..|.+.-|..+...++ .+.||.+.+|..........
T Consensus 159 ~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHk-----d~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~e 233 (893)
T KOG0291|consen 159 LLVTGSRDLSARLFGVDGNKNLFTYALNGHK-----DYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEE 233 (893)
T ss_pred eEEeccccceEEEEEeccccccceEeccCCC-----cceEEEEeccCcceEEEEecCceEEEEEecCCCccccccccccc
Confidence 9999999999999999876653 3333333 4888999998887777 78999999998873211000
Q ss_pred ------------------ccccc-cCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEE
Q 014125 210 ------------------KYSTL-KGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTH 270 (430)
Q Consensus 210 ------------------~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~ 270 (430)
..... +..+......+++.+|++ +.++|++|-.+|...+|.+....+++.+.-...+|..
T Consensus 234 g~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~-~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t 312 (893)
T KOG0291|consen 234 GSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHK-GTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILT 312 (893)
T ss_pred ccccccccccchhhhcceEEEEEEeeeecccccceeeeeccC-CceEEEEEecCCeeEEEecCCceEEEEeecccceeeE
Confidence 00001 111122336799999999 8999999999999999999999999999877789999
Q ss_pred EEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccc
Q 014125 271 VQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGF 350 (430)
Q Consensus 271 ~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 350 (430)
++|+..|.+|+.+++.=|.+-+|+.+...-.. ...+|...+++++++|||+++|+|++||.|+|||..++-++.+|
T Consensus 313 ~~~N~tGDWiA~g~~klgQLlVweWqsEsYVl----KQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTF 388 (893)
T KOG0291|consen 313 VSFNSTGDWIAFGCSKLGQLLVWEWQSESYVL----KQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTF 388 (893)
T ss_pred EEecccCCEEEEcCCccceEEEEEeeccceee----eccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEe
Confidence 99999999999999677899999998764333 33689999999999999999999999999999999999999999
Q ss_pred ccccCCeeEEEEcCCCcEEEEeeCCceeeecCCCc-------------------------ccccc-CC-CcEEEEeeccc
Q 014125 351 QAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFED-------------------------LHLSG-DE-NCVSVWSFLYA 403 (430)
Q Consensus 351 ~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~-------------------------l~~~~-~d-~~i~~w~~~~~ 403 (430)
..|.+.|+.+.|+..++.+++++-||+|+.||... ++.+| .| =.|.+|++.++
T Consensus 389 teHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTG 468 (893)
T KOG0291|consen 389 TEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTG 468 (893)
T ss_pred ccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecC
Confidence 99999999999999999999999999999997643 33333 33 36999999999
Q ss_pred ccccccCCCCcceeeeecc
Q 014125 404 SMMENADGINGCEFNCQSE 422 (430)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~ 422 (430)
+++..+.||.+ ++.+++.
T Consensus 469 qllDiLsGHEg-PVs~l~f 486 (893)
T KOG0291|consen 469 QLLDILSGHEG-PVSGLSF 486 (893)
T ss_pred eeeehhcCCCC-cceeeEE
Confidence 99999999999 6565443
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-37 Score=262.80 Aligned_cols=309 Identities=18% Similarity=0.229 Sum_probs=263.7
Q ss_pred ecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCcc
Q 014125 55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS 134 (430)
Q Consensus 55 ~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 134 (430)
.+..|++.|.++.|+|...+++++-..|.|.||+.++..++..+..+. .+|++..|.
T Consensus 8 k~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~-----------------~PvRa~kfi------ 64 (794)
T KOG0276|consen 8 KFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSE-----------------VPVRAAKFI------ 64 (794)
T ss_pred HhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecc-----------------cchhhheee------
Confidence 455689999999999999999999999999999999876655544433 578888884
Q ss_pred CCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCccccccc
Q 014125 135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYST 213 (430)
Q Consensus 135 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~ 213 (430)
+..+.+++|+.|..|+||+..+++.+..+..|.. -|.+++.+|...+++++ .|-.|++||.+.. -.
T Consensus 65 -aRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~D-----yIR~iavHPt~P~vLtsSDDm~iKlW~we~~-------wa 131 (794)
T KOG0276|consen 65 -ARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSD-----YIRSIAVHPTLPYVLTSSDDMTIKLWDWENE-------WA 131 (794)
T ss_pred -eccceEEEecCCceEEEEecccceeeEEeecccc-----ceeeeeecCCCCeEEecCCccEEEEeeccCc-------ee
Confidence 3577999999999999999999999999999887 89999999999999955 8899999999763 34
Q ss_pred ccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCC--CEEEEEecCCCeEE
Q 014125 214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDG--NYLYTGGRKDPYIL 291 (430)
Q Consensus 214 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~~d~~i~ 291 (430)
..+.+.+|...|.+++|+|.+.+.+++++-|++|++|.+.+..+..++++|...|+++.|-+.| .+|++++ .|..|+
T Consensus 132 ~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsga-DD~tiK 210 (794)
T KOG0276|consen 132 CEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGA-DDLTIK 210 (794)
T ss_pred eeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecC-CCceEE
Confidence 4556689999999999999999999999999999999999999999999999999999998754 6999999 999999
Q ss_pred EEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEE
Q 014125 292 CWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAAS 371 (430)
Q Consensus 292 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 371 (430)
+||..+..+. ....+|...|..+.|+|.-.++++|++||+++||+..+.++..++....+.|++++-.+.+..++.
T Consensus 211 vWDyQtk~CV----~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~v 286 (794)
T KOG0276|consen 211 VWDYQTKSCV----QTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAV 286 (794)
T ss_pred EeecchHHHH----HHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEE
Confidence 9999987544 333789999999999999999999999999999999999999999888889999999999999999
Q ss_pred eeCCceeeecCCCccccccCCCc-EEEEeecccc
Q 014125 372 SSGHRRFPVDDFEDLHLSGDENC-VSVWSFLYAS 404 (430)
Q Consensus 372 ~~~d~~~~vw~~~~l~~~~~d~~-i~~w~~~~~~ 404 (430)
|...|.+.|--...-.+.+-|.. =-+|.....-
T Consensus 287 G~Deg~i~v~lgreeP~vsMd~~gKIiwa~~~ei 320 (794)
T KOG0276|consen 287 GFDEGSVTVKLGREEPAVSMDSNGKIIWAVHSEI 320 (794)
T ss_pred eccCCcEEEEccCCCCceeecCCccEEEEcCcee
Confidence 99999887763333222222322 2467655433
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-37 Score=272.10 Aligned_cols=247 Identities=21% Similarity=0.344 Sum_probs=210.7
Q ss_pred CCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCce--------eeee------------------eccccccc
Q 014125 119 GESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLL--------RCTY------------------RAYDAVDE 172 (430)
Q Consensus 119 ~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--------~~~~------------------~~~~~~~~ 172 (430)
...+.|..| ++++.+||.|..|..|++|.+...+. +... ....-.+|
T Consensus 378 ~~~v~ca~f-------SddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH 450 (707)
T KOG0263|consen 378 YQGVTCAEF-------SDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGH 450 (707)
T ss_pred CCcceeEee-------cCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecC
Confidence 345667766 88999999999999999999874221 0000 00011245
Q ss_pred ccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEE
Q 014125 173 ITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYR 251 (430)
Q Consensus 173 ~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d 251 (430)
.++|....|+|+.++|+ ++.|+++|+|.+.+. ...-...+|..+|..+.|+| .+.+||+++.|++-++|.
T Consensus 451 ~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~--------s~~V~y~GH~~PVwdV~F~P-~GyYFatas~D~tArLWs 521 (707)
T KOG0263|consen 451 SGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTW--------SCLVIYKGHLAPVWDVQFAP-RGYYFATASHDQTARLWS 521 (707)
T ss_pred CCceeeeeecccccceeeccCCcceeeeecccc--------eeEEEecCCCcceeeEEecC-CceEEEecCCCceeeeee
Confidence 66999999999999999 558999999999873 22223469999999999999 788999999999999999
Q ss_pred cCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEc
Q 014125 252 EDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGG 331 (430)
Q Consensus 252 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 331 (430)
.....+++.+.+|-+.|.|+.|+|+..|+++|+ .|.+||+||+.++..+. . + .+|..+|.+++|||+|++|++|+
T Consensus 522 ~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGS-sD~tVRlWDv~~G~~VR-i-F--~GH~~~V~al~~Sp~Gr~LaSg~ 596 (707)
T KOG0263|consen 522 TDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGS-SDRTVRLWDVSTGNSVR-I-F--TGHKGPVTALAFSPCGRYLASGD 596 (707)
T ss_pred cccCCchhhhcccccccceEEECCcccccccCC-CCceEEEEEcCCCcEEE-E-e--cCCCCceEEEEEcCCCceEeecc
Confidence 999999999999999999999999999999998 99999999999986542 2 2 68999999999999999999999
Q ss_pred cCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCCCcc
Q 014125 332 QDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFEDL 386 (430)
Q Consensus 332 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~l 386 (430)
.||.|.+||+.+++++..+.+|.+.|.++.|+.+|..||+++.|..|++||....
T Consensus 597 ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 597 EDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred cCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 9999999999999999999999999999999999999999998777777765543
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-36 Score=263.97 Aligned_cols=335 Identities=16% Similarity=0.266 Sum_probs=256.8
Q ss_pred eeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccC
Q 014125 53 FRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS 132 (430)
Q Consensus 53 ~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 132 (430)
.-++.||...|+++.|...|..||+||.|+.|.+||+-...-.. ...+|...|+..-|
T Consensus 100 ~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~-----------------rL~GHkd~iT~~~F----- 157 (888)
T KOG0306|consen 100 LITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLF-----------------RLRGHKDSITQALF----- 157 (888)
T ss_pred eeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeE-----------------EeecchHHHhHHhc-----
Confidence 34788999999999999999999999999999999996442222 23345567777777
Q ss_pred ccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCc-----
Q 014125 133 ASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRD----- 207 (430)
Q Consensus 133 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~----- 207 (430)
..+.+.+++.+.|+.|++||+++..+..+.-.+.. .++++++.+ ...++++.|+.+++|++..+...
T Consensus 158 --~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~-----Eiw~l~~~~-~~lvt~~~dse~~v~~L~~~~D~~~~~~ 229 (888)
T KOG0306|consen 158 --LNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRG-----EIWALVLDE-KLLVTAGTDSELKVWELAFEDDEKETNR 229 (888)
T ss_pred --cCCCeEEEEeccCceEEEEecccceeeeEEecccc-----eEEEEEEec-ceEEEEecCCceEEEEeecccccccccc
Confidence 44678999999999999999999988887766655 999999987 34445679999999998211000
Q ss_pred ------------------cc------------------------------------------------------------
Q 014125 208 ------------------FE------------------------------------------------------------ 209 (430)
Q Consensus 208 ------------------~~------------------------------------------------------------ 209 (430)
..
T Consensus 230 ~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~ 309 (888)
T KOG0306|consen 230 YISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSD 309 (888)
T ss_pred cceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHH
Confidence 00
Q ss_pred -------------------------c---------------ccc--c---------cCCCCCCCcceEEEEEcCCCCceE
Q 014125 210 -------------------------K---------------YST--L---------KGNKEGQAGIMSAIAFSPTHTGML 238 (430)
Q Consensus 210 -------------------------~---------------~~~--~---------~~~~~~~~~~v~~~~~~~~~~~~l 238 (430)
. ... . .....+|...|++++++. +. .+
T Consensus 310 ~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~-d~-~~ 387 (888)
T KOG0306|consen 310 EIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSS-DS-IL 387 (888)
T ss_pred HHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeec-Cc-ee
Confidence 0 000 0 012346777788888876 33 33
Q ss_pred EEecCCCeEEEEEcCCceeeE----------------------------------------EeeccccCeEEEEEccCCC
Q 014125 239 AIGSYSQTSAIYREDNMELLY----------------------------------------VLHGQEGGVTHVQFSRDGN 278 (430)
Q Consensus 239 ~~~~~dg~v~~~d~~~~~~~~----------------------------------------~~~~~~~~i~~~~~~~~~~ 278 (430)
+..+..+.+++|+..+.++++ .+++|.+.|.+++.+||++
T Consensus 388 ~~Sga~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~ 467 (888)
T KOG0306|consen 388 LASGAGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNK 467 (888)
T ss_pred eeecCCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCC
Confidence 333345667777766554443 3356899999999999999
Q ss_pred EEEEEecCCCeEEEEeCCCCce------EEEEe--ecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccc
Q 014125 279 YLYTGGRKDPYILCWDLRKAVQ------VVYKL--YRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGF 350 (430)
Q Consensus 279 ~l~~~~~~d~~i~i~d~~~~~~------~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 350 (430)
.+++++ .|.+|++||..-... ....+ .+...-...|.++.+||||++|+++--|++|+||-+++-+..-.+
T Consensus 468 g~vT~s-aDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsL 546 (888)
T KOG0306|consen 468 GFVTGS-ADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSL 546 (888)
T ss_pred ceEEec-CCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeee
Confidence 999999 999999999742111 10111 111234678999999999999999999999999999999999999
Q ss_pred ccccCCeeEEEEcCCCcEEEEeeCCceeeecCCCc-------------------------cccccCCCcEEEEeeccccc
Q 014125 351 QAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFED-------------------------LHLSGDENCVSVWSFLYASM 405 (430)
Q Consensus 351 ~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~-------------------------l~~~~~d~~i~~w~~~~~~~ 405 (430)
.||.-||.++..+||+++++|||.|..|+||..+. +.++|.|+.|+.||-..-+.
T Consensus 547 YGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~ 626 (888)
T KOG0306|consen 547 YGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEE 626 (888)
T ss_pred cccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhh
Confidence 99999999999999999999999999999995432 78999999999999999999
Q ss_pred ccccCCCCcceeeeec
Q 014125 406 MENADGINGCEFNCQS 421 (430)
Q Consensus 406 ~~~~~~~~~~~~~~~~ 421 (430)
+..+.+|.. ++-|..
T Consensus 627 iq~L~~H~~-ev~cLa 641 (888)
T KOG0306|consen 627 IQKLDGHHS-EVWCLA 641 (888)
T ss_pred heeeccchh-eeeeeE
Confidence 999999988 444443
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-38 Score=255.58 Aligned_cols=256 Identities=19% Similarity=0.291 Sum_probs=223.3
Q ss_pred CeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEE
Q 014125 120 ESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRV 198 (430)
Q Consensus 120 ~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v 198 (430)
.+|..++| .|+|+.|++|+..|.+.+|+..+-.....++.|.. +|.++.|++++.++++| .+|.|++
T Consensus 97 c~V~~v~W-------tPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs-----~Vr~m~ws~~g~wmiSgD~gG~iKy 164 (464)
T KOG0284|consen 97 CPVNVVRW-------TPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDS-----PVRTMKWSHNGTWMISGDKGGMIKY 164 (464)
T ss_pred cceeeEEE-------cCCCceeEeecccccEEEecCceeeHHHHhhhhcc-----cceeEEEccCCCEEEEcCCCceEEe
Confidence 58999999 77999999999999999999855444444555554 99999999999999977 8899999
Q ss_pred EEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCC
Q 014125 199 FDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGN 278 (430)
Q Consensus 199 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~ 278 (430)
|+.... ..+.....|...|++++|+| ....|++++.||+|+|||....+....+.+|.-.|.+++|+|...
T Consensus 165 Wqpnmn--------nVk~~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kg 235 (464)
T KOG0284|consen 165 WQPNMN--------NVKIIQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKG 235 (464)
T ss_pred cccchh--------hhHHhhHhhhhhhheeccCC-CCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccc
Confidence 998652 22223345558899999999 667999999999999999999988888999999999999999999
Q ss_pred EEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCee
Q 014125 279 YLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVN 358 (430)
Q Consensus 279 ~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~ 358 (430)
.|++++ .|..|++||.+++.++. ....|...|..+.|+|++++|+++|.|..++++|+++.+.+..+++|...|+
T Consensus 236 Liasgs-kDnlVKlWDprSg~cl~----tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~ 310 (464)
T KOG0284|consen 236 LIASGS-KDNLVKLWDPRSGSCLA----TLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVT 310 (464)
T ss_pred eeEEcc-CCceeEeecCCCcchhh----hhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhhe
Confidence 999999 99999999999986553 3368999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCc-EEEEeeCCceeeecCCCc--------------------------cccccCCCcEEEEeec
Q 014125 359 GFSFHPFLP-MAASSSGHRRFPVDDFED--------------------------LHLSGDENCVSVWSFL 401 (430)
Q Consensus 359 ~~~~~~~~~-~l~s~~~d~~~~vw~~~~--------------------------l~~~~~d~~i~~w~~~ 401 (430)
++.|+|-.. +|.+++.||.|..|.... |++++.|.++++|.-.
T Consensus 311 ~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 311 SLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred eeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 999999554 888999999999984331 8899999999999664
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=249.62 Aligned_cols=279 Identities=18% Similarity=0.321 Sum_probs=228.2
Q ss_pred cCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCC
Q 014125 58 IPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT 137 (430)
Q Consensus 58 ~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 137 (430)
.....|+|+.+. ...+++|..|.+|+|||..+.... ....+|.+.|.|+.| +
T Consensus 195 e~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~-----------------~~L~GHtGSVLCLqy---------d 246 (499)
T KOG0281|consen 195 ENSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECL-----------------KILTGHTGSVLCLQY---------D 246 (499)
T ss_pred ccCCceEEEEec--chhhhcccccCceEEeccccHHHH-----------------HhhhcCCCcEEeeec---------c
Confidence 356779999985 468999999999999998865433 245567799999999 6
Q ss_pred CceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccCC
Q 014125 138 SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGN 217 (430)
Q Consensus 138 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~ 217 (430)
.+.+++|+.|.+|++||+++++++.++-.|.. .|..+.|+ +|-.+.++.|.++.+||+..+.. ..+...
T Consensus 247 ~rviisGSSDsTvrvWDv~tge~l~tlihHce-----aVLhlrf~-ng~mvtcSkDrsiaVWdm~sps~-----it~rrV 315 (499)
T KOG0281|consen 247 ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCE-----AVLHLRFS-NGYMVTCSKDRSIAVWDMASPTD-----ITLRRV 315 (499)
T ss_pred ceEEEecCCCceEEEEeccCCchhhHHhhhcc-----eeEEEEEe-CCEEEEecCCceeEEEeccCchH-----HHHHHH
Confidence 77999999999999999999999988877765 89999996 44444477999999999987542 334445
Q ss_pred CCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCC
Q 014125 218 KEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRK 297 (430)
Q Consensus 218 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~ 297 (430)
+.+|...|..+.|+. +++++++.|.+|++|++.+++.++++.+|...|.|+.+ .++++++|+ .|.+|++||+..
T Consensus 316 LvGHrAaVNvVdfd~---kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGS-SDntIRlwdi~~ 389 (499)
T KOG0281|consen 316 LVGHRAAVNVVDFDD---KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGS-SDNTIRLWDIEC 389 (499)
T ss_pred Hhhhhhheeeecccc---ceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecC-CCceEEEEeccc
Confidence 578999999999954 49999999999999999999999999999999999998 678888888 999999999998
Q ss_pred CceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCC---------eecccccccCCeeEEEEcCCCcE
Q 014125 298 AVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGK---------WISGFQAAADTVNGFSFHPFLPM 368 (430)
Q Consensus 298 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~ 368 (430)
+... ....+|..-|.++.|. .+.+++|+.||.|+|||+..+. ++..+..|.+.|..+.|..
T Consensus 390 G~cL----RvLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~---- 459 (499)
T KOG0281|consen 390 GACL----RVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDE---- 459 (499)
T ss_pred cHHH----HHHhchHHhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecc----
Confidence 8543 2236899999999996 5789999999999999998754 3455667888999999842
Q ss_pred EEEeeCCceeeecCCCccccccCCCcEEEEeecccccc
Q 014125 369 AASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYASMM 406 (430)
Q Consensus 369 l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~~~ 406 (430)
-+++++++|.+|-+|||..+..-
T Consensus 460 ---------------fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 460 ---------------FQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred ---------------eEEEeccCCCeEEEEEcCCCCcc
Confidence 33444557888999988755443
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=228.39 Aligned_cols=297 Identities=17% Similarity=0.327 Sum_probs=241.2
Q ss_pred eecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCc
Q 014125 54 RTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (430)
Q Consensus 54 ~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (430)
+.+.+|...|.+++|+.+|..|++|+.|+++.+|+++..+.. ......+|+..|-.++|.|.
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~---------------~~~~~~gh~~svdql~w~~~--- 75 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFR---------------KELVYRGHTDSVDQLCWDPK--- 75 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhh---------------hhhcccCCCcchhhheeCCC---
Confidence 577899999999999999999999999999999999865322 12233457778999999875
Q ss_pred cCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccccc
Q 014125 134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYS 212 (430)
Q Consensus 134 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~ 212 (430)
...+|++++.|.+|++||...+++........ .=.-+.|+|+|.+++++ .|..|.+.|.++...
T Consensus 76 ---~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~------eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~------ 140 (313)
T KOG1407|consen 76 ---HPDLFATASGDKTIRIWDIRSGKCTARIETKG------ENINITWSPDGEYIAVGNKDDRITFIDARTYKI------ 140 (313)
T ss_pred ---CCcceEEecCCceEEEEEeccCcEEEEeeccC------cceEEEEcCCCCEEEEecCcccEEEEEecccce------
Confidence 44589999999999999999999988776544 22368899999999966 899999999876321
Q ss_pred cccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEE
Q 014125 213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILC 292 (430)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i 292 (430)
.. .......+..++|+- .+.+++.....|.|.|.....-+++..+++|.....||.|+|+|+++++|+ .|-.+.+
T Consensus 141 --~~-~~~~~~e~ne~~w~~-~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~Gs-ADAlvSL 215 (313)
T KOG1407|consen 141 --VN-EEQFKFEVNEISWNN-SNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGS-ADALVSL 215 (313)
T ss_pred --ee-hhcccceeeeeeecC-CCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeecc-ccceeec
Confidence 11 112234577888885 666777777789999999999999999999999999999999999999999 9999999
Q ss_pred EeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEe
Q 014125 293 WDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASS 372 (430)
Q Consensus 293 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 372 (430)
||+...-... ....+.-+|..++|+.+|++||+|++|..|-|-++.+|..+..++ +.++...++|+|...+||-+
T Consensus 216 WD~~ELiC~R----~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA 290 (313)
T KOG1407|consen 216 WDVDELICER----CISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYA 290 (313)
T ss_pred cChhHhhhhe----eeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEE
Confidence 9998753331 224577889999999999999999999999999999999999988 78899999999999999999
Q ss_pred eCCceeeecCCCccccccCCCcEEEEeec
Q 014125 373 SGHRRFPVDDFEDLHLSGDENCVSVWSFL 401 (430)
Q Consensus 373 ~~d~~~~vw~~~~l~~~~~d~~i~~w~~~ 401 (430)
+.|..= -+.-+-|.++++-+.
T Consensus 291 ~ddk~~--------d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 291 CDDKDG--------DSNREAGTVKIFGLS 311 (313)
T ss_pred ecCCCC--------ccccccceeEEecCC
Confidence 876421 111234677776543
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-36 Score=242.31 Aligned_cols=296 Identities=19% Similarity=0.282 Sum_probs=236.6
Q ss_pred ccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCC
Q 014125 57 SIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP 136 (430)
Q Consensus 57 ~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 136 (430)
..|.+.|.++... +++++||++||.++|||... .......+|.++|.+++|... ++
T Consensus 102 ~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~G------------------k~~~~~~Ght~~ik~v~~v~~----n~ 157 (423)
T KOG0313|consen 102 FLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKG------------------KSIKTIVGHTGPIKSVAWVIK----NS 157 (423)
T ss_pred ccchhhhhhhccc--CceEEEeecCCeeEEEecCC------------------ceEEEEecCCcceeeeEEEec----CC
Confidence 3689999999988 68999999999999999873 345567788899999999654 44
Q ss_pred CCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCC-ccc-----
Q 014125 137 TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGR-DFE----- 209 (430)
Q Consensus 137 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~-~~~----- 209 (430)
....|++++.|.++++|.++.+......... ..+|...|-++...+++..+++ +.|.+|.+|+...... ..+
T Consensus 158 ~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~-~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~ 236 (423)
T KOG0313|consen 158 SSCLFVSASMDQTLRLWKWNVGENKVKALKV-CRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNR 236 (423)
T ss_pred ccceEEEecCCceEEEEEecCchhhhhHHhH-hcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchh
Confidence 4558999999999999999877543221111 1134458999999999999985 5999999999332111 111
Q ss_pred -----------ccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCC
Q 014125 210 -----------KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGN 278 (430)
Q Consensus 210 -----------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~ 278 (430)
....+...+.+|..+|.++.|++ ...+.+++.|.+|+.||+.++.....+. -...++++..+|..+
T Consensus 237 rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~~~~~~-~~ksl~~i~~~~~~~ 313 (423)
T KOG0313|consen 237 RRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGLKSTLT-TNKSLNCISYSPLSK 313 (423)
T ss_pred hhhhhhhhhcccccCceEEecccccceeeEEEcC--CCceEeecccceEEEEEeecccceeeee-cCcceeEeecccccc
Confidence 11122334578999999999997 4589999999999999999999887777 356899999999999
Q ss_pred EEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCC-EEEEEccCCcEEEEEcCCCC-eecccccccCC
Q 014125 279 YLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGR-HLGTGGQDGLVHIYDLQTGK-WISGFQAAADT 356 (430)
Q Consensus 279 ~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~ 356 (430)
+|++++ .|..+++||.+++...+ ......+|.+.|.++.|+|... .|++|+.||++++||+++.+ +++.+.+|.+.
T Consensus 314 Ll~~gs-sdr~irl~DPR~~~gs~-v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DK 391 (423)
T KOG0313|consen 314 LLASGS-SDRHIRLWDPRTGDGSV-VSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDK 391 (423)
T ss_pred eeeecC-CCCceeecCCCCCCCce-eEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCce
Confidence 999999 99999999999875433 3344578999999999999765 58899999999999999887 99999999999
Q ss_pred eeEEEEcCCCcEEEEeeCCceeeecCC
Q 014125 357 VNGFSFHPFLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 357 v~~~~~~~~~~~l~s~~~d~~~~vw~~ 383 (430)
|.++.|. ++.++++|+.|..++|+..
T Consensus 392 vl~vdW~-~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 392 VLSVDWN-EGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred EEEEecc-CCceEEeccCcceEEEecc
Confidence 9999998 4678888887777776543
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=244.51 Aligned_cols=312 Identities=17% Similarity=0.165 Sum_probs=251.6
Q ss_pred eeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccC
Q 014125 53 FRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS 132 (430)
Q Consensus 53 ~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 132 (430)
...+..|...++-..|||.|.|+|+|...|.|||||...... ........-.++|.+++|
T Consensus 52 ~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~h---------------iLKnef~v~aG~I~Di~W----- 111 (603)
T KOG0318|consen 52 VDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEH---------------ILKNEFQVLAGPIKDISW----- 111 (603)
T ss_pred eeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcce---------------eeeeeeeeccccccccee-----
Confidence 457899999999999999999999999999999999875321 111222233479999999
Q ss_pred ccCCCCceEEEEeCC--CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcE-EE-EEcCCeEEEEEcCCCCCcc
Q 014125 133 ASDPTSCVFASTTRD--HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTK-IF-AGYNKSVRVFDVHRPGRDF 208 (430)
Q Consensus 133 ~~~~~~~~l~~~~~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~-~~~d~~i~v~d~~~~~~~~ 208 (430)
+.+++++++.++. +..+++-.++|..+..+.+|.. .|.++.|-|...+ ++ ++.|+.|.+|+= +++
T Consensus 112 --d~ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr-----~ins~~~KpsRPfRi~T~sdDn~v~ffeG----PPF 180 (603)
T KOG0318|consen 112 --DFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHSR-----RINSVDFKPSRPFRIATGSDDNTVAFFEG----PPF 180 (603)
T ss_pred --CCCCcEEEEEecCccceeEEEEecCCCccceeeccce-----eEeeeeccCCCceEEEeccCCCeEEEeeC----CCe
Confidence 7788888877553 3344444447777788887776 8999999998754 44 558999999973 333
Q ss_pred cccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEee---ccccCeEEEEEccCCCEEEEEec
Q 014125 209 EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH---GQEGGVTHVQFSRDGNYLYTGGR 285 (430)
Q Consensus 209 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~ 285 (430)
.+......|...|.++.|+| ++.++++.+.||+|.+||-.+++.+..+. +|.+.|.+++|+||++.+++++
T Consensus 181 ----KFk~s~r~HskFV~~VRysP-DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~S- 254 (603)
T KOG0318|consen 181 ----KFKSSFREHSKFVNCVRYSP-DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVS- 254 (603)
T ss_pred ----eeeecccccccceeeEEECC-CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEec-
Confidence 34455578888999999999 57799999999999999999999999988 8999999999999999999999
Q ss_pred CCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCC
Q 014125 286 KDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPF 365 (430)
Q Consensus 286 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 365 (430)
.|.+++|||+.+..... .+.....-......+.|. +..|++.+.+|.|.+++.....++..+.+|...|+++..+|+
T Consensus 255 aDkt~KIWdVs~~slv~-t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d 331 (603)
T KOG0318|consen 255 ADKTIKIWDVSTNSLVS-TWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPD 331 (603)
T ss_pred CCceEEEEEeeccceEE-EeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCC
Confidence 99999999999884433 322212223445556675 568999999999999999999999999999999999999999
Q ss_pred CcEEEEeeCCceeeecCC-------------------------CccccccCCCcEEEEeecccc
Q 014125 366 LPMAASSSGHRRFPVDDF-------------------------EDLHLSGDENCVSVWSFLYAS 404 (430)
Q Consensus 366 ~~~l~s~~~d~~~~vw~~-------------------------~~l~~~~~d~~i~~w~~~~~~ 404 (430)
+.+|.+|+.||.|.-|+. ..++++|.|.++++-++..+.
T Consensus 332 ~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~ 395 (603)
T KOG0318|consen 332 GKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNG 395 (603)
T ss_pred CCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCc
Confidence 999999999999999943 237888899999999775433
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-36 Score=239.78 Aligned_cols=261 Identities=18% Similarity=0.298 Sum_probs=231.1
Q ss_pred eeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE
Q 014125 113 SLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG 191 (430)
Q Consensus 113 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~ 191 (430)
.+...|-+.|.++++ .|.+..|++|+.|++|+|||+.+|+...++.++.. .|..+++++...+++ ++
T Consensus 145 rVi~gHlgWVr~vav-------dP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~-----~vr~vavS~rHpYlFs~g 212 (460)
T KOG0285|consen 145 RVISGHLGWVRSVAV-------DPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIE-----TVRGVAVSKRHPYLFSAG 212 (460)
T ss_pred hhhhhccceEEEEee-------CCCceeEEecCCCceeEEEEcccCeEEEeecchhh-----eeeeeeecccCceEEEec
Confidence 455678899999999 66788999999999999999999999999887665 899999999999999 56
Q ss_pred cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEE
Q 014125 192 YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHV 271 (430)
Q Consensus 192 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~ 271 (430)
.|+.|+.||+.. ..+.....+|-..|.+++.+| .-..|++|+.|.++++||+++...+..+.+|..+|.++
T Consensus 213 edk~VKCwDLe~--------nkvIR~YhGHlS~V~~L~lhP-Tldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V 283 (460)
T KOG0285|consen 213 EDKQVKCWDLEY--------NKVIRHYHGHLSGVYCLDLHP-TLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASV 283 (460)
T ss_pred CCCeeEEEechh--------hhhHHHhccccceeEEEeccc-cceeEEecCCcceEEEeeecccceEEEecCCCCcceeE
Confidence 999999999987 345556689999999999999 66799999999999999999999999999999999999
Q ss_pred EEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccc
Q 014125 272 QFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQ 351 (430)
Q Consensus 272 ~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 351 (430)
.+.|-...+++++ .|++|++||++.++..... ..|...+.+++.+|....+|+++.|+ |+-|++..|..+..+.
T Consensus 284 ~~~~~dpqvit~S-~D~tvrlWDl~agkt~~tl----t~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nls 357 (460)
T KOG0285|consen 284 MCQPTDPQVITGS-HDSTVRLWDLRAGKTMITL----THHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLS 357 (460)
T ss_pred EeecCCCceEEec-CCceEEEeeeccCceeEee----ecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhccc
Confidence 9999888999999 9999999999998655433 46888899999999999999999885 9999999999999999
Q ss_pred cccCCeeEEEEcCCCcEEEEeeCCceeeecCCCc---------------------------------cccccCCCcEEEE
Q 014125 352 AAADTVNGFSFHPFLPMAASSSGHRRFPVDDFED---------------------------------LHLSGDENCVSVW 398 (430)
Q Consensus 352 ~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~---------------------------------l~~~~~d~~i~~w 398 (430)
+|..-|+.++...| .++++|+.+|.+.+||-.. |+++..|.+|++|
T Consensus 358 gh~~iintl~~nsD-~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~ 436 (460)
T KOG0285|consen 358 GHNAIINTLSVNSD-GVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMY 436 (460)
T ss_pred cccceeeeeeeccC-ceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEE
Confidence 99999999998765 4788899999999995432 7888899999999
Q ss_pred eec
Q 014125 399 SFL 401 (430)
Q Consensus 399 ~~~ 401 (430)
.-.
T Consensus 437 keD 439 (460)
T KOG0285|consen 437 KED 439 (460)
T ss_pred ecc
Confidence 543
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=259.68 Aligned_cols=299 Identities=20% Similarity=0.308 Sum_probs=246.2
Q ss_pred ceeecccCCCceeEEEE-CcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccc
Q 014125 52 QFRTSSIPNNFLKGIKW-SPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH 130 (430)
Q Consensus 52 ~~~~~~~h~~~v~~~~~-sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 130 (430)
..+.+.|..+.|.+++| .|+.++||.++..+.+|+|++.+.. ..+..+|...|.++.-
T Consensus 315 i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~------------------c~ii~GH~e~vlSL~~--- 373 (775)
T KOG0319|consen 315 IVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSY------------------CQIIPGHTEAVLSLDV--- 373 (775)
T ss_pred EehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCc------------------eEEEeCchhheeeeee---
Confidence 34567788999999998 5678899999999999999887542 2366778889999983
Q ss_pred cCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCc-EEE-EEcCCeEEEEEcCCCCCcc
Q 014125 131 MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGT-KIF-AGYNKSVRVFDVHRPGRDF 208 (430)
Q Consensus 131 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~-~~~d~~i~v~d~~~~~~~~ 208 (430)
..+|-+|++|+.|.++++|.++.+..... .......|...|.+++++..+. +++ ++.|.++++|++.......
T Consensus 374 ----~~~g~llat~sKD~svilWr~~~~~~~~~-~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~ 448 (775)
T KOG0319|consen 374 ----WSSGDLLATGSKDKSVILWRLNNNCSKSL-CVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETA 448 (775)
T ss_pred ----cccCcEEEEecCCceEEEEEecCCcchhh-hhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCccccc
Confidence 23567999999999999998854432211 1112223444888999977664 455 5699999999998732211
Q ss_pred c-ccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCC
Q 014125 209 E-KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKD 287 (430)
Q Consensus 209 ~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d 287 (430)
. ...........|...|++++++| +..++|+|+.|.+.++|++........+.+|...|.++.|+|..+.+++++ .|
T Consensus 449 ~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~S-gD 526 (775)
T KOG0319|consen 449 FPIVLTCRYTERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCS-GD 526 (775)
T ss_pred ccceehhhHHHHhhcccccceEecC-CCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEecc-CC
Confidence 1 11112223457888999999999 778999999999999999999999999999999999999999999999999 99
Q ss_pred CeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCc
Q 014125 288 PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLP 367 (430)
Q Consensus 288 ~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 367 (430)
++|+||.+.+.... .+..+|...|..+.|-.+|..|++++.||.|++|++.+++++.++.+|.+.|++++-+|...
T Consensus 527 ~TvKIW~is~fSCl----kT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~ 602 (775)
T KOG0319|consen 527 KTVKIWSISTFSCL----KTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLD 602 (775)
T ss_pred ceEEEEEeccceee----eeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccc
Confidence 99999999987543 23378999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeCCceeeecC
Q 014125 368 MAASSSGHRRFPVDD 382 (430)
Q Consensus 368 ~l~s~~~d~~~~vw~ 382 (430)
+++||+.||.+.+|.
T Consensus 603 ~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 603 MFVTGGGDGRIIFWK 617 (775)
T ss_pred eeEecCCCeEEEEee
Confidence 999999999999993
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=240.37 Aligned_cols=294 Identities=16% Similarity=0.255 Sum_probs=246.1
Q ss_pred cccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccC
Q 014125 56 SSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASD 135 (430)
Q Consensus 56 ~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 135 (430)
-.+....+-|..|||||+||++|+.||.|.+|+..++++..+++.. ....+..+..+|.|++| +
T Consensus 209 KFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQ---------Aqd~fMMmd~aVlci~F-------S 272 (508)
T KOG0275|consen 209 KFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQ---------AQDNFMMMDDAVLCISF-------S 272 (508)
T ss_pred ecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhh---------hhcceeecccceEEEee-------c
Confidence 3456677899999999999999999999999999998775544321 22244556789999999 8
Q ss_pred CCCceEEEEeCCCcEEEEeccCCceeeeee-cccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCccccccc
Q 014125 136 PTSCVFASTTRDHPIHLWDATTGLLRCTYR-AYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYST 213 (430)
Q Consensus 136 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~ 213 (430)
.|...|++|+.||.|++|.+.+|.+++.+. .|. ..|+++.|+.|+..++ ++.|.++++.-+..+ .
T Consensus 273 RDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHt-----kGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSG--------K 339 (508)
T KOG0275|consen 273 RDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHT-----KGVTCLSFSRDNSQILSASFDQTVRIHGLKSG--------K 339 (508)
T ss_pred ccHHHhhccCcCCcEEEEEEecchHHHHhhhhhc-----cCeeEEEEccCcchhhcccccceEEEeccccc--------h
Confidence 899999999999999999999999998887 333 3899999999998887 569999999998773 3
Q ss_pred ccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeecc--ccCeEEEEEccCC-CEEEEEecCCCeE
Q 014125 214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ--EGGVTHVQFSRDG-NYLYTGGRKDPYI 290 (430)
Q Consensus 214 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~--~~~i~~~~~~~~~-~~l~~~~~~d~~i 290 (430)
..+.+.+|.+.|+...|.+ +++.+++++.||+|++|+..+.+++.+++.. ..+|+++-.-|.+ ..++++. ..++|
T Consensus 340 ~LKEfrGHsSyvn~a~ft~-dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCN-rsntv 417 (508)
T KOG0275|consen 340 CLKEFRGHSSYVNEATFTD-DGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCN-RSNTV 417 (508)
T ss_pred hHHHhcCccccccceEEcC-CCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEc-CCCeE
Confidence 4455689999999999999 6779999999999999999999998888743 4578888877754 4677777 88999
Q ss_pred EEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEE
Q 014125 291 LCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAA 370 (430)
Q Consensus 291 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 370 (430)
++.++.. +.+..+.......+...++..+|.|.++.+.++|+.++.|.+.+|++...+..|+..|.+++-+|..++||
T Consensus 418 ~imn~qG--QvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllA 495 (508)
T KOG0275|consen 418 YIMNMQG--QVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLA 495 (508)
T ss_pred EEEeccc--eEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhh
Confidence 9998865 44444444444556677888999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCceeeecC
Q 014125 371 SSSGHRRFPVDD 382 (430)
Q Consensus 371 s~~~d~~~~vw~ 382 (430)
+-+.||.+++|.
T Consensus 496 sYsEDgllKLWk 507 (508)
T KOG0275|consen 496 SYSEDGLLKLWK 507 (508)
T ss_pred hhcccchhhhcC
Confidence 999877777773
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=231.27 Aligned_cols=281 Identities=19% Similarity=0.239 Sum_probs=233.4
Q ss_pred ecccCCCceeEEEECc---CCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecccc
Q 014125 55 TSSIPNNFLKGIKWSP---DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (430)
Q Consensus 55 ~~~~h~~~v~~~~~sp---~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (430)
+-.||+.+|-.++||| +|-+|++++.||.-.+-+=+++.... .+.+|.+.|+..+.
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwig-----------------tfeghkgavw~~~l---- 67 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIG-----------------TFEGHKGAVWSATL---- 67 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEE-----------------eeeccCcceeeeec----
Confidence 5679999999999986 89999999999987776665554332 34456688988877
Q ss_pred CccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCCcccc
Q 014125 132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFEK 210 (430)
Q Consensus 132 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~~~ 210 (430)
+.+....++++.|-+-++||.-+|..+..+.... -|.+++|+.|..+|++ |.++-++|||++.+..+.
T Consensus 68 ---~~na~~aasaaadftakvw~a~tgdelhsf~hkh------ivk~~af~~ds~~lltgg~ekllrvfdln~p~App-- 136 (334)
T KOG0278|consen 68 ---NKNATRAASAAADFTAKVWDAVTGDELHSFEHKH------IVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPP-- 136 (334)
T ss_pred ---Cchhhhhhhhcccchhhhhhhhhhhhhhhhhhhh------eeeeEEecccchhhhccchHHHhhhhhccCCCCCc--
Confidence 5566678899999999999999998887765432 7889999999999985 589999999998865433
Q ss_pred cccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeE
Q 014125 211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYI 290 (430)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i 290 (430)
....+|.+.|..+.|.. ..+.+++++.|++|++||.+++..++.+. ...+|+++.++++|++|.++ ..+.|
T Consensus 137 -----~E~~ghtg~Ir~v~wc~-eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia--~gssV 207 (334)
T KOG0278|consen 137 -----KEISGHTGGIRTVLWCH-EDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIA--YGSSV 207 (334)
T ss_pred -----hhhcCCCCcceeEEEec-cCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEe--cCcee
Confidence 33478999999999998 66788888999999999999999999987 56789999999999877655 58899
Q ss_pred EEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccc-ccccCCeeEEEEcCCCcEE
Q 014125 291 LCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGF-QAAADTVNGFSFHPFLPMA 369 (430)
Q Consensus 291 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l 369 (430)
.+||..+...+. . ......|.+.+++|+...+++|++|..++.||..+++.+..+ ++|.++|.++.|+|+|..-
T Consensus 208 ~Fwdaksf~~lK-s----~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~y 282 (334)
T KOG0278|consen 208 KFWDAKSFGLLK-S----YKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELY 282 (334)
T ss_pred EEecccccccee-e----ccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCcee
Confidence 999998764331 2 235567889999999999999999999999999999998886 8999999999999999999
Q ss_pred EEeeCCceeeec
Q 014125 370 ASSSGHRRFPVD 381 (430)
Q Consensus 370 ~s~~~d~~~~vw 381 (430)
++|+.||+|++|
T Consensus 283 AsGSEDGTirlW 294 (334)
T KOG0278|consen 283 ASGSEDGTIRLW 294 (334)
T ss_pred eccCCCceEEEE
Confidence 999854444444
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-36 Score=240.40 Aligned_cols=258 Identities=19% Similarity=0.302 Sum_probs=219.5
Q ss_pred eecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcC
Q 014125 115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYN 193 (430)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d 193 (430)
..++..+|+.+-| .|+-..++++++|++|++||..+++....+++|.. .+..++|+..|++++ ++.|
T Consensus 104 l~g~r~~vt~v~~-------hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~-----sv~di~~~a~Gk~l~tcSsD 171 (406)
T KOG0295|consen 104 LAGHRSSVTRVIF-------HPSEALVVSASEDATIKVFDTETGELERSLRGHTD-----SVFDISFDASGKYLATCSSD 171 (406)
T ss_pred hhccccceeeeee-------ccCceEEEEecCCceEEEEEccchhhhhhhhcccc-----ceeEEEEecCccEEEecCCc
Confidence 3446678888888 45667899999999999999999999888888876 799999999999999 5578
Q ss_pred CeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEE
Q 014125 194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQF 273 (430)
Q Consensus 194 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~ 273 (430)
-.+.+||.... ........+|...|.+++|-| .+..+++++.|.+|+.|+..++-++.++.+|...|..++.
T Consensus 172 l~~~LWd~~~~-------~~c~ks~~gh~h~vS~V~f~P-~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v 243 (406)
T KOG0295|consen 172 LSAKLWDFDTF-------FRCIKSLIGHEHGVSSVFFLP-LGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRV 243 (406)
T ss_pred cchhheeHHHH-------HHHHHHhcCcccceeeEEEEe-cCCeeeecccccceeEEecccceeEEeccCchHhEEEEEe
Confidence 78999998652 222333468888999999999 5689999999999999999999999999999999999999
Q ss_pred ccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCC---------------CCEEEEEccCCcEEE
Q 014125 274 SRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPS---------------GRHLGTGGQDGLVHI 338 (430)
Q Consensus 274 ~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------------~~~l~~~~~dg~i~v 338 (430)
+.||..+++++ .|.+|++|-+.+.... .....|..+|.+++|.|. +.++++++.|++|++
T Consensus 244 ~~DGti~As~s-~dqtl~vW~~~t~~~k----~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~ 318 (406)
T KOG0295|consen 244 NQDGTIIASCS-NDQTLRVWVVATKQCK----AELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKI 318 (406)
T ss_pred cCCeeEEEecC-CCceEEEEEeccchhh----hhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEE
Confidence 99999999999 9999999999876332 122567888888988762 369999999999999
Q ss_pred EEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCCCccccccCCCcEEEEeecccccccccCCCCc
Q 014125 339 YDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYASMMENADGING 414 (430)
Q Consensus 339 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~ 414 (430)
||+.++.++.++.+|...|.+++|+|.|++|+++.. |+++++||+...++|.++..|..
T Consensus 319 wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaD-----------------Dktlrvwdl~~~~cmk~~~ah~h 377 (406)
T KOG0295|consen 319 WDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCAD-----------------DKTLRVWDLKNLQCMKTLEAHEH 377 (406)
T ss_pred EeccCCeEEEEEecccceeeeeEEcCCCeEEEEEec-----------------CCcEEEEEeccceeeeccCCCcc
Confidence 999999999999999999999999999999999984 56666666666666666665544
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=232.75 Aligned_cols=313 Identities=14% Similarity=0.242 Sum_probs=238.9
Q ss_pred eeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccc-cccccCcccceeeecCCCeeeeeeecccc
Q 014125 53 FRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACS-LAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (430)
Q Consensus 53 ~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (430)
...+..|..++++.+|||||.++|||+.|..|+|.|++............ ...............|...|.++.|
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~F---- 180 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDF---- 180 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceee----
Confidence 45678999999999999999999999999999999987322211111111 1112223556677889999999999
Q ss_pred CccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccc
Q 014125 132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEK 210 (430)
Q Consensus 132 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~ 210 (430)
+|...+|++|+.|++|+++|.......+.++... ...+|.++.|+|.|.+|++| .-..+++||+++-..
T Consensus 181 ---HPre~ILiS~srD~tvKlFDfsK~saKrA~K~~q---d~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qc---- 250 (430)
T KOG0640|consen 181 ---HPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQ---DTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQC---- 250 (430)
T ss_pred ---cchhheEEeccCCCeEEEEecccHHHHHHHHHhh---ccceeeeEeecCCCceEEEecCCCceeEEeccceeE----
Confidence 5568899999999999999997655444444332 23389999999999999988 557899999987322
Q ss_pred cccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEee-cccc-CeEEEEEccCCCEEEEEecCCC
Q 014125 211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH-GQEG-GVTHVQFSRDGNYLYTGGRKDP 288 (430)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~-~~~~-~i~~~~~~~~~~~l~~~~~~d~ 288 (430)
+. .......|.+.|+++.+++ .+++.++|+.||.|++||--+++++.++. .|.+ .|.+..|..+|++++++| .|.
T Consensus 251 fv-sanPd~qht~ai~~V~Ys~-t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG-~DS 327 (430)
T KOG0640|consen 251 FV-SANPDDQHTGAITQVRYSS-TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSG-KDS 327 (430)
T ss_pred ee-ecCcccccccceeEEEecC-CccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecC-Ccc
Confidence 11 1123467889999999999 78899999999999999988888887765 4554 799999999999999999 999
Q ss_pred eEEEEeCCCCceEEEEeecc-cCCccceEEEEEcCCCCEEEEEcc-CCcEEEEEcCCCCeeccc-ccccCCeeEEEEcCC
Q 014125 289 YILCWDLRKAVQVVYKLYRS-SEHTNQRILFDIEPSGRHLGTGGQ-DGLVHIYDLQTGKWISGF-QAAADTVNGFSFHPF 365 (430)
Q Consensus 289 ~i~i~d~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~ 365 (430)
.+++|.+.++.......... .+....-+...|+....|++.-.+ .+.+.-||.++...+..+ .+|.+.++.+.-+|.
T Consensus 328 ~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~ 407 (430)
T KOG0640|consen 328 TVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPV 407 (430)
T ss_pred eeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCC
Confidence 99999999986553322110 111222345667777778776654 467999999998766555 479999999999999
Q ss_pred CcEEEEeeCCceeeecC
Q 014125 366 LPMAASSSGHRRFPVDD 382 (430)
Q Consensus 366 ~~~l~s~~~d~~~~vw~ 382 (430)
++.+++|+.|.+.++|-
T Consensus 408 ~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 408 EPAFMTCSDDFRARFWY 424 (430)
T ss_pred CCceeeecccceeeeee
Confidence 99999999877777774
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=222.77 Aligned_cols=288 Identities=19% Similarity=0.216 Sum_probs=226.2
Q ss_pred ecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCcc
Q 014125 55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS 134 (430)
Q Consensus 55 ~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 134 (430)
.++||..+++.|.|+.+|.+|.+|+.|.+..||--.+++.+. ...+|.+.|+++.-
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG-----------------ty~GHtGavW~~Di------- 60 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG-----------------TYDGHTGAVWCCDI------- 60 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee-----------------eecCCCceEEEEEe-------
Confidence 578999999999999999999999999999999765554332 34457789999987
Q ss_pred CCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEc------CCeEEEEEcCCCCCcc
Q 014125 135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGY------NKSVRVFDVHRPGRDF 208 (430)
Q Consensus 135 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------d~~i~v~d~~~~~~~~ 208 (430)
+.+...+++|+.|.++++||+++|+.+..++... +|..+.|+++|.+++.+. .+.|.++|++......
T Consensus 61 d~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~------~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~ 134 (327)
T KOG0643|consen 61 DWDSKHLITGSADQTAKLWDVETGKQLATWKTNS------PVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDI 134 (327)
T ss_pred cCCcceeeeccccceeEEEEcCCCcEEEEeecCC------eeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhh
Confidence 6688899999999999999999999999988765 899999999999988543 3679999998643221
Q ss_pred cccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCc-eeeEEeeccccCeEEEEEccCCCEEEEEecCC
Q 014125 209 EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-ELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKD 287 (430)
Q Consensus 209 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d 287 (430)
... .+......+...++.+.|.| -+..|++|.+||.|..||.+++ +.+...+.|...|+.++++|+..++++++ .|
T Consensus 135 ~s~-ep~~kI~t~~skit~a~Wg~-l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s-~D 211 (327)
T KOG0643|consen 135 DSE-EPYLKIPTPDSKITSALWGP-LGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGS-KD 211 (327)
T ss_pred ccc-CceEEecCCccceeeeeecc-cCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecc-cC
Confidence 111 11111234457899999999 7779999999999999999997 45666678999999999999999999999 99
Q ss_pred CeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEE--EEcCCC------------Ceecccccc
Q 014125 288 PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHI--YDLQTG------------KWISGFQAA 353 (430)
Q Consensus 288 ~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v--wd~~~~------------~~~~~~~~~ 353 (430)
.+-++||+++... .+.. ....++++.+++|...+++.|+...-.-| =+.+.| +.+..+++|
T Consensus 212 ttakl~D~~tl~v-~Kty----~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGH 286 (327)
T KOG0643|consen 212 TTAKLVDVRTLEV-LKTY----TTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGH 286 (327)
T ss_pred ccceeeeccceee-EEEe----eecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccc
Confidence 9999999998643 3232 34678999999998877776664332222 222223 345677899
Q ss_pred cCCeeEEEEcCCCcEEEEeeCCceeee
Q 014125 354 ADTVNGFSFHPFLPMAASSSGHRRFPV 380 (430)
Q Consensus 354 ~~~v~~~~~~~~~~~l~s~~~d~~~~v 380 (430)
-++|++++|||+|+..++|+.||.|++
T Consensus 287 FGPINsvAfhPdGksYsSGGEDG~VR~ 313 (327)
T KOG0643|consen 287 FGPINSVAFHPDGKSYSSGGEDGYVRL 313 (327)
T ss_pred ccCcceeEECCCCcccccCCCCceEEE
Confidence 999999999999988888775444444
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=219.18 Aligned_cols=265 Identities=20% Similarity=0.300 Sum_probs=212.3
Q ss_pred eecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-EcC
Q 014125 115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYN 193 (430)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d 193 (430)
...|.+.++.++|+|. .|..||+|+.|..|++|+...+.... .+..-...|...|.+++|+|.|++|++ +.|
T Consensus 10 ~~gh~~r~W~~awhp~------~g~ilAscg~Dk~vriw~~~~~~s~~-ck~vld~~hkrsVRsvAwsp~g~~La~aSFD 82 (312)
T KOG0645|consen 10 LSGHKDRVWSVAWHPG------KGVILASCGTDKAVRIWSTSSGDSWT-CKTVLDDGHKRSVRSVAWSPHGRYLASASFD 82 (312)
T ss_pred ecCCCCcEEEEEeccC------CceEEEeecCCceEEEEecCCCCcEE-EEEeccccchheeeeeeecCCCcEEEEeecc
Confidence 3346678999999653 17799999999999999998543322 221122245569999999999999994 599
Q ss_pred CeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCc---eeeEEeeccccCeEE
Q 014125 194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM---ELLYVLHGQEGGVTH 270 (430)
Q Consensus 194 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~---~~~~~~~~~~~~i~~ 270 (430)
.++.||.-... .++ ....+++|...|.+++|++ ++++||+++.|..|.+|..... ++...++.|...|-.
T Consensus 83 ~t~~Iw~k~~~--efe----cv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~ 155 (312)
T KOG0645|consen 83 ATVVIWKKEDG--EFE----CVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKH 155 (312)
T ss_pred ceEEEeecCCC--cee----EEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccE
Confidence 99999986532 222 2344589999999999999 7889999999999999998743 578889999999999
Q ss_pred EEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccc
Q 014125 271 VQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGF 350 (430)
Q Consensus 271 ~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 350 (430)
+.|+|....|++++ .|++|++|+-.... -........+|.+.|.+++|+|.|..|++++.|++|+||.+.+.- -
T Consensus 156 V~WHPt~dlL~S~S-YDnTIk~~~~~~dd-dW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~----~ 229 (312)
T KOG0645|consen 156 VIWHPTEDLLFSCS-YDNTIKVYRDEDDD-DWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL----S 229 (312)
T ss_pred EEEcCCcceeEEec-cCCeEEEEeecCCC-CeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc----c
Confidence 99999999999999 99999999877322 111223336888899999999999999999999999999876321 1
Q ss_pred ccccCCeeEEEEcCCCcEEEEeeCCceeeecC---------------------------------CCccccccCCCcEEE
Q 014125 351 QAAADTVNGFSFHPFLPMAASSSGHRRFPVDD---------------------------------FEDLHLSGDENCVSV 397 (430)
Q Consensus 351 ~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~---------------------------------~~~l~~~~~d~~i~~ 397 (430)
..|...+..++|. ...|++++.|+.++++. .+.|+++|+||.|++
T Consensus 230 ~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~ 307 (312)
T KOG0645|consen 230 GMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNF 307 (312)
T ss_pred hhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEE
Confidence 3477899999998 67899999999999981 123899999999999
Q ss_pred Eeec
Q 014125 398 WSFL 401 (430)
Q Consensus 398 w~~~ 401 (430)
|.+.
T Consensus 308 W~l~ 311 (312)
T KOG0645|consen 308 WELE 311 (312)
T ss_pred EEec
Confidence 9874
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=243.42 Aligned_cols=305 Identities=17% Similarity=0.220 Sum_probs=239.8
Q ss_pred eeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccC
Q 014125 53 FRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS 132 (430)
Q Consensus 53 ~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 132 (430)
--.+.+|+..|.++++.|.|..|++||.|-+|++||+....... .....+.-...+.|.+++|
T Consensus 160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~------------~~fr~l~P~E~h~i~sl~y----- 222 (641)
T KOG0772|consen 160 EIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASM------------RSFRQLQPCETHQINSLQY----- 222 (641)
T ss_pred eEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccc------------hhhhccCcccccccceeee-----
Confidence 34678999999999999999999999999999999998653311 1122233345578999999
Q ss_pred ccCCCCceEEEEeCCCcEEEEeccCCceeeeeecc-------cccccccceEEEEECCCCc--EEEEEcCCeEEEEEcCC
Q 014125 133 ASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAY-------DAVDEITAAFSVAFNPTGT--KIFAGYNKSVRVFDVHR 203 (430)
Q Consensus 133 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-------~~~~~~~~v~~~~~~~~~~--~l~~~~d~~i~v~d~~~ 203 (430)
++.|..|++.+.....+|+|-...+.....++. ...+|...+++.+|+|..+ +|.++.||++++||+..
T Consensus 223 --s~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~ 300 (641)
T KOG0772|consen 223 --SVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNN 300 (641)
T ss_pred --cCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCC
Confidence 667889999999999999997655544443332 3345777899999999864 55578999999999987
Q ss_pred CCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCce---eeEEeecccc--CeEEEEEccCCC
Q 014125 204 PGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME---LLYVLHGQEG--GVTHVQFSRDGN 278 (430)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~---~~~~~~~~~~--~i~~~~~~~~~~ 278 (430)
.......+.... ..+..-+++.++|+| ++.+||+|+.||.|.+|+..+.. ....-.+|.. .|+||.||++|+
T Consensus 301 ~k~q~qVik~k~--~~g~Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~ 377 (641)
T KOG0772|consen 301 TKSQLQVIKTKP--AGGKRVPVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGN 377 (641)
T ss_pred chhheeEEeecc--CCCcccCceeeecCC-CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccc
Confidence 655444433222 235556899999999 66689999999999999976542 2233456776 899999999999
Q ss_pred EEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEcc------CCcEEEEEcCCCCeeccccc
Q 014125 279 YLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQ------DGLVHIYDLQTGKWISGFQA 352 (430)
Q Consensus 279 ~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~ 352 (430)
+|++-+ .|+++++||+++.++.+..... ....-+-+.++|||+.++|++|+. .|.+++||..+...++.+..
T Consensus 378 ~LlSRg-~D~tLKvWDLrq~kkpL~~~tg-L~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i 455 (641)
T KOG0772|consen 378 YLLSRG-FDDTLKVWDLRQFKKPLNVRTG-LPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDI 455 (641)
T ss_pred hhhhcc-CCCceeeeeccccccchhhhcC-CCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecC
Confidence 999999 9999999999998766543322 223345577999999999999975 46799999999999999888
Q ss_pred ccCCeeEEEEcCCCcEEEEeeCCceeeec
Q 014125 353 AADTVNGFSFHPFLPMAASSSGHRRFPVD 381 (430)
Q Consensus 353 ~~~~v~~~~~~~~~~~l~s~~~d~~~~vw 381 (430)
....|..+.|||.-+.|+.++.||.++|+
T Consensus 456 ~~aSvv~~~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 456 STASVVRCLWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred CCceEEEEeecchhhheeeecCCCceEEE
Confidence 88899999999999999999999888887
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=256.90 Aligned_cols=304 Identities=16% Similarity=0.239 Sum_probs=254.1
Q ss_pred ccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCC
Q 014125 57 SIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP 136 (430)
Q Consensus 57 ~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 136 (430)
..-+..|..++|+|...+++++-..|.|++||..-+.+.. .+..|.++|+.++| +|
T Consensus 6 EskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~-----------------rFdeHdGpVRgv~F-------H~ 61 (1202)
T KOG0292|consen 6 ESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID-----------------RFDEHDGPVRGVDF-------HP 61 (1202)
T ss_pred hcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHh-----------------hhhccCCccceeee-------cC
Confidence 3445679999999999999999999999999997554332 34457799999999 55
Q ss_pred CCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCccccccccc
Q 014125 137 TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLK 215 (430)
Q Consensus 137 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~ 215 (430)
...+|++|+.|-.|+||+..+.+++.++.+|.. -|..+.|++.-.+|+ ++.|.+|+||+..+ ....
T Consensus 62 ~qplFVSGGDDykIkVWnYk~rrclftL~GHlD-----YVRt~~FHheyPWIlSASDDQTIrIWNwqs--------r~~i 128 (1202)
T KOG0292|consen 62 TQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLD-----YVRTVFFHHEYPWILSASDDQTIRIWNWQS--------RKCI 128 (1202)
T ss_pred CCCeEEecCCccEEEEEecccceehhhhccccc-----eeEEeeccCCCceEEEccCCCeEEEEeccC--------CceE
Confidence 688999999999999999999999999888776 899999999999999 56899999999987 3444
Q ss_pred CCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCce-----------------------------eeEEeecccc
Q 014125 216 GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME-----------------------------LLYVLHGQEG 266 (430)
Q Consensus 216 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~-----------------------------~~~~~~~~~~ 266 (430)
..+.+|...|.|..|+| ...++++++-|.+|++||+..-+ ....+.+|..
T Consensus 129 avltGHnHYVMcAqFhp-tEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDR 207 (1202)
T KOG0292|consen 129 AVLTGHNHYVMCAQFHP-TEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDR 207 (1202)
T ss_pred EEEecCceEEEeeccCC-ccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccccc
Confidence 55689999999999999 67799999999999999964210 1245678999
Q ss_pred CeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCe
Q 014125 267 GVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKW 346 (430)
Q Consensus 267 ~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 346 (430)
.|+-++|+|.-..|++|+ .|..|++|.+...+.- ......+|.+.|.++-|+|...++++.|+|++|+|||+...+.
T Consensus 208 GVNwaAfhpTlpliVSG~-DDRqVKlWrmnetKaW--EvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~ 284 (1202)
T KOG0292|consen 208 GVNWAAFHPTLPLIVSGA-DDRQVKLWRMNETKAW--EVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTS 284 (1202)
T ss_pred ccceEEecCCcceEEecC-CcceeeEEEeccccce--eehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccc
Confidence 999999999999999999 9999999999765322 3344478999999999999999999999999999999999999
Q ss_pred ecccccccCCeeEEEEcCCCcEEEEeeCCceeeec-CCCc---------cccccCCCcEEEEeecc
Q 014125 347 ISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVD-DFED---------LHLSGDENCVSVWSFLY 402 (430)
Q Consensus 347 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw-~~~~---------l~~~~~d~~i~~w~~~~ 402 (430)
+++++...+.-+.++-+|..+++++|-..|.+.+- +.+. |...- |..|+.+|+.+
T Consensus 285 v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkleRErpa~~v~~n~LfYvk-d~~i~~~d~~t 349 (1202)
T KOG0292|consen 285 VQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLERERPAYAVNGNGLFYVK-DRFIRSYDLRT 349 (1202)
T ss_pred eeeeeccCCeEEEEEecCCcceeeeecCCceEEEEEcccCceEEEcCCEEEEEc-cceEEeeeccc
Confidence 99999888899999999999999888766654332 2222 33333 78888888886
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=220.95 Aligned_cols=281 Identities=18% Similarity=0.307 Sum_probs=218.8
Q ss_pred eEEEECc-CCceEEEec-------CCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccC
Q 014125 64 KGIKWSP-DGSSFLTSS-------EDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASD 135 (430)
Q Consensus 64 ~~~~~sp-~~~~l~s~~-------~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 135 (430)
.++.||| -.++||.+. ..|++.|.++...+ .......+.-...+.+++|++.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~---------------gi~e~~s~d~~D~LfdV~Wse~----- 71 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPK---------------GIQECQSYDTEDGLFDVAWSEN----- 71 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCC---------------CeEEEEeeecccceeEeeecCC-----
Confidence 5789999 233444332 36888998886332 3334445556678999999764
Q ss_pred CCCceEEEEeCCCcEEEEeccC-CceeeeeecccccccccceEEEEECCCCcEEE--EEcCCeEEEEEcCCCCCcccccc
Q 014125 136 PTSCVFASTTRDHPIHLWDATT-GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF--AGYNKSVRVFDVHRPGRDFEKYS 212 (430)
Q Consensus 136 ~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~~~d~~i~v~d~~~~~~~~~~~~ 212 (430)
..+.+++++.||++++||+.. ..++..++.|.. +|.++.|++..+..+ ++.|++|++|+...+..
T Consensus 72 -~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~-----EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~S------ 139 (311)
T KOG0277|consen 72 -HENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKR-----EVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNS------ 139 (311)
T ss_pred -CcceEEEEecCceEEEeccCCCCcchhHHHhhhh-----heEEeccccccceeEEeeccCCceEeecCCCCcc------
Confidence 356899999999999999643 345666666655 999999998765444 56999999999987432
Q ss_pred cccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCC-EEEEEecCCCeEE
Q 014125 213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGN-YLYTGGRKDPYIL 291 (430)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~d~~i~ 291 (430)
...+.+|...|...+|+|..++++++++.|+++++||++.......+..|...|.++.|+.-.. .+++++ .|+.|+
T Consensus 140 --v~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~-vd~~vr 216 (311)
T KOG0277|consen 140 --VQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGG-VDNLVR 216 (311)
T ss_pred --eEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecC-CCceEE
Confidence 2225789999999999999999999999999999999987655556889999999999998555 455555 999999
Q ss_pred EEeCCCCceEEEEeecccCCccceEEEEEcCCC-CEEEEEccCCcEEEEEcCCC-CeecccccccCCeeEEEEcCC-CcE
Q 014125 292 CWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSG-RHLGTGGQDGLVHIYDLQTG-KWISGFQAAADTVNGFSFHPF-LPM 368 (430)
Q Consensus 292 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~-~~~ 368 (430)
+||+++.+.++..+ .+|.-.|..+.|||.. ..|++++.|-+++|||...+ ..+.+...|+.-|.++.|++. ..+
T Consensus 217 ~wDir~~r~pl~eL---~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~ 293 (311)
T KOG0277|consen 217 GWDIRNLRTPLFEL---NGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQ 293 (311)
T ss_pred EEehhhccccceee---cCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCce
Confidence 99999887665444 7899999999999974 67999999999999999854 456677788889999999984 447
Q ss_pred EEEeeCCceeeecC
Q 014125 369 AASSSGHRRFPVDD 382 (430)
Q Consensus 369 l~s~~~d~~~~vw~ 382 (430)
+|+++.|+.+.||+
T Consensus 294 vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 294 VASTGWDELLYVWN 307 (311)
T ss_pred eeecccccceeeec
Confidence 77777766666665
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=254.16 Aligned_cols=256 Identities=23% Similarity=0.388 Sum_probs=211.4
Q ss_pred CCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCc--eeeeeecccccccccceEEEEECCCCcEEEEE-cCC
Q 014125 118 EGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGL--LRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNK 194 (430)
Q Consensus 118 ~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~ 194 (430)
+...|.++.| +++|+.+++++.++.+++|+....+ ....+..|. ..|..++|+|++++++++ .|+
T Consensus 158 ~~~sv~~~~f-------s~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~-----~~v~~~~fs~d~~~l~s~s~D~ 225 (456)
T KOG0266|consen 158 ECPSVTCVDF-------SPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHT-----RGVSDVAFSPDGSYLLSGSDDK 225 (456)
T ss_pred ccCceEEEEE-------cCCCCeEEEccCCCcEEEeecccccchhhccccccc-----cceeeeEECCCCcEEEEecCCc
Confidence 3567888887 8899999999999999999997776 444443333 499999999999999954 999
Q ss_pred eEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEc
Q 014125 195 SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFS 274 (430)
Q Consensus 195 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~ 274 (430)
+|++||+.... .....+.+|...|++++|+|++ +++++|+.|++|++||++++++...+.+|...|++++|+
T Consensus 226 tiriwd~~~~~-------~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~ 297 (456)
T KOG0266|consen 226 TLRIWDLKDDG-------RNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFS 297 (456)
T ss_pred eEEEeeccCCC-------eEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEEC
Confidence 99999995432 2333347999999999999966 999999999999999999999999999999999999999
Q ss_pred cCCCEEEEEecCCCeEEEEeCCCCceE-EEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccc
Q 014125 275 RDGNYLYTGGRKDPYILCWDLRKAVQV-VYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAA 353 (430)
Q Consensus 275 ~~~~~l~~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 353 (430)
+++.+|++++ .|+.|++||+.++... ...+....... .++.+.|+|++.++++++.|+.+++||+..++.+..+.+|
T Consensus 298 ~d~~~l~s~s-~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~ 375 (456)
T KOG0266|consen 298 PDGNLLVSAS-YDGTIRVWDLETGSKLCLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGH 375 (456)
T ss_pred CCCCEEEEcC-CCccEEEEECCCCceeeeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeeccc
Confidence 9999999998 8999999999998632 22222212222 6999999999999999999999999999999999999998
Q ss_pred cCCe---eEEEEcCCCcEEEEeeCCceeeecCCCccccccCCCcEEEEeecccccccccCCC
Q 014125 354 ADTV---NGFSFHPFLPMAASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYASMMENADGI 412 (430)
Q Consensus 354 ~~~v---~~~~~~~~~~~l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~ 412 (430)
...+ .+...++.+.++++++ .|+.|++|+...+..+..+.+|
T Consensus 376 ~~~~~~~~~~~~~~~~~~i~sg~-----------------~d~~v~~~~~~s~~~~~~l~~h 420 (456)
T KOG0266|consen 376 SNLVRCIFSPTLSTGGKLIYSGS-----------------EDGSVYVWDSSSGGILQRLEGH 420 (456)
T ss_pred CCcceeEecccccCCCCeEEEEe-----------------CCceEEEEeCCccchhhhhcCC
Confidence 8753 3444567788888887 5677777777777777777777
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-34 Score=249.28 Aligned_cols=291 Identities=17% Similarity=0.196 Sum_probs=244.9
Q ss_pred eecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCc
Q 014125 54 RTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (430)
Q Consensus 54 ~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (430)
-...||+..|+++++|.+...+++|+. +.++||+..+.+....+. . +-+.+.+|.
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~kciRTi~------------------~-~y~l~~~Fv----- 421 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTLKCIRTIT------------------C-GYILASKFV----- 421 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecCC-CcEEEEEccCcceeEEec------------------c-ccEEEEEec-----
Confidence 367899999999999999888888765 589999998775543222 1 367777784
Q ss_pred cCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCC----cc
Q 014125 134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGR----DF 208 (430)
Q Consensus 134 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~----~~ 208 (430)
|.++++++|...|.+.++|+.+...+.+++.|.+ .|++++.+||++.++ +|.|.+|++||...... ..
T Consensus 422 --pgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdg-----aIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~ 494 (888)
T KOG0306|consen 422 --PGDRYIVLGTKNGELQVFDLASASLVETIRAHDG-----AIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQK 494 (888)
T ss_pred --CCCceEEEeccCCceEEEEeehhhhhhhhhcccc-----ceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccc
Confidence 4688999999999999999999998888887776 999999999999888 56999999999753211 11
Q ss_pred cccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCC
Q 014125 209 EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDP 288 (430)
Q Consensus 209 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~ 288 (430)
+.........-.-...|.|+.++| ++.+|+++--|.+|++|-+++-+....+-+|.-||.|+..+||++.+++++ .|.
T Consensus 495 k~lsl~~~rtLel~ddvL~v~~Sp-dgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgS-ADK 572 (888)
T KOG0306|consen 495 KVLSLKHTRTLELEDDVLCVSVSP-DGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGS-ADK 572 (888)
T ss_pred eeeeeccceEEeccccEEEEEEcC-CCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEecc-CCC
Confidence 111111111123356799999999 778999999999999999999999999999999999999999999999999 999
Q ss_pred eEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcE
Q 014125 289 YILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPM 368 (430)
Q Consensus 289 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 368 (430)
.|++|-+.-+.+.. ...+|...|.++.|-|....+++++.|+.|+-||-...+.++.+.+|...|++++..|+|.+
T Consensus 573 nVKiWGLdFGDCHK----S~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~ 648 (888)
T KOG0306|consen 573 NVKIWGLDFGDCHK----SFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSF 648 (888)
T ss_pred ceEEeccccchhhh----hhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCe
Confidence 99999998775432 22589999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeCCceeeecC
Q 014125 369 AASSSGHRRFPVDD 382 (430)
Q Consensus 369 l~s~~~d~~~~vw~ 382 (430)
+++++.|..+++|.
T Consensus 649 vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 649 VVSSSHDKSIRLWE 662 (888)
T ss_pred EEeccCCceeEeee
Confidence 99999888888884
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=237.13 Aligned_cols=289 Identities=13% Similarity=0.197 Sum_probs=232.7
Q ss_pred ceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecccc
Q 014125 52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (430)
Q Consensus 52 ~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (430)
....+..|.+.|..+.|-++...|++|+.|..|++|++...+. .......+..++|..+.|
T Consensus 167 ~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~---------------~~~~tLaGs~g~it~~d~---- 227 (459)
T KOG0288|consen 167 ALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKS---------------ELISTLAGSLGNITSIDF---- 227 (459)
T ss_pred hhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchh---------------hhhhhhhccCCCcceeee----
Confidence 4457889999999999999989999999999999999876541 111223334467999998
Q ss_pred CccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCCcccc
Q 014125 132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFEK 210 (430)
Q Consensus 132 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~~~ 210 (430)
.+++..+++++.|+.+++|++...+...++.+|.. .|+++.|......+++ +.|.+|++||+.... ..+.
T Consensus 228 ---d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtd-----kVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~-C~kt 298 (459)
T KOG0288|consen 228 ---DSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTD-----KVTAAKFKLSHSRVVSGSADRTIKLWDLQKAY-CSKT 298 (459)
T ss_pred ---cCCCceEEeecCCCceeeeeccchhhhhhhccccc-----ceeeehhhccccceeeccccchhhhhhhhhhh-eecc
Confidence 77899999999999999999999999999998776 8999999877765664 599999999997621 1111
Q ss_pred cccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeE
Q 014125 211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYI 290 (430)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i 290 (430)
.+. ...+..+..+ ...+++|..|++|++||.++..+......+ +.|+++..+++|..|++++ .|.++
T Consensus 299 ------~l~--~S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~g-g~vtSl~ls~~g~~lLsss-RDdtl 365 (459)
T KOG0288|consen 299 ------VLP--GSQCNDIVCS---ISDVISGHFDKKVRFWDIRSADKTRSVPLG-GRVTSLDLSMDGLELLSSS-RDDTL 365 (459)
T ss_pred ------ccc--cccccceEec---ceeeeecccccceEEEeccCCceeeEeecC-cceeeEeeccCCeEEeeec-CCCce
Confidence 111 1235555554 347889999999999999999999888866 4899999999999999998 99999
Q ss_pred EEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccC--CeeEEEEcCCCcE
Q 014125 291 LCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAAD--TVNGFSFHPFLPM 368 (430)
Q Consensus 291 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~ 368 (430)
.+.|+++..................+.+.|||++.|+++|+.||.|+||++.++++...+..... .|++++|+|.|..
T Consensus 366 ~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~ 445 (459)
T KOG0288|consen 366 KVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSG 445 (459)
T ss_pred eeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCch
Confidence 99999987533222111122334588899999999999999999999999999999888876554 4999999999999
Q ss_pred EEEeeCCceeeec
Q 014125 369 AASSSGHRRFPVD 381 (430)
Q Consensus 369 l~s~~~d~~~~vw 381 (430)
|++++.++.+.+|
T Consensus 446 Llsadk~~~v~lW 458 (459)
T KOG0288|consen 446 LLSADKQKAVTLW 458 (459)
T ss_pred hhcccCCcceEec
Confidence 9999987777777
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-35 Score=242.80 Aligned_cols=263 Identities=14% Similarity=0.274 Sum_probs=218.6
Q ss_pred eeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccC-CceeeeeecccccccccceEEEEECCCCcEEE-E
Q 014125 113 SLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATT-GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-A 190 (430)
Q Consensus 113 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~ 190 (430)
....+|...|.++.|.|. .+.+|++++.|+.|+||++.. +.+++++.+|.. +|..++|+++|..++ +
T Consensus 208 ~~~~gH~kgvsai~~fp~------~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k-----~Vrd~~~s~~g~~fLS~ 276 (503)
T KOG0282|consen 208 HNLSGHTKGVSAIQWFPK------KGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRK-----PVRDASFNNCGTSFLSA 276 (503)
T ss_pred eeccCCccccchhhhccc------eeeEEEecCCCceEEEEEEecCcceehhhhcchh-----hhhhhhccccCCeeeee
Confidence 345678899999999663 678999999999999999877 889999998876 999999999998887 6
Q ss_pred EcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEE
Q 014125 191 GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTH 270 (430)
Q Consensus 191 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~ 270 (430)
+.|+.|++||++++..... ......++|+.|+|++.+.+++|..|+.|+.||+++++.++.+..|-+.|..
T Consensus 277 sfD~~lKlwDtETG~~~~~---------f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~ 347 (503)
T KOG0282|consen 277 SFDRFLKLWDTETGQVLSR---------FHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILD 347 (503)
T ss_pred ecceeeeeeccccceEEEE---------EecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheee
Confidence 7999999999998532211 1122458999999988899999999999999999999999999999999999
Q ss_pred EEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCC---Cee
Q 014125 271 VQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTG---KWI 347 (430)
Q Consensus 271 ~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~---~~~ 347 (430)
+.|-++|+.+++++ .|+.++||+.+.+....... ......+.++..+|++.++++-+.|+.|.++.+... ...
T Consensus 348 i~F~~~g~rFissS-Ddks~riWe~~~~v~ik~i~---~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkk 423 (503)
T KOG0282|consen 348 ITFVDEGRRFISSS-DDKSVRIWENRIPVPIKNIA---DPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKK 423 (503)
T ss_pred eEEccCCceEeeec-cCccEEEEEcCCCccchhhc---chhhccCcceecCCCCCeehhhccCceEEEEecccccccCHh
Confidence 99999999999999 99999999998874433222 223334567889999999999999999999997643 234
Q ss_pred cccccccC--CeeEEEEcCCCcEEEEeeCCceeeecCCCc--------------------------cccccCCCcEEEEe
Q 014125 348 SGFQAAAD--TVNGFSFHPFLPMAASSSGHRRFPVDDFED--------------------------LHLSGDENCVSVWS 399 (430)
Q Consensus 348 ~~~~~~~~--~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~--------------------------l~~~~~d~~i~~w~ 399 (430)
+.+.+|.. --..+.|+|||.+|++|+.||.+.+||-.. ++++|.||.|++|+
T Consensus 424 K~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 424 KRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred hhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 56777764 356789999999999999999988885433 78888888888885
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-32 Score=214.45 Aligned_cols=279 Identities=19% Similarity=0.273 Sum_probs=216.2
Q ss_pred eeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccC
Q 014125 53 FRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS 132 (430)
Q Consensus 53 ~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 132 (430)
.+.+..-.+.|+++.|+++|.+|++++.|.+++|||..+++....+...+ -.+..++|
T Consensus 7 ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skk-----------------yG~~~~~F----- 64 (311)
T KOG1446|consen 7 AKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKK-----------------YGVDLACF----- 64 (311)
T ss_pred ccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeeccc-----------------ccccEEEE-----
Confidence 33445567789999999999999999999999999999886654433322 24445555
Q ss_pred ccCCCCceEEEEeC--CCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCccc
Q 014125 133 ASDPTSCVFASTTR--DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFE 209 (430)
Q Consensus 133 ~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~ 209 (430)
......++.++. |.+|+..++.+.+.++.+.+|.. .|.+++.+|-+..++ ++.|++|++||++.......
T Consensus 65 --th~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~-----~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~ 137 (311)
T KOG1446|consen 65 --THHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKK-----RVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGL 137 (311)
T ss_pred --ecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCc-----eEEEEEecCCCCeEEecccCCeEEeeEecCCCCceE
Confidence 223334555554 88999999999999999999887 999999999988777 55999999999986432211
Q ss_pred ccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCc--eeeEEee---ccccCeEEEEEccCCCEEEEEe
Q 014125 210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM--ELLYVLH---GQEGGVTHVQFSRDGNYLYTGG 284 (430)
Q Consensus 210 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~--~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~ 284 (430)
. +...-..++|+| .+-++|++.....|++||++.. .+...+. ......+.|.|+|+|++|+.+.
T Consensus 138 l----------~~~~~pi~AfDp-~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT 206 (311)
T KOG1446|consen 138 L----------NLSGRPIAAFDP-EGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLST 206 (311)
T ss_pred E----------ecCCCcceeECC-CCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEe
Confidence 1 112234679999 7778888888889999999864 3444443 2356789999999999999999
Q ss_pred cCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccccc-ccCCeeEEEEc
Q 014125 285 RKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQA-AADTVNGFSFH 363 (430)
Q Consensus 285 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~ 363 (430)
..+.+++.|.-.+.... ..........-....+|+||++++++|+.||+|.+|++++++.+..+.+ +.+++.++.|+
T Consensus 207 -~~s~~~~lDAf~G~~~~-tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fn 284 (311)
T KOG1446|consen 207 -NASFIYLLDAFDGTVKS-TFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFN 284 (311)
T ss_pred -CCCcEEEEEccCCcEee-eEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccC
Confidence 89999999998885332 2222222222236788999999999999999999999999999999998 68899999999
Q ss_pred CCCcEEEEee
Q 014125 364 PFLPMAASSS 373 (430)
Q Consensus 364 ~~~~~l~s~~ 373 (430)
|...++++++
T Consensus 285 P~~~mf~sa~ 294 (311)
T KOG1446|consen 285 PRYAMFVSAS 294 (311)
T ss_pred CceeeeeecC
Confidence 9999998886
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-33 Score=233.59 Aligned_cols=277 Identities=15% Similarity=0.274 Sum_probs=229.3
Q ss_pred CCceeEEEECcCCc-eEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCC
Q 014125 60 NNFLKGIKWSPDGS-SFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS 138 (430)
Q Consensus 60 ~~~v~~~~~sp~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 138 (430)
.+.|.+++|||... -+|+.+. -.+.||+..+......+ ......|++++| -.||
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~-----------------srFk~~v~s~~f-------R~DG 80 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTF-----------------SRFKDVVYSVDF-------RSDG 80 (487)
T ss_pred cCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhH-----------------HhhccceeEEEe-------ecCC
Confidence 34699999999543 3444443 37999988765433222 222367899998 6699
Q ss_pred ceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCCcccccccccC
Q 014125 139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYSTLKG 216 (430)
Q Consensus 139 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~~~~~~~~~ 216 (430)
.+|+.|...|.|+++|+.+...+..+..|.. ++..+.|+|++..++ .| .|+.+++||+.+.. ...
T Consensus 81 ~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~a-----pv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~--------v~~ 147 (487)
T KOG0310|consen 81 RLLAAGDESGHVKVFDMKSRVILRQLYAHQA-----PVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY--------VQA 147 (487)
T ss_pred eEEEccCCcCcEEEeccccHHHHHHHhhccC-----ceeEEEecccCCeEEEecCCCceEEEEEcCCcE--------EEE
Confidence 9999999999999999777666777777776 999999999886666 44 77889999998742 233
Q ss_pred CCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCc-eeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeC
Q 014125 217 NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-ELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDL 295 (430)
Q Consensus 217 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~ 295 (430)
.+.+|+..|+|.+|+|....++++|+.||+|++||.+.. ..+..+. |..+|..+.+-|.|..+++++ ...|++||+
T Consensus 148 ~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAg--Gn~vkVWDl 224 (487)
T KOG0310|consen 148 ELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAG--GNSVKVWDL 224 (487)
T ss_pred EecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcC--CCeEEEEEe
Confidence 568999999999999988889999999999999999987 5666665 999999999999999999887 789999999
Q ss_pred CCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCC
Q 014125 296 RKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGH 375 (430)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 375 (430)
.++.+..... ..|...|+|+++..++..|++|+-|+.|++||+.+.+.+..+. ..++|.+++.+|++..++.|-.+
T Consensus 225 ~~G~qll~~~---~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsn 300 (487)
T KOG0310|consen 225 TTGGQLLTSM---FNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSN 300 (487)
T ss_pred cCCceehhhh---hcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEeccc
Confidence 9887665443 4589999999999999999999999999999999999998887 56899999999999999999998
Q ss_pred ceeeec
Q 014125 376 RRFPVD 381 (430)
Q Consensus 376 ~~~~vw 381 (430)
|.+.+-
T Consensus 301 Glv~~r 306 (487)
T KOG0310|consen 301 GLVSIR 306 (487)
T ss_pred ceeeee
Confidence 888765
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=266.58 Aligned_cols=240 Identities=16% Similarity=0.220 Sum_probs=196.6
Q ss_pred cCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCc--------eeeeeecccccccccceEEEEECCC-CcE
Q 014125 117 TEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGL--------LRCTYRAYDAVDEITAAFSVAFNPT-GTK 187 (430)
Q Consensus 117 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--------~~~~~~~~~~~~~~~~v~~~~~~~~-~~~ 187 (430)
.|...|.+++| +|++.+|++|+.|+.|++|++.... ....+. ....+.+++|+|. +.+
T Consensus 481 ~~~~~V~~i~f-------s~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~------~~~~v~~l~~~~~~~~~ 547 (793)
T PLN00181 481 NSSNLVCAIGF-------DRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA------SRSKLSGICWNSYIKSQ 547 (793)
T ss_pred CCCCcEEEEEE-------CCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec------ccCceeeEEeccCCCCE
Confidence 47789999999 7789999999999999999975421 111111 1237889999875 567
Q ss_pred EE-EEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeecccc
Q 014125 188 IF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEG 266 (430)
Q Consensus 188 l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~ 266 (430)
|+ ++.|+.|++||+.+. .......+|...|.+++|+|.++.+|++|+.|++|++||++++..+..+..+ .
T Consensus 548 las~~~Dg~v~lWd~~~~--------~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~ 618 (793)
T PLN00181 548 VASSNFEGVVQVWDVARS--------QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-A 618 (793)
T ss_pred EEEEeCCCeEEEEECCCC--------eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-C
Confidence 77 458999999999763 1222346788999999999867789999999999999999999888887744 6
Q ss_pred CeEEEEEc-cCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCC--
Q 014125 267 GVTHVQFS-RDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQT-- 343 (430)
Q Consensus 267 ~i~~~~~~-~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~-- 343 (430)
.+.++.|+ +++.+|++++ .||.|++||+++.......+ .+|...|.++.|. ++.+|++++.|+.|++||++.
T Consensus 619 ~v~~v~~~~~~g~~latgs-~dg~I~iwD~~~~~~~~~~~---~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~ 693 (793)
T PLN00181 619 NICCVQFPSESGRSLAFGS-ADHKVYYYDLRNPKLPLCTM---IGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSI 693 (793)
T ss_pred CeEEEEEeCCCCCEEEEEe-CCCeEEEEECCCCCccceEe---cCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCc
Confidence 79999995 5788999998 99999999998764333222 5788899999997 678999999999999999974
Q ss_pred ----CCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCC
Q 014125 344 ----GKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 344 ----~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~ 383 (430)
.+++..+.+|...+..++|+|++.+|++|+.|+.+++|+.
T Consensus 694 ~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~ 737 (793)
T PLN00181 694 SGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHK 737 (793)
T ss_pred cccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEEC
Confidence 3567888999999999999999999999999999999974
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-33 Score=217.85 Aligned_cols=269 Identities=21% Similarity=0.302 Sum_probs=214.6
Q ss_pred ceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccC-CceeeeeecccccccccceEEEEECCCCcEEE-
Q 014125 112 ASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATT-GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF- 189 (430)
Q Consensus 112 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~- 189 (430)
.....+|.+.|+.+.| +|+|.+|++|+.|..|.+|++.. .+....+++|.. .|..+.|.+|+..|+
T Consensus 40 ~m~l~gh~geI~~~~F-------~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsg-----AVM~l~~~~d~s~i~S 107 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKF-------HPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSG-----AVMELHGMRDGSHILS 107 (338)
T ss_pred hhhcCCCcceEEEEEE-------CCCCCeEeecCCcceEEEEeccccccceeeeccccc-----eeEeeeeccCCCEEEE
Confidence 3456778899999999 77899999999999999999643 344556666655 999999999999999
Q ss_pred EEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeE
Q 014125 190 AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVT 269 (430)
Q Consensus 190 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~ 269 (430)
+|.|.+|+.||++++. ......+|..-+.++.-..-+..++.+++.|+++++||+++...++++. ....++
T Consensus 108 ~gtDk~v~~wD~~tG~--------~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqlt 178 (338)
T KOG0265|consen 108 CGTDKTVRGWDAETGK--------RIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLT 178 (338)
T ss_pred ecCCceEEEEecccce--------eeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEE
Confidence 6799999999999853 3333478888899988666677789999999999999999998888775 456799
Q ss_pred EEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCC----C
Q 014125 270 HVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTG----K 345 (430)
Q Consensus 270 ~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~----~ 345 (430)
++.|...+..+.+++ -|+.|++||++..... +...+|...|+.+..+|+|.++.+-+.|.++++||++.. +
T Consensus 179 Av~f~d~s~qv~sgg-Idn~ikvWd~r~~d~~----~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R 253 (338)
T KOG0265|consen 179 AVGFKDTSDQVISGG-IDNDIKVWDLRKNDGL----YTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQR 253 (338)
T ss_pred EEEecccccceeecc-ccCceeeeccccCcce----EEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCc
Confidence 999999999999999 9999999999887433 233789999999999999999999999999999999853 3
Q ss_pred eecccccccC----CeeEEEEcCCCcEEEEeeCCceeeecCCCccccccCCCcEEEEeecccccccccCCCCcceeeeec
Q 014125 346 WISGFQAAAD----TVNGFSFHPFLPMAASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYASMMENADGINGCEFNCQS 421 (430)
Q Consensus 346 ~~~~~~~~~~----~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 421 (430)
++..+.+|.. ....++|+|++..+.+++.|+ .+++||..+-..+..+-||.+ .++++.
T Consensus 254 ~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr-----------------~vyvwd~~~r~~lyklpGh~g-svn~~~ 315 (338)
T KOG0265|consen 254 CVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADR-----------------FVYVWDTTSRRILYKLPGHYG-SVNEVD 315 (338)
T ss_pred eEEEeecchhhhhhhcceeeccCCCCccccccccc-----------------eEEEeecccccEEEEcCCcce-eEEEee
Confidence 4667776644 467789999999999988655 455555555555555555555 334444
Q ss_pred cCc
Q 014125 422 EHE 424 (430)
Q Consensus 422 ~~~ 424 (430)
.++
T Consensus 316 Fhp 318 (338)
T KOG0265|consen 316 FHP 318 (338)
T ss_pred ecC
Confidence 443
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-32 Score=233.80 Aligned_cols=241 Identities=27% Similarity=0.414 Sum_probs=203.3
Q ss_pred cCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-EcCCe
Q 014125 117 TEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKS 195 (430)
Q Consensus 117 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~ 195 (430)
.|..+|.+++| +|++++|++++.||.+++|++.+++....+..+.. .+..+.|+|+++++++ +.++.
T Consensus 7 ~h~~~i~~~~~-------~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~l~~~~~~~~ 74 (289)
T cd00200 7 GHTGGVTCVAF-------SPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTG-----PVRDVAASADGTYLASGSSDKT 74 (289)
T ss_pred ccCCCEEEEEE-------cCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCc-----ceeEEEECCCCCEEEEEcCCCe
Confidence 56689999999 66889999999999999999998887777666554 7789999999988775 47999
Q ss_pred EEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEcc
Q 014125 196 VRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSR 275 (430)
Q Consensus 196 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~ 275 (430)
|++|++.... .......|...+.++.|+| .+.++++++.++.|.+||+++++....+..|...+.+++|+|
T Consensus 75 i~i~~~~~~~--------~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 145 (289)
T cd00200 75 IRLWDLETGE--------CVRTLTGHTSYVSSVAFSP-DGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP 145 (289)
T ss_pred EEEEEcCccc--------ceEEEeccCCcEEEEEEcC-CCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcC
Confidence 9999998631 1122245667899999999 467888888899999999998888888888999999999999
Q ss_pred CCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccC
Q 014125 276 DGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAAD 355 (430)
Q Consensus 276 ~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 355 (430)
++.++++++ .|+.|++||++...... .+ ..+...+.++.|+|+++.+++++.|+.|++||+++++.+..+..|..
T Consensus 146 ~~~~l~~~~-~~~~i~i~d~~~~~~~~-~~---~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~ 220 (289)
T cd00200 146 DGTFVASSS-QDGTIKLWDLRTGKCVA-TL---TGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHEN 220 (289)
T ss_pred cCCEEEEEc-CCCcEEEEEccccccce-eE---ecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCC
Confidence 988888777 79999999998664332 22 35677899999999999999999999999999999999999988999
Q ss_pred CeeEEEEcCCCcEEEEeeCCceeeecCC
Q 014125 356 TVNGFSFHPFLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 356 ~v~~~~~~~~~~~l~s~~~d~~~~vw~~ 383 (430)
.+.++.|+|++.++++++.++.+++|+.
T Consensus 221 ~i~~~~~~~~~~~~~~~~~~~~i~i~~~ 248 (289)
T cd00200 221 GVNSVAFSPDGYLLASGSEDGTIRVWDL 248 (289)
T ss_pred ceEEEEEcCCCcEEEEEcCCCcEEEEEc
Confidence 9999999999888888876777777754
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=208.25 Aligned_cols=264 Identities=16% Similarity=0.270 Sum_probs=215.1
Q ss_pred eecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcC
Q 014125 115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYN 193 (430)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d 193 (430)
...+.++|.++.| +-+|++.++++.|.+|++|++..+.++.++..|.. +|..++.+.|+..++ +|.|
T Consensus 13 l~~~qgaV~avry-------N~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~-----EVlD~~~s~Dnskf~s~GgD 80 (307)
T KOG0316|consen 13 LDCAQGAVRAVRY-------NVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGH-----EVLDAALSSDNSKFASCGGD 80 (307)
T ss_pred ecccccceEEEEE-------ccCCCEEEEcCCCceEEeecccccceeeeecCCCc-----eeeeccccccccccccCCCC
Confidence 3456689999999 77999999999999999999999999999999887 999999999998888 6699
Q ss_pred CeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCc--eeeEEeeccccCeEEE
Q 014125 194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM--ELLYVLHGQEGGVTHV 271 (430)
Q Consensus 194 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~--~~~~~~~~~~~~i~~~ 271 (430)
..+.+||+.++ .....+.+|...|+.+.|+. ....+++|+.|.++++||-++. ++++.+......|.++
T Consensus 81 k~v~vwDV~TG--------kv~Rr~rgH~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si 151 (307)
T KOG0316|consen 81 KAVQVWDVNTG--------KVDRRFRGHLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSI 151 (307)
T ss_pred ceEEEEEcccC--------eeeeecccccceeeEEEecC-cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEE
Confidence 99999999984 33344589999999999998 7779999999999999998764 6788888778899999
Q ss_pred EEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccc
Q 014125 272 QFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQ 351 (430)
Q Consensus 272 ~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 351 (430)
..+ +..|++|+ .||+++.||++.+.... .....+|++++|+++++.++.++.|+++++.|-.+|++++.++
T Consensus 152 ~v~--~heIvaGS-~DGtvRtydiR~G~l~s------Dy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYk 222 (307)
T KOG0316|consen 152 DVA--EHEIVAGS-VDGTVRTYDIRKGTLSS------DYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYK 222 (307)
T ss_pred Eec--ccEEEeec-cCCcEEEEEeecceeeh------hhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhc
Confidence 984 55688888 99999999999884321 3356789999999999999999999999999999999999999
Q ss_pred cccCCee--EEEEcCCCcEEEEeeCCceeeecCCCccccccCCCcEEEEeecccccccccCCCCcceeeeeccCcc
Q 014125 352 AAADTVN--GFSFHPFLPMAASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYASMMENADGINGCEFNCQSEHEN 425 (430)
Q Consensus 352 ~~~~~v~--~~~~~~~~~~l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (430)
+|...-. ..+++.....+++|+ +||.|.+||+..+..+..+.-+.......+.+|+.
T Consensus 223 Ghkn~eykldc~l~qsdthV~sgS-----------------EDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~ 281 (307)
T KOG0316|consen 223 GHKNMEYKLDCCLNQSDTHVFSGS-----------------EDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPT 281 (307)
T ss_pred ccccceeeeeeeecccceeEEecc-----------------CCceEEEEEeccceeeeeeccCCceeEEeeecccC
Confidence 9987543 345566556666666 55666666666666655555555443444444443
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-32 Score=225.19 Aligned_cols=295 Identities=17% Similarity=0.262 Sum_probs=232.0
Q ss_pred eeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccc--cccccCcccceeeecCCCeeeeeeeccc
Q 014125 53 FRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACS--LAKDQDSYEASLVVTEGESVYDFCWFPH 130 (430)
Q Consensus 53 ~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 130 (430)
+.....|.-+|.+++++||+++.++++.||+|.-|++.+++......... ...+........ ..|...+.+++.
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r-~~h~keil~~av--- 210 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESR-KGHVKEILTLAV--- 210 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCccc-ccccceeEEEEE---
Confidence 56788999999999999999999999999999999999887552222110 000111111111 267778888888
Q ss_pred cCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCccc
Q 014125 131 MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFE 209 (430)
Q Consensus 131 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~ 209 (430)
++|+++|++|+.|..|.||+..+.+.+..+..|.. .|.+++|-.....++ ++.|+.|++|+++.
T Consensus 211 ----S~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~-----~V~~L~fr~gt~~lys~s~Drsvkvw~~~~------ 275 (479)
T KOG0299|consen 211 ----SSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRG-----AVSSLAFRKGTSELYSASADRSVKVWSIDQ------ 275 (479)
T ss_pred ----cCCCcEEEecCCCceEEEecCcccchhhccccccc-----ceeeeeeecCccceeeeecCCceEEEehhH------
Confidence 88999999999999999999999999999888776 999999976655555 77999999999976
Q ss_pred ccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCe
Q 014125 210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPY 289 (430)
Q Consensus 210 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~ 289 (430)
......+.+|...|..+.... -.+.+.+|+.|+++++|++.. +....+.++.+.+-|++|-.+ ..+++|+ .+|.
T Consensus 276 --~s~vetlyGHqd~v~~IdaL~-reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In~-~HfvsGS-dnG~ 349 (479)
T KOG0299|consen 276 --LSYVETLYGHQDGVLGIDALS-RERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFIND-EHFVSGS-DNGS 349 (479)
T ss_pred --hHHHHHHhCCccceeeechhc-ccceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEecc-cceeecc-CCce
Confidence 334445689999999998887 666777788999999999954 344467788899999999755 4688898 9999
Q ss_pred EEEEeCCCCceEEEEeeccc--------CCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCC----CeecccccccCCe
Q 014125 290 ILCWDLRKAVQVVYKLYRSS--------EHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTG----KWISGFQAAADTV 357 (430)
Q Consensus 290 i~i~d~~~~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~~~~~v 357 (430)
|.+|++...+.......... .+..+|++++..|...++++|+.+|.|++|.+..+ .++..+. -.+-|
T Consensus 350 IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfV 428 (479)
T KOG0299|consen 350 IALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFV 428 (479)
T ss_pred EEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEE
Confidence 99999987755433321111 12238999999999999999999999999999877 4455555 56789
Q ss_pred eEEEEcCCCcEEEEee
Q 014125 358 NGFSFHPFLPMAASSS 373 (430)
Q Consensus 358 ~~~~~~~~~~~l~s~~ 373 (430)
++++|+++|+.+++|.
T Consensus 429 Nsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 429 NSLAFSNSGKRIVAGI 444 (479)
T ss_pred EEEEEccCCCEEEEec
Confidence 9999999999777764
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=226.88 Aligned_cols=281 Identities=14% Similarity=0.194 Sum_probs=214.4
Q ss_pred eecccCCCceeEEEECcCC-ceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccC
Q 014125 54 RTSSIPNNFLKGIKWSPDG-SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS 132 (430)
Q Consensus 54 ~~~~~h~~~v~~~~~sp~~-~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 132 (430)
..+.||.+.|.|++=+|.. ..+|+|+.||.|+|||+....+... +..|.+.|..+++
T Consensus 60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~-----------------f~AH~G~V~Gi~v----- 117 (433)
T KOG0268|consen 60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRT-----------------FKAHEGLVRGICV----- 117 (433)
T ss_pred hhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhe-----------------eecccCceeeEEe-----
Confidence 3568999999999999976 7899999999999999987544333 3345589999998
Q ss_pred ccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccc
Q 014125 133 ASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYS 212 (430)
Q Consensus 133 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~ 212 (430)
+...+++++.|.+|+.|.++.. +..++-... .+..+.-+..+..+++ ..-.|.|||.+...+
T Consensus 118 ----~~~~~~tvgdDKtvK~wk~~~~-p~~tilg~s------~~~gIdh~~~~~~FaT-cGe~i~IWD~~R~~P------ 179 (433)
T KOG0268|consen 118 ----TQTSFFTVGDDKTVKQWKIDGP-PLHTILGKS------VYLGIDHHRKNSVFAT-CGEQIDIWDEQRDNP------ 179 (433)
T ss_pred ----cccceEEecCCcceeeeeccCC-cceeeeccc------cccccccccccccccc-cCceeeecccccCCc------
Confidence 2367999999999999998653 444443322 4445555544545543 345799999976322
Q ss_pred cccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEE
Q 014125 213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILC 292 (430)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i 292 (430)
...+.-....|.++.|+|....+|+++..|+.|.+||+++..++..+. ....-+.|+|+|.+-.+.++. .|..++.
T Consensus 180 --v~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~-ED~nlY~ 255 (433)
T KOG0268|consen 180 --VSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAAN-EDHNLYT 255 (433)
T ss_pred --cceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceee-eeccccceecCccccceeecc-cccccee
Confidence 222233345699999999888999999999999999999999887765 345568899999665566666 9999999
Q ss_pred EeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccccc-ccCCeeEEEEcCCCcEEEE
Q 014125 293 WDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQA-AADTVNGFSFHPFLPMAAS 371 (430)
Q Consensus 293 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s 371 (430)
||++....+.. ...+|.+.|.+++|||.|+-+++||.|.+|+||.++.+.....+.. --..|.++.|+.|.+++++
T Consensus 256 ~DmR~l~~p~~---v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~S 332 (433)
T KOG0268|consen 256 YDMRNLSRPLN---VHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIIS 332 (433)
T ss_pred hhhhhhcccch---hhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEe
Confidence 99998765543 3378999999999999999999999999999999997765433321 1236999999999999999
Q ss_pred eeCCceeeec
Q 014125 372 SSGHRRFPVD 381 (430)
Q Consensus 372 ~~~d~~~~vw 381 (430)
||.|+.|++|
T Consensus 333 GSdd~nvRlW 342 (433)
T KOG0268|consen 333 GSDDGNVRLW 342 (433)
T ss_pred cCCCcceeee
Confidence 9854444444
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-32 Score=234.51 Aligned_cols=258 Identities=18% Similarity=0.256 Sum_probs=219.7
Q ss_pred CCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeE
Q 014125 118 EGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSV 196 (430)
Q Consensus 118 ~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i 196 (430)
++..|.++.++| ....++++-.+|.|.||+.++...+..+..... +|.+..|-+...++++| .|..|
T Consensus 12 rSdRVKsVd~HP-------tePw~la~LynG~V~IWnyetqtmVksfeV~~~-----PvRa~kfiaRknWiv~GsDD~~I 79 (794)
T KOG0276|consen 12 RSDRVKSVDFHP-------TEPWILAALYNGDVQIWNYETQTMVKSFEVSEV-----PVRAAKFIARKNWIVTGSDDMQI 79 (794)
T ss_pred cCCceeeeecCC-------CCceEEEeeecCeeEEEecccceeeeeeeeccc-----chhhheeeeccceEEEecCCceE
Confidence 567899999955 567899999999999999999999999988776 89999999999999966 88999
Q ss_pred EEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCc-eeeEEeeccccCeEEEEEcc
Q 014125 197 RVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-ELLYVLHGQEGGVTHVQFSR 275 (430)
Q Consensus 197 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~-~~~~~~~~~~~~i~~~~~~~ 275 (430)
++|+..+.. ....+..|...|++++.+| ...++++++.|-+|++||.... .+.+++.+|...|++++|+|
T Consensus 80 rVfnynt~e--------kV~~FeAH~DyIR~iavHP-t~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnP 150 (794)
T KOG0276|consen 80 RVFNYNTGE--------KVKTFEAHSDYIRSIAVHP-TLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNP 150 (794)
T ss_pred EEEecccce--------eeEEeeccccceeeeeecC-CCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecC
Confidence 999998742 2334578999999999999 6679999999999999998764 67889999999999999999
Q ss_pred C-CCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCC--CEEEEEccCCcEEEEEcCCCCeeccccc
Q 014125 276 D-GNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSG--RHLGTGGQDGLVHIYDLQTGKWISGFQA 352 (430)
Q Consensus 276 ~-~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 352 (430)
. .+.+++++ -|++|++|.+.++... ++..+|...|+++.+-+.| .+|++|++|..|+|||..+..+++++.+
T Consensus 151 kD~ntFaS~s-LDrTVKVWslgs~~~n----fTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeG 225 (794)
T KOG0276|consen 151 KDPNTFASAS-LDRTVKVWSLGSPHPN----FTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEG 225 (794)
T ss_pred CCccceeeee-ccccEEEEEcCCCCCc----eeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhc
Confidence 5 55788888 9999999999887533 2336899999999998755 6999999999999999999999999999
Q ss_pred ccCCeeEEEEcCCCcEEEEeeCCceeeecCCCc--cccccCCCcEEEEeec
Q 014125 353 AADTVNGFSFHPFLPMAASSSGHRRFPVDDFED--LHLSGDENCVSVWSFL 401 (430)
Q Consensus 353 ~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~--l~~~~~d~~i~~w~~~ 401 (430)
|...|..+.|+|.-+++++|+.||+++||+..+ +-..-.=|.=|+|++.
T Consensus 226 Ht~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~ 276 (794)
T KOG0276|consen 226 HTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIA 276 (794)
T ss_pred ccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEe
Confidence 999999999999999999999999999996544 1122223334556555
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-32 Score=209.63 Aligned_cols=260 Identities=18% Similarity=0.273 Sum_probs=204.4
Q ss_pred eeeeeeeccccCccCCCCceEEEE-----eCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEE--EEEcC
Q 014125 121 SVYDFCWFPHMSASDPTSCVFAST-----TRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKI--FAGYN 193 (430)
Q Consensus 121 ~v~~~~~~~~~~~~~~~~~~l~~~-----~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l--~~~~d 193 (430)
.-+++.|+|.. ++.-.+|++ ...|.+.|.++...+-+..+..... ...+..++|++....+ +++.|
T Consensus 10 ~GysvqfSPf~----~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~---~D~LfdV~Wse~~e~~~~~a~GD 82 (311)
T KOG0277|consen 10 HGYSVQFSPFV----ENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDT---EDGLFDVAWSENHENQVIAASGD 82 (311)
T ss_pred ccceeEecccc----cchhheeehhhcccccCceEEEEecCCCCCeEEEEeeec---ccceeEeeecCCCcceEEEEecC
Confidence 34667787742 111122222 2368899999976655555544332 2378899999876443 36699
Q ss_pred CeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEE
Q 014125 194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQF 273 (430)
Q Consensus 194 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~ 273 (430)
|++++||+..+..+. ...+.|...|.++.|++.....+++++.|++|++|+..-++.+.++.+|...|...+|
T Consensus 83 GSLrl~d~~~~s~Pi-------~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~ 155 (311)
T KOG0277|consen 83 GSLRLFDLTMPSKPI-------HKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAF 155 (311)
T ss_pred ceEEEeccCCCCcch-------hHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEec
Confidence 999999976554332 3346788899999999988889999999999999999999999999999999999999
Q ss_pred ccCC-CEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCC-CCEEEEEccCCcEEEEEcCCC-Ceeccc
Q 014125 274 SRDG-NYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPS-GRHLGTGGQDGLVHIYDLQTG-KWISGF 350 (430)
Q Consensus 274 ~~~~-~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~-~~~~~~ 350 (430)
+|.. +.+++++ .|+.+++||++...+... + ..|...+.++.|+.- ...|++|+.|+.|++||+++- .++..+
T Consensus 156 sp~~~nlfas~S-gd~~l~lwdvr~~gk~~~-i---~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL 230 (311)
T KOG0277|consen 156 SPHIPNLFASAS-GDGTLRLWDVRSPGKFMS-I---EAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFEL 230 (311)
T ss_pred CCCCCCeEEEcc-CCceEEEEEecCCCceeE-E---EeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceee
Confidence 9964 4566666 999999999998765543 2 578889999999974 467999999999999999874 568889
Q ss_pred ccccCCeeEEEEcCCCc-EEEEeeCCceeeecCCCc---------------------------cccccCCCcEEEEe
Q 014125 351 QAAADTVNGFSFHPFLP-MAASSSGHRRFPVDDFED---------------------------LHLSGDENCVSVWS 399 (430)
Q Consensus 351 ~~~~~~v~~~~~~~~~~-~l~s~~~d~~~~vw~~~~---------------------------l~~~~~d~~i~~w~ 399 (430)
.+|.-.|+.++|+|... +|++++.|-+++||+.+. ++++|.|..++||+
T Consensus 231 ~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 231 NGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred cCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence 99999999999999754 889999999999996552 77888888888886
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-32 Score=243.94 Aligned_cols=265 Identities=18% Similarity=0.246 Sum_probs=230.0
Q ss_pred CCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEE
Q 014125 119 GESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVR 197 (430)
Q Consensus 119 ~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~ 197 (430)
+..|..++|+| ....++++-..|.|++||.+-+.++..|..|.+ +|..++|+|++.++++| .|-.|+
T Consensus 9 SsRvKglsFHP-------~rPwILtslHsG~IQlWDYRM~tli~rFdeHdG-----pVRgv~FH~~qplFVSGGDDykIk 76 (1202)
T KOG0292|consen 9 SSRVKGLSFHP-------KRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDG-----PVRGVDFHPTQPLFVSGGDDYKIK 76 (1202)
T ss_pred cccccceecCC-------CCCEEEEeecCceeeeehhhhhhHHhhhhccCC-----ccceeeecCCCCeEEecCCccEEE
Confidence 35788899954 567999999999999999999999999988877 99999999999999955 889999
Q ss_pred EEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCC
Q 014125 198 VFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDG 277 (430)
Q Consensus 198 v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 277 (430)
+|+... ......+.+|-..|+.+.|++ .-.++++++.|.+|+||+..+.+++..+.+|...|+|.+|+|..
T Consensus 77 VWnYk~--------rrclftL~GHlDYVRt~~FHh-eyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptE 147 (1202)
T KOG0292|consen 77 VWNYKT--------RRCLFTLLGHLDYVRTVFFHH-EYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTE 147 (1202)
T ss_pred EEeccc--------ceehhhhccccceeEEeeccC-CCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCcc
Confidence 999977 344555689999999999999 77799999999999999999999999999999999999999999
Q ss_pred CEEEEEecCCCeEEEEeCCCCceE-------------------------EEEeecccCCccceEEEEEcCCCCEEEEEcc
Q 014125 278 NYLYTGGRKDPYILCWDLRKAVQV-------------------------VYKLYRSSEHTNQRILFDIEPSGRHLGTGGQ 332 (430)
Q Consensus 278 ~~l~~~~~~d~~i~i~d~~~~~~~-------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 332 (430)
..+++++ -|.+||+||+..-+.. ....+...+|...|+-++|+|.-.++++|++
T Consensus 148 DlIVSaS-LDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~D 226 (1202)
T KOG0292|consen 148 DLIVSAS-LDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGAD 226 (1202)
T ss_pred ceEEEec-ccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCC
Confidence 9999999 9999999998632110 0011223689999999999999999999999
Q ss_pred CCcEEEEEcCCCCe--ecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCCCc------------------------c
Q 014125 333 DGLVHIYDLQTGKW--ISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFED------------------------L 386 (430)
Q Consensus 333 dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~------------------------l 386 (430)
|..|++|.++..+. +-+..+|.+.|.++-|+|...++++.+.|+.++|||.+. |
T Consensus 227 DRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNL 306 (1202)
T KOG0292|consen 227 DRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNL 306 (1202)
T ss_pred cceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcce
Confidence 99999999986543 667889999999999999999999999999999997654 7
Q ss_pred ccccCCCcEEEEeeccccc
Q 014125 387 HLSGDENCVSVWSFLYASM 405 (430)
Q Consensus 387 ~~~~~d~~i~~w~~~~~~~ 405 (430)
..+|+|+.+.++.++....
T Consensus 307 fAAgHDsGm~VFkleRErp 325 (1202)
T KOG0292|consen 307 FAAGHDSGMIVFKLERERP 325 (1202)
T ss_pred eeeecCCceEEEEEcccCc
Confidence 7889999999998874433
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=216.97 Aligned_cols=280 Identities=19% Similarity=0.272 Sum_probs=234.8
Q ss_pred eeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-c
Q 014125 114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-Y 192 (430)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~ 192 (430)
.+..|..+|++++. +|+.+++++|+.|..-.+|++.++.....+..|.. .|+++.|+.+|.+|++| .
T Consensus 59 tF~~H~~svFavsl-------~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKD-----SVt~~~FshdgtlLATGdm 126 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSL-------HPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKD-----SVTCCSFSHDGTLLATGDM 126 (399)
T ss_pred ehhhcCCceEEEEe-------CCCCceEEecCCCceEEEEEccCCcceeEecCCCC-----ceEEEEEccCceEEEecCC
Confidence 34457789999998 66788999999999999999999998888888876 99999999999999976 8
Q ss_pred CCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEE
Q 014125 193 NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQ 272 (430)
Q Consensus 193 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~ 272 (430)
+|.|+||+..++....... ..-..+.=+.|+| ...+|+.|+.||.+.+|.+.++...+.+.+|..++++=.
T Consensus 127 sG~v~v~~~stg~~~~~~~--------~e~~dieWl~WHp-~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~ 197 (399)
T KOG0296|consen 127 SGKVLVFKVSTGGEQWKLD--------QEVEDIEWLKWHP-RAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGE 197 (399)
T ss_pred CccEEEEEcccCceEEEee--------cccCceEEEEecc-cccEEEeecCCCcEEEEECCCcceeeEecCCCCCccccc
Confidence 9999999998864433221 2234578899999 788999999999999999999888899999999999999
Q ss_pred EccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccc-
Q 014125 273 FSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQ- 351 (430)
Q Consensus 273 ~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~- 351 (430)
|.|+|+.++++. .||+|++|++.++.+.. .+. ........++.++..+..++.|+.++.+++-+..+|+.+....
T Consensus 198 f~pdGKr~~tgy-~dgti~~Wn~ktg~p~~-~~~--~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~ 273 (399)
T KOG0296|consen 198 FIPDGKRILTGY-DDGTIIVWNPKTGQPLH-KIT--QAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNG 273 (399)
T ss_pred ccCCCceEEEEe-cCceEEEEecCCCceeE-Eec--ccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCC
Confidence 999999999999 99999999999985443 332 1224556778888899999999999999999999998877666
Q ss_pred -------cccCC---eeEEEEcCCCcEEEEeeCCceeeecCCCc-----------------------cccccCCCcEEEE
Q 014125 352 -------AAADT---VNGFSFHPFLPMAASSSGHRRFPVDDFED-----------------------LHLSGDENCVSVW 398 (430)
Q Consensus 352 -------~~~~~---v~~~~~~~~~~~l~s~~~d~~~~vw~~~~-----------------------l~~~~~d~~i~~w 398 (430)
.+... |..+.|+..-++.|+|+.||+|.|||... |+++..+|.||.|
T Consensus 274 ~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~w 353 (399)
T KOG0296|consen 274 TVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLNTDYLLTACANGKVRQW 353 (399)
T ss_pred CCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcCcchheeeccCceEEee
Confidence 34443 45555666778999999999999996543 8899999999999
Q ss_pred eecccccccccCCCCcceeee
Q 014125 399 SFLYASMMENADGINGCEFNC 419 (430)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~ 419 (430)
|.++++++....||.. ++.+
T Consensus 354 DaRtG~l~~~y~GH~~-~Il~ 373 (399)
T KOG0296|consen 354 DARTGQLKFTYTGHQM-GILD 373 (399)
T ss_pred eccccceEEEEecCch-heeE
Confidence 9999999999999987 4443
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=239.56 Aligned_cols=302 Identities=14% Similarity=0.141 Sum_probs=206.7
Q ss_pred ecc-cCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCc
Q 014125 55 TSS-IPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (430)
Q Consensus 55 ~~~-~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (430)
... +|.+.|.++.||+||+|||+||.||.|+||.+....... ..... .............+..+.-.+. .
T Consensus 261 e~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~-~~~~~------~~~~~~~~~~~s~~~p~~s~~~--~ 331 (712)
T KOG0283|consen 261 EISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMR-VAEGD------SSCMYFEYNANSQIEPSTSSEE--K 331 (712)
T ss_pred ccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhc-ccccc------cchhhhhhhhccccCccccccc--c
Confidence 444 999999999999999999999999999999986522200 00000 0000000000000000000000 0
Q ss_pred cCCCCceEEEEeCCCcEEEEecc----CCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCccc
Q 014125 134 SDPTSCVFASTTRDHPIHLWDAT----TGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFE 209 (430)
Q Consensus 134 ~~~~~~~l~~~~~dg~i~vwd~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~ 209 (430)
........-.+.....+ +.+.. ..++++.+.+|.. .|..+.|+.++-+|.++.|.+|++|++.... .+.
T Consensus 332 ~~~~~s~~~~~~~s~~~-~~p~~~f~f~ekP~~ef~GHt~-----DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~-CL~ 404 (712)
T KOG0283|consen 332 ISSRTSSSRKGSQSPCV-LLPLKAFVFSEKPFCEFKGHTA-----DILDLSWSKNNFLLSSSMDKTVRLWHPGRKE-CLK 404 (712)
T ss_pred ccccccccccccCCccc-cCCCccccccccchhhhhccch-----hheecccccCCeeEeccccccEEeecCCCcc-eee
Confidence 00000011112222221 11111 2345666666655 9999999988877778899999999997631 111
Q ss_pred ccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCe
Q 014125 210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPY 289 (430)
Q Consensus 210 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~ 289 (430)
...|...|+|++|+|-+.++|++|+-||.|+||++...+.+.-... ..-|++++|.|+|++.++|+ .+|.
T Consensus 405 --------~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl-~~lITAvcy~PdGk~avIGt-~~G~ 474 (712)
T KOG0283|consen 405 --------VFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDL-RDLITAVCYSPDGKGAVIGT-FNGY 474 (712)
T ss_pred --------EEecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhh-hhhheeEEeccCCceEEEEE-eccE
Confidence 1468889999999999999999999999999999988777655553 47899999999999999999 9999
Q ss_pred EEEEeCCCCceEEEEeecc-----cCCccceEEEEEcCCC-CEEEEEccCCcEEEEEcCCCCeecccccccC--CeeEEE
Q 014125 290 ILCWDLRKAVQVVYKLYRS-----SEHTNQRILFDIEPSG-RHLGTGGQDGLVHIYDLQTGKWISGFQAAAD--TVNGFS 361 (430)
Q Consensus 290 i~i~d~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~--~v~~~~ 361 (430)
+++|+....+......... ..+. .|+.+.|.|.. ..|++.+.|.+|+|+|.++..++..|+++.. .-....
T Consensus 475 C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~As 553 (712)
T KOG0283|consen 475 CRFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISAS 553 (712)
T ss_pred EEEEEccCCeEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeee
Confidence 9999998764332221111 1233 79999999854 3477778999999999999999999997655 345678
Q ss_pred EcCCCcEEEEeeCCceeeecCC
Q 014125 362 FHPFLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 362 ~~~~~~~l~s~~~d~~~~vw~~ 383 (430)
|+.+|++|++++.|..|+||+.
T Consensus 554 fs~Dgk~IVs~seDs~VYiW~~ 575 (712)
T KOG0283|consen 554 FSSDGKHIVSASEDSWVYIWKN 575 (712)
T ss_pred EccCCCEEEEeecCceEEEEeC
Confidence 9999999999998777777764
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-33 Score=223.83 Aligned_cols=258 Identities=18% Similarity=0.273 Sum_probs=208.1
Q ss_pred CCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEE
Q 014125 119 GESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVR 197 (430)
Q Consensus 119 ~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~ 197 (430)
...|+|+.+ |...+++|..|.+|++||..+-.+...+.+|.+ .|.|+.| +.+.|++| .|.+|+
T Consensus 197 skgVYClQY---------DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtG-----SVLCLqy--d~rviisGSSDsTvr 260 (499)
T KOG0281|consen 197 SKGVYCLQY---------DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTG-----SVLCLQY--DERVIVSGSSDSTVR 260 (499)
T ss_pred CCceEEEEe---------cchhhhcccccCceEEeccccHHHHHhhhcCCC-----cEEeeec--cceEEEecCCCceEE
Confidence 468999999 777999999999999999999888888888776 8999988 45577755 899999
Q ss_pred EEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCce---eeEEeeccccCeEEEEEc
Q 014125 198 VFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME---LLYVLHGQEGGVTHVQFS 274 (430)
Q Consensus 198 v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~---~~~~~~~~~~~i~~~~~~ 274 (430)
+||++++ .....+.+|...|..+.|+. +++++++.|.++.+||+.... ....+.+|...|+.+.|
T Consensus 261 vWDv~tg--------e~l~tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdf- 328 (499)
T KOG0281|consen 261 VWDVNTG--------EPLNTLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF- 328 (499)
T ss_pred EEeccCC--------chhhHHhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecc-
Confidence 9999984 23334467888999999964 499999999999999998764 34567799999999999
Q ss_pred cCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccccccc
Q 014125 275 RDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAA 354 (430)
Q Consensus 275 ~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 354 (430)
+.+++++++ .|.+|++|++.+.... ....+|...|.|+.+ .|+++++|+.|.+|++||+..|.++..+++|+
T Consensus 329 -d~kyIVsAS-gDRTikvW~~st~efv----Rtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHE 400 (499)
T KOG0281|consen 329 -DDKYIVSAS-GDRTIKVWSTSTCEFV----RTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHE 400 (499)
T ss_pred -ccceEEEec-CCceEEEEeccceeee----hhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchH
Confidence 456999998 9999999999887432 233789999988877 48999999999999999999999999999999
Q ss_pred CCeeEEEEcCCCcEEEEeeCCceeeecCCCc----------cc-cccCCCcEEEEeecccccccccCCCCc
Q 014125 355 DTVNGFSFHPFLPMAASSSGHRRFPVDDFED----------LH-LSGDENCVSVWSFLYASMMENADGING 414 (430)
Q Consensus 355 ~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~----------l~-~~~~d~~i~~w~~~~~~~~~~~~~~~~ 414 (430)
.-|.++.|. .+.+++|+.||.++|||... +. ..-...+=|++.+.+++..-....|.+
T Consensus 401 eLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~fqIvsssHdd 469 (499)
T KOG0281|consen 401 ELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDD 469 (499)
T ss_pred Hhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecceEEEeccCCC
Confidence 999999995 67888888888888886543 11 111233446777776666655555554
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-30 Score=232.26 Aligned_cols=281 Identities=12% Similarity=0.146 Sum_probs=207.8
Q ss_pred CCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCc
Q 014125 60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC 139 (430)
Q Consensus 60 ~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (430)
-..|+....++|+..+++++.+.....|+...+..+...... ...........+|.+.|.+++|+|. +++
T Consensus 20 ~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~----G~~~~~~~~l~GH~~~V~~v~fsP~------d~~ 89 (493)
T PTZ00421 20 FLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDY----GKLASNPPILLGQEGPIIDVAFNPF------DPQ 89 (493)
T ss_pred eeccccccccCCCCCcEeECCceEEEEEecCCceEEeecccc----ccCCCCCceEeCCCCCEEEEEEcCC------CCC
Confidence 344667777888888888898888889987655322111110 0001112345678899999999442 678
Q ss_pred eEEEEeCCCcEEEEeccCCc-------eeeeeecccccccccceEEEEECCCC-cEEE-EEcCCeEEEEEcCCCCCcccc
Q 014125 140 VFASTTRDHPIHLWDATTGL-------LRCTYRAYDAVDEITAAFSVAFNPTG-TKIF-AGYNKSVRVFDVHRPGRDFEK 210 (430)
Q Consensus 140 ~l~~~~~dg~i~vwd~~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~-~~~d~~i~v~d~~~~~~~~~~ 210 (430)
+|++|+.|++|++||+.++. .+..+..|. ..|.+++|+|++ .+|+ ++.|+.|++||+..+.
T Consensus 90 ~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~-----~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~----- 159 (493)
T PTZ00421 90 KLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHT-----KKVGIVSFHPSAMNVLASAGADMVVNVWDVERGK----- 159 (493)
T ss_pred EEEEEeCCCEEEEEecCCCccccccCcceEEecCCC-----CcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCe-----
Confidence 99999999999999997653 334455444 389999999986 5666 5689999999998642
Q ss_pred cccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccC-eEEEEEccCCCEEEEEec---C
Q 014125 211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGG-VTHVQFSRDGNYLYTGGR---K 286 (430)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~~---~ 286 (430)
....+.+|...|.+++|+| ++.+|++++.|++|++||+++++.+..+.+|.+. +..+.|.+++..+++++. .
T Consensus 160 ---~~~~l~~h~~~V~sla~sp-dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~ 235 (493)
T PTZ00421 160 ---AVEVIKCHSDQITSLEWNL-DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQ 235 (493)
T ss_pred ---EEEEEcCCCCceEEEEEEC-CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCC
Confidence 1222356788899999999 6779999999999999999999998888888764 456789998888887652 4
Q ss_pred CCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEc-cCCcEEEEEcCCCCeeccccc-ccCCeeEEEEcC
Q 014125 287 DPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGG-QDGLVHIYDLQTGKWISGFQA-AADTVNGFSFHP 364 (430)
Q Consensus 287 d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~ 364 (430)
|+.|++||+++......... ......+....|++++.+|++|+ .|+.|++||+.+++++..... +..++.+++|.|
T Consensus 236 Dr~VklWDlr~~~~p~~~~~--~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~p 313 (493)
T PTZ00421 236 QRQIMLWDTRKMASPYSTVD--LDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMP 313 (493)
T ss_pred CCeEEEEeCCCCCCceeEec--cCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecc
Confidence 79999999987654432221 12334566678999999998887 599999999999988766543 445788888888
Q ss_pred CC
Q 014125 365 FL 366 (430)
Q Consensus 365 ~~ 366 (430)
..
T Consensus 314 k~ 315 (493)
T PTZ00421 314 KW 315 (493)
T ss_pred cc
Confidence 53
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-29 Score=192.08 Aligned_cols=306 Identities=19% Similarity=0.194 Sum_probs=222.0
Q ss_pred cceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccc
Q 014125 51 NQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH 130 (430)
Q Consensus 51 ~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 130 (430)
..+.++. -+..|++++|+|.|.+.|.|+...+.+|.-...-... ...++..............+|.+.|+|.+|
T Consensus 24 ~~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~--r~~hea~~~pp~v~~kr~khhkgsiyc~~w--- 97 (350)
T KOG0641|consen 24 EAINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDL--RHAHEAAKQPPSVLCKRNKHHKGSIYCTAW--- 97 (350)
T ss_pred EEEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCc--ccccccccCCCeEEeeeccccCccEEEEEe---
Confidence 3344443 3567999999999999999999999999866532111 122222222223333345678899999999
Q ss_pred cCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCC----CcEEEEE--cCCeEEEEEcCCC
Q 014125 131 MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT----GTKIFAG--YNKSVRVFDVHRP 204 (430)
Q Consensus 131 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~--~d~~i~v~d~~~~ 204 (430)
+|+|.++++|+.|.+|++.......+...-....-..|.+.|..++|-.+ +.+|+++ .|..|++-|..++
T Consensus 98 ----s~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g 173 (350)
T KOG0641|consen 98 ----SPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRG 173 (350)
T ss_pred ----cCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCC
Confidence 78999999999999999987655433221111111123348999999644 3556643 5777777777663
Q ss_pred CCcccccccccCCCCCCCcceEEE-EEcCCCCceEEEecCCCeEEEEEcCCceeeEEeec--c-----ccCeEEEEEccC
Q 014125 205 GRDFEKYSTLKGNKEGQAGIMSAI-AFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG--Q-----EGGVTHVQFSRD 276 (430)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~--~-----~~~i~~~~~~~~ 276 (430)
. ....+.+|.+.|.++ .| ++.++++|+.|.+|++||++-..++..+.. | ...|.+++..|.
T Consensus 174 ~--------~~~a~sghtghilalysw---n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdps 242 (350)
T KOG0641|consen 174 Q--------GFHALSGHTGHILALYSW---NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPS 242 (350)
T ss_pred C--------cceeecCCcccEEEEEEe---cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCC
Confidence 2 222346888888776 34 566999999999999999998877766542 2 247999999999
Q ss_pred CCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCC----Ceeccccc
Q 014125 277 GNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTG----KWISGFQA 352 (430)
Q Consensus 277 ~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~ 352 (430)
|++|+++- .|....+||++.+... .....|...|.++.|+|...|+++++.|..|++-|+... -++.....
T Consensus 243 grll~sg~-~dssc~lydirg~r~i----q~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~e 317 (350)
T KOG0641|consen 243 GRLLASGH-ADSSCMLYDIRGGRMI----QRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAE 317 (350)
T ss_pred cceeeecc-CCCceEEEEeeCCcee----eeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEe
Confidence 99999998 9999999999988533 233689999999999999999999999999999998732 22344457
Q ss_pred ccCCeeEEEEcCCCcEEEEeeCCceeeecC
Q 014125 353 AADTVNGFSFHPFLPMAASSSGHRRFPVDD 382 (430)
Q Consensus 353 ~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~ 382 (430)
|.+.+..+.|+|..--+++.+.|.+..+|.
T Consensus 318 hkdk~i~~rwh~~d~sfisssadkt~tlwa 347 (350)
T KOG0641|consen 318 HKDKAIQCRWHPQDFSFISSSADKTATLWA 347 (350)
T ss_pred ccCceEEEEecCccceeeeccCcceEEEec
Confidence 889999999999888777777665555553
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-31 Score=216.86 Aligned_cols=263 Identities=16% Similarity=0.212 Sum_probs=209.3
Q ss_pred eeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCce---eeeeecccccccccceEEEEECCCCcEEE-
Q 014125 114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLL---RCTYRAYDAVDEITAAFSVAFNPTGTKIF- 189 (430)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~- 189 (430)
....|...|+-+.| |++|++||+++.|.+..+|++..... ..++.+|.. +|..+.|+||.++++
T Consensus 219 il~~htdEVWfl~F-------S~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~-----~V~yi~wSPDdryLla 286 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQF-------SHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQ-----PVSYIMWSPDDRYLLA 286 (519)
T ss_pred hHhhCCCcEEEEEE-------cCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccC-----ceEEEEECCCCCeEEe
Confidence 44567889999999 88999999999999999999876544 444444443 999999999999988
Q ss_pred EEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccc-cCe
Q 014125 190 AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE-GGV 268 (430)
Q Consensus 190 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~-~~i 268 (430)
||.+..+.+||+.++... .....++...+.+++|.| ++..+++|+.|+++..||+. +......++-. ..|
T Consensus 287 Cg~~e~~~lwDv~tgd~~-------~~y~~~~~~S~~sc~W~p-Dg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v 357 (519)
T KOG0293|consen 287 CGFDEVLSLWDVDTGDLR-------HLYPSGLGFSVSSCAWCP-DGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKV 357 (519)
T ss_pred cCchHheeeccCCcchhh-------hhcccCcCCCcceeEEcc-CCceeEecCCCCcEEEecCC-cchhhccccccccee
Confidence 568888999999885321 111233567899999999 56689999999999999997 44444444332 468
Q ss_pred EEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeec
Q 014125 269 THVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWIS 348 (430)
Q Consensus 269 ~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 348 (430)
.+++..+||+++++.+ .|..|++|+..+..... ......+|++++.|.+++++++--.+..+++||+...+.+.
T Consensus 358 ~dlait~Dgk~vl~v~-~d~~i~l~~~e~~~dr~-----lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~ 431 (519)
T KOG0293|consen 358 HDLAITYDGKYVLLVT-VDKKIRLYNREARVDRG-----LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVR 431 (519)
T ss_pred EEEEEcCCCcEEEEEe-cccceeeechhhhhhhc-----cccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHH
Confidence 9999999999999999 99999999987753321 12345789999999999999999999999999999999999
Q ss_pred ccccccCC--eeEEEEcC-CCcEEEEeeCCceeeecCCCc--------------------------cccccCCCcEEEEe
Q 014125 349 GFQAAADT--VNGFSFHP-FLPMAASSSGHRRFPVDDFED--------------------------LHLSGDENCVSVWS 399 (430)
Q Consensus 349 ~~~~~~~~--v~~~~~~~-~~~~l~s~~~d~~~~vw~~~~--------------------------l~~~~~d~~i~~w~ 399 (430)
.+.||... +..-+|-- +..++++|+.|+.|+||+... ++++|+||+||||.
T Consensus 432 kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg 511 (519)
T KOG0293|consen 432 KYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWG 511 (519)
T ss_pred HhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEec
Confidence 99999874 44445543 457999999999999995433 88999999999997
Q ss_pred eccc
Q 014125 400 FLYA 403 (430)
Q Consensus 400 ~~~~ 403 (430)
....
T Consensus 512 ~~~~ 515 (519)
T KOG0293|consen 512 PSDN 515 (519)
T ss_pred CCcc
Confidence 6543
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-30 Score=233.73 Aligned_cols=286 Identities=18% Similarity=0.319 Sum_probs=226.2
Q ss_pred eccc-CCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCc
Q 014125 55 TSSI-PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (430)
Q Consensus 55 ~~~~-h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (430)
.+.+ |...+.+..|. +.++++++.|++|++|+..++... .....+|.+.|+++++
T Consensus 202 ~~~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i----------------~~~l~GH~g~V~~l~~------ 257 (537)
T KOG0274|consen 202 VLLGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLI----------------LTRLVGHFGGVWGLAF------ 257 (537)
T ss_pred eecccCcchhhhheee--cCeEEecCCCceeEEeecccceEE----------------EeeccCCCCCceeEEE------
Confidence 3343 56778899998 468999999999999999876432 2225567799999998
Q ss_pred cCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCCcccccc
Q 014125 134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFEKYS 212 (430)
Q Consensus 134 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~~~~~ 212 (430)
...+.+|++|+.|.++++||+.+|++...+..|.. .+.++... ...+++ +.|.+|++|++..+
T Consensus 258 -~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~s-----tv~~~~~~--~~~~~sgs~D~tVkVW~v~n~-------- 321 (537)
T KOG0274|consen 258 -PSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTS-----SVRCLTID--PFLLVSGSRDNTVKVWDVTNG-------- 321 (537)
T ss_pred -ecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCc-----eEEEEEcc--CceEeeccCCceEEEEeccCc--------
Confidence 33478999999999999999999999999998776 77777653 334554 59999999999863
Q ss_pred cccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEE
Q 014125 213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILC 292 (430)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i 292 (430)
.....+.+|.++|.++..+ +.++++|+.|++|++||..+++++..+.+|.+.|.++.+.+. ..+++|+ .|+.|++
T Consensus 322 ~~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs-~D~~Ikv 396 (537)
T KOG0274|consen 322 ACLNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGS-LDTTIKV 396 (537)
T ss_pred ceEEEeccccccEEEEEec---CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeee-eccceEe
Confidence 2233335699999999996 569999999999999999999999999999999999988665 7899999 9999999
Q ss_pred EeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccccc-ccCCeeEEEEcCCCcEEEE
Q 014125 293 WDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQA-AADTVNGFSFHPFLPMAAS 371 (430)
Q Consensus 293 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s 371 (430)
||+++.... .....+|..-+..+.+ .+++|++++.|+.|++||..++++++.+.+ |...|..+++. ...+++
T Consensus 397 Wdl~~~~~c---~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~ 469 (537)
T KOG0274|consen 397 WDLRTKRKC---IHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILC 469 (537)
T ss_pred ecCCchhhh---hhhhcCCccccccccc--ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEE
Confidence 999987322 2233567777755554 478999999999999999999999999998 67888888876 345555
Q ss_pred eeCCceeeecCCCccccccCCCcEEEEeeccccccccc
Q 014125 372 SSGHRRFPVDDFEDLHLSGDENCVSVWSFLYASMMENA 409 (430)
Q Consensus 372 ~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~~~~~~ 409 (430)
++ .|+.+++||+..+.+...+
T Consensus 470 s~-----------------~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 470 SS-----------------DDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred Ee-----------------cCCeeEEEecccCchhhhh
Confidence 55 4556666666655555433
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.2e-30 Score=213.07 Aligned_cols=281 Identities=20% Similarity=0.259 Sum_probs=231.1
Q ss_pred CceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCce
Q 014125 61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV 140 (430)
Q Consensus 61 ~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (430)
..++++...|..+.++||+.|..+.++|.+.++.+..+.+ |...|..+.+ +++...
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~G-----------------h~kki~~v~~-------~~~~~~ 275 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKG-----------------HTKKITSVKF-------HKDLDT 275 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccC-----------------cceEEEEEEe-------ccchhh
Confidence 4578888888878999999999999999998776554444 4578999999 667888
Q ss_pred EEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCcccccccccCCCC
Q 014125 141 FASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKE 219 (430)
Q Consensus 141 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~ 219 (430)
+++++.|..|+||.............|.. +|+.+..+|.|.+|+ ++.|++..+.|++++..... ... .
T Consensus 276 v~~aSad~~i~vws~~~~s~~~~~~~h~~-----~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~----vs~--~ 344 (506)
T KOG0289|consen 276 VITASADEIIRVWSVPLSSEPTSSRPHEE-----PVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTV----VSD--E 344 (506)
T ss_pred eeecCCcceEEeeccccccCccccccccc-----cceeeeeccCCcEEEEecCCceEEEEEccCCcEEEE----Eee--c
Confidence 99999999999999988777666666665 999999999999999 56899999999987532111 110 1
Q ss_pred CCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCc
Q 014125 220 GQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAV 299 (430)
Q Consensus 220 ~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~ 299 (430)
...-.+++.+|+| ++.+|.+|..||.|++||+.++..+..|.+|.++|..++|+.+|-+|++++ .|+.|++||+|..+
T Consensus 345 ~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~a-dd~~V~lwDLRKl~ 422 (506)
T KOG0289|consen 345 TSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAA-DDGSVKLWDLRKLK 422 (506)
T ss_pred cccceeEEeeEcC-CceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEe-cCCeEEEEEehhhc
Confidence 2334589999999 778999999999999999999999999999999999999999999999999 99999999999875
Q ss_pred eEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcC--CCCeecccccccCCeeEEEEcCCCcEEEEeeCCce
Q 014125 300 QVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQ--TGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRR 377 (430)
Q Consensus 300 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~ 377 (430)
...... ......+.++.|++.|.+|+.++.|=+|++++-. .+..+..+..|.+..+++.|....+++++++.|..
T Consensus 423 n~kt~~---l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~ 499 (506)
T KOG0289|consen 423 NFKTIQ---LDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAI 499 (506)
T ss_pred ccceee---ccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhh
Confidence 432221 1223378999999999999999887666666633 56778888889989999999999999999998877
Q ss_pred eeec
Q 014125 378 FPVD 381 (430)
Q Consensus 378 ~~vw 381 (430)
++++
T Consensus 500 l~~~ 503 (506)
T KOG0289|consen 500 LRLY 503 (506)
T ss_pred eEEe
Confidence 7665
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.2e-30 Score=236.38 Aligned_cols=292 Identities=15% Similarity=0.162 Sum_probs=224.9
Q ss_pred CCceeEEEECcCCceEEEec--CCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCC
Q 014125 60 NNFLKGIKWSPDGSSFLTSS--EDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT 137 (430)
Q Consensus 60 ~~~v~~~~~sp~~~~l~s~~--~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 137 (430)
...|.+|+.+|||..+|||+ .||.++||+.+.-......... ...........|.+.|.|+.| ++|
T Consensus 13 ~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~-----~l~k~l~~m~~h~~sv~CVR~-------S~d 80 (942)
T KOG0973|consen 13 EKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNE-----NLPKHLCTMDDHDGSVNCVRF-------SPD 80 (942)
T ss_pred CeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhc-----ccchhheeeccccCceeEEEE-------CCC
Confidence 44689999999999999999 8999999997632111100000 012334456678899999999 889
Q ss_pred CceEEEEeCCCcEEEEeccC-------C-----------ceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEE
Q 014125 138 SCVFASTTRDHPIHLWDATT-------G-----------LLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRV 198 (430)
Q Consensus 138 ~~~l~~~~~dg~i~vwd~~~-------~-----------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v 198 (430)
|.+||+|+.|+.|.+|+... + +....+..|.. .|..++|+|++.+++ ++.|++|.+
T Consensus 81 G~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~-----DV~Dv~Wsp~~~~lvS~s~DnsVii 155 (942)
T KOG0973|consen 81 GSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDS-----DVLDVNWSPDDSLLVSVSLDNSVII 155 (942)
T ss_pred CCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCC-----ccceeccCCCccEEEEecccceEEE
Confidence 99999999999999999873 0 23444555444 899999999999999 569999999
Q ss_pred EEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccc------cCeEEEE
Q 014125 199 FDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE------GGVTHVQ 272 (430)
Q Consensus 199 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~------~~i~~~~ 272 (430)
|+..+- .....+.+|.+.|..+.|.| -+++||+=+.|++|++|+..+....+.+..+. ..+..+.
T Consensus 156 wn~~tF--------~~~~vl~~H~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlS 226 (942)
T KOG0973|consen 156 WNAKTF--------ELLKVLRGHQSLVKGVSWDP-IGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLS 226 (942)
T ss_pred Eccccc--------eeeeeeecccccccceEECC-ccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecc
Confidence 998762 34445689999999999999 77899999999999999988777666665443 3578899
Q ss_pred EccCCCEEEEEecCC---CeEEEEeCCCCceEEEEeecccCCccceEEEEEcCC-------------CC----EEEEEcc
Q 014125 273 FSRDGNYLYTGGRKD---PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPS-------------GR----HLGTGGQ 332 (430)
Q Consensus 273 ~~~~~~~l~~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-------------~~----~l~~~~~ 332 (430)
|||||++|++..... .++.|.+-.+-+.. ....+|..++.++.|+|. .. .+|+|+.
T Consensus 227 WSPDG~~las~nA~n~~~~~~~IieR~tWk~~----~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSq 302 (942)
T KOG0973|consen 227 WSPDGHHLASPNAVNGGKSTIAIIERGTWKVD----KDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQ 302 (942)
T ss_pred cCCCcCeecchhhccCCcceeEEEecCCceee----eeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecC
Confidence 999999999876433 35667665443222 222589999999999982 11 6889999
Q ss_pred CCcEEEEEcCCCCeecccc-cccCCeeEEEEcCCCcEEEEeeCCceeeec
Q 014125 333 DGLVHIYDLQTGKWISGFQ-AAADTVNGFSFHPFLPMAASSSGHRRFPVD 381 (430)
Q Consensus 333 dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw 381 (430)
|++|.||.....+++.... -....|.+++|+|||..|+++|.||.|.+.
T Consensus 303 DrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i 352 (942)
T KOG0973|consen 303 DRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALI 352 (942)
T ss_pred CccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEE
Confidence 9999999998888877654 345689999999999999999976555554
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.6e-30 Score=222.45 Aligned_cols=271 Identities=15% Similarity=0.223 Sum_probs=218.7
Q ss_pred EEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEE
Q 014125 65 GIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFAST 144 (430)
Q Consensus 65 ~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 144 (430)
=++|+. .+.||.|.. ..|++|+..++... ....+. ...|+++.| +++|.+|++|
T Consensus 182 lldWss-~n~laValg-~~vylW~~~s~~v~----------------~l~~~~-~~~vtSv~w-------s~~G~~LavG 235 (484)
T KOG0305|consen 182 LLDWSS-ANVLAVALG-QSVYLWSASSGSVT----------------ELCSFG-EELVTSVKW-------SPDGSHLAVG 235 (484)
T ss_pred Hhhccc-CCeEEEEec-ceEEEEecCCCceE----------------EeEecC-CCceEEEEE-------CCCCCEEEEe
Confidence 367773 457777664 47999998876421 111122 578999999 7799999999
Q ss_pred eCCCcEEEEeccCCceeeeeec-ccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccccccccCCCCCCC
Q 014125 145 TRDHPIHLWDATTGLLRCTYRA-YDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQA 222 (430)
Q Consensus 145 ~~dg~i~vwd~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~ 222 (430)
..+|.|.|||..+.+.+..+.. |.. .|-+++|+ +..+.+| .++.|..+|++....... ...+|.
T Consensus 236 ~~~g~v~iwD~~~~k~~~~~~~~h~~-----rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~-------~~~~H~ 301 (484)
T KOG0305|consen 236 TSDGTVQIWDVKEQKKTRTLRGSHAS-----RVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS-------TLQGHR 301 (484)
T ss_pred ecCCeEEEEehhhccccccccCCcCc-----eeEEEecc--CceEEEecCCCcEEEEEEecchhhhh-------hhhccc
Confidence 9999999999999988888877 443 88999997 4555554 899999999987543222 257899
Q ss_pred cceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCC-EEEEEe-cCCCeEEEEeCCCCce
Q 014125 223 GIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGN-YLYTGG-RKDPYILCWDLRKAVQ 300 (430)
Q Consensus 223 ~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~-~~d~~i~i~d~~~~~~ 300 (430)
..|..++|++ ++.++|+|+.|+.+.|||....++...+..|...|.+++|+|... .||+|+ ..|+.|++||..++..
T Consensus 302 qeVCgLkws~-d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~ 380 (484)
T KOG0305|consen 302 QEVCGLKWSP-DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGAR 380 (484)
T ss_pred ceeeeeEECC-CCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcE
Confidence 9999999999 778999999999999999988899999999999999999999655 555544 3799999999998754
Q ss_pred EEEEeecccCCccceEEEEEcCCCCEEEEE--ccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCcee
Q 014125 301 VVYKLYRSSEHTNQRILFDIEPSGRHLGTG--GQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRF 378 (430)
Q Consensus 301 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~ 378 (430)
.. . ....+.|..+.|++..+-|+++ ..++.|.||+..+.+.+..+.+|...|..++++|+|..+++|+.|.++
T Consensus 381 i~-~----vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETl 455 (484)
T KOG0305|consen 381 ID-S----VDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETL 455 (484)
T ss_pred ec-c----cccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcE
Confidence 32 1 3467889999999988666654 346789999999999999999999999999999999999999865444
Q ss_pred eec
Q 014125 379 PVD 381 (430)
Q Consensus 379 ~vw 381 (430)
++|
T Consensus 456 rfw 458 (484)
T KOG0305|consen 456 RFW 458 (484)
T ss_pred Eec
Confidence 444
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.8e-30 Score=203.17 Aligned_cols=291 Identities=13% Similarity=0.204 Sum_probs=203.2
Q ss_pred cceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccc
Q 014125 51 NQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH 130 (430)
Q Consensus 51 ~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 130 (430)
-...++.+|.+.|++++|+.||++|||++.|++|+||++++... ..+. ..-..+... .-+.+.|
T Consensus 77 l~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~----~eHr------~~R~nve~d---hpT~V~F--- 140 (420)
T KOG2096|consen 77 LNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFEN----KEHR------CIRQNVEYD---HPTRVVF--- 140 (420)
T ss_pred hhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhh----hhhh------HhhccccCC---CceEEEE---
Confidence 34568999999999999999999999999999999999986322 1111 111112222 2344556
Q ss_pred cCccCCCCceEE-EEeCCCcEEEEeccCCc---eeeeeeccc----ccccccceEEEEECCCCcEEE-EEcCCeEEEEEc
Q 014125 131 MSASDPTSCVFA-STTRDHPIHLWDATTGL---LRCTYRAYD----AVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDV 201 (430)
Q Consensus 131 ~~~~~~~~~~l~-~~~~dg~i~vwd~~~~~---~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~ 201 (430)
+||-+-++ ++-...++++|.+...+ ....+.... ...|...+..+-....+.+|+ ++.|..|.+|++
T Consensus 141 ----apDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~l 216 (420)
T KOG2096|consen 141 ----APDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDL 216 (420)
T ss_pred ----CCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEec
Confidence 55655444 44455679999875432 111111111 112334566677777788888 568999999999
Q ss_pred CCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcC---Cc-----eeeEEeeccccCeEEEEE
Q 014125 202 HRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED---NM-----ELLYVLHGQEGGVTHVQF 273 (430)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~---~~-----~~~~~~~~~~~~i~~~~~ 273 (430)
.. ..+. ........-+..+.+| +++++++++..-.|++|..- .| ..+..+++|...|..++|
T Consensus 217 kG--q~L~-------~idtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aF 286 (420)
T KOG2096|consen 217 KG--QLLQ-------SIDTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAF 286 (420)
T ss_pred CC--ceee-------eeccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeee
Confidence 73 2221 1223334456789999 77899999999999999852 22 345678899999999999
Q ss_pred ccCCCEEEEEecCCCeEEEEeCCCCce------EEEEe-ecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCe
Q 014125 274 SRDGNYLYTGGRKDPYILCWDLRKAVQ------VVYKL-YRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKW 346 (430)
Q Consensus 274 ~~~~~~l~~~~~~d~~i~i~d~~~~~~------~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 346 (430)
+|+...+++.+ .||++++||..-... .+... .......+....++++|+|+.||.+. ...++++..++++.
T Consensus 287 sn~S~r~vtvS-kDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~ 364 (420)
T KOG2096|consen 287 SNSSTRAVTVS-KDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKD 364 (420)
T ss_pred CCCcceeEEEe-cCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCcc
Confidence 99999999999 999999999753211 00000 00122334445899999999888664 45799999999988
Q ss_pred ecccc-cccCCeeEEEEcCCCcEEEEee
Q 014125 347 ISGFQ-AAADTVNGFSFHPFLPMAASSS 373 (430)
Q Consensus 347 ~~~~~-~~~~~v~~~~~~~~~~~l~s~~ 373 (430)
.-.+. .|...|.+|+|+++|+++++++
T Consensus 365 ~~~~e~~h~~~Is~is~~~~g~~~atcG 392 (420)
T KOG2096|consen 365 YPELEDIHSTTISSISYSSDGKYIATCG 392 (420)
T ss_pred chhHHHhhcCceeeEEecCCCcEEeeec
Confidence 77664 6889999999999999999997
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.5e-29 Score=199.74 Aligned_cols=282 Identities=17% Similarity=0.239 Sum_probs=214.6
Q ss_pred cceeecccCCCceeEEEECc-CCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecc
Q 014125 51 NQFRTSSIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFP 129 (430)
Q Consensus 51 ~~~~~~~~h~~~v~~~~~sp-~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 129 (430)
+.+.+.....+.|.+|+||| ...+++.+|-||+||+|++.... .........+.++|.+++|
T Consensus 18 kd~ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g---------------~~~~ka~~~~~~PvL~v~W-- 80 (347)
T KOG0647|consen 18 KDYEVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSG---------------QLVPKAQQSHDGPVLDVCW-- 80 (347)
T ss_pred cceecCCCcccchheeEeccccCceEEecccCCceEEEEEecCC---------------cccchhhhccCCCeEEEEE--
Confidence 44556677889999999999 55677789999999999998531 1222344567789999999
Q ss_pred ccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCc--EEEEE-cCCeEEEEEcCCCCC
Q 014125 130 HMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGT--KIFAG-YNKSVRVFDVHRPGR 206 (430)
Q Consensus 130 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~-~d~~i~v~d~~~~~~ 206 (430)
+.||..+++|+.|+.+++||+.+++. ..+..|.. +|..+.|-+... .|++| .|++|+.||++...+
T Consensus 81 -----sddgskVf~g~~Dk~~k~wDL~S~Q~-~~v~~Hd~-----pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~p 149 (347)
T KOG0647|consen 81 -----SDDGSKVFSGGCDKQAKLWDLASGQV-SQVAAHDA-----PVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNP 149 (347)
T ss_pred -----ccCCceEEeeccCCceEEEEccCCCe-eeeeeccc-----ceeEEEEecCCCcceeEecccccceeecccCCCCe
Confidence 88999999999999999999999954 45566655 899999987665 67755 999999999987432
Q ss_pred cccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEE-e-eccccCeEEEEEccCCCEEEEEe
Q 014125 207 DFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYV-L-HGQEGGVTHVQFSRDGNYLYTGG 284 (430)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~-~-~~~~~~i~~~~~~~~~~~l~~~~ 284 (430)
... ..-...+.++..- ..+++++..+..|.+|+++.+..... . ....-.+.|++..++....+.|+
T Consensus 150 v~t---------~~LPeRvYa~Dv~---~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGs 217 (347)
T KOG0647|consen 150 VAT---------LQLPERVYAADVL---YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGS 217 (347)
T ss_pred eee---------eeccceeeehhcc---CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeee
Confidence 211 1122446666653 34899999999999999976543221 1 12234688999999888888888
Q ss_pred cCCCeEEEEeCCCCce---EEEEeecccC----CccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCe
Q 014125 285 RKDPYILCWDLRKAVQ---VVYKLYRSSE----HTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTV 357 (430)
Q Consensus 285 ~~d~~i~i~d~~~~~~---~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v 357 (430)
-+|.+.+..+..+.. ...+..+... .--.|++++|+|.-..|++++.||++.+||-+....++..+.|..+|
T Consensus 218 -iEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpI 296 (347)
T KOG0647|consen 218 -IEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPI 296 (347)
T ss_pred -ecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCcc
Confidence 999999998887522 2222222111 12357889999998999999999999999999888888989999999
Q ss_pred eEEEEcCCCcEEEEee
Q 014125 358 NGFSFHPFLPMAASSS 373 (430)
Q Consensus 358 ~~~~~~~~~~~l~s~~ 373 (430)
++..|+.+|.++|-+.
T Consensus 297 tcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 297 TCCSFNRNGSIFAYAL 312 (347)
T ss_pred ceeEecCCCCEEEEEe
Confidence 9999999999887664
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.8e-30 Score=215.96 Aligned_cols=260 Identities=16% Similarity=0.265 Sum_probs=201.8
Q ss_pred ccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceee----------eeecccccccccceEEE
Q 014125 110 YEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRC----------TYRAYDAVDEITAAFSV 179 (430)
Q Consensus 110 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~----------~~~~~~~~~~~~~v~~~ 179 (430)
......+.|.+.|..+.+.|+ +..++++.+..+.|.|||..+-.... .+.+|.. .-+++
T Consensus 115 v~i~~~i~h~gEVnRaRymPQ------np~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~-----eg~gl 183 (422)
T KOG0264|consen 115 VEISQKINHDGEVNRARYMPQ------NPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEK-----EGYGL 183 (422)
T ss_pred eEEEEeccCCccchhhhhCCC------CCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecc-----ccccc
Confidence 344556788899999999886 45688899999999999986532211 3344433 46789
Q ss_pred EECCCC--cEEEEEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcC--Cc
Q 014125 180 AFNPTG--TKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED--NM 255 (430)
Q Consensus 180 ~~~~~~--~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~--~~ 255 (430)
+|++.. .++.++.|+.|++||+....... ........+.+|...|..++|+|.+..+|++++.|+.+.|||+| +.
T Consensus 184 sWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~-~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~ 262 (422)
T KOG0264|consen 184 SWNRQQEGTLLSGSDDHTICLWDINAESKED-KVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTS 262 (422)
T ss_pred ccccccceeEeeccCCCcEEEEeccccccCC-ccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCC
Confidence 999865 34446699999999998754431 12334455689999999999999999999999999999999999 56
Q ss_pred eeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCC-CEEEEEccCC
Q 014125 256 ELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSG-RHLGTGGQDG 334 (430)
Q Consensus 256 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg 334 (430)
++.....+|.+.|.|++|+|.+.+|+++++.|++|++||+|+..... ....+|...|..+.|+|.. ..||+++.|+
T Consensus 263 ~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~l---h~~e~H~dev~~V~WSPh~etvLASSg~D~ 339 (422)
T KOG0264|consen 263 KPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPL---HTFEGHEDEVFQVEWSPHNETVLASSGTDR 339 (422)
T ss_pred CCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCc---eeccCCCcceEEEEeCCCCCceeEecccCC
Confidence 67778889999999999999877666555589999999999886644 4447899999999999975 6789999999
Q ss_pred cEEEEEcCCC--------------CeecccccccCCeeEEEEcCCCcE-EEEeeCCceeeecCCC
Q 014125 335 LVHIYDLQTG--------------KWISGFQAAADTVNGFSFHPFLPM-AASSSGHRRFPVDDFE 384 (430)
Q Consensus 335 ~i~vwd~~~~--------------~~~~~~~~~~~~v~~~~~~~~~~~-l~s~~~d~~~~vw~~~ 384 (430)
++.|||+..- +++..-.||...|..+.|+|..++ +++.+.|+.+.||...
T Consensus 340 rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 340 RLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred cEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 9999999742 234555689999999999999884 4555555555555443
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.3e-30 Score=207.48 Aligned_cols=242 Identities=17% Similarity=0.196 Sum_probs=190.4
Q ss_pred ecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCc----EEEEE
Q 014125 116 VTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGT----KIFAG 191 (430)
Q Consensus 116 ~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~l~~~ 191 (430)
+.|...|.++.- .+..+++|+.||.+++||. .|+...++.+|.. +|.+++|.-.+. ++.++
T Consensus 102 ~~hdDWVSsv~~---------~~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~-----~ik~v~~v~~n~~~~~fvsas 166 (423)
T KOG0313|consen 102 FLHDDWVSSVKG---------ASKWILTGSYDGTSRIWDL-KGKSIKTIVGHTG-----PIKSVAWVIKNSSSCLFVSAS 166 (423)
T ss_pred ccchhhhhhhcc---------cCceEEEeecCCeeEEEec-CCceEEEEecCCc-----ceeeeEEEecCCccceEEEec
Confidence 345556666543 3679999999999999997 5777888887776 888777743332 44477
Q ss_pred cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcC------------------
Q 014125 192 YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED------------------ 253 (430)
Q Consensus 192 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~------------------ 253 (430)
.|.++++|.++.+........ ...+|...|.++...+ ++..+++|+.|.+|.+|+..
T Consensus 167 ~Dqtl~Lw~~~~~~~~~~~~~----~~~GHk~~V~sVsv~~-sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~ 241 (423)
T KOG0313|consen 167 MDQTLRLWKWNVGENKVKALK----VCRGHKRSVDSVSVDS-SGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQ 241 (423)
T ss_pred CCceEEEEEecCchhhhhHHh----HhcccccceeEEEecC-CCCeEEeecccceeeecccCCCccccccccchhhhhhh
Confidence 999999999987654333222 2249999999999999 77799999999999999922
Q ss_pred -------CceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCE
Q 014125 254 -------NMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRH 326 (430)
Q Consensus 254 -------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 326 (430)
+..++..+.+|..+|.++.|++ ...+++++ .|.+|+.||+.++...... .....+++++.+|..++
T Consensus 242 ~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~S-wDHTIk~WDletg~~~~~~-----~~~ksl~~i~~~~~~~L 314 (423)
T KOG0313|consen 242 KREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVS-WDHTIKVWDLETGGLKSTL-----TTNKSLNCISYSPLSKL 314 (423)
T ss_pred hhhhcccccCceEEecccccceeeEEEcC-CCceEeec-ccceEEEEEeecccceeee-----ecCcceeEeecccccce
Confidence 1135667889999999999988 56788888 9999999999998654322 24567899999999999
Q ss_pred EEEEccCCcEEEEEcCCCC---eecccccccCCeeEEEEcCCCc-EEEEeeCCceeeecCCC
Q 014125 327 LGTGGQDGLVHIYDLQTGK---WISGFQAAADTVNGFSFHPFLP-MAASSSGHRRFPVDDFE 384 (430)
Q Consensus 327 l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~~~vw~~~ 384 (430)
|++|+.|..|++||.+++. ...++.+|.+.|.++.|+|... .|++++.|+++++||..
T Consensus 315 l~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvR 376 (423)
T KOG0313|consen 315 LASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVR 376 (423)
T ss_pred eeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEec
Confidence 9999999999999998763 3567889999999999999766 67777777777777543
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-30 Score=217.11 Aligned_cols=293 Identities=18% Similarity=0.184 Sum_probs=209.1
Q ss_pred eeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCcee-eeeecccccccccceEEEEECCCCcEEE-EE
Q 014125 114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLR-CTYRAYDAVDEITAAFSVAFNPTGTKIF-AG 191 (430)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~ 191 (430)
...++...|.++++ .|.|..|++|+.|.+|++||+...... ..++... ......|.++.|++.+..|+ ++
T Consensus 162 ~l~hgtk~Vsal~~-------Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~-P~E~h~i~sl~ys~Tg~~iLvvs 233 (641)
T KOG0772|consen 162 QLKHGTKIVSALAV-------DPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQ-PCETHQINSLQYSVTGDQILVVS 233 (641)
T ss_pred eccCCceEEEEeee-------cCCCceeeeccccceEEEEecccccccchhhhccC-cccccccceeeecCCCCeEEEEe
Confidence 34456678899998 778999999999999999998754221 1122111 11223889999999998777 56
Q ss_pred cCCeEEEEEcCCCCCc----ccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCce-eeEEee----
Q 014125 192 YNKSVRVFDVHRPGRD----FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME-LLYVLH---- 262 (430)
Q Consensus 192 ~d~~i~v~d~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~-~~~~~~---- 262 (430)
.....+++|-...... ...+..-.....+|...++|.+|+|.....+++++.||++++||+...+ ....+.
T Consensus 234 g~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~ 313 (641)
T KOG0772|consen 234 GSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPA 313 (641)
T ss_pred cCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccC
Confidence 7888999986531100 0011112234478999999999999999999999999999999988654 233332
Q ss_pred -ccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCcc--ceEEEEEcCCCCEEEEEccCCcEEEE
Q 014125 263 -GQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTN--QRILFDIEPSGRHLGTGGQDGLVHIY 339 (430)
Q Consensus 263 -~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~vw 339 (430)
+..-+++.++|+|+|+.|++++ .||.|.+|+........ .+.....|.. .|+++.||++|++|++-+.|+++++|
T Consensus 314 ~g~Rv~~tsC~~nrdg~~iAagc-~DGSIQ~W~~~~~~v~p-~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvW 391 (641)
T KOG0772|consen 314 GGKRVPVTSCAWNRDGKLIAAGC-LDGSIQIWDKGSRTVRP-VMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVW 391 (641)
T ss_pred CCcccCceeeecCCCcchhhhcc-cCCceeeeecCCccccc-ceEeeeccCCCCceeEEEeccccchhhhccCCCceeee
Confidence 2234789999999999999999 99999999986542221 1112245555 89999999999999999999999999
Q ss_pred EcCCC-Ceeccccccc--CCeeEEEEcCCCcEEEEeeCCceeeecCCCccccccCCCcEEEEeecccccccccCCCCcce
Q 014125 340 DLQTG-KWISGFQAAA--DTVNGFSFHPFLPMAASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYASMMENADGINGCE 416 (430)
Q Consensus 340 d~~~~-~~~~~~~~~~--~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~ 416 (430)
|++.. +++.+..+-. -+-+.++|+|+.++|++|+. +.-+...|++.+++-.+-+.+..+.--.. .
T Consensus 392 DLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS-----------~~~~~~~g~L~f~d~~t~d~v~ki~i~~a-S 459 (641)
T KOG0772|consen 392 DLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTS-----------APNGMTAGTLFFFDRMTLDTVYKIDISTA-S 459 (641)
T ss_pred eccccccchhhhcCCCccCCCCccccCCCceEEEeccc-----------ccCCCCCceEEEEeccceeeEEEecCCCc-e
Confidence 99964 4555554432 25688999999999999964 22223455777777776666655554333 3
Q ss_pred eeeeccCccCCC
Q 014125 417 FNCQSEHENLNQ 428 (430)
Q Consensus 417 ~~~~~~~~~~~~ 428 (430)
+.....|+.|||
T Consensus 460 vv~~~WhpkLNQ 471 (641)
T KOG0772|consen 460 VVRCLWHPKLNQ 471 (641)
T ss_pred EEEEeecchhhh
Confidence 344488888888
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-29 Score=197.16 Aligned_cols=273 Identities=18% Similarity=0.263 Sum_probs=211.0
Q ss_pred ccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCC
Q 014125 57 SIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP 136 (430)
Q Consensus 57 ~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 136 (430)
....+.|.++.|+|.++.|+.++.||++++|++.... ....+.|+.++.+.+|.+
T Consensus 10 npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~------------------l~~~~~~~~plL~c~F~d------- 64 (323)
T KOG1036|consen 10 NPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANS------------------LKLKFKHGAPLLDCAFAD------- 64 (323)
T ss_pred CCChhceeeEEEcCcCCcEEEEeccCcEEEEeccchh------------------hhhheecCCceeeeeccC-------
Confidence 3457789999999999999999999999999998653 235667889999999943
Q ss_pred CCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCccccccccc
Q 014125 137 TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLK 215 (430)
Q Consensus 137 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~ 215 (430)
...+++|+.||.|+.+|+.++..... ..|.. ++.++.+++....++ +|+|++|++||.+.... .
T Consensus 65 -~~~~~~G~~dg~vr~~Dln~~~~~~i-gth~~-----~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~--------~ 129 (323)
T KOG1036|consen 65 -ESTIVTGGLDGQVRRYDLNTGNEDQI-GTHDE-----GIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVV--------V 129 (323)
T ss_pred -CceEEEeccCceEEEEEecCCcceee-ccCCC-----ceEEEEeeccCCeEEEcccCccEEEEecccccc--------c
Confidence 56799999999999999998865433 33333 899999997655555 66999999999985211 1
Q ss_pred CCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEee--ccccCeEEEEEccCCCEEEEEecCCCeEEEE
Q 014125 216 GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH--GQEGGVTHVQFSRDGNYLYTGGRKDPYILCW 293 (430)
Q Consensus 216 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~ 293 (430)
.. ......|.++.. .++.|++|+.+..|.+||+++........ ...-.+.++++.|++.-.++++ -||.|.+=
T Consensus 130 ~~-~d~~kkVy~~~v---~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sS-ieGRVavE 204 (323)
T KOG1036|consen 130 GT-FDQGKKVYCMDV---SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSS-IEGRVAVE 204 (323)
T ss_pred cc-cccCceEEEEec---cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEe-ecceEEEE
Confidence 11 112236888888 45589999999999999999875443221 2335689999999888888888 89999886
Q ss_pred eCCCCceEEEEeecccCC---------ccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcC
Q 014125 294 DLRKAVQVVYKLYRSSEH---------TNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHP 364 (430)
Q Consensus 294 d~~~~~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 364 (430)
.++.......+.+.+..| --+|++++|+|--..++||+.||.|.+||+.+.+.+..+......|..++|+.
T Consensus 205 ~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~ 284 (323)
T KOG1036|consen 205 YFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSM 284 (323)
T ss_pred ccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEecc
Confidence 665542211111211222 24788999999988999999999999999999999999988888899999999
Q ss_pred CCcEEEEeeC
Q 014125 365 FLPMAASSSG 374 (430)
Q Consensus 365 ~~~~l~s~~~ 374 (430)
+|.+||.++.
T Consensus 285 dG~~LAia~s 294 (323)
T KOG1036|consen 285 DGSLLAIASS 294 (323)
T ss_pred CCCeEEEEec
Confidence 9999999974
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-29 Score=220.15 Aligned_cols=296 Identities=19% Similarity=0.266 Sum_probs=224.8
Q ss_pred eeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCc-----cCCC
Q 014125 63 LKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA-----SDPT 137 (430)
Q Consensus 63 v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----~~~~ 137 (430)
.-++.|+|....|.+.-.|..++|||+.+.+.+ ......+.|...|+++.-.|.... .-|.
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kv--------------gk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~ 392 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKV--------------GKCSSMLYHSACIWDVENLPCNVHSPTAACLPR 392 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEeccccccc--------------cceeeeeeccceeeeeccccccccCcccccCCc
Confidence 346889999999999999999999999865432 222344556778888877663221 1222
Q ss_pred CceEEEEeCCCcEEEEeccCCceeeeeec-------------c-------------------cccccccceEEEEECCCC
Q 014125 138 SCVFASTTRDHPIHLWDATTGLLRCTYRA-------------Y-------------------DAVDEITAAFSVAFNPTG 185 (430)
Q Consensus 138 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-------------~-------------------~~~~~~~~v~~~~~~~~~ 185 (430)
..|++++.|++|++|++..+..-..+.. . ...+....+.+++.+|++
T Consensus 393 -~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~g 471 (1080)
T KOG1408|consen 393 -GCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDG 471 (1080)
T ss_pred -cceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCc
Confidence 3499999999999999976321111000 0 000123468899999999
Q ss_pred cEEEEE-cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCC--CCceEEEecCCCeEEEEEcCCc-eeeEEe
Q 014125 186 TKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPT--HTGMLAIGSYSQTSAIYREDNM-ELLYVL 261 (430)
Q Consensus 186 ~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~v~~~d~~~~-~~~~~~ 261 (430)
++|++| ..|+++||++.. .........|...|.|+.|+.. +..+||+++.|.-|++||.... .++.++
T Consensus 472 qhLAsGDr~GnlrVy~Lq~--------l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtl 543 (1080)
T KOG1408|consen 472 QHLASGDRGGNLRVYDLQE--------LEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTL 543 (1080)
T ss_pred ceecccCccCceEEEEehh--------hhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhh
Confidence 999988 789999999976 2333445789999999999853 3568999999999999997533 344455
Q ss_pred eccccCeEE-------------------------------------------------EEEccCCCEEEEEecCCCeEEE
Q 014125 262 HGQEGGVTH-------------------------------------------------VQFSRDGNYLYTGGRKDPYILC 292 (430)
Q Consensus 262 ~~~~~~i~~-------------------------------------------------~~~~~~~~~l~~~~~~d~~i~i 292 (430)
.+|...|++ ++..|..+++++++ .|..|+|
T Consensus 544 d~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~c-QDrniri 622 (1080)
T KOG1408|consen 544 DGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVC-QDRNIRI 622 (1080)
T ss_pred cccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEe-cccceEE
Confidence 555555554 44445557888888 9999999
Q ss_pred EeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEe
Q 014125 293 WDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASS 372 (430)
Q Consensus 293 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 372 (430)
||+.++++. +.+.....|.+....+...|.|-||++...|.++.++|..+++++..+.+|...|+++.|.+|-+.|++.
T Consensus 623 f~i~sgKq~-k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISv 701 (1080)
T KOG1408|consen 623 FDIESGKQV-KSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISV 701 (1080)
T ss_pred Eecccccee-eeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheee
Confidence 999998554 3455556788888999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCceeeecCC
Q 014125 373 SGHRRFPVDDF 383 (430)
Q Consensus 373 ~~d~~~~vw~~ 383 (430)
++||-|.||..
T Consensus 702 sgDgCIFvW~l 712 (1080)
T KOG1408|consen 702 SGDGCIFVWKL 712 (1080)
T ss_pred cCCceEEEEEC
Confidence 88777777744
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-29 Score=217.83 Aligned_cols=282 Identities=14% Similarity=0.178 Sum_probs=226.6
Q ss_pred ecceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeee-eeec
Q 014125 50 YNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYD-FCWF 128 (430)
Q Consensus 50 ~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~ 128 (430)
++..+.+.||+..|..+++.+.. .++++|.||++++|+-..++... ......+.+-|.. ++|.
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~---------------~~~~~~~~g~i~~~i~y~ 67 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLE---------------THAFEGPKGFIANSICYA 67 (745)
T ss_pred ceeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCccccc---------------ceecccCcceeeccceec
Confidence 45667899999999999987654 89999999999999876543221 1122223344444 6764
Q ss_pred cccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcc
Q 014125 129 PHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDF 208 (430)
Q Consensus 129 ~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~ 208 (430)
+ .++-.+++|+.|..|.+|.+....+...+..|.. .|.++....++.++.++.|.++++|-+..
T Consensus 68 e------~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~s-----nVC~ls~~~~~~~iSgSWD~TakvW~~~~----- 131 (745)
T KOG0301|consen 68 E------SDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKS-----NVCSLSIGEDGTLISGSWDSTAKVWRIGE----- 131 (745)
T ss_pred c------ccCcceEeecccceEEEEecCCCCchhhhhcccc-----ceeeeecCCcCceEecccccceEEecchh-----
Confidence 3 2556799999999999999999999999998887 89999988888855567999999998753
Q ss_pred cccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCC
Q 014125 209 EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDP 288 (430)
Q Consensus 209 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~ 288 (430)
+.....+|+..|.+++.-|. . .+++|+.|.+|++|.- ++.++++.+|..-|..+++-+++. +++++ .||
T Consensus 132 -----l~~~l~gH~asVWAv~~l~e-~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~-flScs-NDg 200 (745)
T KOG0301|consen 132 -----LVYSLQGHTASVWAVASLPE-N-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH-FLSCS-NDG 200 (745)
T ss_pred -----hhcccCCcchheeeeeecCC-C-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC-eEeec-CCc
Confidence 33346899999999999984 3 8999999999999976 788899999999999999998765 66777 899
Q ss_pred eEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcE
Q 014125 289 YILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPM 368 (430)
Q Consensus 289 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 368 (430)
.|++|++... .. .+..+|.+.+.+++..+++..++++++|++++||+.. ++.+.+.-..-.|+++.+-++|.
T Consensus 201 ~Ir~w~~~ge-~l----~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD- 272 (745)
T KOG0301|consen 201 SIRLWDLDGE-VL----LEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD- 272 (745)
T ss_pred eEEEEeccCc-ee----eeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-
Confidence 9999999543 22 3337899999999988888999999999999999977 77777775555899999888776
Q ss_pred EEEeeCCceeeecC
Q 014125 369 AASSSGHRRFPVDD 382 (430)
Q Consensus 369 l~s~~~d~~~~vw~ 382 (430)
+++|++||.|+||.
T Consensus 273 Ivvg~SDG~VrVfT 286 (745)
T KOG0301|consen 273 IVVGGSDGRVRVFT 286 (745)
T ss_pred EEEeccCceEEEEE
Confidence 45666677777773
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=219.06 Aligned_cols=324 Identities=15% Similarity=0.231 Sum_probs=232.6
Q ss_pred cCCCcee---EEEECc-CCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCc
Q 014125 58 IPNNFLK---GIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (430)
Q Consensus 58 ~h~~~v~---~~~~sp-~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (430)
.|...|. .+..++ .++||+|||.||.|++|++.......... -....-.|...|.++..
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~-----------~~asme~HsDWVNDiiL------ 81 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTP-----------YIASMEHHSDWVNDIIL------ 81 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccc-----------hhhhhhhhHhHHhhHHh------
Confidence 3444455 555554 67789999999999999987543211100 11122346667777766
Q ss_pred cCCCCceEEEEeCCCcEEEEeccCC--ceeeeeecccccccccceEEEEE-CCCCcEEE-EEcCCeEEEEEcCCCCCc-c
Q 014125 134 SDPTSCVFASTTRDHPIHLWDATTG--LLRCTYRAYDAVDEITAAFSVAF-NPTGTKIF-AGYNKSVRVFDVHRPGRD-F 208 (430)
Q Consensus 134 ~~~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~-~~~d~~i~v~d~~~~~~~-~ 208 (430)
-.+++.|+++|.|-+|++|+...+ -+..++..|.. .|.|+++ .++...++ +|-|+.|.+||++.+... .
T Consensus 82 -~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~D-----YVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~ 155 (735)
T KOG0308|consen 82 -CGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKD-----YVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLV 155 (735)
T ss_pred -hcCCCceEEecCCceEEEeecccCcchhHhhhhcccc-----hheeeeecccCceeEEecCCCccEEEEEccCcchhhh
Confidence 446789999999999999999887 45666666655 8999999 66777777 458999999999875321 1
Q ss_pred cccc--cccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecC
Q 014125 209 EKYS--TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRK 286 (430)
Q Consensus 209 ~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 286 (430)
..+. +......++...|++++.++ .+..++.|+..+.+++||.++.+.+..+++|...|..+..++||..+++++ .
T Consensus 156 ~s~n~~t~~sl~sG~k~siYSLA~N~-t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~s-S 233 (735)
T KOG0308|consen 156 ASFNNVTVNSLGSGPKDSIYSLAMNQ-TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSAS-S 233 (735)
T ss_pred hhccccccccCCCCCccceeeeecCC-cceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecC-C
Confidence 1111 11111237888999999999 667999999999999999999999999999999999999999999999999 9
Q ss_pred CCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCC
Q 014125 287 DPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFL 366 (430)
Q Consensus 287 d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 366 (430)
||+|++||+........ ...|...++++..+|+-.++.+|+.||.|+.=|+++......+-....+|..+..+...
T Consensus 234 DgtIrlWdLgqQrCl~T----~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~ 309 (735)
T KOG0308|consen 234 DGTIRLWDLGQQRCLAT----YIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHD 309 (735)
T ss_pred CceEEeeeccccceeee----EEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhcccc
Confidence 99999999998755543 24678889999999999999999999999999998742211111122233333333222
Q ss_pred cEEEEeeCCceeeec-------------------------------------------------CCCccccccCCCcEEE
Q 014125 367 PMAASSSGHRRFPVD-------------------------------------------------DFEDLHLSGDENCVSV 397 (430)
Q Consensus 367 ~~l~s~~~d~~~~vw-------------------------------------------------~~~~l~~~~~d~~i~~ 397 (430)
+-+-+++.|+.|+-| |...++|-...|.+.+
T Consensus 310 ~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~l 389 (735)
T KOG0308|consen 310 NSVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGNVAL 389 (735)
T ss_pred CCceeeeccccceecCCccccccccCCCCCcccccCCCccccccCCCceeccCchhhhhhhhhcCcceEeeecCCCCEEE
Confidence 222333334444444 2223667778899999
Q ss_pred EeecccccccccC
Q 014125 398 WSFLYASMMENAD 410 (430)
Q Consensus 398 w~~~~~~~~~~~~ 410 (430)
||+-....++.+.
T Consensus 390 wDIl~~~~~~d~g 402 (735)
T KOG0308|consen 390 WDILACVKVEDFG 402 (735)
T ss_pred EEeeeeeehhhcc
Confidence 9998777766655
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-29 Score=208.98 Aligned_cols=265 Identities=17% Similarity=0.315 Sum_probs=203.9
Q ss_pred eecccCCCceeEEEECcC-CceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccC
Q 014125 54 RTSSIPNNFLKGIKWSPD-GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS 132 (430)
Q Consensus 54 ~~~~~h~~~v~~~~~sp~-~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 132 (430)
.....|.+.|+.+++-|. ...+|+.+..+.|.|||..+......... .........+|...-++++|++.
T Consensus 118 ~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~-------~~~Pdl~L~gH~~eg~glsWn~~-- 188 (422)
T KOG0264|consen 118 SQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASG-------ECRPDLRLKGHEKEGYGLSWNRQ-- 188 (422)
T ss_pred EEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccc-------cCCCceEEEeecccccccccccc--
Confidence 344579999999999995 45777888899999999976433221110 11222345556666888999764
Q ss_pred ccCCCCceEEEEeCCCcEEEEeccCCce-------eeeeecccccccccceEEEEECCCCcEEE--EEcCCeEEEEEcCC
Q 014125 133 ASDPTSCVFASTTRDHPIHLWDATTGLL-------RCTYRAYDAVDEITAAFSVAFNPTGTKIF--AGYNKSVRVFDVHR 203 (430)
Q Consensus 133 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~~~d~~i~v~d~~~ 203 (430)
....|++++.|+.|++||+..... ...+..|. ..|..++|++-...++ ++.|+.+.|||+++
T Consensus 189 ----~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~-----~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~ 259 (422)
T KOG0264|consen 189 ----QEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHE-----DVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRS 259 (422)
T ss_pred ----cceeEeeccCCCcEEEEeccccccCCccccceEEeecCC-----cceehhhccccchhhheeecCCCeEEEEEcCC
Confidence 345799999999999999976433 23344444 4899999999876665 56999999999996
Q ss_pred CCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCc-eeeEEeeccccCeEEEEEccCCCEEEE
Q 014125 204 PGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-ELLYVLHGQEGGVTHVQFSRDGNYLYT 282 (430)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~ 282 (430)
. . ........+|...+.|++|+|.+..+||+|+.|++|.+||+|+. +++..+.+|...|.++.|+|+...+++
T Consensus 260 ~-~-----~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLA 333 (422)
T KOG0264|consen 260 N-T-----SKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLA 333 (422)
T ss_pred C-C-----CCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeE
Confidence 2 1 23444557899999999999999999999999999999999985 578899999999999999998765554
Q ss_pred EecCCCeEEEEeCCCCce----------EEEEeecccCCccceEEEEEcCCCCE-EEEEccCCcEEEEEcC
Q 014125 283 GGRKDPYILCWDLRKAVQ----------VVYKLYRSSEHTNQRILFDIEPSGRH-LGTGGQDGLVHIYDLQ 342 (430)
Q Consensus 283 ~~~~d~~i~i~d~~~~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~vwd~~ 342 (430)
+++.|+.+.+||+..-.. +...++...+|...|..+.|+|+..+ |++.++|+.+.||++.
T Consensus 334 SSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 334 SSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred ecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 444999999999964322 22234566899999999999998765 7888999999999986
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7e-29 Score=216.07 Aligned_cols=243 Identities=21% Similarity=0.358 Sum_probs=202.8
Q ss_pred CCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCC
Q 014125 59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS 138 (430)
Q Consensus 59 h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 138 (430)
+.+.|+++.|+++|++||+|..+|.|.|||..+.+.... +..+|...|-+++| .+
T Consensus 216 ~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~----------------~~~~h~~rvg~laW---------~~ 270 (484)
T KOG0305|consen 216 GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRT----------------LRGSHASRVGSLAW---------NS 270 (484)
T ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEehhhcccccc----------------ccCCcCceeEEEec---------cC
Confidence 378899999999999999999999999999987644322 23336789999999 36
Q ss_pred ceEEEEeCCCcEEEEeccCCceeee-eecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccccccccC
Q 014125 139 CVFASTTRDHPIHLWDATTGLLRCT-YRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKG 216 (430)
Q Consensus 139 ~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~ 216 (430)
..+.+|+.|+.|..+|+...+.... +..|.. .|..++|++|+.++++| .|+.+.|||.... ....
T Consensus 271 ~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~q-----eVCgLkws~d~~~lASGgnDN~~~Iwd~~~~--------~p~~ 337 (484)
T KOG0305|consen 271 SVLSSGSRDGKILNHDVRISQHVVSTLQGHRQ-----EVCGLKWSPDGNQLASGGNDNVVFIWDGLSP--------EPKF 337 (484)
T ss_pred ceEEEecCCCcEEEEEEecchhhhhhhhcccc-----eeeeeEECCCCCeeccCCCccceEeccCCCc--------cccE
Confidence 6899999999999999988765554 444444 99999999999999955 9999999999552 3334
Q ss_pred CCCCCCcceEEEEEcCCCCceEEEec--CCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEE-ecCCCeEEEE
Q 014125 217 NKEGQAGIMSAIAFSPTHTGMLAIGS--YSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTG-GRKDPYILCW 293 (430)
Q Consensus 217 ~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~~d~~i~i~ 293 (430)
.+..|...|.+++|+|....+||+|+ .|+.|++||..++..+..+. ....|.+|.|++..+.|+++ |..++.|.||
T Consensus 338 ~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw 416 (484)
T KOG0305|consen 338 TFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLW 416 (484)
T ss_pred EEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEE
Confidence 45788999999999999899999965 59999999999999988876 45789999999998766654 4467899999
Q ss_pred eCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCC
Q 014125 294 DLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTG 344 (430)
Q Consensus 294 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 344 (430)
+..+.... ....+|...|..++++|||..+++|+.|.++++|++-..
T Consensus 417 ~~ps~~~~----~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 417 KYPSMKLV----AELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred ecccccee----eeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 99885433 333689999999999999999999999999999998764
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-28 Score=193.02 Aligned_cols=241 Identities=13% Similarity=0.196 Sum_probs=193.5
Q ss_pred CCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE--cCC
Q 014125 118 EGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG--YNK 194 (430)
Q Consensus 118 ~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~--~d~ 194 (430)
....|.++.| +++|..+++++.|.++++||..+++.+.++..... .+..++|......++ ++ .|.
T Consensus 13 ~~~~i~sl~f-------s~~G~~litss~dDsl~LYd~~~g~~~~ti~skky-----G~~~~~Fth~~~~~i~sStk~d~ 80 (311)
T KOG1446|consen 13 TNGKINSLDF-------SDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKY-----GVDLACFTHHSNTVIHSSTKEDD 80 (311)
T ss_pred CCCceeEEEe-------cCCCCEEEEecCCCeEEEEEcCCCceeeEeecccc-----cccEEEEecCCceEEEccCCCCC
Confidence 3478999999 78999999999999999999999999988877655 666777766655555 44 589
Q ss_pred eEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEc
Q 014125 195 SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFS 274 (430)
Q Consensus 195 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~ 274 (430)
+|+..++... .....+.||...|.+++.+| .+..+++++.|++|++||++..++...+... .-..++|+
T Consensus 81 tIryLsl~dN--------kylRYF~GH~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~--~~pi~AfD 149 (311)
T KOG1446|consen 81 TIRYLSLHDN--------KYLRYFPGHKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS--GRPIAAFD 149 (311)
T ss_pred ceEEEEeecC--------ceEEEcCCCCceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCceEEecC--CCcceeEC
Confidence 9999999873 34445689999999999999 6689999999999999999988777666533 33567999
Q ss_pred cCCCEEEEEecCCCeEEEEeCCCCceEEEEeecc-cCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccc
Q 014125 275 RDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRS-SEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAA 353 (430)
Q Consensus 275 ~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 353 (430)
|.|-++|++. ..+.|++||++....-....+.. .......+.+.|||+|++|+.++..+.+++.|.-+|..+..+.++
T Consensus 150 p~GLifA~~~-~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~ 228 (311)
T KOG1446|consen 150 PEGLIFALAN-GSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGY 228 (311)
T ss_pred CCCcEEEEec-CCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeec
Confidence 9999998888 66699999999763332222222 255677889999999999999999999999999999999888877
Q ss_pred cCCe---eEEEEcCCCcEEEEeeCCceeeecC
Q 014125 354 ADTV---NGFSFHPFLPMAASSSGHRRFPVDD 382 (430)
Q Consensus 354 ~~~v---~~~~~~~~~~~l~s~~~d~~~~vw~ 382 (430)
...- .+..|.|+++++++|+.||++.+|+
T Consensus 229 ~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~ 260 (311)
T KOG1446|consen 229 PNAGNLPLSATFTPDSKFVLSGSDDGTIHVWN 260 (311)
T ss_pred cCCCCcceeEEECCCCcEEEEecCCCcEEEEE
Confidence 6532 5778999999999998654444443
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-29 Score=217.30 Aligned_cols=306 Identities=16% Similarity=0.219 Sum_probs=228.3
Q ss_pred ccCCCCCcceeee--cceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceee
Q 014125 38 RFDVPPHRTYHFY--NQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLV 115 (430)
Q Consensus 38 ~~~~~~~~~~~~~--~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (430)
.-.+|..+.++|| .+...+.||++.|++|+..|.|.+||+|+.||+|+||.+.++.++...
T Consensus 376 iPkLPsp~dLrPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~----------------- 438 (733)
T KOG0650|consen 376 IPKLPSPKDLRPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTV----------------- 438 (733)
T ss_pred cccCCChhhcCCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEE-----------------
Confidence 3445666666666 466789999999999999999999999999999999999988654332
Q ss_pred ecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCcee---------e-------------eeec-------
Q 014125 116 VTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLR---------C-------------TYRA------- 166 (430)
Q Consensus 116 ~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~---------~-------------~~~~------- 166 (430)
...+.|.+++|+| .++-..||++-... +.+.+..-|..+ . .+..
T Consensus 439 -~~d~~I~~vaw~P-----~~~~~vLAvA~~~~-~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~ 511 (733)
T KOG0650|consen 439 -QFDSEIRSVAWNP-----LSDLCVLAVAVGEC-VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELE 511 (733)
T ss_pred -eecceeEEEEecC-----CCCceeEEEEecCc-eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhc
Confidence 2335899999988 44455566554444 555543322100 0 0000
Q ss_pred ---ccccccccceEEEEECCCCcEEEEE----cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEE
Q 014125 167 ---YDAVDEITAAFSVAFNPTGTKIFAG----YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLA 239 (430)
Q Consensus 167 ---~~~~~~~~~v~~~~~~~~~~~l~~~----~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 239 (430)
.....+...|..+.|+..|.+|++. ....|.|.++.... .+..+....+.+.++.|+| ...+|+
T Consensus 512 ~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~--------sQ~PF~kskG~vq~v~FHP-s~p~lf 582 (733)
T KOG0650|consen 512 KGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRK--------SQSPFRKSKGLVQRVKFHP-SKPYLF 582 (733)
T ss_pred cceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEeccccc--------ccCchhhcCCceeEEEecC-CCceEE
Confidence 0111234578899999999999942 34679999987632 2222344456799999999 555666
Q ss_pred EecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEE
Q 014125 240 IGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFD 319 (430)
Q Consensus 240 ~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~ 319 (430)
+++ ...|++||+.....++.+......|..++.+|.|..|++++ .|+.+..||+.-...+...+ ..|...+++++
T Consensus 583 VaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs-~d~k~~WfDldlsskPyk~l---r~H~~avr~Va 657 (733)
T KOG0650|consen 583 VAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGS-YDKKMCWFDLDLSSKPYKTL---RLHEKAVRSVA 657 (733)
T ss_pred EEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEec-CCCeeEEEEcccCcchhHHh---hhhhhhhhhhh
Confidence 555 47899999998888887776777899999999999999999 99999999998775554333 57889999999
Q ss_pred EcCCCCEEEEEccCCcEEEEEcC------C---CCeecccccccCC----eeEEEEcCCCcEEEEeeCCceeeec
Q 014125 320 IEPSGRHLGTGGQDGLVHIYDLQ------T---GKWISGFQAAADT----VNGFSFHPFLPMAASSSGHRRFPVD 381 (430)
Q Consensus 320 ~~~~~~~l~~~~~dg~i~vwd~~------~---~~~~~~~~~~~~~----v~~~~~~~~~~~l~s~~~d~~~~vw 381 (430)
|++.-.++++|+.||.+.|+.-. . --+++.+++|... |....|||...+|++++.||++++|
T Consensus 658 ~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 658 FHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred hccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 99998999999999999998632 1 1246778888765 8999999999999999987776665
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-29 Score=199.12 Aligned_cols=294 Identities=15% Similarity=0.191 Sum_probs=227.1
Q ss_pred eecceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeec
Q 014125 49 FYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWF 128 (430)
Q Consensus 49 ~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 128 (430)
.+...+.+.||.+.|+.++-......+.+++.|.+.+||.++++.++.... +|.+.|.++.|
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~-----------------GH~GSVNsikf- 198 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYT-----------------GHTGSVNSIKF- 198 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeec-----------------ccccceeeEEe-
Confidence 456778999999999999998877899999999999999999887654443 45589999999
Q ss_pred cccCccCCCCceEEEEeCCCcEEEEec------cCC--------c-ee--------------------eeeecccccccc
Q 014125 129 PHMSASDPTSCVFASTTRDHPIHLWDA------TTG--------L-LR--------------------CTYRAYDAVDEI 173 (430)
Q Consensus 129 ~~~~~~~~~~~~l~~~~~dg~i~vwd~------~~~--------~-~~--------------------~~~~~~~~~~~~ 173 (430)
++.+.++++++.|++..||.. ... + .. ...+...-.+|.
T Consensus 199 ------h~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~ 272 (481)
T KOG0300|consen 199 ------HNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHR 272 (481)
T ss_pred ------ccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccc
Confidence 667899999999999999972 110 0 00 000000111234
Q ss_pred cceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEc
Q 014125 174 TAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRE 252 (430)
Q Consensus 174 ~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~ 252 (430)
..|.+..|-..|+.++ ++.|.+..+||++++ .+...+.+|....+.++-+| ..+++++++.|.+.++||+
T Consensus 273 ~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtg--------e~v~~LtGHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDF 343 (481)
T KOG0300|consen 273 AVVSACDWLAGGQQMVTASWDRTANLWDVETG--------EVVNILTGHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDF 343 (481)
T ss_pred cceEehhhhcCcceeeeeeccccceeeeeccC--------ceeccccCcchhccccccCC-cceEEEEeccCceeEeccc
Confidence 4677888888888888 569999999999884 44455689999999999999 8889999999999999999
Q ss_pred CCc-eeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEc
Q 014125 253 DNM-ELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGG 331 (430)
Q Consensus 253 ~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 331 (430)
+.. ..+..|++|...|+++.|..+.+ +++++ .|.+|++||+++...++..+ ...++++.++.+..+..|+.--
T Consensus 344 ReaI~sV~VFQGHtdtVTS~vF~~dd~-vVSgS-DDrTvKvWdLrNMRsplATI----RtdS~~NRvavs~g~~iIAiPh 417 (481)
T KOG0300|consen 344 REAIQSVAVFQGHTDTVTSVVFNTDDR-VVSGS-DDRTVKVWDLRNMRSPLATI----RTDSPANRVAVSKGHPIIAIPH 417 (481)
T ss_pred hhhcceeeeecccccceeEEEEecCCc-eeecC-CCceEEEeeeccccCcceee----ecCCccceeEeecCCceEEecc
Confidence 854 45778999999999999987664 77888 99999999999887665554 3456788899998888899888
Q ss_pred cCCcEEEEEcCCCCeec----ccccccCCeeEEEEcCCCc--EEEEeeCCceeeec
Q 014125 332 QDGLVHIYDLQTGKWIS----GFQAAADTVNGFSFHPFLP--MAASSSGHRRFPVD 381 (430)
Q Consensus 332 ~dg~i~vwd~~~~~~~~----~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~~~vw 381 (430)
.+..|++||++..++.. .-++|...|++++|..+-. -|++++.|..+.-|
T Consensus 418 DNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW 473 (481)
T KOG0300|consen 418 DNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGW 473 (481)
T ss_pred CCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeee
Confidence 88899999998544322 3357888999999975443 34445444433333
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-28 Score=213.78 Aligned_cols=346 Identities=13% Similarity=0.211 Sum_probs=255.6
Q ss_pred eecceeecccCCCceeEEEECcCCc---eEEEecCCCeEEEEeCCCCCCcc----cccccccccc----c------Cccc
Q 014125 49 FYNQFRTSSIPNNFLKGIKWSPDGS---SFLTSSEDKTLRIFSLPENGISY----DVNACSLAKD----Q------DSYE 111 (430)
Q Consensus 49 ~~~~~~~~~~h~~~v~~~~~sp~~~---~l~s~~~dg~v~iw~~~~~~~~~----~~~~~~~~~~----~------~~~~ 111 (430)
.|.....+.||.+.|.+++|...+. +||++|.|..||||.+.-+.... +......... . .-..
T Consensus 180 ~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~ 259 (764)
T KOG1063|consen 180 SFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISF 259 (764)
T ss_pred ceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEeh
Confidence 4566788999999999999987443 89999999999999985443211 0000000000 0 0001
Q ss_pred ceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCC--ceeeeeecccccccccceEEEEECCCCcEEE
Q 014125 112 ASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTG--LLRCTYRAYDAVDEITAAFSVAFNPTGTKIF 189 (430)
Q Consensus 112 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 189 (430)
..+..+|...|+++.| +|.+..|++++.|.++.+|...+. -.+...+.....+.....++..|+|++..++
T Consensus 260 eall~GHeDWV~sv~W-------~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii 332 (764)
T KOG1063|consen 260 EALLMGHEDWVYSVWW-------HPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVII 332 (764)
T ss_pred hhhhcCcccceEEEEE-------ccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEE
Confidence 1244589999999999 567888999999999999998765 3333333332222233578899999998888
Q ss_pred E-EcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCc----eeeEEeecc
Q 014125 190 A-GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM----ELLYVLHGQ 264 (430)
Q Consensus 190 ~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~----~~~~~~~~~ 264 (430)
+ |..|..++|....+ ..-.......+|...|+.++|+| .+.+|++.+.|.+-++|-.-.. ..+..-+-|
T Consensus 333 ~~g~~Gg~hlWkt~d~-----~~w~~~~~iSGH~~~V~dv~W~p-sGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiH 406 (764)
T KOG1063|consen 333 AHGRTGGFHLWKTKDK-----TFWTQEPVISGHVDGVKDVDWDP-SGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIH 406 (764)
T ss_pred EecccCcEEEEeccCc-----cceeeccccccccccceeeeecC-CCCEEEEeccccceeeecccccccceeeecccccc
Confidence 5 68999999983221 11234445689999999999999 6779999999999999865421 233444568
Q ss_pred ccCeEEEEEccCCCEEEEEecCCCeEEEEeCCC-------------------------------------------Cce-
Q 014125 265 EGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRK-------------------------------------------AVQ- 300 (430)
Q Consensus 265 ~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~-------------------------------------------~~~- 300 (430)
...++|++|-+....+++++ ....+|+|+... +..
T Consensus 407 GyDl~c~~~vn~~~~FVSgA-dEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~ 485 (764)
T KOG1063|consen 407 GYDLTCLSFVNEDLQFVSGA-DEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEA 485 (764)
T ss_pred cccceeeehccCCceeeecc-cceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccccccccccc
Confidence 88999999988666677777 889999997521 000
Q ss_pred ---EEE-------------------------EeecccCCccceEEEEEcCCCCEEEEEccCC-----cEEEEEcCCCCee
Q 014125 301 ---VVY-------------------------KLYRSSEHTNQRILFDIEPSGRHLGTGGQDG-----LVHIYDLQTGKWI 347 (430)
Q Consensus 301 ---~~~-------------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~~ 347 (430)
... ...+..+|...|.+++.+|+|+++|+++... .|++|+..+...+
T Consensus 486 ~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~ 565 (764)
T KOG1063|consen 486 AVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQV 565 (764)
T ss_pred ceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhh
Confidence 000 0011236888999999999999999998653 4999999999999
Q ss_pred cccccccCCeeEEEEcCCCcEEEEeeCCceeeecCC-----------------------------CccccccCCCcEEEE
Q 014125 348 SGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDF-----------------------------EDLHLSGDENCVSVW 398 (430)
Q Consensus 348 ~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~-----------------------------~~l~~~~~d~~i~~w 398 (430)
+.+.+|.-.|+.++|+||+++|++.+.|+++.+|.. ..++|++.|.+|++|
T Consensus 566 ~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW 645 (764)
T KOG1063|consen 566 QELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVW 645 (764)
T ss_pred heecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEE
Confidence 999999999999999999999999999999999922 128999999999999
Q ss_pred eeccc--ccccc
Q 014125 399 SFLYA--SMMEN 408 (430)
Q Consensus 399 ~~~~~--~~~~~ 408 (430)
..... +.+..
T Consensus 646 ~~~~~~d~~i~~ 657 (764)
T KOG1063|consen 646 EEPDLRDKYISR 657 (764)
T ss_pred eccCchhhhhhh
Confidence 99876 55544
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8e-28 Score=217.37 Aligned_cols=243 Identities=15% Similarity=0.126 Sum_probs=175.9
Q ss_pred CCCCceEEEEeCCCcEEEEeccCCceeeeeec--------ccccccccceEEEEECC-CCcEEE-EEcCCeEEEEEcCCC
Q 014125 135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRA--------YDAVDEITAAFSVAFNP-TGTKIF-AGYNKSVRVFDVHRP 204 (430)
Q Consensus 135 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--------~~~~~~~~~v~~~~~~~-~~~~l~-~~~d~~i~v~d~~~~ 204 (430)
++++..+++++.+.....|+...+..+..+.. ....+|...|.+++|+| ++.+|+ ++.|++|++||+...
T Consensus 29 ~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~ 108 (493)
T PTZ00421 29 LWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEE 108 (493)
T ss_pred cCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCC
Confidence 34656677777777777777554432211110 00123445899999999 777787 559999999999764
Q ss_pred CCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEe
Q 014125 205 GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGG 284 (430)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 284 (430)
+.... .......+.+|...|.+++|+|.+.++|++|+.|++|++||+++++....+..|...|.+++|+|+|.+|++++
T Consensus 109 ~~~~~-~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs 187 (493)
T PTZ00421 109 GLTQN-ISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTS 187 (493)
T ss_pred ccccc-cCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEec
Confidence 32110 11122335688999999999997678999999999999999999999989999999999999999999999999
Q ss_pred cCCCeEEEEeCCCCceEEEEeecccCCccc-eEEEEEcCCCCEEEEEc----cCCcEEEEEcCCCC-eeccccccc-CCe
Q 014125 285 RKDPYILCWDLRKAVQVVYKLYRSSEHTNQ-RILFDIEPSGRHLGTGG----QDGLVHIYDLQTGK-WISGFQAAA-DTV 357 (430)
Q Consensus 285 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~----~dg~i~vwd~~~~~-~~~~~~~~~-~~v 357 (430)
.|+.|++||++++.... .+ ..|... ...+.|.+++..+++++ .|+.|++||+++.. ++.....+. ..+
T Consensus 188 -~Dg~IrIwD~rsg~~v~-tl---~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~ 262 (493)
T PTZ00421 188 -KDKKLNIIDPRDGTIVS-SV---EAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSAL 262 (493)
T ss_pred -CCCEEEEEECCCCcEEE-EE---ecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCce
Confidence 99999999999875432 22 345443 45678899887777654 47899999998754 333333232 356
Q ss_pred eEEEEcCCCcEEEEee-CCceeeecCC
Q 014125 358 NGFSFHPFLPMAASSS-GHRRFPVDDF 383 (430)
Q Consensus 358 ~~~~~~~~~~~l~s~~-~d~~~~vw~~ 383 (430)
....|++++++|++++ .|+.|++|+.
T Consensus 263 ~~~~~d~d~~~L~lggkgDg~Iriwdl 289 (493)
T PTZ00421 263 FIPFFDEDTNLLYIGSKGEGNIRCFEL 289 (493)
T ss_pred EEEEEcCCCCEEEEEEeCCCeEEEEEe
Confidence 6678999999998887 3666666654
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-27 Score=181.40 Aligned_cols=262 Identities=18% Similarity=0.270 Sum_probs=200.1
Q ss_pred cceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccC------Cceee----eeecccccccccceEEEE
Q 014125 111 EASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATT------GLLRC----TYRAYDAVDEITAAFSVA 180 (430)
Q Consensus 111 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~------~~~~~----~~~~~~~~~~~~~v~~~~ 180 (430)
+....+.....|++++| .|.|.+.++|+...++++-.... +.... .........|.+.|+|.+
T Consensus 24 ~~i~~l~dsqairav~f-------hp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ 96 (350)
T KOG0641|consen 24 EAINILEDSQAIRAVAF-------HPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTA 96 (350)
T ss_pred EEEEEecchhheeeEEe-------cCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEE
Confidence 33444556678999999 66899999999999998875432 11000 111111223456999999
Q ss_pred ECCCCcEEEEE-cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCC---CCceEEEec-CCCeEEEEEcCCc
Q 014125 181 FNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPT---HTGMLAIGS-YSQTSAIYREDNM 255 (430)
Q Consensus 181 ~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~-~dg~v~~~d~~~~ 255 (430)
|+|.|++|++| .|++|++.-++...... .-....+..|.+.|..++|..+ ++.+|++++ .|..|++-|-..+
T Consensus 97 ws~~geliatgsndk~ik~l~fn~dt~~~---~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g 173 (350)
T KOG0641|consen 97 WSPCGELIATGSNDKTIKVLPFNADTCNA---TGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRG 173 (350)
T ss_pred ecCccCeEEecCCCceEEEEecccccccc---cCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCC
Confidence 99999999966 89999998776532211 1223345678899999999653 355666654 4778888899999
Q ss_pred eeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccC---CccceEEEEEcCCCCEEEEEcc
Q 014125 256 ELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSE---HTNQRILFDIEPSGRHLGTGGQ 332 (430)
Q Consensus 256 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~ 332 (430)
+....+.+|.+-|.++- +-+|-.+++++ .|.+|++||++-+......-..... ..+.|.+++..|.|++|++|-.
T Consensus 174 ~~~~a~sghtghilaly-swn~~m~~sgs-qdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~ 251 (350)
T KOG0641|consen 174 QGFHALSGHTGHILALY-SWNGAMFASGS-QDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHA 251 (350)
T ss_pred CcceeecCCcccEEEEE-EecCcEEEccC-CCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccC
Confidence 99999999999998763 34677788888 9999999999977554332222222 2467999999999999999999
Q ss_pred CCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCCC
Q 014125 333 DGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFE 384 (430)
Q Consensus 333 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~ 384 (430)
|....+||++.++.++.+..|...|.++.|+|...++.+++.|..|++-|+.
T Consensus 252 dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlq 303 (350)
T KOG0641|consen 252 DSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ 303 (350)
T ss_pred CCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecc
Confidence 9999999999999999999999999999999999999999999999998654
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-27 Score=217.58 Aligned_cols=230 Identities=10% Similarity=0.119 Sum_probs=170.5
Q ss_pred EEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCC-CcEEE-EEcCCeEEEEEcCCCCCcccccccccCCCCC
Q 014125 143 STTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT-GTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEG 220 (430)
Q Consensus 143 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~ 220 (430)
.|+.++.|++|+......+..+..|.. .|.+++|+|+ +.+|+ ++.|+.|++||+...+............+.+
T Consensus 49 gGG~~gvI~L~~~~r~~~v~~L~gH~~-----~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~g 123 (568)
T PTZ00420 49 GGGLIGAIRLENQMRKPPVIKLKGHTS-----SILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKG 123 (568)
T ss_pred CCCceeEEEeeecCCCceEEEEcCCCC-----CEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeec
Confidence 466788999999887777777776655 9999999997 67777 5589999999997643211111111223467
Q ss_pred CCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCce
Q 014125 221 QAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQ 300 (430)
Q Consensus 221 ~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~ 300 (430)
|...|.+++|+|++..++++++.|++|++||+++++....+. |...|.+++|+|+|.+|++++ .|+.|++||++++..
T Consensus 124 H~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s-~D~~IrIwD~Rsg~~ 201 (568)
T PTZ00420 124 HKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTC-VGKHMHIIDPRKQEI 201 (568)
T ss_pred CCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEe-cCCEEEEEECCCCcE
Confidence 889999999999766678899999999999999998777776 567899999999999999988 899999999998754
Q ss_pred EEEEeecccCCccce-----EEEEEcCCCCEEEEEccCC----cEEEEEcCC-CCeecccccc--cCCeeEEEEcCCCcE
Q 014125 301 VVYKLYRSSEHTNQR-----ILFDIEPSGRHLGTGGQDG----LVHIYDLQT-GKWISGFQAA--ADTVNGFSFHPFLPM 368 (430)
Q Consensus 301 ~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~~dg----~i~vwd~~~-~~~~~~~~~~--~~~v~~~~~~~~~~~ 368 (430)
. ..+ .+|.+.+ ....|++++.+|++++.|+ .|+|||+++ .+++..+..+ .+.+......+++.+
T Consensus 202 i-~tl---~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l 277 (568)
T PTZ00420 202 A-SSF---HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLI 277 (568)
T ss_pred E-EEE---ecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCE
Confidence 3 232 3555443 2334568889999888774 699999995 5566554322 233333444556888
Q ss_pred EEEeeCCceeeecCC
Q 014125 369 AASSSGHRRFPVDDF 383 (430)
Q Consensus 369 l~s~~~d~~~~vw~~ 383 (430)
+++|+.|+.+++|+.
T Consensus 278 ~lsGkGD~tIr~~e~ 292 (568)
T PTZ00420 278 YLIGKGDGNCRYYQH 292 (568)
T ss_pred EEEEECCCeEEEEEc
Confidence 888887776666654
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.7e-28 Score=217.69 Aligned_cols=249 Identities=18% Similarity=0.302 Sum_probs=180.5
Q ss_pred ecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccC
Q 014125 78 SSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATT 157 (430)
Q Consensus 78 ~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 157 (430)
|+.++.|++|+..... ......+|...|.+++|+|. ++.+|++|+.||+|++||+.+
T Consensus 50 GG~~gvI~L~~~~r~~-----------------~v~~L~gH~~~V~~lafsP~------~~~lLASgS~DgtIrIWDi~t 106 (568)
T PTZ00420 50 GGLIGAIRLENQMRKP-----------------PVIKLKGHTSSILDLQFNPC------FSEILASGSEDLTIRVWEIPH 106 (568)
T ss_pred CCceeEEEeeecCCCc-----------------eEEEEcCCCCCEEEEEEcCC------CCCEEEEEeCCCeEEEEECCC
Confidence 5667888888875321 12234467789999999442 367999999999999999986
Q ss_pred Cce--------eeeeecccccccccceEEEEECCCCcEE-E-EEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEE
Q 014125 158 GLL--------RCTYRAYDAVDEITAAFSVAFNPTGTKI-F-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSA 227 (430)
Q Consensus 158 ~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~ 227 (430)
+.. ...+..|. ..|.+++|+|++..+ + ++.|+.|++||++.+.... .+ .+...|.+
T Consensus 107 ~~~~~~~i~~p~~~L~gH~-----~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~----~i-----~~~~~V~S 172 (568)
T PTZ00420 107 NDESVKEIKDPQCILKGHK-----KKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAF----QI-----NMPKKLSS 172 (568)
T ss_pred CCccccccccceEEeecCC-----CcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEE----EE-----ecCCcEEE
Confidence 421 22333333 489999999998765 4 4589999999998743211 11 13457999
Q ss_pred EEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEE-----EEEccCCCEEEEEecCCC----eEEEEeCCCC
Q 014125 228 IAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTH-----VQFSRDGNYLYTGGRKDP----YILCWDLRKA 298 (430)
Q Consensus 228 ~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~-----~~~~~~~~~l~~~~~~d~----~i~i~d~~~~ 298 (430)
++|+| ++.+|++++.|+.|++||+++++.+..+.+|.+.+.+ ..|++++.+|++++ .|+ .|++||++..
T Consensus 173 lswsp-dG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG-~d~~~~R~VkLWDlr~~ 250 (568)
T PTZ00420 173 LKWNI-KGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTG-FSKNNMREMKLWDLKNT 250 (568)
T ss_pred EEECC-CCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEE-cCCCCccEEEEEECCCC
Confidence 99999 6678999999999999999999999999999876543 33568889999988 553 7999999965
Q ss_pred ceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCe--ecccccccCCeeEEEEcCCCc
Q 014125 299 VQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKW--ISGFQAAADTVNGFSFHPFLP 367 (430)
Q Consensus 299 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~ 367 (430)
..+.... ....+.+.+......++|.++++|+.|+.|++|++..+.. +..+. +..++.+++|.|...
T Consensus 251 ~~pl~~~-~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~-s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 251 TSALVTM-SIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYK-SCSPFRSFGFLPKQI 319 (568)
T ss_pred CCceEEE-EecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecccc-cCCCccceEEccccc
Confidence 4443332 2233344444444456689999999999999999987643 22222 556889999999643
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-28 Score=217.79 Aligned_cols=279 Identities=16% Similarity=0.208 Sum_probs=221.2
Q ss_pred ccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCC
Q 014125 57 SIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP 136 (430)
Q Consensus 57 ~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 136 (430)
.+|....+.|+|.|+|++|++++.||.|++|+...... .+.....++..|.+++-
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e----------------~P~ti~~~g~~v~~ia~--------- 64 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEE----------------EPETIDISGELVSSIAC--------- 64 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCccc----------------CCchhhccCceeEEEee---------
Confidence 57899999999999999999999999999998764311 01111115678888765
Q ss_pred CCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCccccccccc
Q 014125 137 TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLK 215 (430)
Q Consensus 137 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~ 215 (430)
.+++|++|+.+++|.+|...+++.-..+..... ++.+++++.+|+++++| .|-.|++.++... ...
T Consensus 65 ~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftl-----p~r~~~v~g~g~~iaagsdD~~vK~~~~~D~--------s~~ 131 (933)
T KOG1274|consen 65 YSNHFLTGSEQNTVLRYKFPSGEEDTILARFTL-----PIRDLAVSGSGKMIAAGSDDTAVKLLNLDDS--------SQE 131 (933)
T ss_pred cccceEEeeccceEEEeeCCCCCccceeeeeec-----cceEEEEecCCcEEEeecCceeEEEEecccc--------chh
Confidence 566999999999999999998876544444433 88899999999999955 8889999998773 334
Q ss_pred CCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeecc--------ccCeEEEEEccCCCEEEEEecCC
Q 014125 216 GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ--------EGGVTHVQFSRDGNYLYTGGRKD 287 (430)
Q Consensus 216 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~--------~~~i~~~~~~~~~~~l~~~~~~d 287 (430)
..+.+|..+|.++.|+| .+++||+.+.||.|++||+.++.....+.+- ...+..++|+|+|..+++.+ .|
T Consensus 132 ~~lrgh~apVl~l~~~p-~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~-~d 209 (933)
T KOG1274|consen 132 KVLRGHDAPVLQLSYDP-KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPP-VD 209 (933)
T ss_pred eeecccCCceeeeeEcC-CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeec-cC
Confidence 45689999999999999 7889999999999999999988766554421 34577899999988888888 89
Q ss_pred CeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCc
Q 014125 288 PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLP 367 (430)
Q Consensus 288 ~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 367 (430)
+.|++|+..+.... ..+. ...+...+..++|+|+|+|||+++.||.|.|||.++.+. ......|.+++|.|+.+
T Consensus 210 ~~Vkvy~r~~we~~-f~Lr-~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n 283 (933)
T KOG1274|consen 210 NTVKVYSRKGWELQ-FKLR-DKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNAN 283 (933)
T ss_pred CeEEEEccCCceeh-eeec-ccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCC
Confidence 99999998877433 2332 234455599999999999999999999999999998322 23345899999999999
Q ss_pred EEEEeeCCceeeec
Q 014125 368 MAASSSGHRRFPVD 381 (430)
Q Consensus 368 ~l~s~~~d~~~~vw 381 (430)
.+-.-...|...+|
T Consensus 284 ~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 284 AITLITALGTLGVS 297 (933)
T ss_pred eeEEEeeccccccC
Confidence 77777777777666
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.7e-28 Score=210.53 Aligned_cols=305 Identities=18% Similarity=0.280 Sum_probs=226.9
Q ss_pred eecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeee----cCCCeeeeeeecc
Q 014125 54 RTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVV----TEGESVYDFCWFP 129 (430)
Q Consensus 54 ~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~ 129 (430)
..+.||.+.|+++.|+|.+..|+++|.|.++.+|...+..-+ ......+ +....-+...|
T Consensus 261 all~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGi--------------Wv~~vRlGe~gg~a~GF~g~lw-- 324 (764)
T KOG1063|consen 261 ALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGI--------------WVDVVRLGEVGGSAGGFWGGLW-- 324 (764)
T ss_pred hhhcCcccceEEEEEccchhhheecccCcceEEEecCCccce--------------EEEEEEeecccccccceeeEEE--
Confidence 456799999999999999999999999999999987653110 0011111 22234777788
Q ss_pred ccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCcc
Q 014125 130 HMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDF 208 (430)
Q Consensus 130 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~ 208 (430)
+|+++.+++-+..|-.++|....... .. ......+|...|..++|+|.|++|+ +|.|-+-|+|---.....+
T Consensus 325 -----~~n~~~ii~~g~~Gg~hlWkt~d~~~-w~-~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~w 397 (764)
T KOG1063|consen 325 -----SPNSNVIIAHGRTGGFHLWKTKDKTF-WT-QEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEW 397 (764)
T ss_pred -----cCCCCEEEEecccCcEEEEeccCccc-ee-eccccccccccceeeeecCCCCEEEEeccccceeeecccccccce
Confidence 66788999999999999999332211 11 1112224556999999999999888 6678776665332000000
Q ss_pred c-------------------------------------------------------------------------------
Q 014125 209 E------------------------------------------------------------------------------- 209 (430)
Q Consensus 209 ~------------------------------------------------------------------------------- 209 (430)
.
T Consensus 398 HEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~ 477 (764)
T KOG1063|consen 398 HEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPG 477 (764)
T ss_pred eeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccc
Confidence 0
Q ss_pred -----------------------------------ccccccCCCCCCCcceEEEEEcCCCCceEEEecCCC-----eEEE
Q 014125 210 -----------------------------------KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ-----TSAI 249 (430)
Q Consensus 210 -----------------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~v~~ 249 (430)
..-+-...+.+|...|.+++.+| .++++|+++... .|++
T Consensus 478 e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~ehAvI~l 556 (764)
T KOG1063|consen 478 ETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISP-TGNLIASACKSSLKEHAVIRL 556 (764)
T ss_pred ccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecC-CCCEEeehhhhCCccceEEEE
Confidence 00000112367888999999999 788999987653 5899
Q ss_pred EEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEE
Q 014125 250 YREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGT 329 (430)
Q Consensus 250 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 329 (430)
|+..+....+.+..|.-.|+.++|||||++|++.+ .|.++.+|...........+.....|..-|+++.|+|++.+++|
T Consensus 557 w~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvs-RDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaT 635 (764)
T KOG1063|consen 557 WNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVS-RDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFAT 635 (764)
T ss_pred EeccchhhhheecccceEEEEEEECCCCcEEEEee-cCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEE
Confidence 99999988889999999999999999999999999 99999999986654443333345789999999999999999999
Q ss_pred EccCCcEEEEEcCCC--Ceecc--cccccCCeeEEEEcCC-----CcEEEEeeCCceeeecCC
Q 014125 330 GGQDGLVHIYDLQTG--KWISG--FQAAADTVNGFSFHPF-----LPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 330 ~~~dg~i~vwd~~~~--~~~~~--~~~~~~~v~~~~~~~~-----~~~l~s~~~d~~~~vw~~ 383 (430)
+|.|..|+||..... +.+.. ...+..+|+.++|.|- +..++.|-..|.|.+|..
T Consensus 636 aSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~ 698 (764)
T KOG1063|consen 636 ASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRR 698 (764)
T ss_pred ecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEec
Confidence 999999999999877 43333 2347789999999872 337788888999999953
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-27 Score=185.77 Aligned_cols=263 Identities=15% Similarity=0.221 Sum_probs=218.1
Q ss_pred eeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-c
Q 014125 114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-Y 192 (430)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~ 192 (430)
...+|..+++.+.| +.+|.+|.+++.|.+..||-..+|+.+.++.+|.. .|+++..+-+.+.+++| .
T Consensus 5 ~l~GHERplTqiKy-------N~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtG-----avW~~Did~~s~~liTGSA 72 (327)
T KOG0643|consen 5 LLQGHERPLTQIKY-------NREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTG-----AVWCCDIDWDSKHLITGSA 72 (327)
T ss_pred ccccCccccceEEe-------cCCCcEEEEecCCCCceEEEecCCceeeeecCCCc-----eEEEEEecCCcceeeeccc
Confidence 34567889999999 77999999999999999999999999999998887 99999999999999965 8
Q ss_pred CCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecC-----CCeEEEEEcC-------CceeeEE
Q 014125 193 NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY-----SQTSAIYRED-------NMELLYV 260 (430)
Q Consensus 193 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg~v~~~d~~-------~~~~~~~ 260 (430)
|.++++||+.++.... . -....+|..+.|++ ++++++.... .+.|.++|++ ..++...
T Consensus 73 D~t~kLWDv~tGk~la----~-----~k~~~~Vk~~~F~~-~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~k 142 (327)
T KOG0643|consen 73 DQTAKLWDVETGKQLA----T-----WKTNSPVKRVDFSF-GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLK 142 (327)
T ss_pred cceeEEEEcCCCcEEE----E-----eecCCeeEEEeecc-CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEE
Confidence 9999999998853321 1 12245799999999 5556655543 4679999988 4456778
Q ss_pred eeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEE
Q 014125 261 LHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYD 340 (430)
Q Consensus 261 ~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd 340 (430)
+..+...++.+-|.|-+++|++|. .||.|.+||++++...+... ..|...|+.++++|+..++++++.|.+-++||
T Consensus 143 I~t~~skit~a~Wg~l~~~ii~Gh-e~G~is~~da~~g~~~v~s~---~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D 218 (327)
T KOG0643|consen 143 IPTPDSKITSALWGPLGETIIAGH-EDGSISIYDARTGKELVDSD---EEHSSKINDLQFSRDRTYFITGSKDTTAKLVD 218 (327)
T ss_pred ecCCccceeeeeecccCCEEEEec-CCCcEEEEEcccCceeeech---hhhccccccccccCCcceEEecccCccceeee
Confidence 888889999999999999999999 99999999999986655433 56888999999999999999999999999999
Q ss_pred cCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeec---------------------------------------
Q 014125 341 LQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVD--------------------------------------- 381 (430)
Q Consensus 341 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw--------------------------------------- 381 (430)
..+-+.++++. ...||++.+++|....++.++.....-|-
T Consensus 219 ~~tl~v~Kty~-te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhP 297 (327)
T KOG0643|consen 219 VRTLEVLKTYT-TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHP 297 (327)
T ss_pred ccceeeEEEee-ecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECC
Confidence 99999999887 45699999999988888877665444332
Q ss_pred CCCccccccCCCcEEEEeeccc
Q 014125 382 DFEDLHLSGDENCVSVWSFLYA 403 (430)
Q Consensus 382 ~~~~l~~~~~d~~i~~w~~~~~ 403 (430)
+....+++|+||.||+.-|...
T Consensus 298 dGksYsSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 298 DGKSYSSGGEDGYVRLHHFDSN 319 (327)
T ss_pred CCcccccCCCCceEEEEEeccc
Confidence 2333788888999988876643
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.7e-28 Score=189.89 Aligned_cols=301 Identities=17% Similarity=0.254 Sum_probs=219.7
Q ss_pred ecccCCCceeEEEECc-CCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCc
Q 014125 55 TSSIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (430)
Q Consensus 55 ~~~~h~~~v~~~~~sp-~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (430)
+...|.+.|+++...+ .|+|+++|+.||.|.+||++.......... . ....-.........|.-.|.++.|.|.
T Consensus 38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~l-i-~k~~c~v~~~h~~~Hky~iss~~WyP~--- 112 (397)
T KOG4283|consen 38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGL-I-AKHKCIVAKQHENGHKYAISSAIWYPI--- 112 (397)
T ss_pred eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccc-e-eheeeeccccCCccceeeeeeeEEeee---
Confidence 4468999999999998 799999999999999999975432111000 0 000000111223345668999999986
Q ss_pred cCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCC---cEEEEE-cCCeEEEEEcCCCCCccc
Q 014125 134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG---TKIFAG-YNKSVRVFDVHRPGRDFE 209 (430)
Q Consensus 134 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~-~d~~i~v~d~~~~~~~~~ 209 (430)
|...|.+++.|.+++|||..+-+....|+... .|++-+++|-. .++++| .+-.|++.|+..+
T Consensus 113 ---DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~------~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG----- 178 (397)
T KOG4283|consen 113 ---DTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEG------KVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG----- 178 (397)
T ss_pred ---cCceeecccccceEEEeecccceeeEEeecCc------eeehhhcChhhhcceEEEEecCCCcEEEEeccCC-----
Confidence 66689999999999999999988877776654 78888888854 355666 7889999999874
Q ss_pred ccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCc-eeeEE--------------eeccccCeEEEEEc
Q 014125 210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-ELLYV--------------LHGQEGGVTHVQFS 274 (430)
Q Consensus 210 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~-~~~~~--------------~~~~~~~i~~~~~~ 274 (430)
.....+.+|...|.++.|+|.....|++|+.||.|++||++.. .+... -..|.+.+..++|.
T Consensus 179 ---s~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~t 255 (397)
T KOG4283|consen 179 ---SFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWT 255 (397)
T ss_pred ---cceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeec
Confidence 4455568999999999999988889999999999999998754 22222 23577889999999
Q ss_pred cCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCcc----ceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccc
Q 014125 275 RDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTN----QRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGF 350 (430)
Q Consensus 275 ~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 350 (430)
.++.++++.+ .|..+++|+..++......... ..|.. .+. +. +.+...++---.++.+.++++-++..+..+
T Consensus 256 Sd~~~l~~~g-td~r~r~wn~~~G~ntl~~~g~-~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l 331 (397)
T KOG4283|consen 256 SDARYLASCG-TDDRIRVWNMESGRNTLREFGP-IIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRL 331 (397)
T ss_pred ccchhhhhcc-CccceEEeecccCccccccccc-ccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEee
Confidence 9999999999 9999999999887654332211 11111 111 22 222233333345588999999999999999
Q ss_pred ccccCCeeEEEEcCCCcEEEEeeCCceeeec
Q 014125 351 QAAADTVNGFSFHPFLPMAASSSGHRRFPVD 381 (430)
Q Consensus 351 ~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw 381 (430)
..|...|.+.++.|+-+...++..|+.+.-|
T Consensus 332 ~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w 362 (397)
T KOG4283|consen 332 STHLKRINCAAYRPDFEQCFTGDMNGNIYMW 362 (397)
T ss_pred ecccceeeEEeecCchhhhhccccCCccccc
Confidence 9998899999999977666666654444444
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-28 Score=204.39 Aligned_cols=240 Identities=24% Similarity=0.319 Sum_probs=197.9
Q ss_pred CCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEE
Q 014125 119 GESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVR 197 (430)
Q Consensus 119 ~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~ 197 (430)
...|.+++|+|. +|. -+|+.+.- .+.+|+..+......+..... .++++.|-.||+++++| ..|.|+
T Consensus 26 ~~~vssl~fsp~----~P~--d~aVt~S~-rvqly~~~~~~~~k~~srFk~-----~v~s~~fR~DG~LlaaGD~sG~V~ 93 (487)
T KOG0310|consen 26 HNSVSSLCFSPK----HPY--DFAVTSSV-RVQLYSSVTRSVRKTFSRFKD-----VVYSVDFRSDGRLLAAGDESGHVK 93 (487)
T ss_pred cCcceeEecCCC----CCC--ceEEeccc-EEEEEecchhhhhhhHHhhcc-----ceeEEEeecCCeEEEccCCcCcEE
Confidence 368999999775 232 35555444 499999888777666655554 89999999999999987 789999
Q ss_pred EEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCC
Q 014125 198 VFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDG 277 (430)
Q Consensus 198 v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 277 (430)
+||+.+ ..+...+.+|+.++..+.|+|++..++++|+.|+.+++||+.+......+.+|+..|.+.+|+|-.
T Consensus 94 vfD~k~--------r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~ 165 (487)
T KOG0310|consen 94 VFDMKS--------RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPAN 165 (487)
T ss_pred Eecccc--------HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCC
Confidence 999654 233344578999999999999999999999999999999999988777899999999999999976
Q ss_pred C-EEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCC-CeecccccccC
Q 014125 278 N-YLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTG-KWISGFQAAAD 355 (430)
Q Consensus 278 ~-~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~ 355 (430)
. .+++|+ .||.|++||++........ ..|..+|..+.+-|.|..+++++. +.|+|||+.+| +.+..+..|..
T Consensus 166 ~hivvtGs-YDg~vrl~DtR~~~~~v~e----lnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~K 239 (487)
T KOG0310|consen 166 DHIVVTGS-YDGKVRLWDTRSLTSRVVE----LNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNK 239 (487)
T ss_pred CeEEEecC-CCceEEEEEeccCCceeEE----ecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccc
Confidence 6 555555 9999999999987544333 368899999999999999999876 46999999965 45555556999
Q ss_pred CeeEEEEcCCCcEEEEeeCCceeeecCCC
Q 014125 356 TVNGFSFHPFLPMAASSSGHRRFPVDDFE 384 (430)
Q Consensus 356 ~v~~~~~~~~~~~l~s~~~d~~~~vw~~~ 384 (430)
.|+|+.+..++..|++++-|+.++|++..
T Consensus 240 tVTcL~l~s~~~rLlS~sLD~~VKVfd~t 268 (487)
T KOG0310|consen 240 TVTCLRLASDSTRLLSGSLDRHVKVFDTT 268 (487)
T ss_pred eEEEEEeecCCceEeecccccceEEEEcc
Confidence 99999999999999999999999999643
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-28 Score=192.79 Aligned_cols=259 Identities=17% Similarity=0.280 Sum_probs=191.2
Q ss_pred CcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCC----ceeeeeec-----c----ccccccc
Q 014125 108 DSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTG----LLRCTYRA-----Y----DAVDEIT 174 (430)
Q Consensus 108 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~-----~----~~~~~~~ 174 (430)
..++......|..++++.+| ++||.++++|+.|-.|++.|++.. +....... | .-.+|..
T Consensus 101 ~~yEt~ylt~HK~~cR~aaf-------s~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~d 173 (430)
T KOG0640|consen 101 SEYETKYLTSHKSPCRAAAF-------SPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVD 173 (430)
T ss_pred cccceEEEeecccceeeeee-------CCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccC
Confidence 35566677788899999999 889999999999999999998721 11100000 0 1123556
Q ss_pred ceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcC
Q 014125 175 AAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED 253 (430)
Q Consensus 175 ~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~ 253 (430)
+|.++.|+|....|++| .|++|++||+...... +.+.. .....+|.++.|+| ++.++++|....++++||++
T Consensus 174 evn~l~FHPre~ILiS~srD~tvKlFDfsK~saK-rA~K~-----~qd~~~vrsiSfHP-sGefllvgTdHp~~rlYdv~ 246 (430)
T KOG0640|consen 174 EVNDLDFHPRETILISGSRDNTVKLFDFSKTSAK-RAFKV-----FQDTEPVRSISFHP-SGEFLLVGTDHPTLRLYDVN 246 (430)
T ss_pred cccceeecchhheEEeccCCCeEEEEecccHHHH-HHHHH-----hhccceeeeEeecC-CCceEEEecCCCceeEEecc
Confidence 99999999999999965 9999999999763211 11111 12345799999999 78899999999999999999
Q ss_pred CceeeEEe---eccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEE
Q 014125 254 NMELLYVL---HGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTG 330 (430)
Q Consensus 254 ~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 330 (430)
+.++...- ..|.+.|+++.+++.++..++++ .||.|++||--+++... .+.. ......|.+..|..+|+|+++.
T Consensus 247 T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaS-kDG~IklwDGVS~rCv~-t~~~-AH~gsevcSa~Ftkn~kyiLsS 323 (430)
T KOG0640|consen 247 TYQCFVSANPDDQHTGAITQVRYSSTGSLYVTAS-KDGAIKLWDGVSNRCVR-TIGN-AHGGSEVCSAVFTKNGKYILSS 323 (430)
T ss_pred ceeEeeecCcccccccceeEEEecCCccEEEEec-cCCcEEeeccccHHHHH-HHHh-hcCCceeeeEEEccCCeEEeec
Confidence 98875543 36889999999999999988888 99999999977664432 2221 2235678999999999999999
Q ss_pred ccCCcEEEEEcCCCCeeccccccc--C---CeeEEEEcCCCcEEEEeeC-CceeeecCC
Q 014125 331 GQDGLVHIYDLQTGKWISGFQAAA--D---TVNGFSFHPFLPMAASSSG-HRRFPVDDF 383 (430)
Q Consensus 331 ~~dg~i~vwd~~~~~~~~~~~~~~--~---~v~~~~~~~~~~~l~s~~~-d~~~~vw~~ 383 (430)
+.|..+++|.+.+++.+..+.+-. + --+...|+....+++.-.. .+.++-||.
T Consensus 324 G~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWda 382 (430)
T KOG0640|consen 324 GKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDA 382 (430)
T ss_pred CCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccc
Confidence 999999999999999988876431 1 1233455555555544332 455666643
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.1e-29 Score=197.73 Aligned_cols=277 Identities=15% Similarity=0.203 Sum_probs=219.3
Q ss_pred eeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccc---cccccceEEEEECCCCcEEEE
Q 014125 114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDA---VDEITAAFSVAFNPTGTKIFA 190 (430)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~ 190 (430)
..++....+.|..| +|||++|++|+.||.|.+|+..+|+....++.... ..+..+|.|+.|+.|...+++
T Consensus 208 IKFg~KSh~EcA~F-------SPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAs 280 (508)
T KOG0275|consen 208 IKFGQKSHVECARF-------SPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLAS 280 (508)
T ss_pred eecccccchhheee-------CCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhc
Confidence 34455556666666 88999999999999999999999987766554321 123458999999999999996
Q ss_pred E-cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeE
Q 014125 191 G-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVT 269 (430)
Q Consensus 191 ~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~ 269 (430)
| .||.|++|.+.++. .+......|...|+|+.|+. ++..+++++.|.++++.-+.+|++++.+++|...|+
T Consensus 281 GsqDGkIKvWri~tG~-------ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn 352 (508)
T KOG0275|consen 281 GSQDGKIKVWRIETGQ-------CLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVN 352 (508)
T ss_pred cCcCCcEEEEEEecch-------HHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCcccccc
Confidence 6 89999999998852 23333357888999999999 556888999999999999999999999999999999
Q ss_pred EEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCC-CEEEEEccCCcEEEEEcCCCCeec
Q 014125 270 HVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSG-RHLGTGGQDGLVHIYDLQTGKWIS 348 (430)
Q Consensus 270 ~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~ 348 (430)
...|.++|..+++++ .||+|++|+..+..... .+...+...+|+++-.-|.. ..++++...++|+|.++. |+.++
T Consensus 353 ~a~ft~dG~~iisaS-sDgtvkvW~~KtteC~~--Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVr 428 (508)
T KOG0275|consen 353 EATFTDDGHHIISAS-SDGTVKVWHGKTTECLS--TFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVR 428 (508)
T ss_pred ceEEcCCCCeEEEec-CCccEEEecCcchhhhh--hccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEe
Confidence 999999999999999 99999999998875542 23345566778888777754 678888899999999987 77777
Q ss_pred cccc---ccCCeeEEEEcCCCcEEEEeeCCceeeecCCCccccccCCCcEEEEeecccccccccCCCCcceeeeeccCcc
Q 014125 349 GFQA---AADTVNGFSFHPFLPMAASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYASMMENADGINGCEFNCQSEHEN 425 (430)
Q Consensus 349 ~~~~---~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (430)
.+.. ..+...+...+|.|.++...+ +|+.++.+.+..+++...+.-|..-. --+..||-
T Consensus 429 sfsSGkREgGdFi~~~lSpkGewiYcig-----------------ED~vlYCF~~~sG~LE~tl~VhEkdv-IGl~HHPH 490 (508)
T KOG0275|consen 429 SFSSGKREGGDFINAILSPKGEWIYCIG-----------------EDGVLYCFSVLSGKLERTLPVHEKDV-IGLTHHPH 490 (508)
T ss_pred eeccCCccCCceEEEEecCCCcEEEEEc-----------------cCcEEEEEEeecCceeeeeecccccc-cccccCcc
Confidence 7753 234566777899999888775 68888889988888887777665533 33355554
Q ss_pred CC
Q 014125 426 LN 427 (430)
Q Consensus 426 ~~ 427 (430)
.|
T Consensus 491 qN 492 (508)
T KOG0275|consen 491 QN 492 (508)
T ss_pred cc
Confidence 43
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=189.87 Aligned_cols=248 Identities=18% Similarity=0.313 Sum_probs=192.7
Q ss_pred ecceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecc
Q 014125 50 YNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFP 129 (430)
Q Consensus 50 ~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 129 (430)
+..+..+..|.++|++++.+ |.++|+||.|-+|+|||+.+.... .....|.+.|+++.|.+
T Consensus 33 l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~ql-----------------g~ll~HagsitaL~F~~ 93 (362)
T KOG0294|consen 33 LKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQL-----------------GILLSHAGSITALKFYP 93 (362)
T ss_pred eeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhh-----------------cceeccccceEEEEecC
Confidence 34567889999999999996 699999999999999999875432 24455678999999966
Q ss_pred ccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCcc
Q 014125 130 HMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDF 208 (430)
Q Consensus 130 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~ 208 (430)
.. ..+.|++|+.||.|.+|+...-..+..++.|.. .|+.++.+|.+++.+ +|.|+.++.||+-++...+
T Consensus 94 ~~-----S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~-----~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~ 163 (362)
T KOG0294|consen 94 PL-----SKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKG-----QVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAF 163 (362)
T ss_pred Cc-----chhheeeecCCCcEEEEEcCCeEEeeeeccccc-----ccceeEecCCCceEEEEcCCceeeeehhhcCccce
Confidence 42 223899999999999999999999999998887 899999999999877 7899999999997754322
Q ss_pred cccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCC
Q 014125 209 EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDP 288 (430)
Q Consensus 209 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~ 288 (430)
... + ....+.+.|+|.+ ..++.+.. ..|-+|.+.+......+. ....+.++.|. ++..|++|+ .|+
T Consensus 164 v~~--L-------~~~at~v~w~~~G-d~F~v~~~-~~i~i~q~d~A~v~~~i~-~~~r~l~~~~l-~~~~L~vG~-d~~ 229 (362)
T KOG0294|consen 164 VLN--L-------KNKATLVSWSPQG-DHFVVSGR-NKIDIYQLDNASVFREIE-NPKRILCATFL-DGSELLVGG-DNE 229 (362)
T ss_pred eec--c-------CCcceeeEEcCCC-CEEEEEec-cEEEEEecccHhHhhhhh-ccccceeeeec-CCceEEEec-CCc
Confidence 111 1 1123449999954 45555543 568899888776655554 23457777775 566788898 899
Q ss_pred eEEEEeCCCCceEEEEeecccCCccceEEEEE--cCCCCEEEEEccCCcEEEEEcCCC
Q 014125 289 YILCWDLRKAVQVVYKLYRSSEHTNQRILFDI--EPSGRHLGTGGQDGLVHIYDLQTG 344 (430)
Q Consensus 289 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~dg~i~vwd~~~~ 344 (430)
.|++||....... ....+|.+.|..+.+ .|++.+|++++.||.|+|||++..
T Consensus 230 ~i~~~D~ds~~~~----~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 230 WISLKDTDSDTPL----TEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eEEEeccCCCccc----eeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 9999999875332 333689999988874 567889999999999999999865
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-27 Score=211.59 Aligned_cols=323 Identities=18% Similarity=0.167 Sum_probs=246.0
Q ss_pred cccccCCCCCcceeeecceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCccccee
Q 014125 35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL 114 (430)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (430)
+...|++...+ .+.++.++.+.|+++.=+|--..+|.|..+|+|.|+++..++.. .
T Consensus 183 ~lql~Nvrt~K------~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil------------------~ 238 (910)
T KOG1539|consen 183 RLQLWNVRTGK------VVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKIL------------------M 238 (910)
T ss_pred cEEEEEeccCc------EEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEE------------------E
Confidence 44445544444 44578889999999999998899999999999999999876543 3
Q ss_pred eecC-CCeeeeeeeccccCccCCCCc-eEEEEeCCCcEEEEeccCCceeeeee-cccccccccceEEEEECCCCcEEE-E
Q 014125 115 VVTE-GESVYDFCWFPHMSASDPTSC-VFASTTRDHPIHLWDATTGLLRCTYR-AYDAVDEITAAFSVAFNPTGTKIF-A 190 (430)
Q Consensus 115 ~~~~-~~~v~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~-~ 190 (430)
.+.+ .+.|+.++| ..||+ .+++|+..|.+.+||++..+.+.... .|.. .|....|-|....++ +
T Consensus 239 sFk~d~g~VtslSF-------rtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~-----sv~~~~fl~~epVl~ta 306 (910)
T KOG1539|consen 239 SFKQDWGRVTSLSF-------RTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYG-----SVTGATFLPGEPVLVTA 306 (910)
T ss_pred EEEccccceeEEEe-------ccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccC-----CcccceecCCCceEeec
Confidence 3334 379999999 55664 57777788999999999887766655 3322 566666666666666 3
Q ss_pred EcCCeEEEEEcCCCCCccc-------------------------------------------------c-----------
Q 014125 191 GYNKSVRVFDVHRPGRDFE-------------------------------------------------K----------- 210 (430)
Q Consensus 191 ~~d~~i~v~d~~~~~~~~~-------------------------------------------------~----------- 210 (430)
+.|+.+++|-.++++...+ .
T Consensus 307 ~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~ 386 (910)
T KOG1539|consen 307 GADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVN 386 (910)
T ss_pred cCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccccccccccc
Confidence 4666666654432111000 0
Q ss_pred -c-------------------------------------------ccc------cCCCCCCCcceEEEEEcCCCCceEEE
Q 014125 211 -Y-------------------------------------------STL------KGNKEGQAGIMSAIAFSPTHTGMLAI 240 (430)
Q Consensus 211 -~-------------------------------------------~~~------~~~~~~~~~~v~~~~~~~~~~~~l~~ 240 (430)
. ... ...+......+++++.++ .+++.+.
T Consensus 387 ~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~I 465 (910)
T KOG1539|consen 387 VFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVFI 465 (910)
T ss_pred ccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec-cCceEEE
Confidence 0 000 000111235688899999 7889999
Q ss_pred ecCCCeEEEEEcCCceeeEEe---eccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEE
Q 014125 241 GSYSQTSAIYREDNMELLYVL---HGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRIL 317 (430)
Q Consensus 241 ~~~dg~v~~~d~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~ 317 (430)
|...|.|-+|++.+|-....+ ..|.++|++++...-++.+++++ .+|.+.+||..... .... ..-...+..
T Consensus 466 G~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~-~~Gilkfw~f~~k~-l~~~----l~l~~~~~~ 539 (910)
T KOG1539|consen 466 GYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAG-ADGILKFWDFKKKV-LKKS----LRLGSSITG 539 (910)
T ss_pred eccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEcc-CcceEEEEecCCcc-eeee----eccCCCcce
Confidence 999999999999999888777 58999999999998899999999 99999999998764 2222 234556777
Q ss_pred EEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCCCc------------
Q 014125 318 FDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFED------------ 385 (430)
Q Consensus 318 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~------------ 385 (430)
+..+.....++.+..|-.|+++|..+.+.++.|.+|.+.|++++|+|+|++|++++.|+.|++||...
T Consensus 540 iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~ 619 (910)
T KOG1539|consen 540 IVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSP 619 (910)
T ss_pred eeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCc
Confidence 88888888999999999999999999999999999999999999999999999999999999997654
Q ss_pred ------------cccccCC-CcEEEEee
Q 014125 386 ------------LHLSGDE-NCVSVWSF 400 (430)
Q Consensus 386 ------------l~~~~~d-~~i~~w~~ 400 (430)
|+|+..| ..|++|.-
T Consensus 620 ~~sls~SPngD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 620 CTSLSFSPNGDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred ceeeEECCCCCEEEEEEecCceEEEEEc
Confidence 6676666 78999954
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-27 Score=188.40 Aligned_cols=274 Identities=15% Similarity=0.167 Sum_probs=205.9
Q ss_pred eEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEE
Q 014125 74 SFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLW 153 (430)
Q Consensus 74 ~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vw 153 (430)
.|+.|++...|.-+++.-.. ....... ...-........|..++++++. ++.++|+|+.|-+|+||
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~-~~~~~s~----~~~l~~lF~~~aH~~sitavAV---------s~~~~aSGssDetI~IY 68 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEP-KGCTDSV----KPTLKPLFAFSAHAGSITALAV---------SGPYVASGSSDETIHIY 68 (362)
T ss_pred eEEEeeeeeEEEEEEeccCc-ccccccc----ceeeeccccccccccceeEEEe---------cceeEeccCCCCcEEEE
Confidence 36678887777666665322 0000000 0001112234457789999988 68899999999999999
Q ss_pred eccCCceeeeeecccccccccceEEEEECCCC---cEEEEEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEE
Q 014125 154 DATTGLLRCTYRAYDAVDEITAAFSVAFNPTG---TKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAF 230 (430)
Q Consensus 154 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 230 (430)
|+.+......+-.|.. .|+++.|.+.- .+|.++.||.|.+|+... -.+...+.+|.+.|+.++.
T Consensus 69 Dm~k~~qlg~ll~Hag-----sitaL~F~~~~S~shLlS~sdDG~i~iw~~~~--------W~~~~slK~H~~~Vt~lsi 135 (362)
T KOG0294|consen 69 DMRKRKQLGILLSHAG-----SITALKFYPPLSKSHLLSGSDDGHIIIWRVGS--------WELLKSLKAHKGQVTDLSI 135 (362)
T ss_pred eccchhhhcceecccc-----ceEEEEecCCcchhheeeecCCCcEEEEEcCC--------eEEeeeecccccccceeEe
Confidence 9999888877777665 99999999887 344466999999999865 3444556788889999999
Q ss_pred cCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccC
Q 014125 231 SPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSE 310 (430)
Q Consensus 231 ~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 310 (430)
+| .+.+.++.+.|+.+++||+-.++.-..+. -....+.+.|+|.|.+++.++ ...|-+|.+.+.... ....
T Consensus 136 HP-S~KLALsVg~D~~lr~WNLV~Gr~a~v~~-L~~~at~v~w~~~Gd~F~v~~--~~~i~i~q~d~A~v~-----~~i~ 206 (362)
T KOG0294|consen 136 HP-SGKLALSVGGDQVLRTWNLVRGRVAFVLN-LKNKATLVSWSPQGDHFVVSG--RNKIDIYQLDNASVF-----REIE 206 (362)
T ss_pred cC-CCceEEEEcCCceeeeehhhcCccceeec-cCCcceeeEEcCCCCEEEEEe--ccEEEEEecccHhHh-----hhhh
Confidence 99 88899999999999999998887665554 223345599999999998887 567999998875321 1112
Q ss_pred CccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEE--cCCCcEEEEeeCCceeeecCCC
Q 014125 311 HTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSF--HPFLPMAASSSGHRRFPVDDFE 384 (430)
Q Consensus 311 ~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~s~~~d~~~~vw~~~ 384 (430)
....+.++.|- ++..|++|++|+.|.+||.++..+...+.+|...|.++.+ .|++.+|+|++.||.|+|||.+
T Consensus 207 ~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~ 281 (362)
T KOG0294|consen 207 NPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDID 281 (362)
T ss_pred ccccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcc
Confidence 23446666665 4678999999999999999999999999999999999985 4678899999987777777543
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=210.01 Aligned_cols=179 Identities=20% Similarity=0.339 Sum_probs=147.2
Q ss_pred CcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEcc---CCCEEEEEecCCCeEEEEeCCCC
Q 014125 222 AGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSR---DGNYLYTGGRKDPYILCWDLRKA 298 (430)
Q Consensus 222 ~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~~d~~i~i~d~~~~ 298 (430)
...+++++.+| ++..||+|..-|++++|++..-+....+.+|+..|.|+.|+. ..++|++++ .|..|.+||+...
T Consensus 459 r~G~R~~~vSp-~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASas-rdRlIHV~Dv~rn 536 (1080)
T KOG1408|consen 459 RFGFRALAVSP-DGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASAS-RDRLIHVYDVKRN 536 (1080)
T ss_pred ccceEEEEECC-CcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhcc-CCceEEEEecccc
Confidence 45699999999 777999999999999999999888888999999999999985 245777787 9999999998542
Q ss_pred ceEEEEe-------------------------------------------ec---ccCCccceEEEEEcCCCCEEEEEcc
Q 014125 299 VQVVYKL-------------------------------------------YR---SSEHTNQRILFDIEPSGRHLGTGGQ 332 (430)
Q Consensus 299 ~~~~~~~-------------------------------------------~~---~~~~~~~v~~~~~~~~~~~l~~~~~ 332 (430)
..+...+ +. .......++.++..|..+++++++.
T Consensus 537 y~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQ 616 (1080)
T KOG1408|consen 537 YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQ 616 (1080)
T ss_pred cchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEec
Confidence 2111000 00 0011345777888899999999999
Q ss_pred CCcEEEEEcCCCCeeccccc---ccCCeeEEEEcCCCcEEEEeeCCceeeecCC-------------------------C
Q 014125 333 DGLVHIYDLQTGKWISGFQA---AADTVNGFSFHPFLPMAASSSGHRRFPVDDF-------------------------E 384 (430)
Q Consensus 333 dg~i~vwd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~-------------------------~ 384 (430)
|..|+|||+.+++..+.|++ |.+....+...|.|.||++++.|+++.++|. .
T Consensus 617 Drnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCk 696 (1080)
T KOG1408|consen 617 DRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCK 696 (1080)
T ss_pred ccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccch
Confidence 99999999999999999975 6677889999999999999999999999843 3
Q ss_pred ccccccCCCcEEEEeecc
Q 014125 385 DLHLSGDENCVSVWSFLY 402 (430)
Q Consensus 385 ~l~~~~~d~~i~~w~~~~ 402 (430)
.|++.+.||+|.+|.+..
T Consensus 697 HlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 697 HLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred hheeecCCceEEEEECch
Confidence 389999999999999864
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-28 Score=186.83 Aligned_cols=260 Identities=18% Similarity=0.246 Sum_probs=201.8
Q ss_pred eecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCc
Q 014125 54 RTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (430)
Q Consensus 54 ~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (430)
++-..|++.|..+...-.|+.||||+.|++|+|+....+.. ........+|.++|+.++|..
T Consensus 5 ~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~--------------s~ll~~L~Gh~GPVwqv~wah---- 66 (299)
T KOG1332|consen 5 TIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ--------------SKLLAELTGHSGPVWKVAWAH---- 66 (299)
T ss_pred ehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC--------------ceeeeEecCCCCCeeEEeecc----
Confidence 35678999999999999999999999999999999986532 123334567889999999943
Q ss_pred cCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCC--cEEEE-EcCCeEEEEEcCCCCCcccc
Q 014125 134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG--TKIFA-GYNKSVRVFDVHRPGRDFEK 210 (430)
Q Consensus 134 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~-~~d~~i~v~d~~~~~~~~~~ 210 (430)
-.-|.+||+++.||.|.||.-+.++..+. +....|...|++++|.|.+ ..|++ +.||.|.|.+.+..+.
T Consensus 67 -Pk~G~iLAScsYDgkVIiWke~~g~w~k~---~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~---- 138 (299)
T KOG1332|consen 67 -PKFGTILASCSYDGKVIIWKEENGRWTKA---YEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGG---- 138 (299)
T ss_pred -cccCcEeeEeecCceEEEEecCCCchhhh---hhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCC----
Confidence 23688999999999999999988854332 2223344589999999975 45554 4999999999987522
Q ss_pred cccccCCCCCCCcceEEEEEcCCC--C-----------ceEEEecCCCeEEEEEcCCce--eeEEeeccccCeEEEEEcc
Q 014125 211 YSTLKGNKEGQAGIMSAIAFSPTH--T-----------GMLAIGSYSQTSAIYREDNME--LLYVLHGQEGGVTHVQFSR 275 (430)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~~~~~--~-----------~~l~~~~~dg~v~~~d~~~~~--~~~~~~~~~~~i~~~~~~~ 275 (430)
.........|...|++++|.|.. + ..|++|+.|..|+||+..+++ ....+.+|.+.|+.++|.|
T Consensus 139 -w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP 217 (299)
T KOG1332|consen 139 -WTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAP 217 (299)
T ss_pred -ccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhcc
Confidence 22333446788889999999841 1 469999999999999988753 4455889999999999999
Q ss_pred CC----CEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcC
Q 014125 276 DG----NYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQ 342 (430)
Q Consensus 276 ~~----~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 342 (430)
.- .+|++++ .||++.||..+........ .........++.+.||+.|..|+.++.|+.|.+|.-+
T Consensus 218 ~~gl~~s~iAS~S-qDg~viIwt~~~e~e~wk~-tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 218 SVGLPKSTIASCS-QDGTVIIWTKDEEYEPWKK-TLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred ccCCCceeeEEec-CCCcEEEEEecCccCcccc-cccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 64 4788888 9999999988744222211 1123466789999999999999999999999999865
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8e-29 Score=200.34 Aligned_cols=265 Identities=14% Similarity=0.190 Sum_probs=212.0
Q ss_pred ecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCe
Q 014125 116 VTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKS 195 (430)
Q Consensus 116 ~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~ 195 (430)
.+|...|.+++=+|..+ ..+++|+.||.|++||+.+..+...++.|.+ .|..+++.. +.++.+|.|++
T Consensus 63 ~gHrdGV~~lakhp~~l------s~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G-----~V~Gi~v~~-~~~~tvgdDKt 130 (433)
T KOG0268|consen 63 DGHRDGVSCLAKHPNKL------STVASGSCDGEVKIWNLSQRECIRTFKAHEG-----LVRGICVTQ-TSFFTVGDDKT 130 (433)
T ss_pred cccccccchhhcCcchh------hhhhccccCceEEEEehhhhhhhheeecccC-----ceeeEEecc-cceEEecCCcc
Confidence 45678899998866422 5799999999999999999999999998887 889999986 66777999999
Q ss_pred EEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEcc
Q 014125 196 VRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSR 275 (430)
Q Consensus 196 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~ 275 (430)
|+.|.+..+ +.. .+ ...+.+..+.-+. ....+++++ ..|.|||..-..++..+.--...|.++.|+|
T Consensus 131 vK~wk~~~~--p~~---ti-----lg~s~~~gIdh~~-~~~~FaTcG--e~i~IWD~~R~~Pv~smswG~Dti~svkfNp 197 (433)
T KOG0268|consen 131 VKQWKIDGP--PLH---TI-----LGKSVYLGIDHHR-KNSVFATCG--EQIDIWDEQRDNPVSSMSWGADSISSVKFNP 197 (433)
T ss_pred eeeeeccCC--cce---ee-----ecccccccccccc-ccccccccC--ceeeecccccCCccceeecCCCceeEEecCC
Confidence 999998763 111 11 1123345555554 556777776 4699999998899999987778899999999
Q ss_pred CCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCC-Ceeccccccc
Q 014125 276 DGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTG-KWISGFQAAA 354 (430)
Q Consensus 276 ~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~ 354 (430)
....|+.++..|+.|.+||+++......... ...-+.++|+|.+-.+++|++|..++.||++.. +++....+|.
T Consensus 198 vETsILas~~sDrsIvLyD~R~~~Pl~KVi~-----~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhv 272 (433)
T KOG0268|consen 198 VETSILASCASDRSIVLYDLRQASPLKKVIL-----TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHV 272 (433)
T ss_pred CcchheeeeccCCceEEEecccCCccceeee-----eccccceecCccccceeeccccccceehhhhhhcccchhhcccc
Confidence 8776665555999999999999865544332 233456999998878999999999999999864 5688889999
Q ss_pred CCeeEEEEcCCCcEEEEeeCCceeeecCC--------------------------CccccccCCCcEEEEeecccccccc
Q 014125 355 DTVNGFSFHPFLPMAASSSGHRRFPVDDF--------------------------EDLHLSGDENCVSVWSFLYASMMEN 408 (430)
Q Consensus 355 ~~v~~~~~~~~~~~l~s~~~d~~~~vw~~--------------------------~~l~~~~~d~~i~~w~~~~~~~~~~ 408 (430)
+.|.++.|+|.|+-+++||.|..|+|+.. ..++++++|+.||+|.-...+.+..
T Consensus 273 sAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklgv 352 (433)
T KOG0268|consen 273 SAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLGV 352 (433)
T ss_pred eeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhcCC
Confidence 99999999999999999999999999833 2388999999999998877666655
Q ss_pred cC
Q 014125 409 AD 410 (430)
Q Consensus 409 ~~ 410 (430)
+.
T Consensus 353 ~t 354 (433)
T KOG0268|consen 353 IT 354 (433)
T ss_pred CC
Confidence 54
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.4e-28 Score=203.70 Aligned_cols=285 Identities=14% Similarity=0.192 Sum_probs=226.0
Q ss_pred ccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCC
Q 014125 57 SIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP 136 (430)
Q Consensus 57 ~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 136 (430)
..|..-|.++..|...+.+.||+. |.|+|||+........... .-....+.-|+++.. .|
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~Pvsq------------Ldcl~rdnyiRSckL-------~p 475 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQ------------LDCLNRDNYIRSCKL-------LP 475 (705)
T ss_pred hccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCcccc------------ccccCcccceeeeEe-------cC
Confidence 478888999999999999999987 5799999975422111110 001122345666666 77
Q ss_pred CCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCccccccccc
Q 014125 137 TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLK 215 (430)
Q Consensus 137 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~ 215 (430)
||+.|++|+.-.++.|||+.............. ....++++.+||.+..+ +..||.|.|||+.. ..+.
T Consensus 476 dgrtLivGGeastlsiWDLAapTprikaeltss---apaCyALa~spDakvcFsccsdGnI~vwDLhn--------q~~V 544 (705)
T KOG0639|consen 476 DGRTLIVGGEASTLSIWDLAAPTPRIKAELTSS---APACYALAISPDAKVCFSCCSDGNIAVWDLHN--------QTLV 544 (705)
T ss_pred CCceEEeccccceeeeeeccCCCcchhhhcCCc---chhhhhhhcCCccceeeeeccCCcEEEEEccc--------ceee
Confidence 999999999999999999987644332222211 11677899999999888 55999999999987 4555
Q ss_pred CCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeC
Q 014125 216 GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDL 295 (430)
Q Consensus 216 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~ 295 (430)
..+.+|...+.|+.+++ ++..|.+|+-|.+|+.||+++++.+.... ....|.++..+|.+.++++|- ..+.+.+...
T Consensus 545 rqfqGhtDGascIdis~-dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGM-ens~vevlh~ 621 (705)
T KOG0639|consen 545 RQFQGHTDGASCIDISK-DGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGM-ENSNVEVLHT 621 (705)
T ss_pred ecccCCCCCceeEEecC-CCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeec-ccCcEEEEec
Confidence 56789999999999999 66789999999999999999988765544 457899999999999999998 8999988877
Q ss_pred CCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCC
Q 014125 296 RKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGH 375 (430)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 375 (430)
....+. .+ ..|.+.|.++.|.+.|+++++.+.|+.+..|.+.-|..+...+ ..++|.++..+.+.++++||+.|
T Consensus 622 skp~ky--ql---hlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGd 695 (705)
T KOG0639|consen 622 SKPEKY--QL---HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGD 695 (705)
T ss_pred CCccce--ee---cccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCC
Confidence 665332 22 5688999999999999999999999999999999898887776 45689999999999999999987
Q ss_pred ceeeec
Q 014125 376 RRFPVD 381 (430)
Q Consensus 376 ~~~~vw 381 (430)
..-.||
T Consensus 696 kkATVY 701 (705)
T KOG0639|consen 696 KKATVY 701 (705)
T ss_pred cceEEE
Confidence 655444
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-27 Score=188.94 Aligned_cols=281 Identities=15% Similarity=0.251 Sum_probs=211.8
Q ss_pred eeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEE
Q 014125 63 LKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFA 142 (430)
Q Consensus 63 v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 142 (430)
-.|+.|++.|.+||+|+.||.|.|||+.+.... .....|-.+|.+++| |++|+.|+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~ia-----------------r~lsaH~~pi~sl~W-------S~dgr~Ll 81 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIA-----------------RMLSAHVRPITSLCW-------SRDGRKLL 81 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchh-----------------hhhhccccceeEEEe-------cCCCCEee
Confidence 789999999999999999999999999876432 244456689999999 88999999
Q ss_pred EEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE--EEcCCeEEEEEcCCCCCcccccccccCCCCC
Q 014125 143 STTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF--AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEG 220 (430)
Q Consensus 143 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~ 220 (430)
+++.|..|.+||+..|.+...+.... +|+...|+|.....+ +-.+..-.+-++..+... .+.....+
T Consensus 82 tsS~D~si~lwDl~~gs~l~rirf~s------pv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~-----~Lp~d~d~ 150 (405)
T KOG1273|consen 82 TSSRDWSIKLWDLLKGSPLKRIRFDS------PVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS-----VLPKDDDG 150 (405)
T ss_pred eecCCceeEEEeccCCCceeEEEccC------ccceeeeccccCCeEEEEEecCCcEEEEecCCcee-----eccCCCcc
Confidence 99999999999999999988887765 899999999764433 335555555555432111 11111111
Q ss_pred C-CcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccc-cCeEEEEEccCCCEEEEEecCCCeEEEEeCCCC
Q 014125 221 Q-AGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE-GGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKA 298 (430)
Q Consensus 221 ~-~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~ 298 (430)
. .....+..|.+ .++++++|...|.+.+||..+.+++..++-.. ..|..+.++..|++|+.-+ .|..||.|+++.-
T Consensus 151 dln~sas~~~fdr-~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNt-sDRvIR~ye~~di 228 (405)
T KOG1273|consen 151 DLNSSASHGVFDR-RGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINT-SDRVIRTYEISDI 228 (405)
T ss_pred ccccccccccccC-CCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEec-CCceEEEEehhhh
Confidence 1 11223346777 78899999999999999999999988887555 6899999999999999999 9999999998732
Q ss_pred ceE-----EEEeec--ccCCccceEEEEEcCCCCEEEEEccC-CcEEEEEcCCCCeeccccccc-CCeeEEEEcCCCcEE
Q 014125 299 VQV-----VYKLYR--SSEHTNQRILFDIEPSGRHLGTGGQD-GLVHIYDLQTGKWISGFQAAA-DTVNGFSFHPFLPMA 369 (430)
Q Consensus 299 ~~~-----~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l 369 (430)
... ...... ..-....-.+++|+.+|.|++.|+.. ..++||.-..|.+++.+.|.. .....+.|+|-...+
T Consensus 229 ~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i 308 (405)
T KOG1273|consen 229 DDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPII 308 (405)
T ss_pred cccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeee
Confidence 111 000000 01122344578999999999888753 459999999999999999887 468899999999888
Q ss_pred EEeeCCceeeec
Q 014125 370 ASSSGHRRFPVD 381 (430)
Q Consensus 370 ~s~~~d~~~~vw 381 (430)
++- ..|.+++|
T Consensus 309 ~si-~sg~v~iw 319 (405)
T KOG1273|consen 309 ASI-ASGVVYIW 319 (405)
T ss_pred eec-cCCceEEE
Confidence 887 44455555
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.4e-28 Score=216.83 Aligned_cols=266 Identities=17% Similarity=0.247 Sum_probs=190.5
Q ss_pred cCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccc-----cccccceEEEEECC---CCcEE
Q 014125 117 TEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDA-----VDEITAAFSVAFNP---TGTKI 188 (430)
Q Consensus 117 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~---~~~~l 188 (430)
.|.+.|+++.| |+||++||+|+.||.|+||.+...+....-..... ......+..+.-++ .++..
T Consensus 265 ah~gaIw~mKF-------S~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s 337 (712)
T KOG0283|consen 265 AHKGAIWAMKF-------SHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS 337 (712)
T ss_pred ccCCcEEEEEe-------CCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence 68889999999 88999999999999999999876433111000000 00000000011111 01111
Q ss_pred E--EE-cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccc
Q 014125 189 F--AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE 265 (430)
Q Consensus 189 ~--~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~ 265 (430)
. .+ .... .+.... .+.....+...+.+|.+.|..+.|+. .++|++++.|.+|++|++...+++..|. |.
T Consensus 338 ~~~~~~~s~~-~~~p~~----~f~f~ekP~~ef~GHt~DILDlSWSK--n~fLLSSSMDKTVRLWh~~~~~CL~~F~-Hn 409 (712)
T KOG0283|consen 338 SSRKGSQSPC-VLLPLK----AFVFSEKPFCEFKGHTADILDLSWSK--NNFLLSSSMDKTVRLWHPGRKECLKVFS-HN 409 (712)
T ss_pred ccccccCCcc-ccCCCc----cccccccchhhhhccchhheeccccc--CCeeEeccccccEEeecCCCcceeeEEe-cC
Confidence 1 11 1111 111111 11122334445689999999999996 4599999999999999999999999998 99
Q ss_pred cCeEEEEEcc-CCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCC
Q 014125 266 GGVTHVQFSR-DGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTG 344 (430)
Q Consensus 266 ~~i~~~~~~~-~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 344 (430)
..|+|++|+| |.+|+++|+ -||.||||++...+ +. .. ..-..-|++++|.|+|++.+.|+.+|..++|++...
T Consensus 410 dfVTcVaFnPvDDryFiSGS-LD~KvRiWsI~d~~-Vv-~W---~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~l 483 (712)
T KOG0283|consen 410 DFVTCVAFNPVDDRYFISGS-LDGKVRLWSISDKK-VV-DW---NDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGL 483 (712)
T ss_pred CeeEEEEecccCCCcEeecc-cccceEEeecCcCe-eE-ee---hhhhhhheeEEeccCCceEEEEEeccEEEEEEccCC
Confidence 9999999999 678999999 99999999998763 22 11 234578999999999999999999999999999987
Q ss_pred Ceeccccc---------ccCCeeEEEEcCCCc-EEEEeeCCceeeecCCCc---------------------------cc
Q 014125 345 KWISGFQA---------AADTVNGFSFHPFLP-MAASSSGHRRFPVDDFED---------------------------LH 387 (430)
Q Consensus 345 ~~~~~~~~---------~~~~v~~~~~~~~~~-~l~s~~~d~~~~vw~~~~---------------------------l~ 387 (430)
+....+.- |. .|+++.|.|... .++..+.|.+|+|+|... ++
T Consensus 484 k~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IV 562 (712)
T KOG0283|consen 484 KLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIV 562 (712)
T ss_pred eEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEE
Confidence 76554431 22 799999998655 577778899999997732 88
Q ss_pred cccCCCcEEEEeecccc
Q 014125 388 LSGDENCVSVWSFLYAS 404 (430)
Q Consensus 388 ~~~~d~~i~~w~~~~~~ 404 (430)
++++|..|++|++....
T Consensus 563 s~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 563 SASEDSWVYIWKNDSFN 579 (712)
T ss_pred EeecCceEEEEeCCCCc
Confidence 99999999999985433
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-27 Score=194.56 Aligned_cols=251 Identities=19% Similarity=0.264 Sum_probs=207.0
Q ss_pred ceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecccc
Q 014125 52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (430)
Q Consensus 52 ~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (430)
.+.++.||...|+.+.|+|+...+++++.|..|+||...... .......|..+|+.+.-
T Consensus 253 ~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s-----------------~~~~~~~h~~~V~~ls~---- 311 (506)
T KOG0289|consen 253 ILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS-----------------EPTSSRPHEEPVTGLSL---- 311 (506)
T ss_pred hhhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc-----------------Cccccccccccceeeee----
Confidence 456899999999999999999999999999999999987542 33345567789999988
Q ss_pred CccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccc
Q 014125 132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEK 210 (430)
Q Consensus 132 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~ 210 (430)
+|.|.+|++++.||+..+.|+.++..+....... ....+++.+|+|||.++.+| .|+.|+|||+..+.
T Consensus 312 ---h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~---s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~----- 380 (506)
T KOG0289|consen 312 ---HPTGEYLLSASNDGTWAFSDISSGSQLTVVSDET---SDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQT----- 380 (506)
T ss_pred ---ccCCcEEEEecCCceEEEEEccCCcEEEEEeecc---ccceeEEeeEcCCceEEeccCCCceEEEEEcCCcc-----
Confidence 6689999999999999999999998877665431 11268899999999999876 89999999998742
Q ss_pred cccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccc-cCeEEEEEccCCCEEEEEecCCCe
Q 014125 211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE-GGVTHVQFSRDGNYLYTGGRKDPY 289 (430)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~~d~~ 289 (430)
....+.+|.++|..++|+. ++.+|++++.|+.|++||+|.-+...++...+ .++.++.|.+.|.+|+.++ .|=+
T Consensus 381 ---~~a~Fpght~~vk~i~FsE-NGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g-~~l~ 455 (506)
T KOG0289|consen 381 ---NVAKFPGHTGPVKAISFSE-NGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAG-SDLQ 455 (506)
T ss_pred ---ccccCCCCCCceeEEEecc-CceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeec-ceeE
Confidence 3344578999999999999 88899999999999999999888776665332 3799999999999999998 7777
Q ss_pred EEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEc
Q 014125 290 ILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDL 341 (430)
Q Consensus 290 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 341 (430)
|++++-.+. ....+.....|.+..+.+.|....+++++++.|..++++.+
T Consensus 456 Vy~~~k~~k--~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 456 VYICKKKTK--SWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred EEEEecccc--cceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 777764432 23344444667788899999999999999999999888764
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-27 Score=214.55 Aligned_cols=248 Identities=19% Similarity=0.296 Sum_probs=206.5
Q ss_pred ecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCcc
Q 014125 55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS 134 (430)
Q Consensus 55 ~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 134 (430)
.+.||.+.|.++++..-+.+|++|+.|.++++||..++.+.. ...+|.+.|.++..
T Consensus 244 ~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~-----------------~l~gh~stv~~~~~------- 299 (537)
T KOG0274|consen 244 RLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTH-----------------SLQGHTSSVRCLTI------- 299 (537)
T ss_pred eccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEE-----------------EecCCCceEEEEEc-------
Confidence 389999999999998878899999999999999998876532 33456688998876
Q ss_pred CCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCccccccc
Q 014125 135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYST 213 (430)
Q Consensus 135 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~ 213 (430)
...++++|+.|.+|++|+++++..+..+.+|.. +|.++..+ +.+++ ++.|++|++||+.+ ..
T Consensus 300 --~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~-----~V~~v~~~--~~~lvsgs~d~~v~VW~~~~--------~~ 362 (537)
T KOG0274|consen 300 --DPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTG-----PVNCVQLD--EPLLVSGSYDGTVKVWDPRT--------GK 362 (537)
T ss_pred --cCceEeeccCCceEEEEeccCcceEEEeccccc-----cEEEEEec--CCEEEEEecCceEEEEEhhh--------ce
Confidence 455888899999999999999999999887655 99999997 55666 55999999999985 34
Q ss_pred ccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCc-eeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEE
Q 014125 214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-ELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILC 292 (430)
Q Consensus 214 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i 292 (430)
+...+.+|...|.++.+.+ . ..+++|+.|++|++||+++. +++..+.+|..-+..+.+ .+++|++++ .|++|++
T Consensus 363 cl~sl~gH~~~V~sl~~~~-~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~-aD~~Ik~ 437 (537)
T KOG0274|consen 363 CLKSLSGHTGRVYSLIVDS-E-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSS-ADGTIKL 437 (537)
T ss_pred eeeeecCCcceEEEEEecC-c-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEecc-ccccEEE
Confidence 5555688999999998866 2 79999999999999999999 999999999988877665 677888888 9999999
Q ss_pred EeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccc
Q 014125 293 WDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAA 353 (430)
Q Consensus 293 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 353 (430)
||..++.... .+.. .+...+..+++. ...+++++.||.+++||++++++...+-.+
T Consensus 438 WD~~~~~~~~-~~~~--~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l~~~ 493 (537)
T KOG0274|consen 438 WDAEEGECLR-TLEG--RHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTLLST 493 (537)
T ss_pred eecccCceee-eecc--CCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhhhhc
Confidence 9999886543 3221 166778888775 467899999999999999999998877433
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-27 Score=218.45 Aligned_cols=271 Identities=18% Similarity=0.260 Sum_probs=206.5
Q ss_pred cceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCccccccc--ccccccCcccceeeecCCCeeeeeeec
Q 014125 51 NQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNAC--SLAKDQDSYEASLVVTEGESVYDFCWF 128 (430)
Q Consensus 51 ~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~ 128 (430)
+.+.....|.+.|+|+.|+|||++||+||+|+.|.||..... ........ ................|...|.+++|
T Consensus 60 k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~-~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~W- 137 (942)
T KOG0973|consen 60 KHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEI-GSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNW- 137 (942)
T ss_pred hhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeeccc-CCcccccccccccccceeeEEEEEecCCCccceecc-
Confidence 445577899999999999999999999999999999998741 11111100 01111223344566779999999999
Q ss_pred cccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCCc
Q 014125 129 PHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRD 207 (430)
Q Consensus 129 ~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~~ 207 (430)
+|++.+|++++.|++|.+|+..+.+.+..+..|.. .|..+.|.|-|+++++ +.|++|++|++..-+.
T Consensus 138 ------sp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s-----~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i- 205 (942)
T KOG0973|consen 138 ------SPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQS-----LVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGI- 205 (942)
T ss_pred ------CCCccEEEEecccceEEEEccccceeeeeeecccc-----cccceEECCccCeeeeecCCceEEEEEccccee-
Confidence 77899999999999999999999999999998877 8999999999999995 6999999999654111
Q ss_pred ccccccccCCC--CCCCcceEEEEEcCCCCceEEEecC----CCeEEEEEcCCceeeEEeeccccCeEEEEEccC-----
Q 014125 208 FEKYSTLKGNK--EGQAGIMSAIAFSPTHTGMLAIGSY----SQTSAIYREDNMELLYVLHGQEGGVTHVQFSRD----- 276 (430)
Q Consensus 208 ~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~----dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~----- 276 (430)
...+...+ ..-...+..+.|+| ++.+|++... -.++.|.+..+.+.-..+-+|.+++.+++|+|.
T Consensus 206 ---~k~It~pf~~~~~~T~f~RlSWSP-DG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~ 281 (942)
T KOG0973|consen 206 ---EKSITKPFEESPLTTFFLRLSWSP-DGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERN 281 (942)
T ss_pred ---eEeeccchhhCCCcceeeecccCC-CcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccc
Confidence 11111111 12234688999999 5557766532 346888988888888899999999999999982
Q ss_pred CC------------EEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCC
Q 014125 277 GN------------YLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQT 343 (430)
Q Consensus 277 ~~------------~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 343 (430)
.+ .+++|+ .|++|.||.....++.. ... .-....|..++|+|||..|+++|.||+|.+..+..
T Consensus 282 ~~ng~~~~~~~~y~i~AvgS-qDrSlSVW~T~~~RPl~-vi~--~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 282 NKNGTSTQPNCYYCIAAVGS-QDRSLSVWNTALPRPLF-VIH--NLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred cccCCccCCCcceEEEEEec-CCccEEEEecCCCCchh-hhh--hhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence 11 345555 99999999986664432 221 33466799999999999999999999999999875
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-27 Score=196.89 Aligned_cols=300 Identities=14% Similarity=0.195 Sum_probs=220.4
Q ss_pred ceeecccCCCceeEEEECcCC--ceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecc
Q 014125 52 QFRTSSIPNNFLKGIKWSPDG--SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFP 129 (430)
Q Consensus 52 ~~~~~~~h~~~v~~~~~sp~~--~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 129 (430)
...+..-|.+.|++++|+|.- +.+|+|..-|.|-+||+.+.+. +.....+...|+.+|.++.|+|
T Consensus 178 ~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~-------------d~d~v~~f~~hs~~Vs~l~F~P 244 (498)
T KOG4328|consen 178 ILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEK-------------DKDGVYLFTPHSGPVSGLKFSP 244 (498)
T ss_pred ecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCC-------------ccCceEEeccCCccccceEecC
Confidence 345677789999999999953 5889999999999999963321 1223446677889999999988
Q ss_pred ccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCCcc
Q 014125 130 HMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDF 208 (430)
Q Consensus 130 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~ 208 (430)
. +...+++.+.||+|++-|++.+.....+.... ....+.++.|+.+...++. ..=|...+||.+.++...
T Consensus 245 ~------n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~---d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~ 315 (498)
T KOG4328|consen 245 A------NTSQIYSSSYDGTIRLQDFEGNISEEVLSLDT---DNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEY 315 (498)
T ss_pred C------ChhheeeeccCceeeeeeecchhhHHHhhcCc---cceeeeeccccCCCccEEEeecccceEEEEeecCCccc
Confidence 5 44589999999999999998875443333311 1125667888887776664 455699999999876544
Q ss_pred cccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCcee----eEEeeccccCeEEEEEccCCCEEEEEe
Q 014125 209 EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL----LYVLHGQEGGVTHVQFSRDGNYLYTGG 284 (430)
Q Consensus 209 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~ 284 (430)
... .-|...|++++++|....+|++++.|++.+|||++.-.. ......|...|.+..|||.+-.|++.+
T Consensus 316 ~~~-------~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~ 388 (498)
T KOG4328|consen 316 ENL-------RLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTC 388 (498)
T ss_pred hhh-------hhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeec
Confidence 322 345557999999999999999999999999999986422 233345999999999999988899999
Q ss_pred cCCCeEEEEeCC---CCceEEEEeecccCCcc--ceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccC-Cee
Q 014125 285 RKDPYILCWDLR---KAVQVVYKLYRSSEHTN--QRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAAD-TVN 358 (430)
Q Consensus 285 ~~d~~i~i~d~~---~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~v~ 358 (430)
.|..|+|||.. ....+...+.....+.. ......|.|+..++++|-.-..|-|+|-..++.+..+..... .|.
T Consensus 389 -~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~ 467 (498)
T KOG4328|consen 389 -QDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIP 467 (498)
T ss_pred -cCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccc
Confidence 99999999984 22222222222122222 234578999999999999999999999998887777654443 555
Q ss_pred E-EEEcCCCcEEEEeeC-Cceeeec
Q 014125 359 G-FSFHPFLPMAASSSG-HRRFPVD 381 (430)
Q Consensus 359 ~-~~~~~~~~~l~s~~~-d~~~~vw 381 (430)
+ ..|||.+..+++|+. .|.+.||
T Consensus 468 ~vn~~HP~~~~~~aG~~s~Gki~vf 492 (498)
T KOG4328|consen 468 SVNEFHPMRDTLAAGGNSSGKIYVF 492 (498)
T ss_pred cceeecccccceeccCCccceEEEE
Confidence 4 489999996666654 4444444
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.8e-28 Score=186.85 Aligned_cols=267 Identities=17% Similarity=0.274 Sum_probs=225.4
Q ss_pred eeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE
Q 014125 113 SLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG 191 (430)
Q Consensus 113 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~ 191 (430)
..-.+|..+|..++|+|. .|+|-.|++++.||.-.+-+-++|..+.++.+|.. .|++...+.+....+ ++
T Consensus 8 l~c~ghtrpvvdl~~s~i----tp~g~flisa~kd~~pmlr~g~tgdwigtfeghkg-----avw~~~l~~na~~aasaa 78 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPI----TPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKG-----AVWSATLNKNATRAASAA 78 (334)
T ss_pred eEEcCCCcceeEEeccCC----CCCceEEEEeccCCCchhccCCCCCcEEeeeccCc-----ceeeeecCchhhhhhhhc
Confidence 345568889999999987 88999999999999999999999999999999887 999999988877777 45
Q ss_pred cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCce-eeEEeeccccCeEE
Q 014125 192 YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME-LLYVLHGQEGGVTH 270 (430)
Q Consensus 192 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~-~~~~~~~~~~~i~~ 270 (430)
.|-+-++||.-++... ....|...|.+++|+. +.+.|++|+.+.-+++||++..+ +...+.+|.+.|..
T Consensus 79 adftakvw~a~tgdel---------hsf~hkhivk~~af~~-ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~ 148 (334)
T KOG0278|consen 79 ADFTAKVWDAVTGDEL---------HSFEHKHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRT 148 (334)
T ss_pred ccchhhhhhhhhhhhh---------hhhhhhheeeeEEecc-cchhhhccchHHHhhhhhccCCCCCchhhcCCCCccee
Confidence 8999999998764321 1235667899999999 77899999999999999998764 56788899999999
Q ss_pred EEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccc
Q 014125 271 VQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGF 350 (430)
Q Consensus 271 ~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 350 (430)
+.|....+.|++++ .|++||+||.+++.... .+ ....+|+++.++++|++|.++ ..+.|.+||..+..+++.+
T Consensus 149 v~wc~eD~~iLSSa-dd~tVRLWD~rTgt~v~-sL----~~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~ 221 (334)
T KOG0278|consen 149 VLWCHEDKCILSSA-DDKTVRLWDHRTGTEVQ-SL----EFNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSY 221 (334)
T ss_pred EEEeccCceEEeec-cCCceEEEEeccCcEEE-EE----ecCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeec
Confidence 99999999999988 99999999999986554 32 245678999999999987765 4567999999999998887
Q ss_pred ccccCCeeEEEEcCCCcEEEEeeCCceeeecCCC--------------------------ccccccCCCcEEEEeecccc
Q 014125 351 QAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFE--------------------------DLHLSGDENCVSVWSFLYAS 404 (430)
Q Consensus 351 ~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~--------------------------~l~~~~~d~~i~~w~~~~~~ 404 (430)
+.. -.|.+.+.+|+...+++|+.|..++.+|.. ..++++.||+||+|....++
T Consensus 222 k~P-~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 222 KMP-CNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred cCc-cccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 743 478999999999999999999999888433 26788999999999888766
Q ss_pred cc
Q 014125 405 MM 406 (430)
Q Consensus 405 ~~ 406 (430)
..
T Consensus 301 ~~ 302 (334)
T KOG0278|consen 301 TY 302 (334)
T ss_pred ch
Confidence 54
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-27 Score=209.09 Aligned_cols=303 Identities=17% Similarity=0.195 Sum_probs=224.7
Q ss_pred CceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCce
Q 014125 61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV 140 (430)
Q Consensus 61 ~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (430)
....+|+..++-..++.++.. .+.||.+............. ..... ..-...++.|. .-+.++
T Consensus 40 ~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~------k~kqn----~~~S~~DVkW~------~~~~Nl 102 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRF------KTKQN----KFYSAADVKWG------QLYSNL 102 (839)
T ss_pred cccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeec------ccccc----eeeehhhcccc------cchhhh
Confidence 346778888998899988875 78888876543322111100 00000 01245567785 236789
Q ss_pred EEEEeCCCcEEEEeccC---CceeeeeecccccccccceEEEEECCCCcEEE-E-EcCCeEEEEEcCCCCCccccccccc
Q 014125 141 FASTTRDHPIHLWDATT---GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-A-GYNKSVRVFDVHRPGRDFEKYSTLK 215 (430)
Q Consensus 141 l~~~~~dg~i~vwd~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~-~~d~~i~v~d~~~~~~~~~~~~~~~ 215 (430)
||+++..|.|.+||+.. .+.+..+..|.. .+.++.|++....++ + +.||.|++||++.... .
T Consensus 103 IAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~R-----s~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S--------~ 169 (839)
T KOG0269|consen 103 IATCSTNGVISVWDLNKSIRNKLLTVFNEHER-----SANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS--------K 169 (839)
T ss_pred heeecCCCcEEEEecCccccchhhhHhhhhcc-----ceeeeeeccCCccEEEecCCCceEEEEeeecccc--------c
Confidence 99999999999999987 444445555554 899999999886655 4 4999999999987432 2
Q ss_pred CCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCc-eeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEe
Q 014125 216 GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-ELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWD 294 (430)
Q Consensus 216 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d 294 (430)
....+....|+.++|+|..++.|+++...|.+.+||++.. ++...+.+|.++|.++.|+|++.+||+|| .|+.|+|||
T Consensus 170 ~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGG-RDK~vkiWd 248 (839)
T KOG0269|consen 170 STFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGG-RDKMVKIWD 248 (839)
T ss_pred ccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecC-CCccEEEEe
Confidence 2234566789999999988999999999999999999975 46778889999999999999999999999 999999999
Q ss_pred CCCCceEEEEeecccCCccceEEEEEcCCCCE-EEEEc--cCCcEEEEEcCCC-CeecccccccCCeeEEEEcC-CCcEE
Q 014125 295 LRKAVQVVYKLYRSSEHTNQRILFDIEPSGRH-LGTGG--QDGLVHIYDLQTG-KWISGFQAAADTVNGFSFHP-FLPMA 369 (430)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~--~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l 369 (430)
+.+........ .....++.++.|-|...+ |++++ .|-.|+|||++.. -+..++..|...++.++|.. +...|
T Consensus 249 ~t~~~~~~~~t---InTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l 325 (839)
T KOG0269|consen 249 MTDSRAKPKHT---INTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINL 325 (839)
T ss_pred ccCCCccceeE---EeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceee
Confidence 98654332222 234578899999998765 66555 3778999999865 45667888999999999976 55688
Q ss_pred EEeeCCceeeec-----------CCCccccccCCCcEEE
Q 014125 370 ASSSGHRRFPVD-----------DFEDLHLSGDENCVSV 397 (430)
Q Consensus 370 ~s~~~d~~~~vw-----------~~~~l~~~~~d~~i~~ 397 (430)
.+++.|+.+... ......+.|.+|.+.+
T Consensus 326 ~s~sKD~tv~qh~~knat~pid~a~~~~~s~g~~g~l~f 364 (839)
T KOG0269|consen 326 WSCSKDGTVLQHLFKNATTPIDLANNGGLSVGQFGDLYF 364 (839)
T ss_pred EeecCccHHHHhhhhcccChhhhcCcccccccccCceeE
Confidence 999999988765 2233455566665543
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.3e-27 Score=186.08 Aligned_cols=250 Identities=16% Similarity=0.295 Sum_probs=203.2
Q ss_pred eecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-EcC
Q 014125 115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYN 193 (430)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d 193 (430)
..+|...|+.++- ......+.+++.|.+.++|.++++.++..+.+|.+ .|.+++|++.+.++++ +.|
T Consensus 144 ~~GHkDGiW~Vaa-------~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~G-----SVNsikfh~s~~L~lTaSGD 211 (481)
T KOG0300|consen 144 LEGHKDGIWHVAA-------DSTQPICGTASADHTARIWSLESGACLATYTGHTG-----SVNSIKFHNSGLLLLTASGD 211 (481)
T ss_pred hcccccceeeehh-------hcCCcceeecccccceeEEeeccccceeeeccccc-----ceeeEEeccccceEEEccCC
Confidence 3456678888876 33345899999999999999999999999998876 9999999999998884 589
Q ss_pred CeEEEEEc------CCCCCc--------------------------ccccccccCCCCCCCcceEEEEEcCCCCceEEEe
Q 014125 194 KSVRVFDV------HRPGRD--------------------------FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIG 241 (430)
Q Consensus 194 ~~i~v~d~------~~~~~~--------------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 241 (430)
++-.||.. ..+..+ ...+..+...+.+|...|.+..|.. ++..++++
T Consensus 212 ~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~-gg~Q~vTa 290 (481)
T KOG0300|consen 212 ETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA-GGQQMVTA 290 (481)
T ss_pred cchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc-Ccceeeee
Confidence 99999972 111000 0012223345578889999999998 88899999
Q ss_pred cCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEc
Q 014125 242 SYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIE 321 (430)
Q Consensus 242 ~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~ 321 (430)
+.|.+-.+||+++++++..+.+|....+.++-+|..+++++++ .|-+.++||++..-..+ ..+.+|...|+++.|.
T Consensus 291 SWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsS-rDtTFRLWDFReaI~sV---~VFQGHtdtVTS~vF~ 366 (481)
T KOG0300|consen 291 SWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSS-RDTTFRLWDFREAIQSV---AVFQGHTDTVTSVVFN 366 (481)
T ss_pred eccccceeeeeccCceeccccCcchhccccccCCcceEEEEec-cCceeEeccchhhccee---eeecccccceeEEEEe
Confidence 9999999999999999999999999999999999999998888 99999999999654443 3347999999999998
Q ss_pred CCCCEEEEEccCCcEEEEEcCCCC-eecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCC
Q 014125 322 PSGRHLGTGGQDGLVHIYDLQTGK-WISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 322 ~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~ 383 (430)
.+ ..+++|+.|.+|+|||+++.+ ++.+++ ..++++.++.+..++.++.--.+..++++|.
T Consensus 367 ~d-d~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDl 427 (481)
T KOG0300|consen 367 TD-DRVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDL 427 (481)
T ss_pred cC-CceeecCCCceEEEeeeccccCcceeee-cCCccceeEeecCCceEEeccCCceEEEEec
Confidence 75 568999999999999999754 456665 5678899999988888888776666666654
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-26 Score=181.44 Aligned_cols=258 Identities=15% Similarity=0.216 Sum_probs=198.1
Q ss_pred CCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCC-ceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeE
Q 014125 119 GESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTG-LLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSV 196 (430)
Q Consensus 119 ~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i 196 (430)
...|.+++|+|. ...+++.++.||+||+|+++.. ..+. .....+..+|.+++|+.+|..++ ++.|+.+
T Consensus 27 ~DsIS~l~FSP~------~~~~~~A~SWD~tVR~wevq~~g~~~~----ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~ 96 (347)
T KOG0647|consen 27 EDSISALAFSPQ------ADNLLAAGSWDGTVRIWEVQNSGQLVP----KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQA 96 (347)
T ss_pred ccchheeEeccc------cCceEEecccCCceEEEEEecCCcccc----hhhhccCCCeEEEEEccCCceEEeeccCCce
Confidence 468999999552 4567779999999999999873 3322 22223445999999999998888 4599999
Q ss_pred EEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCc--eEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEc
Q 014125 197 RVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTG--MLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFS 274 (430)
Q Consensus 197 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~ 274 (430)
++||+.++.. .....|..+|.++.|-+ +.. .|++|+.|.+|+.||++...++.++. ....++++..
T Consensus 97 k~wDL~S~Q~---------~~v~~Hd~pvkt~~wv~-~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv- 164 (347)
T KOG0647|consen 97 KLWDLASGQV---------SQVAAHDAPVKTCHWVP-GMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADV- 164 (347)
T ss_pred EEEEccCCCe---------eeeeecccceeEEEEec-CCCcceeEecccccceeecccCCCCeeeeee-ccceeeehhc-
Confidence 9999987421 11267889999999987 544 89999999999999999999988887 4566777665
Q ss_pred cCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCC--Ceeccccc
Q 014125 275 RDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTG--KWISGFQA 352 (430)
Q Consensus 275 ~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~ 352 (430)
....++++. .++.|.+|+++++....+... ....-.+.+++..++....+.|+-+|++.|..++.+ +.-..|+.
T Consensus 165 -~~pm~vVat-a~r~i~vynL~n~~te~k~~~--SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkC 240 (347)
T KOG0647|consen 165 -LYPMAVVAT-AERHIAVYNLENPPTEFKRIE--SPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKC 240 (347)
T ss_pred -cCceeEEEe-cCCcEEEEEcCCCcchhhhhc--CcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEE
Confidence 345677777 899999999988754433332 224456788988888888899999999999999887 33445666
Q ss_pred ccC---------CeeEEEEcCCCcEEEEeeCCceeeecCCCc---------------cccccCCCcEEEEeecc
Q 014125 353 AAD---------TVNGFSFHPFLPMAASSSGHRRFPVDDFED---------------LHLSGDENCVSVWSFLY 402 (430)
Q Consensus 353 ~~~---------~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~---------------l~~~~~d~~i~~w~~~~ 402 (430)
|.. .|++|+|+|....|+|+++||++.+||.+. ..+-..+|.|..|.+.+
T Consensus 241 HR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~gY 314 (347)
T KOG0647|consen 241 HRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALGY 314 (347)
T ss_pred eccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEeec
Confidence 652 588999999999999999999999997543 12224688888887664
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-27 Score=195.14 Aligned_cols=244 Identities=18% Similarity=0.249 Sum_probs=190.9
Q ss_pred ceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecccc
Q 014125 52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (430)
Q Consensus 52 ~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (430)
...++.|-.+.|+++.|.++++.+++++.|+.+++|+++..+....+ .+|...|.++.|.
T Consensus 211 ~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TL-----------------sGHtdkVt~ak~~--- 270 (459)
T KOG0288|consen 211 LISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTL-----------------SGHTDKVTAAKFK--- 270 (459)
T ss_pred hhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhh-----------------cccccceeeehhh---
Confidence 44678888899999999999999999999999999999876554333 3366899999983
Q ss_pred CccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccc
Q 014125 132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEK 210 (430)
Q Consensus 132 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~ 210 (430)
.....+++|+.|.+|++||+....+..++-... .+..|..+ ...+++| .|++|++||++.+....
T Consensus 271 ----~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S------~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~-- 336 (459)
T KOG0288|consen 271 ----LSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGS------QCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTR-- 336 (459)
T ss_pred ----ccccceeeccccchhhhhhhhhhheeccccccc------cccceEec--ceeeeecccccceEEEeccCCceee--
Confidence 334459999999999999999987776654433 44455554 3445566 89999999998753321
Q ss_pred cccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeecc----ccCeEEEEEccCCCEEEEEecC
Q 014125 211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ----EGGVTHVQFSRDGNYLYTGGRK 286 (430)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~~ 286 (430)
. ..-.+.|+++..++ ++..+.+++.|.++.++|+++.+....+.+. ....+.+.|||++.|+++|+ .
T Consensus 337 ------s-v~~gg~vtSl~ls~-~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS-~ 407 (459)
T KOG0288|consen 337 ------S-VPLGGRVTSLDLSM-DGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGS-A 407 (459)
T ss_pred ------E-eecCcceeeEeecc-CCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeecc-C
Confidence 1 12234799999999 6677778899999999999998887776642 23588999999999999999 9
Q ss_pred CCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEE
Q 014125 287 DPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYD 340 (430)
Q Consensus 287 d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd 340 (430)
||.|+||++.+++... .+. .......|++++|+|.|.+|++++.++.+.+|.
T Consensus 408 dgsv~iW~v~tgKlE~-~l~-~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 408 DGSVYIWSVFTGKLEK-VLS-LSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred CCcEEEEEccCceEEE-Eec-cCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 9999999999885432 322 122333799999999999999999999999993
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5e-27 Score=197.92 Aligned_cols=243 Identities=19% Similarity=0.269 Sum_probs=197.1
Q ss_pred eeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCc---eeeeeecccccccccceEEEEECCCCcEEEE
Q 014125 114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGL---LRCTYRAYDAVDEITAAFSVAFNPTGTKIFA 190 (430)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 190 (430)
..+.|++-|.++.. +...+++++|+.. .|+|||+.... .+..+... .....|.++...|||+.|++
T Consensus 414 ~tL~HGEvVcAvtI-------S~~trhVyTgGkg-cVKVWdis~pg~k~PvsqLdcl---~rdnyiRSckL~pdgrtLiv 482 (705)
T KOG0639|consen 414 NTLAHGEVVCAVTI-------SNPTRHVYTGGKG-CVKVWDISQPGNKSPVSQLDCL---NRDNYIRSCKLLPDGRTLIV 482 (705)
T ss_pred hhhccCcEEEEEEe-------cCCcceeEecCCC-eEEEeeccCCCCCCcccccccc---CcccceeeeEecCCCceEEe
Confidence 45678888888877 6677889998865 49999997542 22222222 22237889999999998885
Q ss_pred -EcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeE
Q 014125 191 -GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVT 269 (430)
Q Consensus 191 -~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~ 269 (430)
|.-.++.|||+..+.... +..+....-...+++.+| +.++.+++..||.|.|||+.+...++.|++|...+.
T Consensus 483 GGeastlsiWDLAapTpri------kaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGas 555 (705)
T KOG0639|consen 483 GGEASTLSIWDLAAPTPRI------KAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGAS 555 (705)
T ss_pred ccccceeeeeeccCCCcch------hhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccceeeecccCCCCCce
Confidence 478899999998754322 222233334577899999 677899999999999999999999999999999999
Q ss_pred EEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecc
Q 014125 270 HVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISG 349 (430)
Q Consensus 270 ~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 349 (430)
||..+++|..|.+|+ -|++||.||++++.++.. ....+.|.++..+|++.+|+.|-+++.+.|.... +...+.
T Consensus 556 cIdis~dGtklWTGG-lDntvRcWDlregrqlqq-----hdF~SQIfSLg~cP~~dWlavGMens~vevlh~s-kp~kyq 628 (705)
T KOG0639|consen 556 CIDISKDGTKLWTGG-LDNTVRCWDLREGRQLQQ-----HDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS-KPEKYQ 628 (705)
T ss_pred eEEecCCCceeecCC-Cccceeehhhhhhhhhhh-----hhhhhhheecccCCCccceeeecccCcEEEEecC-Ccccee
Confidence 999999999999999 999999999999865432 3456789999999999999999999999988766 344566
Q ss_pred cccccCCeeEEEEcCCCcEEEEeeCCceeeec
Q 014125 350 FQAAADTVNGFSFHPFLPMAASSSGHRRFPVD 381 (430)
Q Consensus 350 ~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw 381 (430)
+..|++.|.++.|.+.|+++++.+.|+-+..|
T Consensus 629 lhlheScVLSlKFa~cGkwfvStGkDnlLnaw 660 (705)
T KOG0639|consen 629 LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAW 660 (705)
T ss_pred ecccccEEEEEEecccCceeeecCchhhhhhc
Confidence 77799999999999999999999999999998
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-26 Score=191.15 Aligned_cols=246 Identities=17% Similarity=0.243 Sum_probs=200.5
Q ss_pred eeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeee-eec------c-----cc-cccccceEEE
Q 014125 113 SLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCT-YRA------Y-----DA-VDEITAAFSV 179 (430)
Q Consensus 113 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~------~-----~~-~~~~~~v~~~ 179 (430)
.....|..++.+++. +|+..+.++++.+|+|.-|++.+++.... ++. + .. ..|...+.++
T Consensus 136 ~~~~~H~~s~~~val-------s~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~ 208 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVAL-------SPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTL 208 (479)
T ss_pred eeeccccCcceEEEe-------eccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEE
Confidence 344557788999998 77999999999999999999998874411 111 1 11 2456689999
Q ss_pred EECCCCcEEEEE-cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceee
Q 014125 180 AFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELL 258 (430)
Q Consensus 180 ~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~ 258 (430)
+.++|+++|++| .|..|.||+.++. .....+.+|.+.|.+++|-. +...+++++.|++|++|++.....+
T Consensus 209 avS~Dgkylatgg~d~~v~Iw~~~t~--------ehv~~~~ghr~~V~~L~fr~-gt~~lys~s~Drsvkvw~~~~~s~v 279 (479)
T KOG0299|consen 209 AVSSDGKYLATGGRDRHVQIWDCDTL--------EHVKVFKGHRGAVSSLAFRK-GTSELYSASADRSVKVWSIDQLSYV 279 (479)
T ss_pred EEcCCCcEEEecCCCceEEEecCccc--------chhhcccccccceeeeeeec-CccceeeeecCCceEEEehhHhHHH
Confidence 999999999965 8999999999873 33344689999999999998 8889999999999999999998889
Q ss_pred EEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEE
Q 014125 259 YVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHI 338 (430)
Q Consensus 259 ~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v 338 (430)
.++-+|...|.+|....-++.+-+++ .|+++++|++....+.++ .++.+.+-|++|-.+ ..+++|+.+|.|.+
T Consensus 280 etlyGHqd~v~~IdaL~reR~vtVGg-rDrT~rlwKi~eesqlif-----rg~~~sidcv~~In~-~HfvsGSdnG~IaL 352 (479)
T KOG0299|consen 280 ETLYGHQDGVLGIDALSRERCVTVGG-RDRTVRLWKIPEESQLIF-----RGGEGSIDCVAFIND-EHFVSGSDNGSIAL 352 (479)
T ss_pred HHHhCCccceeeechhcccceEEecc-ccceeEEEeccccceeee-----eCCCCCeeeEEEecc-cceeeccCCceEEE
Confidence 99999999999999888888777777 999999999966544432 356778888998754 67899999999999
Q ss_pred EEcCCCCeeccccc-c-----------cCCeeEEEEcCCCcEEEEeeCCceeeec
Q 014125 339 YDLQTGKWISGFQA-A-----------ADTVNGFSFHPFLPMAASSSGHRRFPVD 381 (430)
Q Consensus 339 wd~~~~~~~~~~~~-~-----------~~~v~~~~~~~~~~~l~s~~~d~~~~vw 381 (430)
|++.+.+++.+.+. | ...|++++..|...++++|+.+|.+++|
T Consensus 353 Ws~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW 407 (479)
T KOG0299|consen 353 WSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLW 407 (479)
T ss_pred eeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEE
Confidence 99999988776541 1 1268899999999999999977666666
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-25 Score=177.19 Aligned_cols=265 Identities=17% Similarity=0.251 Sum_probs=193.1
Q ss_pred ecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCcc
Q 014125 55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS 134 (430)
Q Consensus 55 ~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 134 (430)
...+|.+-|.++.|.+.|+.+|||+.|++|+|||..+.. ..-........|++.|..+.|.+
T Consensus 8 i~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s-------------~~W~~Ts~Wrah~~Si~rV~WAh----- 69 (361)
T KOG2445|consen 8 IDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDS-------------GTWSCTSSWRAHDGSIWRVVWAH----- 69 (361)
T ss_pred cccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCC-------------CceEEeeeEEecCCcEEEEEecC-----
Confidence 457899999999999999999999999999999975442 11222334456778999999966
Q ss_pred CCCCceEEEEeCCCcEEEEeccCC-------ceeeeeecccccccccceEEEEECCCC--cEEE-EEcCCeEEEEEcCCC
Q 014125 135 DPTSCVFASTTRDHPIHLWDATTG-------LLRCTYRAYDAVDEITAAFSVAFNPTG--TKIF-AGYNKSVRVFDVHRP 204 (430)
Q Consensus 135 ~~~~~~l~~~~~dg~i~vwd~~~~-------~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~-~~~d~~i~v~d~~~~ 204 (430)
..-|+.+|+++.|+++.||.-... +.+.... -......|+.+.|.|.. -.++ ++.||.||||+.-.+
T Consensus 70 PEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~tt---l~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp 146 (361)
T KOG2445|consen 70 PEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTT---LVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDP 146 (361)
T ss_pred ccccceEEEEecCCceeeeeecccccccccceeEEEEE---eecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCc
Confidence 345889999999999999986321 1111111 11233489999999974 4555 569999999998654
Q ss_pred CCcc--ccc---ccccCCCCCCCcceEEEEEcCC--CCceEEEecCC-----CeEEEEEcCCc----eeeEEeeccccCe
Q 014125 205 GRDF--EKY---STLKGNKEGQAGIMSAIAFSPT--HTGMLAIGSYS-----QTSAIYREDNM----ELLYVLHGQEGGV 268 (430)
Q Consensus 205 ~~~~--~~~---~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~d-----g~v~~~d~~~~----~~~~~~~~~~~~i 268 (430)
.... ... ..+......+..+..|+.|+|. ...+||+|+.+ +.++||..... ..+..+.+|..+|
T Consensus 147 ~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI 226 (361)
T KOG2445|consen 147 MNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPI 226 (361)
T ss_pred cccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcc
Confidence 3211 111 1111222345667889999873 25678888876 57888876543 3456677899999
Q ss_pred EEEEEccC----CCEEEEEecCCCeEEEEeCCCCc----------------eEEEEeecccCCccceEEEEEcCCCCEEE
Q 014125 269 THVQFSRD----GNYLYTGGRKDPYILCWDLRKAV----------------QVVYKLYRSSEHTNQRILFDIEPSGRHLG 328 (430)
Q Consensus 269 ~~~~~~~~----~~~l~~~~~~d~~i~i~d~~~~~----------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 328 (430)
+.|+|.|+ ...|++++ .|| |+||.+.... ..+..+.....|.+.|+.+.|+-.|..|+
T Consensus 227 ~di~wAPn~Gr~y~~lAvA~-kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLs 304 (361)
T KOG2445|consen 227 RDISWAPNIGRSYHLLAVAT-KDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILS 304 (361)
T ss_pred eeeeeccccCCceeeEEEee-cCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEe
Confidence 99999996 24677887 899 9999987421 12333444578999999999999999999
Q ss_pred EEccCCcEEEEEcC
Q 014125 329 TGGQDGLVHIYDLQ 342 (430)
Q Consensus 329 ~~~~dg~i~vwd~~ 342 (430)
+.+.||.|++|...
T Consensus 305 StGdDG~VRLWkan 318 (361)
T KOG2445|consen 305 STGDDGCVRLWKAN 318 (361)
T ss_pred ecCCCceeeehhhh
Confidence 99999999999865
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-25 Score=174.26 Aligned_cols=234 Identities=17% Similarity=0.211 Sum_probs=193.2
Q ss_pred eecccCCCceeEEEECc-CCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccC
Q 014125 54 RTSSIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS 132 (430)
Q Consensus 54 ~~~~~h~~~v~~~~~sp-~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 132 (430)
....+|.+.|-.++|+| ....|++++.|.+|++||...++.. ........-.-+.|
T Consensus 58 ~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~------------------~~i~~~~eni~i~w----- 114 (313)
T KOG1407|consen 58 LVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCT------------------ARIETKGENINITW----- 114 (313)
T ss_pred hcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEE------------------EEeeccCcceEEEE-----
Confidence 46789999999999998 5679999999999999999876442 22222233345677
Q ss_pred ccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCccccc
Q 014125 133 ASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKY 211 (430)
Q Consensus 133 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~ 211 (430)
+|+|.+++.++.|..|.+.|..+.+.....+... .+..++|+-++.+++ +...|+|.|.....
T Consensus 115 --sp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~------e~ne~~w~~~nd~Fflt~GlG~v~ILsyps-------- 178 (313)
T KOG1407|consen 115 --SPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKF------EVNEISWNNSNDLFFLTNGLGCVEILSYPS-------- 178 (313)
T ss_pred --cCCCCEEEEecCcccEEEEEecccceeehhcccc------eeeeeeecCCCCEEEEecCCceEEEEeccc--------
Confidence 7899999999999999999998887766555433 667888987777777 45679999988754
Q ss_pred ccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEE
Q 014125 212 STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYIL 291 (430)
Q Consensus 212 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~ 291 (430)
......+..|+....|+.|+| .+++||+|+.|..+.+||+..--+++.+..+.-+|..+.|+-+|++|++++ .|..|-
T Consensus 179 Lkpv~si~AH~snCicI~f~p-~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaS-EDh~ID 256 (313)
T KOG1407|consen 179 LKPVQSIKAHPSNCICIEFDP-DGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASAS-EDHFID 256 (313)
T ss_pred cccccccccCCcceEEEEECC-CCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccC-ccceEE
Confidence 233344578889999999999 778999999999999999999888999999999999999999999999999 999999
Q ss_pred EEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccC
Q 014125 292 CWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQD 333 (430)
Q Consensus 292 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 333 (430)
|=++.++.+.... .+.++...++|+|...+||.+..|
T Consensus 257 IA~vetGd~~~eI-----~~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 257 IAEVETGDRVWEI-----PCEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred eEecccCCeEEEe-----eccCCceeEEecCCCceeeEEecC
Confidence 9999999765432 467888999999999999988765
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.9e-27 Score=203.31 Aligned_cols=254 Identities=15% Similarity=0.307 Sum_probs=206.2
Q ss_pred CCCCceEEEEeCCCcEEEEeccCCce------eeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCc
Q 014125 135 DPTSCVFASTTRDHPIHLWDATTGLL------RCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRD 207 (430)
Q Consensus 135 ~~~~~~l~~~~~dg~i~vwd~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~ 207 (430)
.|.+++|++|++||.|++|+...... ...++.|. ..|..+....+++.++ ++.|-+|++|+.....
T Consensus 34 a~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~Hs-----DWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~-- 106 (735)
T KOG0308|consen 34 APNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHS-----DWVNDIILCGNGKTLISASSDTTVKVWNAHKDN-- 106 (735)
T ss_pred CCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhH-----hHHhhHHhhcCCCceEEecCCceEEEeecccCc--
Confidence 45677899999999999999865432 33344433 3788888888886666 7799999999997643
Q ss_pred ccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCce--ee--------EEee-ccccCeEEEEEccC
Q 014125 208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME--LL--------YVLH-GQEGGVTHVQFSRD 276 (430)
Q Consensus 208 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~--~~--------~~~~-~~~~~i~~~~~~~~ 276 (430)
.-....+..|...|.|+++-..+..++|+|+-|+.|.+||++++. .+ ..+. ++..+|++++.++.
T Consensus 107 ----~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t 182 (735)
T KOG0308|consen 107 ----TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQT 182 (735)
T ss_pred ----chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCc
Confidence 123334578899999999944378899999999999999999772 22 2222 67789999999999
Q ss_pred CCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCC
Q 014125 277 GNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADT 356 (430)
Q Consensus 277 ~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 356 (430)
|..|++|+ ..+.+++||.++..+... + .+|...|..+..++||+.+++++.||+|++||+.-.+++.++..|...
T Consensus 183 ~t~ivsGg-tek~lr~wDprt~~kimk-L---rGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~ 257 (735)
T KOG0308|consen 183 GTIIVSGG-TEKDLRLWDPRTCKKIMK-L---RGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEG 257 (735)
T ss_pred ceEEEecC-cccceEEeccccccceee-e---eccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCc
Confidence 98888888 999999999999865542 2 589999999999999999999999999999999999999999999999
Q ss_pred eeEEEEcCCCcEEEEeeCCceeeecCCCc-------------------------cccccCCCcEEEEeecccc
Q 014125 357 VNGFSFHPFLPMAASSSGHRRFPVDDFED-------------------------LHLSGDENCVSVWSFLYAS 404 (430)
Q Consensus 357 v~~~~~~~~~~~l~s~~~d~~~~vw~~~~-------------------------l~~~~~d~~i~~w~~~~~~ 404 (430)
|+++.-+|+-..+.+|+.||.|..-+... +-++..|+.|+-|.....-
T Consensus 258 VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~ 330 (735)
T KOG0308|consen 258 VWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDI 330 (735)
T ss_pred eEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCcccc
Confidence 99999999999999999999988764432 3455668888888766544
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.4e-26 Score=188.24 Aligned_cols=295 Identities=15% Similarity=0.166 Sum_probs=218.2
Q ss_pred eecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCc
Q 014125 54 RTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (430)
Q Consensus 54 ~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (430)
..-..-.+.|++|.|+|....|++|+.||+++||.++.... ..... ..-...+|.+.+|
T Consensus 207 Na~~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N--------------~~lqS-~~l~~fPi~~a~f------ 265 (514)
T KOG2055|consen 207 NAAHPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVN--------------PKLQS-IHLEKFPIQKAEF------ 265 (514)
T ss_pred ccCCcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccC--------------hhhee-eeeccCccceeee------
Confidence 34444567899999999999999999999999999875321 11111 1123357888888
Q ss_pred cCCCCc-eEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCccccc
Q 014125 134 SDPTSC-VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKY 211 (430)
Q Consensus 134 ~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~ 211 (430)
.|+|. .+++++....++.||+.+.+....-+.... . ...+..+..+|++.+|+ .|..|.|.+....+..- +
T Consensus 266 -~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~-e-~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~el----i 338 (514)
T KOG2055|consen 266 -APNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGV-E-EKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKEL----I 338 (514)
T ss_pred -cCCCceEEEecccceEEEEeeccccccccccCCCCc-c-cchhheeEecCCCCeEEEcccCceEEeehhhhhhh----h
Confidence 66787 899999999999999998876544333221 1 22566788899999998 78999999988765311 1
Q ss_pred ccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeecccc-CeEEEEEccCCCEEEEEecCCCeE
Q 014125 212 STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEG-GVTHVQFSRDGNYLYTGGRKDPYI 290 (430)
Q Consensus 212 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~~d~~i 290 (430)
.. ....+.|..++|+.+ +..|++++.+|.|.+||++...+++.+....+ .-++++.++++.+|++|+ ..|.|
T Consensus 339 ~s-----~KieG~v~~~~fsSd-sk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS-~~GiV 411 (514)
T KOG2055|consen 339 TS-----FKIEGVVSDFTFSSD-SKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGS-DSGIV 411 (514)
T ss_pred he-----eeeccEEeeEEEecC-CcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEecc-CcceE
Confidence 11 123467999999984 56777777789999999999998888874322 235778889999999999 99999
Q ss_pred EEEeCCCCceE--EEEeecccCCccceEEEEEcCCCCEEEEEcc--CCcEEEEEcCCCCeeccccccc---CCeeEEEEc
Q 014125 291 LCWDLRKAVQV--VYKLYRSSEHTNQRILFDIEPSGRHLGTGGQ--DGLVHIYDLQTGKWISGFQAAA---DTVNGFSFH 363 (430)
Q Consensus 291 ~i~d~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~---~~v~~~~~~ 363 (430)
.|||..+.... ..++.....-...|++++|+|++++||.+|. +..+++-.+.+......++... +.|++++|+
T Consensus 412 NIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFS 491 (514)
T KOG2055|consen 412 NIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFS 491 (514)
T ss_pred EEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEec
Confidence 99997643111 1122223445678999999999999888775 5679999988877766665433 368999999
Q ss_pred CCCcEEEEeeCCceeeecCC
Q 014125 364 PFLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 364 ~~~~~l~s~~~d~~~~vw~~ 383 (430)
|.+.+||.|...|++.+|.+
T Consensus 492 P~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 492 PNSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred CCCceEEeecCCCceeeEee
Confidence 99999999997777776654
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-24 Score=190.01 Aligned_cols=281 Identities=14% Similarity=0.169 Sum_probs=195.7
Q ss_pred CceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceE-EEEeCCCcE
Q 014125 72 GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF-ASTTRDHPI 150 (430)
Q Consensus 72 ~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l-~~~~~dg~i 150 (430)
++.+++++.|+.|++||+.+++.... +.....+..++| +|++..+ ++++.++.|
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~------------------~~~~~~~~~l~~-------~~dg~~l~~~~~~~~~v 55 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRT------------------FPVGQRPRGITL-------SKDGKLLYVCASDSDTI 55 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEE------------------EECCCCCCceEE-------CCCCCEEEEEECCCCeE
Confidence 35788999999999999986643211 111234566777 6788766 567788999
Q ss_pred EEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-E-cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEE
Q 014125 151 HLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-G-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAI 228 (430)
Q Consensus 151 ~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 228 (430)
++||+.+++....+..+. .+..++|+|+++.+++ + .++.|++||+..... . ..+ . ....+.++
T Consensus 56 ~~~d~~~~~~~~~~~~~~------~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~-~---~~~----~-~~~~~~~~ 120 (300)
T TIGR03866 56 QVIDLATGEVIGTLPSGP------DPELFALHPNGKILYIANEDDNLVTVIDIETRKV-L---AEI----P-VGVEPEGM 120 (300)
T ss_pred EEEECCCCcEEEeccCCC------CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeE-E---eEe----e-CCCCcceE
Confidence 999999988776655432 3457899999987764 3 589999999976311 1 111 1 11235789
Q ss_pred EEcCCCCceEEEecCCC-eEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeec
Q 014125 229 AFSPTHTGMLAIGSYSQ-TSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYR 307 (430)
Q Consensus 229 ~~~~~~~~~l~~~~~dg-~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~ 307 (430)
+|+| ++.+++++..++ .+.+||.++++....+. ....+.+++|+|++++|++++..++.|++||+++..........
T Consensus 121 ~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~ 198 (300)
T TIGR03866 121 AVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFE 198 (300)
T ss_pred EECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeec
Confidence 9999 556777777664 57788998877665543 23456789999999988766536999999999987433211111
Q ss_pred cc---CCccceEEEEEcCCCCEEEE-EccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCC
Q 014125 308 SS---EHTNQRILFDIEPSGRHLGT-GGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 308 ~~---~~~~~v~~~~~~~~~~~l~~-~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~ 383 (430)
.. ........++|+|+++++++ .+.++.+.+||+.+++.+..+. +...+.+++|+|++++|++++.
T Consensus 199 ~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~--------- 268 (300)
T TIGR03866 199 IPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNG--------- 268 (300)
T ss_pred ccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcC---------
Confidence 00 01123456889999998554 4556789999999988776553 4457899999999999887642
Q ss_pred CccccccCCCcEEEEeecccccccccCC
Q 014125 384 EDLHLSGDENCVSVWSFLYASMMENADG 411 (430)
Q Consensus 384 ~~l~~~~~d~~i~~w~~~~~~~~~~~~~ 411 (430)
.++.|++||+..++.+..+..
T Consensus 269 -------~~~~i~v~d~~~~~~~~~~~~ 289 (300)
T TIGR03866 269 -------VSNDVSVIDVAALKVIKSIKV 289 (300)
T ss_pred -------CCCeEEEEECCCCcEEEEEEc
Confidence 467788888887777666643
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-26 Score=177.27 Aligned_cols=244 Identities=17% Similarity=0.237 Sum_probs=185.8
Q ss_pred cCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCc---eeeeeecccccccccceEEEEECC--CCcEEE-E
Q 014125 117 TEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGL---LRCTYRAYDAVDEITAAFSVAFNP--TGTKIF-A 190 (430)
Q Consensus 117 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~-~ 190 (430)
.|...|.++.. .-.|++|+|++.|++|+|+..+.+. .+.++.+|.+ +|..++|.. -|.+|+ +
T Consensus 9 ~H~D~IHda~l-------DyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~G-----PVwqv~wahPk~G~iLASc 76 (299)
T KOG1332|consen 9 QHEDMIHDAQL-------DYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSG-----PVWKVAWAHPKFGTILASC 76 (299)
T ss_pred hhhhhhhHhhh-------hhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCC-----CeeEEeecccccCcEeeEe
Confidence 34455555443 3368899999999999999998653 4556666665 999999976 688898 5
Q ss_pred EcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCC-CceEEEecCCCeEEEEEcCCc---eeeEEeecccc
Q 014125 191 GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTH-TGMLAIGSYSQTSAIYREDNM---ELLYVLHGQEG 266 (430)
Q Consensus 191 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~~~d~~~~---~~~~~~~~~~~ 266 (430)
+.||.|.||.-..+ .+. .......|...|++++|.|.+ +-+|++++.||.|.+.+.++. ........|.-
T Consensus 77 sYDgkVIiWke~~g--~w~----k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~ 150 (299)
T KOG1332|consen 77 SYDGKVIIWKEENG--RWT----KAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEI 150 (299)
T ss_pred ecCceEEEEecCCC--chh----hhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccc
Confidence 69999999997664 221 122346788999999999954 557899999999999987764 23445568999
Q ss_pred CeEEEEEccC---C-----------CEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCC----CEEE
Q 014125 267 GVTHVQFSRD---G-----------NYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSG----RHLG 328 (430)
Q Consensus 267 ~i~~~~~~~~---~-----------~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~l~ 328 (430)
.|++++|.|- | +.|++++ .|..|+||+..+..-... ....+|...|+.++|.|.- .+||
T Consensus 151 GvnsVswapa~~~g~~~~~~~~~~~krlvSgG-cDn~VkiW~~~~~~w~~e--~~l~~H~dwVRDVAwaP~~gl~~s~iA 227 (299)
T KOG1332|consen 151 GVNSVSWAPASAPGSLVDQGPAAKVKRLVSGG-CDNLVKIWKFDSDSWKLE--RTLEGHKDWVRDVAWAPSVGLPKSTIA 227 (299)
T ss_pred ccceeeecCcCCCccccccCcccccceeeccC-CccceeeeecCCcchhhh--hhhhhcchhhhhhhhccccCCCceeeE
Confidence 9999999986 4 5699999 999999999988632221 1247899999999999963 5799
Q ss_pred EEccCCcEEEEEcCCC-C-e-ecccccccCCeeEEEEcCCCcEEEEeeCCceeeec
Q 014125 329 TGGQDGLVHIYDLQTG-K-W-ISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVD 381 (430)
Q Consensus 329 ~~~~dg~i~vwd~~~~-~-~-~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw 381 (430)
+++.||++.||..+.. + . ...+......+..+.|++.|+.|+.++.|+.+.+|
T Consensus 228 S~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlw 283 (299)
T KOG1332|consen 228 SCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLW 283 (299)
T ss_pred EecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEE
Confidence 9999999999987632 1 1 22233456789999999999999999865555555
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-24 Score=181.56 Aligned_cols=323 Identities=15% Similarity=0.194 Sum_probs=235.1
Q ss_pred CCceeEEEECcCCc-eEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCC
Q 014125 60 NNFLKGIKWSPDGS-SFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS 138 (430)
Q Consensus 60 ~~~v~~~~~sp~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 138 (430)
++.|....|+|.+. .+++++ .|.+..|++..+.+...... +.....+.|.+++|. ++|
T Consensus 200 ne~v~~a~FHPtd~nliit~G-k~H~~Fw~~~~~~l~k~~~~-------------fek~ekk~Vl~v~F~-------eng 258 (626)
T KOG2106|consen 200 NEVVFLATFHPTDPNLIITCG-KGHLYFWTLRGGSLVKRQGI-------------FEKREKKFVLCVTFL-------ENG 258 (626)
T ss_pred cceEEEEEeccCCCcEEEEeC-CceEEEEEccCCceEEEeec-------------cccccceEEEEEEEc-------CCC
Confidence 45678899999555 555555 57899999988765432211 122233679999994 444
Q ss_pred ceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCc----------c
Q 014125 139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRD----------F 208 (430)
Q Consensus 139 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~----------~ 208 (430)
-+++|..+|.|.||+..+.+..+....|.. .|.+++.-.+|.++.++.|..|..||-...... .
T Consensus 259 -dviTgDS~G~i~Iw~~~~~~~~k~~~aH~g-----gv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~i 332 (626)
T KOG2106|consen 259 -DVITGDSGGNILIWSKGTNRISKQVHAHDG-----GVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPI 332 (626)
T ss_pred -CEEeecCCceEEEEeCCCceEEeEeeecCC-----ceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCe
Confidence 488999999999999987776666655554 999999999999999779999999993321100 0
Q ss_pred ccc----------------------ccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeecccc
Q 014125 209 EKY----------------------STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEG 266 (430)
Q Consensus 209 ~~~----------------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~ 266 (430)
+.+ ........+|......++.+| ..+.+++++.|+.+++|+ ..++..... -..
T Consensus 333 Rtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp-s~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d 408 (626)
T KOG2106|consen 333 RTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP-SKNQLLTCGQDKHVRLWN--DHKLEWTKI-IED 408 (626)
T ss_pred eEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCC-ChhheeeccCcceEEEcc--CCceeEEEE-ecC
Confidence 000 001111246777788899999 778999999999999999 445544443 457
Q ss_pred CeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCe
Q 014125 267 GVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKW 346 (430)
Q Consensus 267 ~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 346 (430)
++.++.|+|.| .++++. ..|...+.|.++.... .+ +....++++++|+|+|.+||.|+.|+.|+||-+.....
T Consensus 409 ~~~~~~fhpsg-~va~Gt-~~G~w~V~d~e~~~lv--~~---~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~ 481 (626)
T KOG2106|consen 409 PAECADFHPSG-VVAVGT-ATGRWFVLDTETQDLV--TI---HTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGR 481 (626)
T ss_pred ceeEeeccCcc-eEEEee-ccceEEEEecccceeE--EE---EecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCc
Confidence 88999999999 888888 9999999999884322 22 22378899999999999999999999999999875433
Q ss_pred -eccc-ccccCCeeEEEEcCCCcEEEEeeCCceeeecCCCc---------------------------------------
Q 014125 347 -ISGF-QAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFED--------------------------------------- 385 (430)
Q Consensus 347 -~~~~-~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~--------------------------------------- 385 (430)
.... +.+..+|+.+.|++|+++|.+-+.|-.+..|....
T Consensus 482 ~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~ 561 (626)
T KOG2106|consen 482 KYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSH 561 (626)
T ss_pred EEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhh
Confidence 3222 23447999999999999999999999999993221
Q ss_pred ----cccccCCCcEEEEeeccccc---ccccCCCCcceeeeec
Q 014125 386 ----LHLSGDENCVSVWSFLYASM---MENADGINGCEFNCQS 421 (430)
Q Consensus 386 ----l~~~~~d~~i~~w~~~~~~~---~~~~~~~~~~~~~~~~ 421 (430)
++++.+.|.|+++.+.-.+. -....+|.+ .+.++.
T Consensus 562 ~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~-~vt~V~ 603 (626)
T KOG2106|consen 562 CEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSS-HVTNVA 603 (626)
T ss_pred hhhhhhccccCceEEEEccccCCCcccceeeccccc-eeEEEE
Confidence 67777889999998764333 233445544 344443
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.8e-26 Score=196.34 Aligned_cols=292 Identities=16% Similarity=0.225 Sum_probs=200.2
Q ss_pred EEECc---CCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEE
Q 014125 66 IKWSP---DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFA 142 (430)
Q Consensus 66 ~~~sp---~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 142 (430)
..|++ ....||.+..||.|.++|....... + +.........|...|.++.|. |....|+
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr--~---------ee~~lk~~~aH~nAifDl~wa-------pge~~lV 116 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFR--L---------EERQLKKPLAHKNAIFDLKWA-------PGESLLV 116 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcc--h---------hhhhhcccccccceeEeeccC-------CCceeEE
Confidence 66765 2458999999999999998754321 0 011112345677899999994 4567899
Q ss_pred EEeCCCcEEEEeccCCceeee--eecccccccccceEEEEECCCCcEEE-E-EcCCeEEEEEcCCCCCccc---------
Q 014125 143 STTRDHPIHLWDATTGLLRCT--YRAYDAVDEITAAFSVAFNPTGTKIF-A-GYNKSVRVFDVHRPGRDFE--------- 209 (430)
Q Consensus 143 ~~~~dg~i~vwd~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~-~-~~d~~i~v~d~~~~~~~~~--------- 209 (430)
+++.|.++++||+.+++.... +.+|. ..+.+++|.|.+..++ + |.||.|.|||++.......
T Consensus 117 sasGDsT~r~Wdvk~s~l~G~~~~~GH~-----~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~ 191 (720)
T KOG0321|consen 117 SASGDSTIRPWDVKTSRLVGGRLNLGHT-----GSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYG 191 (720)
T ss_pred EccCCceeeeeeeccceeecceeecccc-----cccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhc
Confidence 999999999999999887766 44444 4899999999987666 3 4999999999986441100
Q ss_pred -------cccccc---CCCCCCCcceEE---EEEcCCCCceEEEecC-CCeEEEEEcCCceeeEE--------eecc---
Q 014125 210 -------KYSTLK---GNKEGQAGIMSA---IAFSPTHTGMLAIGSY-SQTSAIYREDNMELLYV--------LHGQ--- 264 (430)
Q Consensus 210 -------~~~~~~---~~~~~~~~~v~~---~~~~~~~~~~l~~~~~-dg~v~~~d~~~~~~~~~--------~~~~--- 264 (430)
...... .....+...|.+ +.+.. +...||+++. |+.|+|||++....... +..|
T Consensus 192 ~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fk-De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skr 270 (720)
T KOG0321|consen 192 RHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFK-DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKR 270 (720)
T ss_pred cccCCCCCCchhhccccccccccCceeeeeEEEEEe-ccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccc
Confidence 000000 011223333444 44445 5557777776 99999999997643322 2223
Q ss_pred ccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCC
Q 014125 265 EGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTG 344 (430)
Q Consensus 265 ~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 344 (430)
.-.+.++.....|.+|++.+ .|+.|++|++..........+........-..-..+|++.+|++|+.|...++|.+.+.
T Consensus 271 s~G~~nL~lDssGt~L~AsC-tD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~ 349 (720)
T KOG0321|consen 271 SVGQVNLILDSSGTYLFASC-TDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSP 349 (720)
T ss_pred eeeeEEEEecCCCCeEEEEe-cCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCc
Confidence 33678888888899999999 89999999998764332222211111122223456899999999999999999999976
Q ss_pred Ce-ecccccccCCeeEEEEcCCCc-EEEEeeCCceeeecC
Q 014125 345 KW-ISGFQAAADTVNGFSFHPFLP-MAASSSGHRRFPVDD 382 (430)
Q Consensus 345 ~~-~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~~~vw~ 382 (430)
+. ...+.+|.-.|++++|.|..- -+++++.|-+++||+
T Consensus 350 e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~ 389 (720)
T KOG0321|consen 350 EAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWR 389 (720)
T ss_pred cCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEe
Confidence 54 667789999999999998532 455556665555553
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.2e-25 Score=185.01 Aligned_cols=328 Identities=17% Similarity=0.213 Sum_probs=238.6
Q ss_pred ceeecccCCCceeEEEECcCCceEEEecCCC--------eEEEEeCCCCCCcccccccccccccCcccceeeecCCCeee
Q 014125 52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDK--------TLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVY 123 (430)
Q Consensus 52 ~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg--------~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 123 (430)
..+.+.||++.|.|++.+||.-.+++|-.-| .++|||..+-..+. +.......|.
T Consensus 96 ~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~-----------------V~g~f~~GV~ 158 (626)
T KOG2106|consen 96 SQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLH-----------------VIGFFDRGVT 158 (626)
T ss_pred hcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeee-----------------eeccccccce
Confidence 3467889999999999999988888765544 49999965432111 1112335799
Q ss_pred eeeeccccCccCCCCceEEEE--eCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEE
Q 014125 124 DFCWFPHMSASDPTSCVFAST--TRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFD 200 (430)
Q Consensus 124 ~~~~~~~~~~~~~~~~~l~~~--~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d 200 (430)
+++|++ ...|.+|... +.+..+.+||...+......+..+. .|....|+|.+..++ +...+.+.+|+
T Consensus 159 ~vaFsk-----~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne-----~v~~a~FHPtd~nliit~Gk~H~~Fw~ 228 (626)
T KOG2106|consen 159 CVAFSK-----INGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNE-----VVFLATFHPTDPNLIITCGKGHLYFWT 228 (626)
T ss_pred eeeecc-----cCCCceEEEecCCCccccchhhchhhhccCcceeccc-----eEEEEEeccCCCcEEEEeCCceEEEEE
Confidence 999977 3445565554 4456799999998877666665554 788899999987766 55889999999
Q ss_pred cCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEE
Q 014125 201 VHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYL 280 (430)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 280 (430)
.+.+.- .+....+++. ....|.|++|.+++ -+++|..+|.|.||+..+.+..+....|.+.|.+++...+|..
T Consensus 229 ~~~~~l-~k~~~~fek~---ekk~Vl~v~F~eng--dviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtl- 301 (626)
T KOG2106|consen 229 LRGGSL-VKRQGIFEKR---EKKFVLCVTFLENG--DVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTL- 301 (626)
T ss_pred ccCCce-EEEeeccccc---cceEEEEEEEcCCC--CEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccE-
Confidence 876432 2222222221 12679999999844 5899999999999999988887777799999999999999975
Q ss_pred EEEecCCCeEEEEeCCCCceE----------EEE--------------------------eecccCCccceEEEEEcCCC
Q 014125 281 YTGGRKDPYILCWDLRKAVQV----------VYK--------------------------LYRSSEHTNQRILFDIEPSG 324 (430)
Q Consensus 281 ~~~~~~d~~i~i~d~~~~~~~----------~~~--------------------------~~~~~~~~~~v~~~~~~~~~ 324 (430)
++++ .|..|..||-.-.+.. ... .....+|....+.++.+|+.
T Consensus 302 lSGg-KDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~ 380 (626)
T KOG2106|consen 302 LSGG-KDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSK 380 (626)
T ss_pred eecC-ccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCCh
Confidence 4587 9999999983211000 000 01113567788899999999
Q ss_pred CEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCCCc-------------------
Q 014125 325 RHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFED------------------- 385 (430)
Q Consensus 325 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~------------------- 385 (430)
..+++++.|+.+++|+ ..+++.+.. -..++.++.|+|.| .+|.|...|...|-|.+.
T Consensus 381 ~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ys 456 (626)
T KOG2106|consen 381 NQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYS 456 (626)
T ss_pred hheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEecCCceEEEEEc
Confidence 9999999999999999 455555444 45688899999999 899999999888875433
Q ss_pred -----cccccCCCcEEEEeeccccccc-ccCCCCcceee
Q 014125 386 -----LHLSGDENCVSVWSFLYASMME-NADGINGCEFN 418 (430)
Q Consensus 386 -----l~~~~~d~~i~~w~~~~~~~~~-~~~~~~~~~~~ 418 (430)
|+.+++|+.|++|.++.++... ...-+.+.+++
T Consensus 457 p~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~it 495 (626)
T KOG2106|consen 457 PDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPIT 495 (626)
T ss_pred CCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeE
Confidence 8888999999999998665543 33334443443
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.1e-26 Score=189.67 Aligned_cols=285 Identities=14% Similarity=0.150 Sum_probs=216.3
Q ss_pred ceEEEecC-CCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEE
Q 014125 73 SSFLTSSE-DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIH 151 (430)
Q Consensus 73 ~~l~s~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 151 (430)
.+++++.. ...+.+|.+....... ....-.++|.+++- +|+|.+|+.|+..|.|+
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~-----------------q~~v~Pg~v~al~s-------~n~G~~l~ag~i~g~lY 106 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVV-----------------QYIVLPGPVHALAS-------SNLGYFLLAGTISGNLY 106 (476)
T ss_pred hheeeecccCccccccccCchhhhh-----------------hhcccccceeeeec-------CCCceEEEeecccCcEE
Confidence 46666544 3468888876443221 12223367888877 77899999998999999
Q ss_pred EEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCCcccc-cccccCCCCCCCcceEEEE
Q 014125 152 LWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFEK-YSTLKGNKEGQAGIMSAIA 229 (430)
Q Consensus 152 vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~ 229 (430)
+|.+.+|..+..+..|-. .|+++.|+.|+.+|++ |.||.|.+|.+..--..... .......+..|.-+|+.+.
T Consensus 107 lWelssG~LL~v~~aHYQ-----~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ 181 (476)
T KOG0646|consen 107 LWELSSGILLNVLSAHYQ-----SITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQ 181 (476)
T ss_pred EEEeccccHHHHHHhhcc-----ceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEE
Confidence 999999999988877765 9999999999999995 59999999987542211111 1233445678999999999
Q ss_pred EcCC-CCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCce--------
Q 014125 230 FSPT-HTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQ-------- 300 (430)
Q Consensus 230 ~~~~-~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~-------- 300 (430)
..+. ....+++++.|.++++||+..+..+.++. ....+.+++.+|-+..+++|+ .+|.|.+.++.....
T Consensus 182 ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt-~~G~I~~~~~~~~~~~~~~v~~k 259 (476)
T KOG0646|consen 182 IGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGT-EEGKIFQNLLFKLSGQSAGVNQK 259 (476)
T ss_pred ecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecC-CcceEEeeehhcCCccccccccc
Confidence 9873 25689999999999999999998887776 567899999999999999999 999999988765431
Q ss_pred ----EEEEeecccCCcc--ceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEe-e
Q 014125 301 ----VVYKLYRSSEHTN--QRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASS-S 373 (430)
Q Consensus 301 ----~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~ 373 (430)
.........+|.+ .|+|++++-||..|++|+.||.|+|||+.+.++++++..-.++|+.+.+.|-.+....+ .
T Consensus 260 ~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~~~l~~~ 339 (476)
T KOG0646|consen 260 GRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLERGIILFEH 339 (476)
T ss_pred ccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccccceecccc
Confidence 1111222346666 99999999999999999999999999999999999998778899999997765544332 2
Q ss_pred CCceeeecCCCcccc
Q 014125 374 GHRRFPVDDFEDLHL 388 (430)
Q Consensus 374 ~d~~~~vw~~~~l~~ 388 (430)
....+..|+....++
T Consensus 340 ~~ps~~~~~lkr~i~ 354 (476)
T KOG0646|consen 340 KQPSLPNPHLKRMIP 354 (476)
T ss_pred cCccCCchHhhccCC
Confidence 233444554444333
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-24 Score=191.71 Aligned_cols=308 Identities=16% Similarity=0.243 Sum_probs=235.2
Q ss_pred CceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEE
Q 014125 72 GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIH 151 (430)
Q Consensus 72 ~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 151 (430)
|.+++++..++.+.||+..+.+....+. .......+ ..|.++.- | +.-=+.++.|+..|.++
T Consensus 124 Ge~lia~d~~~~l~vw~~s~~~~e~~l~-----------~~~~~~~~-~~Ital~H-P-----~TYLNKIvvGs~~G~lq 185 (910)
T KOG1539|consen 124 GEHLIAVDISNILFVWKTSSIQEELYLQ-----------STFLKVEG-DFITALLH-P-----STYLNKIVVGSSQGRLQ 185 (910)
T ss_pred cceEEEEEccCcEEEEEecccccccccc-----------ceeeeccC-CceeeEec-c-----hhheeeEEEeecCCcEE
Confidence 5667777778888888877541110000 01111122 22666652 2 22236799999999999
Q ss_pred EEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEE
Q 014125 152 LWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAF 230 (430)
Q Consensus 152 vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 230 (430)
+|++.+++.+.+++.... .|+++.-+|-=..++.| .+|+|.+++++.... ...+....+.|++++|
T Consensus 186 l~Nvrt~K~v~~f~~~~s-----~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dki--------l~sFk~d~g~VtslSF 252 (910)
T KOG1539|consen 186 LWNVRTGKVVYTFQEFFS-----RITAIEQSPALDVVAIGLENGTVIIFNLKFDKI--------LMSFKQDWGRVTSLSF 252 (910)
T ss_pred EEEeccCcEEEEeccccc-----ceeEeccCCcceEEEEeccCceEEEEEcccCcE--------EEEEEccccceeEEEe
Confidence 999999999999998876 89999999998899977 899999999987422 1112223578999999
Q ss_pred cCCCCceEEEecCCCeEEEEEcCCceeeEEee-ccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCce---------
Q 014125 231 SPTHTGMLAIGSYSQTSAIYREDNMELLYVLH-GQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQ--------- 300 (430)
Q Consensus 231 ~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~--------- 300 (430)
.-||..++++|+..|.+.+||++..+....+. .|.+.|....|.|....+++++ .|+.+++|=..++..
T Consensus 253 rtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~-~DnSlk~~vfD~~dg~pR~LR~R~ 331 (910)
T KOG1539|consen 253 RTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAG-ADNSLKVWVFDSGDGVPRLLRSRG 331 (910)
T ss_pred ccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeecc-CCCceeEEEeeCCCCcchheeecc
Confidence 99999999999999999999999888776665 7889999999999888888888 888887773321000
Q ss_pred -----------------E------------------------------------------------E-------------
Q 014125 301 -----------------V------------------------------------------------V------------- 302 (430)
Q Consensus 301 -----------------~------------------------------------------------~------------- 302 (430)
. .
T Consensus 332 GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W 411 (910)
T KOG1539|consen 332 GHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEW 411 (910)
T ss_pred CCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhh
Confidence 0 0
Q ss_pred -------------EE------------e--ecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccc---cc
Q 014125 303 -------------YK------------L--YRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGF---QA 352 (430)
Q Consensus 303 -------------~~------------~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~---~~ 352 (430)
.. + .........+++++.++.|++.+.|...|.|-+|++.+|-....+ +.
T Consensus 412 ~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~a 491 (910)
T KOG1539|consen 412 DNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPA 491 (910)
T ss_pred cceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCcc
Confidence 00 0 000012256788999999999999999999999999999888888 58
Q ss_pred ccCCeeEEEEcCCCcEEEEeeCCceeeecCCCc-----------------------------------------------
Q 014125 353 AADTVNGFSFHPFLPMAASSSGHRRFPVDDFED----------------------------------------------- 385 (430)
Q Consensus 353 ~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~----------------------------------------------- 385 (430)
|.++|++++....++.+++++.+|.+.+|+...
T Consensus 492 h~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~ 571 (910)
T KOG1539|consen 492 HKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVRE 571 (910)
T ss_pred ccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHH
Confidence 999999999999999999999999999996543
Q ss_pred -------------------cccccCCCcEEEEeecccccccccCC
Q 014125 386 -------------------LHLSGDENCVSVWSFLYASMMENADG 411 (430)
Q Consensus 386 -------------------l~~~~~d~~i~~w~~~~~~~~~~~~~ 411 (430)
|++++.|++||+||+.++.++..+.-
T Consensus 572 f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~v 616 (910)
T KOG1539|consen 572 FWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLV 616 (910)
T ss_pred hhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEec
Confidence 88889999999999999888776644
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.7e-25 Score=173.87 Aligned_cols=237 Identities=19% Similarity=0.279 Sum_probs=189.2
Q ss_pred CCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEE
Q 014125 119 GESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRV 198 (430)
Q Consensus 119 ~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v 198 (430)
...|.++.| +|.++.|++++.||++++||.........++.. .++.+++|.++.+.+.++.||.|+.
T Consensus 13 ~d~IS~v~f-------~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~------~plL~c~F~d~~~~~~G~~dg~vr~ 79 (323)
T KOG1036|consen 13 EDGISSVKF-------SPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHG------APLLDCAFADESTIVTGGLDGQVRR 79 (323)
T ss_pred hhceeeEEE-------cCcCCcEEEEeccCcEEEEeccchhhhhheecC------CceeeeeccCCceEEEeccCceEEE
Confidence 367999999 567788999999999999999888655555433 3999999998777777889999999
Q ss_pred EEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCC
Q 014125 199 FDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGN 278 (430)
Q Consensus 199 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~ 278 (430)
+|+.++.. .....|..+++++.+.+ ..+.+++|+.|++|++||.+.......+. ....|.++.. .|.
T Consensus 80 ~Dln~~~~---------~~igth~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v--~g~ 146 (323)
T KOG1036|consen 80 YDLNTGNE---------DQIGTHDEGIRCIEYSY-EVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDV--SGN 146 (323)
T ss_pred EEecCCcc---------eeeccCCCceEEEEeec-cCCeEEEcccCccEEEEeccccccccccc-cCceEEEEec--cCC
Confidence 99987432 12357888999999998 77899999999999999999765555555 3447888876 567
Q ss_pred EEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCC----Ceeccccccc
Q 014125 279 YLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTG----KWISGFQAAA 354 (430)
Q Consensus 279 ~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~~~ 354 (430)
.|++++ .|..+.+||+++...... .....-.-.+.++++-|++.-.++++-||+|.+=.++.. +....|+.|.
T Consensus 147 ~LvVg~-~~r~v~iyDLRn~~~~~q--~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr 223 (323)
T KOG1036|consen 147 RLVVGT-SDRKVLIYDLRNLDEPFQ--RRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHR 223 (323)
T ss_pred EEEEee-cCceEEEEEcccccchhh--hccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeee
Confidence 899988 899999999998765431 222345567889999998888999999999998777765 3345566664
Q ss_pred C---------CeeEEEEcCCCcEEEEeeCCceeeecCCC
Q 014125 355 D---------TVNGFSFHPFLPMAASSSGHRRFPVDDFE 384 (430)
Q Consensus 355 ~---------~v~~~~~~~~~~~l~s~~~d~~~~vw~~~ 384 (430)
. +|++|+|+|-...|+||+.||.|.+||..
T Consensus 224 ~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~ 262 (323)
T KOG1036|consen 224 LSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLF 262 (323)
T ss_pred cccCCceEEEEeceeEeccccceEEecCCCceEEEccCc
Confidence 3 79999999999999999988888888654
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.7e-25 Score=175.34 Aligned_cols=278 Identities=15% Similarity=0.160 Sum_probs=199.3
Q ss_pred eeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCcee--eeeecccccccccceEEEEECCCCcEEEEE
Q 014125 114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLR--CTYRAYDAVDEITAAFSVAFNPTGTKIFAG 191 (430)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 191 (430)
...+|++.|++++| +.||+.|++++.|++|++|++..-... +.++..- .-...+.+.|.||-+-++.+
T Consensus 81 ~LKgH~~~vt~~~F-------sSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv---e~dhpT~V~FapDc~s~vv~ 150 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAF-------SSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV---EYDHPTRVVFAPDCKSVVVS 150 (420)
T ss_pred hhhccCCceeeeEE-------cCCCceeEEEeCCceEEEEecchhhhhhhhHhhccc---cCCCceEEEECCCcceEEEE
Confidence 44568899999999 889999999999999999998763211 1111111 11245689999999877733
Q ss_pred --cCCeEEEEEcCCCCCccccc-cccc---CCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccc
Q 014125 192 --YNKSVRVFDVHRPGRDFEKY-STLK---GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE 265 (430)
Q Consensus 192 --~d~~i~v~d~~~~~~~~~~~-~~~~---~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~ 265 (430)
...++++|.+.......-.. .... .....|...+..+-... +..++++++.|..|.+|+++ |+.+..+....
T Consensus 151 ~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq 228 (420)
T KOG2096|consen 151 VKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG-NAKYIMSASLDTKICLWDLK-GQLLQSIDTNQ 228 (420)
T ss_pred EccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecC-CceEEEEecCCCcEEEEecC-Cceeeeecccc
Confidence 77899999876432211000 0001 11234555566666655 78899999999999999998 88888888777
Q ss_pred cCeEEEEEccCCCEEEEEecCCCeEEEEeCCCC----ceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEc
Q 014125 266 GGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKA----VQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDL 341 (430)
Q Consensus 266 ~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 341 (430)
..-+..+.||+|+++++++ .-..|++|..--. .+...+.+...+|.+.|..++|+++.+.+++.+.||.++|||+
T Consensus 229 ~~n~~aavSP~GRFia~~g-FTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdt 307 (420)
T KOG2096|consen 229 SSNYDAAVSPDGRFIAVSG-FTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDT 307 (420)
T ss_pred ccccceeeCCCCcEEEEec-CCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeec
Confidence 7788899999999999999 8899999986322 1223344556899999999999999999999999999999998
Q ss_pred CC-------CCeecccc----cccCCeeEEEEcCCCcEEEEeeCCceeeecCCCccccccCCCcEEEEeecccccccccC
Q 014125 342 QT-------GKWISGFQ----AAADTVNGFSFHPFLPMAASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYASMMENAD 410 (430)
Q Consensus 342 ~~-------~~~~~~~~----~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~~~~~~~ 410 (430)
+- .+.+++.. ...+....++.+|+|+.||.+. ...++++.-+.++....+.
T Consensus 308 dVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~------------------gs~l~~~~se~g~~~~~~e 369 (420)
T KOG2096|consen 308 DVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF------------------GSDLKVFASEDGKDYPELE 369 (420)
T ss_pred cceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec------------------CCceEEEEcccCccchhHH
Confidence 62 22233321 1222345899999999999875 3567777777777776666
Q ss_pred CCCcceeeeecc
Q 014125 411 GINGCEFNCQSE 422 (430)
Q Consensus 411 ~~~~~~~~~~~~ 422 (430)
.+.+..+.|+..
T Consensus 370 ~~h~~~Is~is~ 381 (420)
T KOG2096|consen 370 DIHSTTISSISY 381 (420)
T ss_pred HhhcCceeeEEe
Confidence 655545555543
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-25 Score=184.64 Aligned_cols=264 Identities=16% Similarity=0.276 Sum_probs=189.7
Q ss_pred eEEEECc-------CCceEEEecCCCeEEEEeCCCCCCcccccccc-ccc---ccCcccceeeecCCCeeeeeeeccccC
Q 014125 64 KGIKWSP-------DGSSFLTSSEDKTLRIFSLPENGISYDVNACS-LAK---DQDSYEASLVVTEGESVYDFCWFPHMS 132 (430)
Q Consensus 64 ~~~~~sp-------~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~ 132 (430)
.|+.|.. .|+|+|.|+.|..|.|||+.-..........- ... ...........+|...|.+++|+..
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~-- 254 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRN-- 254 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccc--
Confidence 4666633 36899999999999999987432221111000 000 0001111123357778889998543
Q ss_pred ccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCc-EEEE-EcCCeEEEEEcCCCCCcccc
Q 014125 133 ASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGT-KIFA-GYNKSVRVFDVHRPGRDFEK 210 (430)
Q Consensus 133 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~-~~d~~i~v~d~~~~~~~~~~ 210 (430)
-.+.||+||.|.+|++||+.++++...+..+.. .|.++.|+|... +|++ +.|++|.+.|.+.++.....
T Consensus 255 ----~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k-----~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~ 325 (463)
T KOG0270|consen 255 ----FRNVLASGSADKTVKLWDVDTGKPKSSITHHGK-----KVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKE 325 (463)
T ss_pred ----cceeEEecCCCceEEEEEcCCCCcceehhhcCC-----ceeEEEecCCCceEEEeccccceEEeeeccCccccCce
Confidence 346899999999999999999999999987665 999999999874 4444 48999999999864332211
Q ss_pred cccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCc-eeeEEeeccccCeEEEEEccCCCEEEEEecCCCe
Q 014125 211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-ELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPY 289 (430)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~ 289 (430)
. .-.+.|-.++|.|.....+++++.||+|+-+|+|.. +++.+++.|.++|.+|++++.-..+++.++.|+.
T Consensus 326 w--------k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~ 397 (463)
T KOG0270|consen 326 W--------KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKV 397 (463)
T ss_pred E--------EeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccce
Confidence 1 123568999999988999999999999999999986 8999999999999999999877665555559999
Q ss_pred EEEEeCCCCceEEEEeecccCCccceEEEEEcCCC-CEEEEEccCCcEEEEEcCCCCeec
Q 014125 290 ILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSG-RHLGTGGQDGLVHIYDLQTGKWIS 348 (430)
Q Consensus 290 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~ 348 (430)
|++|++........... ...-+...|+++.|+- -.++.|+..+.++|||+.+...+.
T Consensus 398 Vklw~~~~~~~~~v~~~--~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 398 VKLWKFDVDSPKSVKEH--SFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVR 455 (463)
T ss_pred EEEEeecCCCCcccccc--cccccceeecccCCCcceEEEecCccceEEEeecccChhHH
Confidence 99999976543211111 1112235667777765 457888888899999998876543
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-25 Score=192.46 Aligned_cols=140 Identities=18% Similarity=0.165 Sum_probs=112.3
Q ss_pred cCCCeEEEEEcCCcee-----eEEeeccccCeEEEEEcc-CCCEEEEEecCCCeEEEEeCCCCceEE---EEeecccCCc
Q 014125 242 SYSQTSAIYREDNMEL-----LYVLHGQEGGVTHVQFSR-DGNYLYTGGRKDPYILCWDLRKAVQVV---YKLYRSSEHT 312 (430)
Q Consensus 242 ~~dg~v~~~d~~~~~~-----~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~d~~i~i~d~~~~~~~~---~~~~~~~~~~ 312 (430)
+..|.|-||+++.... +-.+. ....|+.+.|+| |...|++++ .||.|++|.+..+.... ........|.
T Consensus 600 g~gG~iai~el~~PGrLPDgv~p~l~-Ngt~vtDl~WdPFD~~rLAVa~-ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~ 677 (1012)
T KOG1445|consen 600 GSGGVIAIYELNEPGRLPDGVMPGLF-NGTLVTDLHWDPFDDERLAVAT-DDGQINLWRLTANGLPENEMTPEKILTIHG 677 (1012)
T ss_pred CCCceEEEEEcCCCCCCCcccccccc-cCceeeecccCCCChHHeeecc-cCceEEEEEeccCCCCcccCCcceeeeccc
Confidence 4568888998875322 11121 345799999999 566899999 99999999987543211 1111225788
Q ss_pred cceEEEEEcCC-CCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCC
Q 014125 313 NQRILFDIEPS-GRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 313 ~~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~ 383 (430)
..|+++.|+|- ...|++++.|.+|++||+.+++....+.+|.+.|.+++|+|+|+.+|+.+.||+++|+..
T Consensus 678 eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~P 749 (1012)
T KOG1445|consen 678 EKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEP 749 (1012)
T ss_pred ceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCC
Confidence 99999999995 468999999999999999999999999999999999999999999999999999999943
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-23 Score=184.08 Aligned_cols=263 Identities=13% Similarity=0.136 Sum_probs=183.6
Q ss_pred ecccCCCceeEEEECcCCceE-EEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCc
Q 014125 55 TSSIPNNFLKGIKWSPDGSSF-LTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (430)
Q Consensus 55 ~~~~h~~~v~~~~~sp~~~~l-~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (430)
.+.+|. .+.+++|+|+|+.+ ++++.++.|++||..+++....+ .....+..++|
T Consensus 26 ~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~------------------~~~~~~~~~~~------ 80 (300)
T TIGR03866 26 TFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTL------------------PSGPDPELFAL------ 80 (300)
T ss_pred EEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEec------------------cCCCCccEEEE------
Confidence 334443 36789999999876 56778999999999876432111 11122445667
Q ss_pred cCCCCceEEE-EeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cC-CeEEEEEcCCCCCcccc
Q 014125 134 SDPTSCVFAS-TTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN-KSVRVFDVHRPGRDFEK 210 (430)
Q Consensus 134 ~~~~~~~l~~-~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d-~~i~v~d~~~~~~~~~~ 210 (430)
+|+++.+++ ++.++.+++||+.+++.+..+.... .+.+++|+|++.+++++ .+ ..+.+||...... .
T Consensus 81 -~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~------~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~-~-- 150 (300)
T TIGR03866 81 -HPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGV------EPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEI-V-- 150 (300)
T ss_pred -CCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCC------CcceEEECCCCCEEEEEecCCCeEEEEeCCCCeE-E--
Confidence 677876655 4568999999999887766665322 45689999999999865 43 4577788765311 0
Q ss_pred cccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccc-----c--CeEEEEEccCCCEEEEE
Q 014125 211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE-----G--GVTHVQFSRDGNYLYTG 283 (430)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~-----~--~i~~~~~~~~~~~l~~~ 283 (430)
... ........++|+|++..+++++..++.|++||+++++.+..+..+. . ....++|+|++++++++
T Consensus 151 -~~~-----~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~ 224 (300)
T TIGR03866 151 -DNV-----LVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVA 224 (300)
T ss_pred -EEE-----EcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEE
Confidence 011 0112356789999655444666679999999999988766654221 1 23568899999987665
Q ss_pred ecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEE-ccCCcEEEEEcCCCCeecccccccCCeeEEEE
Q 014125 284 GRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTG-GQDGLVHIYDLQTGKWISGFQAAADTVNGFSF 362 (430)
Q Consensus 284 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 362 (430)
...++.+.+||+++.+... .. .+...+.+++|+|+|++|+++ +.+|.|.+||+.+++.+..++.. ...+++++
T Consensus 225 ~~~~~~i~v~d~~~~~~~~-~~----~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~ 298 (300)
T TIGR03866 225 LGPANRVAVVDAKTYEVLD-YL----LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVV 298 (300)
T ss_pred cCCCCeEEEEECCCCcEEE-EE----EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEe
Confidence 4367789999998764332 22 123468899999999999876 46899999999999999988754 55588888
Q ss_pred cC
Q 014125 363 HP 364 (430)
Q Consensus 363 ~~ 364 (430)
+|
T Consensus 299 ~~ 300 (300)
T TIGR03866 299 RP 300 (300)
T ss_pred CC
Confidence 75
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.5e-26 Score=201.14 Aligned_cols=247 Identities=16% Similarity=0.231 Sum_probs=189.7
Q ss_pred eeEEEECc-CCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceE
Q 014125 63 LKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF 141 (430)
Q Consensus 63 v~~~~~sp-~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 141 (430)
+..+.|+. +.++|||++..|.|.+||+.... +......+-.|...+.++.|++. ..++|
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~--------------rnk~l~~f~EH~Rs~~~ldfh~t------ep~il 149 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSI--------------RNKLLTVFNEHERSANKLDFHST------EPNIL 149 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccc--------------cchhhhHhhhhccceeeeeeccC------CccEE
Confidence 55677875 57899999999999999997521 11122244557789999999765 45699
Q ss_pred EEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCC-cEEEEE-cCCeEEEEEcCCCCCcccccccccCCCC
Q 014125 142 ASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG-TKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKE 219 (430)
Q Consensus 142 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~ 219 (430)
++|+.||.|++||++..+...++..... .|..+.|+|.. ..++++ ..|.+.+||++.+.. ....+.
T Consensus 150 iSGSQDg~vK~~DlR~~~S~~t~~~nSE-----SiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r-------~~~k~~ 217 (839)
T KOG0269|consen 150 ISGSQDGTVKCWDLRSKKSKSTFRSNSE-----SIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDR-------CEKKLT 217 (839)
T ss_pred EecCCCceEEEEeeecccccccccccch-----hhhceeeccCCCceEEEecCCceEEEeeccCchh-------HHHHhh
Confidence 9999999999999999988888777544 89999999865 444444 789999999998644 333347
Q ss_pred CCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeec-cccCeEEEEEccCCCEEEEEec--CCCeEEEEeCC
Q 014125 220 GQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG-QEGGVTHVQFSRDGNYLYTGGR--KDPYILCWDLR 296 (430)
Q Consensus 220 ~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~--~d~~i~i~d~~ 296 (430)
.|.++|.|+.|+| ++.+||+|+.|+.|+|||+.+.+......- ...++.+++|-|...+.++.++ .|-.|+|||++
T Consensus 218 AH~GpV~c~nwhP-nr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvr 296 (839)
T KOG0269|consen 218 AHNGPVLCLNWHP-NREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVR 296 (839)
T ss_pred cccCceEEEeecC-CCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeec
Confidence 8999999999999 888999999999999999987654333222 3468999999998776554432 57789999999
Q ss_pred CCceEEEEeecccCCccceEEEEEcC-CCCEEEEEccCCcEEEEEcCCCC
Q 014125 297 KAVQVVYKLYRSSEHTNQRILFDIEP-SGRHLGTGGQDGLVHIYDLQTGK 345 (430)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~ 345 (430)
.+.-+.. ....|...++.++|.. |...+.+++.||.|..-..++..
T Consensus 297 RPYIP~~---t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat 343 (839)
T KOG0269|consen 297 RPYIPYA---TFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNAT 343 (839)
T ss_pred cccccce---eeeccCccccceeccCCCceeeEeecCccHHHHhhhhccc
Confidence 7644433 3367899999999965 34578899999988766665543
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-24 Score=170.63 Aligned_cols=254 Identities=15% Similarity=0.247 Sum_probs=185.5
Q ss_pred eeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCC----ceeeeeecccccccccceEEEEECCC--CcE
Q 014125 114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTG----LLRCTYRAYDAVDEITAAFSVAFNPT--GTK 187 (430)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~ 187 (430)
+...|..-|.++.| .+.|+.+|+|+.|++|+|||.... .+....+.|.. .|..+.|.+. |+.
T Consensus 8 i~s~h~DlihdVs~-------D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~-----Si~rV~WAhPEfGqv 75 (361)
T KOG2445|consen 8 IDSGHKDLIHDVSF-------DFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDG-----SIWRVVWAHPEFGQV 75 (361)
T ss_pred cccCCcceeeeeee-------cccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCC-----cEEEEEecCccccce
Confidence 44456678999999 678999999999999999997544 23445555555 8999999654 678
Q ss_pred EE-EEcCCeEEEEEcCCCCCcccc-cccccCCCCCCCcceEEEEEcCCC-CceEEEecCCCeEEEEEcCCc------eee
Q 014125 188 IF-AGYNKSVRVFDVHRPGRDFEK-YSTLKGNKEGQAGIMSAIAFSPTH-TGMLAIGSYSQTSAIYREDNM------ELL 258 (430)
Q Consensus 188 l~-~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~~~d~~~~------~~~ 258 (430)
++ ++.|+++.||.-......... .-.....+......|+.+.|.|.. +-.+|+++.||.++||+.... ...
T Consensus 76 vA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq 155 (361)
T KOG2445|consen 76 VATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQ 155 (361)
T ss_pred EEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhh
Confidence 88 569999999986421111100 001112234456789999999954 557899999999999986543 222
Q ss_pred EEee-------ccccCeEEEEEccC---CCEEEEEecCC-----CeEEEEeCCCCceEEEEeecccCCccceEEEEEcCC
Q 014125 259 YVLH-------GQEGGVTHVQFSRD---GNYLYTGGRKD-----PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPS 323 (430)
Q Consensus 259 ~~~~-------~~~~~i~~~~~~~~---~~~l~~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 323 (430)
..++ .+..+..|+.|+|. ..+|++++ .+ +.+.||................+|..+|+.++|.|+
T Consensus 156 ~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs-~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn 234 (361)
T KOG2445|consen 156 HEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGS-DEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPN 234 (361)
T ss_pred hhhhhccCCcccccCcceEEeeccccccCceEEEEc-ccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccc
Confidence 2222 35567889999974 45777776 44 489999988776566666666799999999999997
Q ss_pred -C---CEEEEEccCCcEEEEEcCCC--------------------CeecccccccCCeeEEEEcCCCcEEEEeeCCceee
Q 014125 324 -G---RHLGTGGQDGLVHIYDLQTG--------------------KWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFP 379 (430)
Q Consensus 324 -~---~~l~~~~~dg~i~vwd~~~~--------------------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~ 379 (430)
| ..||+++.|| |+||.+... +.+..+..|.+.|..+.|+-.|..|++.+.||.++
T Consensus 235 ~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VR 313 (361)
T KOG2445|consen 235 IGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVR 313 (361)
T ss_pred cCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceee
Confidence 2 4699999999 999998731 23455678999999999999999998887655555
Q ss_pred ec
Q 014125 380 VD 381 (430)
Q Consensus 380 vw 381 (430)
+|
T Consensus 314 LW 315 (361)
T KOG2445|consen 314 LW 315 (361)
T ss_pred eh
Confidence 55
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-24 Score=178.28 Aligned_cols=307 Identities=12% Similarity=0.130 Sum_probs=228.6
Q ss_pred eecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCc
Q 014125 54 RTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (430)
Q Consensus 54 ~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (430)
+.+.+|.+.|++|.||.++++||+|+.|..+++|+++..-.. .....+....-+|...|.+++|
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~----------k~~KPI~~~~~~H~SNIF~L~F------ 113 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVR----------KTPKPIGVMEHPHRSNIFSLEF------ 113 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhh----------cCCCCceeccCccccceEEEEE------
Confidence 467899999999999999999999999999999998742110 0111222233456678999999
Q ss_pred cCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCcccccc
Q 014125 134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYS 212 (430)
Q Consensus 134 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~ 212 (430)
......+++|..+++|...|+++.+.+..+.... ..+.|+.+..+|....++ ++.++.|.+||++........+.
T Consensus 114 -~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~---~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~ 189 (609)
T KOG4227|consen 114 -DLENRFLYSGERWGTVIKHDIETKQSIYVANENN---NRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVL 189 (609)
T ss_pred -ccCCeeEecCCCcceeEeeecccceeeeeecccC---cccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceee
Confidence 6677899999999999999999988776665433 334899999999887777 56899999999987543332221
Q ss_pred cccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCcee-eEE------eeccccCeEEEEEccCCCEEEEEec
Q 014125 213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL-LYV------LHGQEGGVTHVQFSRDGNYLYTGGR 285 (430)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~-~~~------~~~~~~~i~~~~~~~~~~~l~~~~~ 285 (430)
. .........+.|+|....+|++.+..+-+-+||.+.... +.. +......-.++.|+|+|..+++.-
T Consensus 190 ~-----AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiR- 263 (609)
T KOG4227|consen 190 P-----ANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIR- 263 (609)
T ss_pred e-----cCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhh-
Confidence 1 233456788999998899999999999999999886432 211 221222347889999999999887
Q ss_pred CCCeEEEEeCCCCceEEEEeeccc---CCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCC------------------
Q 014125 286 KDPYILCWDLRKAVQVVYKLYRSS---EHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTG------------------ 344 (430)
Q Consensus 286 ~d~~i~i~d~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~------------------ 344 (430)
....-.+||+-.....+.+..... .....+.+++|-.+ .-+++|+.+-.|++|.+...
T Consensus 264 R~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D-~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~ 342 (609)
T KOG4227|consen 264 RGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDD-YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPS 342 (609)
T ss_pred ccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecc-eeeeccCcccceEEEecCCCccccCccccCcchhhCch
Confidence 666777889887655544432111 12345667888755 34999999999999998531
Q ss_pred -----CeecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCCCccc
Q 014125 345 -----KWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFEDLH 387 (430)
Q Consensus 345 -----~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~l~ 387 (430)
+.+..+++|.+-+..+.|+|...+|++++..+.+++|....+.
T Consensus 343 ~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~r~P 390 (609)
T KOG4227|consen 343 EIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDHRLP 390 (609)
T ss_pred hheecceeEEEecccccccceeecCCcceEeccchhhheeccccccCC
Confidence 2244678999999999999999999999999999999665544
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-23 Score=181.30 Aligned_cols=284 Identities=18% Similarity=0.200 Sum_probs=223.1
Q ss_pred ecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCcc
Q 014125 55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS 134 (430)
Q Consensus 55 ~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 134 (430)
.+.--..+|++++|+.+.+.||.+-.||.|.||++..+ ......+..+....|.+++|.
T Consensus 20 f~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~---------------w~~~~vi~g~~drsIE~L~W~------ 78 (691)
T KOG2048|consen 20 FVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNN---------------WFLEPVIHGPEDRSIESLAWA------ 78 (691)
T ss_pred EEeeeccceEEEEEeccCCceeeeccCCcEEEEccCCC---------------ceeeEEEecCCCCceeeEEEc------
Confidence 33444567999999999999999999999999999753 122233444566789999994
Q ss_pred CCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCccccccc
Q 014125 135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYST 213 (430)
Q Consensus 135 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~ 213 (430)
++..|.+.+.+|.|.-||+.+++....+..... .|++++.+|.+..++.| .||.+..++...+.- +
T Consensus 79 --e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg-----~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I------~ 145 (691)
T KOG2048|consen 79 --EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGG-----AIWSIAINPENTILAIGCDDGVLYDFSIGPDKI------T 145 (691)
T ss_pred --cCCeEEeecCCceEEEEecccCceeEEecCCCc-----ceeEEEeCCccceEEeecCCceEEEEecCCceE------E
Confidence 467899999999999999999999888887776 99999999999999966 889777776654221 1
Q ss_pred ccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEee--------ccccCeEEEEEccCCCEEEEEec
Q 014125 214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH--------GQEGGVTHVQFSRDGNYLYTGGR 285 (430)
Q Consensus 214 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~--------~~~~~i~~~~~~~~~~~l~~~~~ 285 (430)
....+....+.+.+++|+| .+..++.|+.||.|++||..++..+.... ....-|.++.|-.++ .|++|.
T Consensus 146 ~~r~l~rq~sRvLslsw~~-~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgD- 222 (691)
T KOG2048|consen 146 YKRSLMRQKSRVLSLSWNP-TGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGD- 222 (691)
T ss_pred EEeecccccceEEEEEecC-CccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEec-
Confidence 2222334467899999999 66689999999999999999987665221 122347788887665 578888
Q ss_pred CCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCe----ecccccccCCeeEEE
Q 014125 286 KDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKW----ISGFQAAADTVNGFS 361 (430)
Q Consensus 286 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~----~~~~~~~~~~v~~~~ 361 (430)
..|+|.+||...+... .....|...|.+++..+++.++++++.|+.|.-|...+.+. ......|...|.+++
T Consensus 223 S~G~V~FWd~~~gTLi----qS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~a 298 (691)
T KOG2048|consen 223 SAGTVTFWDSIFGTLI----QSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMA 298 (691)
T ss_pred CCceEEEEcccCcchh----hhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeee
Confidence 8999999999887432 33367889999999999999999999999999998876543 233456888999999
Q ss_pred EcCCCcEEEEeeCCceeeec
Q 014125 362 FHPFLPMAASSSGHRRFPVD 381 (430)
Q Consensus 362 ~~~~~~~l~s~~~d~~~~vw 381 (430)
..++ .|++|+.|..+.+-
T Consensus 299 v~~~--~l~sgG~d~~l~i~ 316 (691)
T KOG2048|consen 299 VIEN--ALISGGRDFTLAIC 316 (691)
T ss_pred eecc--eEEecceeeEEEEc
Confidence 8876 89999999998886
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-24 Score=180.79 Aligned_cols=225 Identities=15% Similarity=0.197 Sum_probs=177.2
Q ss_pred ceEEEEe-CCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccccccccC
Q 014125 139 CVFASTT-RDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKG 216 (430)
Q Consensus 139 ~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~ 216 (430)
.+++++. .-..+.+|.+........... .++++.+++-+|.|.++++| -.+.|++|.+.++ .+..
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~q~~v-----~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG--------~LL~ 117 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVVQYIV-----LPGPVHALASSNLGYFLLAGTISGNLYLWELSSG--------ILLN 117 (476)
T ss_pred hheeeecccCccccccccCchhhhhhhcc-----cccceeeeecCCCceEEEeecccCcEEEEEeccc--------cHHH
Confidence 3555554 345799999876544432111 22379999999999999987 8999999999884 3333
Q ss_pred CCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcC---------CceeeEEeeccccCeEEEEEccC--CCEEEEEec
Q 014125 217 NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED---------NMELLYVLHGQEGGVTHVQFSRD--GNYLYTGGR 285 (430)
Q Consensus 217 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~---------~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~ 285 (430)
...+|-..|+++.|+- ++.+|++|+.||.|.+|++. +-++...+..|.-+|+.+...+. ..+|++++
T Consensus 118 v~~aHYQ~ITcL~fs~-dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS- 195 (476)
T KOG0646|consen 118 VLSAHYQSITCLKFSD-DGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTAS- 195 (476)
T ss_pred HHHhhccceeEEEEeC-CCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEec-
Confidence 3467888899999999 67799999999999999853 33678889999999999998765 35899999
Q ss_pred CCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCC----------------Ceecc
Q 014125 286 KDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTG----------------KWISG 349 (430)
Q Consensus 286 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~----------------~~~~~ 349 (430)
.|.++++||+..+...... .....+.+++.+|.++.+++|+++|.|.+.++... ..+..
T Consensus 196 ~D~t~k~wdlS~g~LLlti-----~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~ 270 (476)
T KOG0646|consen 196 EDRTIKLWDLSLGVLLLTI-----TFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINV 270 (476)
T ss_pred CCceEEEEEeccceeeEEE-----ecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeee
Confidence 9999999999988443322 34677899999999999999999999999887532 23556
Q ss_pred cccccC--CeeEEEEcCCCcEEEEeeCCceeeecCC
Q 014125 350 FQAAAD--TVNGFSFHPFLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 350 ~~~~~~--~v~~~~~~~~~~~l~s~~~d~~~~vw~~ 383 (430)
+.+|.+ .|++++.+-||.+|++|+.||.++|||.
T Consensus 271 ~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi 306 (476)
T KOG0646|consen 271 LVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDI 306 (476)
T ss_pred eccccCCcceeEEEEecCccEEEeeCCCCCEEEEec
Confidence 778888 9999999999999999987666666543
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-26 Score=203.23 Aligned_cols=221 Identities=19% Similarity=0.295 Sum_probs=193.2
Q ss_pred CCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCccccccccc
Q 014125 137 TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLK 215 (430)
Q Consensus 137 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~ 215 (430)
.++.+++|+.|-.+-+|.+..-..+..+..|.. +|.++.|+++..+|++| .+|+|++||+... ...
T Consensus 39 s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hes-----pIeSl~f~~~E~LlaagsasgtiK~wDleeA--------k~v 105 (825)
T KOG0267|consen 39 SSRSLVTGGEDEKVNLWAIGKPNAITSLTGHES-----PIESLTFDTSERLLAAGSASGTIKVWDLEEA--------KIV 105 (825)
T ss_pred cceeeccCCCceeeccccccCCchhheeeccCC-----cceeeecCcchhhhcccccCCceeeeehhhh--------hhh
Confidence 456899999999999999887776666777766 99999999999999866 8999999999863 222
Q ss_pred CCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeC
Q 014125 216 GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDL 295 (430)
Q Consensus 216 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~ 295 (430)
..+.+|...+.++.|+| -+.+++.|+.|+.+++||.+...+.+.+.+|...+..+.|+|+|++++.++ .|..+++||+
T Consensus 106 rtLtgh~~~~~sv~f~P-~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~-ed~tvki~d~ 183 (825)
T KOG0267|consen 106 RTLTGHLLNITSVDFHP-YGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGG-EDNTVKIWDL 183 (825)
T ss_pred hhhhccccCcceeeecc-ceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccC-Ccceeeeecc
Confidence 34578889999999999 666889999999999999999999999999999999999999999999999 8999999999
Q ss_pred CCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCC
Q 014125 296 RKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGH 375 (430)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 375 (430)
..++-. ..+..|...+.++.|+|..-++++|+.|++|++||+++.+.+.........|.+.+|+|++..+.+|...
T Consensus 184 ~agk~~----~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 184 TAGKLS----KEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred cccccc----cccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchh
Confidence 877422 3336788999999999999999999999999999999999988888888899999999999999888654
Q ss_pred c
Q 014125 376 R 376 (430)
Q Consensus 376 ~ 376 (430)
.
T Consensus 260 s 260 (825)
T KOG0267|consen 260 S 260 (825)
T ss_pred h
Confidence 3
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.3e-25 Score=178.13 Aligned_cols=260 Identities=16% Similarity=0.243 Sum_probs=183.1
Q ss_pred ecccCCCceeEEEECcCC--ceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccC
Q 014125 55 TSSIPNNFLKGIKWSPDG--SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS 132 (430)
Q Consensus 55 ~~~~h~~~v~~~~~sp~~--~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 132 (430)
...+|.+.++-+.-++-+ .+.|+-+..|.|+||++... +.++.
T Consensus 146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~-----------------------------l~~l~------ 190 (440)
T KOG0302|consen 146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPH-----------------------------LNALS------ 190 (440)
T ss_pred cccccccccceeeecccCCcceeeeecccCcEEEEEchhh-----------------------------hhhhc------
Confidence 455777788888777754 46666777889999988632 11111
Q ss_pred ccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCc-EEEEE-cCCeEEEEEcCCCCCcccc
Q 014125 133 ASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGT-KIFAG-YNKSVRVFDVHRPGRDFEK 210 (430)
Q Consensus 133 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~-~d~~i~v~d~~~~~~~~~~ 210 (430)
.| .+.+. + ...+++.++..|.. .-++++|||-.. .+++| .-+.|++|...++.-
T Consensus 191 --~~--~~~~~----------~-s~~~Pl~t~~ghk~-----EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W---- 246 (440)
T KOG0302|consen 191 --EP--GLEVK----------D-SEFRPLFTFNGHKG-----EGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSW---- 246 (440)
T ss_pred --Cc--ccccc----------c-cccCceEEecccCc-----cceeeecccccccccccCccccceEeeeeccCce----
Confidence 00 00100 0 23445556665554 678999999432 23334 678899999877322
Q ss_pred cccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCce--eeEEeeccccCeEEEEEccCCCEEEEEecCCC
Q 014125 211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME--LLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDP 288 (430)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~ 288 (430)
..-...+.+|...|-.++|+|...++|++|+.||+|+|||++.+. .....+.|.+.|+.|.|+....+|++|+ .||
T Consensus 247 -~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~-DdG 324 (440)
T KOG0302|consen 247 -KVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGG-DDG 324 (440)
T ss_pred -eecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecC-CCc
Confidence 222334567999999999999999999999999999999999872 2233478999999999999988888888 999
Q ss_pred eEEEEeCCCCceEEEEeecccCCccceEEEEEcCCC-CEEEEEccCCcEEEEEcCCCCe----------------ecccc
Q 014125 289 YILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSG-RHLGTGGQDGLVHIYDLQTGKW----------------ISGFQ 351 (430)
Q Consensus 289 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~----------------~~~~~ 351 (430)
+++|||+|+.+.. .....+..|..+|+++.|+|.. ..|++++.|..|.+||+....- .+-+-
T Consensus 325 t~~iwDLR~~~~~-~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLF 403 (440)
T KOG0302|consen 325 TLSIWDLRQFKSG-QPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLF 403 (440)
T ss_pred eEEEEEhhhccCC-CcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEE
Confidence 9999999976432 2334446799999999999964 5688889999999999863211 11122
Q ss_pred cccC--CeeEEEEcCCCc-EEEEeeCCc
Q 014125 352 AAAD--TVNGFSFHPFLP-MAASSSGHR 376 (430)
Q Consensus 352 ~~~~--~v~~~~~~~~~~-~l~s~~~d~ 376 (430)
.|.+ .+..+.|++.-+ +|++.+.||
T Consensus 404 VHqGQke~KevhWH~QiPG~lvsTa~dG 431 (440)
T KOG0302|consen 404 VHQGQKEVKEVHWHRQIPGLLVSTAIDG 431 (440)
T ss_pred EecchhHhhhheeccCCCCeEEEecccc
Confidence 3433 688899999776 566655444
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-24 Score=187.01 Aligned_cols=265 Identities=20% Similarity=0.195 Sum_probs=201.4
Q ss_pred cccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccce
Q 014125 97 DVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAA 176 (430)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v 176 (430)
.+....-...-......+..+|.+.|.++.. .|.|..|++|+.||+|+||.+.+|.++..+.... .|
T Consensus 378 kLPsp~dLrPFPt~~~lvyrGHtg~Vr~iSv-------dp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~------~I 444 (733)
T KOG0650|consen 378 KLPSPKDLRPFPTRCALVYRGHTGLVRSISV-------DPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS------EI 444 (733)
T ss_pred cCCChhhcCCCcceeeeeEeccCCeEEEEEe-------cCCcceeeecCCCCcEEEEEeecceEEEEEeecc------ee
Confidence 3333333333334445567789999999998 6789999999999999999999999999988765 89
Q ss_pred EEEEECCCCc--EEEEEcCCeEEEEEcCCCCCc-----ccccc-------------c--------cc---CCCCCCCcce
Q 014125 177 FSVAFNPTGT--KIFAGYNKSVRVFDVHRPGRD-----FEKYS-------------T--------LK---GNKEGQAGIM 225 (430)
Q Consensus 177 ~~~~~~~~~~--~l~~~~d~~i~v~d~~~~~~~-----~~~~~-------------~--------~~---~~~~~~~~~v 225 (430)
.|++|+|.+. .|+++.+..+.|.+..-+... ...+. . .. ...-.|...|
T Consensus 445 ~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i 524 (733)
T KOG0650|consen 445 RSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSI 524 (733)
T ss_pred EEEEecCCCCceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCcc
Confidence 9999999875 444565555666554322100 00000 0 00 0112456789
Q ss_pred EEEEEcCCCCceEEEecCC---CeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEE
Q 014125 226 SAIAFSPTHTGMLAIGSYS---QTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVV 302 (430)
Q Consensus 226 ~~~~~~~~~~~~l~~~~~d---g~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~ 302 (430)
..+.|+. .+.+|++...+ ..|.|+++.......-|....+.|.++.|+|...+|++++ ...|++||+... ..+
T Consensus 525 ~~vtWHr-kGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT--q~~vRiYdL~kq-elv 600 (733)
T KOG0650|consen 525 RQVTWHR-KGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT--QRSVRIYDLSKQ-ELV 600 (733)
T ss_pred ceeeeec-CCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe--ccceEEEehhHH-HHH
Confidence 9999999 56677776553 5688999987766666665678899999999999999886 789999999874 332
Q ss_pred EEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCC-CCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeec
Q 014125 303 YKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQT-GKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVD 381 (430)
Q Consensus 303 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw 381 (430)
+.+ ......|..++.+|.|..|+.|+.|+.+..+|+.- .++.+.+..|...+++++||+..+++++|+.||.+.|+
T Consensus 601 KkL---~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 601 KKL---LTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVF 677 (733)
T ss_pred HHH---hcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEE
Confidence 222 34566789999999999999999999999999984 47888999999999999999999999999999999987
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.8e-24 Score=191.54 Aligned_cols=245 Identities=16% Similarity=0.195 Sum_probs=192.8
Q ss_pred ecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCC-ceeeeeecccccccccceEEEEECCCCcEEEEEcCC
Q 014125 116 VTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTG-LLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNK 194 (430)
Q Consensus 116 ~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~ 194 (430)
..|....+.++| .++|..|++++.||.|++|+.... +....+.... ..|.+++.... .+++++.++
T Consensus 10 yaht~G~t~i~~-------d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g-----~~v~~ia~~s~-~f~~~s~~~ 76 (933)
T KOG1274|consen 10 YAHTGGLTLICY-------DPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISG-----ELVSSIACYSN-HFLTGSEQN 76 (933)
T ss_pred hhccCceEEEEE-------cCCCCEEEEecCCCceEEeecCCcccCCchhhccC-----ceeEEEeeccc-ceEEeeccc
Confidence 456667888999 779999999999999999997655 2222222122 26667765433 444466999
Q ss_pred eEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEc
Q 014125 195 SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFS 274 (430)
Q Consensus 195 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~ 274 (430)
+|.+|.+..+... ..+..-.-++++++|+. ++.++|.|+.|-.|++.++.+......+.+|.++|.++.|+
T Consensus 77 tv~~y~fps~~~~--------~iL~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~ 147 (933)
T KOG1274|consen 77 TVLRYKFPSGEED--------TILARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYD 147 (933)
T ss_pred eEEEeeCCCCCcc--------ceeeeeeccceEEEEec-CCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEc
Confidence 9999999774331 12233456799999999 77899999999999999999999999999999999999999
Q ss_pred cCCCEEEEEecCCCeEEEEeCCCCceEEEEeecc----c-CCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecc
Q 014125 275 RDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRS----S-EHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISG 349 (430)
Q Consensus 275 ~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~----~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 349 (430)
|.+.+|++++ .||.|++||+.++.... .+... . .....+..++|+|+|..++....|+.|++|+..+++....
T Consensus 148 p~~~fLAvss-~dG~v~iw~~~~~~~~~-tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~ 225 (933)
T KOG1274|consen 148 PKGNFLAVSS-CDGKVQIWDLQDGILSK-TLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFK 225 (933)
T ss_pred CCCCEEEEEe-cCceEEEEEcccchhhh-hcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceehee
Confidence 9999999999 99999999998764321 11110 1 1144567899999988888888999999999999998877
Q ss_pred ccc--ccCCeeEEEEcCCCcEEEEeeCCceeeecCCC
Q 014125 350 FQA--AADTVNGFSFHPFLPMAASSSGHRRFPVDDFE 384 (430)
Q Consensus 350 ~~~--~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~ 384 (430)
+.. +...+..+.|+|.|+|||+++-||.|.|||.+
T Consensus 226 Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~ 262 (933)
T KOG1274|consen 226 LRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVD 262 (933)
T ss_pred ecccccccceEEEEEcCCCcEEeeeccCCcEEEEecc
Confidence 753 44459999999999999999999888888776
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.7e-25 Score=170.77 Aligned_cols=291 Identities=12% Similarity=0.130 Sum_probs=196.6
Q ss_pred eecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCc
Q 014125 54 RTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (430)
Q Consensus 54 ~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (430)
.++++|.+.|+++.|-.++ +|.+|..-|.|.+|++.+.... ......++..|..+.-.|
T Consensus 8 fvLRp~~~~v~s~~fqa~~-rL~sg~~~G~V~~w~lqt~r~~----------------~~~r~~g~~~it~lq~~p---- 66 (323)
T KOG0322|consen 8 FVLRPHSSSVTSVLFQANE-RLMSGLSVGIVKMWVLQTERDL----------------PLIRLFGRLFITNLQSIP---- 66 (323)
T ss_pred eEeccccchheehhhccch-hhhcccccceEEEEEeecCccc----------------hhhhhhccceeeceeecC----
Confidence 3577999999999998876 4889999999999999876432 223334556777776533
Q ss_pred cCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECC-----CCc---EEEEE--c-CCeEEEEEcC
Q 014125 134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNP-----TGT---KIFAG--Y-NKSVRVFDVH 202 (430)
Q Consensus 134 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~---~l~~~--~-d~~i~v~d~~ 202 (430)
+..|.+-++|+.+.+|++.-+..+..-.. .+.++.|.+ .++ .++.. . ...+.+-|..
T Consensus 67 ----~d~l~tqgRd~~L~lw~ia~s~~i~i~Si--------~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g 134 (323)
T KOG0322|consen 67 ----NDSLDTQGRDPLLILWTIAYSAFISIHSI--------VVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGG 134 (323)
T ss_pred ----CcchhhcCCCceEEEEEccCcceEEEeee--------eccccccccceeccCCCcchhheecCCcccchhhhhccC
Confidence 35688899999999999987655443321 233333322 111 11111 0 0012222211
Q ss_pred CCCCcccccccccCCCCCCCcceEEEEEcCCC--CceEEEecCCCeEEEEEcCCce----------eeEEeeccccCeEE
Q 014125 203 RPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTH--TGMLAIGSYSQTSAIYREDNME----------LLYVLHGQEGGVTH 270 (430)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~v~~~d~~~~~----------~~~~~~~~~~~i~~ 270 (430)
. . ...........+..+.+.+..+.... ..++++|.++|.|.+||+.++. .......|..+|.+
T Consensus 135 ~---~-tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvls 210 (323)
T KOG0322|consen 135 D---T-TQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLS 210 (323)
T ss_pred c---c-ceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCccee
Confidence 1 0 01111122223445667777754432 3467788899999999999873 33334568899999
Q ss_pred EEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccc
Q 014125 271 VQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGF 350 (430)
Q Consensus 271 ~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 350 (430)
+.|.+.-..=++++ .+..+..|.+.........-....-....+..+.+-||++.+|+++.|++|+||..++..++..+
T Consensus 211 ldyas~~~rGisgg-a~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVL 289 (323)
T KOG0322|consen 211 LDYASSCDRGISGG-ADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVL 289 (323)
T ss_pred eeechhhcCCcCCC-ccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhh
Confidence 99987655556677 78888899887542111111111123345777899999999999999999999999999999999
Q ss_pred ccccCCeeEEEEcCCCcEEEEeeCCceeeecC
Q 014125 351 QAAADTVNGFSFHPFLPMAASSSGHRRFPVDD 382 (430)
Q Consensus 351 ~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~ 382 (430)
+.|...|++++|+|+.+++|+++.|++|.+|+
T Consensus 290 kyHsagvn~vAfspd~~lmAaaskD~rISLWk 321 (323)
T KOG0322|consen 290 KYHSAGVNAVAFSPDCELMAAASKDARISLWK 321 (323)
T ss_pred hhhhcceeEEEeCCCCchhhhccCCceEEeee
Confidence 99999999999999999999998766666664
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.6e-23 Score=164.23 Aligned_cols=215 Identities=19% Similarity=0.300 Sum_probs=162.3
Q ss_pred cCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCc----------eeeeeecccccccccceEEEEECCCCc
Q 014125 117 TEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGL----------LRCTYRAYDAVDEITAAFSVAFNPTGT 186 (430)
Q Consensus 117 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~----------~~~~~~~~~~~~~~~~v~~~~~~~~~~ 186 (430)
.|++.|.++..-+. .|+++++|+.||.|.+||++... .++.........|.-.|.++.|-|-..
T Consensus 41 ~HgGsvNsL~id~t------egrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~Dt 114 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLT------EGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDT 114 (397)
T ss_pred cCCCccceeeeccc------cceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecC
Confidence 46677777776543 68899999999999999997642 122222223334566889999988654
Q ss_pred EEE--EEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCC--CceEEEecCCCeEEEEEcCCceeeEEee
Q 014125 187 KIF--AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTH--TGMLAIGSYSQTSAIYREDNMELLYVLH 262 (430)
Q Consensus 187 ~l~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~v~~~d~~~~~~~~~~~ 262 (430)
-++ ++.|.++++||.++-... ..+ .-++.|.+-+++|-. ..++|+|..+-.|++-|+.+|.....+.
T Consensus 115 GmFtssSFDhtlKVWDtnTlQ~a----~~F-----~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~Ls 185 (397)
T KOG4283|consen 115 GMFTSSSFDHTLKVWDTNTLQEA----VDF-----KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLS 185 (397)
T ss_pred ceeecccccceEEEeecccceee----EEe-----ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeec
Confidence 443 458999999999873221 111 123446666666632 3478899999999999999999999999
Q ss_pred ccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEe-----------ecccCCccceEEEEEcCCCCEEEEEc
Q 014125 263 GQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKL-----------YRSSEHTNQRILFDIEPSGRHLGTGG 331 (430)
Q Consensus 263 ~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~-----------~~~~~~~~~v~~~~~~~~~~~l~~~~ 331 (430)
+|.+.|.++.|+|...++++.++.||.|++||++........+ .....|.+.+..++|+.+|.++++.+
T Consensus 186 GHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~g 265 (397)
T KOG4283|consen 186 GHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCG 265 (397)
T ss_pred cccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhcc
Confidence 9999999999999999877766699999999998652221111 12356888999999999999999999
Q ss_pred cCCcEEEEEcCCCCe
Q 014125 332 QDGLVHIYDLQTGKW 346 (430)
Q Consensus 332 ~dg~i~vwd~~~~~~ 346 (430)
.|.++++|+..+|+.
T Consensus 266 td~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 266 TDDRIRVWNMESGRN 280 (397)
T ss_pred CccceEEeecccCcc
Confidence 999999999998764
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.2e-24 Score=175.68 Aligned_cols=229 Identities=15% Similarity=0.248 Sum_probs=180.4
Q ss_pred ceEEEEECC-------CCcEEEEE-cCCeEEEEEcCCCCCccccc-------------ccccCCCCCCCcceEEEEEcCC
Q 014125 175 AAFSVAFNP-------TGTKIFAG-YNKSVRVFDVHRPGRDFEKY-------------STLKGNKEGQAGIMSAIAFSPT 233 (430)
Q Consensus 175 ~v~~~~~~~-------~~~~l~~~-~d~~i~v~d~~~~~~~~~~~-------------~~~~~~~~~~~~~v~~~~~~~~ 233 (430)
...|+.|.. .|.++|.| .+..|.|||+.-.......+ ........+|+..|.+++|+..
T Consensus 175 fPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~ 254 (463)
T KOG0270|consen 175 FPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRN 254 (463)
T ss_pred cchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccc
Confidence 345666643 25788866 89999999987543322111 0111123478888999999998
Q ss_pred CCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCC-CEEEEEecCCCeEEEEeCCCCceEEEEeecccCCc
Q 014125 234 HTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDG-NYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHT 312 (430)
Q Consensus 234 ~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 312 (430)
-.++||+|+.|.+|++||+.++++...+..|.+.|.++.|+|.. ..|++|+ .|++|.+.|.|........ -...
T Consensus 255 ~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs-~D~~V~l~D~R~~~~s~~~----wk~~ 329 (463)
T KOG0270|consen 255 FRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGS-YDGTVALKDCRDPSNSGKE----WKFD 329 (463)
T ss_pred cceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEecc-ccceEEeeeccCccccCce----EEec
Confidence 88999999999999999999999999999999999999999965 4666777 9999999999964332222 1345
Q ss_pred cceEEEEEcCCC-CEEEEEccCCcEEEEEcCCC-CeecccccccCCeeEEEEcCCCc-EEEEeeCCceeeecCCCc----
Q 014125 313 NQRILFDIEPSG-RHLGTGGQDGLVHIYDLQTG-KWISGFQAAADTVNGFSFHPFLP-MAASSSGHRRFPVDDFED---- 385 (430)
Q Consensus 313 ~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~~~vw~~~~---- 385 (430)
+.|-.++|.|.. ..++++..||+|+-+|++.. +++.++++|.++|.+|++++.-+ +|+|++.|+.+++|+...
T Consensus 330 g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~ 409 (463)
T KOG0270|consen 330 GEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK 409 (463)
T ss_pred cceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCc
Confidence 678889999975 45778889999999999965 99999999999999999998665 889999999999994321
Q ss_pred ------------------------cccccCCCcEEEEeecccccccc
Q 014125 386 ------------------------LHLSGDENCVSVWSFLYASMMEN 408 (430)
Q Consensus 386 ------------------------l~~~~~d~~i~~w~~~~~~~~~~ 408 (430)
++.+|..+.+++||+........
T Consensus 410 ~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~k 456 (463)
T KOG0270|consen 410 SVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVRK 456 (463)
T ss_pred ccccccccccceeecccCCCcceEEEecCccceEEEeecccChhHHH
Confidence 77888888999999987665443
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.6e-23 Score=172.94 Aligned_cols=238 Identities=19% Similarity=0.281 Sum_probs=183.8
Q ss_pred CeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCC--ceeeeeecccccccccceEEEEECCCCc-EEE-EEcCCe
Q 014125 120 ESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTG--LLRCTYRAYDAVDEITAAFSVAFNPTGT-KIF-AGYNKS 195 (430)
Q Consensus 120 ~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~-~~~d~~ 195 (430)
+.|+++.|+| ...+|++++.||++++|.+... ..++.+..... +|.+.+|.|+|. .++ +|....
T Consensus 214 ~~I~sv~FHp-------~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~f-----Pi~~a~f~p~G~~~i~~s~rrky 281 (514)
T KOG2055|consen 214 GGITSVQFHP-------TAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKF-----PIQKAEFAPNGHSVIFTSGRRKY 281 (514)
T ss_pred CCceEEEecC-------CCceEEEecCCCcEEEEEecCccChhheeeeeccC-----ccceeeecCCCceEEEecccceE
Confidence 5799999955 5679999999999999998653 23333333333 899999999998 555 558889
Q ss_pred EEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEcc
Q 014125 196 VRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSR 275 (430)
Q Consensus 196 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~ 275 (430)
++.||+.+... ..+..........+....++| .+++|+..+..|.|.+....+++.+..++ -.+.|..++|+.
T Consensus 282 ~ysyDle~ak~-----~k~~~~~g~e~~~~e~FeVSh-d~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsS 354 (514)
T KOG2055|consen 282 LYSYDLETAKV-----TKLKPPYGVEEKSMERFEVSH-DSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSS 354 (514)
T ss_pred EEEeecccccc-----ccccCCCCcccchhheeEecC-CCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEec
Confidence 99999976422 111111111234577888999 66699999999999999999999998887 578899999999
Q ss_pred CCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCC------CCeecc
Q 014125 276 DGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQT------GKWISG 349 (430)
Q Consensus 276 ~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~------~~~~~~ 349 (430)
+++.|++++ .+|.|.+||++...... .... ...-.-++++.+++|.|||+|+..|.|.|||.++ .+++..
T Consensus 355 dsk~l~~~~-~~GeV~v~nl~~~~~~~-rf~D--~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~ 430 (514)
T KOG2055|consen 355 DSKELLASG-GTGEVYVWNLRQNSCLH-RFVD--DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKT 430 (514)
T ss_pred CCcEEEEEc-CCceEEEEecCCcceEE-EEee--cCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhh
Confidence 999999998 89999999999884332 3221 1222346788899999999999999999999763 567777
Q ss_pred cccccCCeeEEEEcCCCcEEEEeeC--Cceeee
Q 014125 350 FQAAADTVNGFSFHPFLPMAASSSG--HRRFPV 380 (430)
Q Consensus 350 ~~~~~~~v~~~~~~~~~~~l~s~~~--d~~~~v 380 (430)
+..-...|+++.|+|+.++||.+|. +..+++
T Consensus 431 ~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrL 463 (514)
T KOG2055|consen 431 VDNLTTAITSLQFNHDAQILAIASRVKKNALRL 463 (514)
T ss_pred hhhhheeeeeeeeCcchhhhhhhhhccccceEE
Confidence 7777789999999999999998876 344444
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.6e-25 Score=195.43 Aligned_cols=240 Identities=18% Similarity=0.290 Sum_probs=203.5
Q ss_pred ceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecccc
Q 014125 52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (430)
Q Consensus 52 ~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (430)
..+.+..|...|.++..-..++.+++|+.|..+.+|.+...... .....|..+|.++.|
T Consensus 20 ~~~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i-----------------~S~~~hespIeSl~f---- 78 (825)
T KOG0267|consen 20 DTREFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAI-----------------TSLTGHESPIESLTF---- 78 (825)
T ss_pred cchhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchh-----------------heeeccCCcceeeec----
Confidence 34567789999999998778899999999999999988654221 124667789999999
Q ss_pred CccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccc
Q 014125 132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEK 210 (430)
Q Consensus 132 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~ 210 (430)
+++..+|++|+.+|+|++||++.++.++++.++.. .+.++.|+|-+.+.+.| .|..+.+||++..+
T Consensus 79 ---~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~-----~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~G----- 145 (825)
T KOG0267|consen 79 ---DTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLL-----NITSVDFHPYGEFFASGSTDTDLKIWDIRKKG----- 145 (825)
T ss_pred ---CcchhhhcccccCCceeeeehhhhhhhhhhhcccc-----CcceeeeccceEEeccccccccceehhhhccC-----
Confidence 66788999999999999999999998888887766 88899999999999855 89999999998633
Q ss_pred cccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeE
Q 014125 211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYI 290 (430)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i 290 (430)
+...+.+|...+..+.|+| ++.+++.|++|.++++||+..++....|..|++.+.++.|+|..-.++.|+ .|+++
T Consensus 146 ---c~~~~~s~~~vv~~l~lsP-~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs-~d~tv 220 (825)
T KOG0267|consen 146 ---CSHTYKSHTRVVDVLRLSP-DGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGS-SDRTV 220 (825)
T ss_pred ---ceeeecCCcceeEEEeecC-CCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCC-CCcee
Confidence 3333466888899999999 778999999999999999999999999999999999999999988888888 99999
Q ss_pred EEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCC
Q 014125 291 LCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDG 334 (430)
Q Consensus 291 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 334 (430)
++||+++.... .........|.+..|+|++..+++|....
T Consensus 221 ~f~dletfe~I----~s~~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 221 RFWDLETFEVI----SSGKPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred eeeccceeEEe----eccCCccCCceeeeecCCceeeecCchhh
Confidence 99999875322 22244577899999999999999887764
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.2e-23 Score=179.94 Aligned_cols=302 Identities=18% Similarity=0.249 Sum_probs=202.6
Q ss_pred ceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecccc
Q 014125 52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (430)
Q Consensus 52 ~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (430)
.++.+..|.+.|..+.|-|....|++++.|.++++||+.+..+. -..+.++|...|.++||.|.
T Consensus 92 ~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~---------------G~~~~~GH~~SvkS~cf~~~- 155 (720)
T KOG0321|consen 92 QLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLV---------------GGRLNLGHTGSVKSECFMPT- 155 (720)
T ss_pred hhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceee---------------cceeecccccccchhhhccC-
Confidence 45678899999999999996679999999999999999876442 12257788899999999876
Q ss_pred CccCCCCceEEEEeCCCcEEEEeccCCce-------eeeeeccc---------------ccccccceEE---EEECCCCc
Q 014125 132 SASDPTSCVFASTTRDHPIHLWDATTGLL-------RCTYRAYD---------------AVDEITAAFS---VAFNPTGT 186 (430)
Q Consensus 132 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-------~~~~~~~~---------------~~~~~~~v~~---~~~~~~~~ 186 (430)
+...|++|+.||.|.|||+.-... ......+. ...+...|.+ +.+..|..
T Consensus 156 -----n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~ 230 (720)
T KOG0321|consen 156 -----NPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDES 230 (720)
T ss_pred -----CCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccc
Confidence 455899999999999999864320 00000000 0111123333 44445666
Q ss_pred EEE-EE-cCCeEEEEEcCCCCCcccccccccCCCCCC---CcceEEEEEcCCCCceEEEecCCCeEEEEEcCCce--eeE
Q 014125 187 KIF-AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQ---AGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME--LLY 259 (430)
Q Consensus 187 ~l~-~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~--~~~ 259 (430)
.|+ +| .|+.|+|||++......+..........-+ ...+.++.....+. +|++.+.|+.|++|++.+.. ++.
T Consensus 231 tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt-~L~AsCtD~sIy~ynm~s~s~sP~~ 309 (720)
T KOG0321|consen 231 TLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGT-YLFASCTDNSIYFYNMRSLSISPVA 309 (720)
T ss_pred eeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCC-eEEEEecCCcEEEEeccccCcCchh
Confidence 777 55 599999999997544333221111111122 34577777777445 55555559999999998653 344
Q ss_pred EeeccccC--eEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCC-CEEEEEccCCcE
Q 014125 260 VLHGQEGG--VTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSG-RHLGTGGQDGLV 336 (430)
Q Consensus 260 ~~~~~~~~--i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i 336 (430)
.+.++... -..-..+|++.+|++++ .|...++|.+.........+ .+|.-.|++++|.|.. .-++++++|.++
T Consensus 310 ~~sg~~~~sf~vks~lSpd~~~l~SgS-sd~~ayiw~vs~~e~~~~~l---~Ght~eVt~V~w~pS~~t~v~TcSdD~~~ 385 (720)
T KOG0321|consen 310 EFSGKLNSSFYVKSELSPDDCSLLSGS-SDEQAYIWVVSSPEAPPALL---LGHTREVTTVRWLPSATTPVATCSDDFRV 385 (720)
T ss_pred hccCcccceeeeeeecCCCCceEeccC-CCcceeeeeecCccCChhhh---hCcceEEEEEeeccccCCCceeeccCcce
Confidence 44443321 12234589999999999 99999999998876554333 6899999999999864 347777999999
Q ss_pred EEEEcCCCC--------------eecccccccCCeeEEEEcCCCcEEEEeeCCceeeec
Q 014125 337 HIYDLQTGK--------------WISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVD 381 (430)
Q Consensus 337 ~vwd~~~~~--------------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw 381 (430)
+||++..+- ....+++|...+..+.++-.+.+.... .+..++|
T Consensus 386 kiW~l~~~l~e~~~adk~s~v~~~~~rfk~~~p~~~nv~ss~~~t~~~pR--~~~~r~~ 442 (720)
T KOG0321|consen 386 KIWRLSNGLEEIYAADKDSIVYEYSRRFKGHLPQVLNVNSSLRKTYKDPR--EGMNRIS 442 (720)
T ss_pred EEEeccCchhhccccccchhhhhhhhhhhccccccccccccccccccchh--hhccccc
Confidence 999997542 233456666666666665443333322 4445555
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-23 Score=182.56 Aligned_cols=255 Identities=18% Similarity=0.247 Sum_probs=201.7
Q ss_pred eeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEE-EEECC-C-CcEEEE
Q 014125 114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFS-VAFNP-T-GTKIFA 190 (430)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~-~-~~~l~~ 190 (430)
...+|...|..++.. ++..++++++||++++|+-..++........... +-|.. +++.+ + ++.+.+
T Consensus 9 ~l~gH~~DVr~v~~~--------~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~---g~i~~~i~y~e~~~~~l~~g 77 (745)
T KOG0301|consen 9 ELEGHKSDVRAVAVT--------DGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPK---GFIANSICYAESDKGRLVVG 77 (745)
T ss_pred EeccCccchheeEec--------CCeEEeecCCCCceeeeeccCcccccceecccCc---ceeeccceeccccCcceEee
Confidence 344566778887762 3457999999999999998776655433222211 13333 56654 2 334556
Q ss_pred EcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEE
Q 014125 191 GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTH 270 (430)
Q Consensus 191 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~ 270 (430)
+.|.++.+|..... .....+.+|...|.+++... .. .+++|+.|.++++|-. +++...+++|...|.+
T Consensus 78 ~~D~~i~v~~~~~~--------~P~~~LkgH~snVC~ls~~~-~~-~~iSgSWD~TakvW~~--~~l~~~l~gH~asVWA 145 (745)
T KOG0301|consen 78 GMDTTIIVFKLSQA--------EPLYTLKGHKSNVCSLSIGE-DG-TLISGSWDSTAKVWRI--GELVYSLQGHTASVWA 145 (745)
T ss_pred cccceEEEEecCCC--------CchhhhhccccceeeeecCC-cC-ceEecccccceEEecc--hhhhcccCCcchheee
Confidence 79999999998773 33344589999999999776 33 4999999999999976 4666679999999999
Q ss_pred EEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccc
Q 014125 271 VQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGF 350 (430)
Q Consensus 271 ~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 350 (430)
+++-|.+ .+++|+ .|.+|++|.-.+. +..+.+|...|..+++-+++ .+++++.||.|+.|++ +|+.+..+
T Consensus 146 v~~l~e~-~~vTgs-aDKtIklWk~~~~------l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~ 215 (745)
T KOG0301|consen 146 VASLPEN-TYVTGS-ADKTIKLWKGGTL------LKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEM 215 (745)
T ss_pred eeecCCC-cEEecc-CcceeeeccCCch------hhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeee
Confidence 9999988 677888 9999999986432 23337899999999998864 5789999999999999 79999999
Q ss_pred ccccCCeeEEEEcCCCcEEEEeeCCceeeecCCC----------------------ccccccCCCcEEEEeec
Q 014125 351 QAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFE----------------------DLHLSGDENCVSVWSFL 401 (430)
Q Consensus 351 ~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~----------------------~l~~~~~d~~i~~w~~~ 401 (430)
.+|..-|.+++..+++..+++++.|+++++|+.. .+++++.||.||||...
T Consensus 216 ~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 216 HGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKDECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVD 288 (745)
T ss_pred eccceEEEEEEecCCCCeEEEecCCceEEEeecCceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEec
Confidence 9999999999988899999999999999999543 28899999999999887
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-22 Score=159.56 Aligned_cols=277 Identities=16% Similarity=0.259 Sum_probs=197.1
Q ss_pred CCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCC-------CcEEEE
Q 014125 81 DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRD-------HPIHLW 153 (430)
Q Consensus 81 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d-------g~i~vw 153 (430)
|..|.+.+++.+.. ......+.++.+.|+.++-+|. +..+|+++..+ -.+.||
T Consensus 39 dNqVhll~~d~e~s--------------~l~skvf~h~agEvw~las~P~------d~~ilaT~yn~~s~s~vl~~aaiw 98 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGS--------------ELLSKVFFHHAGEVWDLASSPF------DQRILATVYNDTSDSGVLTGAAIW 98 (370)
T ss_pred cceeEEEEecCccc--------------hhhhhhhhcCCcceehhhcCCC------CCceEEEEEeccCCCcceeeEEEE
Confidence 66777777765421 2233456677789999998764 45577776542 237899
Q ss_pred eccCCceeee---eec--ccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEE
Q 014125 154 DATTGLLRCT---YRA--YDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAI 228 (430)
Q Consensus 154 d~~~~~~~~~---~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 228 (430)
.+........ +.. .-...+.+.|.|+.|.|++..+++-.|..|.+|++........ .........+....++-
T Consensus 99 ~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~dn~i~l~~l~ess~~va--ev~ss~s~e~~~~ftsg 176 (370)
T KOG1007|consen 99 QIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVA--EVLSSESAEMRHSFTSG 176 (370)
T ss_pred ecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEeccCceEEEEcccCcchhe--eecccccccccceeccc
Confidence 9876432211 111 1111234588999999999999988899999999987544211 11111122356678889
Q ss_pred EEcCCC-CceEEEecCCCeEEEEEcCCceeeEEe-eccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEee
Q 014125 229 AFSPTH-TGMLAIGSYSQTSAIYREDNMELLYVL-HGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLY 306 (430)
Q Consensus 229 ~~~~~~-~~~l~~~~~dg~v~~~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~ 306 (430)
+|+|.. ++.++ ...|+++..||+++.+....+ .+|...|..+.|+|+.++++++++.||.|++||.+..+.++..+
T Consensus 177 ~WspHHdgnqv~-tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el- 254 (370)
T KOG1007|consen 177 AWSPHHDGNQVA-TTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQEL- 254 (370)
T ss_pred ccCCCCccceEE-EeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcccccc-
Confidence 999943 44444 456899999999988766555 46888899999999988666555599999999999887665444
Q ss_pred cccCCccceEEEEEcCC-CCEEEEEccCCcEEEEEcCCC-----------------------------CeecccccccCC
Q 014125 307 RSSEHTNQRILFDIEPS-GRHLGTGGQDGLVHIYDLQTG-----------------------------KWISGFQAAADT 356 (430)
Q Consensus 307 ~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~-----------------------------~~~~~~~~~~~~ 356 (430)
.+|...++++.|+|. .++|++|+.|..|.+|...+- ..+.++..|.+.
T Consensus 255 --~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDS 332 (370)
T KOG1007|consen 255 --PGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDS 332 (370)
T ss_pred --CCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccc
Confidence 789999999999996 478899999999999976421 123456779999
Q ss_pred eeEEEEcCCCc-EEEEeeCCceeeecCC
Q 014125 357 VNGFSFHPFLP-MAASSSGHRRFPVDDF 383 (430)
Q Consensus 357 v~~~~~~~~~~-~l~s~~~d~~~~vw~~ 383 (430)
|.+++|+.-.+ .+|+-+.||++.|-..
T Consensus 333 VY~~aWSsadPWiFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 333 VYALAWSSADPWIFASLSYDGRVIISSV 360 (370)
T ss_pred eEEEeeccCCCeeEEEeccCceEEeecC
Confidence 99999998777 5566687888877543
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-24 Score=200.55 Aligned_cols=291 Identities=19% Similarity=0.292 Sum_probs=214.1
Q ss_pred EEEECcCCc-eEEEecC----------CCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCc
Q 014125 65 GIKWSPDGS-SFLTSSE----------DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (430)
Q Consensus 65 ~~~~sp~~~-~l~s~~~----------dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (430)
.++|+|++. +||+|.. +.++.||.+.-..... .....-.+.....-+.++|.+....
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~------------dlk~~~s~~s~~rF~kL~W~~~g~~ 78 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESS------------DLKPVGSLQSSNRFNKLAWGSYGSH 78 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCccc------------cccccccccccccceeeeecccCCC
Confidence 478999886 6665532 4455666554221111 0112222334467888999653221
Q ss_pred cCCCCceEEEEeCCCcEEEEeccCC---c---eeeeeecccccccccceEEEEECCCCc-EEEEE-cCCeEEEEEcCCCC
Q 014125 134 SDPTSCVFASTTRDHPIHLWDATTG---L---LRCTYRAYDAVDEITAAFSVAFNPTGT-KIFAG-YNKSVRVFDVHRPG 205 (430)
Q Consensus 134 ~~~~~~~l~~~~~dg~i~vwd~~~~---~---~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~-~d~~i~v~d~~~~~ 205 (430)
+ ..+++.|..||.|.+||...- . .+..... |.+.|..+.|++... ++++| .+|.|.|||+....
T Consensus 79 --~-~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~-----h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~ 150 (1049)
T KOG0307|consen 79 --S-HGLIAGGLEDGNIVLYDPASIIANASEEVLATKSK-----HTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPE 150 (1049)
T ss_pred --c-cceeeccccCCceEEecchhhccCcchHHHhhhcc-----cCCceeeeeccccCCceeeccCCCCcEEEeccCCcC
Confidence 1 136899999999999998652 2 2223333 445999999999887 67755 89999999998754
Q ss_pred CcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeecccc--CeEEEEEccCCC-EEEE
Q 014125 206 RDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEG--GVTHVQFSRDGN-YLYT 282 (430)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~--~i~~~~~~~~~~-~l~~ 282 (430)
.++..- .......|.+++|+..-..+|++++.+|++.|||++..+.+..+..+.+ .+..++|+|+.. .|++
T Consensus 151 tP~~~~------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~ 224 (1049)
T KOG0307|consen 151 TPFTPG------SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLV 224 (1049)
T ss_pred CCCCCC------CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeee
Confidence 433221 1234567999999987788999999999999999999888777765544 477999999865 4555
Q ss_pred EecCC--CeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCC-CEEEEEccCCcEEEEEcCCCCeecccccccCCeeE
Q 014125 283 GGRKD--PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSG-RHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNG 359 (430)
Q Consensus 283 ~~~~d--~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~ 359 (430)
++.+| -.|.+||+|........+ ..|...|.++.|++.+ ++|++++.|++|.+|+.++++.+..+....+.+..
T Consensus 225 As~dd~~PviqlWDlR~assP~k~~---~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fd 301 (1049)
T KOG0307|consen 225 ASGDDSAPVIQLWDLRFASSPLKIL---EGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFD 301 (1049)
T ss_pred ecCCCCCceeEeecccccCCchhhh---cccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceee
Confidence 55233 369999999876655444 6899999999999976 88999999999999999999999999988889999
Q ss_pred EEEcCCCc-EEEEeeCCceeeecCCC
Q 014125 360 FSFHPFLP-MAASSSGHRRFPVDDFE 384 (430)
Q Consensus 360 ~~~~~~~~-~l~s~~~d~~~~vw~~~ 384 (430)
+.|+|... .++.++-||.|.|+...
T Consensus 302 v~w~pr~P~~~A~asfdgkI~I~sl~ 327 (1049)
T KOG0307|consen 302 VQWCPRNPSVMAAASFDGKISIYSLQ 327 (1049)
T ss_pred eeecCCCcchhhhheeccceeeeeee
Confidence 99999888 77778888888888443
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.6e-23 Score=174.59 Aligned_cols=263 Identities=15% Similarity=0.209 Sum_probs=198.7
Q ss_pred eeEEEECcCCceEEE--ecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCce
Q 014125 63 LKGIKWSPDGSSFLT--SSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV 140 (430)
Q Consensus 63 v~~~~~sp~~~~l~s--~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (430)
+.++.|+.... |++ .+.|..|++|.-... . ...+.+....+..-.|++. .....+
T Consensus 37 ~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~--~-------------~~Vp~~~k~~gd~~~Cv~~-------~s~S~y 93 (673)
T KOG4378|consen 37 DFSFNWQRRNF-LVVASMAGDKVMRIKEKDGK--T-------------PEVPRVRKLTGDNAFCVAC-------ASQSLY 93 (673)
T ss_pred ceeeeccccce-EEEeecCCceeEEEecccCC--C-------------CccceeeccccchHHHHhh-------hhccee
Confidence 89999987653 444 455788999965432 1 1122222223333344433 223478
Q ss_pred EEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccccccccCCCC
Q 014125 141 FASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKE 219 (430)
Q Consensus 141 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~ 219 (430)
+++|+..+.|+|||+....+.+.++.|.. .|+++.++-...+|+++ ..|.|.|..+.++..... + ..
T Consensus 94 ~~sgG~~~~Vkiwdl~~kl~hr~lkdh~s-----tvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~----f---~~ 161 (673)
T KOG4378|consen 94 EISGGQSGCVKIWDLRAKLIHRFLKDHQS-----TVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTT----F---TI 161 (673)
T ss_pred eeccCcCceeeehhhHHHHHhhhccCCcc-----eeEEEEecCCcceeEEeccCCcEEEEecccCccccc----e---ec
Confidence 99999999999999997777777776665 99999999999999955 778999999877433211 1 12
Q ss_pred CCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEe-eccccCeEEEEEccCCC-EEEEEecCCCeEEEEeCCC
Q 014125 220 GQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVL-HGQEGGVTHVQFSRDGN-YLYTGGRKDPYILCWDLRK 297 (430)
Q Consensus 220 ~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~-~l~~~~~~d~~i~i~d~~~ 297 (430)
+....++-+.|+|....+|.+++.+|.|.+||+....+...+ ..|..+...|+|+|... .|++.| .|..|.+||.+.
T Consensus 162 ~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG-~Dkki~~yD~~s 240 (673)
T KOG4378|consen 162 DSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVG-YDKKINIYDIRS 240 (673)
T ss_pred CCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEec-ccceEEEeeccc
Confidence 223457799999988888999999999999999887766554 57999999999999766 455666 999999999986
Q ss_pred CceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCC-CCeecccccccCCeeEEEEcCCC
Q 014125 298 AVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQT-GKWISGFQAAADTVNGFSFHPFL 366 (430)
Q Consensus 298 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~ 366 (430)
.... .. .....+...++|+++|.+|+.|+..|.|..||++. ..++.++..|...|++++|-|.-
T Consensus 241 ~~s~-~~----l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 241 QAST-DR----LTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred cccc-ce----eeecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 5322 12 23566788999999999999999999999999985 56788999999999999998864
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.2e-23 Score=163.74 Aligned_cols=301 Identities=18% Similarity=0.225 Sum_probs=210.8
Q ss_pred ceeecccCCCceeEEEECc-----CCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeee
Q 014125 52 QFRTSSIPNNFLKGIKWSP-----DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFC 126 (430)
Q Consensus 52 ~~~~~~~h~~~v~~~~~sp-----~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 126 (430)
..+....|+.+|..++|++ +-+.+|++|.+ .+.+|......-...++. ...-.+.+..+.++
T Consensus 30 t~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~ir~lq~------------y~D~d~~Esfytcs 96 (385)
T KOG1034|consen 30 TNHLKEDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGIRLLQS------------YADEDHDESFYTCS 96 (385)
T ss_pred eeehhccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccceeeeee------------ccCCCCCcceEEEE
Confidence 3457788999999999985 23567777765 788888764321111100 01113556778888
Q ss_pred eccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE--EEcCCeEEEEEcCCC
Q 014125 127 WFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF--AGYNKSVRVFDVHRP 204 (430)
Q Consensus 127 ~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~~~d~~i~v~d~~~~ 204 (430)
|.-.... ...++|.|+.-|.|+|.|+.+++....+..|.. .|..+.++|+...++ ++.|..|++|++++.
T Consensus 97 w~yd~~~---~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~-----sINeik~~p~~~qlvls~SkD~svRlwnI~~~ 168 (385)
T KOG1034|consen 97 WSYDSNT---GNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGG-----SINEIKFHPDRPQLVLSASKDHSVRLWNIQTD 168 (385)
T ss_pred EEecCCC---CCeeEEeecceeEEEEEecchhhhccceeccCc-----cchhhhcCCCCCcEEEEecCCceEEEEeccCC
Confidence 8543221 245889999999999999999999999998887 999999999985444 559999999999874
Q ss_pred CCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeE-------------------------
Q 014125 205 GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLY------------------------- 259 (430)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~------------------------- 259 (430)
.. ..+-....+|...|.++.|++ .+.++++++.|.++++|++...+...
T Consensus 169 ~C-----v~VfGG~egHrdeVLSvD~~~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp 242 (385)
T KOG1034|consen 169 VC-----VAVFGGVEGHRDEVLSVDFSL-DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFP 242 (385)
T ss_pred eE-----EEEecccccccCcEEEEEEcC-CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccc
Confidence 21 223344579999999999999 55599999999999999998332100
Q ss_pred ---EeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCce----------EEEEeecccCCccceEE--EEEcCCC
Q 014125 260 ---VLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQ----------VVYKLYRSSEHTNQRIL--FDIEPSG 324 (430)
Q Consensus 260 ---~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~----------~~~~~~~~~~~~~~v~~--~~~~~~~ 324 (430)
+-.-|...|-|+.| -|.++++-+ .++.|..|....... ....+.+..-....++- .+|.|-+
T Consensus 243 ~fst~diHrnyVDCvrw--~gd~ilSks-cenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~ 319 (385)
T KOG1034|consen 243 DFSTTDIHRNYVDCVRW--FGDFILSKS-CENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQ 319 (385)
T ss_pred cccccccccchHHHHHH--Hhhheeecc-cCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHH
Confidence 11235666777777 467888888 789999998721111 11122222233344444 4556668
Q ss_pred CEEEEEccCCcEEEEEcCCCCeec--cccc--ccCCeeEEEEcCCCcEEEEeeCCceeeecC
Q 014125 325 RHLGTGGQDGLVHIYDLQTGKWIS--GFQA--AADTVNGFSFHPFLPMAASSSGHRRFPVDD 382 (430)
Q Consensus 325 ~~l~~~~~dg~i~vwd~~~~~~~~--~~~~--~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~ 382 (430)
+.||.|...|.|++||++..++.. ++.. ....|...+|+.++.+|+..+.|+.|.-||
T Consensus 320 ~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 320 KMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred HHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 999999999999999999877632 2221 234699999999999999988665555554
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.5e-23 Score=168.73 Aligned_cols=210 Identities=20% Similarity=0.319 Sum_probs=156.1
Q ss_pred ceEEEEECCCC-cEEEEE--cCCeEEEEEcCCCCCccc--------ccccccCCCCCCCcceEEEEEcCCCCceEEEecC
Q 014125 175 AAFSVAFNPTG-TKIFAG--YNKSVRVFDVHRPGRDFE--------KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY 243 (430)
Q Consensus 175 ~v~~~~~~~~~-~~l~~~--~d~~i~v~d~~~~~~~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 243 (430)
.+..+.-++-+ ..++++ ..|.|.||++...-..+. ........+.+|...-..++|+|.....|++|..
T Consensus 153 ~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc 232 (440)
T KOG0302|consen 153 GINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDC 232 (440)
T ss_pred ccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCcc
Confidence 55555555554 333343 679999999875322111 1111222346788888999999977778999999
Q ss_pred CCeEEEEEcCCcee---eEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEE
Q 014125 244 SQTSAIYREDNMEL---LYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDI 320 (430)
Q Consensus 244 dg~v~~~d~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~ 320 (430)
-+.|++|...++.- ...+.+|...|-.++|||..+.++++|+.||+|+|||+|.+.+...... ..|.+.|+.++|
T Consensus 233 ~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~--kAh~sDVNVISW 310 (440)
T KOG0302|consen 233 VKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST--KAHNSDVNVISW 310 (440)
T ss_pred ccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe--eccCCceeeEEc
Confidence 99999999888643 2345679999999999998765555554999999999998743322222 678899999999
Q ss_pred cCCCCEEEEEccCCcEEEEEcCC---CCeecccccccCCeeEEEEcCCCc-EEEEeeCCceeeecCCCccccccCCCcEE
Q 014125 321 EPSGRHLGTGGQDGLVHIYDLQT---GKWISGFQAAADTVNGFSFHPFLP-MAASSSGHRRFPVDDFEDLHLSGDENCVS 396 (430)
Q Consensus 321 ~~~~~~l~~~~~dg~i~vwd~~~---~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~~~vw~~~~l~~~~~d~~i~ 396 (430)
+....+||+|+.||+++|||++. ++++..|+.|..+|++|.|+|... .|+++ |.|..|.
T Consensus 311 nr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaas-----------------g~D~Qit 373 (440)
T KOG0302|consen 311 NRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAAS-----------------GEDNQIT 373 (440)
T ss_pred cCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEec-----------------cCCCcEE
Confidence 99888999999999999999985 677889999999999999999754 33333 4577777
Q ss_pred EEeeccc
Q 014125 397 VWSFLYA 403 (430)
Q Consensus 397 ~w~~~~~ 403 (430)
+||++..
T Consensus 374 iWDlsvE 380 (440)
T KOG0302|consen 374 IWDLSVE 380 (440)
T ss_pred EEEeecc
Confidence 7777643
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-22 Score=169.14 Aligned_cols=246 Identities=15% Similarity=0.174 Sum_probs=177.5
Q ss_pred ecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCc----eeeeeecccccccccceEEEEECCCC--cEEE
Q 014125 116 VTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGL----LRCTYRAYDAVDEITAAFSVAFNPTG--TKIF 189 (430)
Q Consensus 116 ~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~ 189 (430)
..+.+.|++++|+| ....+++++|..-|+|-+||+.+.+ -+..+..|.. +|.++.|+|.+ +++.
T Consensus 183 kv~~~Rit~l~fHP-----t~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~-----~Vs~l~F~P~n~s~i~s 252 (498)
T KOG4328|consen 183 KVTDRRITSLAFHP-----TENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSG-----PVSGLKFSPANTSQIYS 252 (498)
T ss_pred EecccceEEEEecc-----cCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCc-----cccceEecCCChhheee
Confidence 34567899999988 4455789999999999999995322 2333344433 89999999976 4555
Q ss_pred EEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCcee-eEEeeccccCe
Q 014125 190 AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL-LYVLHGQEGGV 268 (430)
Q Consensus 190 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~-~~~~~~~~~~i 268 (430)
++.||+|++-|++..-. +.+.. .......+..+.|+.. ...++.+..=|...+||+++.+. ...+.-|...|
T Consensus 253 sSyDGtiR~~D~~~~i~--e~v~s----~~~d~~~fs~~d~~~e-~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI 325 (498)
T KOG4328|consen 253 SSYDGTIRLQDFEGNIS--EEVLS----LDTDNIWFSSLDFSAE-SRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKI 325 (498)
T ss_pred eccCceeeeeeecchhh--HHHhh----cCccceeeeeccccCC-CccEEEeecccceEEEEeecCCccchhhhhhhccc
Confidence 78999999999976311 11111 1234456888899884 44556666666999999998765 66677788899
Q ss_pred EEEEEccCCCE-EEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcC----C
Q 014125 269 THVQFSRDGNY-LYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQ----T 343 (430)
Q Consensus 269 ~~~~~~~~~~~-l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~----~ 343 (430)
.+++++|-..+ |++++ .|++.+|||++........+.....|...|.+..|||++-.|++.+.|..|+|||.. .
T Consensus 326 ~sv~~NP~~p~~laT~s-~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~ 404 (498)
T KOG4328|consen 326 TSVALNPVCPWFLATAS-LDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAK 404 (498)
T ss_pred ceeecCCCCchheeecc-cCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeeccccccc
Confidence 99999997765 55555 999999999987543321233336799999999999998889999999999999983 3
Q ss_pred CCeecccccccC------CeeEEEEcCCCcEEEEeeCCceeee
Q 014125 344 GKWISGFQAAAD------TVNGFSFHPFLPMAASSSGHRRFPV 380 (430)
Q Consensus 344 ~~~~~~~~~~~~------~v~~~~~~~~~~~l~s~~~d~~~~v 380 (430)
-.+...+. |.. ......|.|+..+++.+-.-..|-|
T Consensus 405 ~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv 446 (498)
T KOG4328|consen 405 DEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDV 446 (498)
T ss_pred CCccceee-ccCcccccccchhheeCCCccEEEEeccCcceeE
Confidence 34444443 322 2445689999999999875443333
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.7e-21 Score=169.29 Aligned_cols=256 Identities=16% Similarity=0.269 Sum_probs=198.3
Q ss_pred ecccC-CCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCc
Q 014125 55 TSSIP-NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (430)
Q Consensus 55 ~~~~h-~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (430)
++.+| +..|-+++|++ +..|++.+.+|.|.-||+.+.+...... ..++.|++++-
T Consensus 63 vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~~~~d-----------------~~gg~IWsiai------ 118 (691)
T KOG2048|consen 63 VIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQKYNID-----------------SNGGAIWSIAI------ 118 (691)
T ss_pred EEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCceeEEec-----------------CCCcceeEEEe------
Confidence 44455 46899999995 5578899999999999998775433222 23478999998
Q ss_pred cCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccccc
Q 014125 134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYS 212 (430)
Q Consensus 134 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~ 212 (430)
+|.+..++.|+.||.+..++...++......... ....+.+++|+|++..+++| .||.|++||...+........
T Consensus 119 -~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~r---q~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~ 194 (691)
T KOG2048|consen 119 -NPENTILAIGCDDGVLYDFSIGPDKITYKRSLMR---QKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITM 194 (691)
T ss_pred -CCccceEEeecCCceEEEEecCCceEEEEeeccc---ccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeee
Confidence 5678899999999988888887776554433322 12489999999999988865 899999999987544321111
Q ss_pred cccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEE
Q 014125 213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILC 292 (430)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i 292 (430)
.+..........|.++.|-.+ ..+++|...|+|.+||...+..+..+..|...|.+++.++++..++++| .|+.|..
T Consensus 195 ~~d~l~k~~~~iVWSv~~Lrd--~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaG-vd~~ii~ 271 (691)
T KOG2048|consen 195 QLDRLSKREPTIVWSVLFLRD--STIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAG-VDPKIIQ 271 (691)
T ss_pred cccccccCCceEEEEEEEeec--CcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEcc-CCCceEE
Confidence 122222334556888888753 3899999999999999999999999999999999999999999999999 9999999
Q ss_pred EeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCC
Q 014125 293 WDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQT 343 (430)
Q Consensus 293 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 343 (430)
|...+.............|...+.+++..++ .+++|+.|..+.+-..+.
T Consensus 272 ~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 272 YSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSRE 320 (691)
T ss_pred EEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccc
Confidence 9888775533344444678889999998876 899999999998876654
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.8e-22 Score=159.12 Aligned_cols=235 Identities=13% Similarity=0.128 Sum_probs=185.4
Q ss_pred eEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCC
Q 014125 176 AFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN 254 (430)
Q Consensus 176 v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~ 254 (430)
..|+.|++.|.+++.| .||.|.|||+.+. .+...+.+|..+|++++|++ +++.|++++.|..|.+||+..
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~--------~iar~lsaH~~pi~sl~WS~-dgr~LltsS~D~si~lwDl~~ 96 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTF--------RIARMLSAHVRPITSLCWSR-DGRKLLTSSRDWSIKLWDLLK 96 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEcccc--------chhhhhhccccceeEEEecC-CCCEeeeecCCceeEEEeccC
Confidence 5689999999999966 9999999999873 34445678999999999999 777999999999999999999
Q ss_pred ceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCC
Q 014125 255 MELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDG 334 (430)
Q Consensus 255 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 334 (430)
+.+++.+. ...+|+...|+|.....++++-.+..-.+-++..+..................+..|++.|+++++|...|
T Consensus 97 gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKG 175 (405)
T KOG1273|consen 97 GSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKG 175 (405)
T ss_pred CCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcc
Confidence 99998887 67899999999965544444335666666677655443333222111222223346889999999999999
Q ss_pred cEEEEEcCCCCeeccccccc-CCeeEEEEcCCCcEEEEeeCCceeeecCCCc----------------------------
Q 014125 335 LVHIYDLQTGKWISGFQAAA-DTVNGFSFHPFLPMAASSSGHRRFPVDDFED---------------------------- 385 (430)
Q Consensus 335 ~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~---------------------------- 385 (430)
.+.|+|..+.+++..++-.. ..|.++.++..|..|+.-+.|+.|++++...
T Consensus 176 kllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~c 255 (405)
T KOG1273|consen 176 KLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKC 255 (405)
T ss_pred eEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhhe
Confidence 99999999999999888666 7899999999999999999999999995432
Q ss_pred ---------cccccCCCcEEEEeecccccccccCCCCcceeeee
Q 014125 386 ---------LHLSGDENCVSVWSFLYASMMENADGINGCEFNCQ 420 (430)
Q Consensus 386 ---------l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 420 (430)
.+++..-..++||.-..|.++..+.|-.|.....+
T Consensus 256 cfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV 299 (405)
T KOG1273|consen 256 CFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDV 299 (405)
T ss_pred eecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeec
Confidence 23334466899999999999999998876554433
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-21 Score=179.60 Aligned_cols=296 Identities=16% Similarity=0.285 Sum_probs=205.7
Q ss_pred cCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCC
Q 014125 58 IPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT 137 (430)
Q Consensus 58 ~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 137 (430)
+....-..+.|+|-...++++...-.|+|||.+.++....+.... .....|.++.+.. ..|
T Consensus 1062 ~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~--------------~~~t~Vs~l~liN-----e~D 1122 (1387)
T KOG1517|consen 1062 GNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGA--------------FPDTRVSDLELIN-----EQD 1122 (1387)
T ss_pred cCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCC--------------CCCCccceeeeec-----ccc
Confidence 334456778899988899999877799999999887654443322 1235677777754 446
Q ss_pred CceEEEEeCCCcEEEEeccCC-----ceeeeeecccccc--cccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCccc
Q 014125 138 SCVFASTTRDHPIHLWDATTG-----LLRCTYRAYDAVD--EITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFE 209 (430)
Q Consensus 138 ~~~l~~~~~dg~i~vwd~~~~-----~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~ 209 (430)
..++++|+.||.|+||+--.. +.+..+....... ..+.-.-+.|.....+|+ +|.-..|+|||......
T Consensus 1123 ~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~--- 1199 (1387)
T KOG1517|consen 1123 DALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQV--- 1199 (1387)
T ss_pred hhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEeccccee---
Confidence 678999999999999974322 2333332222111 111113456776665666 55678999999976321
Q ss_pred ccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCce---eeEEeeccccC--eEEEEEccCCCE-EEEE
Q 014125 210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME---LLYVLHGQEGG--VTHVQFSRDGNY-LYTG 283 (430)
Q Consensus 210 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~---~~~~~~~~~~~--i~~~~~~~~~~~-l~~~ 283 (430)
......+....++++.-+...++++++|..||.|++||.+... .+...+.|... |..+.+.+.|-. |+++
T Consensus 1200 ----~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSg 1275 (1387)
T KOG1517|consen 1200 ----VADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSG 1275 (1387)
T ss_pred ----EeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeee
Confidence 1111233455688887777678999999999999999988643 45666778776 999999886654 8888
Q ss_pred ecCCCeEEEEeCCCCceE-EEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccc-------cC
Q 014125 284 GRKDPYILCWDLRKAVQV-VYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAA-------AD 355 (430)
Q Consensus 284 ~~~d~~i~i~d~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-------~~ 355 (430)
+ .||.|++||++..... ...+.......+.++++..++....+|+|+. +.|+||++. |+.+..++.+ .+
T Consensus 1276 s-~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~g 1352 (1387)
T KOG1517|consen 1276 S-QDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIG 1352 (1387)
T ss_pred c-cCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCC
Confidence 8 9999999999984222 1111111222346899999999999999998 899999987 4444444322 34
Q ss_pred CeeEEEEcCCCcEEEEeeCCceeeecC
Q 014125 356 TVNGFSFHPFLPMAASSSGHRRFPVDD 382 (430)
Q Consensus 356 ~v~~~~~~~~~~~l~s~~~d~~~~vw~ 382 (430)
.+.+++|||...+||+|+.|..|.||.
T Consensus 1353 s~scL~FHP~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1353 SVSCLAFHPHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred CcceeeecchhHhhhhccCCceEEEee
Confidence 689999999999999998777776664
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-21 Score=152.97 Aligned_cols=259 Identities=13% Similarity=0.203 Sum_probs=187.3
Q ss_pred CeeeeeeeccccCccCCCCceEEEEeC----CCcEEEEecc--CCceeeeeecccccccccceEEEEECCCCc----EEE
Q 014125 120 ESVYDFCWFPHMSASDPTSCVFASTTR----DHPIHLWDAT--TGLLRCTYRAYDAVDEITAAFSVAFNPTGT----KIF 189 (430)
Q Consensus 120 ~~v~~~~~~~~~~~~~~~~~~l~~~~~----dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~l~ 189 (430)
-+++++.|+.. ...+.+|+.|+. .+.|.+..+. +++.+. ...+++.-+++.+.|.|+.. -++
T Consensus 45 ~~lya~~Ws~~----~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~----~a~fd~~YP~tK~~wiPd~~g~~pdlL 116 (364)
T KOG0290|consen 45 WPLYAMNWSVR----PDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVE----DANFDHPYPVTKLMWIPDSKGVYPDLL 116 (364)
T ss_pred CceeeeccccC----CCcceeEEEeeeccccCCeeEEEEEccCCCceec----cCCCCCCCCccceEecCCccccCcchh
Confidence 57888999653 223457888764 3557776554 233222 22245666899999999873 344
Q ss_pred EEcCCeEEEEEcCCCCCccccccccc-CCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCce---eeEEeeccc
Q 014125 190 AGYNKSVRVFDVHRPGRDFEKYSTLK-GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME---LLYVLHGQE 265 (430)
Q Consensus 190 ~~~d~~i~v~d~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~---~~~~~~~~~ 265 (430)
++.+..+|+|.+............+. .....+..+++++.|+.-+.+++.+++-|-+..|||+.++. ....+.+|.
T Consensus 117 ATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHD 196 (364)
T KOG0290|consen 117 ATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHD 196 (364)
T ss_pred hcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecC
Confidence 56677999999986443332222221 12345567999999999889999999999999999999863 356677899
Q ss_pred cCeEEEEEccCCCE-EEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCC-CEEEEEccCC-cEEEEEcC
Q 014125 266 GGVTHVQFSRDGNY-LYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSG-RHLGTGGQDG-LVHIYDLQ 342 (430)
Q Consensus 266 ~~i~~~~~~~~~~~-l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg-~i~vwd~~ 342 (430)
..|..++|...+.. +++.| .||.||+||+|...... .++.......+...++|++.. +++|+-..|+ .|.|.|++
T Consensus 197 KEV~DIaf~~~s~~~FASvg-aDGSvRmFDLR~leHST-IIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR 274 (364)
T KOG0290|consen 197 KEVYDIAFLKGSRDVFASVG-ADGSVRMFDLRSLEHST-IIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIR 274 (364)
T ss_pred cceeEEEeccCccceEEEec-CCCcEEEEEecccccce-EEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEec
Confidence 99999999987664 55555 99999999999875443 344444446788899998854 6788776664 59999998
Q ss_pred C-CCeecccccccCCeeEEEEcCCCc-EEEEeeCCceeeecCCCcccc
Q 014125 343 T-GKWISGFQAAADTVNGFSFHPFLP-MAASSSGHRRFPVDDFEDLHL 388 (430)
Q Consensus 343 ~-~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~~~vw~~~~l~~ 388 (430)
. ..++..+++|.+.|++++|.|... .|++++.|....+||..+..-
T Consensus 275 ~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~ 322 (364)
T KOG0290|consen 275 VPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPR 322 (364)
T ss_pred CCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccc
Confidence 5 567899999999999999999654 777777666666666655544
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.2e-22 Score=169.50 Aligned_cols=305 Identities=17% Similarity=0.224 Sum_probs=222.3
Q ss_pred eecceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeec
Q 014125 49 FYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWF 128 (430)
Q Consensus 49 ~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 128 (430)
.+.....+.+|.+.|..|.|+..|..|++||.|..|.+||+...+.+ .....+|...|..-.|.
T Consensus 131 r~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~----------------l~f~SGH~~NvfQaKFi 194 (559)
T KOG1334|consen 131 RLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPK----------------LSFESGHCNNVFQAKFI 194 (559)
T ss_pred HhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcc----------------cccccccccchhhhhcc
Confidence 34566789999999999999999999999999999999999876432 23344566778888888
Q ss_pred cccCccCCCCceEEEEeCCCcEEEEeccCCceee-eeecccccccccceEEEEECCCCcE--EEEEcCCeEEEEEcCCCC
Q 014125 129 PHMSASDPTSCVFASTTRDHPIHLWDATTGLLRC-TYRAYDAVDEITAAFSVAFNPTGTK--IFAGYNKSVRVFDVHRPG 205 (430)
Q Consensus 129 ~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~d~~i~v~d~~~~~ 205 (430)
|. .+...+++++.||.+++=.+....... +.... .|.++|..++..|+..+ +.+|.|+.+.-+|++...
T Consensus 195 P~-----s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~---~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~ 266 (559)
T KOG1334|consen 195 PF-----SGDRTIVTSSRDGQVRVSEILETGYVENTKRLA---PHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDV 266 (559)
T ss_pred CC-----CCCcCceeccccCceeeeeeccccceecceecc---cccCccceeeecCCCCCcccccccccceeeeeeccCC
Confidence 84 456679999999999987765433222 22211 23347888888888744 337799999999998754
Q ss_pred CcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCcee------eEEeec------cccCeEEEEE
Q 014125 206 RDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL------LYVLHG------QEGGVTHVQF 273 (430)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~------~~~~~~------~~~~i~~~~~ 273 (430)
...... .........-....++.+|...+.+++|+.|..+++||.+.-.. +..+-. ..-.|++++|
T Consensus 267 pa~~~~--cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Y 344 (559)
T KOG1334|consen 267 PAEKFV--CREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVY 344 (559)
T ss_pred ccceee--eeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEe
Confidence 433222 11111111236789999998888999999999999999875321 222221 2346999999
Q ss_pred ccCCCEEEEEecCCCeEEEEeCCCCce-----------EEEEeecccCCc--cceEEEEE-cCCCCEEEEEccCCcEEEE
Q 014125 274 SRDGNYLYTGGRKDPYILCWDLRKAVQ-----------VVYKLYRSSEHT--NQRILFDI-EPSGRHLGTGGQDGLVHIY 339 (430)
Q Consensus 274 ~~~~~~l~~~~~~d~~i~i~d~~~~~~-----------~~~~~~~~~~~~--~~v~~~~~-~~~~~~l~~~~~dg~i~vw 339 (430)
+.++.-|+++- .|-.|++|.-..+.- .....+ .+|. ..|..+-| -|...|+++|+.-|.|.||
T Consensus 345 sh~~sElLaSY-nDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vY--KGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW 421 (559)
T KOG1334|consen 345 SHDGSELLASY-NDEDIYLFNKSMGDGSEPDPSSPREQYVKRVY--KGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIW 421 (559)
T ss_pred cCCccceeeee-cccceEEeccccccCCCCCCCcchhhccchhh--cccccccccceeeeccCccceEEecCccceEEEE
Confidence 98887777777 799999995432211 111112 3443 34555554 5778999999999999999
Q ss_pred EcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeecC
Q 014125 340 DLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDD 382 (430)
Q Consensus 340 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~ 382 (430)
+-.+++.+..+.+....|+||.-||.-++||+++-|..|+||.
T Consensus 422 ~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWT 464 (559)
T KOG1334|consen 422 DKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWT 464 (559)
T ss_pred ecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeec
Confidence 9999999999998888999999999999999998877777773
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.8e-21 Score=159.29 Aligned_cols=288 Identities=14% Similarity=0.188 Sum_probs=198.7
Q ss_pred CCceeEEEECcCCc-eEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCC
Q 014125 60 NNFLKGIKWSPDGS-SFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS 138 (430)
Q Consensus 60 ~~~v~~~~~sp~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 138 (430)
..+|.++.|.++.. .||||+.|..|+||.+......... ..-.-......|...|+++.| +|+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~--------~~V~y~s~Ls~H~~aVN~vRf-------~p~g 77 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD--------MKVEYLSSLSRHTRAVNVVRF-------SPDG 77 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc--------eeEEEeecccCCcceeEEEEE-------cCCc
Confidence 45799999998765 9999999999999998755322110 001112234568889999999 7799
Q ss_pred ceEEEEeCCCcEEEEeccCC----------------ceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEc
Q 014125 139 CVFASTTRDHPIHLWDATTG----------------LLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDV 201 (430)
Q Consensus 139 ~~l~~~~~dg~i~vwd~~~~----------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~ 201 (430)
.+|++|+.+|.|.+|....- .....+.. |...|+.++|+|++.+++++ .|+.+++||+
T Consensus 78 elLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~-----h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv 152 (434)
T KOG1009|consen 78 ELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRG-----HRDDIYDLAWSPDSNFLVSGSVDNSVRLWDV 152 (434)
T ss_pred CeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecc-----cccchhhhhccCCCceeeeeeccceEEEEEe
Confidence 99999999999999987611 11122222 33489999999999999955 8999999999
Q ss_pred CCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEee-------------------
Q 014125 202 HRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH------------------- 262 (430)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~------------------- 262 (430)
..+ .+......|...+..++|.| ...++++-+.|...+.+++...+.+....
T Consensus 153 ~~G--------~l~~~~~dh~~yvqgvawDp-l~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rL 223 (434)
T KOG1009|consen 153 HAG--------QLLAILDDHEHYVQGVAWDP-LNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRL 223 (434)
T ss_pred ccc--------eeEeeccccccccceeecch-hhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeee
Confidence 873 44455678889999999999 77788888888877776655433221111
Q ss_pred ccc----cCeEEEEEccCCCEEEEEec---CC-----CeEEEEeCCCCceEEEEeecccCCccceEEEEEcC--------
Q 014125 263 GQE----GGVTHVQFSRDGNYLYTGGR---KD-----PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEP-------- 322 (430)
Q Consensus 263 ~~~----~~i~~~~~~~~~~~l~~~~~---~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------- 322 (430)
-|. .-...++|+|+|..+++.++ .+ +..++|+-....++...+ .....+...+.|+|
T Consensus 224 fhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~l---p~~~k~~lavr~~pVy~elrp~ 300 (434)
T KOG1009|consen 224 FHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARL---PSPKKPALAVRFSPVYYELRPL 300 (434)
T ss_pred eecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeec---CCCCcceEEEEeeeeEEEeccc
Confidence 011 12456889999998887541 11 223455443333332222 33344455555554
Q ss_pred ----------CCCEEEEEccCCcEEEEEcCCCCeecccc-cccCCeeEEEEcCCCcEEEEeeCCceeee
Q 014125 323 ----------SGRHLGTGGQDGLVHIYDLQTGKWISGFQ-AAADTVNGFSFHPFLPMAASSSGHRRFPV 380 (430)
Q Consensus 323 ----------~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~~~v 380 (430)
.+..+|.++. +.|+|||..+-+++.... -|-..|+.++|+++|..|+.+|.||-..+
T Consensus 301 ~~~~~~~~lpyrlvfaiAt~-~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~ 368 (434)
T KOG1009|consen 301 SSEKFLFVLPYRLVFAIATK-NSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSL 368 (434)
T ss_pred cccccccccccceEEEEeec-ceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEE
Confidence 2334556655 479999999988877653 58889999999999999999998775544
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.7e-21 Score=168.34 Aligned_cols=270 Identities=11% Similarity=0.211 Sum_probs=207.1
Q ss_pred ceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceE
Q 014125 62 FLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF 141 (430)
Q Consensus 62 ~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 141 (430)
.|..++|-|||..|+.+..+ .+.+||..++.+...++.+ ...|++++| +.+|+.+
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llqtLKgH-----------------KDtVycVAy-------s~dGkrF 68 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPLKGH-----------------KDTVYCVAY-------AKDGKRF 68 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeCCCcccccccccc-----------------cceEEEEEE-------ccCCcee
Confidence 69999999999988877665 7999999988776665554 489999999 8899999
Q ss_pred EEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccCCCCCC
Q 014125 142 ASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQ 221 (430)
Q Consensus 142 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~ 221 (430)
++|+.|..|.+|...-... ++. .|...|.|+.|+|-...++++.=...-+|...... ..+ ...
T Consensus 69 ASG~aDK~VI~W~~klEG~---LkY----SH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~--------V~K--~ks 131 (1081)
T KOG1538|consen 69 ASGSADKSVIIWTSKLEGI---LKY----SHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKS--------VSK--HKS 131 (1081)
T ss_pred ccCCCceeEEEecccccce---eee----ccCCeeeEeecCchHHHhhhcchhhccccChhhhh--------HHh--hhh
Confidence 9999999999998643322 221 23348999999999999997665667788775421 111 122
Q ss_pred CcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEee---ccccCeEEEEEccCC-----CEEEEEecCCCeEEEE
Q 014125 222 AGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH---GQEGGVTHVQFSRDG-----NYLYTGGRKDPYILCW 293 (430)
Q Consensus 222 ~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~---~~~~~i~~~~~~~~~-----~~l~~~~~~d~~i~i~ 293 (430)
...+.+++|.. ++.+++.|-.+|+|.+-+-. ++....++ +...+|.+++|+|.. ..+++.. ...++.+|
T Consensus 132 s~R~~~CsWtn-DGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~D-W~qTLSFy 208 (1081)
T KOG1538|consen 132 SSRIICCSWTN-DGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVAD-WGQTLSFY 208 (1081)
T ss_pred heeEEEeeecC-CCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEe-ccceeEEE
Confidence 35688999998 67799999999999998654 44333333 356799999999963 3577777 78888888
Q ss_pred eCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEee
Q 014125 294 DLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSS 373 (430)
Q Consensus 294 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 373 (430)
.+.... . .....-.-...|+++-|+|.+++.|+.|+.+.+|- +.|-.+.++......|+.++.+|++++++.|+
T Consensus 209 ~LsG~~-I----gk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GC 282 (1081)
T KOG1538|consen 209 QLSGKQ-I----GKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGC 282 (1081)
T ss_pred Eeccee-e----cccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEE
Confidence 776531 1 11122334456788999999999999999999996 55777777777778999999999999999999
Q ss_pred CCceeeecC
Q 014125 374 GHRRFPVDD 382 (430)
Q Consensus 374 ~d~~~~vw~ 382 (430)
.||++.-++
T Consensus 283 qDGTiACyN 291 (1081)
T KOG1538|consen 283 QDGTIACYN 291 (1081)
T ss_pred ccCeeehhh
Confidence 999998774
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-21 Score=156.90 Aligned_cols=278 Identities=12% Similarity=0.123 Sum_probs=189.8
Q ss_pred ceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEE
Q 014125 73 SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHL 152 (430)
Q Consensus 73 ~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~v 152 (430)
..+|++-..|+|++||..+++....++.+. ..+..++|.. ......+.+|+.||+|++
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~-----------------~~~N~vrf~~-----~ds~h~v~s~ssDG~Vr~ 98 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPP-----------------ATTNGVRFIS-----CDSPHGVISCSSDGTVRL 98 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCC-----------------CcccceEEec-----CCCCCeeEEeccCCeEEE
Confidence 578888889999999999987766655544 4555666632 114567999999999999
Q ss_pred EeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-----cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEE
Q 014125 153 WDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-----YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSA 227 (430)
Q Consensus 153 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-----~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~ 227 (430)
||++.......+...... ..+..+++.+-.+..+++| .+-.|.+||++..... +......|...|++
T Consensus 99 wD~Rs~~e~a~~~~~~~~--~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~------l~~~~eSH~DDVT~ 170 (376)
T KOG1188|consen 99 WDIRSQAESARISWTQQS--GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQL------LRQLNESHNDDVTQ 170 (376)
T ss_pred EEeecchhhhheeccCCC--CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccch------hhhhhhhccCccee
Confidence 999987665555443321 1255677766677788865 4678999999875432 33445788999999
Q ss_pred EEEcCCCCceEEEecCCCeEEEEEcCCce---eeEEeeccccCeEEEEEccCC-CEEEEEecCCCeEEEEeCCCCceEEE
Q 014125 228 IAFSPTHTGMLAIGSYSQTSAIYREDNME---LLYVLHGQEGGVTHVQFSRDG-NYLYTGGRKDPYILCWDLRKAVQVVY 303 (430)
Q Consensus 228 ~~~~~~~~~~l~~~~~dg~v~~~d~~~~~---~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~d~~i~i~d~~~~~~~~~ 303 (430)
+.|+|.+.++|++|+.||-|.+||+.... .+...-.|...|.++.|..++ +.|.+-+ ......+|+++.+.....
T Consensus 171 lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clT-H~Etf~~~ele~~~~~~~ 249 (376)
T KOG1188|consen 171 LRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLT-HMETFAIYELEDGSEETW 249 (376)
T ss_pred EEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEE-ccCceeEEEccCCChhhc
Confidence 99999999999999999999999987542 222222377789999998776 4577777 899999999988753321
Q ss_pred Eeecc---------cCCccceEEEEEcCCCCEEEEEcc-CCcEEEEEcC---C---CCeeccccc-ccCCeeEEEEcCCC
Q 014125 304 KLYRS---------SEHTNQRILFDIEPSGRHLGTGGQ-DGLVHIYDLQ---T---GKWISGFQA-AADTVNGFSFHPFL 366 (430)
Q Consensus 304 ~~~~~---------~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~---~---~~~~~~~~~-~~~~v~~~~~~~~~ 366 (430)
+... ...-..+...-...++...+.++. -|...++-+. + .+.+..+.+ |..-|+++.|...+
T Consensus 250 -~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~ 328 (376)
T KOG1188|consen 250 -LENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKN 328 (376)
T ss_pred -ccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhccc
Confidence 1110 001111211111223344444444 5666665544 2 344556665 66689999999888
Q ss_pred cEEEEeeCCceeeecC
Q 014125 367 PMAASSSGHRRFPVDD 382 (430)
Q Consensus 367 ~~l~s~~~d~~~~vw~ 382 (430)
.++.||+.||.+.+|.
T Consensus 329 ~~l~TGGEDG~l~~Wk 344 (376)
T KOG1188|consen 329 DVLYTGGEDGLLQAWK 344 (376)
T ss_pred ceeeccCCCceEEEEe
Confidence 8888888766666664
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-21 Score=156.31 Aligned_cols=256 Identities=15% Similarity=0.221 Sum_probs=191.4
Q ss_pred cCCCceeEEEECcC----CceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCc
Q 014125 58 IPNNFLKGIKWSPD----GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (430)
Q Consensus 58 ~h~~~v~~~~~sp~----~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (430)
.|......++|+-| ..+||.||.-|.|+|.|+.+++... ...+|+..|..+.++|.
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~-----------------~~~ghG~sINeik~~p~--- 146 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSK-----------------NYRGHGGSINEIKFHPD--- 146 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhcc-----------------ceeccCccchhhhcCCC---
Confidence 47777888999764 3489999999999999998765432 34568899999999875
Q ss_pred cCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCc-----
Q 014125 134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRD----- 207 (430)
Q Consensus 134 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~----- 207 (430)
..+++++++.|..|++|++++..++..+.+.. +|...|.++.|++++.+|+ +|.|.+|++|++..+.-.
T Consensus 147 ---~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~e--gHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~ 221 (385)
T KOG1034|consen 147 ---RPQLVLSASKDHSVRLWNIQTDVCVAVFGGVE--GHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLEL 221 (385)
T ss_pred ---CCcEEEEecCCceEEEEeccCCeEEEEecccc--cccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhh
Confidence 44699999999999999999999999987755 4666999999999999999 669999999999842110
Q ss_pred ---------ccccccccC------CCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCC-c-------------eee
Q 014125 208 ---------FEKYSTLKG------NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN-M-------------ELL 258 (430)
Q Consensus 208 ---------~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~-~-------------~~~ 258 (430)
...+..... ...-|...|-|+.|- ++++++-+.++.|..|.... . ..+
T Consensus 222 s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~---gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~ 298 (385)
T KOG1034|consen 222 SITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF---GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTIL 298 (385)
T ss_pred hcccCCCCccCcCCccccccccccccccccchHHHHHHH---hhheeecccCceEEEEecchhhhhhhccCCCccceeee
Confidence 000101000 224466777777774 35888888899999997621 1 122
Q ss_pred EEeeccccCeEEEE--EccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcE
Q 014125 259 YVLHGQEGGVTHVQ--FSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLV 336 (430)
Q Consensus 259 ~~~~~~~~~i~~~~--~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 336 (430)
..+.-....|.-+. |+|.++.|+.+. ..|.|.+||++..................|...+|+.||..|+...+|++|
T Consensus 299 ~~~~~~~c~iWfirf~~d~~~~~la~gn-q~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~V 377 (385)
T KOG1034|consen 299 GEFDYPMCDIWFIRFAFDPWQKMLALGN-QSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTV 377 (385)
T ss_pred eEeccCccceEEEEEeecHHHHHHhhcc-CCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcE
Confidence 33333344555554 567788999998 999999999998765433333334456779999999999999999999999
Q ss_pred EEEEcC
Q 014125 337 HIYDLQ 342 (430)
Q Consensus 337 ~vwd~~ 342 (430)
.-||..
T Consensus 378 wrwdrv 383 (385)
T KOG1034|consen 378 WRWDRV 383 (385)
T ss_pred EEEEee
Confidence 999854
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-20 Score=168.28 Aligned_cols=274 Identities=14% Similarity=0.121 Sum_probs=196.8
Q ss_pred CeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCce-
Q 014125 82 KTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLL- 160 (430)
Q Consensus 82 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~- 160 (430)
+.+.||++... ......+.....|.+++|+|. +..+++.|..+|+|.+||+..+..
T Consensus 222 ~~~~vW~~~~p-----------------~~Pe~~~~~~s~v~~~~f~p~------~p~ll~gG~y~GqV~lWD~~~~~~~ 278 (555)
T KOG1587|consen 222 GVLLVWSLKNP-----------------NTPELVLESPSEVTCLKFCPF------DPNLLAGGCYNGQVVLWDLRKGSDT 278 (555)
T ss_pred ceEEEEecCCC-----------------CCceEEEecCCceeEEEeccC------CcceEEeeccCceEEEEEccCCCCC
Confidence 46889988753 234455566689999999886 556899999999999999988765
Q ss_pred -eeeeecccccccccceEEEEECCCCc---EEEEEcCCeEEEEEcCCCCCcccccccc----cCCCCCCCcceEEEEEcC
Q 014125 161 -RCTYRAYDAVDEITAAFSVAFNPTGT---KIFAGYNKSVRVFDVHRPGRDFEKYSTL----KGNKEGQAGIMSAIAFSP 232 (430)
Q Consensus 161 -~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~~d~~i~v~d~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~ 232 (430)
...+.... ..|..++..+.|..+.. ++.++.||.|..|+++.-..+......- ..........+++++|.+
T Consensus 279 ~~s~ls~~~-~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~ 357 (555)
T KOG1587|consen 279 PPSGLSALE-VSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEP 357 (555)
T ss_pred CCccccccc-ccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeecc
Confidence 33333322 24556889999976543 4446799999999887533322111000 011113345689999999
Q ss_pred CCCceEEEecCCCeEEEEEcCCce--------eeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEE
Q 014125 233 THTGMLAIGSYSQTSAIYREDNME--------LLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYK 304 (430)
Q Consensus 233 ~~~~~l~~~~~dg~v~~~d~~~~~--------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~ 304 (430)
...+.+++|+++|.|.--+....+ ....+..|.++|+++.++|-+..++.++ .|-+++||.......+.
T Consensus 358 ~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~-gDW~vriWs~~~~~~Pl-- 434 (555)
T KOG1587|consen 358 TDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSV-GDWTVRIWSEDVIASPL-- 434 (555)
T ss_pred CCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeee-ccceeEeccccCCCCcc--
Confidence 899999999999999874332221 2334556889999999999988887777 69999999987333332
Q ss_pred eecccCCccceEEEEEcCCC-CEEEEEccCCcEEEEEcCC--CCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeec
Q 014125 305 LYRSSEHTNQRILFDIEPSG-RHLGTGGQDGLVHIYDLQT--GKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVD 381 (430)
Q Consensus 305 ~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw 381 (430)
.....+...+++++|||.. ..++++..||.|.+||+.. ..++...+.+....+.+.|++.|+.|+.|...|.+.++
T Consensus 435 -~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~ 513 (555)
T KOG1587|consen 435 -LSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHIL 513 (555)
T ss_pred -hhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEE
Confidence 2224566679999999976 4677888899999999974 45566666566677888999999999999977666666
Q ss_pred CC
Q 014125 382 DF 383 (430)
Q Consensus 382 ~~ 383 (430)
+.
T Consensus 514 ~l 515 (555)
T KOG1587|consen 514 KL 515 (555)
T ss_pred Ec
Confidence 55
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=8e-22 Score=166.53 Aligned_cols=221 Identities=18% Similarity=0.234 Sum_probs=179.5
Q ss_pred eEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEE
Q 014125 64 KGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFAS 143 (430)
Q Consensus 64 ~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 143 (430)
.|++......|+++||..+.|+|||+...... .....|...|+++.| +-...+||+
T Consensus 83 ~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~h-----------------r~lkdh~stvt~v~Y-------N~~DeyiAs 138 (673)
T KOG4378|consen 83 FCVACASQSLYEISGGQSGCVKIWDLRAKLIH-----------------RFLKDHQSTVTYVDY-------NNTDEYIAS 138 (673)
T ss_pred HHHhhhhcceeeeccCcCceeeehhhHHHHHh-----------------hhccCCcceeEEEEe-------cCCcceeEE
Confidence 33433334479999999999999999843322 233345589999999 557889999
Q ss_pred EeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE--EEcCCeEEEEEcCCCCCcccccccccCCCCCC
Q 014125 144 TTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF--AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQ 221 (430)
Q Consensus 144 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~ 221 (430)
++..|.|.|..+.++.....+...... .|.-+.|+|..++++ ++.+|.|.+||+....+ .......|
T Consensus 139 vs~gGdiiih~~~t~~~tt~f~~~sgq----svRll~ys~skr~lL~~asd~G~VtlwDv~g~sp-------~~~~~~~H 207 (673)
T KOG4378|consen 139 VSDGGDIIIHGTKTKQKTTTFTIDSGQ----SVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSP-------IFHASEAH 207 (673)
T ss_pred eccCCcEEEEecccCccccceecCCCC----eEEEeecccccceeeEeeccCCeEEEEeccCCCc-------ccchhhhc
Confidence 999999999999999887777765431 567899999998887 56899999999976422 22334678
Q ss_pred CcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceE
Q 014125 222 AGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQV 301 (430)
Q Consensus 222 ~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~ 301 (430)
..+...++|+|.+..+|++.+.|..|.+||.+..+....+. ...+...++|.++|.+|++|. ..|.|..||++..+.+
T Consensus 208 sAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~-s~G~~i~YD~R~~k~P 285 (673)
T KOG4378|consen 208 SAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGN-SKGELIAYDMRSTKAP 285 (673)
T ss_pred cCCcCcceecCCccceEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeec-CCceEEEEecccCCCC
Confidence 89999999999889999999999999999999777666665 567899999999999999999 9999999999998777
Q ss_pred EEEeecccCCccceEEEEEcCCC
Q 014125 302 VYKLYRSSEHTNQRILFDIEPSG 324 (430)
Q Consensus 302 ~~~~~~~~~~~~~v~~~~~~~~~ 324 (430)
+... ..|...|++++|-|..
T Consensus 286 v~v~---sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 286 VAVR---SAHDASVTRVAFQPSP 305 (673)
T ss_pred ceEe---eecccceeEEEeeecc
Confidence 6555 6788889999998764
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.7e-21 Score=150.25 Aligned_cols=266 Identities=17% Similarity=0.181 Sum_probs=192.5
Q ss_pred eecccCCCceeEEEECc-CCceEEEecCC-------CeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeee
Q 014125 54 RTSSIPNNFLKGIKWSP-DGSSFLTSSED-------KTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDF 125 (430)
Q Consensus 54 ~~~~~h~~~v~~~~~sp-~~~~l~s~~~d-------g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 125 (430)
+++..|.+.|..++-+| +.+.|+|+..+ ..+.||.++...-...... ......+...+-+.|.|+
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~t-------lE~v~~Ldteavg~i~cv 129 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSST-------LECVASLDTEAVGKINCV 129 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccch-------hhHhhcCCHHHhCceeeE
Confidence 57788999999999999 56677776542 2478999875432111000 001111222233589999
Q ss_pred eeccccCccCCCCceEEEEeCCCcEEEEeccCCce-eeeeecccccccccceEEEEECC--CCcEEEEEcCCeEEEEEcC
Q 014125 126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLL-RCTYRAYDAVDEITAAFSVAFNP--TGTKIFAGYNKSVRVFDVH 202 (430)
Q Consensus 126 ~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~d~~i~v~d~~ 202 (430)
.| .|++..+++-. |..|.+|++..+.. +..+......++....++-+|+| ++..+++..|+++..||++
T Consensus 130 ew-------~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~R 201 (370)
T KOG1007|consen 130 EW-------EPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLR 201 (370)
T ss_pred EE-------cCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEcc
Confidence 99 45677787766 77899999988766 55555544444455677889998 6788888999999999998
Q ss_pred CCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCc-eeeEEeeccccCeEEEEEccCCC-EE
Q 014125 203 RPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-ELLYVLHGQEGGVTHVQFSRDGN-YL 280 (430)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~-~l 280 (430)
+... .......|...+..+.|+|+...+|++++.||.|++||.+.. .++..+.+|...|.++.|+|... +|
T Consensus 202 T~~~-------~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLi 274 (370)
T KOG1007|consen 202 TMKK-------NNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLI 274 (370)
T ss_pred chhh-------hcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEE
Confidence 7432 223346788889999999988899999999999999999865 57889999999999999999755 55
Q ss_pred EEEecCCCeEEEEeCCCCce--------------------E-----EEEeecccCCccceEEEEEcCCCCE-EEEEccCC
Q 014125 281 YTGGRKDPYILCWDLRKAVQ--------------------V-----VYKLYRSSEHTNQRILFDIEPSGRH-LGTGGQDG 334 (430)
Q Consensus 281 ~~~~~~d~~i~i~d~~~~~~--------------------~-----~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg 334 (430)
++++ .|..|.+|....-.. . -..+.....|...|++++||.-..+ +|+-+.||
T Consensus 275 Ls~~-SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDG 353 (370)
T KOG1007|consen 275 LSGG-SDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDG 353 (370)
T ss_pred EecC-CCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCc
Confidence 5566 999999996542110 0 0012233568899999999976554 67889999
Q ss_pred cEEEEEcC
Q 014125 335 LVHIYDLQ 342 (430)
Q Consensus 335 ~i~vwd~~ 342 (430)
++.|=.+.
T Consensus 354 RviIs~V~ 361 (370)
T KOG1007|consen 354 RVIISSVP 361 (370)
T ss_pred eEEeecCC
Confidence 99886654
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-20 Score=168.89 Aligned_cols=265 Identities=19% Similarity=0.178 Sum_probs=190.3
Q ss_pred CCceeEEEECc-CCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCC
Q 014125 60 NNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS 138 (430)
Q Consensus 60 ~~~v~~~~~sp-~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 138 (430)
...|+|+.|+| +..+||.|..+|.|.+||+..+.... ..........|..++..+.|.. ++.+
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~-----------~s~ls~~~~sh~~~v~~vvW~~-----~~~~ 305 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP-----------PSGLSALEVSHSEPVTAVVWLQ-----NEHN 305 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC-----------CcccccccccCCcCeEEEEEec-----cCCC
Confidence 56799999999 67788999999999999998764421 1233345567888999999976 3444
Q ss_pred ceEEEEeCCCcEEEEeccCCceee-ee----ec--ccccccccceEEEEECCCC--cEEEEEcCCeEEEEEcCCCCCccc
Q 014125 139 CVFASTTRDHPIHLWDATTGLLRC-TY----RA--YDAVDEITAAFSVAFNPTG--TKIFAGYNKSVRVFDVHRPGRDFE 209 (430)
Q Consensus 139 ~~l~~~~~dg~i~vwd~~~~~~~~-~~----~~--~~~~~~~~~v~~~~~~~~~--~~l~~~~d~~i~v~d~~~~~~~~~ 209 (430)
.-|++++.||.|..|+++.-.... .. .. .........+++++|.+.. .+++++.+|.|..-+-........
T Consensus 306 ~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~ 385 (555)
T KOG1587|consen 306 TEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPE 385 (555)
T ss_pred CceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccc
Confidence 679999999999999876432211 11 11 0111223478899998865 344455888887744332222221
Q ss_pred ccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcC-CceeeEEeeccccCeEEEEEccCCCEEEEEecCCC
Q 014125 210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED-NMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDP 288 (430)
Q Consensus 210 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~ 288 (430)
...........|.++|+++.++|....++++++ |.+|++|... ...++..+..+...+++++|||....++++...||
T Consensus 386 ~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G 464 (555)
T KOG1587|consen 386 VSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDG 464 (555)
T ss_pred ccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCC
Confidence 222333345678899999999998887777777 9999999988 66777777777788999999998877666665899
Q ss_pred eEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCC
Q 014125 289 YILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQT 343 (430)
Q Consensus 289 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 343 (430)
.|.+||+......... .........+.+.|++.|+.|++|...|.+++|++..
T Consensus 465 ~l~iWDLl~~~~~Pv~--s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 465 NLDIWDLLQDDEEPVL--SQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred ceehhhhhccccCCcc--cccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 9999999865433211 1122356677888999999999999999999999963
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.4e-19 Score=156.43 Aligned_cols=279 Identities=14% Similarity=0.209 Sum_probs=175.0
Q ss_pred EEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEe-CCCcEEEE
Q 014125 75 FLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTT-RDHPIHLW 153 (430)
Q Consensus 75 l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~vw 153 (430)
+++...++.|++|++.+.... .........+....+++ +|++++|++++ .++.|.+|
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l---------------~~~~~~~~~~~~~~l~~-------spd~~~lyv~~~~~~~i~~~ 62 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGAL---------------TLLQVVDVPGQVQPMVI-------SPDKRHLYVGVRPEFRVLSY 62 (330)
T ss_pred EEEcCCCCCEEEEEECCCCce---------------eeeeEEecCCCCccEEE-------CCCCCEEEEEECCCCcEEEE
Confidence 344467899999999642110 00011112233444555 78899887664 57889999
Q ss_pred eccC-CceeeeeecccccccccceEEEEECCCCcEEEEE--cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEE
Q 014125 154 DATT-GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG--YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAF 230 (430)
Q Consensus 154 d~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 230 (430)
++.. ++.. ....... ......++++|++++++++ .++.|.+|+++..+......... .+......+++
T Consensus 63 ~~~~~g~l~-~~~~~~~---~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-----~~~~~~~~~~~ 133 (330)
T PRK11028 63 RIADDGALT-FAAESPL---PGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII-----EGLEGCHSANI 133 (330)
T ss_pred EECCCCceE-EeeeecC---CCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec-----cCCCcccEeEe
Confidence 9973 3321 1111111 1145689999999988854 58999999997533221111111 11233567889
Q ss_pred cCCCCceEEEecCCCeEEEEEcCCceeeE-------EeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCC--c-e
Q 014125 231 SPTHTGMLAIGSYSQTSAIYREDNMELLY-------VLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKA--V-Q 300 (430)
Q Consensus 231 ~~~~~~~l~~~~~dg~v~~~d~~~~~~~~-------~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~--~-~ 300 (430)
+|++..++++...++.|.+||+.+...+. ... .......++|+|+|++++++...++.|.+|++... . .
T Consensus 134 ~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~ 212 (330)
T PRK11028 134 DPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIE 212 (330)
T ss_pred CCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEE
Confidence 99666566677778999999997643221 111 12346789999999999998845999999999742 1 1
Q ss_pred EEEEeeccc---CCccceEEEEEcCCCCEEEEEcc-CCcEEEEEcCCCCeeccccccc---CCeeEEEEcCCCcEEEEee
Q 014125 301 VVYKLYRSS---EHTNQRILFDIEPSGRHLGTGGQ-DGLVHIYDLQTGKWISGFQAAA---DTVNGFSFHPFLPMAASSS 373 (430)
Q Consensus 301 ~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~s~~ 373 (430)
....+.... .+......+.++|+|++++++.. ++.|.+|++........+.++. .....+.++|+|++|+++.
T Consensus 213 ~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~ 292 (330)
T PRK11028 213 CVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAG 292 (330)
T ss_pred EEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEE
Confidence 111111111 11223346889999999998864 6889999996543222222221 2457899999999999876
Q ss_pred CCceeeecCCCccccccCCCcEEEEeec
Q 014125 374 GHRRFPVDDFEDLHLSGDENCVSVWSFL 401 (430)
Q Consensus 374 ~d~~~~vw~~~~l~~~~~d~~i~~w~~~ 401 (430)
. .+++|.+|++.
T Consensus 293 ~----------------~~~~v~v~~~~ 304 (330)
T PRK11028 293 Q----------------KSHHISVYEID 304 (330)
T ss_pred c----------------cCCcEEEEEEc
Confidence 4 36778888775
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.8e-22 Score=182.67 Aligned_cols=253 Identities=18% Similarity=0.268 Sum_probs=189.6
Q ss_pred ceeEEEECcCCce----EEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCC
Q 014125 62 FLKGIKWSPDGSS----FLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT 137 (430)
Q Consensus 62 ~v~~~~~sp~~~~----l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 137 (430)
.-+.++|.+.|.. ||.|..||.|.+||...-.. ............|.+.|..+.|++. .
T Consensus 66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~-----------~~~~~~la~~~~h~G~V~gLDfN~~------q 128 (1049)
T KOG0307|consen 66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIA-----------NASEEVLATKSKHTGPVLGLDFNPF------Q 128 (1049)
T ss_pred cceeeeecccCCCccceeeccccCCceEEecchhhcc-----------CcchHHHhhhcccCCceeeeecccc------C
Confidence 3678999987665 88999999999999875210 1112223344567789999999663 4
Q ss_pred CceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-E-cCCeEEEEEcCCCCCccccccccc
Q 014125 138 SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-G-YNKSVRVFDVHRPGRDFEKYSTLK 215 (430)
Q Consensus 138 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~-~d~~i~v~d~~~~~~~~~~~~~~~ 215 (430)
+++||+|+.||.|.|||+..-+.-.... .......|.+++|+..-.+|++ + .+|.+.|||++........
T Consensus 129 ~nlLASGa~~geI~iWDlnn~~tP~~~~---~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~l----- 200 (1049)
T KOG0307|consen 129 GNLLASGADDGEILIWDLNKPETPFTPG---SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKL----- 200 (1049)
T ss_pred CceeeccCCCCcEEEeccCCcCCCCCCC---CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCccccc-----
Confidence 5699999999999999998754433332 1223348999999988776663 3 7789999999875322111
Q ss_pred CCCCCCCcceEEEEEcCCCCceEEEecCCC---eEEEEEcCCc-eeeEEeeccccCeEEEEEccCC-CEEEEEecCCCeE
Q 014125 216 GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ---TSAIYREDNM-ELLYVLHGQEGGVTHVQFSRDG-NYLYTGGRKDPYI 290 (430)
Q Consensus 216 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---~v~~~d~~~~-~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~d~~i 290 (430)
...+....+..++|+|++...+++++.|. .|.+||+|.- .+++.+.+|...|.++.|++.+ .+|++++ .|+.|
T Consensus 201 -s~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsg-kD~~i 278 (1049)
T KOG0307|consen 201 -SDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSG-KDNRI 278 (1049)
T ss_pred -ccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhccc-CCCCe
Confidence 11122245889999999888888888764 5999998864 5677888999999999999977 6777777 99999
Q ss_pred EEEeCCCCceEEEEeecccCCccceEEEEEcCCCC-EEEEEccCCcEEEEEcCCCC
Q 014125 291 LCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGR-HLGTGGQDGLVHIYDLQTGK 345 (430)
Q Consensus 291 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~ 345 (430)
.+|+.++++. +..+ ....+++..+.|.|... .+++++-||.|.|+.+....
T Consensus 279 i~wN~~tgEv-l~~~---p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 279 ICWNPNTGEV-LGEL---PAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eEecCCCceE-eeec---CCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 9999999743 3232 45678899999999765 78889999999999987654
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-20 Score=161.03 Aligned_cols=218 Identities=17% Similarity=0.265 Sum_probs=155.5
Q ss_pred ceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecccc
Q 014125 52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (430)
Q Consensus 52 ~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (430)
+...+.||.+.|+|+.|+.+|.+|++||.|-.+.|||.-..++ ...+..+|...|.++.|.|
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kl----------------lhsI~TgHtaNIFsvKFvP-- 103 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKL----------------LHSISTGHTANIFSVKFVP-- 103 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcce----------------eeeeecccccceeEEeeec--
Confidence 4457899999999999999999999999999999999864432 3345567888999999999
Q ss_pred CccCCCCceEEEEeCCCcEEEEeccCCc----------eeeeeecccccccccceEEEEECCCCcEEE--EEcCCeEEEE
Q 014125 132 SASDPTSCVFASTTRDHPIHLWDATTGL----------LRCTYRAYDAVDEITAAFSVAFNPTGTKIF--AGYNKSVRVF 199 (430)
Q Consensus 132 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~----------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~~~d~~i~v~ 199 (430)
..+.+++++|..|..|+++|+...+ ....+.. |...|..++-.|++...+ ++.||+|+-+
T Consensus 104 ---~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~c-----ht~rVKria~~p~~PhtfwsasEDGtirQy 175 (758)
T KOG1310|consen 104 ---YTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSC-----HTDRVKRIATAPNGPHTFWSASEDGTIRQY 175 (758)
T ss_pred ---cCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhh-----hhhhhhheecCCCCCceEEEecCCcceeee
Confidence 4567899999999999999997522 1222222 334788888889884443 7799999999
Q ss_pred EcCCCCCccccc--ccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCc--------e----------eeE
Q 014125 200 DVHRPGRDFEKY--STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM--------E----------LLY 259 (430)
Q Consensus 200 d~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~--------~----------~~~ 259 (430)
|++.+-...... ...........-...++..+|....+|++|+.|-..++||.+.. . ++.
T Consensus 176 DiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~ 255 (758)
T KOG1310|consen 176 DIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVR 255 (758)
T ss_pred cccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhh
Confidence 998743221110 00000111222457899999999999999999999999994321 1 111
Q ss_pred Eee-ccc-----------cCeEEEEEccCCCEEEEEecCCCeEEEEeCC
Q 014125 260 VLH-GQE-----------GGVTHVQFSRDGNYLYTGGRKDPYILCWDLR 296 (430)
Q Consensus 260 ~~~-~~~-----------~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~ 296 (430)
.+. +|- ..++-+.|+|+|.-|++.- ....|+++|+.
T Consensus 256 yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~-~gEhVYlfdvn 303 (758)
T KOG1310|consen 256 YFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSW-GGEHVYLFDVN 303 (758)
T ss_pred eecCccccCcccccccceeeeEEEEECCCCcEEEEee-CCeEEEEEeec
Confidence 111 121 1256788999998887776 56688888764
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-20 Score=150.55 Aligned_cols=234 Identities=15% Similarity=0.190 Sum_probs=173.5
Q ss_pred ceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCCccc----c-cccccCCCCCCCcceEEEEEc-------CCCCceEEEe
Q 014125 175 AAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFE----K-YSTLKGNKEGQAGIMSAIAFS-------PTHTGMLAIG 241 (430)
Q Consensus 175 ~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~~----~-~~~~~~~~~~~~~~v~~~~~~-------~~~~~~l~~~ 241 (430)
-...+.|+|||..|++ +.|..+++|++........ . ..............|...+|- | ..+++++.
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP-~t~l~a~s 129 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQP-STNLFAVS 129 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCC-ccceeeec
Confidence 3447899999998885 5899999999865322111 0 000000111223456666665 4 67799999
Q ss_pred cCCCeEEEEEcCCceeeEEeec--ccc---CeEEEEEccCCCEEEEEecCCCeEEEEeC-CCCceEE-EE-ee-cccCCc
Q 014125 242 SYSQTSAIYREDNMELLYVLHG--QEG---GVTHVQFSRDGNYLYTGGRKDPYILCWDL-RKAVQVV-YK-LY-RSSEHT 312 (430)
Q Consensus 242 ~~dg~v~~~d~~~~~~~~~~~~--~~~---~i~~~~~~~~~~~l~~~~~~d~~i~i~d~-~~~~~~~-~~-~~-~~~~~~ 312 (430)
+.+.-|++||.-+++....+.+ |.. ...+++|+|||.+|++|- ...|++||+ |.+.... .. +. ...+..
T Consensus 130 sr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy--krcirvFdt~RpGr~c~vy~t~~~~k~gq~ 207 (406)
T KOG2919|consen 130 SRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY--KRCIRVFDTSRPGRDCPVYTTVTKGKFGQK 207 (406)
T ss_pred cccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc--cceEEEeeccCCCCCCcchhhhhccccccc
Confidence 9999999999999987766653 322 456899999999999874 899999999 4443211 11 11 113446
Q ss_pred cceEEEEEcCCC-CEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeC-CceeeecCCCc-----
Q 014125 313 NQRILFDIEPSG-RHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSG-HRRFPVDDFED----- 385 (430)
Q Consensus 313 ~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-d~~~~vw~~~~----- 385 (430)
+-+.+++|+|-. ..++.|+...++-||.-..+.++..+-+|.+.|+.+.|+++|+.|.+|+. |-.|..||...
T Consensus 208 giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv 287 (406)
T KOG2919|consen 208 GIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPV 287 (406)
T ss_pred ceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchh
Confidence 778999999965 58999999999999999999999999999999999999999999999887 77899995443
Q ss_pred ------------------------cccccCCCcEEEEeecc-cccccccCC
Q 014125 386 ------------------------LHLSGDENCVSVWSFLY-ASMMENADG 411 (430)
Q Consensus 386 ------------------------l~~~~~d~~i~~w~~~~-~~~~~~~~~ 411 (430)
|++++.||.|++||... ++.......
T Consensus 288 ~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~ 338 (406)
T KOG2919|consen 288 YALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGN 338 (406)
T ss_pred hhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccc
Confidence 88888999999999986 543433333
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.3e-19 Score=160.37 Aligned_cols=248 Identities=16% Similarity=0.242 Sum_probs=179.2
Q ss_pred eeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEE
Q 014125 63 LKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFA 142 (430)
Q Consensus 63 v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 142 (430)
-..-.||+|+++++.+..+ .|.||...++.+...+.. |..++..+...|. .+.-.+++
T Consensus 19 ~~~avfSnD~k~l~~~~~~-~V~VyS~~Tg~~i~~l~~-----------------~~a~l~s~~~~~~----~~~~~~~~ 76 (792)
T KOG1963|consen 19 KSPAVFSNDAKFLFLCTGN-FVKVYSTATGECITSLED-----------------HTAPLTSVIVLPS----SENANYLI 76 (792)
T ss_pred ecccccccCCcEEEEeeCC-EEEEEecchHhhhhhccc-----------------ccCccceeeecCC----CccceEEE
Confidence 3445789999999877765 899999998866543333 3467777777663 22236788
Q ss_pred EEeCCCcEEEEeccCCceeeeeeccccccc--------------------------------------------------
Q 014125 143 STTRDHPIHLWDATTGLLRCTYRAYDAVDE-------------------------------------------------- 172 (430)
Q Consensus 143 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-------------------------------------------------- 172 (430)
+++.+|.|++||...+..+.++........
T Consensus 77 ~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~ 156 (792)
T KOG1963|consen 77 VCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDF 156 (792)
T ss_pred EEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhh
Confidence 999999999999988877665543221000
Q ss_pred ---ccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEE
Q 014125 173 ---ITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAI 249 (430)
Q Consensus 173 ---~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~ 249 (430)
...-.++.+++.+.+.....+..+.+|........ .........|...+++.+++| .++++|+|..||.|.+
T Consensus 157 ~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~----~~~~~~~~~Htf~~t~~~~sp-n~~~~Aa~d~dGrI~v 231 (792)
T KOG1963|consen 157 LKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKH----TSSRDITVHHTFNITCVALSP-NERYLAAGDSDGRILV 231 (792)
T ss_pred hhhhcCCccEEEcCCceEEEEEEeeeEEEEEeccccee----eccchhhhhhcccceeEEecc-ccceEEEeccCCcEEE
Confidence 00023444555555555555667777777653311 111122245666789999999 8889999999999999
Q ss_pred EEcCC----ceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCC
Q 014125 250 YREDN----MELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGR 325 (430)
Q Consensus 250 ~d~~~----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 325 (430)
|.--. ......+.-|...|++++|+++|.+|++|| ..|.+.+|.+.++++... ..-.++|..+.++||+.
T Consensus 232 w~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG-~E~VLv~Wq~~T~~kqfL-----PRLgs~I~~i~vS~ds~ 305 (792)
T KOG1963|consen 232 WRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGG-REGVLVLWQLETGKKQFL-----PRLGSPILHIVVSPDSD 305 (792)
T ss_pred EeccccccccccceEEEecccccceeEEecCCceEeecc-cceEEEEEeecCCCcccc-----cccCCeeEEEEEcCCCC
Confidence 96433 234556777889999999999999999999 999999999999864322 34568899999999999
Q ss_pred EEEEEccCCcEEEEEcCC
Q 014125 326 HLGTGGQDGLVHIYDLQT 343 (430)
Q Consensus 326 ~l~~~~~dg~i~vwd~~~ 343 (430)
+.+...+|+.|.+....+
T Consensus 306 ~~sl~~~DNqI~li~~~d 323 (792)
T KOG1963|consen 306 LYSLVLEDNQIHLIKASD 323 (792)
T ss_pred eEEEEecCceEEEEeccc
Confidence 999999999999988743
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.6e-18 Score=158.35 Aligned_cols=317 Identities=27% Similarity=0.455 Sum_probs=230.4
Q ss_pred ecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCC-CcccccccccccccCcccceeeecCCCeeeeeeeccccCc
Q 014125 55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENG-ISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (430)
Q Consensus 55 ~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (430)
....|...+.++.+.+.+..++.++.|+.+.+|+..... ... .+...+...+..+.+.
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~----- 118 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIK----------------SLEGLHDSSVSKLALS----- 118 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEE----------------EEeccCCCceeeEEEE-----
Confidence 567899999999999999999999999999999998653 111 1111111244444441
Q ss_pred cCCCCc-eEEEEeC-CCcEEEEeccC-CceeeeeecccccccccceEEEEECCCCcEEEEE-c-CCeEEEEEcCCCCCcc
Q 014125 134 SDPTSC-VFASTTR-DHPIHLWDATT-GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-Y-NKSVRVFDVHRPGRDF 208 (430)
Q Consensus 134 ~~~~~~-~l~~~~~-dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~-d~~i~v~d~~~~~~~~ 208 (430)
++++. .++..+. |+.+.+|+... ......+..+.. .|..++|+|++..++.+ . ++.+++|++...
T Consensus 119 -~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 188 (466)
T COG2319 119 -SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSE-----SVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG---- 188 (466)
T ss_pred -CCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcc-----cEEEEEECCCCCEEEecCCCCCceEEEEcCCC----
Confidence 22344 4555444 99999999988 666666766655 88899999999877755 3 999999999762
Q ss_pred cccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeE-EeeccccCeEEEEEccCCCEEEEEecCC
Q 014125 209 EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLY-VLHGQEGGVTHVQFSRDGNYLYTGGRKD 287 (430)
Q Consensus 209 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~~d 287 (430)
.......+|...+.+++|+|++...+++++.|+.|++||...+.... .+..|.... ...|+|++..+++++ .|
T Consensus 189 ----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~d 262 (466)
T COG2319 189 ----KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGS-SD 262 (466)
T ss_pred ----ceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEec-CC
Confidence 12222344788999999998554355555999999999988777777 677787775 448999998888787 99
Q ss_pred CeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccc--cccCCeeEEEEcCC
Q 014125 288 PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQ--AAADTVNGFSFHPF 365 (430)
Q Consensus 288 ~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~ 365 (430)
+.+++|+++......... ..|...+.++.|+|++..+++++.|+.+.+|+..+........ .|...+..+.|.++
T Consensus 263 ~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (466)
T COG2319 263 GTIRLWDLRSSSSLLRTL---SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPD 339 (466)
T ss_pred CcEEEeeecCCCcEEEEE---ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCC
Confidence 999999999776522222 4668899999999988888889999889999999887766665 78778999999433
Q ss_pred CcEEEEe-eCCceeeecCCCccc------------------------cccCCCcEEEEeecccccccccCC
Q 014125 366 LPMAASS-SGHRRFPVDDFEDLH------------------------LSGDENCVSVWSFLYASMMENADG 411 (430)
Q Consensus 366 ~~~l~s~-~~d~~~~vw~~~~l~------------------------~~~~d~~i~~w~~~~~~~~~~~~~ 411 (430)
+..++.+ ..|+.+.+|+..... ..+.++.+.+|+............
T Consensus 340 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (466)
T COG2319 340 GSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDG 410 (466)
T ss_pred CCEEEEeecCCCcEEeeecCCCceeEEecCCceEEEEEECCCCCEEEEecCCCceEEEecccCeeeeeccC
Confidence 2455555 577888888433211 134667777777766555444443
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.8e-21 Score=164.39 Aligned_cols=295 Identities=17% Similarity=0.167 Sum_probs=198.9
Q ss_pred ceEEEecCCCeEEEE--eCCCCCCccccccccc---ccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCC
Q 014125 73 SSFLTSSEDKTLRIF--SLPENGISYDVNACSL---AKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRD 147 (430)
Q Consensus 73 ~~l~s~~~dg~v~iw--~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d 147 (430)
+..++...+...++| ++........+..... ..............|...|+.+.| .+....|++++.|
T Consensus 243 ~~~~g~d~~l~~~l~~~tla~l~I~~~~dd~~~~k~a~~k~w~ik~tl~s~~d~ir~l~~-------~~sep~lit~sed 315 (577)
T KOG0642|consen 243 SISVGADEDLMSRLGLGTLAGLTIEDEFDDLSDLKKAFTKKWNIKFTLRSHDDCIRALAF-------HPSEPVLITASED 315 (577)
T ss_pred CccccCchHHHHhhcccchhcccccccccchhhhhhhhheecceeeeeecchhhhhhhhc-------CCCCCeEEEeccc
Confidence 355666667777888 5543332222220000 001111222244556667788887 4456689999999
Q ss_pred CcEEEEeccC--------CceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCcccc--cccccC
Q 014125 148 HPIHLWDATT--------GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEK--YSTLKG 216 (430)
Q Consensus 148 g~i~vwd~~~--------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~--~~~~~~ 216 (430)
|.+.+|++.. -+++.+|..|.. +|.|++..+++..++ +|.||+|+.|++.....+... ...+..
T Consensus 316 ~~lk~WnLqk~~~s~~~~~epi~tfraH~g-----PVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~ 390 (577)
T KOG0642|consen 316 GTLKLWNLQKAKKSAEKDVEPILTFRAHEG-----PVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSG 390 (577)
T ss_pred cchhhhhhcccCCccccceeeeEEEecccC-----ceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhcc
Confidence 9999999932 134556666665 999999999999999 559999999988733222221 134556
Q ss_pred CCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeec--cccCeEEEEEccCC-CEEEEEecCCCeEEEE
Q 014125 217 NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG--QEGGVTHVQFSRDG-NYLYTGGRKDPYILCW 293 (430)
Q Consensus 217 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~--~~~~i~~~~~~~~~-~~l~~~~~~d~~i~i~ 293 (430)
.+.||...+..+++++ ....|++++.||++++|+.....+ ..+.. ..+.-.++.+-... ..+++.. .-+.-.++
T Consensus 391 ~l~Ghtdavw~l~~s~-~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~-~~~~~~~~ 467 (577)
T KOG0642|consen 391 TLLGHTDAVWLLALSS-TKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASF-RFGYTSID 467 (577)
T ss_pred ceeccccceeeeeecc-cccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhc-ccccccch
Confidence 6789999999999999 667899999999999999876655 22221 22334566664433 2233322 34444444
Q ss_pred eCCCCceEEEEeecccC---CccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEE
Q 014125 294 DLRKAVQVVYKLYRSSE---HTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAA 370 (430)
Q Consensus 294 d~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 370 (430)
++.........-..... ....+..+.++|.+.+.+++.+|+.|+++|..+++++.....|...++++++.|+|.+|+
T Consensus 468 ~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~ 547 (577)
T KOG0642|consen 468 DMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLM 547 (577)
T ss_pred hhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEE
Confidence 54443322211111111 124577788999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCceeeecC
Q 014125 371 SSSGHRRFPVDD 382 (430)
Q Consensus 371 s~~~d~~~~vw~ 382 (430)
+++.|+.+++|.
T Consensus 548 s~s~d~sv~l~k 559 (577)
T KOG0642|consen 548 SGSHDGSVRLWK 559 (577)
T ss_pred eecCCceeehhh
Confidence 998655555553
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.9e-20 Score=151.49 Aligned_cols=240 Identities=20% Similarity=0.328 Sum_probs=175.1
Q ss_pred cceeecccCCCceeEEEECc-CCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecc
Q 014125 51 NQFRTSSIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFP 129 (430)
Q Consensus 51 ~~~~~~~~h~~~v~~~~~sp-~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 129 (430)
+.+-...||+++|..++|+| +...||+||.|.+|.||.+..+.+...+.. ......+|...|--++|+|
T Consensus 72 ~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lte----------pvv~L~gH~rrVg~V~wHP 141 (472)
T KOG0303|consen 72 ASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTE----------PVVELYGHQRRVGLVQWHP 141 (472)
T ss_pred CCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCccc----------ceEEEeecceeEEEEeecc
Confidence 44557889999999999999 667999999999999999998766544332 2335667889999999988
Q ss_pred ccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCcc
Q 014125 130 HMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDF 208 (430)
Q Consensus 130 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~ 208 (430)
. ..+.|++++.|.+|.+|++.+|+....+. |. ..|+++.|+.+|.+++ ++.|+.|+|||.+++..
T Consensus 142 t------A~NVLlsag~Dn~v~iWnv~tgeali~l~-hp-----d~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~-- 207 (472)
T KOG0303|consen 142 T------APNVLLSAGSDNTVSIWNVGTGEALITLD-HP-----DMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTV-- 207 (472)
T ss_pred c------chhhHhhccCCceEEEEeccCCceeeecC-CC-----CeEEEEEeccCCceeeeecccceeEEEcCCCCcE--
Confidence 6 34589999999999999999999887766 33 3899999999999999 56999999999988432
Q ss_pred cccccccCCCCCCCc-ceEEEEEcCCCCceEEEec---CCCeEEEEEcCCce---eeEEeeccccCeEEEEEccCCCEEE
Q 014125 209 EKYSTLKGNKEGQAG-IMSAIAFSPTHTGMLAIGS---YSQTSAIYREDNME---LLYVLHGQEGGVTHVQFSRDGNYLY 281 (430)
Q Consensus 209 ~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~---~dg~v~~~d~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~ 281 (430)
.....+|.+ .-..+.|-. ++.++.+|. .+..+-+||...-+ ....+. ....|.---|.++.+.++
T Consensus 208 ------v~e~~~heG~k~~Raifl~-~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivY 279 (472)
T KOG0303|consen 208 ------VSEGVAHEGAKPARAIFLA-SGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVY 279 (472)
T ss_pred ------eeecccccCCCcceeEEec-cCceeeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEE
Confidence 111233432 233444555 444555554 36789999866543 344444 345677778899999999
Q ss_pred EEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCC
Q 014125 282 TGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPS 323 (430)
Q Consensus 282 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 323 (430)
.+|..|+.||-|.+.+....+..+..+ ....+-..+.|-|.
T Consensus 280 l~GKGD~~IRYyEit~d~P~~hyln~f-~S~epQRG~g~mPK 320 (472)
T KOG0303|consen 280 LCGKGDSSIRYFEITNEPPFVHYLNTF-SSKEPQRGMGFMPK 320 (472)
T ss_pred EEecCCcceEEEEecCCCceeEEeccc-ccCCcccccccccc
Confidence 999899999999998875444443322 22334445666654
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.4e-20 Score=159.39 Aligned_cols=180 Identities=16% Similarity=0.210 Sum_probs=142.4
Q ss_pred CcceEEEEEcCCCCceEEEecCCCeEEEEEcCCc-------eeeEEeeccccCeEEEEEccCC-CEEEEEecCCCeEEEE
Q 014125 222 AGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-------ELLYVLHGQEGGVTHVQFSRDG-NYLYTGGRKDPYILCW 293 (430)
Q Consensus 222 ~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~-------~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~d~~i~i~ 293 (430)
...|+.+.|+|.+...|++++.||.|++|.+..+ .+...+..|...|+++.|+|-. ..|++++ .|-+|++|
T Consensus 627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~as-yd~Ti~lW 705 (1012)
T KOG1445|consen 627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVAS-YDSTIELW 705 (1012)
T ss_pred CceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhh-ccceeeee
Confidence 3469999999999999999999999999998754 3456778899999999999964 4566666 99999999
Q ss_pred eCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCC-eecccccccC-CeeEEEEcCCCcEEEE
Q 014125 294 DLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGK-WISGFQAAAD-TVNGFSFHPFLPMAAS 371 (430)
Q Consensus 294 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~-~v~~~~~~~~~~~l~s 371 (430)
|+++..... ...+|...|..++|||+|+.+|+.+.||+|+||..++++ +++.-++..+ .--.|.|.-+|++++.
T Consensus 706 Dl~~~~~~~----~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv 781 (1012)
T KOG1445|consen 706 DLANAKLYS----RLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIV 781 (1012)
T ss_pred ehhhhhhhh----eeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEE
Confidence 999875432 236899999999999999999999999999999988764 3444433322 3356788889998887
Q ss_pred eeCCc----eeeecCCCc-----------------------------cccccCCCcEEEEeecccccc
Q 014125 372 SSGHR----RFPVDDFED-----------------------------LHLSGDENCVSVWSFLYASMM 406 (430)
Q Consensus 372 ~~~d~----~~~vw~~~~-----------------------------l~~~~~d~~i~~w~~~~~~~~ 406 (430)
.+.|. .+.+|+.+. ++++..|..|.+|.+.+....
T Consensus 782 ~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esPy 849 (1012)
T KOG1445|consen 782 VGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESPY 849 (1012)
T ss_pred ecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEecCCCce
Confidence 76653 466663222 677888999999999876653
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.6e-19 Score=158.16 Aligned_cols=306 Identities=14% Similarity=0.166 Sum_probs=210.8
Q ss_pred ceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecccc
Q 014125 52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (430)
Q Consensus 52 ~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (430)
....-..|.-.++|.++||+++++|+|..||.|.+|.--.. ..+.....+.-=|...|.+++|
T Consensus 197 ~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~-------------~~~~~t~t~lHWH~~~V~~L~f---- 259 (792)
T KOG1963|consen 197 SRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGS-------------SDDSETCTLLHWHHDEVNSLSF---- 259 (792)
T ss_pred cchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccc-------------ccccccceEEEecccccceeEE----
Confidence 34455667777999999999999999999999999964321 1112233334445568999999
Q ss_pred CccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCcccc
Q 014125 132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEK 210 (430)
Q Consensus 132 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~ 210 (430)
+++|.+|++|+..|.+.+|.+.+++ .+-++.... +|..+.++||+.+.+ +..|+.|.+......... ..
T Consensus 260 ---S~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs-----~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k-~t 329 (792)
T KOG1963|consen 260 ---SSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGS-----PILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIK-ST 329 (792)
T ss_pred ---ecCCceEeecccceEEEEEeecCCC-cccccccCC-----eeEEEEEcCCCCeEEEEecCceEEEEeccchhhh-hh
Confidence 7899999999999999999999998 334444443 899999999999888 568999999887442111 01
Q ss_pred cccccCC----CCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeec-----------cccCeEEEEEcc
Q 014125 211 YSTLKGN----KEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG-----------QEGGVTHVQFSR 275 (430)
Q Consensus 211 ~~~~~~~----~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~-----------~~~~i~~~~~~~ 275 (430)
+..+... .....+-.+.++++| ..+.++-.+..|.|.+||+-+.+.+..+.. +.-.++.++.+.
T Consensus 330 Isgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~ 408 (792)
T KOG1963|consen 330 ISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSR 408 (792)
T ss_pred ccCccCCCccccccccccceeEEEcC-CCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhc
Confidence 1111111 223455678899999 777888889999999999988766655431 223577888888
Q ss_pred CCCEEEEEec-------CC--CeEEEEeCCCCceEEEE-eecccCCccceEEEEEcC-CCC-EEEEEccCCcEEEEEcCC
Q 014125 276 DGNYLYTGGR-------KD--PYILCWDLRKAVQVVYK-LYRSSEHTNQRILFDIEP-SGR-HLGTGGQDGLVHIYDLQT 343 (430)
Q Consensus 276 ~~~~l~~~~~-------~d--~~i~i~d~~~~~~~~~~-~~~~~~~~~~v~~~~~~~-~~~-~l~~~~~dg~i~vwd~~~ 343 (430)
.|.++++.-- .| -.+++|-.....+.... ......|...+...++.+ ... .+++++.||.++||-+..
T Consensus 409 ~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~ 488 (792)
T KOG1963|consen 409 FGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTD 488 (792)
T ss_pred cceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEec
Confidence 8999888641 23 35778876554332111 111245666555555543 333 789999999999999843
Q ss_pred CC----------eecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCCCccccccCCCcEEEEeeccc
Q 014125 344 GK----------WISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYA 403 (430)
Q Consensus 344 ~~----------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~ 403 (430)
.+ +...-..|..++++++|+.||.+|+.+- |++|.+||+...
T Consensus 489 ~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~------------------~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 489 DSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSF------------------DDTITIWDYDTK 540 (792)
T ss_pred ccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEec------------------CCEEEEecCCCh
Confidence 22 2222224788999999999997776663 567777777663
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3e-20 Score=162.72 Aligned_cols=243 Identities=16% Similarity=0.289 Sum_probs=186.2
Q ss_pred ceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecccc
Q 014125 52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (430)
Q Consensus 52 ~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (430)
+..++++|.+.|+|++|+.||+.+|+|+.|..|.+|+-.- +..+...|+..|.|+.|
T Consensus 45 llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl-------------------EG~LkYSH~D~IQCMsF---- 101 (1081)
T KOG1538|consen 45 LLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL-------------------EGILKYSHNDAIQCMSF---- 101 (1081)
T ss_pred cccccccccceEEEEEEccCCceeccCCCceeEEEecccc-------------------cceeeeccCCeeeEeec----
Confidence 4568999999999999999999999999999999997642 34467789999999999
Q ss_pred CccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccc
Q 014125 132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEK 210 (430)
Q Consensus 132 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~ 210 (430)
+|-...|++++-.. .-+|......... .+. ...+.+++|..||++++.| .+|+|.+=+-... ..
T Consensus 102 ---NP~~h~LasCsLsd-FglWS~~qK~V~K-~ks------s~R~~~CsWtnDGqylalG~~nGTIsiRNk~gE--ek-- 166 (1081)
T KOG1538|consen 102 ---NPITHQLASCSLSD-FGLWSPEQKSVSK-HKS------SSRIICCSWTNDGQYLALGMFNGTISIRNKNGE--EK-- 166 (1081)
T ss_pred ---CchHHHhhhcchhh-ccccChhhhhHHh-hhh------heeEEEeeecCCCcEEEEeccCceEEeecCCCC--cc--
Confidence 55677888887654 7788876543322 121 1278899999999999977 8999988754321 11
Q ss_pred cccccCCCCCCCcceEEEEEcCCC----CceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecC
Q 014125 211 YSTLKGNKEGQAGIMSAIAFSPTH----TGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRK 286 (430)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~~~~~----~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 286 (430)
.......+...+|.+++|+|.. ...+++.....++.+|.+. |+.+..-+.......|+.+.++|.+++.|| .
T Consensus 167 --~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGG-s 242 (1081)
T KOG1538|consen 167 --VKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGG-S 242 (1081)
T ss_pred --eEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEcc-C
Confidence 1112224667899999999953 2367888888888888875 555544344445668999999999999999 8
Q ss_pred CCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEc
Q 014125 287 DPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDL 341 (430)
Q Consensus 287 d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 341 (430)
|+.+.+|.-..- .+.+.......|+.++..|++++++.|+.||+|-.|++
T Consensus 243 dk~L~~fTR~Gv-----rLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 243 DKQLSLFTRDGV-----RLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred CCceEEEeecCe-----EEeeccccceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence 999999965432 22233457789999999999999999999999999987
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-19 Score=149.27 Aligned_cols=278 Identities=14% Similarity=0.215 Sum_probs=187.0
Q ss_pred cceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccc
Q 014125 51 NQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH 130 (430)
Q Consensus 51 ~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 130 (430)
.....+..|...|+++.|+|+|..||+|+.+|.|.+|....-... ....+................|...|+.++|
T Consensus 56 ~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~-~~d~e~~~~ke~w~v~k~lr~h~~diydL~W--- 131 (434)
T KOG1009|consen 56 EYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIF-DADTEADLNKEKWVVKKVLRGHRDDIYDLAW--- 131 (434)
T ss_pred EEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCc-cccchhhhCccceEEEEEecccccchhhhhc---
Confidence 456689999999999999999999999999999999987642221 0001111111223344455668899999999
Q ss_pred cCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCCccc
Q 014125 131 MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFE 209 (430)
Q Consensus 131 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~~ 209 (430)
+|++..+++++.|..+++||+..|+....+..|.+ .+..++|.|-++++++ +.|...+.+.+........
T Consensus 132 ----s~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~-----yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~ 202 (434)
T KOG1009|consen 132 ----SPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEH-----YVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKR 202 (434)
T ss_pred ----cCCCceeeeeeccceEEEEEeccceeEeecccccc-----ccceeecchhhhhhhhhccCcccceeeeeeeeeeee
Confidence 77899999999999999999999999999888876 8889999999999983 5666666665543211100
Q ss_pred cc-cccc-C-------------CCCCCCcceEEEEEcCCCCceEEEecC----CC-----eEEEEEcCC-ceeeEEeecc
Q 014125 210 KY-STLK-G-------------NKEGQAGIMSAIAFSPTHTGMLAIGSY----SQ-----TSAIYREDN-MELLYVLHGQ 264 (430)
Q Consensus 210 ~~-~~~~-~-------------~~~~~~~~v~~~~~~~~~~~~l~~~~~----dg-----~v~~~d~~~-~~~~~~~~~~ 264 (430)
.. .... . ....-..-...++|+| ++.++++.+. ++ +.++|+-.. .++...+...
T Consensus 203 ~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTP-dG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~ 281 (434)
T KOG1009|consen 203 HGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTP-DGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSP 281 (434)
T ss_pred eeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCC-CCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCC
Confidence 00 0000 0 0001123356778899 5557766432 22 234454332 2344444444
Q ss_pred ccCeEEEEEccC-----------------CCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEE
Q 014125 265 EGGVTHVQFSRD-----------------GNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHL 327 (430)
Q Consensus 265 ~~~i~~~~~~~~-----------------~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 327 (430)
..+...+.|+|- .+.+++.. ..+.|++||.++........ .-|-..++.++|+++|.+|
T Consensus 282 ~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiA-t~~svyvydtq~~~P~~~v~---nihy~~iTDiaws~dg~~l 357 (434)
T KOG1009|consen 282 KKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIA-TKNSVYVYDTQTLEPLAVVD---NIHYSAITDIAWSDDGSVL 357 (434)
T ss_pred CcceEEEEeeeeEEEeccccccccccccccceEEEEe-ecceEEEeccccccceEEEe---eeeeeeecceeecCCCcEE
Confidence 455555665541 12344444 57899999998864443222 4678899999999999999
Q ss_pred EEEccCCcEEEEEcCCCCe
Q 014125 328 GTGGQDGLVHIYDLQTGKW 346 (430)
Q Consensus 328 ~~~~~dg~i~vwd~~~~~~ 346 (430)
+..+.||...+--++.+++
T Consensus 358 ~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 358 LVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred EEeccCCceEEEEEcchhc
Confidence 9999999988877776554
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.9e-21 Score=172.88 Aligned_cols=290 Identities=17% Similarity=0.211 Sum_probs=214.8
Q ss_pred eeeecceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeee
Q 014125 47 YHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFC 126 (430)
Q Consensus 47 ~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 126 (430)
.+..+.++.+.||...|+|+.|...|.++++|+.|..++||.+++..+.....+ |.+.|+.++
T Consensus 177 vqkmk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rG-----------------hs~ditdla 239 (1113)
T KOG0644|consen 177 VQKMKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRG-----------------HSGDITDLA 239 (1113)
T ss_pred HHHHHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCC-----------------Cccccchhc
Confidence 344456678899999999999999999999999999999999988766555444 447888888
Q ss_pred eccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCC
Q 014125 127 WFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGR 206 (430)
Q Consensus 127 ~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~ 206 (430)
. +.+...+++++.|..|++|.+.++.++..+.+|.+ .|++++|+|-. .++.||++++||.+-...
T Consensus 240 v-------s~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtg-----avtaiafsP~~---sss~dgt~~~wd~r~~~~ 304 (1113)
T KOG0644|consen 240 V-------SSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTG-----AVTAIAFSPRA---SSSDDGTCRIWDARLEPR 304 (1113)
T ss_pred c-------chhhhhhhhcccCceEEEEecCCCchHHHHhcccc-----ceeeeccCccc---cCCCCCceEecccccccc
Confidence 7 55677899999999999999999999999988876 99999999976 566899999999872111
Q ss_pred cccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecC
Q 014125 207 DFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRK 286 (430)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 286 (430)
. .............+.++.|.. ....+++|+.|+.-..|.+... ..+...+.-+.++.+-..+......
T Consensus 305 ~----y~prp~~~~~~~~~~s~~~~~-~~~~f~Tgs~d~ea~n~e~~~l------~~~~~~lif~t~ssd~~~~~~~ar~ 373 (1113)
T KOG0644|consen 305 I----YVPRPLKFTEKDLVDSILFEN-NGDRFLTGSRDGEARNHEFEQL------AWRSNLLIFVTRSSDLSSIVVTARN 373 (1113)
T ss_pred c----cCCCCCCcccccceeeeeccc-cccccccccCCcccccchhhHh------hhhccceEEEeccccccccceeeee
Confidence 0 011111111224456666665 5667899999998887765421 1222223333333333333333337
Q ss_pred CCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCC-CEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCC
Q 014125 287 DPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSG-RHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPF 365 (430)
Q Consensus 287 d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 365 (430)
+..+.+|++.++... ....+|...+..+.++|-. +...+++.||...|||+-.|.+++.+....+.+..-+|+++
T Consensus 374 ~~~~~vwnl~~g~l~----H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqd 449 (1113)
T KOG0644|consen 374 DHRLCVWNLYTGQLL----HNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQD 449 (1113)
T ss_pred eeEeeeeecccchhh----hhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCC
Confidence 889999999887432 2236788899999999965 45668999999999999999887766544567788899999
Q ss_pred CcEEEEeeCCceeeecCC
Q 014125 366 LPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 366 ~~~l~s~~~d~~~~vw~~ 383 (430)
|..++.....|.+.|...
T Consensus 450 gts~~lsd~hgql~i~g~ 467 (1113)
T KOG0644|consen 450 GTSIALSDDHGQLYILGT 467 (1113)
T ss_pred CceEecCCCCCceEEecc
Confidence 999999988888888743
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.8e-19 Score=135.35 Aligned_cols=231 Identities=11% Similarity=0.089 Sum_probs=158.4
Q ss_pred CCCCceEEEEeCCCcEEEEeccCC----------ceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCC
Q 014125 135 DPTSCVFASTTRDHPIHLWDATTG----------LLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRP 204 (430)
Q Consensus 135 ~~~~~~l~~~~~dg~i~vwd~~~~----------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~ 204 (430)
+|.+++|++|..+|+|.+..+.+- ..+...+. |..+++.++|+ ..+|+++.||.|+-|..+..
T Consensus 19 sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqa-----hdgpiy~~~f~--d~~Lls~gdG~V~gw~W~E~ 91 (325)
T KOG0649|consen 19 SPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQA-----HDGPIYYLAFH--DDFLLSGGDGLVYGWEWNEE 91 (325)
T ss_pred CCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccc-----cCCCeeeeeee--hhheeeccCceEEEeeehhh
Confidence 778999999999999999987542 12222333 34499999997 45777777899999988754
Q ss_pred CCcccccc--cccCCC---CCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCE
Q 014125 205 GRDFEKYS--TLKGNK---EGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNY 279 (430)
Q Consensus 205 ~~~~~~~~--~~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 279 (430)
.+...... ..+... ...--.|++|...| ..+-++.++.|+.++-||+++|+..+.+++|...|.++.--.....
T Consensus 92 ~es~~~K~lwe~~~P~~~~~~evPeINam~ldP-~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~q 170 (325)
T KOG0649|consen 92 EESLATKRLWEVKIPMQVDAVEVPEINAMWLDP-SENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQ 170 (325)
T ss_pred hhhccchhhhhhcCccccCcccCCccceeEecc-CCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcc
Confidence 33111110 011000 11123588999999 4445555568999999999999999999999999999998555567
Q ss_pred EEEEecCCCeEEEEeCCCCceEEEEeecc------cC-CccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccccc
Q 014125 280 LYTGGRKDPYILCWDLRKAVQVVYKLYRS------SE-HTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQA 352 (430)
Q Consensus 280 l~~~~~~d~~i~i~d~~~~~~~~~~~~~~------~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 352 (430)
+++|+ .||++|+||.++.+.... +... .. ....|-+++. +..+|++|+. ..+.+|.+++.++...+.
T Consensus 171 ilsG~-EDGtvRvWd~kt~k~v~~-ie~yk~~~~lRp~~g~wigala~--~edWlvCGgG-p~lslwhLrsse~t~vfp- 244 (325)
T KOG0649|consen 171 ILSGA-EDGTVRVWDTKTQKHVSM-IEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGG-PKLSLWHLRSSESTCVFP- 244 (325)
T ss_pred eeecC-CCccEEEEeccccceeEE-eccccChhhcCcccCceeEEEec--cCceEEecCC-CceeEEeccCCCceEEEe-
Confidence 89999 999999999999865432 1110 11 1234555554 4568888765 469999999998887776
Q ss_pred ccCCeeEEEEcCCCcEEEEeeCCceeeec
Q 014125 353 AADTVNGFSFHPFLPMAASSSGHRRFPVD 381 (430)
Q Consensus 353 ~~~~v~~~~~~~~~~~l~s~~~d~~~~vw 381 (430)
-..+|..+.|.. ..+++++..+.+.-|
T Consensus 245 ipa~v~~v~F~~--d~vl~~G~g~~v~~~ 271 (325)
T KOG0649|consen 245 IPARVHLVDFVD--DCVLIGGEGNHVQSY 271 (325)
T ss_pred cccceeEeeeec--ceEEEeccccceeee
Confidence 345677777753 345555544444444
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.5e-19 Score=140.74 Aligned_cols=286 Identities=17% Similarity=0.242 Sum_probs=198.3
Q ss_pred ceeEEEECc--C-CceEEEecC----CCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCcc
Q 014125 62 FLKGIKWSP--D-GSSFLTSSE----DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS 134 (430)
Q Consensus 62 ~v~~~~~sp--~-~~~l~s~~~----dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 134 (430)
.+.++.||. + +.+||.|+. ...|.|-.+.... ........+.|.-+++.+.|.|.....
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s--------------~e~~~~a~fd~~YP~tK~~wiPd~~g~ 111 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDS--------------GELVEDANFDHPYPVTKLMWIPDSKGV 111 (364)
T ss_pred ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCC--------------CceeccCCCCCCCCccceEecCCcccc
Confidence 477888883 3 447888875 3566666554221 111122225677799999998865443
Q ss_pred CCCCceEEEEeCCCcEEEEeccCC--ce--eeeeecccccccccceEEEEECCCCcEEE--EEcCCeEEEEEcCCCCCcc
Q 014125 135 DPTSCVFASTTRDHPIHLWDATTG--LL--RCTYRAYDAVDEITAAFSVAFNPTGTKIF--AGYNKSVRVFDVHRPGRDF 208 (430)
Q Consensus 135 ~~~~~~l~~~~~dg~i~vwd~~~~--~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~~~d~~i~v~d~~~~~~~~ 208 (430)
.| .+||+++ ..+++|.+... +. ...+..........+++++.|+.-...++ ++-|-+..|||++.+..
T Consensus 112 ~p--dlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~-- 185 (364)
T KOG0290|consen 112 YP--DLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVS-- 185 (364)
T ss_pred Cc--chhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccc--
Confidence 44 3565543 45999998742 21 22233333334556899999988665544 44899999999987511
Q ss_pred cccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEe---eccccCeEEEEEccCC-CEEEEEe
Q 014125 209 EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVL---HGQEGGVTHVQFSRDG-NYLYTGG 284 (430)
Q Consensus 209 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~---~~~~~~i~~~~~~~~~-~~l~~~~ 284 (430)
...+..+-.|...|..++|...+..+||+.+.||.|++||++..+....+ .....+...++|++.. +++++-.
T Consensus 186 ---~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~ 262 (364)
T KOG0290|consen 186 ---GTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFA 262 (364)
T ss_pred ---cceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhh
Confidence 12333346788899999999978889999999999999999976543332 2224578899998754 5677766
Q ss_pred cCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCC-CEEEEEccCCcEEEEEcCCCC------eecccccccCCe
Q 014125 285 RKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSG-RHLGTGGQDGLVHIYDLQTGK------WISGFQAAADTV 357 (430)
Q Consensus 285 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~------~~~~~~~~~~~v 357 (430)
.....|.+.|+|.+..++..+ ..|...|+.++|.|.. ..|++++.|..+.+||+...- ++..+. -.+.|
T Consensus 263 ~dS~~V~iLDiR~P~tpva~L---~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EV 338 (364)
T KOG0290|consen 263 MDSNKVVILDIRVPCTPVARL---RNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEV 338 (364)
T ss_pred cCCceEEEEEecCCCcceehh---hcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-cccee
Confidence 455789999999887665554 7899999999999964 689999999999999997531 222333 45689
Q ss_pred eEEEEcCCC-cEEEEeeC
Q 014125 358 NGFSFHPFL-PMAASSSG 374 (430)
Q Consensus 358 ~~~~~~~~~-~~l~s~~~ 374 (430)
+.+.|++.. ..++.+..
T Consensus 339 Nqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 339 NQIQWSSSQPDWIAICFG 356 (364)
T ss_pred eeeeecccCCCEEEEEec
Confidence 999999754 46666653
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-19 Score=148.47 Aligned_cols=181 Identities=17% Similarity=0.215 Sum_probs=152.5
Q ss_pred CCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCc-------eeeEEeeccccCeEEEEEccCCC-EEEEEecCCCe
Q 014125 218 KEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-------ELLYVLHGQEGGVTHVQFSRDGN-YLYTGGRKDPY 289 (430)
Q Consensus 218 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~-------~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~d~~ 289 (430)
..+|.++|..++|+|.+.+.+|+|++|.+|.||.+..+ +++..+.+|...|--++|+|... .|++++ .|.+
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag-~Dn~ 155 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAG-SDNT 155 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhcc-CCce
Confidence 47899999999999999999999999999999998754 45778889999999999999754 566666 8999
Q ss_pred EEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccC-CeeEEEEcCCCcE
Q 014125 290 ILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAAD-TVNGFSFHPFLPM 368 (430)
Q Consensus 290 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~ 368 (430)
|.+|++.++...+. + .|...|+++.|+.+|.+|++.+.|..|+|||.++++.+..-.+|.+ .-..+.|-.+|.+
T Consensus 156 v~iWnv~tgeali~-l----~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i 230 (472)
T KOG0303|consen 156 VSIWNVGTGEALIT-L----DHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKI 230 (472)
T ss_pred EEEEeccCCceeee-c----CCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCce
Confidence 99999999865543 2 3999999999999999999999999999999999999998888887 3566778888885
Q ss_pred EEEee---CCceeeecCCCc----------------------------cccccCCCcEEEEeecccc
Q 014125 369 AASSS---GHRRFPVDDFED----------------------------LHLSGDENCVSVWSFLYAS 404 (430)
Q Consensus 369 l~s~~---~d~~~~vw~~~~----------------------------l~~~~~d~~i~~w~~~~~~ 404 (430)
+.||- ++..+.+||.+. .+++-.|+.||-+.+..+.
T Consensus 231 ~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 231 FTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred eeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 55553 367889996543 3455679999999998665
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=6e-19 Score=150.82 Aligned_cols=271 Identities=13% Similarity=0.190 Sum_probs=186.7
Q ss_pred cCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCC
Q 014125 58 IPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT 137 (430)
Q Consensus 58 ~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 137 (430)
.|...|.|+.|+.....+.+++.+..+.-|++..... .....+. ...+. .+.-.|....-...
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~-~~~~~p~------df~pt----------~~h~~~rs~~~g~~ 74 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSV-EVAKLPD------DFVPT----------DMHLGGRSSGGGKG 74 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhh-hhhhCCc------ccCCc----------cccccccccCCCCC
Confidence 4566678999998776666666554444455543221 1111100 00000 00000100000223
Q ss_pred CceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCcccccccccC
Q 014125 138 SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKG 216 (430)
Q Consensus 138 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~ 216 (430)
...|+.++.||.+.+.+- .++.......|.. .+.+-.|+|+|.-|+ +|.||.|++|.-.. .++.
T Consensus 75 ~d~~~i~s~DGkf~il~k-~~rVE~sv~AH~~-----A~~~gRW~~dGtgLlt~GEDG~iKiWSrsG---------MLRS 139 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNK-SARVERSISAHAA-----AISSGRWSPDGAGLLTAGEDGVIKIWSRSG---------MLRS 139 (737)
T ss_pred cceEEEEcCCceEEEecc-cchhhhhhhhhhh-----hhhhcccCCCCceeeeecCCceEEEEeccc---------hHHH
Confidence 457899999999998874 4555556666655 888999999998887 67999999998542 1222
Q ss_pred CCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCC
Q 014125 217 NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR 296 (430)
Q Consensus 217 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~ 296 (430)
.......+|.|++|.|+..+.+.+.+ +.+.+=.+.....+-..++|.+-|.++.|++....++++| .|-..++||..
T Consensus 140 tl~Q~~~~v~c~~W~p~S~~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgG-ED~kfKvWD~~ 216 (737)
T KOG1524|consen 140 TVVQNEESIRCARWAPNSNSIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGG-EDFRFKIWDAQ 216 (737)
T ss_pred HHhhcCceeEEEEECCCCCceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecC-CceeEEeeccc
Confidence 22334567999999998777777665 5566666666666778889999999999999999999999 99999999986
Q ss_pred CCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCc
Q 014125 297 KAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHR 376 (430)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~ 376 (430)
.. .++....|..+|++++|.|+ ..++.++.+ ++++= +...+.|..++|++||..++.|+..|
T Consensus 217 G~-----~Lf~S~~~ey~ITSva~npd-~~~~v~S~n-t~R~~-----------~p~~GSifnlsWS~DGTQ~a~gt~~G 278 (737)
T KOG1524|consen 217 GA-----NLFTSAAEEYAITSVAFNPE-KDYLLWSYN-TARFS-----------SPRVGSIFNLSWSADGTQATCGTSTG 278 (737)
T ss_pred Cc-----ccccCChhccceeeeeeccc-cceeeeeee-eeeec-----------CCCccceEEEEEcCCCceeeccccCc
Confidence 54 34555789999999999999 556666543 44411 12346799999999999999999999
Q ss_pred eeeec
Q 014125 377 RFPVD 381 (430)
Q Consensus 377 ~~~vw 381 (430)
.+.+-
T Consensus 279 ~v~~A 283 (737)
T KOG1524|consen 279 QLIVA 283 (737)
T ss_pred eEEEe
Confidence 87764
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.8e-18 Score=130.60 Aligned_cols=281 Identities=12% Similarity=0.177 Sum_probs=189.6
Q ss_pred ceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCccc-ceeeecCCCeeeeeeeccccCccCCCCce
Q 014125 62 FLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYE-ASLVVTEGESVYDFCWFPHMSASDPTSCV 140 (430)
Q Consensus 62 ~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (430)
.|.+-+++|.+++|+.|..+|.|-+..+.+...-.. ..+... ...+..|.++++.++|. ..+
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa--------~~~gk~~iv~eqahdgpiy~~~f~---------d~~ 74 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSA--------EPPGKLKIVPEQAHDGPIYYLAFH---------DDF 74 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhcccc--------CCCCCcceeeccccCCCeeeeeee---------hhh
Confidence 366778999999999999999999999875321111 111111 12236788999999993 335
Q ss_pred EEEEeCCCcEEEEeccCCce------eeeeec--ccccccccceEEEEECCCCcEE-EEEcCCeEEEEEcCCCCCccccc
Q 014125 141 FASTTRDHPIHLWDATTGLL------RCTYRA--YDAVDEITAAFSVAFNPTGTKI-FAGYNKSVRVFDVHRPGRDFEKY 211 (430)
Q Consensus 141 l~~~~~dg~i~vwd~~~~~~------~~~~~~--~~~~~~~~~v~~~~~~~~~~~l-~~~~d~~i~v~d~~~~~~~~~~~ 211 (430)
|++|+ ||.|+=|....... ....+. +........|+++-..|...-+ .++.|+.++-||+++
T Consensus 75 Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~-------- 145 (325)
T KOG0649|consen 75 LLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLED-------- 145 (325)
T ss_pred eeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecC--------
Confidence 66665 59999998754321 111111 1212334578899999876544 488999999999988
Q ss_pred ccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccc----------cCeEEEEEccCCCEEE
Q 014125 212 STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE----------GGVTHVQFSRDGNYLY 281 (430)
Q Consensus 212 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~----------~~i~~~~~~~~~~~l~ 281 (430)
..+...+.+|+..+.++.-.. ....+++|++||++++||.++++.+..+.... ..|.+++. +..+|+
T Consensus 146 G~i~r~~rGHtDYvH~vv~R~-~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlv 222 (325)
T KOG0649|consen 146 GRIQREYRGHTDYVHSVVGRN-ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLV 222 (325)
T ss_pred CEEEEEEcCCcceeeeeeecc-cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEE
Confidence 356666789999999999855 45589999999999999999999887765321 23555655 556787
Q ss_pred EEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEE
Q 014125 282 TGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFS 361 (430)
Q Consensus 282 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~ 361 (430)
+|+ ...+.+|.++........ .-...+..+.|.. ..++++++.+.|.-|.+. |.+-...+..........
T Consensus 223 CGg--Gp~lslwhLrsse~t~vf-----pipa~v~~v~F~~--d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s 292 (325)
T KOG0649|consen 223 CGG--GPKLSLWHLRSSESTCVF-----PIPARVHLVDFVD--DCVLIGGEGNHVQSYTLN-GVLQANIPVESTACYSAS 292 (325)
T ss_pred ecC--CCceeEEeccCCCceEEE-----ecccceeEeeeec--ceEEEeccccceeeeeec-cEEEEeccCCccceeeec
Confidence 775 788999999987554322 2344566677764 478888888889999876 444444444444556666
Q ss_pred EcCC-CcEEEEeeCCceeeec
Q 014125 362 FHPF-LPMAASSSGHRRFPVD 381 (430)
Q Consensus 362 ~~~~-~~~l~s~~~d~~~~vw 381 (430)
|+.. -++|-.++...++.|.
T Consensus 293 ~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 293 WQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred ccCCceEEEEecccceeeeee
Confidence 6533 2344445555555544
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.5e-19 Score=155.41 Aligned_cols=268 Identities=16% Similarity=0.213 Sum_probs=188.2
Q ss_pred eecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCc
Q 014125 54 RTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (430)
Q Consensus 54 ~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (430)
.++..|.+.|+.++|.|....|++|+.||++.+|++...... ..........+..|.++|.|++.
T Consensus 288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s---------~~~~~epi~tfraH~gPVl~v~v------ 352 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKS---------AEKDVEPILTFRAHEGPVLCVVV------ 352 (577)
T ss_pred eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCc---------cccceeeeEEEecccCceEEEEe------
Confidence 378899999999999999999999999999999999431110 01112233456678899999999
Q ss_pred cCCCCceEEEEeCCCcEEEEeccCCc----------eeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcC
Q 014125 134 SDPTSCVFASTTRDHPIHLWDATTGL----------LRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVH 202 (430)
Q Consensus 134 ~~~~~~~l~~~~~dg~i~vwd~~~~~----------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~ 202 (430)
.+++..+++|+-||+|+.|++.... ....+. +|...++.+++++....|+ ++.||+++.|+..
T Consensus 353 -~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~-----Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~ 426 (577)
T KOG0642|consen 353 -PSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLL-----GHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPT 426 (577)
T ss_pred -cCCceEEEeeccCceeeeeccCCCCCcccccCcchhcccee-----ccccceeeeeecccccceeeecCCceEEeeccC
Confidence 6789999999999999999765321 112233 3445899999999888777 6699999999986
Q ss_pred CCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeec-------cccCeEEEEEcc
Q 014125 203 RPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG-------QEGGVTHVQFSR 275 (430)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~-------~~~~i~~~~~~~ 275 (430)
.... ..+.. ....+...++.+-.......++...-+.-.++++.....+..+.. ....+..+.++|
T Consensus 427 ~~~~--~~f~~-----~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~ 499 (577)
T KOG0642|consen 427 EESP--CTFGE-----PKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHP 499 (577)
T ss_pred CcCc--cccCC-----ccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecC
Confidence 5332 11111 112233455555432222333333333333344444433333321 113477888999
Q ss_pred CCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccccccc
Q 014125 276 DGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAA 354 (430)
Q Consensus 276 ~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 354 (430)
.+...+++. .|+.|+++|..++... .....|...++++++.|+|.+|++++.|+++++|.+....++.....|.
T Consensus 500 ~~~~~~~~h-ed~~Ir~~dn~~~~~l----~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 500 TADITFTAH-EDRSIRFFDNKTGKIL----HSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHR 573 (577)
T ss_pred CCCeeEecc-cCCceecccccccccc----hheeeccceecceeecCCCceEEeecCCceeehhhccchheeecccccc
Confidence 999999999 9999999999887533 3335788899999999999999999999999999998777766665553
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.9e-17 Score=144.03 Aligned_cols=253 Identities=13% Similarity=0.174 Sum_probs=157.0
Q ss_pred CceeEEEECcCCceEEEec-CCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCc
Q 014125 61 NFLKGIKWSPDGSSFLTSS-EDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC 139 (430)
Q Consensus 61 ~~v~~~~~sp~~~~l~s~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (430)
+....++++|++++|++++ .++.|.+|++......... ...........+++ +|+++
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~---------------~~~~~~~~p~~i~~-------~~~g~ 92 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFA---------------AESPLPGSPTHIST-------DHQGR 92 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEe---------------eeecCCCCceEEEE-------CCCCC
Confidence 4577899999999887664 4788999998632110000 00111123345556 78899
Q ss_pred eEEEEeC-CCcEEEEeccCC-ceeeeeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCCccccccccc
Q 014125 140 VFASTTR-DHPIHLWDATTG-LLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYSTLK 215 (430)
Q Consensus 140 ~l~~~~~-dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~~~~~~~~ 215 (430)
.|++++. ++.|.+|++.+. .......... ....+.+++++|++++++ +. .++.|.+||+...+..........
T Consensus 93 ~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~---~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~ 169 (330)
T PRK11028 93 FLFSASYNANCVSVSPLDKDGIPVAPIQIIE---GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEV 169 (330)
T ss_pred EEEEEEcCCCeEEEEEECCCCCCCCceeecc---CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCce
Confidence 8888764 789999999643 2211111111 111456788999999887 44 679999999976322110000000
Q ss_pred CCCCCCCcceEEEEEcCCCCceEEEec-CCCeEEEEEcCC--c--eeeEEeecc------ccCeEEEEEccCCCEEEEEe
Q 014125 216 GNKEGQAGIMSAIAFSPTHTGMLAIGS-YSQTSAIYREDN--M--ELLYVLHGQ------EGGVTHVQFSRDGNYLYTGG 284 (430)
Q Consensus 216 ~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~v~~~d~~~--~--~~~~~~~~~------~~~i~~~~~~~~~~~l~~~~ 284 (430)
. .........+.|+|++. +++++. .+++|.+|++.. + +.+..+..+ ......+.++|++++++++.
T Consensus 170 -~-~~~g~~p~~~~~~pdg~-~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~ 246 (330)
T PRK11028 170 -T-TVEGAGPRHMVFHPNQQ-YAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACD 246 (330)
T ss_pred -e-cCCCCCCceEEECCCCC-EEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEec
Confidence 0 01123367899999544 555554 499999999973 2 223333221 11234688999999999987
Q ss_pred cCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEcc-CCcEEEEEcC
Q 014125 285 RKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQ-DGLVHIYDLQ 342 (430)
Q Consensus 285 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~ 342 (430)
..++.|.+|++............... ......+.++|+|++|+++.. ++.|.+|+++
T Consensus 247 ~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 247 RTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 56899999999654322212111111 134457899999999998775 8899999875
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.2e-17 Score=154.32 Aligned_cols=272 Identities=14% Similarity=0.158 Sum_probs=175.4
Q ss_pred eeeecceeecccCCCceeEEEECcC-CceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeec-CCCeeee
Q 014125 47 YHFYNQFRTSSIPNNFLKGIKWSPD-GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVT-EGESVYD 124 (430)
Q Consensus 47 ~~~~~~~~~~~~h~~~v~~~~~sp~-~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~ 124 (430)
......+..+..|+..|..++.+++ +.+++|||.||+|++|+...-.-. ........... .+..+.+
T Consensus 1035 ~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~-----------~~s~rS~ltys~~~sr~~~ 1103 (1431)
T KOG1240|consen 1035 NPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGE-----------GGSARSELTYSPEGSRVEK 1103 (1431)
T ss_pred CccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcC-----------cceeeeeEEEeccCCceEE
Confidence 3434556678899999999998875 599999999999999998743211 00111112222 5667777
Q ss_pred eeeccccCccCCCCceEEEEeCCCcEEEEeccCC--ceeeeee-cccccccccceEEE-EECCC-Cc-EEE-EEcCCeEE
Q 014125 125 FCWFPHMSASDPTSCVFASTTRDHPIHLWDATTG--LLRCTYR-AYDAVDEITAAFSV-AFNPT-GT-KIF-AGYNKSVR 197 (430)
Q Consensus 125 ~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~-~~~~~~~~~~v~~~-~~~~~-~~-~l~-~~~d~~i~ 197 (430)
+... +.+..+|.++.||.|++.++... ....... ........+.+.++ +|... +. .++ +...+.|.
T Consensus 1104 vt~~-------~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv 1176 (1431)
T KOG1240|consen 1104 VTMC-------GNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIV 1176 (1431)
T ss_pred EEec-------cCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceE
Confidence 7774 36889999999999999998762 1111111 11111111233333 33322 22 344 55788999
Q ss_pred EEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEee-ccccCeEEEEEccC
Q 014125 198 VFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH-GQEGGVTHVQFSRD 276 (430)
Q Consensus 198 v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~-~~~~~i~~~~~~~~ 276 (430)
.||++.....+. .......+.|++++.+| ..+++++|+..|.+.+||++-+.++.... ++..+|+.+..+|-
T Consensus 1177 ~~D~r~~~~~w~------lk~~~~hG~vTSi~idp-~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~ 1249 (1431)
T KOG1240|consen 1177 SWDTRMRHDAWR------LKNQLRHGLVTSIVIDP-WCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPT 1249 (1431)
T ss_pred EecchhhhhHHh------hhcCccccceeEEEecC-CceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeecc
Confidence 999986432221 11233457799999999 77799999999999999999887776654 33467888877764
Q ss_pred C---CEEEEEec-CCCeEEEEeCCCCceEEEEeec-c----------c----CCccceEEEEEcCCCCEEEEEccCCcEE
Q 014125 277 G---NYLYTGGR-KDPYILCWDLRKAVQVVYKLYR-S----------S----EHTNQRILFDIEPSGRHLGTGGQDGLVH 337 (430)
Q Consensus 277 ~---~~l~~~~~-~d~~i~i~d~~~~~~~~~~~~~-~----------~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 337 (430)
. ...++++. ..+.|.+|++.++......... . . .+.-....+.+...+..+.+|+.|..|+
T Consensus 1250 ~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR 1329 (1431)
T KOG1240|consen 1250 YPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIR 1329 (1431)
T ss_pred CCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCcccee
Confidence 3 46666664 5788999999987443222111 0 0 1111222333444457899999999999
Q ss_pred EEEcCC
Q 014125 338 IYDLQT 343 (430)
Q Consensus 338 vwd~~~ 343 (430)
.||...
T Consensus 1330 ~wD~~~ 1335 (1431)
T KOG1240|consen 1330 KWDPTR 1335 (1431)
T ss_pred eccCCC
Confidence 999864
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-16 Score=146.64 Aligned_cols=291 Identities=27% Similarity=0.453 Sum_probs=213.4
Q ss_pred cceeecccCCCceeEEEECcCCceEEEecC-CCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecc
Q 014125 51 NQFRTSSIPNNFLKGIKWSPDGSSFLTSSE-DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFP 129 (430)
Q Consensus 51 ~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 129 (430)
.....+.+|...|.+++|+|+++++++++. |+.+++|++...... .....|...|.+++|
T Consensus 146 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~v~~~~~-- 206 (466)
T COG2319 146 KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPL-----------------STLAGHTDPVSSLAF-- 206 (466)
T ss_pred eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceE-----------------EeeccCCCceEEEEE--
Confidence 445678899999999999999999999886 999999999863221 122226689999999
Q ss_pred ccCccCCCCc-eEEEEeCCCcEEEEeccCCceee-eeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCC
Q 014125 130 HMSASDPTSC-VFASTTRDHPIHLWDATTGLLRC-TYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGR 206 (430)
Q Consensus 130 ~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~ 206 (430)
+|++. .+++++.|+.|++||...+.... .+..+.. .. ...|+|++.+++ ++.++.+++|++.....
T Consensus 207 -----~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 275 (466)
T COG2319 207 -----SPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSD-----SV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS 275 (466)
T ss_pred -----cCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCc-----ce-eEeECCCCCEEEEecCCCcEEEeeecCCCc
Confidence 45666 55556999999999988777666 4554443 32 228999997777 55999999999986543
Q ss_pred cccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEee--ccccCeEEEEEccCCCEEEEEe
Q 014125 207 DFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH--GQEGGVTHVQFSRDGNYLYTGG 284 (430)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~ 284 (430)
.. ... ..|...+.++.|+| ....+++++.|+.+.+|+..+........ .|...+..+.|.+++..++.++
T Consensus 276 ~~---~~~----~~~~~~v~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (466)
T COG2319 276 LL---RTL----SGHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGG 347 (466)
T ss_pred EE---EEE----ecCCccEEEEEECC-CCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEee
Confidence 11 111 45678899999999 55566668888899999998877666555 7777899999943335666663
Q ss_pred cCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEE-EccCCcEEEEEcCCCCeecccccccCCeeEEEEc
Q 014125 285 RKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGT-GGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFH 363 (430)
Q Consensus 285 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~ 363 (430)
..|+.+.+|++.... ..... .....+..+.+.+ ...+.. +..++.+.+|+............+...+....+.
T Consensus 348 ~~d~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (466)
T COG2319 348 SDDGTIRLWDLRTGK-PLKTL----EGHSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFS 421 (466)
T ss_pred cCCCcEEeeecCCCc-eeEEe----cCCceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEEC
Confidence 378999999998875 22111 1112278888888 544444 6889999999999888777666544788999999
Q ss_pred CCCcEEEEeeCCceeeecCCCc
Q 014125 364 PFLPMAASSSGHRRFPVDDFED 385 (430)
Q Consensus 364 ~~~~~l~s~~~d~~~~vw~~~~ 385 (430)
+++..+++++.++.+.+|+...
T Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 422 PDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred CCCcEEEEecCCCcEEEEeccC
Confidence 9999999987766666665544
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.6e-16 Score=128.86 Aligned_cols=239 Identities=17% Similarity=0.251 Sum_probs=170.7
Q ss_pred CceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCce
Q 014125 61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV 140 (430)
Q Consensus 61 ~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (430)
..+..+.|+.|...|..|+.|| .++|+.+..... ......+..|--+-|+ ..+
T Consensus 6 ~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~-----------------~~~~~~~~~IvEmLFS---------SSL 58 (391)
T KOG2110|consen 6 PTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKC-----------------FSKDTEGVSIVEMLFS---------SSL 58 (391)
T ss_pred cceeeeeeccceeEEEccCCCc-eeEEecCchHHh-----------------hcccCCCeEEEEeecc---------cce
Confidence 4567778999999999999998 478877643210 0111122345555552 335
Q ss_pred EEEEeCC--CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccCCC
Q 014125 141 FASTTRD--HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNK 218 (430)
Q Consensus 141 l~~~~~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~ 218 (430)
+|..+.+ +.+++++...+..++.+.... +|.++.++. +.|++.-...|+|||++... ...++.. .
T Consensus 59 vaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt------~IL~VrmNr--~RLvV~Lee~IyIydI~~Mk----lLhTI~t-~ 125 (391)
T KOG2110|consen 59 VAIVSIKQPRKLKVVHFKKKTTICEIFFPT------SILAVRMNR--KRLVVCLEESIYIYDIKDMK----LLHTIET-T 125 (391)
T ss_pred eEEEecCCCceEEEEEcccCceEEEEecCC------ceEEEEEcc--ceEEEEEcccEEEEecccce----eehhhhc-c
Confidence 5555544 359999999988888877665 888999864 45666655569999998631 1122211 1
Q ss_pred CCCCcceEEEEEcCCCCceEEE--ecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCC-eEEEEeC
Q 014125 219 EGQAGIMSAIAFSPTHTGMLAI--GSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDP-YILCWDL 295 (430)
Q Consensus 219 ~~~~~~v~~~~~~~~~~~~l~~--~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~-~i~i~d~ 295 (430)
..+...+.++.+++ .+.+++. ....|.|.+||..+-+++..+..|.+++.+++|+++|.+||+++ ..| .||+|.+
T Consensus 126 ~~n~~gl~AlS~n~-~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATAS-eKGTVIRVf~v 203 (391)
T KOG2110|consen 126 PPNPKGLCALSPNN-ANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATAS-EKGTVIRVFSV 203 (391)
T ss_pred CCCccceEeeccCC-CCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEec-cCceEEEEEEc
Confidence 23344466666665 3445554 23468999999999999999999999999999999999999999 565 5799999
Q ss_pred CCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCC
Q 014125 296 RKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQT 343 (430)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 343 (430)
.++... +.+.+ ......|.+++|+|++.+|++.+..++|+||.+..
T Consensus 204 ~~G~kl-~eFRR-G~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 204 PEGQKL-YEFRR-GTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred CCccEe-eeeeC-CceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 888544 34333 33467789999999999999999999999999874
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.7e-18 Score=155.98 Aligned_cols=236 Identities=17% Similarity=0.243 Sum_probs=159.1
Q ss_pred CCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCC---CcEEEEeccC
Q 014125 81 DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRD---HPIHLWDATT 157 (430)
Q Consensus 81 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~vwd~~~ 157 (430)
+..|.+||.+... ......+...+...+| +|+|+.|+..+.+ ..|++||+.+
T Consensus 183 ~~~i~i~d~dg~~------------------~~~lt~~~~~v~~p~w-------SPDG~~la~~s~~~~~~~i~i~dl~t 237 (429)
T PRK01742 183 PYEVRVADYDGFN------------------QFIVNRSSQPLMSPAW-------SPDGSKLAYVSFENKKSQLVVHDLRS 237 (429)
T ss_pred eEEEEEECCCCCC------------------ceEeccCCCccccceE-------cCCCCEEEEEEecCCCcEEEEEeCCC
Confidence 4689999886432 1122344567888999 7899999887654 3699999988
Q ss_pred CceeeeeecccccccccceEEEEECCCCcEEEE-E-cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCC
Q 014125 158 GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-G-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHT 235 (430)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 235 (430)
++....... .. ....++|+|||+.|+. + .+|.+.||.++....... . ...+...+....|+|++.
T Consensus 238 g~~~~l~~~-~g-----~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~---~----lt~~~~~~~~~~wSpDG~ 304 (429)
T PRK01742 238 GARKVVASF-RG-----HNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPS---Q----LTSGAGNNTEPSWSPDGQ 304 (429)
T ss_pred CceEEEecC-CC-----ccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeE---e----eccCCCCcCCEEECCCCC
Confidence 764332211 11 2336899999998884 3 577766664432221111 1 123445578899999666
Q ss_pred ceEEEecCCCeEEEEEcCCc-eeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccc
Q 014125 236 GMLAIGSYSQTSAIYREDNM-ELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQ 314 (430)
Q Consensus 236 ~~l~~~~~dg~v~~~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 314 (430)
.+++++..++...+|+++.. .....+ .+.. ....|+|+|++|+..+ .++ +.+||+.++.... +.. .. .
T Consensus 305 ~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~-~~~-i~~~Dl~~g~~~~--lt~--~~--~ 373 (429)
T PRK01742 305 SILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMIN-GDN-VVKQDLTSGSTEV--LSS--TF--L 373 (429)
T ss_pred EEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEc-CCC-EEEEECCCCCeEE--ecC--CC--C
Confidence 56666667888888876532 222223 3333 4678999999999887 554 5669998775332 111 11 2
Q ss_pred eEEEEEcCCCCEEEEEccCCcEEEEEcC--CCCeecccccccCCeeEEEEcCC
Q 014125 315 RILFDIEPSGRHLGTGGQDGLVHIYDLQ--TGKWISGFQAAADTVNGFSFHPF 365 (430)
Q Consensus 315 v~~~~~~~~~~~l~~~~~dg~i~vwd~~--~~~~~~~~~~~~~~v~~~~~~~~ 365 (430)
...+.|+|+|++|+.++.++.+.+|.+. +++.+..+..|.+.+...+|+|-
T Consensus 374 ~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 374 DESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 2457899999999999999988888763 58888888888888999999985
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.1e-18 Score=147.55 Aligned_cols=241 Identities=15% Similarity=0.215 Sum_probs=161.8
Q ss_pred CCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcE--EEEEcCCeEEEEEcCCCCCcccccc
Q 014125 135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTK--IFAGYNKSVRVFDVHRPGRDFEKYS 212 (430)
Q Consensus 135 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~d~~i~v~d~~~~~~~~~~~~ 212 (430)
.+.+--|+.|-.-|.|++.|....+..+.+.... ......++++.|-|.+.. +++-.+|.+++||........
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r-~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t---- 256 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEER-LINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGAT---- 256 (636)
T ss_pred CCCCcceEEeeccCceEEecchhhHHHHhhhhcc-cccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCC----
Confidence 5677788999999999999987633322222221 122348999999886643 334589999999874321100
Q ss_pred cccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEE
Q 014125 213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILC 292 (430)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i 292 (430)
. .+....+ .+..++.....+ ..+..++..+.--.+.|...+|+|||++|++.+ .||.+||
T Consensus 257 ----------~--p~~~~~k-~~~~f~i~t~ks------k~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VS-qDGfLRv 316 (636)
T KOG2394|consen 257 ----------A--PSYQALK-DGDQFAILTSKS------KKTRNPVARWHIGEGSINEFAFSPDGKYLATVS-QDGFLRI 316 (636)
T ss_pred ----------C--CcccccC-CCCeeEEeeeec------cccCCccceeEeccccccceeEcCCCceEEEEe-cCceEEE
Confidence 0 0001111 222333222111 112244444544566899999999999999999 9999999
Q ss_pred EeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEe
Q 014125 293 WDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASS 372 (430)
Q Consensus 293 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 372 (430)
||..+.... ...+..-+...|++|||||+||++|++|..|.||.+...+.+..-++|.+.|..++|.|. ..+.
T Consensus 317 F~fdt~eLl----g~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpy---tt~~ 389 (636)
T KOG2394|consen 317 FDFDTQELL----GVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPY---TTST 389 (636)
T ss_pred eeccHHHHH----HHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeeccc---cccc
Confidence 999875321 222445678999999999999999999999999999999999999999999999999972 1111
Q ss_pred e-------CCceee------------ecC---------------CCccccccCCCcEEEEeeccccccc
Q 014125 373 S-------GHRRFP------------VDD---------------FEDLHLSGDENCVSVWSFLYASMME 407 (430)
Q Consensus 373 ~-------~d~~~~------------vw~---------------~~~l~~~~~d~~i~~w~~~~~~~~~ 407 (430)
. .|+... .|. .-.+.++|.|-.+-+||+..+.+..
T Consensus 390 ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~~ 458 (636)
T KOG2394|consen 390 EEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVLVP 458 (636)
T ss_pred ccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhhccc
Confidence 1 111111 111 1127788999999999998765543
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.8e-18 Score=136.54 Aligned_cols=197 Identities=16% Similarity=0.210 Sum_probs=145.6
Q ss_pred ceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCC--CcEEE-EEcCCeEEEEEcCCCCCccccccccc
Q 014125 139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT--GTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLK 215 (430)
Q Consensus 139 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~ 215 (430)
..+|++-..|.|++||..+++.+..++.+.. .+..+.|... ...+. ++.||+|++||++...+....
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~-----~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~----- 110 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPA-----TTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARI----- 110 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCC-----cccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhhe-----
Confidence 5789999999999999999999999998876 6667777663 33344 669999999999985443221
Q ss_pred CCCCCC-CcceEEEEEcCCCCceEEEecC----CCeEEEEEcCCcee-eEE-eeccccCeEEEEEccCCC-EEEEEecCC
Q 014125 216 GNKEGQ-AGIMSAIAFSPTHTGMLAIGSY----SQTSAIYREDNMEL-LYV-LHGQEGGVTHVQFSRDGN-YLYTGGRKD 287 (430)
Q Consensus 216 ~~~~~~-~~~v~~~~~~~~~~~~l~~~~~----dg~v~~~d~~~~~~-~~~-~~~~~~~i~~~~~~~~~~-~l~~~~~~d 287 (430)
....+ ..+..+++.+- ..+++++|++ +-.|.+||.|..+. +.. ...|...|++++|+|... .|++|+ .|
T Consensus 111 -~~~~~~~~~f~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGS-vD 187 (376)
T KOG1188|consen 111 -SWTQQSGTPFICLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGS-VD 187 (376)
T ss_pred -eccCCCCCcceEeeccC-cCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeec-cc
Confidence 11222 24667777765 5668888864 56799999998765 443 457999999999999765 555666 99
Q ss_pred CeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCC-CEEEEEccCCcEEEEEcCCCCeecc
Q 014125 288 PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSG-RHLGTGGQDGLVHIYDLQTGKWISG 349 (430)
Q Consensus 288 ~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~ 349 (430)
|.|.+||+......- .+...-.+...|..+.|..++ +.|.+-+..+...+|+++.+.....
T Consensus 188 GLvnlfD~~~d~EeD-aL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~ 249 (376)
T KOG1188|consen 188 GLVNLFDTKKDNEED-ALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETW 249 (376)
T ss_pred ceEEeeecCCCcchh-hHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhc
Confidence 999999998763321 222223566779999999877 4578888899999999998765443
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-18 Score=140.56 Aligned_cols=277 Identities=14% Similarity=0.239 Sum_probs=183.7
Q ss_pred CCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCccccccc-ccccccCcccceeeecCCCeeeeeeeccccCccCCCC
Q 014125 60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNAC-SLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS 138 (430)
Q Consensus 60 ~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 138 (430)
.+-|.++.|..+|.+||||..+|.|.++.-...... +.... .+..+...........-.++|..+.|.+. .+.
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~-ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~-----~n~ 98 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKG-EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDD-----GNL 98 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeeccccccc-ceeeeeeeeccCcccchhhhhhhhhhhhhceecCC-----CCc
Confidence 456899999999999999999999999975533210 11000 00001111111112223468999999773 345
Q ss_pred ceEEEEeCCCcEEEEeccCCceee---------------ee-----eccc-----------ccccccceEEEEECCCCcE
Q 014125 139 CVFASTTRDHPIHLWDATTGLLRC---------------TY-----RAYD-----------AVDEITAAFSVAFNPTGTK 187 (430)
Q Consensus 139 ~~l~~~~~dg~i~vwd~~~~~~~~---------------~~-----~~~~-----------~~~~~~~v~~~~~~~~~~~ 187 (430)
..++..+.|.+|++|.+....... .+ ..+. ...|.--|.++.++.|+..
T Consensus 99 a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et 178 (433)
T KOG1354|consen 99 AEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKET 178 (433)
T ss_pred cEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccce
Confidence 678888999999999976432111 01 1100 1123446889999999999
Q ss_pred EEEEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceee----EEe--
Q 014125 188 IFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELL----YVL-- 261 (430)
Q Consensus 188 l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~----~~~-- 261 (430)
++++.|=.|.+|+++-....+............-..-|++..|+|..-++++-++..|+|++-|++..... ..+
T Consensus 179 ~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEe 258 (433)
T KOG1354|consen 179 FLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEE 258 (433)
T ss_pred EeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcc
Confidence 99999999999999876655543332222223334568999999988899999999999999999853211 111
Q ss_pred ----------eccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccC---------Ccc---ceEEEE
Q 014125 262 ----------HGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSE---------HTN---QRILFD 319 (430)
Q Consensus 262 ----------~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~---------~~~---~v~~~~ 319 (430)
..--..|..+.|+++|+++++-. =-+|++||+.....+......... ... .-..++
T Consensus 259 pedp~~rsffseiIsSISDvKFs~sGryilsRD--yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~ 336 (433)
T KOG1354|consen 259 PEDPSSRSFFSEIISSISDVKFSHSGRYILSRD--YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECS 336 (433)
T ss_pred ccCCcchhhHHHHhhhhhceEEccCCcEEEEec--cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEE
Confidence 11124688899999999998753 479999999655444433221110 011 223588
Q ss_pred EcCCCCEEEEEccCCcEEEEEcCCC
Q 014125 320 IEPSGRHLGTGGQDGLVHIYDLQTG 344 (430)
Q Consensus 320 ~~~~~~~l~~~~~dg~i~vwd~~~~ 344 (430)
|+.++.++++|+..+.++++++..|
T Consensus 337 ~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 337 WSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred EcCCcceEecccccceEEEecCCCC
Confidence 9999999999999999999996543
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.7e-17 Score=136.10 Aligned_cols=194 Identities=20% Similarity=0.214 Sum_probs=141.9
Q ss_pred EEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCc
Q 014125 177 FSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM 255 (430)
Q Consensus 177 ~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~ 255 (430)
..++|+++|..++++ .||++|+|+.... ........|...|.++.|+| ++.+|++-+.| ..+||+.+++
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~--------~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g 217 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM--------LTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTG 217 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcc--------hhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccC
Confidence 589999999999965 9999999997552 22233456778899999999 67788888888 9999999999
Q ss_pred eeeEEeecc--ccCeEEEEEccCC---C-EEEEEecCCCeEEEEeCCCCceE-EEEeecccCCccceEEEEEcCCCCEEE
Q 014125 256 ELLYVLHGQ--EGGVTHVQFSRDG---N-YLYTGGRKDPYILCWDLRKAVQV-VYKLYRSSEHTNQRILFDIEPSGRHLG 328 (430)
Q Consensus 256 ~~~~~~~~~--~~~i~~~~~~~~~---~-~l~~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~ 328 (430)
..+...... ......+.|+.++ . ++++.-..-+.|+.||+...... ..+..........|++++.+++|++++
T Consensus 218 ~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~A 297 (398)
T KOG0771|consen 218 AALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLA 297 (398)
T ss_pred chhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEE
Confidence 766555422 2346677888776 2 23333324566777666433221 111112123345799999999999999
Q ss_pred EEccCCcEEEEEcCCCCeeccc-ccccCCeeEEEEcCCCcEEEEeeCCceeee
Q 014125 329 TGGQDGLVHIYDLQTGKWISGF-QAAADTVNGFSFHPFLPMAASSSGHRRFPV 380 (430)
Q Consensus 329 ~~~~dg~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~d~~~~v 380 (430)
.|+.||.|-|++..+.+.++.. +.|...|+.+.|+|+.+++++-+.+....|
T Consensus 298 lGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v 350 (398)
T KOG0771|consen 298 LGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAV 350 (398)
T ss_pred EeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeE
Confidence 9999999999999988776655 579999999999999998888776544433
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.7e-17 Score=131.61 Aligned_cols=233 Identities=14% Similarity=0.214 Sum_probs=166.8
Q ss_pred eeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE--cCCeEE
Q 014125 121 SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG--YNKSVR 197 (430)
Q Consensus 121 ~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~--~d~~i~ 197 (430)
.+..+.| +.+...|..|+.|| .+++....-........ ....|..+-|+.. +++ ++ ..+.++
T Consensus 7 ti~~~~~-------Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~-----~~~~IvEmLFSSS--LvaiV~~~qpr~Lk 71 (391)
T KOG2110|consen 7 TINFIGF-------NQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDT-----EGVSIVEMLFSSS--LVAIVSIKQPRKLK 71 (391)
T ss_pred ceeeeee-------ccceeEEEccCCCc-eeEEecCchHHhhcccC-----CCeEEEEeecccc--eeEEEecCCCceEE
Confidence 4555556 67788899999999 78888765433111111 1125666667643 444 44 335688
Q ss_pred EEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeec---cccCeEEEEEc
Q 014125 198 VFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG---QEGGVTHVQFS 274 (430)
Q Consensus 198 v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~---~~~~i~~~~~~ 274 (430)
++++...... .. ......|.++.++. +.|+++-.+. |+|||+++.+.+.++.. +...+.+++++
T Consensus 72 v~~~Kk~~~I----Ce-----~~fpt~IL~VrmNr---~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n 138 (391)
T KOG2110|consen 72 VVHFKKKTTI----CE-----IFFPTSILAVRMNR---KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPN 138 (391)
T ss_pred EEEcccCceE----EE-----EecCCceEEEEEcc---ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccC
Confidence 8888653110 00 11234588888854 3566665544 99999999999887763 34456677777
Q ss_pred cCCCEEEEEe-cCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCc-EEEEEcCCCCeeccccc
Q 014125 275 RDGNYLYTGG-RKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGL-VHIYDLQTGKWISGFQA 352 (430)
Q Consensus 275 ~~~~~l~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~ 352 (430)
+.+.+++.-+ ...|.|.+||+.+-.... .+ ..|.+.+.+++|+++|.+||++++.|+ |||+.+.+|+.+++|+.
T Consensus 139 ~~n~ylAyp~s~t~GdV~l~d~~nl~~v~-~I---~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRR 214 (391)
T KOG2110|consen 139 NANCYLAYPGSTTSGDVVLFDTINLQPVN-TI---NAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRR 214 (391)
T ss_pred CCCceEEecCCCCCceEEEEEcccceeee-EE---EecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeC
Confidence 7777888644 256899999998875432 33 589999999999999999999999998 89999999999999975
Q ss_pred ccC--CeeEEEEcCCCcEEEEeeCCceeeecCCCc
Q 014125 353 AAD--TVNGFSFHPFLPMAASSSGHRRFPVDDFED 385 (430)
Q Consensus 353 ~~~--~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~ 385 (430)
... .|.+++|+|++++|++.+..++|+|+..+.
T Consensus 215 G~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 215 GTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred CceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 544 588999999999999999988888885443
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.3e-16 Score=128.16 Aligned_cols=230 Identities=18% Similarity=0.212 Sum_probs=166.2
Q ss_pred CCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCc
Q 014125 60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC 139 (430)
Q Consensus 60 ~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (430)
..+|+|.+|++|+..+|.+.....|.||.....+. .........|...|+.++| +|..+
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~--------------w~~~htls~Hd~~vtgvdW-------ap~sn 68 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADL--------------WEPAHTLSEHDKIVTGVDW-------APKSN 68 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCC--------------ceeceehhhhCcceeEEee-------cCCCC
Confidence 46799999999999999999999999999876542 1122234457789999999 66788
Q ss_pred eEEEEeCCCcEEEEec-cCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccccccccCC
Q 014125 140 VFASTTRDHPIHLWDA-TTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGN 217 (430)
Q Consensus 140 ~l~~~~~dg~i~vwd~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~ 217 (430)
.|++|+.|..-++|.. ..++...++... .....++++.|+|.+..+++| ....|.||-++..+.=+ ..+..
T Consensus 69 rIvtcs~drnayVw~~~~~~~WkptlvLl---RiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWW----VsKhi 141 (361)
T KOG1523|consen 69 RIVTCSHDRNAYVWTQPSGGTWKPTLVLL---RINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWW----VSKHI 141 (361)
T ss_pred ceeEccCCCCccccccCCCCeeccceeEE---EeccceeeEeecCcCceEEeccCccEEEEEEEeccccee----hhhhh
Confidence 9999999999999998 444433333221 122288999999999999966 66788888887633211 11222
Q ss_pred CCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcC-----C-------------ceeeEEeeccccCeEEEEEccCCCE
Q 014125 218 KEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED-----N-------------MELLYVLHGQEGGVTHVQFSRDGNY 279 (430)
Q Consensus 218 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~-----~-------------~~~~~~~~~~~~~i~~~~~~~~~~~ 279 (430)
...+.+.|+++.|+| ++-++++|+.|+..++|..- + |+.+..+....+.+..+.|+|+|..
T Consensus 142 kkPirStv~sldWhp-nnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~ 220 (361)
T KOG1523|consen 142 KKPIRSTVTSLDWHP-NNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNR 220 (361)
T ss_pred CCccccceeeeeccC-CcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCE
Confidence 345667899999999 77899999999999998631 1 1223333345678999999999999
Q ss_pred EEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcC
Q 014125 280 LYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEP 322 (430)
Q Consensus 280 l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 322 (430)
|+-.+ .|..+.+-|...+.+...... ...-+..++.|-.
T Consensus 221 lawv~-Hds~v~~~da~~p~~~v~~~~---~~~lP~ls~~~is 259 (361)
T KOG1523|consen 221 LAWVG-HDSTVSFVDAAGPSERVQSVA---TAQLPLLSVSWIS 259 (361)
T ss_pred eeEec-CCCceEEeecCCCchhccchh---hccCCceeeEeec
Confidence 99999 999999999887653322221 1224555666644
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.79 E-value=8e-18 Score=140.00 Aligned_cols=201 Identities=23% Similarity=0.296 Sum_probs=150.7
Q ss_pred eEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEE
Q 014125 64 KGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFAS 143 (430)
Q Consensus 64 ~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 143 (430)
.+++|+++|..|++|+.||++|||++++.....+ +..|...|.++.| +|||+.|++
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~-----------------e~~~~~eV~DL~F-------S~dgk~las 203 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILE-----------------EIAHHAEVKDLDF-------SPDGKFLAS 203 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhh-----------------hHhhcCcccccee-------CCCCcEEEE
Confidence 7899999999999999999999999876543322 3345579999999 889999999
Q ss_pred EeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCC---cEE-EEE--cCCeEEEEEcCCCCCcccccccccCC
Q 014125 144 TTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG---TKI-FAG--YNKSVRVFDVHRPGRDFEKYSTLKGN 217 (430)
Q Consensus 144 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l-~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~ 217 (430)
-+.| ..+||+..++..+........ ......+.|+.++ .+. ++. ..+.|+.|++...... .+....+.
T Consensus 204 ig~d-~~~VW~~~~g~~~a~~t~~~k---~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~--~~l~~~~~ 277 (398)
T KOG0771|consen 204 IGAD-SARVWSVNTGAALARKTPFSK---DEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS--NFLRLRKK 277 (398)
T ss_pred ecCC-ceEEEEeccCchhhhcCCccc---chhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc--cccchhhh
Confidence 9999 899999999966665543222 1245577787776 333 333 4577888877543221 00111111
Q ss_pred CCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEe-eccccCeEEEEEccCCCEEEEEecCCCeEEEEeCC
Q 014125 218 KEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVL-HGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR 296 (430)
Q Consensus 218 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~ 296 (430)
......|++++.++ ++++++.|+.||.|.+++..+.+.++.. +.|...|+.+.|+|+.+++++.+ .|....+..+.
T Consensus 278 -~~~~~siSsl~VS~-dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svS-s~~~~~v~~l~ 354 (398)
T KOG0771|consen 278 -IKRFKSISSLAVSD-DGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVS-SDNEAAVTKLA 354 (398)
T ss_pred -hhccCcceeEEEcC-CCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccc-cCCceeEEEEe
Confidence 12234699999999 7789999999999999999988776554 47899999999999999999988 88888887765
Q ss_pred C
Q 014125 297 K 297 (430)
Q Consensus 297 ~ 297 (430)
.
T Consensus 355 v 355 (398)
T KOG0771|consen 355 V 355 (398)
T ss_pred e
Confidence 4
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.6e-16 Score=128.48 Aligned_cols=284 Identities=15% Similarity=0.174 Sum_probs=179.6
Q ss_pred CCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCc
Q 014125 60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC 139 (430)
Q Consensus 60 ~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (430)
+-.+..++|++.-..+|++..|-.|++|+-... ....+.......|.+++|.|. .+.
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst-----------------~pt~Lks~sQrnvtclawRPl------sas 154 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSST-----------------CPTKLKSVSQRNVTCLAWRPL------SAS 154 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCC-----------------CCceecchhhcceeEEEeccC------Ccc
Confidence 445888999998788999999999999987641 122233334568999999885 234
Q ss_pred eEEEEeCCCcEEEEeccCC----ceee-----eeecccccccccceEEEEECCCCcEEEE-E-cCCeEEEEEcCCCCCcc
Q 014125 140 VFASTTRDHPIHLWDATTG----LLRC-----TYRAYDAVDEITAAFSVAFNPTGTKIFA-G-YNKSVRVFDVHRPGRDF 208 (430)
Q Consensus 140 ~l~~~~~dg~i~vwd~~~~----~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~-~d~~i~v~d~~~~~~~~ 208 (430)
.|+.|+..| |.+|..... ..+. ..+.....+| .+|+++.|++||..+++ + .|..|+|||.+++...
T Consensus 155 elavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~- 231 (445)
T KOG2139|consen 155 ELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKI- 231 (445)
T ss_pred eeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcc-
Confidence 788888888 999986532 1111 0111111122 48999999999999994 4 7899999999885331
Q ss_pred cccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCC
Q 014125 209 EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDP 288 (430)
Q Consensus 209 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~ 288 (430)
.+. ....+.++-+.|+| ++..|++++.|+..++|+..............+.|...+|+|.|++|+.++ .|
T Consensus 232 ----pL~---~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~--sg 301 (445)
T KOG2139|consen 232 ----PLI---PKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFAC--SG 301 (445)
T ss_pred ----ccc---ccCCCceeeEEEcC-CCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEE--cC
Confidence 111 22345688999999 566888889999999996554333223333456899999999999888776 34
Q ss_pred eEEEEeCCCCceE-----------EEEeec---------ccCCccceEEEEEcCCCCEEEEEccCC--------cEEEEE
Q 014125 289 YILCWDLRKAVQV-----------VYKLYR---------SSEHTNQRILFDIEPSGRHLGTGGQDG--------LVHIYD 340 (430)
Q Consensus 289 ~i~i~d~~~~~~~-----------~~~~~~---------~~~~~~~v~~~~~~~~~~~l~~~~~dg--------~i~vwd 340 (430)
.-++|.+.-..+. ...... ..-..+.+.+++|+|.|.+||+.-..+ .|.+||
T Consensus 302 sp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fd 381 (445)
T KOG2139|consen 302 SPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFD 381 (445)
T ss_pred CceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhc
Confidence 4455554321110 000000 011245678899999999999876543 366777
Q ss_pred cCCCCeecccc-c--ccCCeeEEEEcC---CCcEEEEeeCCceee
Q 014125 341 LQTGKWISGFQ-A--AADTVNGFSFHP---FLPMAASSSGHRRFP 379 (430)
Q Consensus 341 ~~~~~~~~~~~-~--~~~~v~~~~~~~---~~~~l~s~~~d~~~~ 379 (430)
.+..-.+.-.. + ......-|.|+| ++.+|..+=..|.+.
T Consensus 382 tr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq 426 (445)
T KOG2139|consen 382 TRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQ 426 (445)
T ss_pred ccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceE
Confidence 76543322110 1 011245566665 344555554444333
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4e-19 Score=149.23 Aligned_cols=231 Identities=14% Similarity=0.122 Sum_probs=187.9
Q ss_pred eccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCC
Q 014125 127 WFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGR 206 (430)
Q Consensus 127 ~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~ 206 (430)
|-|....++.+|..|+.|+.-|.+..+|+.+++....+.... .|.++.|-.+.++++++..+.++|||-...
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~E------tv~Dv~~LHneq~~AVAQK~y~yvYD~~Gt-- 201 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVME------TVRDVTFLHNEQFFAVAQKKYVYVYDNNGT-- 201 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhh------hhhhhhhhcchHHHHhhhhceEEEecCCCc--
Confidence 344444558899999999999999999999999988887765 788999999999999999999999996531
Q ss_pred cccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecC
Q 014125 207 DFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRK 286 (430)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 286 (430)
.+. .+ .....|..+.|-| .-.+|++++..|.++--|+.+|+.+..+..-.+.+..++-+|-+..+-+|. .
T Consensus 202 ElH---Cl-----k~~~~v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Gh-s 271 (545)
T KOG1272|consen 202 ELH---CL-----KRHIRVARLEFLP-YHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGH-S 271 (545)
T ss_pred EEe---eh-----hhcCchhhhcccc-hhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcC-C
Confidence 111 11 1124588899999 667899999999999999999999999988888999999999998888888 9
Q ss_pred CCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCC
Q 014125 287 DPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFL 366 (430)
Q Consensus 287 d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 366 (430)
.|+|.+|......... ....|.++|.++++.++|+|++|.+.|..++|||++....+.++.. ..+...+++|..|
T Consensus 272 nGtVSlWSP~skePLv----KiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg 346 (545)
T KOG1272|consen 272 NGTVSLWSPNSKEPLV----KILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG 346 (545)
T ss_pred CceEEecCCCCcchHH----HHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc
Confidence 9999999988765433 3357999999999999999999999999999999998876666654 4467788888544
Q ss_pred cEEEEeeCCceeeecC
Q 014125 367 PMAASSSGHRRFPVDD 382 (430)
Q Consensus 367 ~~l~s~~~d~~~~vw~ 382 (430)
+++++....+.||.
T Consensus 347 --lLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 347 --LLALSYGDHVQIWK 360 (545)
T ss_pred --ceeeecCCeeeeeh
Confidence 33444445677783
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.5e-16 Score=128.31 Aligned_cols=277 Identities=16% Similarity=0.191 Sum_probs=181.8
Q ss_pred EEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEE-E
Q 014125 65 GIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFA-S 143 (430)
Q Consensus 65 ~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~-~ 143 (430)
-++|||+|+++|+++.- .+.|-|..+-+...-+ ..-..|..+.| ..|..+++ .
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf------------------~cldki~yieW-------~ads~~ilC~ 66 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLF------------------LCLDKIVYIEW-------KADSCHILCV 66 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHH------------------HHHHHhhheee-------eccceeeeee
Confidence 37899999999999876 6777777654432111 11145666777 44555544 5
Q ss_pred EeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCCcccccccccCCCCCC
Q 014125 144 TTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQ 221 (430)
Q Consensus 144 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~ 221 (430)
...++.|.+|++...+....+..... ++.+++|+|+|+.|+ .+ .+-.|.+|.+.+...... .-.
T Consensus 67 ~yk~~~vqvwsl~Qpew~ckIdeg~a-----gls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~---------~~p 132 (447)
T KOG4497|consen 67 AYKDPKVQVWSLVQPEWYCKIDEGQA-----GLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL---------PHP 132 (447)
T ss_pred eeccceEEEEEeecceeEEEeccCCC-----cceeeeECCCcceEeeeecceeEEEEEEeccceeEEe---------ccc
Confidence 57788999999998888777776554 889999999998877 44 789999999987432111 111
Q ss_pred CcceEEEEEcCCCCceEEEecC-C-----------------------------------CeEEEEEcCCceeeEEeeccc
Q 014125 222 AGIMSAIAFSPTHTGMLAIGSY-S-----------------------------------QTSAIYREDNMELLYVLHGQE 265 (430)
Q Consensus 222 ~~~v~~~~~~~~~~~~l~~~~~-d-----------------------------------g~v~~~d~~~~~~~~~~~~~~ 265 (430)
...+..++|+| ++++.+..+. | ..+.+||.--.-.+..+. ..
T Consensus 133 K~~~kg~~f~~-dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe-~~ 210 (447)
T KOG4497|consen 133 KTNVKGYAFHP-DGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE-RG 210 (447)
T ss_pred ccCceeEEECC-CCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee-ec
Confidence 12246667777 3334443322 1 123334322111111111 22
Q ss_pred cCeEEEEEccCCCEEEEEecCCCeEEEEeCCC---------------Cc-------------------------------
Q 014125 266 GGVTHVQFSRDGNYLYTGGRKDPYILCWDLRK---------------AV------------------------------- 299 (430)
Q Consensus 266 ~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~---------------~~------------------------------- 299 (430)
-.+..++|+|.+++|++|+ .|+.+|+.+--+ ..
T Consensus 211 lG~k~v~wsP~~qflavGs-yD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~ 289 (447)
T KOG4497|consen 211 LGLKFVEWSPCNQFLAVGS-YDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIW 289 (447)
T ss_pred cceeEEEeccccceEEeec-cchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCcc
Confidence 4688999999999999999 999988754210 00
Q ss_pred -----------eE--EEEe---ecccCCccceEEEEEcCCCCEEEEEccC--CcEEEEEcCCCCeecccccccCCeeEEE
Q 014125 300 -----------QV--VYKL---YRSSEHTNQRILFDIEPSGRHLGTGGQD--GLVHIYDLQTGKWISGFQAAADTVNGFS 361 (430)
Q Consensus 300 -----------~~--~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~vwd~~~~~~~~~~~~~~~~v~~~~ 361 (430)
.. ...+ .........+.-++|++|..|+++-.+. +.+.+||++..+....+. ...+|....
T Consensus 290 ~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~ 368 (447)
T KOG4497|consen 290 EESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFE 368 (447)
T ss_pred ccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEE
Confidence 00 0000 0011123446679999999999987653 569999999877655554 557999999
Q ss_pred EcCCCcEEEEeeCCceeeecCCCc
Q 014125 362 FHPFLPMAASSSGHRRFPVDDFED 385 (430)
Q Consensus 362 ~~~~~~~l~s~~~d~~~~vw~~~~ 385 (430)
|+|....|+.+.+..++.+|...-
T Consensus 369 WdP~~prL~vctg~srLY~W~psg 392 (447)
T KOG4497|consen 369 WDPGRPRLVVCTGKSRLYFWAPSG 392 (447)
T ss_pred eCCCCceEEEEcCCceEEEEcCCC
Confidence 999999999999888888886544
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.4e-17 Score=128.92 Aligned_cols=201 Identities=16% Similarity=0.182 Sum_probs=158.9
Q ss_pred ceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcC
Q 014125 175 AAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED 253 (430)
Q Consensus 175 ~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~ 253 (430)
+|+|.+|++|...++.+ ....|.||.....+ .++ ....+..|...|+.++|+| ..+.|++++.|..-++|...
T Consensus 12 pitchAwn~drt~iAv~~~~~evhiy~~~~~~-~w~----~~htls~Hd~~vtgvdWap-~snrIvtcs~drnayVw~~~ 85 (361)
T KOG1523|consen 12 PITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD-LWE----PAHTLSEHDKIVTGVDWAP-KSNRIVTCSHDRNAYVWTQP 85 (361)
T ss_pred ceeeeeecCCCceEEeccCCceEEEEEecCCC-Cce----eceehhhhCcceeEEeecC-CCCceeEccCCCCccccccC
Confidence 89999999999999977 67799999987632 122 2233467888999999999 78899999999999999984
Q ss_pred Cc---eeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEE
Q 014125 254 NM---ELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTG 330 (430)
Q Consensus 254 ~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 330 (430)
.+ ++.-.+..+....+++.|+|.++.+++++ ....|.+|-++....-.........+.+.|++++|+|++-+|++|
T Consensus 86 ~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgS-gar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 86 SGGTWKPTLVLLRINRAATCVKWSPKENKFAVGS-GARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG 164 (361)
T ss_pred CCCeeccceeEEEeccceeeEeecCcCceEEecc-CccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence 33 44555666889999999999999999999 889999988776543222222224567889999999999999999
Q ss_pred ccCCcEEEEEcC-----C-------------CCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeecC
Q 014125 331 GQDGLVHIYDLQ-----T-------------GKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDD 382 (430)
Q Consensus 331 ~~dg~i~vwd~~-----~-------------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~ 382 (430)
+.|+..+|+..- . |+++.++....+.|..+.|+|+|..|+-.+.|..+.+-|
T Consensus 165 s~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~d 234 (361)
T KOG1523|consen 165 STDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVD 234 (361)
T ss_pred ccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEee
Confidence 999999998742 1 233444544567899999999999999999888887753
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.2e-15 Score=118.20 Aligned_cols=240 Identities=13% Similarity=0.213 Sum_probs=161.5
Q ss_pred eeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEE
Q 014125 63 LKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFA 142 (430)
Q Consensus 63 v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 142 (430)
..+++|+.|...++.|..+| .+||+.+--+.... ......+-.+..+-| ..++|+
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~---------------r~~~~~G~~~veMLf---------R~N~la 62 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESAS---------------RQFIDGGFKIVEMLF---------RSNYLA 62 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCchhhhhh---------------hccccCchhhhhHhh---------hhceEE
Confidence 44599999999999988887 79999874211100 000111112222222 112333
Q ss_pred -EEeCC------CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCccccccccc
Q 014125 143 -STTRD------HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLK 215 (430)
Q Consensus 143 -~~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~ 215 (430)
+|+.+ ..+.|||=...+++.++.... +|.++.+.++ .|++-..+.|.||.....-+....+.+.
T Consensus 63 LVGGg~~pky~pNkviIWDD~k~~~i~el~f~~------~I~~V~l~r~--riVvvl~~~I~VytF~~n~k~l~~~et~- 133 (346)
T KOG2111|consen 63 LVGGGSRPKYPPNKVIIWDDLKERCIIELSFNS------EIKAVKLRRD--RIVVVLENKIYVYTFPDNPKLLHVIETR- 133 (346)
T ss_pred EecCCCCCCCCCceEEEEecccCcEEEEEEecc------ceeeEEEcCC--eEEEEecCeEEEEEcCCChhheeeeecc-
Confidence 33333 469999977777777766554 8899999655 6777788999999987533322222111
Q ss_pred CCCCCCCcceEEEEEcCCCCceEEE-ecCCCeEEEEEcCCcee--eEEeeccccCeEEEEEccCCCEEEEEecCCCe-EE
Q 014125 216 GNKEGQAGIMSAIAFSPTHTGMLAI-GSYSQTSAIYREDNMEL--LYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPY-IL 291 (430)
Q Consensus 216 ~~~~~~~~~v~~~~~~~~~~~~l~~-~~~dg~v~~~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~-i~ 291 (430)
..+..+.+++-+. +..+||. |..-|.|.|-|+...+. ...+.+|...|.|++.+-+|..+|+++ ..|+ ||
T Consensus 134 ----~NPkGlC~~~~~~-~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaS-tkGTLIR 207 (346)
T KOG2111|consen 134 ----SNPKGLCSLCPTS-NKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATAS-TKGTLIR 207 (346)
T ss_pred ----cCCCceEeecCCC-CceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEec-cCcEEEE
Confidence 1111233333322 2334444 44569999999987665 477889999999999999999999999 6665 89
Q ss_pred EEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCC
Q 014125 292 CWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTG 344 (430)
Q Consensus 292 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 344 (430)
|||..++.... .+ +.......|.+++|||++.+|+++|+.|+++|+.++..
T Consensus 208 IFdt~~g~~l~-E~-RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 208 IFDTEDGTLLQ-EL-RRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EEEcCCCcEee-ee-ecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 99999986553 33 22455678999999999999999999999999998753
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.7e-17 Score=140.03 Aligned_cols=209 Identities=14% Similarity=0.210 Sum_probs=157.8
Q ss_pred ceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEE
Q 014125 73 SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHL 152 (430)
Q Consensus 73 ~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~v 152 (430)
..|+.++.||.+.|.+-.. ........|.+.+.+-.| +|+|.-|+++++||.|++
T Consensus 76 d~~~i~s~DGkf~il~k~~------------------rVE~sv~AH~~A~~~gRW-------~~dGtgLlt~GEDG~iKi 130 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSA------------------RVERSISAHAAAISSGRW-------SPDGAGLLTAGEDGVIKI 130 (737)
T ss_pred ceEEEEcCCceEEEecccc------------------hhhhhhhhhhhhhhhccc-------CCCCceeeeecCCceEEE
Confidence 4788889999998876432 122233446678999999 779999999999999999
Q ss_pred EeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcC
Q 014125 153 WDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSP 232 (430)
Q Consensus 153 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 232 (430)
|.- +|....++..... +|.|++|.|+...++-+..+.+.|=-+..... ......|.+.|.++.|++
T Consensus 131 WSr-sGMLRStl~Q~~~-----~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k--------~i~WkAHDGiiL~~~W~~ 196 (737)
T KOG1524|consen 131 WSR-SGMLRSTVVQNEE-----SIRCARWAPNSNSIVFCQGGHISIKPLAANSK--------IIRWRAHDGLVLSLSWST 196 (737)
T ss_pred Eec-cchHHHHHhhcCc-----eeEEEEECCCCCceEEecCCeEEEeecccccc--------eeEEeccCcEEEEeecCc
Confidence 985 4443333332222 89999999999888877677777765543221 112368899999999999
Q ss_pred CCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCc
Q 014125 233 THTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHT 312 (430)
Q Consensus 233 ~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 312 (430)
..+++++|++|-..++||.. |..+..-..|+.+|++++|+|+ +.++.++ -+++|+= ....
T Consensus 197 -~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~S--~nt~R~~---------------~p~~ 256 (737)
T KOG1524|consen 197 -QSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLLWS--YNTARFS---------------SPRV 256 (737)
T ss_pred -cccceeecCCceeEEeeccc-CcccccCChhccceeeeeeccc-cceeeee--eeeeeec---------------CCCc
Confidence 77899999999999999975 6777777789999999999999 5555554 4455521 2345
Q ss_pred cceEEEEEcCCCCEEEEEccCCcEEEEE
Q 014125 313 NQRILFDIEPSGRHLGTGGQDGLVHIYD 340 (430)
Q Consensus 313 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd 340 (430)
+.|..++||+||..+++|+..|.+.+-.
T Consensus 257 GSifnlsWS~DGTQ~a~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 257 GSIFNLSWSADGTQATCGTSTGQLIVAY 284 (737)
T ss_pred cceEEEEEcCCCceeeccccCceEEEee
Confidence 6788999999999999999999876543
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.8e-15 Score=129.76 Aligned_cols=291 Identities=14% Similarity=0.137 Sum_probs=178.9
Q ss_pred ceE-EEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCee-eeeeeccccCccCCCCceEEEEeCCCcE
Q 014125 73 SSF-LTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESV-YDFCWFPHMSASDPTSCVFASTTRDHPI 150 (430)
Q Consensus 73 ~~l-~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~l~~~~~dg~i 150 (430)
+++ ++-..++.|.|.|..+.+....+. .+..+ ..+.+ +|||+++++++.||.|
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~------------------~~~~~h~~~~~-------s~Dgr~~yv~~rdg~v 60 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIP------------------TGGAPHAGLKF-------SPDGRYLYVANRDGTV 60 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-------------------STTEEEEEE--------TT-SSEEEEEETTSEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEc------------------CCCCceeEEEe-------cCCCCEEEEEcCCCeE
Confidence 344 456678999999998764432221 11222 22344 8899999999999999
Q ss_pred EEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE--cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEE
Q 014125 151 HLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG--YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAI 228 (430)
Q Consensus 151 ~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 228 (430)
.++|+.+++.+.+++... ...++++++||++++++ ..+.+.++|.++... ...+.............+..+
T Consensus 61 sviD~~~~~~v~~i~~G~------~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~-v~~I~~~~~~~~~~~~Rv~aI 133 (369)
T PF02239_consen 61 SVIDLATGKVVATIKVGG------NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEP-VKTIPTGGMPVDGPESRVAAI 133 (369)
T ss_dssp EEEETTSSSEEEEEE-SS------EEEEEEE--TTTEEEEEEEETTEEEEEETTT--E-EEEEE--EE-TTTS---EEEE
T ss_pred EEEECCcccEEEEEecCC------CcceEEEcCCCCEEEEEecCCCceeEeccccccc-eeecccccccccccCCCceeE
Confidence 999999999999887755 56789999999999955 689999999876321 111111111111244567888
Q ss_pred EEcCCCCceEEEecCCCeEEEEEcCCceeeE-EeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeec
Q 014125 229 AFSPTHTGMLAIGSYSQTSAIYREDNMELLY-VLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYR 307 (430)
Q Consensus 229 ~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~ 307 (430)
..+|....+++.--+.+.|.+.|....+.+. .............|+|++++++++...++.|.++|..+.+.....-..
T Consensus 134 v~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g 213 (369)
T PF02239_consen 134 VASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTG 213 (369)
T ss_dssp EE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-S
T ss_pred EecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeecc
Confidence 8888444455556667999999977654332 222234567789999999998887767889999998775432211000
Q ss_pred cc--------------------C-----------------C-------------ccceEEEEEcCCCCEEEEE----ccC
Q 014125 308 SS--------------------E-----------------H-------------TNQRILFDIEPSGRHLGTG----GQD 333 (430)
Q Consensus 308 ~~--------------------~-----------------~-------------~~~v~~~~~~~~~~~l~~~----~~d 333 (430)
.. . + .+.-.-+..+|+++++.+. ...
T Consensus 214 ~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~ 293 (369)
T PF02239_consen 214 KKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDA 293 (369)
T ss_dssp SSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSH
T ss_pred ccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCC
Confidence 00 0 0 0111346678999999888 445
Q ss_pred CcEEEEEcCCCCeecccccccC-CeeEEEEcCCCcEEEEeeCCceeeecCCCccccccCCCcEEEEeecccccccccC
Q 014125 334 GLVHIYDLQTGKWISGFQAAAD-TVNGFSFHPFLPMAASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYASMMENAD 410 (430)
Q Consensus 334 g~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~~~~~~~ 410 (430)
+.|.++|..+.+.+..+....+ .+..+.|+++|+.+..+..+ .++.|.++|-.+-+.+..+.
T Consensus 294 ~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~---------------~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 294 DTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWD---------------GNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp T-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE-----------------TTEEEEEETTTTEEEEEEE
T ss_pred ceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEec---------------CCCEEEEEECCCcEEEEEEE
Confidence 7899999999988877764333 59999999999977766543 23367777777666555444
|
... |
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.6e-16 Score=144.34 Aligned_cols=244 Identities=17% Similarity=0.198 Sum_probs=166.1
Q ss_pred cCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCC--cEE-EEEcCCeEEEEEcCCCC-Cccc
Q 014125 134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG--TKI-FAGYNKSVRVFDVHRPG-RDFE 209 (430)
Q Consensus 134 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l-~~~~d~~i~v~d~~~~~-~~~~ 209 (430)
++|-...++++...-.|+|||.+.++....|..... ....|+.+.+-.+. .++ +++.||.|+||+-.... ...+
T Consensus 1072 ~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~--~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~e 1149 (1387)
T KOG1517|consen 1072 FHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAF--PDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPE 1149 (1387)
T ss_pred ecCCCceeEEcCCcceEEEEecccCceeccccCCCC--CCCccceeeeecccchhheeeeccCceEEEecccccccCCce
Confidence 355566889988778899999999988777765542 22367788775432 333 46699999999865543 2222
Q ss_pred cc---ccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeec-cccCeEEEEEcc-CCCEEEEEe
Q 014125 210 KY---STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG-QEGGVTHVQFSR-DGNYLYTGG 284 (430)
Q Consensus 210 ~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~-~~~~i~~~~~~~-~~~~l~~~~ 284 (430)
.. ..+.....+..+.-.-+.|....+ .|++++.-..|+|||......+..+.. ....|+++.-+- .|+.+++|.
T Consensus 1150 LVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G-~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGf 1228 (1387)
T KOG1517|consen 1150 LVTAWSSLSDQLPGARGTGLVVDWQQQSG-HLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGF 1228 (1387)
T ss_pred eEEeeccccccCccCCCCCeeeehhhhCC-eEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEee
Confidence 11 122222222222234567777455 555555588999999998877766653 334577776543 467888888
Q ss_pred cCCCeEEEEeCCCCceEEEEeecccCCccc--eEEEEEcCCCC-EEEEEccCCcEEEEEcCCCCe--eccccccc--C-C
Q 014125 285 RKDPYILCWDLRKAVQVVYKLYRSSEHTNQ--RILFDIEPSGR-HLGTGGQDGLVHIYDLQTGKW--ISGFQAAA--D-T 356 (430)
Q Consensus 285 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~--~-~ 356 (430)
.||.|++||.+...... .......|... |..+.+.+.|- .|++|+.||.|++||++.... ...+..|. + .
T Consensus 1229 -aDGsvRvyD~R~a~~ds-~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~ 1306 (1387)
T KOG1517|consen 1229 -ADGSVRVYDRRMAPPDS-LVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSA 1306 (1387)
T ss_pred -cCCceEEeecccCCccc-cceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCcc
Confidence 99999999998764421 11112345555 99999998774 499999999999999997422 22223333 3 5
Q ss_pred eeEEEEcCCCcEEEEeeCCceeeecCC
Q 014125 357 VNGFSFHPFLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 357 v~~~~~~~~~~~l~s~~~d~~~~vw~~ 383 (430)
.+++..|+....+|+|+. +.++||+.
T Consensus 1307 lTal~VH~hapiiAsGs~-q~ikIy~~ 1332 (1387)
T KOG1517|consen 1307 LTALTVHEHAPIIASGSA-QLIKIYSL 1332 (1387)
T ss_pred ceeeeeccCCCeeeecCc-ceEEEEec
Confidence 899999999999999998 88888854
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.1e-16 Score=134.75 Aligned_cols=277 Identities=16% Similarity=0.218 Sum_probs=190.9
Q ss_pred cCCCceeEEEECcCCceE-EEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCC
Q 014125 58 IPNNFLKGIKWSPDGSSF-LTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP 136 (430)
Q Consensus 58 ~h~~~v~~~~~sp~~~~l-~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 136 (430)
.|...-+.|..+|||+|+ |||.+--.|++||+....+..+-.. ...+. .|-|. +.
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhl------------------Dae~V--~feiL----sD 104 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHL------------------DAEVV--DFEIL----SD 104 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecc------------------cccce--eEEEe----cc
Confidence 456677899999999975 5677788999999986543222111 11111 11111 33
Q ss_pred CCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECC-CCcEEEEEcCCeEEEEEcCCCCCccccccccc
Q 014125 137 TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNP-TGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLK 215 (430)
Q Consensus 137 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~ 215 (430)
|-..++.-..|.+|.+..-. |. -..++.+ ..-..++++. ...++++|....|+-++++.+ .+.
T Consensus 105 D~SK~v~L~~DR~IefHak~-G~-hy~~RIP------~~GRDm~y~~~scDly~~gsg~evYRlNLEqG--------rfL 168 (703)
T KOG2321|consen 105 DYSKSVFLQNDRTIEFHAKY-GR-HYRTRIP------KFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQG--------RFL 168 (703)
T ss_pred chhhheEeecCceeeehhhc-Ce-eeeeecC------cCCccccccCCCccEEEeecCcceEEEEcccc--------ccc
Confidence 33344555566666554321 11 1111111 1334566654 345666778888999999873 233
Q ss_pred CCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEee------cccc-----CeEEEEEccCCCEEEEEe
Q 014125 216 GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH------GQEG-----GVTHVQFSRDGNYLYTGG 284 (430)
Q Consensus 216 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~------~~~~-----~i~~~~~~~~~~~l~~~~ 284 (430)
..+....+.+.++..++ ...+|++|+.+|.|..||.++...+..+. .|.+ .|+++.|+.+|-.+++|.
T Consensus 169 ~P~~~~~~~lN~v~in~-~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGt 247 (703)
T KOG2321|consen 169 NPFETDSGELNVVSINE-EHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGT 247 (703)
T ss_pred cccccccccceeeeecC-ccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeec
Confidence 33344457799999999 66699999999999999999876655543 2333 499999999999999999
Q ss_pred cCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCC--CCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEE
Q 014125 285 RKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPS--GRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSF 362 (430)
Q Consensus 285 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 362 (430)
.+|.+.|||++...+....- +....+|..+.|.+. +..|++. ....++|||-.+|+....+.. ...+..+++
T Consensus 248 -s~G~v~iyDLRa~~pl~~kd---h~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEp-t~~lND~C~ 321 (703)
T KOG2321|consen 248 -STGSVLIYDLRASKPLLVKD---HGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEP-TSDLNDFCF 321 (703)
T ss_pred -cCCcEEEEEcccCCceeecc---cCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeeccc-cCCcCceee
Confidence 99999999999986654332 566778999999776 3445544 346799999999999888774 446999999
Q ss_pred cCCCcEEEEeeCCceeeec
Q 014125 363 HPFLPMAASSSGHRRFPVD 381 (430)
Q Consensus 363 ~~~~~~l~s~~~d~~~~vw 381 (430)
-|++.+++++-.+..+..+
T Consensus 322 ~p~sGm~f~Ane~~~m~~y 340 (703)
T KOG2321|consen 322 VPGSGMFFTANESSKMHTY 340 (703)
T ss_pred ecCCceEEEecCCCcceeE
Confidence 9999999999877666554
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.9e-18 Score=141.89 Aligned_cols=264 Identities=17% Similarity=0.249 Sum_probs=193.9
Q ss_pred ceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceE
Q 014125 62 FLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF 141 (430)
Q Consensus 62 ~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 141 (430)
.-+.+.++.+|+.|+.|+.-|.|--+|+.++++..++.. .+.|.++.|.. +..++
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v------------------~Etv~Dv~~LH-------neq~~ 185 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV------------------METVRDVTFLH-------NEQFF 185 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh------------------hhhhhhhhhhc-------chHHH
Confidence 346789999999999999999999999998866544333 35888888843 34455
Q ss_pred EEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCCcccccccccCCCCC
Q 014125 142 ASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFEKYSTLKGNKEG 220 (430)
Q Consensus 142 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~ 220 (430)
|++ ....++|||- .|..+..++.+. .|..+.|-|-.-+|++ +..|.++.-|+..+. +...+..
T Consensus 186 AVA-QK~y~yvYD~-~GtElHClk~~~------~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~Gk--------lVa~~~t 249 (545)
T KOG1272|consen 186 AVA-QKKYVYVYDN-NGTELHCLKRHI------RVARLEFLPYHFLLVAASEAGFLKYQDVSTGK--------LVASIRT 249 (545)
T ss_pred Hhh-hhceEEEecC-CCcEEeehhhcC------chhhhcccchhheeeecccCCceEEEeechhh--------hhHHHHc
Confidence 555 4566999995 455555555544 7888999999888884 478999999998743 2222334
Q ss_pred CCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCce
Q 014125 221 QAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQ 300 (430)
Q Consensus 221 ~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~ 300 (430)
..+.+..++-+| -...+-+|...|+|.+|.....+++..+..|.++|.+|++.++|.|++++| .|..++|||++...+
T Consensus 250 ~~G~~~vm~qNP-~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG-~Dr~~kIWDlR~~~q 327 (545)
T KOG1272|consen 250 GAGRTDVMKQNP-YNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTG-LDRKVKIWDLRNFYQ 327 (545)
T ss_pred cCCccchhhcCC-ccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecc-cccceeEeeeccccc
Confidence 456788889999 666899999999999999999999999999999999999999999999999 999999999998764
Q ss_pred EEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcC-CC----CeecccccccCCeeEEEEcCCCcEEEEeeCC
Q 014125 301 VVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQ-TG----KWISGFQAAADTVNGFSFHPFLPMAASSSGH 375 (430)
Q Consensus 301 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~-~~----~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 375 (430)
+. .... ..+...+++|..| +++.+....|.||.=. .+ +..+.-....++|.++.|.|-...|-.|-.-
T Consensus 328 l~-t~~t----p~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~ 400 (545)
T KOG1272|consen 328 LH-TYRT----PHPASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAG 400 (545)
T ss_pred cc-eeec----CCCcccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccC
Confidence 43 2211 3345567787655 3344455579999522 21 1111111223489999999977766665443
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.75 E-value=6e-16 Score=144.97 Aligned_cols=222 Identities=16% Similarity=0.179 Sum_probs=149.2
Q ss_pred eecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCc-------eeeeeecccccccccceEEEEECCCCcE
Q 014125 115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGL-------LRCTYRAYDAVDEITAAFSVAFNPTGTK 187 (430)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 187 (430)
...|...|..++-+ ++.+.+|++|+.||+|++|++..-. ...++.. ....+.++...+.+..
T Consensus 1044 L~Ehs~~v~k~a~s------~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~-----~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVS------SEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSP-----EGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred hhhccccccceeec------CCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEec-----cCCceEEEEeccCCCe
Confidence 34455666666653 4566899999999999999986421 1222222 2237888888899999
Q ss_pred EEE-EcCCeEEEEEcCCCCCcccccccccCCCCCCCc-ceEEEEEcCCCCc-eEEEecCCCeEEEEEcCCceeeEEee--
Q 014125 188 IFA-GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAG-IMSAIAFSPTHTG-MLAIGSYSQTSAIYREDNMELLYVLH-- 262 (430)
Q Consensus 188 l~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~-~l~~~~~dg~v~~~d~~~~~~~~~~~-- 262 (430)
+++ +.||.|++.+++....................+ .+..-+|...... .++.+..-+.|..||.+.......++
T Consensus 1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence 985 599999999998732222111111111122223 3344455554444 78888999999999999876555443
Q ss_pred ccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCC---CEEEEEc--cCCcEE
Q 014125 263 GQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSG---RHLGTGG--QDGLVH 337 (430)
Q Consensus 263 ~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~--~dg~i~ 337 (430)
...+.|++++.+|.+.+++.|. ..|.+.+||+|-....... ..++..++..+..+|-. ...++++ ..+.|.
T Consensus 1193 ~~hG~vTSi~idp~~~WlviGt-s~G~l~lWDLRF~~~i~sw---~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs 1268 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWCNWLVIGT-SRGQLVLWDLRFRVPILSW---EHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVS 1268 (1431)
T ss_pred ccccceeEEEecCCceEEEEec-CCceEEEEEeecCceeecc---cCcccCCcceEEeeccCCCCceEEEecccCCCcee
Confidence 2347899999999999999999 9999999999976443221 14455777777777643 3444444 467899
Q ss_pred EEEcCCCCeecccc
Q 014125 338 IYDLQTGKWISGFQ 351 (430)
Q Consensus 338 vwd~~~~~~~~~~~ 351 (430)
+|++.+|..-..+-
T Consensus 1269 ~wn~~~g~~~~vl~ 1282 (1431)
T KOG1240|consen 1269 TWNMETGLRQTVLW 1282 (1431)
T ss_pred eeecccCcceEEEE
Confidence 99999886555443
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.6e-16 Score=143.04 Aligned_cols=204 Identities=18% Similarity=0.137 Sum_probs=134.4
Q ss_pred CCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcC---CeEEEEEcCCCCCcccccccccCCCCCCC
Q 014125 147 DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYN---KSVRVFDVHRPGRDFEKYSTLKGNKEGQA 222 (430)
Q Consensus 147 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d---~~i~v~d~~~~~~~~~~~~~~~~~~~~~~ 222 (430)
+..|.+||..... ...+..+.. .+.+..|+|+|+.|+ ++.+ ..|++||+.++... . + ....++
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~-----~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~--~---l-~~~~g~- 249 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQ-----PLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARK--V---V-ASFRGH- 249 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCC-----ccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceE--E---E-ecCCCc-
Confidence 4689999986554 333433332 688999999999988 4432 47999999764221 1 1 111222
Q ss_pred cceEEEEEcCCCCceEEEecCCCeEEEE--EcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCce
Q 014125 223 GIMSAIAFSPTHTGMLAIGSYSQTSAIY--REDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQ 300 (430)
Q Consensus 223 ~~v~~~~~~~~~~~~l~~~~~dg~v~~~--d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~ 300 (430)
...++|+|++..++++.+.+|.+.|| |+.+++. ..+..+...+....|+|||+.|+.++..++...+|++.....
T Consensus 250 --~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~ 326 (429)
T PRK01742 250 --NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGG 326 (429)
T ss_pred --cCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 34689999655444555567765554 6655554 445556677889999999998887664678888887754322
Q ss_pred EEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCC
Q 014125 301 VVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGH 375 (430)
Q Consensus 301 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 375 (430)
....+ .+.. ....|+|+|++|+.++.++ +.+||+.+++.......+ ....+.|+|+|++|+.++.+
T Consensus 327 ~~~~l----~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~ 392 (429)
T PRK01742 327 GASLV----GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQ 392 (429)
T ss_pred CeEEe----cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcC
Confidence 22222 1222 3578999999998887765 666999988754322222 33567899999999998854
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.2e-17 Score=137.04 Aligned_cols=279 Identities=16% Similarity=0.207 Sum_probs=201.1
Q ss_pred ecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECC---CCcEEEEEc
Q 014125 116 VTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNP---TGTKIFAGY 192 (430)
Q Consensus 116 ~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~ 192 (430)
-.|.+.|..+.| +..|..|++|+.|..|.+||+..++....+... |...|....|-| +...+.++.
T Consensus 139 ~~H~GcVntV~F-------N~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SG----H~~NvfQaKFiP~s~d~ti~~~s~ 207 (559)
T KOG1334|consen 139 NKHKGCVNTVHF-------NQRGDVLASGSDDLQVVVWDWVSGSPKLSFESG----HCNNVFQAKFIPFSGDRTIVTSSR 207 (559)
T ss_pred cCCCCccceeee-------cccCceeeccCccceEEeehhhccCcccccccc----cccchhhhhccCCCCCcCceeccc
Confidence 346678888888 678999999999999999999998877665542 222444445555 334444779
Q ss_pred CCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEe---ecccc---
Q 014125 193 NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVL---HGQEG--- 266 (430)
Q Consensus 193 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~---~~~~~--- 266 (430)
||.+++=.+...+.. .-......|.++|..++..|+...-|.+++.|+.+.-+|++...+...+ ..+..
T Consensus 208 dgqvr~s~i~~t~~~-----e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v 282 (559)
T KOG1334|consen 208 DGQVRVSEILETGYV-----ENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERV 282 (559)
T ss_pred cCceeeeeeccccce-----ecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccce
Confidence 999999887653321 1123346788999999999999999999999999999999987543333 22333
Q ss_pred CeEEEEEccCCC-EEEEEecCCCeEEEEeCCCCceE-----EEEee---cccCCccceEEEEEcCCCCEEEEEccCCcEE
Q 014125 267 GVTHVQFSRDGN-YLYTGGRKDPYILCWDLRKAVQV-----VYKLY---RSSEHTNQRILFDIEPSGRHLGTGGQDGLVH 337 (430)
Q Consensus 267 ~i~~~~~~~~~~-~l~~~~~~d~~i~i~d~~~~~~~-----~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 337 (430)
....++..|... .+++++ .|..+++||.+..... +..+. ........|++++|+.++.-|+++-.|-.|+
T Consensus 283 ~L~~Ia~~P~nt~~faVgG-~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IY 361 (559)
T KOG1334|consen 283 GLYTIAVDPRNTNEFAVGG-SDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIY 361 (559)
T ss_pred eeeeEecCCCCccccccCC-hhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceE
Confidence 577899999776 677777 9999999998754221 11110 0013456789999997776666666777899
Q ss_pred EEEcCC--C----------Ceec-ccccccC--CeeEEEE-cCCCcEEEEeeCCceeeecCCCc----------------
Q 014125 338 IYDLQT--G----------KWIS-GFQAAAD--TVNGFSF-HPFLPMAASSSGHRRFPVDDFED---------------- 385 (430)
Q Consensus 338 vwd~~~--~----------~~~~-~~~~~~~--~v~~~~~-~~~~~~l~s~~~d~~~~vw~~~~---------------- 385 (430)
++.-.. | ..+. .+++|.. .|.++-| -|...++++|+.-|.|.||+...
T Consensus 362 LF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNC 441 (559)
T KOG1334|consen 362 LFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNC 441 (559)
T ss_pred EeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEec
Confidence 995432 2 1222 3778866 5777765 68899999999999999996543
Q ss_pred ---------cccccCCCcEEEEeecccccccccCC
Q 014125 386 ---------LHLSGDENCVSVWSFLYASMMENADG 411 (430)
Q Consensus 386 ---------l~~~~~d~~i~~w~~~~~~~~~~~~~ 411 (430)
|+++|-|..|+||.....+....+.+
T Consensus 442 LEpHP~~PvLAsSGid~DVKIWTP~~~er~~~~~~ 476 (559)
T KOG1334|consen 442 LEPHPHLPVLASSGIDHDVKIWTPLTAERATEPTL 476 (559)
T ss_pred cCCCCCCchhhccCCccceeeecCCccccccChhh
Confidence 89999999999998866665555444
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-14 Score=125.76 Aligned_cols=289 Identities=19% Similarity=0.280 Sum_probs=182.3
Q ss_pred ceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceE
Q 014125 62 FLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF 141 (430)
Q Consensus 62 ~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 141 (430)
+++..++|++|+++|.+.. ..++|++...... .+.... ..++++.| +|.+.+|
T Consensus 36 ~~~v~~~S~~G~lfA~~~~-~~v~i~~~~~~~~------------------~lt~~~-~~~~~L~f-------SP~g~yL 88 (566)
T KOG2315|consen 36 PCNVFAYSNNGRLFAYSDN-QVVKVFEIATLKV------------------VLCVEL-KKTYDLLF-------SPKGNYL 88 (566)
T ss_pred cceeEEEcCCCcEEEEEcC-CeEEEEEccCCcE------------------EEEecc-ceeeeeee-------ccccccc
Confidence 3778899999999887665 5899998876521 111112 26778888 5556665
Q ss_pred EEE-------eC---CCcEEEEeccCCceeeeeecccc-----------------------------------cccccce
Q 014125 142 AST-------TR---DHPIHLWDATTGLLRCTYRAYDA-----------------------------------VDEITAA 176 (430)
Q Consensus 142 ~~~-------~~---dg~i~vwd~~~~~~~~~~~~~~~-----------------------------------~~~~~~v 176 (430)
.+= .. .-.+.+|+++++.....++.... .-+...|
T Consensus 89 ~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i 168 (566)
T KOG2315|consen 89 LTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGI 168 (566)
T ss_pred ccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccce
Confidence 542 11 23477999887544333322111 0012234
Q ss_pred EEEEECCCC--cEEEE------EcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecC--C--
Q 014125 177 FSVAFNPTG--TKIFA------GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY--S-- 244 (430)
Q Consensus 177 ~~~~~~~~~--~~l~~------~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--d-- 244 (430)
..+.++|.+ ..+++ |.-..|+||.....+.. .......-....-..+.|++-+..+|+..+. |
T Consensus 169 ~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~-----~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDkt 243 (566)
T KOG2315|consen 169 TMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQH-----QPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKT 243 (566)
T ss_pred eeEEecCCCCCceEEEEccCCCCCCcEEEEecccccccc-----chhhhccccccceeEEEeccCCceEEEEEEEeecCC
Confidence 455555542 22221 12245666655421110 0000000111123456777766666655543 2
Q ss_pred -------CeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEE-ecCCCeEEEEeCCCCceEEEEeecccCCccceE
Q 014125 245 -------QTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTG-GRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRI 316 (430)
Q Consensus 245 -------g~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~ 316 (430)
.+++++++........+. ..++|.++.|+|+++.++++ |.+--.+.|||++.. ++. .-..++-+
T Consensus 244 n~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~--~v~-----df~egpRN 315 (566)
T KOG2315|consen 244 NASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK--PVF-----DFPEGPRN 315 (566)
T ss_pred CccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC--EeE-----eCCCCCcc
Confidence 357777777444444444 57899999999999765543 337789999999875 221 22456677
Q ss_pred EEEEcCCCCEEEEEccC---CcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCCCccccccCCC
Q 014125 317 LFDIEPSGRHLGTGGQD---GLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFEDLHLSGDEN 393 (430)
Q Consensus 317 ~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~l~~~~~d~ 393 (430)
++-|+|.|++|+.++-+ |.|-|||+.+.+.+..+.... -+-+.|+|||.+++|++..-+++| |+
T Consensus 316 ~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrv-----------dN 382 (566)
T KOG2315|consen 316 TAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRV-----------DN 382 (566)
T ss_pred ceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEe-----------cC
Confidence 89999999999888765 789999999999888887544 355799999999999999888887 88
Q ss_pred cEEEEeeccc
Q 014125 394 CVSVWSFLYA 403 (430)
Q Consensus 394 ~i~~w~~~~~ 403 (430)
.++||++...
T Consensus 383 g~KiwhytG~ 392 (566)
T KOG2315|consen 383 GIKIWHYTGS 392 (566)
T ss_pred CeEEEEecCc
Confidence 8999998743
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.4e-15 Score=125.57 Aligned_cols=275 Identities=16% Similarity=0.176 Sum_probs=191.4
Q ss_pred CCCceeEEEECcCCc--eEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCC
Q 014125 59 PNNFLKGIKWSPDGS--SFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP 136 (430)
Q Consensus 59 h~~~v~~~~~sp~~~--~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 136 (430)
-...|+.++|.-+++ .|...+.|..+....+........... .........+|..+..
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~-----------~~~~~l~~~~I~gl~~--------- 113 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDD-----------AKTVSLGTKSIKGLKL--------- 113 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCcccccccc-----------ccccccccccccchhh---------
Confidence 345578888876554 555555677777777766544322210 0111222345665554
Q ss_pred CCceEEEEeCCCcEEEEeccCCc----eeeeeecccccccccceEEEEECCCCcEEEE--EcC--CeEEEEEcCCCCCcc
Q 014125 137 TSCVFASTTRDHPIHLWDATTGL----LRCTYRAYDAVDEITAAFSVAFNPTGTKIFA--GYN--KSVRVFDVHRPGRDF 208 (430)
Q Consensus 137 ~~~~l~~~~~dg~i~vwd~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~d--~~i~v~d~~~~~~~~ 208 (430)
....|++|-.+|.+.+|..+.+. ....+..+. .+..+.-++....|++ |.. ..+.+||+....+.+
T Consensus 114 ~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~------g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw 187 (412)
T KOG3881|consen 114 ADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGP------GLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIW 187 (412)
T ss_pred cCCEEEEEecCCcEEEEeccCCccccccceeeecCC------ceeeeccCCCCCceEecCchhcccceeeeecccceeee
Confidence 24478889999999999988543 222223222 5666777777766663 455 789999998753333
Q ss_pred cccccccCCC-CCCCcceEEEEEcCCC--CceEEEecCCCeEEEEEcCCc-eeeEEeeccccCeEEEEEccCCCEEEEEe
Q 014125 209 EKYSTLKGNK-EGQAGIMSAIAFSPTH--TGMLAIGSYSQTSAIYREDNM-ELLYVLHGQEGGVTHVQFSRDGNYLYTGG 284 (430)
Q Consensus 209 ~~~~~~~~~~-~~~~~~v~~~~~~~~~--~~~l~~~~~dg~v~~~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 284 (430)
.........+ -.-+-+++++.|-+ + .+.|++++.-+.|++||.+.+ +++..+.-.+.+++++...|++++++++.
T Consensus 188 ~aKNvpnD~L~LrVPvW~tdi~Fl~-g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn 266 (412)
T KOG3881|consen 188 SAKNVPNDRLGLRVPVWITDIRFLE-GSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGN 266 (412)
T ss_pred eccCCCCccccceeeeeeccceecC-CCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEec
Confidence 2211111111 11234678889988 5 779999999999999999876 57778887788999999999999999999
Q ss_pred cCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcC
Q 014125 285 RKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHP 364 (430)
Q Consensus 285 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 364 (430)
.-+.+..||++.+......+ .+..+.+.++..+|.+++|++++-|..|+|+|+.+.+++.... -...++.|.+.+
T Consensus 267 -~~g~l~~FD~r~~kl~g~~~---kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvY-vKs~lt~il~~~ 341 (412)
T KOG3881|consen 267 -TKGQLAKFDLRGGKLLGCGL---KGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY-VKSRLTFILLRD 341 (412)
T ss_pred -ccchhheecccCceeecccc---CCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhh-hhccccEEEecC
Confidence 99999999999885443222 5778899999999999999999999999999999977765443 234566777755
Q ss_pred C
Q 014125 365 F 365 (430)
Q Consensus 365 ~ 365 (430)
+
T Consensus 342 ~ 342 (412)
T KOG3881|consen 342 D 342 (412)
T ss_pred C
Confidence 4
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.9e-16 Score=122.58 Aligned_cols=159 Identities=19% Similarity=0.284 Sum_probs=113.0
Q ss_pred EEEEEcCCCCceEEEecC---------CCeEEEEEcCCc-eeeEEeec-cccCeEEEEEccCCCEEEEEe-cCCCeEEEE
Q 014125 226 SAIAFSPTHTGMLAIGSY---------SQTSAIYREDNM-ELLYVLHG-QEGGVTHVQFSRDGNYLYTGG-RKDPYILCW 293 (430)
Q Consensus 226 ~~~~~~~~~~~~l~~~~~---------dg~v~~~d~~~~-~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~-~~d~~i~i~ 293 (430)
..+.|+|.+..+++.... -+...+|.++.. .....+.- ..++|.+++|+|+|+.+++.. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 467888866666555542 134555555332 23333332 345799999999999876553 257899999
Q ss_pred eCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccC---CcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEE
Q 014125 294 DLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQD---GLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAA 370 (430)
Q Consensus 294 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 370 (430)
|++. .....+ ....+..+.|+|+|++|++|+.+ |.|.+||+++.+.+.... | ..++.++|+|+|++|+
T Consensus 89 d~~~--~~i~~~-----~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ 159 (194)
T PF08662_consen 89 DVKG--KKIFSF-----GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLA 159 (194)
T ss_pred cCcc--cEeEee-----cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEE
Confidence 9973 222222 34567789999999999998754 669999999888887765 3 3478999999999999
Q ss_pred EeeCCceeeecCCCccccccCCCcEEEEeecccc
Q 014125 371 SSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYAS 404 (430)
Q Consensus 371 s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~ 404 (430)
+++...+.++ |+.++||++....
T Consensus 160 ta~t~~r~~~-----------dng~~Iw~~~G~~ 182 (194)
T PF08662_consen 160 TATTSPRLRV-----------DNGFKIWSFQGRL 182 (194)
T ss_pred EEEeccceec-----------cccEEEEEecCeE
Confidence 9987655543 8899999996443
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=5e-16 Score=121.48 Aligned_cols=272 Identities=13% Similarity=0.188 Sum_probs=172.0
Q ss_pred ccccCCCCCcceeeecceeecc-cCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCccccee
Q 014125 36 LIRFDVPPHRTYHFYNQFRTSS-IPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL 114 (430)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (430)
...|.+...+... .+. .|+..|+.+.--|+ ..|.+-+.|+.+.+|++.....
T Consensus 37 V~~w~lqt~r~~~------~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~-------------------- 89 (323)
T KOG0322|consen 37 VKMWVLQTERDLP------LIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAF-------------------- 89 (323)
T ss_pred EEEEEeecCccch------hhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcce--------------------
Confidence 3445555555544 344 56788999999987 5788999999999999975321
Q ss_pred eecCCCeeeeeeeccccCccCCCC--ceEEEEeCCCc-EEEEeccCCceeeeeecccccccccceEEEEECC-CC-cEE-
Q 014125 115 VVTEGESVYDFCWFPHMSASDPTS--CVFASTTRDHP-IHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNP-TG-TKI- 188 (430)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~~~~~~~--~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~-~~l- 188 (430)
...|.-.+.++.|++....-.+.. ..++.-++... +.+-|......++... .......+.+.+..+.. .+ .++
T Consensus 90 i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~d-d~~~~Klgsvmc~~~~~~c~s~~ll 168 (323)
T KOG0322|consen 90 ISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIAD-DSERSKLGSVMCQDKDHACGSTFLL 168 (323)
T ss_pred EEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccC-chhccccCceeeeeccccccceEEE
Confidence 112223555566655432211111 12222221111 2222222211121111 11222334566665432 23 333
Q ss_pred EEE-cCCeEEEEEcCCCCCccc--ccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCc--e--eeEEe
Q 014125 189 FAG-YNKSVRVFDVHRPGRDFE--KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM--E--LLYVL 261 (430)
Q Consensus 189 ~~~-~d~~i~v~d~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~--~--~~~~~ 261 (430)
++| .+|.+.+||+..+..... ...........|..++.++.|.+ ....=++|+.+..+..|++... . ....+
T Consensus 169 laGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas-~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~ 247 (323)
T KOG0322|consen 169 LAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYAS-SCDRGISGGADDKLVMYSLNHSTGSLQIRKEI 247 (323)
T ss_pred EEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeech-hhcCCcCCCccccceeeeeccccCcccccceE
Confidence 367 899999999988533221 12233344567889999999988 4445577888888889987643 1 11222
Q ss_pred eccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEc
Q 014125 262 HGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDL 341 (430)
Q Consensus 262 ~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 341 (430)
......|..+..-||++.++++| .|+.||+|..++..... ....|...|.+++|+|+...+|+++.|++|.+|++
T Consensus 248 ~lknpGv~gvrIRpD~KIlATAG-WD~RiRVyswrtl~pLA----VLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 248 TLKNPGVSGVRIRPDGKILATAG-WDHRIRVYSWRTLNPLA----VLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EecCCCccceEEccCCcEEeecc-cCCcEEEEEeccCCchh----hhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 22345688999999999999999 99999999999885432 22578899999999999999999999999999986
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.7e-15 Score=125.00 Aligned_cols=253 Identities=15% Similarity=0.162 Sum_probs=183.2
Q ss_pred CCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecc-cccccccceEEEEECCCCcEEEEEcCCeE
Q 014125 118 EGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAY-DAVDEITAAFSVAFNPTGTKIFAGYNKSV 196 (430)
Q Consensus 118 ~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~d~~i 196 (430)
....+..++|.- .+....|...+.+..+..+.............. .......+|..++.. ++.+++|-.+|.+
T Consensus 54 ~~~ris~l~~~~-----d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-dg~Litc~~sG~l 127 (412)
T KOG3881|consen 54 ELDRISSLLFGV-----DGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-DGTLITCVSSGNL 127 (412)
T ss_pred hhhhhhhheeec-----CCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-CCEEEEEecCCcE
Confidence 335677788842 445566766667777887777766554443111 001112255555543 6666667799999
Q ss_pred EEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCC--CeEEEEEcCCceeeEEeecc---------c
Q 014125 197 RVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS--QTSAIYREDNMELLYVLHGQ---------E 265 (430)
Q Consensus 197 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~v~~~d~~~~~~~~~~~~~---------~ 265 (430)
.+|....+.........+ .....+..+.-++....++++|+.. ..+.+||+...+.+..-+.- .
T Consensus 128 ~~~~~k~~d~hss~l~~l-----a~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVP 202 (412)
T KOG3881|consen 128 QVRHDKSGDLHSSKLIKL-----ATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVP 202 (412)
T ss_pred EEEeccCCccccccceee-----ecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceee
Confidence 999987543211111111 1113466677777677888999998 88999999988665543321 1
Q ss_pred cCeEEEEEccC--CCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCC
Q 014125 266 GGVTHVQFSRD--GNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQT 343 (430)
Q Consensus 266 ~~i~~~~~~~~--~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 343 (430)
-.++++.|-+. ...|+++. .-+.+++||.+...+++..+ .....+++++...|+|++|++|..-|.+..||++.
T Consensus 203 vW~tdi~Fl~g~~~~~fat~T-~~hqvR~YDt~~qRRPV~~f---d~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~ 278 (412)
T KOG3881|consen 203 VWITDIRFLEGSPNYKFATIT-RYHQVRLYDTRHQRRPVAQF---DFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRG 278 (412)
T ss_pred eeeccceecCCCCCceEEEEe-cceeEEEecCcccCcceeEe---ccccCcceeeeecCCCcEEEEecccchhheecccC
Confidence 24678899887 77899998 89999999999887776555 44578899999999999999999999999999999
Q ss_pred CCeecc-cccccCCeeEEEEcCCCcEEEEeeCCceeeecCCCc
Q 014125 344 GKWISG-FQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFED 385 (430)
Q Consensus 344 ~~~~~~-~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~ 385 (430)
++.+.. +++-.+.|++|..+|.+++|++++-|+.++|+|...
T Consensus 279 ~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 279 GKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred ceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence 998877 888999999999999999999999777777776544
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.2e-15 Score=133.70 Aligned_cols=219 Identities=13% Similarity=0.136 Sum_probs=144.3
Q ss_pred cCCCeeeeeeeccccCccCCCCceEEEEeC---CCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-E-
Q 014125 117 TEGESVYDFCWFPHMSASDPTSCVFASTTR---DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-G- 191 (430)
Q Consensus 117 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~- 191 (430)
.+...+...+| +|||+.|+..+. +..|.+|++.+++......... .+....|+|||+.|+. .
T Consensus 196 ~~~~~~~~p~w-------SPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~------~~~~~~~SPDG~~La~~~~ 262 (429)
T PRK03629 196 RSPQPLMSPAW-------SPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPR------HNGAPAFSPDGSKLAFALS 262 (429)
T ss_pred cCCCceeeeEE-------cCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCC------CcCCeEECCCCCEEEEEEc
Confidence 34457888899 789998886542 4579999998876543322211 3346899999998883 2
Q ss_pred cCC--eEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCe--EEEEEcCCceeeEEeeccccC
Q 014125 192 YNK--SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQT--SAIYREDNMELLYVLHGQEGG 267 (430)
Q Consensus 192 ~d~--~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--v~~~d~~~~~~~~~~~~~~~~ 267 (430)
.++ .|++||+..+.. ..+ ..+...+....|+|++..++++...++. |+++|+.+++.. .+..+...
T Consensus 263 ~~g~~~I~~~d~~tg~~-----~~l----t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~ 332 (429)
T PRK03629 263 KTGSLNLYVMDLASGQI-----RQV----TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQ 332 (429)
T ss_pred CCCCcEEEEEECCCCCE-----EEc----cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCC
Confidence 344 588889875321 111 1223356788999965544455444454 555566665443 33334445
Q ss_pred eEEEEEccCCCEEEEEecCC--CeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCc---EEEEEcC
Q 014125 268 VTHVQFSRDGNYLYTGGRKD--PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGL---VHIYDLQ 342 (430)
Q Consensus 268 i~~~~~~~~~~~l~~~~~~d--~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~---i~vwd~~ 342 (430)
.....|+|+|++|+..+..+ ..|.+||+.++... .+.. . .......|+|||++|+.++.++. +++++++
T Consensus 333 ~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~--~Lt~--~--~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~ 406 (429)
T PRK03629 333 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ--VLTD--T--FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD 406 (429)
T ss_pred ccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE--EeCC--C--CCCCCceECCCCCEEEEEEcCCCceEEEEEECC
Confidence 66789999999998876333 35888999876432 2211 1 12345789999999999888764 6777774
Q ss_pred CCCeecccccccCCeeEEEEcCC
Q 014125 343 TGKWISGFQAAADTVNGFSFHPF 365 (430)
Q Consensus 343 ~~~~~~~~~~~~~~v~~~~~~~~ 365 (430)
++....+.+|.+.+...+|+|-
T Consensus 407 -G~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 407 -GRFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred -CCCeEECccCCCCcCCcccCCC
Confidence 6666777788888999999983
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=5e-15 Score=134.48 Aligned_cols=220 Identities=19% Similarity=0.244 Sum_probs=141.0
Q ss_pred cCCCeeeeeeeccccCccCCCCceEEEEeCC---CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-E-E
Q 014125 117 TEGESVYDFCWFPHMSASDPTSCVFASTTRD---HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-A-G 191 (430)
Q Consensus 117 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~-~ 191 (430)
.+...+.+.+| +|||+.|+..+.+ ..|.+||+.+++....... .. ...+..|+|||+.|+ + +
T Consensus 193 ~~~~~v~~p~w-------SPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~-~g-----~~~~~~~SPDG~~la~~~~ 259 (427)
T PRK02889 193 SSPEPIISPAW-------SPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANF-KG-----SNSAPAWSPDGRTLAVALS 259 (427)
T ss_pred cCCCCcccceE-------cCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecC-CC-----CccceEECCCCCEEEEEEc
Confidence 34567888888 7799988877643 3599999998875433222 11 445789999999887 3 3
Q ss_pred cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEc--CCceeeEEeeccccCeE
Q 014125 192 YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRE--DNMELLYVLHGQEGGVT 269 (430)
Q Consensus 192 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~--~~~~~~~~~~~~~~~i~ 269 (430)
.++...+|.++..+.... .+ ..+........|+|++..+++++..+|...+|.+ .+++.. .+........
T Consensus 260 ~~g~~~Iy~~d~~~~~~~---~l----t~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-~lt~~g~~~~ 331 (427)
T PRK02889 260 RDGNSQIYTVNADGSGLR---RL----TQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-RVTFTGSYNT 331 (427)
T ss_pred cCCCceEEEEECCCCCcE---EC----CCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-EEecCCCCcC
Confidence 677767776543222111 11 2223345667899966655555555566666654 444332 2222233445
Q ss_pred EEEEccCCCEEEEEecCCC---eEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCC---cEEEEEcCC
Q 014125 270 HVQFSRDGNYLYTGGRKDP---YILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDG---LVHIYDLQT 343 (430)
Q Consensus 270 ~~~~~~~~~~l~~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~vwd~~~ 343 (430)
..+|+|+|++|+..+ .++ .|.+||+.++... .+.. ........|+|+|+.|+.++.++ .+++.++ +
T Consensus 332 ~~~~SpDG~~Ia~~s-~~~g~~~I~v~d~~~g~~~--~lt~----~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~ 403 (427)
T PRK02889 332 SPRISPDGKLLAYIS-RVGGAFKLYVQDLATGQVT--ALTD----TTRDESPSFAPNGRYILYATQQGGRSVLAAVSS-D 403 (427)
T ss_pred ceEECCCCCEEEEEE-ccCCcEEEEEEECCCCCeE--EccC----CCCccCceECCCCCEEEEEEecCCCEEEEEEEC-C
Confidence 689999999998877 443 6999999876432 2211 12235689999999988777544 3666666 4
Q ss_pred CCeecccccccCCeeEEEEcCC
Q 014125 344 GKWISGFQAAADTVNGFSFHPF 365 (430)
Q Consensus 344 ~~~~~~~~~~~~~v~~~~~~~~ 365 (430)
++....+..+.+.+...+|+|-
T Consensus 404 g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 404 GRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred CCceEEeecCCCCCCCCccCCC
Confidence 6666666667777888899874
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.6e-16 Score=128.39 Aligned_cols=251 Identities=13% Similarity=0.137 Sum_probs=172.5
Q ss_pred eecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeeccc--ccccccceEEEEECCCCcEEEEE-
Q 014125 115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYD--AVDEITAAFSVAFNPTGTKIFAG- 191 (430)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~- 191 (430)
...|.+.|.++.| +.+++.|++|+.|..+++|+++.--..++-+... ...|...|.|++|...++++++|
T Consensus 52 ~~~H~GCiNAlqF-------S~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~ 124 (609)
T KOG4227|consen 52 VREHTGCINALQF-------SHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGE 124 (609)
T ss_pred hhhhccccceeee-------ccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCC
Confidence 3457788999999 7789999999999999999986532222111111 11234589999999999999866
Q ss_pred cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCce-e--eEEeeccccCe
Q 014125 192 YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME-L--LYVLHGQEGGV 268 (430)
Q Consensus 192 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~-~--~~~~~~~~~~i 268 (430)
.+++|..-|+.+..... .. ......+.|..+..+| -.+.|++.+.++.|.+||.+... . ...+.......
T Consensus 125 ~~~~VI~HDiEt~qsi~----V~--~~~~~~~~VY~m~~~P-~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F 197 (609)
T KOG4227|consen 125 RWGTVIKHDIETKQSIY----VA--NENNNRGDVYHMDQHP-TDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNF 197 (609)
T ss_pred CcceeEeeecccceeee----ee--cccCcccceeecccCC-CCceEEEEecCceEEEEeccCCCCCCceeeecCCCccc
Confidence 89999999998742211 11 1123345899999999 57899999999999999998754 2 22222344567
Q ss_pred EEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCc---cceEEEEEcCCCCEEEEEccCCcEEEEEcCCCC
Q 014125 269 THVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHT---NQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGK 345 (430)
Q Consensus 269 ~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 345 (430)
..+.|+|....|+...+..+-+-+||.+.....+.......+-. ..-..+.|+|+|..+.+--...--.+||+-+.+
T Consensus 198 ~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R 277 (609)
T KOG4227|consen 198 YTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQR 277 (609)
T ss_pred eeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeeccc
Confidence 88999997765554444788899999997755443322112211 223567899999888776655556677777643
Q ss_pred e-eccccccc-------CCeeEEEEcCCCcEEEEeeCCceeeec
Q 014125 346 W-ISGFQAAA-------DTVNGFSFHPFLPMAASSSGHRRFPVD 381 (430)
Q Consensus 346 ~-~~~~~~~~-------~~v~~~~~~~~~~~l~s~~~d~~~~vw 381 (430)
+ +..+. |. ..+.+++|..+.. +++|+.+-.+.+|
T Consensus 278 ~~V~k~D-~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~W 319 (609)
T KOG4227|consen 278 CFVLKSD-HNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIW 319 (609)
T ss_pred ceeEecc-CCCCcceeeeeeeeeeeeccee-eeccCcccceEEE
Confidence 3 33332 22 2467788876555 8899999999999
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.7e-15 Score=120.77 Aligned_cols=236 Identities=17% Similarity=0.262 Sum_probs=159.0
Q ss_pred CeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCC-cEEEEEcCCeEEE
Q 014125 120 ESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG-TKIFAGYNKSVRV 198 (430)
Q Consensus 120 ~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~d~~i~v 198 (430)
..+..++|+++. ..++++..|-.|++|+-.. +....++... ...|.+++|-|.+ ..|+.+..+.|.+
T Consensus 99 ~dlr~~aWhqH~-------~~fava~nddvVriy~kss-t~pt~Lks~s----QrnvtclawRPlsaselavgCr~gIci 166 (445)
T KOG2139|consen 99 IDLRGVAWHQHI-------IAFAVATNDDVVRIYDKSS-TCPTKLKSVS----QRNVTCLAWRPLSASELAVGCRAGICI 166 (445)
T ss_pred cceeeEeechhh-------hhhhhhccCcEEEEeccCC-CCCceecchh----hcceeEEEeccCCcceeeeeecceeEE
Confidence 467889997653 3588999999999999776 4444444322 2389999999976 5566787888999
Q ss_pred EEcCCCCCcccccc---c--cc-CCCCCCCcceEEEEEcCCCCceEEEec-CCCeEEEEEcCCceeeEEeeccccCeEEE
Q 014125 199 FDVHRPGRDFEKYS---T--LK-GNKEGQAGIMSAIAFSPTHTGMLAIGS-YSQTSAIYREDNMELLYVLHGQEGGVTHV 271 (430)
Q Consensus 199 ~d~~~~~~~~~~~~---~--~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~v~~~d~~~~~~~~~~~~~~~~i~~~ 271 (430)
|..+.......... . .. ....+| .+|++|.|++|+. .+++++ .|..|.+||..++..+.......+.++-+
T Consensus 167 W~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt-~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slL 244 (445)
T KOG2139|consen 167 WSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT-ILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLL 244 (445)
T ss_pred EEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC-EEeecccCcceEEEEcCCCCCcccccccCCCceeeE
Confidence 98876433222110 0 00 011233 6899999999655 555555 57889999999987765554456789999
Q ss_pred EEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCC-C-----
Q 014125 272 QFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTG-K----- 345 (430)
Q Consensus 272 ~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~----- 345 (430)
.|||||.+|+++. -|+..++|......... +..-..+.|...+|+|+|++|+.+.. |.-++|.+.-. +
T Consensus 245 kwSPdgd~lfaAt-~davfrlw~e~q~wt~e----rw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~ 318 (445)
T KOG2139|consen 245 KWSPDGDVLFAAT-CDAVFRLWQENQSWTKE----RWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFL 318 (445)
T ss_pred EEcCCCCEEEEec-ccceeeeehhcccceec----ceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCcccc
Confidence 9999999999999 89999999655432221 11223448999999999988665443 23344443210 0
Q ss_pred ---------eecccc-----c----ccCCeeEEEEcCCCcEEEEeeCC
Q 014125 346 ---------WISGFQ-----A----AADTVNGFSFHPFLPMAASSSGH 375 (430)
Q Consensus 346 ---------~~~~~~-----~----~~~~v~~~~~~~~~~~l~s~~~d 375 (430)
++..++ . -.+.+.+++|.|.|.+||+.-..
T Consensus 319 ~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg 366 (445)
T KOG2139|consen 319 RPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKG 366 (445)
T ss_pred CcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcC
Confidence 011111 1 14578899999999999987543
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.3e-15 Score=118.96 Aligned_cols=233 Identities=15% Similarity=0.194 Sum_probs=158.1
Q ss_pred eeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE-cC-----
Q 014125 121 SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YN----- 193 (430)
Q Consensus 121 ~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d----- 193 (430)
....++| +.|...+++|..+| .++|+++.-+.....+.... . ..+..+-| ..++++ +| .+
T Consensus 7 ~~lsvs~-------NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~--G-~~~veMLf--R~N~laLVGGg~~pky~ 73 (346)
T KOG2111|consen 7 KTLSVSF-------NQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDG--G-FKIVEMLF--RSNYLALVGGGSRPKYP 73 (346)
T ss_pred ceeEEEE-------ccCCceEEEEecCc-eEEEecCchhhhhhhccccC--c-hhhhhHhh--hhceEEEecCCCCCCCC
Confidence 3444778 77888899999888 99999876332222221111 0 12223333 223444 33 22
Q ss_pred -CeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcC-CceeeEEeeccc--cCeE
Q 014125 194 -KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED-NMELLYVLHGQE--GGVT 269 (430)
Q Consensus 194 -~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~-~~~~~~~~~~~~--~~i~ 269 (430)
+.|.|||=.. .. ...++ .-..+|.++.+.++ .+++.- .+.|++|... +.+.++.+.... ..+.
T Consensus 74 pNkviIWDD~k-~~---~i~el-----~f~~~I~~V~l~r~---riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC 140 (346)
T KOG2111|consen 74 PNKVIIWDDLK-ER---CIIEL-----SFNSEIKAVKLRRD---RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLC 140 (346)
T ss_pred CceEEEEeccc-Cc---EEEEE-----EeccceeeEEEcCC---eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceE
Confidence 5799999322 11 11111 22456999999873 444443 6889999987 445555555332 3344
Q ss_pred EEEEccCCCEEEEEecCCCeEEEEeCCCCceE-EEEeecccCCccceEEEEEcCCCCEEEEEccCCc-EEEEEcCCCCee
Q 014125 270 HVQFSRDGNYLYTGGRKDPYILCWDLRKAVQV-VYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGL-VHIYDLQTGKWI 347 (430)
Q Consensus 270 ~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~vwd~~~~~~~ 347 (430)
+++-..+...|+.-|..-|.|.|-|+...... ... ...|.+.|.+++++-+|..+|++|..|+ |||||..+|+.+
T Consensus 141 ~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~---I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l 217 (346)
T KOG2111|consen 141 SLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSI---INAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLL 217 (346)
T ss_pred eecCCCCceEEEcCCCccceEEEEEhhhcCcCCceE---EEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEe
Confidence 44433345566666657799999999876441 112 2689999999999999999999999998 999999999999
Q ss_pred cccccccC--CeeEEEEcCCCcEEEEeeCCceeeecC
Q 014125 348 SGFQAAAD--TVNGFSFHPFLPMAASSSGHRRFPVDD 382 (430)
Q Consensus 348 ~~~~~~~~--~v~~~~~~~~~~~l~s~~~d~~~~vw~ 382 (430)
++++.... .|.+++|+|+..+||.+|..|+++|+.
T Consensus 218 ~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~ 254 (346)
T KOG2111|consen 218 QELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFS 254 (346)
T ss_pred eeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEE
Confidence 99875433 699999999999999999999999883
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.6e-13 Score=116.81 Aligned_cols=249 Identities=18% Similarity=0.233 Sum_probs=160.4
Q ss_pred cCCCCceEEEEeC----CCcEEEEeccCC--ceeeeeecccccccccceEEEEECCCCcEEEEE--cCCeEEEEEcCCCC
Q 014125 134 SDPTSCVFASTTR----DHPIHLWDATTG--LLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG--YNKSVRVFDVHRPG 205 (430)
Q Consensus 134 ~~~~~~~l~~~~~----dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~d~~i~v~d~~~~~ 205 (430)
++|++++|++... +|.|..|++... +....-.... .......++++|++++|+++ .+|.|.++++...+
T Consensus 44 ~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~---~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g 120 (345)
T PF10282_consen 44 VSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPS---GGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDG 120 (345)
T ss_dssp E-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEE---SSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTS
T ss_pred EEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeecc---CCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCc
Confidence 3788999998877 468999988764 3222111110 11155689999999999965 68999999998754
Q ss_pred Cccccccccc------CCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCce--ee--EEee-ccccCeEEEEEc
Q 014125 206 RDFEKYSTLK------GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME--LL--YVLH-GQEGGVTHVQFS 274 (430)
Q Consensus 206 ~~~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~--~~--~~~~-~~~~~i~~~~~~ 274 (430)
.......... ...........++.++|++..++++.-....|.+|++.... .. ..+. ........++|+
T Consensus 121 ~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~ 200 (345)
T PF10282_consen 121 SLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFS 200 (345)
T ss_dssp EEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-
T ss_pred ccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEc
Confidence 3322211110 00112234578999999666566666667789999987654 21 2222 234567899999
Q ss_pred cCCCEEEEEecCCCeEEEEeCCCCceEEEEee---cc---cCCccceEEEEEcCCCCEEEEEcc-CCcEEEEEcC--CCC
Q 014125 275 RDGNYLYTGGRKDPYILCWDLRKAVQVVYKLY---RS---SEHTNQRILFDIEPSGRHLGTGGQ-DGLVHIYDLQ--TGK 345 (430)
Q Consensus 275 ~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~---~~---~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~--~~~ 345 (430)
|+++++++....++.|.++++........... .. .........+.++|+|++|+++.. .+.|.+|+++ +++
T Consensus 201 pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~ 280 (345)
T PF10282_consen 201 PDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGT 280 (345)
T ss_dssp TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTT
T ss_pred CCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCc
Confidence 99999999987899999999982221111111 11 111235788999999999887664 5679999994 344
Q ss_pred e--ecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCCCccccccCCCcEEEEeec
Q 014125 346 W--ISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFEDLHLSGDENCVSVWSFL 401 (430)
Q Consensus 346 ~--~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~ 401 (430)
+ +..+.......+.++++|+|++|+++.. .++.|.+|++.
T Consensus 281 l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~----------------~s~~v~vf~~d 322 (345)
T PF10282_consen 281 LTLVQTVPTGGKFPRHFAFSPDGRYLYVANQ----------------DSNTVSVFDID 322 (345)
T ss_dssp EEEEEEEEESSSSEEEEEE-TTSSEEEEEET----------------TTTEEEEEEEE
T ss_pred eEEEEEEeCCCCCccEEEEeCCCCEEEEEec----------------CCCeEEEEEEe
Confidence 3 3333433445899999999999998875 46778888775
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.4e-14 Score=132.15 Aligned_cols=218 Identities=15% Similarity=0.164 Sum_probs=141.2
Q ss_pred cCCCeeeeeeeccccCccCCCCceEEEEeCC---CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-E-E
Q 014125 117 TEGESVYDFCWFPHMSASDPTSCVFASTTRD---HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-A-G 191 (430)
Q Consensus 117 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~-~ 191 (430)
.+...+...+| +|||+.|+..+.+ ..|.+||+.+++...... ... ...+..|+|+|+.|+ + +
T Consensus 201 ~~~~~v~~p~w-------SpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~-~~g-----~~~~~~~SpDG~~l~~~~s 267 (433)
T PRK04922 201 RSAEPILSPAW-------SPDGKKLAYVSFERGRSAIYVQDLATGQRELVAS-FRG-----INGAPSFSPDGRRLALTLS 267 (433)
T ss_pred cCCCccccccC-------CCCCCEEEEEecCCCCcEEEEEECCCCCEEEecc-CCC-----CccCceECCCCCEEEEEEe
Confidence 34457888888 7899998887643 469999998876543322 111 334789999999876 3 3
Q ss_pred cCC--eEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCe--EEEEEcCCceeeEEeeccccC
Q 014125 192 YNK--SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQT--SAIYREDNMELLYVLHGQEGG 267 (430)
Q Consensus 192 ~d~--~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--v~~~d~~~~~~~~~~~~~~~~ 267 (430)
.++ .|++||+..+.. ..+ ..+.......+|+|++..++++...+|. |+++|+.+++... +..+...
T Consensus 268 ~~g~~~Iy~~d~~~g~~-----~~l----t~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~ 337 (433)
T PRK04922 268 RDGNPEIYVMDLGSRQL-----TRL----TNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNY 337 (433)
T ss_pred CCCCceEEEEECCCCCe-----EEC----ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCC
Confidence 444 689999876321 111 2223345678999965545555545555 6667776665432 2223344
Q ss_pred eEEEEEccCCCEEEEEecCCC--eEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccC---CcEEEEEcC
Q 014125 268 VTHVQFSRDGNYLYTGGRKDP--YILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQD---GLVHIYDLQ 342 (430)
Q Consensus 268 i~~~~~~~~~~~l~~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~vwd~~ 342 (430)
...++|+|+|++|+..+..++ .|.+||+.++... .+. +........|+|+|++|+..+.+ +.|+++++.
T Consensus 338 ~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~--~Lt----~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~ 411 (433)
T PRK04922 338 NARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR--TLT----PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD 411 (433)
T ss_pred ccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE--ECC----CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 557899999999988762333 6999999876432 221 11223457899999988776653 358888885
Q ss_pred CCCeecccccccCCeeEEEEcC
Q 014125 343 TGKWISGFQAAADTVNGFSFHP 364 (430)
Q Consensus 343 ~~~~~~~~~~~~~~v~~~~~~~ 364 (430)
+.....+..+.+.+...+|+|
T Consensus 412 -g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 412 -GRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred -CCceEEcccCCCCCCCCccCC
Confidence 445566665667788888887
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.8e-13 Score=118.72 Aligned_cols=277 Identities=19% Similarity=0.256 Sum_probs=170.9
Q ss_pred ceeEEEECcCCceEEEecC----CCeEEEEeCCCC-CCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCC
Q 014125 62 FLKGIKWSPDGSSFLTSSE----DKTLRIFSLPEN-GISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP 136 (430)
Q Consensus 62 ~v~~~~~sp~~~~l~s~~~----dg~v~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 136 (430)
....++++|++++|.++.. +|.|..|++... ..+. ........+.....++. +|
T Consensus 38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~--------------~~~~~~~~g~~p~~i~~-------~~ 96 (345)
T PF10282_consen 38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLT--------------LLNSVPSGGSSPCHIAV-------DP 96 (345)
T ss_dssp SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEE--------------EEEEEEESSSCEEEEEE-------CT
T ss_pred CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeE--------------EeeeeccCCCCcEEEEE-------ec
Confidence 3566889999999988866 578988887653 1100 00011112233334555 78
Q ss_pred CCceEEEEeC-CCcEEEEeccC-Cceeeeeecc-------c-ccccccceEEEEECCCCcEEEEE--cCCeEEEEEcCCC
Q 014125 137 TSCVFASTTR-DHPIHLWDATT-GLLRCTYRAY-------D-AVDEITAAFSVAFNPTGTKIFAG--YNKSVRVFDVHRP 204 (430)
Q Consensus 137 ~~~~l~~~~~-dg~i~vwd~~~-~~~~~~~~~~-------~-~~~~~~~v~~~~~~~~~~~l~~~--~d~~i~v~d~~~~ 204 (430)
++++|+++.. +|.|.++++.. +......... . .......+.++.++|+++++++. ....|.+|+++..
T Consensus 97 ~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~ 176 (345)
T PF10282_consen 97 DGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDD 176 (345)
T ss_dssp TSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TT
T ss_pred CCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCC
Confidence 8999888874 88999999987 4333321111 0 01122356789999999988854 5678999999875
Q ss_pred CCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcC--Cce--eeEEeecc------ccCeEEEEEc
Q 014125 205 GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED--NME--LLYVLHGQ------EGGVTHVQFS 274 (430)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~--~~~--~~~~~~~~------~~~i~~~~~~ 274 (430)
...+.....+ ........+.+.|+|++..++++...+++|.+|++. ++. .+..+... ......|+++
T Consensus 177 ~~~l~~~~~~---~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~is 253 (345)
T PF10282_consen 177 TGKLTPVDSI---KVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAIS 253 (345)
T ss_dssp S-TEEEEEEE---ECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-
T ss_pred CceEEEeecc---ccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEe
Confidence 4333221111 123345588999999777777778889999999988 442 22222211 1257889999
Q ss_pred cCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEcc-CCcEEEEEc--CCCCeecccc
Q 014125 275 RDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQ-DGLVHIYDL--QTGKWISGFQ 351 (430)
Q Consensus 275 ~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~--~~~~~~~~~~ 351 (430)
|+|++|+++.+..+.|.+|++......+...............++++|+|++|+++.. ++.|.+|++ .+|.+...-.
T Consensus 254 pdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~ 333 (345)
T PF10282_consen 254 PDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGS 333 (345)
T ss_dssp TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEE
T ss_pred cCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecc
Confidence 9999999999888999999994321111222222223445789999999999988874 568999976 4665543332
Q ss_pred -cccCCeeEEEE
Q 014125 352 -AAADTVNGFSF 362 (430)
Q Consensus 352 -~~~~~v~~~~~ 362 (430)
..-....||.|
T Consensus 334 ~~~~~~p~ci~f 345 (345)
T PF10282_consen 334 SVPIPSPVCIVF 345 (345)
T ss_dssp EEESSSEEEEEE
T ss_pred cccCCCCEEEeC
Confidence 22234555554
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.2e-15 Score=119.53 Aligned_cols=187 Identities=17% Similarity=0.276 Sum_probs=135.3
Q ss_pred cCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE--cCCeEEEEEcCCCCCccccc
Q 014125 134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG--YNKSVRVFDVHRPGRDFEKY 211 (430)
Q Consensus 134 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~d~~i~v~d~~~~~~~~~~~ 211 (430)
|||+|+++|+++.- .+.|-|..+-+..+.+.... .|.-+.|..|..+++++ .++.|.+|++..++
T Consensus 16 fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cld------ki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe------ 82 (447)
T KOG4497|consen 16 FSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLD------KIVYIEWKADSCHILCVAYKDPKVQVWSLVQPE------ 82 (447)
T ss_pred ECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHH------HhhheeeeccceeeeeeeeccceEEEEEeecce------
Confidence 48999999999877 68888887766555544432 67788999999888855 78899999998742
Q ss_pred ccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCC---
Q 014125 212 STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDP--- 288 (430)
Q Consensus 212 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~--- 288 (430)
...........+.++.|+|++..+|.+...+-.|.+|.+.+.+.... +.....+..++|+|+|++.+..++.|.
T Consensus 83 --w~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~f~ai~sRrDCkdy 159 (447)
T KOG4497|consen 83 --WYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQFCAILSRRDCKDY 159 (447)
T ss_pred --eEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCCceeeeeecccHHHH
Confidence 22223455667999999998888999999999999999987765433 323445688999999998887764432
Q ss_pred --------------------------------eEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcE
Q 014125 289 --------------------------------YILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLV 336 (430)
Q Consensus 289 --------------------------------~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 336 (430)
.+.+||---.-.. .. -.-.-.+..++|+|.+++|+.|+.|+.+
T Consensus 160 v~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv-~a----Ye~~lG~k~v~wsP~~qflavGsyD~~l 234 (447)
T KOG4497|consen 160 VQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKV-YA----YERGLGLKFVEWSPCNQFLAVGSYDQML 234 (447)
T ss_pred HHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhhee-ee----eeeccceeEEEeccccceEEeeccchhh
Confidence 2333332111000 00 1123567889999999999999999999
Q ss_pred EEEEc
Q 014125 337 HIYDL 341 (430)
Q Consensus 337 ~vwd~ 341 (430)
+|.+-
T Consensus 235 rvlnh 239 (447)
T KOG4497|consen 235 RVLNH 239 (447)
T ss_pred hhhce
Confidence 98764
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.4e-14 Score=117.74 Aligned_cols=251 Identities=16% Similarity=0.294 Sum_probs=173.6
Q ss_pred ecceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecc
Q 014125 50 YNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFP 129 (430)
Q Consensus 50 ~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 129 (430)
+..++.+.||.+.|++...-|...-+++.+.|.+++||--.+.. .+-+........+++++.+
T Consensus 14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~---------------q~wpsI~~~mP~~~~~~~y-- 76 (404)
T KOG1409|consen 14 PELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSG---------------QYWPSIYHYMPSPCSAMEY-- 76 (404)
T ss_pred hhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEecccc---------------ccCchhhhhCCCCceEeee--
Confidence 35677899999999999999988889999999999999543221 1122222223357788887
Q ss_pred ccCccCCCCceEEEEeCCCcEEEEeccCC----ceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCC
Q 014125 130 HMSASDPTSCVFASTTRDHPIHLWDATTG----LLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRP 204 (430)
Q Consensus 130 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~ 204 (430)
.++...|+.|-..|++.-+.+... ...+.+.. |...+..+-|+...+.++ +|.|..+. |-....
T Consensus 77 -----~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~-----h~~~v~~~if~~~~e~V~s~~~dk~~~-~hc~e~ 145 (404)
T KOG1409|consen 77 -----VSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLA-----HQARVSAIVFSLTHEWVLSTGKDKQFA-WHCTES 145 (404)
T ss_pred -----eccceEEEEEEecceEEEEEhhhhhhhcchhhhhhh-----hhcceeeEEecCCceeEEEeccccceE-EEeecc
Confidence 567889999999999998876542 22333333 344888999988888877 45665553 433222
Q ss_pred CCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEc--CCceeeEEeeccccCeEEEEEccCCCEEEE
Q 014125 205 GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRE--DNMELLYVLHGQEGGVTHVQFSRDGNYLYT 282 (430)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 282 (430)
+..+..+. + ....+++.+.- . ....|...|.|.+..+ ..-.++.++.+|.+.+++++|.|....|++
T Consensus 146 ~~~lg~Y~-~-------~~~~t~~~~d~-~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfS 214 (404)
T KOG1409|consen 146 GNRLGGYN-F-------ETPASALQFDA-L--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFS 214 (404)
T ss_pred CCcccceE-e-------eccCCCCceee-E--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEe
Confidence 21111000 0 00111112211 1 4455666666665543 344678889999999999999999999999
Q ss_pred EecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCC
Q 014125 283 GGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQT 343 (430)
Q Consensus 283 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 343 (430)
+. .|..+.+||+-......... .+|...|..+..-+--+.+++++.||.|.+|+++.
T Consensus 215 g~-~d~~vi~wdigg~~g~~~el---~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 215 GA-SDHSVIMWDIGGRKGTAYEL---QGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred cc-ccCceEEEeccCCcceeeee---ccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 99 99999999998765544443 57888888888877778899999999999999863
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.2e-14 Score=127.20 Aligned_cols=205 Identities=14% Similarity=0.056 Sum_probs=132.9
Q ss_pred cEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE---cCCeEEEEEcCCCCCcccccccccCCCCCCCcc
Q 014125 149 PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG---YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGI 224 (430)
Q Consensus 149 ~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 224 (430)
.|.++|........... ... .+.+.+|+|||+.|+ ++ .+..|.+|++..+.. .. +. .....
T Consensus 180 ~l~~~d~dg~~~~~lt~-~~~-----~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~--~~---l~----~~~~~ 244 (429)
T PRK03629 180 ELRVSDYDGYNQFVVHR-SPQ-----PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV--RQ---VA----SFPRH 244 (429)
T ss_pred eEEEEcCCCCCCEEeec-CCC-----ceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe--EE---cc----CCCCC
Confidence 68888887654433322 222 678999999999888 43 245799999876321 11 11 11122
Q ss_pred eEEEEEcCCCCceEEEecCCC--eEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCe--EEEEeCCCCce
Q 014125 225 MSAIAFSPTHTGMLAIGSYSQ--TSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPY--ILCWDLRKAVQ 300 (430)
Q Consensus 225 v~~~~~~~~~~~~l~~~~~dg--~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~--i~i~d~~~~~~ 300 (430)
.....|+|++..++++.+.+| .|++||+.+++..... .+...+....|+|+|+.|+.++..++. |.++|+.++..
T Consensus 245 ~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt-~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~ 323 (429)
T PRK03629 245 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVT-DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP 323 (429)
T ss_pred cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEcc-CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe
Confidence 446899996665555555555 5889999887665443 344567889999999988877734444 44556665432
Q ss_pred EEEEeecccCCccceEEEEEcCCCCEEEEEccC---CcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCc
Q 014125 301 VVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQD---GLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHR 376 (430)
Q Consensus 301 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~ 376 (430)
. .+. ..........|+|+|++|+..+.+ ..|++||+.+++.. .+.. ........|+|||++|+.++.++
T Consensus 324 ~--~lt---~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~-~~~~~~p~~SpDG~~i~~~s~~~ 395 (429)
T PRK03629 324 Q--RIT---WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTD-TFLDETPSIAPNGTMVIYSSSQG 395 (429)
T ss_pred E--Eee---cCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCC-CCCCCCceECCCCCEEEEEEcCC
Confidence 2 221 122334568899999998876543 35889999888643 2321 12345678999999999988653
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.7e-16 Score=141.63 Aligned_cols=232 Identities=22% Similarity=0.312 Sum_probs=174.3
Q ss_pred eecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcC
Q 014125 115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYN 193 (430)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d 193 (430)
..+|...|+|..| ...|.++++|+.|..++||..+++.+.....+|.. .|+.++.+.++.+++ ++.|
T Consensus 186 LlgH~naVyca~f-------Drtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~-----ditdlavs~~n~~iaaaS~D 253 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIF-------DRTGRYIITGSDDRLVKIWSMETARCLASCRGHSG-----DITDLAVSSNNTMIAAASND 253 (1113)
T ss_pred HHhhhhheeeeee-------ccccceEeecCccceeeeeeccchhhhccCCCCcc-----ccchhccchhhhhhhhcccC
Confidence 3467788999999 77899999999999999999999999999998876 899999998888888 4589
Q ss_pred CeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEE---ee-ccccCeE
Q 014125 194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYV---LH-GQEGGVT 269 (430)
Q Consensus 194 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~---~~-~~~~~i~ 269 (430)
..|++|.+..+ .+...+.+|++.|++++|+|. .+.+.||++++||.+-.-.... +. ....-+.
T Consensus 254 ~vIrvWrl~~~--------~pvsvLrghtgavtaiafsP~-----~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~ 320 (1113)
T KOG0644|consen 254 KVIRVWRLPDG--------APVSVLRGHTGAVTAIAFSPR-----ASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVD 320 (1113)
T ss_pred ceEEEEecCCC--------chHHHHhccccceeeeccCcc-----ccCCCCCceEeccccccccccCCCCCCccccccee
Confidence 99999999873 333445899999999999993 3778899999999881111111 11 1224567
Q ss_pred EEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCC-CCEEEEEccCCcEEEEEcCCCCeec
Q 014125 270 HVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPS-GRHLGTGGQDGLVHIYDLQTGKWIS 348 (430)
Q Consensus 270 ~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~ 348 (430)
++.|...+..+++++ .|+.-..|.+.... .+...+.-+.++.+ ..+.+++-.+-.+++|++.+|.++.
T Consensus 321 s~~~~~~~~~f~Tgs-~d~ea~n~e~~~l~----------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H 389 (1113)
T KOG0644|consen 321 SILFENNGDRFLTGS-RDGEARNHEFEQLA----------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLH 389 (1113)
T ss_pred eeecccccccccccc-CCcccccchhhHhh----------hhccceEEEeccccccccceeeeeeeEeeeeecccchhhh
Confidence 788888888899998 89988888765321 12222222222222 2466777778889999999999999
Q ss_pred ccccccCCeeEEEEcCCCcEEE-EeeCCceeeecC
Q 014125 349 GFQAAADTVNGFSFHPFLPMAA-SSSGHRRFPVDD 382 (430)
Q Consensus 349 ~~~~~~~~v~~~~~~~~~~~l~-s~~~d~~~~vw~ 382 (430)
.+.+|...+..+.+||-...++ +++.||...|||
T Consensus 390 ~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwd 424 (1113)
T KOG0644|consen 390 NLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWD 424 (1113)
T ss_pred hhcccccceeeeeecCCCcHhhhhccCCCceEeee
Confidence 9999999999999999776544 344444444443
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.3e-13 Score=125.95 Aligned_cols=219 Identities=14% Similarity=0.099 Sum_probs=141.0
Q ss_pred ecCCCeeeeeeeccccCccCCCCceEEEEeC---CCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE
Q 014125 116 VTEGESVYDFCWFPHMSASDPTSCVFASTTR---DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG 191 (430)
Q Consensus 116 ~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~ 191 (430)
..+...+...+| +|||+.|+..+. +..|.+||+.+++.... ..... .+....|+|||+.|+ +.
T Consensus 198 t~~~~~v~~p~w-------SpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l-~~~~g-----~~~~~~~SPDG~~la~~~ 264 (435)
T PRK05137 198 TDGSSLVLTPRF-------SPNRQEITYMSYANGRPRVYLLDLETGQRELV-GNFPG-----MTFAPRFSPDGRKVVMSL 264 (435)
T ss_pred ecCCCCeEeeEE-------CCCCCEEEEEEecCCCCEEEEEECCCCcEEEe-ecCCC-----cccCcEECCCCCEEEEEE
Confidence 345568889999 779998887764 46899999988865432 22221 556789999999876 33
Q ss_pred -cCC--eEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCC--eEEEEEcCCceeeEEeecccc
Q 014125 192 -YNK--SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ--TSAIYREDNMELLYVLHGQEG 266 (430)
Q Consensus 192 -~d~--~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~v~~~d~~~~~~~~~~~~~~~ 266 (430)
.++ .|.+||+..+.. ..+ ..+........|+|++..++++...+| .|+++|+.+++.. .+..+.+
T Consensus 265 ~~~g~~~Iy~~d~~~~~~-----~~L----t~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~ 334 (435)
T PRK05137 265 SQGGNTDIYTMDLRSGTT-----TRL----TDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGGG 334 (435)
T ss_pred ecCCCceEEEEECCCCce-----EEc----cCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCCC
Confidence 444 477778765321 111 223344667899996554544443444 6888888766543 3333445
Q ss_pred CeEEEEEccCCCEEEEEecCC--CeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccC------CcEEE
Q 014125 267 GVTHVQFSRDGNYLYTGGRKD--PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQD------GLVHI 338 (430)
Q Consensus 267 ~i~~~~~~~~~~~l~~~~~~d--~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~v 338 (430)
.+....|+|+|+.|+...... ..|.+||+...... .+. ....+....|+|||+.|+..+.+ ..+++
T Consensus 335 ~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~--~lt----~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~ 408 (435)
T PRK05137 335 RYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGER--ILT----SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYT 408 (435)
T ss_pred cccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceE--ecc----CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEE
Confidence 677789999999998876222 36888887654322 221 11235678999999988765542 25888
Q ss_pred EEcCCCCeecccccccCCeeEEEEcCC
Q 014125 339 YDLQTGKWISGFQAAADTVNGFSFHPF 365 (430)
Q Consensus 339 wd~~~~~~~~~~~~~~~~v~~~~~~~~ 365 (430)
+|+..+.. ..+. ..+.+...+|+|-
T Consensus 409 ~dl~g~~~-~~l~-~~~~~~~p~Wsp~ 433 (435)
T PRK05137 409 VDLTGRNE-REVP-TPGDASDPAWSPL 433 (435)
T ss_pred EECCCCce-EEcc-CCCCccCcccCCC
Confidence 88876554 3444 2445677788873
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.3e-14 Score=114.43 Aligned_cols=157 Identities=19% Similarity=0.350 Sum_probs=109.4
Q ss_pred EEEECCCCcEEEE--Ec---------CCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEE-ecCCC
Q 014125 178 SVAFNPTGTKIFA--GY---------NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAI-GSYSQ 245 (430)
Q Consensus 178 ~~~~~~~~~~l~~--~~---------d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~-~~~dg 245 (430)
.+.|+|+|.+|++ .. -+...+|.++..+.+.... .....++|.+++|+|++..++++ |..++
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i------~l~~~~~I~~~~WsP~g~~favi~g~~~~ 83 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESI------ELKKEGPIHDVAWSPNGNEFAVIYGSMPA 83 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCcccee------eccCCCceEEEEECcCCCEEEEEEccCCc
Confidence 6889999988873 21 1456677665433322111 11233569999999966554433 45678
Q ss_pred eEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEec--CCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCC
Q 014125 246 TSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGR--KDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPS 323 (430)
Q Consensus 246 ~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 323 (430)
.|.+||++ ++.+..+. ...++.+.|+|+|++|++++. ..|.|.+||.++..... . .....++.++|+|+
T Consensus 84 ~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~-~-----~~~~~~t~~~WsPd 154 (194)
T PF08662_consen 84 KVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKIS-T-----FEHSDATDVEWSPD 154 (194)
T ss_pred ccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEee-c-----cccCcEEEEEEcCC
Confidence 99999997 66666664 467889999999999999872 24679999999664332 2 12234789999999
Q ss_pred CCEEEEEcc------CCcEEEEEcCCCCeeccc
Q 014125 324 GRHLGTGGQ------DGLVHIYDLQTGKWISGF 350 (430)
Q Consensus 324 ~~~l~~~~~------dg~i~vwd~~~~~~~~~~ 350 (430)
|++|++++. |+.++||+.. |+.+...
T Consensus 155 Gr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 155 GRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred CCEEEEEEeccceeccccEEEEEec-CeEeEec
Confidence 999998874 6789999986 6655443
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.5e-13 Score=120.83 Aligned_cols=252 Identities=17% Similarity=0.203 Sum_probs=155.8
Q ss_pred eEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEE
Q 014125 64 KGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFAS 143 (430)
Q Consensus 64 ~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 143 (430)
..+.|+|||+++++++.||.|.++|+.+.+....+ ..+.....+++ ++||+++++
T Consensus 40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i------------------~~G~~~~~i~~-------s~DG~~~~v 94 (369)
T PF02239_consen 40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATI------------------KVGGNPRGIAV-------SPDGKYVYV 94 (369)
T ss_dssp EEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEE------------------E-SSEEEEEEE---------TTTEEEE
T ss_pred eEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEE------------------ecCCCcceEEE-------cCCCCEEEE
Confidence 45789999999999999999999999987543322 23345666777 889999887
Q ss_pred Ee-CCCcEEEEeccCCceeeeeecccccc--cccceEEEEECCCCcEEE-EEc-CCeEEEEEcCCCCCcccccccccCCC
Q 014125 144 TT-RDHPIHLWDATTGLLRCTYRAYDAVD--EITAAFSVAFNPTGTKIF-AGY-NKSVRVFDVHRPGRDFEKYSTLKGNK 218 (430)
Q Consensus 144 ~~-~dg~i~vwd~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~-~~~-d~~i~v~d~~~~~~~~~~~~~~~~~~ 218 (430)
+. ..+.+.++|.++.+.+..+....... ....+.++..+|....++ +-. .+.|.+.|......... ..+
T Consensus 95 ~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~--~~i---- 168 (369)
T PF02239_consen 95 ANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKV--TTI---- 168 (369)
T ss_dssp EEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEE--EEE----
T ss_pred EecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccce--eee----
Confidence 75 58899999999999888876543211 223567888888888555 444 48888888765422111 111
Q ss_pred CCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEee------------------------------------
Q 014125 219 EGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH------------------------------------ 262 (430)
Q Consensus 219 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~------------------------------------ 262 (430)
..........|+|++..+++....+..|-++|..+++.+..+.
T Consensus 169 -~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig 247 (369)
T PF02239_consen 169 -KVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIG 247 (369)
T ss_dssp -E--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE
T ss_pred -cccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceeccccc
Confidence 1123466789999555555656667788888877665443221
Q ss_pred -------------------ccccCeEEEEEccCCCEEEEE---ecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEE
Q 014125 263 -------------------GQEGGVTHVQFSRDGNYLYTG---GRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDI 320 (430)
Q Consensus 263 -------------------~~~~~i~~~~~~~~~~~l~~~---~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~ 320 (430)
...++ ..+..+|+++++++. +...+.|.++|.++.+ ....+. ......+..+.|
T Consensus 248 ~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~-~~~~i~--~~~~~~~~h~ef 323 (369)
T PF02239_consen 248 TDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLK-VVKTIT--PGPGKRVVHMEF 323 (369)
T ss_dssp --TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTE-EEE-HH--HHHT--EEEEEE
T ss_pred CCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcc-eeEEEe--ccCCCcEeccEE
Confidence 11112 457779999999998 4356899999999873 322321 112234889999
Q ss_pred cCCCCEEEEEccC--CcEEEEEcCCCCeecccc
Q 014125 321 EPSGRHLGTGGQD--GLVHIYDLQTGKWISGFQ 351 (430)
Q Consensus 321 ~~~~~~l~~~~~d--g~i~vwd~~~~~~~~~~~ 351 (430)
+++|+.+..+..+ +.|.|||..+.+.+..+.
T Consensus 324 ~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 324 NPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp -TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred CCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 9999987666554 369999999999988776
|
... |
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.6e-14 Score=120.90 Aligned_cols=293 Identities=12% Similarity=0.164 Sum_probs=180.2
Q ss_pred eeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEE
Q 014125 63 LKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFA 142 (430)
Q Consensus 63 v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 142 (430)
=+-+.|||.|.||+|--.-| |.+|-=. .......+.|. .|.-+.| ||..++|+
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~------------------~f~r~~RF~Hp-~Vq~idf-------SP~EkYLV 265 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGE------------------SFDRIQRFYHP-GVQFIDF-------SPNEKYLV 265 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCc------------------cHHHHHhccCC-Cceeeec-------CCccceEE
Confidence 35689999999999988776 7899322 33333444444 4666666 77888999
Q ss_pred EEeC-----------CCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCccccc
Q 014125 143 STTR-----------DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKY 211 (430)
Q Consensus 143 ~~~~-----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~ 211 (430)
+-+. ...++|||+.+|...+.+........ .-.-+.||.|++++|.-....|.||+...-.
T Consensus 266 T~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~--~WP~frWS~DdKy~Arm~~~sisIyEtpsf~------ 337 (698)
T KOG2314|consen 266 TYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYL--KWPIFRWSHDDKYFARMTGNSISIYETPSFM------ 337 (698)
T ss_pred EecCCccccCcccCCCceEEEEEccccchhcceeccCCCcc--ccceEEeccCCceeEEeccceEEEEecCcee------
Confidence 8653 24699999999998888877533211 2234689999999996656889999875410
Q ss_pred ccccCCCCCCCcceEEEEEcCCCCceEEEecCC-----CeEE--------------EEE---------------------
Q 014125 212 STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS-----QTSA--------------IYR--------------------- 251 (430)
Q Consensus 212 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~v~--------------~~d--------------------- 251 (430)
+.....-....|....|+| .+++||--... ..+. +++
T Consensus 338 --lld~Kslki~gIr~FswsP-~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR 414 (698)
T KOG2314|consen 338 --LLDKKSLKISGIRDFSWSP-TSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDR 414 (698)
T ss_pred --eecccccCCccccCcccCC-CcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEe
Confidence 1000111123466666666 44455432211 0111 111
Q ss_pred -----------------cCCceeeEEeeccccCeEEEEEccCCCEEEEEecC--CCeEEEEeCCCCceEEEEeecccCCc
Q 014125 252 -----------------EDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRK--DPYILCWDLRKAVQVVYKLYRSSEHT 312 (430)
Q Consensus 252 -----------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~ 312 (430)
++........-.....|...+|-|.|..+++.+.. ..++.+|.+++......... .-..
T Consensus 415 ~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk--~~dk 492 (698)
T KOG2314|consen 415 HTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVK--ELDK 492 (698)
T ss_pred eccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhh--hhcc
Confidence 11111000000123467788999999987766533 35788888874322111111 1122
Q ss_pred cceEEEEEcCCCCEEEEEc---cCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCCCccccc
Q 014125 313 NQRILFDIEPSGRHLGTGG---QDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFEDLHLS 389 (430)
Q Consensus 313 ~~v~~~~~~~~~~~l~~~~---~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~l~~~ 389 (430)
...+.+.|+|.|++++.+. ..|.+.++|+.-......-.......+.+.|.|.|+|++|++...+.+
T Consensus 493 ~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk---------- 562 (698)
T KOG2314|consen 493 KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHK---------- 562 (698)
T ss_pred cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehhhhc----------
Confidence 4567799999999988764 468899999885332222222223568899999999999998655443
Q ss_pred cCCCcEEEEeecccccc
Q 014125 390 GDENCVSVWSFLYASMM 406 (430)
Q Consensus 390 ~~d~~i~~w~~~~~~~~ 406 (430)
.|..-++|++...-+.
T Consensus 563 -~d~GYri~tfqGrll~ 578 (698)
T KOG2314|consen 563 -VDNGYRIFTFQGRLLK 578 (698)
T ss_pred -cccceEEEEeecHHHH
Confidence 4788999998865443
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.9e-14 Score=131.92 Aligned_cols=280 Identities=13% Similarity=0.145 Sum_probs=185.7
Q ss_pred CceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCce
Q 014125 61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV 140 (430)
Q Consensus 61 ~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (430)
+++++.++-. +||+.|.. -.|.+||+..+.....+........+ ..+ +.+. -.+.+
T Consensus 8 ~~l~~~~~~~--~~llag~g-p~i~~yd~~s~~li~~~~~~~~~~~H--------~~e-~~~~------------l~~~~ 63 (967)
T KOG0974|consen 8 GPLNLPQLVS--DYLLAGSG-PEILVYDLSSGCLIRHLIQSKILEVH--------RGE-GKVK------------LLSGK 63 (967)
T ss_pred ccccchhhcc--ceeeecCC-CceEEeeCCchhHhhhhhhhcccccc--------ccc-ccce------------eccce
Confidence 3445555443 57765554 47999999988665544433321111 000 0111 12335
Q ss_pred EEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCcccccccccCCCC
Q 014125 141 FASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKE 219 (430)
Q Consensus 141 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~ 219 (430)
++++..-+.+..=+....... .+.. .+....+..+...++ ...++.+.+||........+ ......
T Consensus 64 ~v~~~~~~~v~~~~~~~~~~~-~~s~--------wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~----i~~~er 130 (967)
T KOG0974|consen 64 IVTCAKSDEVYVKEASNQIIE-RFSD--------WIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSK----IQSDER 130 (967)
T ss_pred EEEEEeecceeecchhhhhhh-hccc--------cccccchhhhcceEEEEEcCceEEEEecccCceehh----cCCCce
Confidence 666665554544333221111 1110 233334444556666 66889999999865321111 110000
Q ss_pred CCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCc
Q 014125 220 GQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAV 299 (430)
Q Consensus 220 ~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~ 299 (430)
..-....-+.+++ ..-++++|+.-+.|.+|+....+....+.+|++.|.++.|+.+|.++++.+ +|.++|+|++.+.+
T Consensus 131 ~~l~~~~~~g~s~-~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~S-dDRsiRlW~i~s~~ 208 (967)
T KOG0974|consen 131 CTLYSSLIIGDSA-EELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVS-DDRSIRLWPIDSRE 208 (967)
T ss_pred EEEEeEEEEeccC-cEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEe-cCcceeeeeccccc
Confidence 1111122233445 666889999999999999875444446889999999999999999999999 99999999999876
Q ss_pred eEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccC-CeeEEEEcCCCcEEEEeeCCcee
Q 014125 300 QVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAAD-TVNGFSFHPFLPMAASSSGHRRF 378 (430)
Q Consensus 300 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~s~~~d~~~ 378 (430)
... ....+|+..++.+.|.|+ .++++++|-+.++|+.+ ++.+..+.+|.. .+..++..++...++|++.|+.+
T Consensus 209 ~~~---~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~l 282 (967)
T KOG0974|consen 209 VLG---CTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTL 282 (967)
T ss_pred ccC---cccccccceeEEEEeccc--eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcch
Confidence 543 223589999999999998 99999999999999766 555668888876 69999999999999999999999
Q ss_pred eecCCCc
Q 014125 379 PVDDFED 385 (430)
Q Consensus 379 ~vw~~~~ 385 (430)
++|+...
T Consensus 283 k~~~l~~ 289 (967)
T KOG0974|consen 283 KLWDLNG 289 (967)
T ss_pred hhhhhhc
Confidence 9997655
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.3e-13 Score=109.87 Aligned_cols=263 Identities=16% Similarity=0.152 Sum_probs=180.3
Q ss_pred CCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCc-eEEEEeCCCcEEEEeccCCc
Q 014125 81 DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC-VFASTTRDHPIHLWDATTGL 159 (430)
Q Consensus 81 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~ 159 (430)
.|.+.+|++.+.+... ...+.......+..+.|.... .+|. .++-+...|.|.++......
T Consensus 45 ~Gkl~Lys~~d~~~~~--------------l~~~q~~dts~~~dm~w~~~~----~~g~~~l~~a~a~G~i~~~r~~~~~ 106 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSP--------------LDTLQCTDTSTEFDMLWRIRE----TDGDFNLLDAHARGQIQLYRNDEDE 106 (339)
T ss_pred ccceEEEeecccccCc--------------cceeeeecccccceeeeeecc----CCccceeeeccccceEEEEeeccce
Confidence 4678888887665432 112223334567888885531 2333 57777889999999887666
Q ss_pred eeeeeeccccccccc-ceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCce
Q 014125 160 LRCTYRAYDAVDEIT-AAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGM 237 (430)
Q Consensus 160 ~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 237 (430)
....+.+.....-.. ...++.|++.+..++++ .+|.+.+-+.... . ....+..++|........|+..+.++
T Consensus 107 ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~--~----le~vq~wk~He~E~Wta~f~~~~pnl 180 (339)
T KOG0280|consen 107 SSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEM--V----LEKVQTWKVHEFEAWTAKFSDKEPNL 180 (339)
T ss_pred eeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEeccee--e----eeecccccccceeeeeeecccCCCce
Confidence 555555544322111 35678899999888877 7788885544321 0 11112457888889999999888899
Q ss_pred EEEecCCCeEEEEEcC-CceeeEE-eeccccCeEEEEEcc-CCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccc
Q 014125 238 LAIGSYSQTSAIYRED-NMELLYV-LHGQEGGVTHVQFSR-DGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQ 314 (430)
Q Consensus 238 l~~~~~dg~v~~~d~~-~~~~~~~-~~~~~~~i~~~~~~~-~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 314 (430)
+.+|+.|+.+..||++ .++.+.. .+.|...|.+|.-+| .+.+|++|+ .|..|++||.|+-.+++.. ....+.
T Consensus 181 vytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGs-YDe~i~~~DtRnm~kPl~~----~~v~GG 255 (339)
T KOG0280|consen 181 VYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGS-YDECIRVLDTRNMGKPLFK----AKVGGG 255 (339)
T ss_pred EEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEec-cccceeeeehhcccCcccc----Cccccc
Confidence 9999999999999999 3344433 556889999999886 466888888 9999999999976655433 234588
Q ss_pred eEEEEEcCCC--CEEEEEccCCcEEEEEcCCCC-----eecccccccCCeeEEEEcCCCcEEEEee
Q 014125 315 RILFDIEPSG--RHLGTGGQDGLVHIYDLQTGK-----WISGFQAAADTVNGFSFHPFLPMAASSS 373 (430)
Q Consensus 315 v~~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 373 (430)
|+.+.++|.- +.|+++-.+| .+|-+...+. .....+.|.+-+..-.|......|+||+
T Consensus 256 VWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCs 320 (339)
T KOG0280|consen 256 VWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCS 320 (339)
T ss_pred eEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeeccccccceeeccccccccceeeeee
Confidence 9999999963 3455444444 6777766442 2345566777777778866666788876
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1e-13 Score=126.47 Aligned_cols=204 Identities=19% Similarity=0.189 Sum_probs=134.3
Q ss_pred CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEc---CCeEEEEEcCCCCCcccccccccCCCCCCCc
Q 014125 148 HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGY---NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAG 223 (430)
Q Consensus 148 g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~---d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 223 (430)
..|.+||...... ..+..+.. .+.+.+|+|+|+.|+ ++. ...|++||+..+... .+ ....+
T Consensus 184 ~~l~i~D~~g~~~-~~lt~~~~-----~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-----~l----~~~~g 248 (433)
T PRK04922 184 YALQVADSDGYNP-QTILRSAE-----PILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-----LV----ASFRG 248 (433)
T ss_pred EEEEEECCCCCCc-eEeecCCC-----ccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-----Ee----ccCCC
Confidence 3588999865443 33333322 678899999999888 442 346999999764221 11 11123
Q ss_pred ceEEEEEcCCCCceEEEecCCC--eEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCe--EEEEeCCCCc
Q 014125 224 IMSAIAFSPTHTGMLAIGSYSQ--TSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPY--ILCWDLRKAV 299 (430)
Q Consensus 224 ~v~~~~~~~~~~~~l~~~~~dg--~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~--i~i~d~~~~~ 299 (430)
...+..|+|++..++++.+.+| .|++||+.+++.. .+..+.......+|+|||+.|+.++..+|. |+++|+.++.
T Consensus 249 ~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~ 327 (433)
T PRK04922 249 INGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS 327 (433)
T ss_pred CccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 3457899997666666666655 5999999887654 444455556788999999998877634554 6666776653
Q ss_pred eEEEEeecccCCccceEEEEEcCCCCEEEEEccCC---cEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeC
Q 014125 300 QVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDG---LVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSG 374 (430)
Q Consensus 300 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 374 (430)
.. .+. .........+|+|+|++|+..+.++ .|.+||+.+++.. .+. +........|+|+|++|+..+.
T Consensus 328 ~~--~lt---~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~ 398 (433)
T PRK04922 328 AE--RLT---FQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATR 398 (433)
T ss_pred eE--Eee---cCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEe
Confidence 22 221 1122344689999999988765433 5999999888765 333 2234567899999998887764
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.7e-14 Score=127.61 Aligned_cols=205 Identities=21% Similarity=0.201 Sum_probs=130.9
Q ss_pred CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEc---CCeEEEEEcCCCCCcccccccccCCCCCCCc
Q 014125 148 HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGY---NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAG 223 (430)
Q Consensus 148 g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~---d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 223 (430)
..|.++|... .....+..... .+.+.+|+|||+.|+ ++. ...|.+||+..+... .+ ....+
T Consensus 176 ~~L~~~D~dG-~~~~~l~~~~~-----~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~-----~l----~~~~g 240 (427)
T PRK02889 176 YQLQISDADG-QNAQSALSSPE-----PIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR-----VV----ANFKG 240 (427)
T ss_pred cEEEEECCCC-CCceEeccCCC-----CcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE-----Ee----ecCCC
Confidence 3577777643 33333333222 677899999999888 442 246999999764221 11 11223
Q ss_pred ceEEEEEcCCCCceEEEecCCCeEEEEE--cCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeC--CCCc
Q 014125 224 IMSAIAFSPTHTGMLAIGSYSQTSAIYR--EDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDL--RKAV 299 (430)
Q Consensus 224 ~v~~~~~~~~~~~~l~~~~~dg~v~~~d--~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~--~~~~ 299 (430)
......|+|++..++++.+.+|...+|. +..+. ...+..+........|+|||+.|+..+..+|...+|.+ .++.
T Consensus 241 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~ 319 (427)
T PRK02889 241 SNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA 319 (427)
T ss_pred CccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc
Confidence 4567899996666666777788766664 44443 44555455556778999999988876634566666655 3332
Q ss_pred eEEEEeecccCCccceEEEEEcCCCCEEEEEccCC---cEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCC
Q 014125 300 QVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDG---LVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGH 375 (430)
Q Consensus 300 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 375 (430)
.. .+.. . .......+|+|+|++|+..+.++ .|++||+.+++...... ........|+|+|+.|+.++.+
T Consensus 320 ~~--~lt~-~--g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~--~~~~~~p~~spdg~~l~~~~~~ 391 (427)
T PRK02889 320 AQ--RVTF-T--GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTD--TTRDESPSFAPNGRYILYATQQ 391 (427)
T ss_pred eE--EEec-C--CCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccC--CCCccCceECCCCCEEEEEEec
Confidence 21 2211 1 12234578999999998776554 59999999887543322 2344678999999998888754
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.2e-14 Score=125.22 Aligned_cols=222 Identities=18% Similarity=0.241 Sum_probs=153.6
Q ss_pred eecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCC--CcEEEEE-
Q 014125 115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT--GTKIFAG- 191 (430)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~- 191 (430)
..+|.+-|.++.| +.+|.+|++|+.|-.+.|||.-..+.+..+.. +|...|.++.|-|. ++++++|
T Consensus 46 L~GH~GCVN~LeW-------n~dG~lL~SGSDD~r~ivWd~~~~KllhsI~T----gHtaNIFsvKFvP~tnnriv~sgA 114 (758)
T KOG1310|consen 46 LTGHTGCVNCLEW-------NADGELLASGSDDTRLIVWDPFEYKLLHSIST----GHTANIFSVKFVPYTNNRIVLSGA 114 (758)
T ss_pred hccccceecceee-------cCCCCEEeecCCcceEEeecchhcceeeeeec----ccccceeEEeeeccCCCeEEEecc
Confidence 4567889999999 78999999999999999999987777666543 34558999999885 3555554
Q ss_pred cCCeEEEEEcCCCCCccc--ccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceee----------E
Q 014125 192 YNKSVRVFDVHRPGRDFE--KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELL----------Y 259 (430)
Q Consensus 192 ~d~~i~v~d~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~----------~ 259 (430)
.|..|+++|+........ ...........|...|..++..|++++.+.++++||+++-||++..... .
T Consensus 115 gDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ 194 (758)
T KOG1310|consen 115 GDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILV 194 (758)
T ss_pred CcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHH
Confidence 899999999985222111 0111222235678889999999988899999999999999999874211 0
Q ss_pred EeeccccCeEEEEEccCCC-EEEEEecCCCeEEEEeCCCCceEE----------------EEeecccCC--------c--
Q 014125 260 VLHGQEGGVTHVQFSRDGN-YLYTGGRKDPYILCWDLRKAVQVV----------------YKLYRSSEH--------T-- 312 (430)
Q Consensus 260 ~~~~~~~~i~~~~~~~~~~-~l~~~~~~d~~i~i~d~~~~~~~~----------------~~~~~~~~~--------~-- 312 (430)
.+...--...++..+|... +|++|+ .|...++||.+...+.. ...+. .+| .
T Consensus 195 ny~~~lielk~ltisp~rp~~laVGg-sdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~-p~hlkn~~gn~~~~ 272 (758)
T KOG1310|consen 195 NYNPQLIELKCLTISPSRPYYLAVGG-SDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFS-PGHLKNSQGNLDRY 272 (758)
T ss_pred HhchhhheeeeeeecCCCCceEEecC-CCchhhhhhhhhhccCCCCCccccCCCCcccchhheec-CccccCcccccccc
Confidence 1111123467899999765 566677 99999999954211100 00000 111 1
Q ss_pred -cceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecc
Q 014125 313 -NQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISG 349 (430)
Q Consensus 313 -~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 349 (430)
..++.+.|+|+|.-|+..-....|+++|+..++....
T Consensus 273 ~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~ 310 (758)
T KOG1310|consen 273 ITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTP 310 (758)
T ss_pred eeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCcee
Confidence 1256688999997666555555799999998765443
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.8e-13 Score=123.75 Aligned_cols=204 Identities=12% Similarity=0.044 Sum_probs=136.5
Q ss_pred CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE---cCCeEEEEEcCCCCCcccccccccCCCCCCCc
Q 014125 148 HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG---YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAG 223 (430)
Q Consensus 148 g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 223 (430)
..|.++|...... ..+..+.. .+.+.+|+|||+.|+ ++ .+..|.+||+..+... .+ ....+
T Consensus 182 ~~l~~~d~dg~~~-~~lt~~~~-----~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-----~l----~~~~g 246 (435)
T PRK05137 182 KRLAIMDQDGANV-RYLTDGSS-----LVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-----LV----GNFPG 246 (435)
T ss_pred eEEEEECCCCCCc-EEEecCCC-----CeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-----Ee----ecCCC
Confidence 3688888855443 33443333 788999999999888 44 2468999999764221 11 22334
Q ss_pred ceEEEEEcCCCCceEEEecCCCe--EEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCC--eEEEEeCCCCc
Q 014125 224 IMSAIAFSPTHTGMLAIGSYSQT--SAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDP--YILCWDLRKAV 299 (430)
Q Consensus 224 ~v~~~~~~~~~~~~l~~~~~dg~--v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~--~i~i~d~~~~~ 299 (430)
.+....|+|++..++++.+.++. |++||+.+++.. .+..+........|+|||+.|+..+..+| .|+++|+..+.
T Consensus 247 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~ 325 (435)
T PRK05137 247 MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN 325 (435)
T ss_pred cccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC
Confidence 56788999976666667666665 777788877654 45545566778999999998887763333 68888887653
Q ss_pred eEEEEeecccCCccceEEEEEcCCCCEEEEEccC---CcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeC
Q 014125 300 QVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQD---GLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSG 374 (430)
Q Consensus 300 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 374 (430)
.. .+. .....+....|+|+|++|+..+.+ ..|.+||+.++.. ..+. ....+..+.|+|+|++|+..+.
T Consensus 326 ~~--~lt---~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~ 396 (435)
T PRK05137 326 PR--RIS---FGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQ 396 (435)
T ss_pred eE--Eee---cCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEc
Confidence 32 221 123345668899999998876543 3588899865543 3332 2235778899999998877664
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=6e-13 Score=118.62 Aligned_cols=318 Identities=14% Similarity=0.157 Sum_probs=213.4
Q ss_pred cCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCC
Q 014125 58 IPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT 137 (430)
Q Consensus 58 ~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 137 (430)
+......|++|+....|+|+||.||.++|-.+.+......... ......-......-+|...|.-+.| +.+
T Consensus 12 PnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~g--laa~snLsmNQtLeGH~~sV~vvTW-------Ne~ 82 (1189)
T KOG2041|consen 12 PNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSG--LAAASNLSMNQTLEGHNASVMVVTW-------NEN 82 (1189)
T ss_pred CCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccc--cccccccchhhhhccCcceEEEEEe-------ccc
Confidence 3445688999999999999999999999998876533222222 1111222233345678889999999 556
Q ss_pred CceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCcccccccccC
Q 014125 138 SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKG 216 (430)
Q Consensus 138 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~ 216 (430)
.+.|-+...+|.|.+|-+-.|.......... ....|.+++|+.+|..|. +-.||.|.+=.++.. + ...+
T Consensus 83 ~QKLTtSDt~GlIiVWmlykgsW~EEMiNnR---nKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGN-R------IwgK 152 (1189)
T KOG2041|consen 83 NQKLTTSDTSGLIIVWMLYKGSWCEEMINNR---NKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGN-R------IWGK 152 (1189)
T ss_pred cccccccCCCceEEEEeeecccHHHHHhhCc---CccEEEEEEEcCCCcEEEEEEccCCEEEEeeccc-e------ecch
Confidence 7789999999999999998886544332221 223788999999999988 558999988777542 1 1111
Q ss_pred CCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCc-------eeeE----EeeccccCeEEEEEc--------cCC
Q 014125 217 NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-------ELLY----VLHGQEGGVTHVQFS--------RDG 277 (430)
Q Consensus 217 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~-------~~~~----~~~~~~~~i~~~~~~--------~~~ 277 (430)
.+.+ .....+.|++ +...++.+-.+|.+.+||.... .+.. .+......|..+.|. |+.
T Consensus 153 eLkg--~~l~hv~ws~-D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdr 229 (1189)
T KOG2041|consen 153 ELKG--QLLAHVLWSE-DLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDR 229 (1189)
T ss_pred hcch--heccceeecc-cHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCC
Confidence 1111 1245789999 5567777888999999997532 1111 111122235666664 467
Q ss_pred CEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccC---------CcEEEEEcCCCCeec
Q 014125 278 NYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQD---------GLVHIYDLQTGKWIS 348 (430)
Q Consensus 278 ~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------g~i~vwd~~~~~~~~ 348 (430)
..|+++- ..|.+.+..-.+...+...- ..-.+....|+++|..|+.++.+ +.|.+|.. -|+.+.
T Consensus 230 P~lavcy-~nGr~QiMR~eND~~Pvv~d-----tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~g 302 (1189)
T KOG2041|consen 230 PRLAVCY-ANGRMQIMRSENDPEPVVVD-----TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVG 302 (1189)
T ss_pred CEEEEEE-cCceehhhhhcCCCCCeEEe-----cccEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheE
Confidence 7888888 89999887666554443221 23567889999999999998864 34666653 478888
Q ss_pred ccccccCCeeEEEEcCCCcEEEEeeCCceeeecCC----------Ccc--cccc---CCCcEEEEeeccccc
Q 014125 349 GFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDF----------EDL--HLSG---DENCVSVWSFLYASM 405 (430)
Q Consensus 349 ~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~----------~~l--~~~~---~d~~i~~w~~~~~~~ 405 (430)
+++.....|++++|-..|-.++.+- |+.+.+-+. +++ +-.+ ....|.+||...++.
T Consensus 303 tlkvpg~~It~lsWEg~gLriA~Av-dsfiyfanIRP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek 373 (1189)
T KOG2041|consen 303 TLKVPGSCITGLSWEGTGLRIAIAV-DSFIYFANIRPEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEK 373 (1189)
T ss_pred EEecCCceeeeeEEcCCceEEEEEe-cceEEEEeecccceEEEeeeEEEEEEccCCCcceEEEEEecccChh
Confidence 8888888999999998877776653 444443221 111 1222 245799999987654
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.8e-14 Score=120.77 Aligned_cols=202 Identities=14% Similarity=0.167 Sum_probs=133.2
Q ss_pred eEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEE-----cCCCCceEEEecCCCeEEEE
Q 014125 176 AFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAF-----SPTHTGMLAIGSYSQTSAIY 250 (430)
Q Consensus 176 v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----~~~~~~~l~~~~~dg~v~~~ 250 (430)
+....++-.|..|+-.....+++|+.+....... .+.+....... .+|=+| .| .+--+++|-.-|.|.++
T Consensus 126 ~~~~~~~~~gd~lcFnvg~~lyv~~~~g~~~~~~---pi~k~~y~gt~-P~cHdfn~~~a~~-~g~dllIGf~tGqvq~i 200 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNVGRELYVYSYRGAADLSK---PIDKREYKGTS-PTCHDFNSFTATP-KGLDLLIGFTTGQVQLI 200 (636)
T ss_pred eeeccccCCCCEEEEecCCeEEEEEccCcchhcc---chhhhcccCCC-CceecccccccCC-CCcceEEeeccCceEEe
Confidence 3344555567777766667888898875222111 11111111111 222233 23 45567888889999999
Q ss_pred EcCCceeeEEee----ccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCc--------------eEEE---------
Q 014125 251 REDNMELLYVLH----GQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAV--------------QVVY--------- 303 (430)
Q Consensus 251 d~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~--------------~~~~--------- 303 (430)
|....+..+.+. -....++++.|-|.+..++...-.+|.+++||..... ....
T Consensus 201 dp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~r 280 (636)
T KOG2394|consen 201 DPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTR 280 (636)
T ss_pred cchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccC
Confidence 876643322221 1236899999999665444444389999999763210 0000
Q ss_pred -EeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeecC
Q 014125 304 -KLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDD 382 (430)
Q Consensus 304 -~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~ 382 (430)
...........|..++|+|||++||+.+.||.++|||..+.+++..++.--+...+++|+|||++|++|+.|--|.||.
T Consensus 281 NPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwS 360 (636)
T KOG2394|consen 281 NPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWS 360 (636)
T ss_pred CccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEE
Confidence 0001112235788899999999999999999999999999999999988888999999999999999998766666663
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.2e-13 Score=117.26 Aligned_cols=275 Identities=13% Similarity=0.115 Sum_probs=168.1
Q ss_pred CeEEEEeCCCCCCccccccccccc-------ccCcccceeeecCCCeeeeeeeccccCccCCCCceE-EEEeCCCcEEEE
Q 014125 82 KTLRIFSLPENGISYDVNACSLAK-------DQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF-ASTTRDHPIHLW 153 (430)
Q Consensus 82 g~v~iw~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~vw 153 (430)
..|+||++..++.+.......... ..........+.+...-+.+.. +|||.++ ++|..--.|++|
T Consensus 7 NdVkiYnvS~~kslP~Wls~r~kR~lkkd~~~~~rieLiQdfe~p~ast~ik~-------s~DGqY~lAtG~YKP~ikvy 79 (703)
T KOG2321|consen 7 NDVKIYNVSAGKSLPDWLSDRRKRQLKKDVDYRQRIELIQDFEMPTASTRIKV-------SPDGQYLLATGTYKPQIKVY 79 (703)
T ss_pred CceEEEEeecCCCchhhhhhHHHHHHhhchHHHHHHHHHHhcCCccccceeEe-------cCCCcEEEEecccCCceEEE
Confidence 358888887665544432211000 0011112223444445555555 8899875 566677899999
Q ss_pred eccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcC
Q 014125 154 DATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSP 232 (430)
Q Consensus 154 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 232 (430)
|+..-..... .|...+ .|.-.-.+.|-..++ -..|.+|.+-.... .. .... -+..-..++++.
T Consensus 80 dlanLSLKFE--RhlDae---~V~feiLsDD~SK~v~L~~DR~IefHak~G--~h----y~~R-----IP~~GRDm~y~~ 143 (703)
T KOG2321|consen 80 DLANLSLKFE--RHLDAE---VVDFEILSDDYSKSVFLQNDRTIEFHAKYG--RH----YRTR-----IPKFGRDMKYHK 143 (703)
T ss_pred Ecccceeeee--eccccc---ceeEEEeccchhhheEeecCceeeehhhcC--ee----eeee-----cCcCCccccccC
Confidence 9876543222 221111 333333333332232 34566665543211 00 0000 011235566665
Q ss_pred CCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecc--cC
Q 014125 233 THTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRS--SE 310 (430)
Q Consensus 233 ~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~ 310 (430)
... -|.+++....|+-+++..|..+..+....+.++++..++-..+|++|+ .+|.|..||.+........-... ..
T Consensus 144 ~sc-Dly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt-~~g~VEfwDpR~ksrv~~l~~~~~v~s 221 (703)
T KOG2321|consen 144 PSC-DLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGT-EDGVVEFWDPRDKSRVGTLDAASSVNS 221 (703)
T ss_pred CCc-cEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecc-cCceEEEecchhhhhheeeecccccCC
Confidence 333 345555567899999999999998888789999999999988898888 99999999999764432221111 12
Q ss_pred C-----ccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccc-cccCCeeEEEEcCC--CcEEEEeeCCceeeecC
Q 014125 311 H-----TNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQ-AAADTVNGFSFHPF--LPMAASSSGHRRFPVDD 382 (430)
Q Consensus 311 ~-----~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~--~~~l~s~~~d~~~~vw~ 382 (430)
+ ...|+++.|+.+|-.+++|+.+|.|.|||+++.+++..-. +..-+|..+.|.+. ++.+++.. ...++||+
T Consensus 222 ~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~D-k~~~kiWd 300 (703)
T KOG2321|consen 222 HPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMD-KRILKIWD 300 (703)
T ss_pred CccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecc-hHHhhhcc
Confidence 2 2349999999999999999999999999999998876544 22348999999876 34555542 33444443
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.3e-11 Score=102.91 Aligned_cols=280 Identities=9% Similarity=0.055 Sum_probs=167.3
Q ss_pred CeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeC----------CCcEE
Q 014125 82 KTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTR----------DHPIH 151 (430)
Q Consensus 82 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~----------dg~i~ 151 (430)
++|.+.|..+.+....+ .+.+.|+.. ++||++.|+++.. +..|.
T Consensus 27 ~~v~ViD~~~~~v~g~i-------------------------~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~ 80 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMT-------------------------DGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVE 80 (352)
T ss_pred ceEEEEECCCCEEEEEE-------------------------EccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEE
Confidence 78999998876443211 122344443 4889988887765 78899
Q ss_pred EEeccCCceeeeeecccccc--cccceEEEEECCCCcEEEEE--c-CCeEEEEEcCCCCCcccccccccCCCCCCCcceE
Q 014125 152 LWDATTGLLRCTYRAYDAVD--EITAAFSVAFNPTGTKIFAG--Y-NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMS 226 (430)
Q Consensus 152 vwd~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~--~-d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~ 226 (430)
+||..+.+.+..+....... .......++++|||++++.. . +..|.+.|+.+..... .+. - .+...
T Consensus 81 v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~----ei~----v-p~~~~ 151 (352)
T TIGR02658 81 VIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVR----MMD----V-PDCYH 151 (352)
T ss_pred EEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEE----EEe----C-CCCcE
Confidence 99999999998887643311 11234478999999999965 3 7899999998742111 000 0 00011
Q ss_pred EEEEcCCCCceEEEecCCCeEEEEEcCC-cee-eEE---eeccccCe-EEEEEcc-CCCEEEEEecCCCeEEEEeCCCCc
Q 014125 227 AIAFSPTHTGMLAIGSYSQTSAIYREDN-MEL-LYV---LHGQEGGV-THVQFSR-DGNYLYTGGRKDPYILCWDLRKAV 299 (430)
Q Consensus 227 ~~~~~~~~~~~l~~~~~dg~v~~~d~~~-~~~-~~~---~~~~~~~i-~~~~~~~-~~~~l~~~~~~d~~i~i~d~~~~~ 299 (430)
-...+. ..++ +-+.||......+.+ ++. ... +.....++ ..-.|.+ +|++++++. . |.|.+.|+....
T Consensus 152 vy~t~e-~~~~--~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~-e-G~V~~id~~~~~ 226 (352)
T TIGR02658 152 IFPTAN-DTFF--MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTY-T-GKIFQIDLSSGD 226 (352)
T ss_pred EEEecC-CccE--EEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEec-C-CeEEEEecCCCc
Confidence 111111 1111 112344433332222 111 111 11100000 0014455 888888887 4 999999975542
Q ss_pred eEEEEeec---c-----cCCccceEEEEEcCCCCEEEEEc----------cCCcEEEEEcCCCCeecccccccCCeeEEE
Q 014125 300 QVVYKLYR---S-----SEHTNQRILFDIEPSGRHLGTGG----------QDGLVHIYDLQTGKWISGFQAAADTVNGFS 361 (430)
Q Consensus 300 ~~~~~~~~---~-----~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~ 361 (430)
........ . .-....+.-++++|+++.++... ..+.|.++|..+++.+..+.. ...+.+++
T Consensus 227 ~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~ia 305 (352)
T TIGR02658 227 AKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSIN 305 (352)
T ss_pred ceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEE
Confidence 22111111 0 01223344499999998887743 225799999999999988874 35889999
Q ss_pred EcCCCc-EEEEeeCCceeeecCCCccccccCCCcEEEEeecccccccccCCCCcceee
Q 014125 362 FHPFLP-MAASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYASMMENADGINGCEFN 418 (430)
Q Consensus 362 ~~~~~~-~l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~ 418 (430)
++|+++ +|.+... .++.|.+.|....+.+..+...-..++.
T Consensus 306 vS~Dgkp~lyvtn~----------------~s~~VsViD~~t~k~i~~i~~vg~~P~~ 347 (352)
T TIGR02658 306 VSQDAKPLLYALST----------------GDKTLYIFDAETGKELSSVNQLGRGPQV 347 (352)
T ss_pred ECCCCCeEEEEeCC----------------CCCcEEEEECcCCeEEeeeccCCCCCeE
Confidence 999999 7776652 4678999999988888877544333443
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.3e-12 Score=110.52 Aligned_cols=291 Identities=13% Similarity=0.186 Sum_probs=184.8
Q ss_pred CCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCC
Q 014125 59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS 138 (430)
Q Consensus 59 h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 138 (430)
..-++..++|||.|.+|++....| |.+|.-.... ....+.| ..|+.+.| +|.+
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~------------------~l~~~~~-~~V~~~~f-------SP~~ 83 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKA------------------KLVRFRH-PDVKYLDF-------SPNE 83 (561)
T ss_pred cCcchhheeecCcchheehhhccc-eEEccccchh------------------heeeeec-CCceeccc-------Cccc
Confidence 455789999999999999887764 8899766432 1222223 35777777 7788
Q ss_pred ceEEEEeCCC---------------cEEEEeccCCceeeeeecccccccccceE-EEEECCCCcEEEEEcCCeEEEEEcC
Q 014125 139 CVFASTTRDH---------------PIHLWDATTGLLRCTYRAYDAVDEITAAF-SVAFNPTGTKIFAGYNKSVRVFDVH 202 (430)
Q Consensus 139 ~~l~~~~~dg---------------~i~vwd~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~d~~i~v~d~~ 202 (430)
++|.+=+..+ .+.+||+.+|..+..+....... ..+ -+.|+-+..+++=-....++|+++
T Consensus 84 kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~---~~Wp~~k~s~~D~y~ARvv~~sl~i~e~- 159 (561)
T COG5354 84 KYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPY---LGWPVLKFSIDDKYVARVVGSSLYIHEI- 159 (561)
T ss_pred ceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcc---cccceeeeeecchhhhhhccCeEEEEec-
Confidence 8988865543 49999999999998887765421 133 578888888877325567888886
Q ss_pred CCCCcccccccccCCCCCCCcceEEEEEcCCC-CceEEE-----ecCCCeEEEEEcCCceee------------------
Q 014125 203 RPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTH-TGMLAI-----GSYSQTSAIYREDNMELL------------------ 258 (430)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~-----~~~dg~v~~~d~~~~~~~------------------ 258 (430)
++......+..+. ...+....|+|.+ ...|+. ....+.+++|.+..+..+
T Consensus 160 t~n~~~~p~~~lr------~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~ 233 (561)
T COG5354 160 TDNIEEHPFKNLR------PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVL 233 (561)
T ss_pred CCccccCchhhcc------ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecC
Confidence 3221111111110 1335555555531 111222 223344444443322111
Q ss_pred ----------------------------------EEeeccccCeEEEEEccCCCEEEEEe-cCCCeEEEEeCCCCceEEE
Q 014125 259 ----------------------------------YVLHGQEGGVTHVQFSRDGNYLYTGG-RKDPYILCWDLRKAVQVVY 303 (430)
Q Consensus 259 ----------------------------------~~~~~~~~~i~~~~~~~~~~~l~~~~-~~d~~i~i~d~~~~~~~~~ 303 (430)
.......++|...+|.|.++.+++.+ -++-.+.++|++..- ..
T Consensus 234 g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl--~~ 311 (561)
T COG5354 234 GKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNL--RF 311 (561)
T ss_pred CceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccce--EE
Confidence 11112357888999999888766544 378889999998762 11
Q ss_pred EeecccCCccceEEEEEcCCCCEEEEEccC---CcEEEEEcCCCCeec-ccccccCCeeEEEEcCCCcEEEEeeCCceee
Q 014125 304 KLYRSSEHTNQRILFDIEPSGRHLGTGGQD---GLVHIYDLQTGKWIS-GFQAAADTVNGFSFHPFLPMAASSSGHRRFP 379 (430)
Q Consensus 304 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~ 379 (430)
. .....-..+.|+|.+++++.++-| |.+-+||......+. .+.+. ..+-+.|+|+++++.+....-.++
T Consensus 312 ~-----~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~--n~s~~~wspd~qF~~~~~ts~k~~ 384 (561)
T COG5354 312 Y-----FPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSPDGQFYDTDTTSEKLR 384 (561)
T ss_pred e-----cCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC--CceEeeccCCceEEEecCCCcccc
Confidence 1 223344568899999999998876 679999987654433 44432 345568999999998887654443
Q ss_pred ecCCCccccccCCCcEEEEeecccccc
Q 014125 380 VDDFEDLHLSGDENCVSVWSFLYASMM 406 (430)
Q Consensus 380 vw~~~~l~~~~~d~~i~~w~~~~~~~~ 406 (430)
.|+.|++|++.....-
T Consensus 385 -----------~Dn~i~l~~v~g~~~f 400 (561)
T COG5354 385 -----------VDNSIKLWDVYGAKVF 400 (561)
T ss_pred -----------cCcceEEEEecCchhh
Confidence 3889999998765543
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.4e-14 Score=114.93 Aligned_cols=273 Identities=14% Similarity=0.227 Sum_probs=179.0
Q ss_pred CCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCc-----ccccccccccccCcccceeeecCCCeeeeeeeccccCc
Q 014125 59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGIS-----YDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (430)
Q Consensus 59 h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (430)
..+.|+++.|...|.||++|...|.|.+|.-....-. .+++.+.. .-.+... ..-...|..+.|...
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~---EFDYLkS--leieEKin~I~w~~~--- 96 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHEL---EFDYLKS--LEIEEKINAIEWFDD--- 96 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhccccc---chhhhhh--ccHHHHhhheeeecC---
Confidence 3456999999999999999999999999976543210 11111110 0011111 222357888998542
Q ss_pred cCCCCceEEEEeCCCcEEEEeccCCce--e--------------------ee-----eecc-----------cccccccc
Q 014125 134 SDPTSCVFASTTRDHPIHLWDATTGLL--R--------------------CT-----YRAY-----------DAVDEITA 175 (430)
Q Consensus 134 ~~~~~~~l~~~~~dg~i~vwd~~~~~~--~--------------------~~-----~~~~-----------~~~~~~~~ 175 (430)
.....++..+.|.+|++|.+..... + .. +..+ ....|.-.
T Consensus 97 --t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yh 174 (460)
T COG5170 97 --TGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYH 174 (460)
T ss_pred --CCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeE
Confidence 2335677888999999998754310 0 00 0000 00123445
Q ss_pred eEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCc
Q 014125 176 AFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM 255 (430)
Q Consensus 176 v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~ 255 (430)
+.++.|+.|.+.++++.|-.|.+|+++.....+............-..-|++..|+|...+.+.-.+..|.|++-|++..
T Consensus 175 iNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~ 254 (460)
T COG5170 175 INSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQS 254 (460)
T ss_pred eeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhh
Confidence 77999999999999999999999999876655443322222222233568899999988888999999999999999843
Q ss_pred ee------eEE----------eeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeeccc---------C
Q 014125 256 EL------LYV----------LHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSS---------E 310 (430)
Q Consensus 256 ~~------~~~----------~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~---------~ 310 (430)
.. +.. +..-...|..+.|+++|+++++-. --+|++||.+..+.++..+.-.. .
T Consensus 255 alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd--yltvkiwDvnm~k~pikTi~~h~~l~~~l~d~Y 332 (460)
T COG5170 255 ALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD--YLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVY 332 (460)
T ss_pred hhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec--cceEEEEecccccCCceeechHHHHHHHHHhhh
Confidence 21 111 111234688899999999998754 67999999998776655441100 0
Q ss_pred Cccce---EEEEEcCCCCEEEEEccCCcEEEEEcCC
Q 014125 311 HTNQR---ILFDIEPSGRHLGTGGQDGLVHIYDLQT 343 (430)
Q Consensus 311 ~~~~v---~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 343 (430)
....| ..+.|+.+...+++|+..+..-+|...+
T Consensus 333 EnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~s 368 (460)
T COG5170 333 ENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTDS 368 (460)
T ss_pred hccceeeeEEEEecCCcccccccccccceeeecccc
Confidence 11222 3478888889999999988888887543
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.4e-10 Score=95.92 Aligned_cols=282 Identities=15% Similarity=0.180 Sum_probs=178.9
Q ss_pred CCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCC---CcEEEEeccC
Q 014125 81 DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRD---HPIHLWDATT 157 (430)
Q Consensus 81 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~vwd~~~ 157 (430)
+.-|++|++.+..-. ..............-++| +|+++.|+++-++ |.|..|.+..
T Consensus 15 s~gI~v~~ld~~~g~--------------l~~~~~v~~~~nptyl~~-------~~~~~~LY~v~~~~~~ggvaay~iD~ 73 (346)
T COG2706 15 SQGIYVFNLDTKTGE--------------LSLLQLVAELGNPTYLAV-------NPDQRHLYVVNEPGEEGGVAAYRIDP 73 (346)
T ss_pred CCceEEEEEeCcccc--------------cchhhhccccCCCceEEE-------CCCCCEEEEEEecCCcCcEEEEEEcC
Confidence 456999998743211 111112223345555666 7788889888654 6677777764
Q ss_pred --CceeeeeecccccccccceEEEEECCCCcEEEEE--cCCeEEEEEcCCCCCcccccccccCCCC-CC----CcceEEE
Q 014125 158 --GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG--YNKSVRVFDVHRPGRDFEKYSTLKGNKE-GQ----AGIMSAI 228 (430)
Q Consensus 158 --~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~~~-~~----~~~v~~~ 228 (430)
|+....-..... + .+...+++++++++++++ ..|.|.++-++..+.............. .| ...+...
T Consensus 74 ~~G~Lt~ln~~~~~-g--~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a 150 (346)
T COG2706 74 DDGRLTFLNRQTLP-G--SPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSA 150 (346)
T ss_pred CCCeEEEeeccccC-C--CCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCcccee
Confidence 443322111110 1 144789999999999965 6799999999876544333222221111 11 1237888
Q ss_pred EEcCCCCceEEEecCCCeEEEEEcCCceeeEEee---ccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEe
Q 014125 229 AFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH---GQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKL 305 (430)
Q Consensus 229 ~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~ 305 (430)
.+.|++..++++.-.--.|.+|++..++....-. .....-..|.|+|++++.++.+.-+++|.+|...........+
T Consensus 151 ~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~l 230 (346)
T COG2706 151 NFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEEL 230 (346)
T ss_pred eeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEe
Confidence 9999554444444445679999999775432211 2345678999999999999998789999999998753322222
Q ss_pred ecc------cCCccceEEEEEcCCCCEEEEEcc-CCcEEEEEcCC--CCe--ecccccccCCeeEEEEcCCCcEEEEeeC
Q 014125 306 YRS------SEHTNQRILFDIEPSGRHLGTGGQ-DGLVHIYDLQT--GKW--ISGFQAAADTVNGFSFHPFLPMAASSSG 374 (430)
Q Consensus 306 ~~~------~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 374 (430)
... -........+.++|+|++|.++.. ...|.+|.+.. +++ +.....+....+.+.|+|.+++|+++..
T Consensus 231 Q~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q 310 (346)
T COG2706 231 QTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQ 310 (346)
T ss_pred eeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEcc
Confidence 211 123456678899999999988764 24688887764 332 2222334445789999999999999986
Q ss_pred CceeeecCCCccccccCCCcEEEEeecc
Q 014125 375 HRRFPVDDFEDLHLSGDENCVSVWSFLY 402 (430)
Q Consensus 375 d~~~~vw~~~~l~~~~~d~~i~~w~~~~ 402 (430)
+ +..|.++....
T Consensus 311 ~----------------sd~i~vf~~d~ 322 (346)
T COG2706 311 K----------------SDNITVFERDK 322 (346)
T ss_pred C----------------CCcEEEEEEcC
Confidence 4 34588887764
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.4e-12 Score=115.67 Aligned_cols=219 Identities=14% Similarity=0.155 Sum_probs=135.7
Q ss_pred cCCCeeeeeeeccccCccCCCCceEEEEeCC-C--cEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE-
Q 014125 117 TEGESVYDFCWFPHMSASDPTSCVFASTTRD-H--PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG- 191 (430)
Q Consensus 117 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d-g--~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~- 191 (430)
.....+....| +|||+.|+..+.+ + .|.+||+.+++....... .. ......|+|||+.|+ +.
T Consensus 215 ~~~~~~~~p~w-------SPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~-~g-----~~~~~~wSPDG~~La~~~~ 281 (448)
T PRK04792 215 RSPEPLMSPAW-------SPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSF-PG-----INGAPRFSPDGKKLALVLS 281 (448)
T ss_pred cCCCcccCceE-------CCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCC-CC-----CcCCeeECCCCCEEEEEEe
Confidence 34457778888 7899988876543 3 588899988765332221 11 234689999999887 33
Q ss_pred cCCe--EEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCC--eEEEEEcCCceeeEEeeccccC
Q 014125 192 YNKS--VRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ--TSAIYREDNMELLYVLHGQEGG 267 (430)
Q Consensus 192 ~d~~--i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~v~~~d~~~~~~~~~~~~~~~~ 267 (430)
.++. |+++|+..+.. ..+ ..+........|+|++..++++...++ .|+++|+.+++.... ......
T Consensus 282 ~~g~~~Iy~~dl~tg~~-----~~l----t~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L-t~~g~~ 351 (448)
T PRK04792 282 KDGQPEIYVVDIATKAL-----TRI----TRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL-TFEGEQ 351 (448)
T ss_pred CCCCeEEEEEECCCCCe-----EEC----ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE-ecCCCC
Confidence 5554 77777765321 111 122334567899996665556555454 466667776664332 212223
Q ss_pred eEEEEEccCCCEEEEEecCCC--eEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccC-C--cEEEEEcC
Q 014125 268 VTHVQFSRDGNYLYTGGRKDP--YILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQD-G--LVHIYDLQ 342 (430)
Q Consensus 268 i~~~~~~~~~~~l~~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i~vwd~~ 342 (430)
....+|+|+|++|+..+..++ .|.++|+.++... .+.. .. ......|+|+|+.|+..+.+ | .+++++.
T Consensus 352 ~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~--~lt~-~~---~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~- 424 (448)
T PRK04792 352 NLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ--VLTS-TR---LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI- 424 (448)
T ss_pred CcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE--EccC-CC---CCCCceECCCCCEEEEEEecCCceEEEEEEC-
Confidence 456799999999988763445 4556777766432 2211 11 12245799999987765543 3 3777787
Q ss_pred CCCeecccccccCCeeEEEEcCC
Q 014125 343 TGKWISGFQAAADTVNGFSFHPF 365 (430)
Q Consensus 343 ~~~~~~~~~~~~~~v~~~~~~~~ 365 (430)
+++....+..+.+.+...+|+|-
T Consensus 425 ~G~~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 425 DGRFKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred CCCceEECcCCCCCcCCCccCCC
Confidence 46666667666667788889873
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.7e-10 Score=95.45 Aligned_cols=280 Identities=13% Similarity=0.154 Sum_probs=176.7
Q ss_pred ccCCCceeEEEECcCCceEEEecC---CCeEEEEeCCC--CCCcccccccccccccCcccceeeecCCCeeeeeeecccc
Q 014125 57 SIPNNFLKGIKWSPDGSSFLTSSE---DKTLRIFSLPE--NGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (430)
Q Consensus 57 ~~h~~~v~~~~~sp~~~~l~s~~~---dg~v~iw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (430)
..+.+..+-|+|+|+++.|.++-. +|.|.-|.++. +.+.. .......+.+-..++.
T Consensus 36 v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~---------------ln~~~~~g~~p~yvsv---- 96 (346)
T COG2706 36 VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTF---------------LNRQTLPGSPPCYVSV---- 96 (346)
T ss_pred ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEE---------------eeccccCCCCCeEEEE----
Confidence 345667889999999999988855 46777777764 22210 0011111222244555
Q ss_pred CccCCCCceEEEEeC-CCcEEEEeccC-Cceeee---eecccc----cccccceEEEEECCCCcEEEEE--cCCeEEEEE
Q 014125 132 SASDPTSCVFASTTR-DHPIHLWDATT-GLLRCT---YRAYDA----VDEITAAFSVAFNPTGTKIFAG--YNKSVRVFD 200 (430)
Q Consensus 132 ~~~~~~~~~l~~~~~-dg~i~vwd~~~-~~~~~~---~~~~~~----~~~~~~v~~~~~~~~~~~l~~~--~d~~i~v~d 200 (430)
++++++++++.. .|.|.++-+.. |..... ...... ......+....+.|+++++++. .-..|.+|+
T Consensus 97 ---d~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~ 173 (346)
T COG2706 97 ---DEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYD 173 (346)
T ss_pred ---CCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEE
Confidence 788999888866 47899999865 433222 211111 0111227788999999999854 456799999
Q ss_pred cCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCc-eeeEEeec---------cccCeEE
Q 014125 201 VHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-ELLYVLHG---------QEGGVTH 270 (430)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~-~~~~~~~~---------~~~~i~~ 270 (430)
+..+..... ... ........+.|.|+|++.-..++.--+++|.+|..... ..+..++. -......
T Consensus 174 ~~dg~L~~~--~~~---~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aa 248 (346)
T COG2706 174 LDDGKLTPA--DPA---EVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAA 248 (346)
T ss_pred cccCccccc--ccc---ccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeE
Confidence 984322111 111 11334557899999965555556667999999988763 22222221 1235678
Q ss_pred EEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCC-cEEEEEcC--CCCee
Q 014125 271 VQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDG-LVHIYDLQ--TGKWI 347 (430)
Q Consensus 271 ~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~vwd~~--~~~~~ 347 (430)
|..+|+|++|+++.+....|.+|.+......+........+......+.++|+|++|+++.+++ .|.+|..+ +|++-
T Consensus 249 Ihis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~ 328 (346)
T COG2706 249 IHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLT 328 (346)
T ss_pred EEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEE
Confidence 9999999999999877789999998876444434333344555578899999999999988764 58888665 55543
Q ss_pred cccc-cccCCeeEEEEc
Q 014125 348 SGFQ-AAADTVNGFSFH 363 (430)
Q Consensus 348 ~~~~-~~~~~v~~~~~~ 363 (430)
.... .......|+.|.
T Consensus 329 ~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 329 LLGRYAVVPEPVCVKFL 345 (346)
T ss_pred ecccccCCCCcEEEEEc
Confidence 3322 222334555553
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.3e-12 Score=114.29 Aligned_cols=214 Identities=18% Similarity=0.217 Sum_probs=134.8
Q ss_pred CCCeeeeeeeccccCccCCCCceEEEEeCC---CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE-c
Q 014125 118 EGESVYDFCWFPHMSASDPTSCVFASTTRD---HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-Y 192 (430)
Q Consensus 118 ~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~ 192 (430)
+...+...+| +|+|+.|+.+..+ ..|++||+.+++...... ... .+.+++|+|+++.|+ +. .
T Consensus 188 ~~~~~~~p~~-------Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~-~~~-----~~~~~~~spDg~~l~~~~~~ 254 (417)
T TIGR02800 188 SREPILSPAW-------SPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS-FPG-----MNGAPAFSPDGSKLAVSLSK 254 (417)
T ss_pred CCCceecccC-------CCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeec-CCC-----CccceEECCCCCEEEEEECC
Confidence 4446777778 7899999887654 479999998886543322 211 455789999998777 33 3
Q ss_pred C--CeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCC--eEEEEEcCCceeeEEeeccccCe
Q 014125 193 N--KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ--TSAIYREDNMELLYVLHGQEGGV 268 (430)
Q Consensus 193 d--~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~v~~~d~~~~~~~~~~~~~~~~i 268 (430)
+ ..|++|++..+.. ..+ ..+........|+|++..+++++..++ .|+++|+.+++.. .+..+...+
T Consensus 255 ~~~~~i~~~d~~~~~~-----~~l----~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~ 324 (417)
T TIGR02800 255 DGNPDIYVMDLDGKQL-----TRL----TNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYN 324 (417)
T ss_pred CCCccEEEEECCCCCE-----EEC----CCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCc
Confidence 3 3588888865321 111 122233446689996554555554444 5788888766543 343345667
Q ss_pred EEEEEccCCCEEEEEecCCC---eEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCC---cEEEEEcC
Q 014125 269 THVQFSRDGNYLYTGGRKDP---YILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDG---LVHIYDLQ 342 (430)
Q Consensus 269 ~~~~~~~~~~~l~~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~vwd~~ 342 (430)
..+.|+|+|++|+.++ .++ .|.+||+.+.... .+.. ........|+|+|++|+..+.++ .+++.+..
T Consensus 325 ~~~~~spdg~~i~~~~-~~~~~~~i~~~d~~~~~~~--~l~~----~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 325 ASPSWSPDGDLIAFVH-REGGGFNIAVMDLDGGGER--VLTD----TGLDESPSFAPNGRMILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred cCeEECCCCCEEEEEE-ccCCceEEEEEeCCCCCeE--EccC----CCCCCCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence 7889999999999888 555 7889998875332 2211 11234468999999888777654 35565544
Q ss_pred CCCeecccccccCCeeEEEE
Q 014125 343 TGKWISGFQAAADTVNGFSF 362 (430)
Q Consensus 343 ~~~~~~~~~~~~~~v~~~~~ 362 (430)
++....+..+.+.+..++|
T Consensus 398 -g~~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 398 -GRFRARLPLGNGDVREPAW 416 (417)
T ss_pred -CceeeECCCCCCCcCCCCC
Confidence 4444555444445555544
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2e-12 Score=112.95 Aligned_cols=207 Identities=19% Similarity=0.241 Sum_probs=149.9
Q ss_pred CCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCccccccccc
Q 014125 136 PTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLK 215 (430)
Q Consensus 136 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~ 215 (430)
|...++|....||.+++|+...++....+........ ...+..| .+.....+.+......
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~--t~~~~~w------------------~L~~~~s~~k~~~~~~ 62 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSG--TCTYTKW------------------GLSADYSPMKWLSLEK 62 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccC--cceeEEE------------------EEEeccchHHHHhHHH
Confidence 3466899999999999999999988777765433211 2223333 2222111111110000
Q ss_pred CCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEee--ccccCeEEEEEccCCCEEEEEecCCCeEEEE
Q 014125 216 GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH--GQEGGVTHVQFSRDGNYLYTGGRKDPYILCW 293 (430)
Q Consensus 216 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~ 293 (430)
... -+. +...++-|...|.|.+|+...++....+. .|.+.|+++.++.+-..|++++ .|+.+..|
T Consensus 63 ---------~~~--~s~-~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~-ad~~v~~~ 129 (541)
T KOG4547|consen 63 ---------AKK--ASL-DTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVG-ADLKVVYI 129 (541)
T ss_pred ---------Hhh--ccC-CceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecC-CceeEEEE
Confidence 000 011 55688889999999999999999887775 6889999999999999999999 99999999
Q ss_pred eCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCC-----CcE
Q 014125 294 DLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPF-----LPM 368 (430)
Q Consensus 294 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~ 368 (430)
+........ .. ......+.+++.+|||..+++|+. .|++||+++++.+..|.+|.++|++++|.-+ |.+
T Consensus 130 ~~~~~~~~~-~~---~~~~~~~~sl~is~D~~~l~~as~--~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~ 203 (541)
T KOG4547|consen 130 LEKEKVIIR-IW---KEQKPLVSSLCISPDGKILLTASR--QIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKY 203 (541)
T ss_pred ecccceeee-ee---ccCCCccceEEEcCCCCEEEeccc--eEEEEEccCceEEEEecCCCcceEEEEEEEeccccccce
Confidence 998764322 22 455667889999999999998874 7999999999999999999999999999876 555
Q ss_pred EEEe-eCCceeeec
Q 014125 369 AASS-SGHRRFPVD 381 (430)
Q Consensus 369 l~s~-~~d~~~~vw 381 (430)
+.++ ..+..+.+|
T Consensus 204 vLssa~~~r~i~~w 217 (541)
T KOG4547|consen 204 VLSSAAAERGITVW 217 (541)
T ss_pred eeeccccccceeEE
Confidence 5444 334445555
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.1e-11 Score=113.46 Aligned_cols=219 Identities=16% Similarity=0.155 Sum_probs=138.2
Q ss_pred cCCCeeeeeeeccccCccCCCCceEEEEeCC---CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE-
Q 014125 117 TEGESVYDFCWFPHMSASDPTSCVFASTTRD---HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG- 191 (430)
Q Consensus 117 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~- 191 (430)
.+...+....| +|||+.|+..+.+ ..|.+|++.+++....... .. .+....|+|+|+.|+ +.
T Consensus 196 ~~~~~~~~p~w-------SpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~-~g-----~~~~~~~SpDG~~la~~~~ 262 (430)
T PRK00178 196 QSREPILSPRW-------SPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNF-EG-----LNGAPAWSPDGSKLAFVLS 262 (430)
T ss_pred cCCCceeeeeE-------CCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCC-CC-----CcCCeEECCCCCEEEEEEc
Confidence 44567888889 7899988876543 3689999988865433221 11 344689999999887 33
Q ss_pred cCC--eEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCC--eEEEEEcCCceeeEEeeccccC
Q 014125 192 YNK--SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ--TSAIYREDNMELLYVLHGQEGG 267 (430)
Q Consensus 192 ~d~--~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~v~~~d~~~~~~~~~~~~~~~~ 267 (430)
.++ .|++||+..+.. ..+ ..+........|+|++..++++...+| .|+++++.+++...... ....
T Consensus 263 ~~g~~~Iy~~d~~~~~~-----~~l----t~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~-~~~~ 332 (430)
T PRK00178 263 KDGNPEIYVMDLASRQL-----SRV----TNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF-VGNY 332 (430)
T ss_pred cCCCceEEEEECCCCCe-----EEc----ccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCC
Confidence 344 688888876321 111 122334556789996665656555444 57777887776433221 2233
Q ss_pred eEEEEEccCCCEEEEEecCCC--eEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccC---CcEEEEEcC
Q 014125 268 VTHVQFSRDGNYLYTGGRKDP--YILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQD---GLVHIYDLQ 342 (430)
Q Consensus 268 i~~~~~~~~~~~l~~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~vwd~~ 342 (430)
.....|+|+|+.|+.....++ .|.++|+.++... .+.. .. ......|+|+|+.++..+.+ ..|+++++.
T Consensus 333 ~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~--~lt~-~~---~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 333 NARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR--ILTD-TS---LDESPSVAPNGTMLIYATRQQGRGVLMLVSIN 406 (430)
T ss_pred ccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE--EccC-CC---CCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 456789999999988773343 5888998876432 2211 11 12246899999998776654 347777775
Q ss_pred CCCeecccccccCCeeEEEEcCC
Q 014125 343 TGKWISGFQAAADTVNGFSFHPF 365 (430)
Q Consensus 343 ~~~~~~~~~~~~~~v~~~~~~~~ 365 (430)
+.....+..+.+.+...+|+|-
T Consensus 407 -g~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 407 -GRVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred -CCceEECcCCCCCcCCCccCCC
Confidence 4444455555566778888874
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.3e-11 Score=110.09 Aligned_cols=222 Identities=14% Similarity=0.079 Sum_probs=132.4
Q ss_pred CeeeeeeeccccCccCCCCce--E-EEEeCCC--cEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-E-c
Q 014125 120 ESVYDFCWFPHMSASDPTSCV--F-ASTTRDH--PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-G-Y 192 (430)
Q Consensus 120 ~~v~~~~~~~~~~~~~~~~~~--l-~~~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~-~ 192 (430)
.....-+| +|||+. + ++...+| .|.+.++.+++....... .. .....+|+|||+.|+. + .
T Consensus 185 ~~~~sP~w-------SPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~-~g-----~~~~p~wSPDG~~Laf~s~~ 251 (428)
T PRK01029 185 SLSITPTW-------MHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILAL-QG-----NQLMPTFSPRKKLLAFISDR 251 (428)
T ss_pred CCcccceE-------ccCCCceEEEEEEccCCCceEEEEECCCCCceEeecC-CC-----CccceEECCCCCEEEEEECC
Confidence 34555567 778864 2 2444444 577778887765443322 21 3346799999998883 3 2
Q ss_pred CC--e--EEEEEcCCCC-CcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEE--EcCC-ceeeEEeecc
Q 014125 193 NK--S--VRVFDVHRPG-RDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIY--REDN-MELLYVLHGQ 264 (430)
Q Consensus 193 d~--~--i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~--d~~~-~~~~~~~~~~ 264 (430)
+| . +..|++..+. .... .+ ...........+|+|++..++++...+|...+| ++.. +.....+..+
T Consensus 252 ~g~~di~~~~~~~~~g~~g~~~---~l---t~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~ 325 (428)
T PRK01029 252 YGNPDLFIQSFSLETGAIGKPR---RL---LNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKK 325 (428)
T ss_pred CCCcceeEEEeecccCCCCcce---Ee---ecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccC
Confidence 23 3 3446655421 1100 11 111122345679999666556555566755555 4432 2333444444
Q ss_pred ccCeEEEEEccCCCEEEEEecCC--CeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEcc---CCcEEEE
Q 014125 265 EGGVTHVQFSRDGNYLYTGGRKD--PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQ---DGLVHIY 339 (430)
Q Consensus 265 ~~~i~~~~~~~~~~~l~~~~~~d--~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~vw 339 (430)
...+....|+|||+.|+..+..+ ..|.+||+.++... .+. .....+....|+|||++|+.... ...|+++
T Consensus 326 ~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~--~Lt---~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~v 400 (428)
T PRK01029 326 YRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY--QLT---TSPENKESPSWAIDSLHLVYSAGNSNESELYLI 400 (428)
T ss_pred CCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE--Ecc---CCCCCccceEECCCCCEEEEEECCCCCceEEEE
Confidence 45678899999999998776233 47999999887543 221 11234567899999998775433 3468999
Q ss_pred EcCCCCeecccccccCCeeEEEEcCCC
Q 014125 340 DLQTGKWISGFQAAADTVNGFSFHPFL 366 (430)
Q Consensus 340 d~~~~~~~~~~~~~~~~v~~~~~~~~~ 366 (430)
|+.+++...... ..+.+...+|+|..
T Consensus 401 dl~~g~~~~Lt~-~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 401 SLITKKTRKIVI-GSGEKRFPSWGAFP 426 (428)
T ss_pred ECCCCCEEEeec-CCCcccCceecCCC
Confidence 998877544333 44567778888753
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.3e-12 Score=105.06 Aligned_cols=233 Identities=18% Similarity=0.179 Sum_probs=161.6
Q ss_pred CCCceEEEEeCCCcEEEEec-cCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCccccccc
Q 014125 136 PTSCVFASTTRDHPIHLWDA-TTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYST 213 (430)
Q Consensus 136 ~~~~~l~~~~~dg~i~vwd~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~ 213 (430)
|...-+++.+.|.++++|-- +.++.-..+.. ....++.++.+.++...|++| ..|++.-+.+...- .. ..
T Consensus 34 ~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~----~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedf---nk-m~ 105 (404)
T KOG1409|consen 34 PKEEGVISVSEDRTVRVWLKRDSGQYWPSIYH----YMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDF---NK-MT 105 (404)
T ss_pred cCCCCeEEccccceeeeEEeccccccCchhhh----hCCCCceEeeeeccceEEEEEEecceEEEEEhhhhh---hh-cc
Confidence 34556899999999999953 34443333222 123378899999999999988 78999888775421 11 12
Q ss_pred ccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEE
Q 014125 214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCW 293 (430)
Q Consensus 214 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~ 293 (430)
.......|...+..+.|+- ....+++.+.|..+.---.+.+..+..+. .....+++.+.-. +.+.+. ..|.|.+-
T Consensus 106 ~~r~~~~h~~~v~~~if~~-~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~-~~~~~t~~~~d~~--~~fvGd-~~gqvt~l 180 (404)
T KOG1409|consen 106 FLKDYLAHQARVSAIVFSL-THEWVLSTGKDKQFAWHCTESGNRLGGYN-FETPASALQFDAL--YAFVGD-HSGQITML 180 (404)
T ss_pred hhhhhhhhhcceeeEEecC-CceeEEEeccccceEEEeeccCCcccceE-eeccCCCCceeeE--EEEecc-cccceEEE
Confidence 2233467888999999988 66678888888776544444444332221 1112222222222 455555 67777766
Q ss_pred eCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCC-eecccccccCCeeEEEEcCCCcEEEEe
Q 014125 294 DLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGK-WISGFQAAADTVNGFSFHPFLPMAASS 372 (430)
Q Consensus 294 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~ 372 (430)
.+...... .+.+..+|...+.+++|.|..+.|++|..|..+.+||+.-.+ ....+.+|.+.|..+...+.-+.|+++
T Consensus 181 r~~~~~~~--~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~ 258 (404)
T KOG1409|consen 181 KLEQNGCQ--LITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISC 258 (404)
T ss_pred EEeecCCc--eEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeec
Confidence 65543222 334447899999999999999999999999999999997544 355778899999999998889999999
Q ss_pred eCCceeeecCC
Q 014125 373 SGHRRFPVDDF 383 (430)
Q Consensus 373 ~~d~~~~vw~~ 383 (430)
+.||.|-+|+-
T Consensus 259 ~edg~i~~w~m 269 (404)
T KOG1409|consen 259 GEDGGIVVWNM 269 (404)
T ss_pred cCCCeEEEEec
Confidence 99999999953
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.8e-12 Score=102.41 Aligned_cols=255 Identities=12% Similarity=0.149 Sum_probs=169.1
Q ss_pred CCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCc-----eeeeeecccc-------cccccceEEEEECCCC
Q 014125 118 EGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGL-----LRCTYRAYDA-------VDEITAAFSVAFNPTG 185 (430)
Q Consensus 118 ~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-----~~~~~~~~~~-------~~~~~~v~~~~~~~~~ 185 (430)
...-+.++.| ...|.+|++|..+|.|.++.-.... ....++.|.. ..-...|..+.|.+++
T Consensus 24 eadiis~vef-------~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~ 96 (433)
T KOG1354|consen 24 EADIISAVEF-------DHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDG 96 (433)
T ss_pred hhcceeeEEe-------ecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCC
Confidence 3456778887 6789999999999999999755432 2223333321 1123468889998876
Q ss_pred ---cEEEEEcCCeEEEEEcCCCCCcccc-----------c-----------------ccccCCCCCCCcceEEEEEcCCC
Q 014125 186 ---TKIFAGYNKSVRVFDVHRPGRDFEK-----------Y-----------------STLKGNKEGQAGIMSAIAFSPTH 234 (430)
Q Consensus 186 ---~~l~~~~d~~i~v~d~~~~~~~~~~-----------~-----------------~~~~~~~~~~~~~v~~~~~~~~~ 234 (430)
.+|+++.|.+|++|.+...+..... . ...+.....|...|.++.++.|
T Consensus 97 n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD- 175 (433)
T KOG1354|consen 97 NLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSD- 175 (433)
T ss_pred CccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCc-
Confidence 3555789999999998764432200 0 0011122467888999999984
Q ss_pred CceEEEecCCCeEEEEEcCCcee---eEEeecc-----ccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEE--E
Q 014125 235 TGMLAIGSYSQTSAIYREDNMEL---LYVLHGQ-----EGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVY--K 304 (430)
Q Consensus 235 ~~~l~~~~~dg~v~~~d~~~~~~---~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~--~ 304 (430)
...+++ ..|=.|.+|++.-... +..++.+ ..-|++..|+|..-.+++-++..|+|++-|++....... +
T Consensus 176 ~Et~lS-ADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsK 254 (433)
T KOG1354|consen 176 KETFLS-ADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSK 254 (433)
T ss_pred cceEee-ccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhh
Confidence 445554 4578899999864322 2222322 345889999997554444333899999999984321100 0
Q ss_pred eecc----------cCCccceEEEEEcCCCCEEEEEccCCcEEEEEc-CCCCeecccccccC------------Ce---e
Q 014125 305 LYRS----------SEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDL-QTGKWISGFQAAAD------------TV---N 358 (430)
Q Consensus 305 ~~~~----------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~-~~~~~~~~~~~~~~------------~v---~ 358 (430)
++.. ..-...|..+.|+++|+|+++-+. -+|++||+ ...+++.+++.|.. .| .
T Consensus 255 lfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKF 333 (433)
T KOG1354|consen 255 LFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKF 333 (433)
T ss_pred hhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhhee
Confidence 1100 112356788999999999998754 57999999 45677777766532 22 4
Q ss_pred EEEEcCCCcEEEEeeCCceeeecC
Q 014125 359 GFSFHPFLPMAASSSGHRRFPVDD 382 (430)
Q Consensus 359 ~~~~~~~~~~l~s~~~d~~~~vw~ 382 (430)
.++|+.++.+++||+....+++++
T Consensus 334 ec~~sg~~~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 334 ECSWSGNDSYVMTGSYNNVFRVFN 357 (433)
T ss_pred EEEEcCCcceEecccccceEEEec
Confidence 578999999999999999999987
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.2e-12 Score=114.71 Aligned_cols=205 Identities=19% Similarity=0.173 Sum_probs=133.9
Q ss_pred CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEc---CCeEEEEEcCCCCCcccccccccCCCCCCCc
Q 014125 148 HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGY---NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAG 223 (430)
Q Consensus 148 g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~---d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 223 (430)
..|.++|....... .+..+.. .+....|+|+|+.|+ +.. ...|++||+.++... .+ ..+..
T Consensus 170 ~~l~~~d~~g~~~~-~l~~~~~-----~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~-----~~----~~~~~ 234 (417)
T TIGR02800 170 YELQVADYDGANPQ-TITRSRE-----PILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE-----KV----ASFPG 234 (417)
T ss_pred ceEEEEcCCCCCCE-EeecCCC-----ceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE-----Ee----ecCCC
Confidence 35788887544433 3332222 577889999999998 332 257999998764211 11 12233
Q ss_pred ceEEEEEcCCCCceEEEecCCC--eEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCC--eEEEEeCCCCc
Q 014125 224 IMSAIAFSPTHTGMLAIGSYSQ--TSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDP--YILCWDLRKAV 299 (430)
Q Consensus 224 ~v~~~~~~~~~~~~l~~~~~dg--~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~--~i~i~d~~~~~ 299 (430)
.+.+++|+|++..++++.+.++ .|++||+.++... .+..+........|+|+|+.|+..+..++ .|+++|+.+..
T Consensus 235 ~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~ 313 (417)
T TIGR02800 235 MNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE 313 (417)
T ss_pred CccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 4567899996665666666554 5888898876543 33334455567899999998887663333 57788887654
Q ss_pred eEEEEeecccCCccceEEEEEcCCCCEEEEEccCC---cEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCC
Q 014125 300 QVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDG---LVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGH 375 (430)
Q Consensus 300 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 375 (430)
.. .+ ..+........|+|+|++|+.++.++ .|.+||+.++... .+... .......|+|++++|+..+.+
T Consensus 314 ~~--~l---~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~l~~~~~~ 385 (417)
T TIGR02800 314 VR--RL---TFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRMILYATTR 385 (417)
T ss_pred EE--Ee---ecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCEEEEEEeC
Confidence 22 22 12334566789999999999888775 7999999876543 22222 234567899999988887754
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.4e-10 Score=99.74 Aligned_cols=249 Identities=13% Similarity=0.102 Sum_probs=149.8
Q ss_pred ECcCCceEEEecC----------CCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCC
Q 014125 68 WSPDGSSFLTSSE----------DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT 137 (430)
Q Consensus 68 ~sp~~~~l~s~~~----------dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 137 (430)
+||||+.|+.+.. +..|.+||..+.+...++.... .+-..+.-.|...+++||
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~-----------------~p~~~~~~~~~~~~ls~d 115 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPE-----------------GPRFLVGTYPWMTSLTPD 115 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCC-----------------CchhhccCccceEEECCC
Confidence 9999998877655 6799999999886654443321 000000111223334889
Q ss_pred CceEEEEe-C-CCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccc-
Q 014125 138 SCVFASTT-R-DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTL- 214 (430)
Q Consensus 138 ~~~l~~~~-~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~- 214 (430)
|++|++.. . +..|.+.|+.+++.+..+..... ..-... ++..+++.+.||......+...+........+
T Consensus 116 gk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~------~~vy~t-~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf 188 (352)
T TIGR02658 116 NKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDC------YHIFPT-ANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVF 188 (352)
T ss_pred CCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCC------cEEEEe-cCCccEEEeecCceEEEEecCCCceEEeeeeee
Confidence 99998776 3 68899999999999988876432 112222 23333343445554444443332211000000
Q ss_pred cC-CCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCce-----eeEEeec-------cccCeEEEEEccCCCEEE
Q 014125 215 KG-NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME-----LLYVLHG-------QEGGVTHVQFSRDGNYLY 281 (430)
Q Consensus 215 ~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~-----~~~~~~~-------~~~~i~~~~~~~~~~~l~ 281 (430)
.. ...-...+ .|.+.++..+.+..+ |+|.+.|+.... ....+.. ..+.+.-++++|+++.++
T Consensus 189 ~~~~~~v~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~ly 263 (352)
T TIGR02658 189 HPEDEYLINHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIY 263 (352)
T ss_pred cCCccccccCC----ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEE
Confidence 00 00000111 345534556655555 999999965432 2222211 223445599999999988
Q ss_pred EEe-c--------CCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCC-EEEEEc-cCCcEEEEEcCCCCeeccc
Q 014125 282 TGG-R--------KDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGR-HLGTGG-QDGLVHIYDLQTGKWISGF 350 (430)
Q Consensus 282 ~~~-~--------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-~dg~i~vwd~~~~~~~~~~ 350 (430)
+.. . ..+.|.++|..+.+... .+. -...+..++++||++ +|++.. .++.|.++|+.+++.+..+
T Consensus 264 V~~~~~~~~thk~~~~~V~ViD~~t~kvi~-~i~----vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 264 LLADQRAKWTHKTASRFLFVVDAKTGKRLR-KIE----LGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred EEecCCccccccCCCCEEEEEECCCCeEEE-EEe----CCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 843 1 22589999998875443 321 234788899999999 777666 5788999999999998887
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.8e-11 Score=108.02 Aligned_cols=225 Identities=15% Similarity=0.101 Sum_probs=131.4
Q ss_pred CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcE--E-EEE-cC--CeEEEEEcCCCCCcccccccccCCCCCC
Q 014125 148 HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTK--I-FAG-YN--KSVRVFDVHRPGRDFEKYSTLKGNKEGQ 221 (430)
Q Consensus 148 g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l-~~~-~d--~~i~v~d~~~~~~~~~~~~~~~~~~~~~ 221 (430)
..|.+.|...+.... +..... ...+-.|+|||+. + +.+ .+ ..|.+.++..+.. ..+ ...
T Consensus 165 ~~l~~~d~dG~~~~~-lt~~~~-----~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~--~~l-------t~~ 229 (428)
T PRK01029 165 GELWSVDYDGQNLRP-LTQEHS-----LSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAG--KKI-------LAL 229 (428)
T ss_pred ceEEEEcCCCCCceE-cccCCC-----CcccceEccCCCceEEEEEEccCCCceEEEEECCCCCc--eEe-------ecC
Confidence 357777776554433 222221 4556799999974 3 244 33 4577777765322 111 111
Q ss_pred CcceEEEEEcCCCCceEEEecCCC----eEEEEEcCCc---eeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEE-
Q 014125 222 AGIMSAIAFSPTHTGMLAIGSYSQ----TSAIYREDNM---ELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCW- 293 (430)
Q Consensus 222 ~~~v~~~~~~~~~~~~l~~~~~dg----~v~~~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~- 293 (430)
.+......|+||+..++++...+| .+..|++..+ +.........+.....+|+|||+.|+..+..+|...+|
T Consensus 230 ~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~ 309 (428)
T PRK01029 230 QGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYI 309 (428)
T ss_pred CCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEE
Confidence 223456799997666665554433 3444676642 33333332233456789999999888776456655555
Q ss_pred -eCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccC---CcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEE
Q 014125 294 -DLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQD---GLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMA 369 (430)
Q Consensus 294 -d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 369 (430)
++.........+ ......+....|+|||+.|+..+.+ ..|++||+.+++...... ....+....|+|+|+.|
T Consensus 310 ~~~~~~g~~~~~l---t~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-~~~~~~~p~wSpDG~~L 385 (428)
T PRK01029 310 MQIDPEGQSPRLL---TKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT-SPENKESPSWAIDSLHL 385 (428)
T ss_pred EECcccccceEEe---ccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC-CCCCccceEECCCCCEE
Confidence 443221111122 1223455678999999988866543 369999999887643332 33456789999999988
Q ss_pred EEeeCCceeeecCCCccccccCCCcEEEEeeccccc
Q 014125 370 ASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYASM 405 (430)
Q Consensus 370 ~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~~ 405 (430)
+..+.+ .....|.+|++..++.
T Consensus 386 ~f~~~~--------------~g~~~L~~vdl~~g~~ 407 (428)
T PRK01029 386 VYSAGN--------------SNESELYLISLITKKT 407 (428)
T ss_pred EEEECC--------------CCCceEEEEECCCCCE
Confidence 765432 1245677777765543
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-11 Score=108.21 Aligned_cols=201 Identities=15% Similarity=0.215 Sum_probs=147.7
Q ss_pred CcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeec------cc-------cCccC
Q 014125 69 SPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWF------PH-------MSASD 135 (430)
Q Consensus 69 sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~------~~-------~~~~~ 135 (430)
.|-+.|+|....||.++||+...+++-.++..... ..+...+..|. |. ...-+
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~--------------~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s 67 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIAS--------------LSGTCTYTKWGLSADYSPMKWLSLEKAKKAS 67 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchh--------------ccCcceeEEEEEEeccchHHHHhHHHHhhcc
Confidence 34567999999999999999998766433322111 11222233331 10 00113
Q ss_pred CCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCcccccccc
Q 014125 136 PTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTL 214 (430)
Q Consensus 136 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~ 214 (430)
.+...++-|...|.|.+|++..++....+....+ .+.|.++.++.+-..|. ++.|+.+..|+.... ..
T Consensus 68 ~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h---~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~--------~~ 136 (541)
T KOG4547|consen 68 LDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKH---YGNVNEILDAQRLGCIYSVGADLKVVYILEKEK--------VI 136 (541)
T ss_pred CCceEEEeecCCccEEEEEecCCeEEEEEecCCC---CCcceeeecccccCceEecCCceeEEEEecccc--------ee
Confidence 4566788999999999999999998887775433 33888999988888888 569999999998762 22
Q ss_pred cCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccC-----CCEEEEEecCCCe
Q 014125 215 KGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRD-----GNYLYTGGRKDPY 289 (430)
Q Consensus 215 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~l~~~~~~d~~ 289 (430)
..........+.+++.+|| +..+++++ +.|++||+++++.+..|.+|.++|.+++|-.+ |.+++++...+..
T Consensus 137 ~~~~~~~~~~~~sl~is~D-~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~ 213 (541)
T KOG4547|consen 137 IRIWKEQKPLVSSLCISPD-GKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERG 213 (541)
T ss_pred eeeeccCCCccceEEEcCC-CCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccc
Confidence 2233455566899999995 66888776 88999999999999999999999999999877 7888877656777
Q ss_pred EEEEeCCC
Q 014125 290 ILCWDLRK 297 (430)
Q Consensus 290 i~i~d~~~ 297 (430)
+.+|-++.
T Consensus 214 i~~w~v~~ 221 (541)
T KOG4547|consen 214 ITVWVVEK 221 (541)
T ss_pred eeEEEEEc
Confidence 88887654
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.1e-11 Score=108.76 Aligned_cols=203 Identities=20% Similarity=0.155 Sum_probs=125.1
Q ss_pred cEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE-cC--CeEEEEEcCCCCCcccccccccCCCCCCCcc
Q 014125 149 PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YN--KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGI 224 (430)
Q Consensus 149 ~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d--~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 224 (430)
.+.++|....... .+..... .+.+..|+|||+.|+ ++ .+ ..|++||+..+... . +. .. .+.
T Consensus 199 ~l~i~d~dG~~~~-~l~~~~~-----~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~--~---lt-~~---~g~ 263 (448)
T PRK04792 199 QLMIADYDGYNEQ-MLLRSPE-----PLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE--K---VT-SF---PGI 263 (448)
T ss_pred EEEEEeCCCCCce-EeecCCC-----cccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE--E---ec-CC---CCC
Confidence 5666776554432 2222222 677899999999888 44 23 35888888663221 1 11 11 122
Q ss_pred eEEEEEcCCCCceEEEecCCCe--EEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCC--eEEEEeCCCCce
Q 014125 225 MSAIAFSPTHTGMLAIGSYSQT--SAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDP--YILCWDLRKAVQ 300 (430)
Q Consensus 225 v~~~~~~~~~~~~l~~~~~dg~--v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~--~i~i~d~~~~~~ 300 (430)
.....|+|++..++++.+.+|. |+++|+.+++.. .+..+.......+|+|||+.|+..+..++ .|+++|+.++..
T Consensus 264 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~ 342 (448)
T PRK04792 264 NGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV 342 (448)
T ss_pred cCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 3467999976666666666775 777888876644 34445556678899999998887763444 466667766543
Q ss_pred EEEEeecccCCccceEEEEEcCCCCEEEEEccC-C--cEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeC
Q 014125 301 VVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQD-G--LVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSG 374 (430)
Q Consensus 301 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 374 (430)
. .+. ..+ ......+|+|+|++|+..+.+ + .|.++|+.+++... +... .......|+|+|+.|+..+.
T Consensus 343 ~--~Lt-~~g--~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~ 412 (448)
T PRK04792 343 S--RLT-FEG--EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTT 412 (448)
T ss_pred E--EEe-cCC--CCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEe
Confidence 2 221 111 223356899999998776553 3 46667888776532 2211 12234589999998877664
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.1e-10 Score=107.06 Aligned_cols=203 Identities=16% Similarity=0.130 Sum_probs=129.2
Q ss_pred cEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEc-C--CeEEEEEcCCCCCcccccccccCCCCCCCcc
Q 014125 149 PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGY-N--KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGI 224 (430)
Q Consensus 149 ~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~-d--~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 224 (430)
.|.++|...+.... +..+.. .+....|+|+|+.|+ ++. + ..|.+|++..+... .+ ....+.
T Consensus 180 ~l~~~d~~g~~~~~-l~~~~~-----~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~-----~l----~~~~g~ 244 (430)
T PRK00178 180 TLQRSDYDGARAVT-LLQSRE-----PILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRRE-----QI----TNFEGL 244 (430)
T ss_pred EEEEECCCCCCceE-EecCCC-----ceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEE-----Ec----cCCCCC
Confidence 47777876554333 322222 678899999999887 442 2 46889998764221 11 111223
Q ss_pred eEEEEEcCCCCceEEEecCCC--eEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCC--eEEEEeCCCCce
Q 014125 225 MSAIAFSPTHTGMLAIGSYSQ--TSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDP--YILCWDLRKAVQ 300 (430)
Q Consensus 225 v~~~~~~~~~~~~l~~~~~dg--~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~--~i~i~d~~~~~~ 300 (430)
.....|+|++..++++...+| .|+++|+.+++.. .+..+........|+|+|+.|+..+..+| .|+++|+.++..
T Consensus 245 ~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~ 323 (430)
T PRK00178 245 NGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA 323 (430)
T ss_pred cCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 456899996665555665555 5888899877654 34445555677899999998877663444 577778776643
Q ss_pred EEEEeecccCCccceEEEEEcCCCCEEEEEccC-C--cEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeC
Q 014125 301 VVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQD-G--LVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSG 374 (430)
Q Consensus 301 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 374 (430)
.. +.. .. .......|+|+|++|+..+.+ + .|.++|+.+++... +. +........|+|+|++++.++.
T Consensus 324 ~~--lt~-~~--~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt-~~~~~~~p~~spdg~~i~~~~~ 393 (430)
T PRK00178 324 ER--VTF-VG--NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LT-DTSLDESPSVAPNGTMLIYATR 393 (430)
T ss_pred EE--eec-CC--CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-cc-CCCCCCCceECCCCCEEEEEEe
Confidence 22 111 11 223457899999998876643 3 48899998876532 22 1222345689999998887764
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.5e-10 Score=99.68 Aligned_cols=280 Identities=15% Similarity=0.223 Sum_probs=180.8
Q ss_pred ceeEEEECcCCceEEEecCCC---------------eEEEEeCCCCCCcccccccccccccC---------cccc-----
Q 014125 62 FLKGIKWSPDGSSFLTSSEDK---------------TLRIFSLPENGISYDVNACSLAKDQD---------SYEA----- 112 (430)
Q Consensus 62 ~v~~~~~sp~~~~l~s~~~dg---------------~v~iw~~~~~~~~~~~~~~~~~~~~~---------~~~~----- 112 (430)
.|..+.|||.++||.|-+..+ .+.+||..++.++............. .+..
T Consensus 73 ~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~ 152 (561)
T COG5354 73 DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGS 152 (561)
T ss_pred CceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccC
Confidence 488999999999999977644 38999999988766543322110000 0000
Q ss_pred eeeec--------------CCCeeeeeeeccccCccCCCCceEEE-----EeCCCcEEEEeccCCceeeeeecccccccc
Q 014125 113 SLVVT--------------EGESVYDFCWFPHMSASDPTSCVFAS-----TTRDHPIHLWDATTGLLRCTYRAYDAVDEI 173 (430)
Q Consensus 113 ~~~~~--------------~~~~v~~~~~~~~~~~~~~~~~~l~~-----~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 173 (430)
.+.++ ....+....|+|. .++..|+. ....+.+++|.+..+..+.+-.....
T Consensus 153 sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~-----~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~---- 223 (561)
T COG5354 153 SLYIHEITDNIEEHPFKNLRPVGILDFSISPE-----GNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKV---- 223 (561)
T ss_pred eEEEEecCCccccCchhhccccceeeEEecCC-----CCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEee----
Confidence 00000 1134555666553 12333443 35678899999887766655443332
Q ss_pred cceEEEEECCCCcEEEEE------------cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEE-
Q 014125 174 TAAFSVAFNPTGTKIFAG------------YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAI- 240 (430)
Q Consensus 174 ~~v~~~~~~~~~~~l~~~------------~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~- 240 (430)
.-..+.|++.|+++++- ....+.++++.... +... ....++|...+|.|.+.++.++
T Consensus 224 -~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~--------i~V~-~~~~~pVhdf~W~p~S~~F~vi~ 293 (561)
T COG5354 224 -SGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS--------IPVE-KDLKDPVHDFTWEPLSSRFAVIS 293 (561)
T ss_pred -cccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc--------ccee-ccccccceeeeecccCCceeEEe
Confidence 23468899999887631 12567888886421 1111 1346789999999966555444
Q ss_pred ecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCC---CeEEEEeCCCCceEEEEeecccCCccceEE
Q 014125 241 GSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKD---PYILCWDLRKAVQVVYKLYRSSEHTNQRIL 317 (430)
Q Consensus 241 ~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~ 317 (430)
|-....+.++|++.. ....+ ....=+.+.|+|.+++++.++ -| |.+.+||..........+ .......
T Consensus 294 g~~pa~~s~~~lr~N-l~~~~--Pe~~rNT~~fsp~~r~il~ag-F~nl~gni~i~~~~~rf~~~~~~-----~~~n~s~ 364 (561)
T COG5354 294 GYMPASVSVFDLRGN-LRFYF--PEQKRNTIFFSPHERYILFAG-FDNLQGNIEIFDPAGRFKVAGAF-----NGLNTSY 364 (561)
T ss_pred cccccceeecccccc-eEEec--CCcccccccccCcccEEEEec-CCccccceEEeccCCceEEEEEe-----ecCCceE
Confidence 357889999999865 33333 345557789999999999977 44 689999988765444232 1223456
Q ss_pred EEEcCCCCEEEEEc------cCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCce
Q 014125 318 FDIEPSGRHLGTGG------QDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRR 377 (430)
Q Consensus 318 ~~~~~~~~~l~~~~------~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~ 377 (430)
+.|+|++.++.+.. .|+.|.|||+...+.. ..+.+.|.|.+++..+.+.+..
T Consensus 365 ~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f--------el~~~~W~p~~~~~ttsSs~~~ 422 (561)
T COG5354 365 CDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF--------ELTNITWDPSGQYVTTSSSCPK 422 (561)
T ss_pred eeccCCceEEEecCCCcccccCcceEEEEecCchhh--------hhhhccccCCcccceeeccCCC
Confidence 78999999987764 3788999998744322 5567889999988888877653
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.2e-12 Score=113.58 Aligned_cols=296 Identities=16% Similarity=0.196 Sum_probs=187.4
Q ss_pred ceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecccc
Q 014125 52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (430)
Q Consensus 52 ~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (430)
.+..+.||...|+.++--.+.+-+++++.|++|++|.++...-......++ .....|..+|.++.|..
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQ----------fTY~aHkk~i~~igfL~-- 794 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQ----------FTYQAHKKPIHDIGFLA-- 794 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceee----------eEhhhccCcccceeeee--
Confidence 456789999999999877777889999999999999997543222222222 23345778899888833
Q ss_pred CccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE--EcCCeEEEEEcCCCCCccc
Q 014125 132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA--GYNKSVRVFDVHRPGRDFE 209 (430)
Q Consensus 132 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~d~~i~v~d~~~~~~~~~ 209 (430)
+.+.++ +.||-|.+||.--++..............+.|.++.- -+...+++ +...+|+++|.+..+...+
T Consensus 795 -----~lr~i~--ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~n-v~~~iliAgcsaeSTVKl~DaRsce~~~E 866 (1034)
T KOG4190|consen 795 -----DLRSIA--SCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLEN-VDRHILIAGCSAESTVKLFDARSCEWTCE 866 (1034)
T ss_pred -----ccceee--eccCcceeecccccchhHhhhcCcccCCCceeEeccc-Ccchheeeeccchhhheeeecccccceee
Confidence 444454 4588899999887776654433222222223444331 12333333 4789999999887543221
Q ss_pred ccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCe
Q 014125 210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPY 289 (430)
Q Consensus 210 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~ 289 (430)
.. .....+....+++++..+ .++.++++-.+|.|.+.|.++|+.+......+.....++ .|..+.|+.+. .|.+
T Consensus 867 ~k---Vcna~~Pna~~R~iaVa~-~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~sa-ldHs 940 (1034)
T KOG4190|consen 867 LK---VCNAPGPNALTRAIAVAD-KGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSA-LDHS 940 (1034)
T ss_pred EE---eccCCCCchheeEEEecc-CcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhc-ccce
Confidence 11 111234556789999999 788999999999999999999998888776666666665 46677788777 8999
Q ss_pred EEE-EeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCC----Ceecccc--cccCCeeEEEE
Q 014125 290 ILC-WDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTG----KWISGFQ--AAADTVNGFSF 362 (430)
Q Consensus 290 i~i-~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~----~~~~~~~--~~~~~v~~~~~ 362 (430)
+.+ |-.-.+... ... .....+..-+ ..-|..|+++...+.+.||.-... ..+..++ ...+..++++-
T Consensus 941 laVnWhaldgimh-~q~---kpppepahfl--qsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~ 1014 (1034)
T KOG4190|consen 941 LAVNWHALDGIMH-LQD---KPPPEPAHFL--QSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAP 1014 (1034)
T ss_pred eEeeehhcCCeee-ecc---CCCCcchhhh--hccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeee
Confidence 988 876554221 111 1111111101 112667888877778888853210 1111121 23456788888
Q ss_pred cCCCcEEEEeeCCceee
Q 014125 363 HPFLPMAASSSGHRRFP 379 (430)
Q Consensus 363 ~~~~~~l~s~~~d~~~~ 379 (430)
-|-..-+..|...|.+.
T Consensus 1015 LPLN~afLaGne~G~Ia 1031 (1034)
T KOG4190|consen 1015 LPLNCAFLAGNEHGAIA 1031 (1034)
T ss_pred ccccchhhccCCCCcee
Confidence 88766666666555544
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.7e-12 Score=114.08 Aligned_cols=297 Identities=16% Similarity=0.227 Sum_probs=188.0
Q ss_pred CCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCC--eeeeeeeccccCccCCC
Q 014125 60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGE--SVYDFCWFPHMSASDPT 137 (430)
Q Consensus 60 ~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~ 137 (430)
.+++.++..+|.|+-+|.++.-| +.+-|++.. +.+...++|.. .|-.+.|+|+ |.
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p-----------------~~ppr~l~h~tpw~vad~qws~h-----~a 80 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDP-----------------FTPPRWLHHITPWQVADVQWSPH-----PA 80 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCC-----------------CCCceeeeccCcchhcceecccC-----CC
Confidence 45688999999999999999876 456677643 22223333332 3677888874 44
Q ss_pred CceEEEEeCCCcEEEEeccCCce-eeeeecccccccccceEEEEECCCCcEEE--EEcCCeEEEEEcCCCCCcccccccc
Q 014125 138 SCVFASTTRDHPIHLWDATTGLL-RCTYRAYDAVDEITAAFSVAFNPTGTKIF--AGYNKSVRVFDVHRPGRDFEKYSTL 214 (430)
Q Consensus 138 ~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~~~d~~i~v~d~~~~~~~~~~~~~~ 214 (430)
..+-++......-.+|++..... ...+-.| +|...|+.+.|+|+..-+. ++.|..+..||++.+..+.....
T Consensus 81 ~~~wiVsts~qkaiiwnlA~ss~~aIef~lh---ghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~-- 155 (1081)
T KOG0309|consen 81 KPYWIVSTSNQKAIIWNLAKSSSNAIEFVLH---GHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTS-- 155 (1081)
T ss_pred CceeEEecCcchhhhhhhhcCCccceEEEEe---cCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeee--
Confidence 55566666666678888754321 1122222 2334899999999986655 45899999999998655443221
Q ss_pred cCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCc-eeeEEeeccccCeEEEEEccC-CCEEEEEecCCCeEEE
Q 014125 215 KGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-ELLYVLHGQEGGVTHVQFSRD-GNYLYTGGRKDPYILC 292 (430)
Q Consensus 215 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~-~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~~d~~i~i 292 (430)
.....-+.++|+..+++.+| .+....|.+||++.+ .++..+++|...|+.+.|..- ...+++++ .|++|+.
T Consensus 156 -----~w~s~asqVkwnyk~p~vla-sshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~-~d~tvkf 228 (1081)
T KOG0309|consen 156 -----SWRSAASQVKWNYKDPNVLA-SSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSS-NDGTVKF 228 (1081)
T ss_pred -----cccccCceeeecccCcchhh-hccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccC-CCCceee
Confidence 22234577899885555544 556778999999876 567788889899999999764 33566677 9999999
Q ss_pred EeCCCCceEEEEeecccCCccceEEEEEcCCCC--EEEEEccCCcEEEEEcC---------C-CCeecccccccCCeeEE
Q 014125 293 WDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGR--HLGTGGQDGLVHIYDLQ---------T-GKWISGFQAAADTVNGF 360 (430)
Q Consensus 293 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~vwd~~---------~-~~~~~~~~~~~~~v~~~ 360 (430)
||........... .....+++.-.+-|-|. ++.---.++.+.+++-+ + .+++..|.||.+.|..+
T Consensus 229 w~y~kSt~e~~~~---vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eF 305 (1081)
T KOG0309|consen 229 WDYSKSTTESKRT---VTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEF 305 (1081)
T ss_pred eccccccccccee---ccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHH
Confidence 9998764433222 23445666677777553 22222222234444332 2 46788999999999988
Q ss_pred EEcCCCcEEEEeeCCceeeecCCCccccccCCCcEEEEeec
Q 014125 361 SFHPFLPMAASSSGHRRFPVDDFEDLHLSGDENCVSVWSFL 401 (430)
Q Consensus 361 ~~~~~~~~l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~ 401 (430)
.|...+.-. .|... ..-+|+|-+.|..+|+|-+.
T Consensus 306 lWR~r~e~~----~d~d~---rdfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 306 LWRKRKECD----GDYDS---RDFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred hhhhccccc----CCCCc---cceeEEEeecCCceEeeecc
Confidence 887543310 00000 11135555666677777654
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.5e-11 Score=112.89 Aligned_cols=201 Identities=15% Similarity=0.206 Sum_probs=149.9
Q ss_pred CCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCc
Q 014125 60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC 139 (430)
Q Consensus 60 ~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (430)
.+.|....+.-+.+.++.++.+..+.+||............... ...++.+ ...++++.-
T Consensus 87 s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er----------------~~l~~~~----~~g~s~~~~ 146 (967)
T KOG0974|consen 87 SDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDER----------------CTLYSSL----IIGDSAEEL 146 (967)
T ss_pred cccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCce----------------EEEEeEE----EEeccCcEE
Confidence 44455556666677888888899999999987655433332210 1111111 112266778
Q ss_pred eEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCcccccccccCCC
Q 014125 140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNK 218 (430)
Q Consensus 140 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~ 218 (430)
++++|+.-+.|.+|+.........+.+|.+ .|.++.|+.+|.+++ ++.|.++++|++++... .....
T Consensus 147 ~i~~gsv~~~iivW~~~~dn~p~~l~GHeG-----~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~-------~~~~~ 214 (967)
T KOG0974|consen 147 YIASGSVFGEIIVWKPHEDNKPIRLKGHEG-----SIFSIVTSLDGRYIASVSDDRSIRLWPIDSREV-------LGCTG 214 (967)
T ss_pred EEEeccccccEEEEeccccCCcceecccCC-----ceEEEEEccCCcEEEEEecCcceeeeecccccc-------cCccc
Confidence 999999999999999874433333455444 999999999999999 67999999999987532 22345
Q ss_pred CCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccc-cCeEEEEEccCCCEEEEEecCCCeEEEEeCCC
Q 014125 219 EGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE-GGVTHVQFSRDGNYLYTGGRKDPYILCWDLRK 297 (430)
Q Consensus 219 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~ 297 (430)
.+|+..+..+.|.| . .+++++.|.+.++|+.. +..+..+..|. ..|..++..++...+++++ .|+.+++||+..
T Consensus 215 fgHsaRvw~~~~~~-n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g-~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 215 FGHSARVWACCFLP-N--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGG-NDSTLKLWDLNG 289 (967)
T ss_pred ccccceeEEEEecc-c--eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeec-cCcchhhhhhhc
Confidence 78999999999998 4 89999999999999765 44455777776 4799999999888889998 999999999764
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.1e-09 Score=109.27 Aligned_cols=248 Identities=12% Similarity=0.095 Sum_probs=157.2
Q ss_pred cCC-CCceEEEEeCCCcEEEEeccCCceeeeeecccc---------cccccceEEEEECCCCcEEEE-E-cCCeEEEEEc
Q 014125 134 SDP-TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDA---------VDEITAAFSVAFNPTGTKIFA-G-YNKSVRVFDV 201 (430)
Q Consensus 134 ~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~---------~~~~~~v~~~~~~~~~~~l~~-~-~d~~i~v~d~ 201 (430)
+++ ++.++++-+.++.|+++|.. +..+..+..... .........+++++++..|++ . .++.|+++|+
T Consensus 575 vd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~ 653 (1057)
T PLN02919 575 IDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREIDF 653 (1057)
T ss_pred EECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEec
Confidence 354 45677777788899999975 444433332110 011124578999998876654 3 4578999987
Q ss_pred CCCCCccccccc---ccCCCCC-------CCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeec--------
Q 014125 202 HRPGRDFEKYST---LKGNKEG-------QAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG-------- 263 (430)
Q Consensus 202 ~~~~~~~~~~~~---~~~~~~~-------~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~-------- 263 (430)
..... ..+.. ......+ .-.....++++|+++.++++...++.|++||..++... .+.+
T Consensus 654 ~~~~V--~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~ 730 (1057)
T PLN02919 654 VNETV--RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLN 730 (1057)
T ss_pred CCCEE--EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCC
Confidence 65211 00000 0000000 01234689999977778888888999999998776542 1111
Q ss_pred -------cccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEe---------eccc--------CCccceEEEE
Q 014125 264 -------QEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKL---------YRSS--------EHTNQRILFD 319 (430)
Q Consensus 264 -------~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~---------~~~~--------~~~~~v~~~~ 319 (430)
.-.....|+++|+++.|+++...++.|++||+.++......- .... ..-.....++
T Consensus 731 g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gva 810 (1057)
T PLN02919 731 GSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVL 810 (1057)
T ss_pred CCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceee
Confidence 012356799999999777777578999999998754321110 0000 0112345789
Q ss_pred EcCCCCEEEEEccCCcEEEEEcCCCCeecccc-------------cccCCeeEEEEcCCCcEEEEeeCCceeeecCCCc
Q 014125 320 IEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQ-------------AAADTVNGFSFHPFLPMAASSSGHRRFPVDDFED 385 (430)
Q Consensus 320 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-------------~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~ 385 (430)
++++|.++++-..+++|++||..++....... +.-....+++++++|+++++-+.++.|++|+...
T Consensus 811 vd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~ 889 (1057)
T PLN02919 811 CAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNK 889 (1057)
T ss_pred EeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence 99999988888899999999998776542211 1122567899999999888888777777776543
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.2e-11 Score=110.88 Aligned_cols=237 Identities=14% Similarity=0.193 Sum_probs=162.6
Q ss_pred cceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCC--c-E
Q 014125 111 EASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG--T-K 187 (430)
Q Consensus 111 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~-~ 187 (430)
...+.+.-.+++.++.. +|.|+-++.++.-| +.+.|+...-....+-.|... -.+-.+.|+|.. . .
T Consensus 16 ~kslsl~v~~~~~a~si-------~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tp---w~vad~qws~h~a~~~w 84 (1081)
T KOG0309|consen 16 GKSLSLKVDGGFNAVSI-------NPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITP---WQVADVQWSPHPAKPYW 84 (1081)
T ss_pred CceeEEEecCcccceee-------ccccchhhhhhhcC-eEEEeccCCCCCceeeeccCc---chhcceecccCCCCcee
Confidence 33444444556666666 67788899998888 667777653222111111111 145567777764 2 3
Q ss_pred EEEEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCce-eeEEeecccc
Q 014125 188 IFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME-LLYVLHGQEG 266 (430)
Q Consensus 188 l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~-~~~~~~~~~~ 266 (430)
++......-.+|++..... ..+...+.+|...++.+.|+|.....+++++.|..+..||+++.. ++..+..-..
T Consensus 85 iVsts~qkaiiwnlA~ss~-----~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s 159 (1081)
T KOG0309|consen 85 IVSTSNQKAIIWNLAKSSS-----NAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRS 159 (1081)
T ss_pred EEecCcchhhhhhhhcCCc-----cceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccc
Confidence 4444566677888876433 223334578899999999999999999999999999999999864 5555555556
Q ss_pred CeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCC-CCEEEEEccCCcEEEEEcCCCC
Q 014125 267 GVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPS-GRHLGTGGQDGLVHIYDLQTGK 345 (430)
Q Consensus 267 ~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~ 345 (430)
....++|+-....+++.+ ..+.|++||++.+..+...+ .+|...++.++|..- ...+.+.+.||+|++||.....
T Consensus 160 ~asqVkwnyk~p~vlass-hg~~i~vwd~r~gs~pl~s~---K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt 235 (1081)
T KOG0309|consen 160 AASQVKWNYKDPNVLASS-HGNDIFVWDLRKGSTPLCSL---KGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKST 235 (1081)
T ss_pred cCceeeecccCcchhhhc-cCCceEEEeccCCCcceEEe---cccceeeehHHHhhhhhhhhcccCCCCceeeecccccc
Confidence 678899987666666666 78899999999987776555 457888888888653 2457888999999999987543
Q ss_pred ee-cccccccCCeeEEEEcCCCc
Q 014125 346 WI-SGFQAAADTVNGFSFHPFLP 367 (430)
Q Consensus 346 ~~-~~~~~~~~~v~~~~~~~~~~ 367 (430)
.. ........+|..-.+.|-|.
T Consensus 236 ~e~~~~vtt~~piw~~r~~Pfg~ 258 (1081)
T KOG0309|consen 236 TESKRTVTTNFPIWRGRYLPFGE 258 (1081)
T ss_pred cccceeccccCcceeccccccCc
Confidence 22 12222345677777777655
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.5e-10 Score=98.55 Aligned_cols=256 Identities=13% Similarity=0.191 Sum_probs=158.1
Q ss_pred eEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEE
Q 014125 64 KGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFAS 143 (430)
Q Consensus 64 ~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 143 (430)
++..|++|..+.|-- ..+.+.+|++.+.+. ....-+...|..+.++| .|....+|+
T Consensus 129 W~~qfs~dEsl~arl-v~nev~f~~~~~f~~------------------~~~kl~~~~i~~f~lSp-----gp~~~~vAv 184 (566)
T KOG2315|consen 129 WVPQFSIDESLAARL-VSNEVQFYDLGSFKT------------------IQHKLSVSGITMLSLSP-----GPEPPFVAV 184 (566)
T ss_pred cccccccchhhhhhh-hcceEEEEecCCccc------------------eeeeeeccceeeEEecC-----CCCCceEEE
Confidence 578888876544322 245799999875211 11112345777777766 344445553
Q ss_pred -----EeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE--EE--cC---------CeEEEEEcCCCC
Q 014125 144 -----TTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF--AG--YN---------KSVRVFDVHRPG 205 (430)
Q Consensus 144 -----~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~~--~d---------~~i~v~d~~~~~ 205 (430)
.+.-+.+++|...............-.. . .=..+.|++-|.-|+ ++ -| .+++++++....
T Consensus 185 yvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFk-a-dkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s 262 (566)
T KOG2315|consen 185 YVPEKKGAPASVRIYKYPEEGQHQPVANKSFFK-A-DKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGES 262 (566)
T ss_pred EccCCCCCCcEEEEeccccccccchhhhccccc-c-ceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCce
Confidence 3556689999887332211111100000 0 223678888775443 32 23 367777776211
Q ss_pred CcccccccccCCCCCCCcceEEEEEcCCCCceEEE-ecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEe
Q 014125 206 RDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAI-GSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGG 284 (430)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~-~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 284 (430)
. ... -...++|.++.|+|.+..+.++ |-.-..+.+||++ +.++..+. +++-+++-|+|.|++|+.+|
T Consensus 263 ~----~V~-----L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~fnp~g~ii~lAG 330 (566)
T KOG2315|consen 263 V----SVP-----LLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNPHGNIILLAG 330 (566)
T ss_pred E----EEe-----cCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC--CCCccceEECCCCCEEEEee
Confidence 1 011 1235789999999955444333 5567889999997 56666554 67789999999999999888
Q ss_pred c--CCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEcc------CCcEEEEEcCCCCeecccccccCC
Q 014125 285 R--KDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQ------DGLVHIYDLQTGKWISGFQAAADT 356 (430)
Q Consensus 285 ~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~~~~ 356 (430)
. -.|.+-+||+.+.+.+. .. .-..-+-+.|+|||+++++++. |+.++||+.. |..+....-. ..
T Consensus 331 FGNL~G~mEvwDv~n~K~i~-~~-----~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt-G~~l~~~~f~-sE 402 (566)
T KOG2315|consen 331 FGNLPGDMEVWDVPNRKLIA-KF-----KAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT-GSLLHEKMFK-SE 402 (566)
T ss_pred cCCCCCceEEEeccchhhcc-cc-----ccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec-Cceeehhhhh-Hh
Confidence 3 23789999998854332 21 2233456899999999998875 6889999987 5554433211 15
Q ss_pred eeEEEEcCC
Q 014125 357 VNGFSFHPF 365 (430)
Q Consensus 357 v~~~~~~~~ 365 (430)
...+.|-|.
T Consensus 403 L~qv~W~P~ 411 (566)
T KOG2315|consen 403 LLQVEWRPF 411 (566)
T ss_pred Hhheeeeec
Confidence 677778764
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.8e-12 Score=121.88 Aligned_cols=194 Identities=16% Similarity=0.250 Sum_probs=145.1
Q ss_pred CeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEE
Q 014125 120 ESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRV 198 (430)
Q Consensus 120 ~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v 198 (430)
..|.++.- +|...+.++|+.||.+++|....++.+..++.... ..|+.+.|+.+|..+..+ .||.+.+
T Consensus 2209 ~~v~r~~s-------Hp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~----s~vtr~~f~~qGnk~~i~d~dg~l~l 2277 (2439)
T KOG1064|consen 2209 ENVRRMTS-------HPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN----SRVTRSRFNHQGNKFGIVDGDGDLSL 2277 (2439)
T ss_pred CceeeecC-------CCCCceEEecCCCceEEEEeccCCCeEEEeeccCc----chhhhhhhcccCCceeeeccCCceee
Confidence 44555554 45566899999999999999999988888776543 378899999999888755 8999999
Q ss_pred EEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEec---CCCeEEEEEcCCc-eeeEEeeccccCeEEEEEc
Q 014125 199 FDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS---YSQTSAIYREDNM-ELLYVLHGQEGGVTHVQFS 274 (430)
Q Consensus 199 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~v~~~d~~~~-~~~~~~~~~~~~i~~~~~~ 274 (430)
|.+.. ..-.....|....+.+.|-. ..+++++ .++.+.+||..-. .....-..|.+.++++++.
T Consensus 2278 ~q~~p---------k~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~ 2345 (2439)
T KOG1064|consen 2278 WQASP---------KPYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYA 2345 (2439)
T ss_pred cccCC---------cceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEc
Confidence 99862 11112256666677777754 3566543 4688999995432 1111226799999999999
Q ss_pred cCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccc
Q 014125 275 RDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQ 351 (430)
Q Consensus 275 ~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 351 (430)
|..+.|++|| .+|.|++||++..+.. |.-.. ++ ...++++|+..|.++||++.....+..++
T Consensus 2346 P~~qllisgg-r~G~v~l~D~rqrql~---------h~~~~----~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2346 PKHQLLISGG-RKGEVCLFDIRQRQLR---------HTFQA----LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred CcceEEEecC-CcCcEEEeehHHHHHH---------HHhhh----hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence 9999999999 9999999999875321 11111 44 56799999999999999999888877776
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.8e-09 Score=97.87 Aligned_cols=295 Identities=16% Similarity=0.242 Sum_probs=188.4
Q ss_pred cceeecccCCCceeEEEECcCC------------ceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecC
Q 014125 51 NQFRTSSIPNNFLKGIKWSPDG------------SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTE 118 (430)
Q Consensus 51 ~~~~~~~~h~~~v~~~~~sp~~------------~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (430)
+.+.+...|...|+.+.|.|-. -.||++...|.|.+||+..+... ....++
T Consensus 46 q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~-----------------~~l~~~ 108 (1062)
T KOG1912|consen 46 QLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVI-----------------NWLSHS 108 (1062)
T ss_pred hhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhh-----------------hhhcCC
Confidence 4566788899999999998731 25777888899999999765332 223345
Q ss_pred CCeeeeeeeccccCccCCCC-ceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCC-cEEE-EEcCCe
Q 014125 119 GESVYDFCWFPHMSASDPTS-CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG-TKIF-AGYNKS 195 (430)
Q Consensus 119 ~~~v~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~-~~~d~~ 195 (430)
..++.+++|.|. -++. ..|+.-....++.+|+..+|+.......... ...|+.+.|-. +.+. .|..|.
T Consensus 109 ~~~~qdl~W~~~----rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~-----iLs~f~~DPfd~rh~~~l~s~g~ 179 (1062)
T KOG1912|consen 109 NDSVQDLCWVPA----RDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHE-----ILSCFRVDPFDSRHFCVLGSKGF 179 (1062)
T ss_pred Ccchhheeeeec----cCcchheeEEecCCcEEEEEEccCCceeeccccCCc-----ceeeeeeCCCCcceEEEEccCce
Confidence 578999999885 3344 5677777888999999999998877665543 55668887743 4444 556666
Q ss_pred EEEEEcCCCCCc---ccccccccC--C----------CCCCC------c---ceEEEEEcCCCCceEEEecCCCeEEEEE
Q 014125 196 VRVFDVHRPGRD---FEKYSTLKG--N----------KEGQA------G---IMSAIAFSPTHTGMLAIGSYSQTSAIYR 251 (430)
Q Consensus 196 i~v~d~~~~~~~---~~~~~~~~~--~----------~~~~~------~---~v~~~~~~~~~~~~l~~~~~dg~v~~~d 251 (430)
+.+.+.-...++ .+.+..... . ...+. . ....++|+|.-.+.++ ......+.++|
T Consensus 180 vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lf-i~~prellv~d 258 (1062)
T KOG1912|consen 180 VLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILF-ITFPRELLVFD 258 (1062)
T ss_pred EEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEE-EEeccceEEEc
Confidence 666654321111 110000000 0 00000 0 1223567884444444 44567799999
Q ss_pred cCCceeeEEeeccccCeEEEEEccCCC--EEEEEecCCCeEEEEeCCCC----------------ce--EEEE-------
Q 014125 252 EDNMELLYVLHGQEGGVTHVQFSRDGN--YLYTGGRKDPYILCWDLRKA----------------VQ--VVYK------- 304 (430)
Q Consensus 252 ~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~~d~~i~i~d~~~~----------------~~--~~~~------- 304 (430)
++-..++....-..+.+.-+.+-|+++ .|++.. .||.+.+|-.+.. .+ .+..
T Consensus 259 le~~~~l~vvpier~~akfv~vlP~~~rd~LfclH-~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~ 337 (1062)
T KOG1912|consen 259 LEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLH-SNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPV 337 (1062)
T ss_pred chhhceeEEEEeccCCcceeEeccCCCcceEEEEe-cCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccc
Confidence 988888777766667777777777654 688888 8999988854320 00 0000
Q ss_pred --------------------------------------------------------------eecccCCccceEEEEEcC
Q 014125 305 --------------------------------------------------------------LYRSSEHTNQRILFDIEP 322 (430)
Q Consensus 305 --------------------------------------------------------------~~~~~~~~~~v~~~~~~~ 322 (430)
+....+|....++....|
T Consensus 338 ~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p 417 (1062)
T KOG1912|consen 338 IGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRP 417 (1062)
T ss_pred eeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeeccc
Confidence 000012223333332222
Q ss_pred -----------CC-------CEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEee
Q 014125 323 -----------SG-------RHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSS 373 (430)
Q Consensus 323 -----------~~-------~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 373 (430)
.| .++|.|...|+|.++|+.++.....+..|...|.++.|.....++-.+.
T Consensus 418 ~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsy 486 (1062)
T KOG1912|consen 418 MPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSY 486 (1062)
T ss_pred CcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeee
Confidence 11 3678999999999999999999999999999999999987766554443
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.6e-09 Score=94.14 Aligned_cols=263 Identities=11% Similarity=0.025 Sum_probs=152.7
Q ss_pred CCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcE
Q 014125 71 DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPI 150 (430)
Q Consensus 71 ~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i 150 (430)
.+..+++++.+|.|.-+|..+++..-...... .+. -.| ..++..++.++.+|.+
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~------------------~~~---~~p-----~v~~~~v~v~~~~g~l 117 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDE------------------RLS---GGV-----GADGGLVFVGTEKGEV 117 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCC------------------Ccc---cce-----EEcCCEEEEEcCCCEE
Confidence 36688888999999999988875432221110 000 001 1245678888899999
Q ss_pred EEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccC-CCCCCCcceEEEE
Q 014125 151 HLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKG-NKEGQAGIMSAIA 229 (430)
Q Consensus 151 ~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~ 229 (430)
..+|..+|+.+....... .+.+.....++..++...++.|..||..++...++....... ..... .+..
T Consensus 118 ~ald~~tG~~~W~~~~~~------~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~----~sp~ 187 (377)
T TIGR03300 118 IALDAEDGKELWRAKLSS------EVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGS----ASPV 187 (377)
T ss_pred EEEECCCCcEeeeeccCc------eeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCC----CCCE
Confidence 999999999887665432 121111112445555568899999999876543322110000 00000 1111
Q ss_pred EcCCCCceEEEecCCCeEEEEEcCCceeeEEeecccc----C---eEEEEEcc--CCCEEEEEecCCCeEEEEeCCCCce
Q 014125 230 FSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEG----G---VTHVQFSR--DGNYLYTGGRKDPYILCWDLRKAVQ 300 (430)
Q Consensus 230 ~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~----~---i~~~~~~~--~~~~l~~~~~~d~~i~i~d~~~~~~ 300 (430)
.. + ..++.+..++.+..+|.++++.+........ . ...+.-+| .+..+++++ .+|.++.||..+++.
T Consensus 188 ~~--~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~-~~g~l~a~d~~tG~~ 263 (377)
T TIGR03300 188 IA--D-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVS-YQGRVAALDLRSGRV 263 (377)
T ss_pred EE--C-CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEE-cCCEEEEEECCCCcE
Confidence 11 2 3677888899999999999887654331100 0 00011111 355778887 899999999998854
Q ss_pred EEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccC-CeeEEEEcCCCcEEEEeeCCceee
Q 014125 301 VVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAAD-TVNGFSFHPFLPMAASSSGHRRFP 379 (430)
Q Consensus 301 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~s~~~d~~~~ 379 (430)
..... .. ...... ..+..++.++.+|.++.+|..+++.+........ ....... .+..|++++.+|.+.
T Consensus 264 ~W~~~-----~~-~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~ 333 (377)
T TIGR03300 264 LWKRD-----AS-SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLH 333 (377)
T ss_pred EEeec-----cC-CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEE
Confidence 43221 11 111122 2466788888999999999999988765532211 1222222 355777777666666
Q ss_pred ecCC
Q 014125 380 VDDF 383 (430)
Q Consensus 380 vw~~ 383 (430)
+++.
T Consensus 334 ~~d~ 337 (377)
T TIGR03300 334 WLSR 337 (377)
T ss_pred EEEC
Confidence 6543
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.3e-08 Score=84.92 Aligned_cols=186 Identities=14% Similarity=0.142 Sum_probs=128.8
Q ss_pred CCCcEEEEEcCCeEEEEEcCCCCCcccccc-ccc-C-CCCCCCcceEEEE-EcCCCCceEEEecCCCeEEEEEcCCceee
Q 014125 183 PTGTKIFAGYNKSVRVFDVHRPGRDFEKYS-TLK-G-NKEGQAGIMSAIA-FSPTHTGMLAIGSYSQTSAIYREDNMELL 258 (430)
Q Consensus 183 ~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~-~~~-~-~~~~~~~~v~~~~-~~~~~~~~l~~~~~dg~v~~~d~~~~~~~ 258 (430)
.||+.|+-...|.|.+||..+.......+. .+. . .......+..-+. |++-++.+++..+. |...+.+...+-.+
T Consensus 276 sDGkrIvFq~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~~i 354 (668)
T COG4946 276 SDGKRIVFQNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGYSI 354 (668)
T ss_pred CCCcEEEEecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCCeeE
Confidence 368888888889999999876432211111 010 0 0000011111122 44545667777764 66666665544433
Q ss_pred EEeeccccCeEEEEEccCCCEEEEEecCCC-eEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEE
Q 014125 259 YVLHGQEGGVTHVQFSRDGNYLYTGGRKDP-YILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVH 337 (430)
Q Consensus 259 ~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 337 (430)
+. ++.+.|.-..+..+++-++.+. .|| .+-+||.+++... .+ ...-+.|.++..+|+|++++.+.....+.
T Consensus 355 qv--~~~~~VrY~r~~~~~e~~vigt-~dgD~l~iyd~~~~e~k--r~---e~~lg~I~av~vs~dGK~~vvaNdr~el~ 426 (668)
T COG4946 355 QV--GKKGGVRYRRIQVDPEGDVIGT-NDGDKLGIYDKDGGEVK--RI---EKDLGNIEAVKVSPDGKKVVVANDRFELW 426 (668)
T ss_pred Ec--CCCCceEEEEEccCCcceEEec-cCCceEEEEecCCceEE--Ee---eCCccceEEEEEcCCCcEEEEEcCceEEE
Confidence 32 4677788888888888888888 787 9999999987422 22 45667899999999999999999999999
Q ss_pred EEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCce
Q 014125 338 IYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRR 377 (430)
Q Consensus 338 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~ 377 (430)
+.|+++++....-+...+-|+.+.|||+++++|-+--+|.
T Consensus 427 vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy 466 (668)
T COG4946 427 VIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGY 466 (668)
T ss_pred EEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcce
Confidence 9999999876655666778999999999999998865543
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.6e-11 Score=120.13 Aligned_cols=194 Identities=18% Similarity=0.298 Sum_probs=145.1
Q ss_pred ecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCcc
Q 014125 55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS 134 (430)
Q Consensus 55 ~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 134 (430)
....|-..|.++.=+|...+.+||+.||.|++|....++.+ ..........|..+.|
T Consensus 2203 ~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v----------------~~~rt~g~s~vtr~~f------- 2259 (2439)
T KOG1064|consen 2203 MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQV----------------VCFRTAGNSRVTRSRF------- 2259 (2439)
T ss_pred EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeE----------------EEeeccCcchhhhhhh-------
Confidence 44556677888988998899999999999999988755322 1122222256777777
Q ss_pred CCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE---cCCeEEEEEcCCCCCcccc
Q 014125 135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG---YNKSVRVFDVHRPGRDFEK 210 (430)
Q Consensus 135 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~---~d~~i~v~d~~~~~~~~~~ 210 (430)
+.+|+.+..+..||.+.+|... .++....+.|+. ....+.|-. ..++ +| .++.+.+||...+....
T Consensus 2260 ~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk-----~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s-- 2329 (2439)
T KOG1064|consen 2260 NHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNK-----ALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNS-- 2329 (2439)
T ss_pred cccCCceeeeccCCceeecccC-CcceeccccCCc-----cccceeeee--hhhhccccCCCCCcccchhcccCcccc--
Confidence 6789999999999999999987 444444555443 566677755 4444 33 57899999986643321
Q ss_pred cccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeE
Q 014125 211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYI 290 (430)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i 290 (430)
+. ...|.+.++++++-| ...+|++|+.+|.|++||++..+..+.++. +. ...++++++ ..|.+
T Consensus 2330 ---~v--~~~H~~gaT~l~~~P-~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~s-s~g~i 2392 (2439)
T KOG1064|consen 2330 ---LV--HTCHDGGATVLAYAP-KHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGS-SEGNI 2392 (2439)
T ss_pred ---ee--eeecCCCceEEEEcC-cceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccC-cccce
Confidence 11 167888999999999 788999999999999999998877766653 44 556788888 99999
Q ss_pred EEEeCCCC
Q 014125 291 LCWDLRKA 298 (430)
Q Consensus 291 ~i~d~~~~ 298 (430)
+||++...
T Consensus 2393 kIw~~s~~ 2400 (2439)
T KOG1064|consen 2393 KIWRLSEF 2400 (2439)
T ss_pred EEEEcccc
Confidence 99999876
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.6e-09 Score=100.81 Aligned_cols=289 Identities=14% Similarity=0.214 Sum_probs=179.6
Q ss_pred CCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCC
Q 014125 59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS 138 (430)
Q Consensus 59 h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 138 (430)
..+.|.++.|-++...|+.+..+|.|.+...+... ..........-...|.+++| |||+
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~--------------~~~~~E~VG~vd~GI~a~~W-------SPD~ 132 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDP--------------DEDEIEIVGSVDSGILAASW-------SPDE 132 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCC--------------CCceeEEEEEEcCcEEEEEE-------CCCc
Confidence 45679999999999999999999999998332100 01112223334468999999 8899
Q ss_pred ceEEEEeCCCcEEEEecc---------------C--------Cceeeeeecccccc-------------------cccce
Q 014125 139 CVFASTTRDHPIHLWDAT---------------T--------GLLRCTYRAYDAVD-------------------EITAA 176 (430)
Q Consensus 139 ~~l~~~~~dg~i~vwd~~---------------~--------~~~~~~~~~~~~~~-------------------~~~~v 176 (430)
.+|+..+.++++.+..-. . |+...+|.+..+.. ....-
T Consensus 133 Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~ 212 (928)
T PF04762_consen 133 ELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGR 212 (928)
T ss_pred CEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCc
Confidence 999999999988775421 0 11111121111110 11134
Q ss_pred EEEEECCCCcEEEEE-c---C---CeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecC---CCe
Q 014125 177 FSVAFNPTGTKIFAG-Y---N---KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY---SQT 246 (430)
Q Consensus 177 ~~~~~~~~~~~l~~~-~---d---~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~ 246 (430)
..++|-.||.+++++ . . ..++||+-+. .+....+.-.+--.+++|.| .++++|+... ...
T Consensus 213 ~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG---------~L~stSE~v~gLe~~l~WrP-sG~lIA~~q~~~~~~~ 282 (928)
T PF04762_consen 213 VRISWRGDGEYFAVSSVEPETGSRRVIRVYSREG---------ELQSTSEPVDGLEGALSWRP-SGNLIASSQRLPDRHD 282 (928)
T ss_pred eEEEECCCCcEEEEEEEEcCCCceeEEEEECCCc---------eEEeccccCCCccCCccCCC-CCCEEEEEEEcCCCcE
Confidence 578999999999954 2 2 5789998652 11111122233345789999 7778888764 345
Q ss_pred EEEEEcCCceeeEE----eeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcC
Q 014125 247 SAIYREDNMELLYV----LHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEP 322 (430)
Q Consensus 247 v~~~d~~~~~~~~~----~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 322 (430)
|.+|.-+ |-.... +......|..+.|++++..|++.. .|. |.+|-..+..-..+..... .....+..+.|+|
T Consensus 283 VvFfErN-GLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~-~~~-vqLWt~~NYHWYLKqei~~-~~~~~~~~~~Wdp 358 (928)
T PF04762_consen 283 VVFFERN-GLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWL-EDR-VQLWTRSNYHWYLKQEIRF-SSSESVNFVKWDP 358 (928)
T ss_pred EEEEecC-CcEeeeEecCCCCCCceeeEEEECCCCCEEEEEe-cCC-ceEEEeeCCEEEEEEEEEc-cCCCCCCceEECC
Confidence 6666543 332222 223456899999999999999976 454 9999988764333322221 2233344599999
Q ss_pred CC-CEEEEEccCCcEEEEEcC----CC----------------Ceec--ccc-------------cccCCeeEEEEcCCC
Q 014125 323 SG-RHLGTGGQDGLVHIYDLQ----TG----------------KWIS--GFQ-------------AAADTVNGFSFHPFL 366 (430)
Q Consensus 323 ~~-~~l~~~~~dg~i~vwd~~----~~----------------~~~~--~~~-------------~~~~~v~~~~~~~~~ 366 (430)
.. ..|...+.+|.+..++.. .+ ..+. .|+ ....+|.+++|++++
T Consensus 359 e~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~ 438 (928)
T PF04762_consen 359 EKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSN 438 (928)
T ss_pred CCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCC
Confidence 64 346666665666554431 11 1100 010 134679999999999
Q ss_pred cEEEEeeCCceeeecC
Q 014125 367 PMAASSSGHRRFPVDD 382 (430)
Q Consensus 367 ~~l~s~~~d~~~~vw~ 382 (430)
..+++-..||.+.+|.
T Consensus 439 ~~~avl~~d~~l~~~~ 454 (928)
T PF04762_consen 439 SRFAVLTSDGSLSIYE 454 (928)
T ss_pred CeEEEEECCCCEEEEE
Confidence 8899999888888874
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.8e-09 Score=103.39 Aligned_cols=268 Identities=13% Similarity=0.113 Sum_probs=155.4
Q ss_pred eEEEECcC-CceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeee-eeeeccccCccCCCCceE
Q 014125 64 KGIKWSPD-GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVY-DFCWFPHMSASDPTSCVF 141 (430)
Q Consensus 64 ~~~~~sp~-~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~l 141 (430)
..++++++ ++.+++-+.++.|++||...... ....... ..... .+... +.-..|...+++++++.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i-~~ig~~g----~~G~~-------dG~~~~a~f~~P~GIavd~~gn~L 638 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFI-VQIGSTG----EEGLR-------DGSFEDATFNRPQGLAYNAKKNLL 638 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEE-EEEccCC----CcCCC-------CCchhccccCCCcEEEEeCCCCEE
Confidence 46788874 66777777788999999864321 1110000 00000 00000 001123344447777766
Q ss_pred EEEe-CCCcEEEEeccCCceeeeeeccccc------------ccccceEEEEECCCC-cEEEEE-cCCeEEEEEcCCCCC
Q 014125 142 ASTT-RDHPIHLWDATTGLLRCTYRAYDAV------------DEITAAFSVAFNPTG-TKIFAG-YNKSVRVFDVHRPGR 206 (430)
Q Consensus 142 ~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~------------~~~~~v~~~~~~~~~-~~l~~~-~d~~i~v~d~~~~~~ 206 (430)
+++. ..+.|+++|+.++.. .++...... ........++++|++ .++++. .++.|++||...+..
T Consensus 639 YVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v 717 (1057)
T PLN02919 639 YVADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVT 717 (1057)
T ss_pred EEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeE
Confidence 6554 457799999877653 333211000 001234689999954 444443 678999999865321
Q ss_pred cccc----cccccCC--CCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeec-----------------
Q 014125 207 DFEK----YSTLKGN--KEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG----------------- 263 (430)
Q Consensus 207 ~~~~----~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~----------------- 263 (430)
.... ....... ....-.....++++|++..++++-+.++.|++||+.++.......+
T Consensus 718 ~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~ 797 (1057)
T PLN02919 718 RVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGV 797 (1057)
T ss_pred EEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCc
Confidence 0000 0000000 0011134677999996666778888889999999987653211100
Q ss_pred ----cccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecc----------cCCccceEEEEEcCCCCEEEE
Q 014125 264 ----QEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRS----------SEHTNQRILFDIEPSGRHLGT 329 (430)
Q Consensus 264 ----~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~----------~~~~~~v~~~~~~~~~~~l~~ 329 (430)
.-.....++++++|..+++-. .++.|++||..++.... ..... ...-.....++++++|+.+++
T Consensus 798 g~~~~l~~P~Gvavd~dG~LYVADs-~N~rIrviD~~tg~v~t-iaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVa 875 (1057)
T PLN02919 798 GSEVLLQHPLGVLCAKDGQIYVADS-YNHKIKKLDPATKRVTT-LAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVA 875 (1057)
T ss_pred hhhhhccCCceeeEeCCCcEEEEEC-CCCEEEEEECCCCeEEE-EeccCCcCCCCCcccccccCCceEEEEeCCCCEEEE
Confidence 011246899999998666665 89999999998763221 11110 112235678999999999888
Q ss_pred EccCCcEEEEEcCCCCe
Q 014125 330 GGQDGLVHIYDLQTGKW 346 (430)
Q Consensus 330 ~~~dg~i~vwd~~~~~~ 346 (430)
-+.++.|++||+.+++.
T Consensus 876 Dt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 876 DTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ECCCCEEEEEECCCCcc
Confidence 88999999999998765
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.28 E-value=5e-09 Score=94.43 Aligned_cols=266 Identities=14% Similarity=0.115 Sum_probs=149.8
Q ss_pred CCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcE
Q 014125 71 DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPI 150 (430)
Q Consensus 71 ~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i 150 (430)
++..++.++.+|.+..+|..+++..-.... ...+.+ .| .-.+..++.++.+|.+
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~------------------~~~~~~---~p-----~v~~~~v~v~~~~g~l 157 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKL------------------SSEVLS---PP-----LVANGLVVVRTNDGRL 157 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeecc------------------Cceeec---CC-----EEECCEEEEECCCCeE
Confidence 355677788888999999887754322111 011110 01 0024467778889999
Q ss_pred EEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccCCCCCCCcc---e-E
Q 014125 151 HLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGI---M-S 226 (430)
Q Consensus 151 ~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~---v-~ 226 (430)
..||..+|+.+..+.............+.... ++..+++..++.+..+|..++...+........ ....... + .
T Consensus 158 ~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~-g~~~~~~~~~~~~ 235 (377)
T TIGR03300 158 TALDAATGERLWTYSRVTPALTLRGSASPVIA-DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPK-GRTELERLVDVDG 235 (377)
T ss_pred EEEEcCCCceeeEEccCCCceeecCCCCCEEE-CCEEEEECCCCEEEEEEccCCCEeeeeccccCC-CCCchhhhhccCC
Confidence 99999999987776543321000000111111 343333457789999998775433221100000 0000000 0 0
Q ss_pred EEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEee
Q 014125 227 AIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLY 306 (430)
Q Consensus 227 ~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~ 306 (430)
...+ .+..+++++.+|.++.||..+++.+..... ....... ..+..+++++ .+|.+..+|..++.......
T Consensus 236 ~p~~---~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~--~~~~~p~--~~~~~vyv~~-~~G~l~~~d~~tG~~~W~~~- 306 (377)
T TIGR03300 236 DPVV---DGGQVYAVSYQGRVAALDLRSGRVLWKRDA--SSYQGPA--VDDNRLYVTD-ADGVVVALDRRSGSELWKND- 306 (377)
T ss_pred ccEE---ECCEEEEEEcCCEEEEEECCCCcEEEeecc--CCccCce--EeCCEEEEEC-CCCeEEEEECCCCcEEEccc-
Confidence 1112 123677788899999999999987766542 1122222 2466788887 89999999998885443221
Q ss_pred cccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCee-EEEEcCCCcEEEEeeCCceee
Q 014125 307 RSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVN-GFSFHPFLPMAASSSGHRRFP 379 (430)
Q Consensus 307 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~s~~~d~~~~ 379 (430)
... ......... .+..|++++.+|.|+++|..+++.+..++.+...+. ...+. ++ .|+.++.||.+.
T Consensus 307 ~~~--~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~~-~l~v~~~dG~l~ 374 (377)
T TIGR03300 307 ELK--YRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-GD-GLLVQTRDGDLY 374 (377)
T ss_pred ccc--CCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-CC-EEEEEeCCceEE
Confidence 101 111111122 367889999999999999999999988876654332 22222 23 466666555543
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.9e-08 Score=86.30 Aligned_cols=174 Identities=16% Similarity=0.178 Sum_probs=124.7
Q ss_pred ECc-CCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeC
Q 014125 68 WSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTR 146 (430)
Q Consensus 68 ~sp-~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 146 (430)
|++ +|.+++..|. |..-|.+...+ ..+.+.+...|.-..+ ..+++-++.|..
T Consensus 327 fa~~~Gd~ia~VSR-GkaFi~~~~~~-------------------~~iqv~~~~~VrY~r~-------~~~~e~~vigt~ 379 (668)
T COG4946 327 FAVVNGDYIALVSR-GKAFIMRPWDG-------------------YSIQVGKKGGVRYRRI-------QVDPEGDVIGTN 379 (668)
T ss_pred hccCCCcEEEEEec-CcEEEECCCCC-------------------eeEEcCCCCceEEEEE-------ccCCcceEEecc
Confidence 444 5788888876 45555544322 2244555566776666 556678999999
Q ss_pred CC-cEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccccccccCCCCCCCcc
Q 014125 147 DH-PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGI 224 (430)
Q Consensus 147 dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 224 (430)
|| .+-++|..+++......... .|.++..+++|++++++ ....|.+.|++++.... .-....+-
T Consensus 380 dgD~l~iyd~~~~e~kr~e~~lg------~I~av~vs~dGK~~vvaNdr~el~vididngnv~~--------idkS~~~l 445 (668)
T COG4946 380 DGDKLGIYDKDGGEVKRIEKDLG------NIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRL--------IDKSEYGL 445 (668)
T ss_pred CCceEEEEecCCceEEEeeCCcc------ceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeE--------ecccccce
Confidence 99 89999999987665544333 78899999999999877 56789999998854321 11334467
Q ss_pred eEEEEEcCCCCceEEEecCCC----eEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEe
Q 014125 225 MSAIAFSPTHTGMLAIGSYSQ----TSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGG 284 (430)
Q Consensus 225 v~~~~~~~~~~~~l~~~~~dg----~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 284 (430)
|+.+.|+| +++++|-+-.+| .|++||+..++...... ..+.=.+-+|.|++++|+--+
T Consensus 446 Itdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 446 ITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred eEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCeEEEecC-CcccccCcccCCCCcEEEEEe
Confidence 99999999 777888887765 58999999887665443 333446778999999887665
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.4e-08 Score=84.13 Aligned_cols=219 Identities=16% Similarity=0.126 Sum_probs=141.9
Q ss_pred CCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEEC-CCCcEEEEEcCCeEEEEEcCCCCCccccccccc
Q 014125 137 TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFN-PTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLK 215 (430)
Q Consensus 137 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~ 215 (430)
++.++++--..+.|..|+..+++... +... ....+++. +++.++++.. +.+.++|..+.. ...+....
T Consensus 11 ~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~-------~~~G~~~~~~~g~l~v~~~-~~~~~~d~~~g~--~~~~~~~~ 79 (246)
T PF08450_consen 11 DGRLYWVDIPGGRIYRVDPDTGEVEV-IDLP-------GPNGMAFDRPDGRLYVADS-GGIAVVDPDTGK--VTVLADLP 79 (246)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEEE-EESS-------SEEEEEEECTTSEEEEEET-TCEEEEETTTTE--EEEEEEEE
T ss_pred CCEEEEEEcCCCEEEEEECCCCeEEE-EecC-------CCceEEEEccCCEEEEEEc-CceEEEecCCCc--EEEEeecc
Confidence 56777777778999999998876543 2221 25577777 6766655554 555666876631 11111110
Q ss_pred CCCCCCCcceEEEEEcCCCCceEEEecCC--------CeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCC
Q 014125 216 GNKEGQAGIMSAIAFSPTHTGMLAIGSYS--------QTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKD 287 (430)
Q Consensus 216 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------g~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d 287 (430)
. ........+.+++.| +++++++.... |.|..++.. ++...... .-...+.|+|+|+++.|+++....
T Consensus 80 ~-~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~ 155 (246)
T PF08450_consen 80 D-GGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFN 155 (246)
T ss_dssp T-TCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTT
T ss_pred C-CCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeeccccc
Confidence 0 111345688999999 55566665433 568888877 55443333 345678999999999888776688
Q ss_pred CeEEEEeCCCCce-E--EEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEc-
Q 014125 288 PYILCWDLRKAVQ-V--VYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFH- 363 (430)
Q Consensus 288 ~~i~i~d~~~~~~-~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~- 363 (430)
+.|..|++..... . ...+..........-.++++.+|++.++....+.|.+++.+ |+.+..+......+++++|.
T Consensus 156 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg 234 (246)
T PF08450_consen 156 GRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGG 234 (246)
T ss_dssp TEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEES
T ss_pred ceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEEC
Confidence 9999999864332 1 11122222223457789999999988887788999999988 98888887665689999994
Q ss_pred CCCcEEEE
Q 014125 364 PFLPMAAS 371 (430)
Q Consensus 364 ~~~~~l~s 371 (430)
++.+.|..
T Consensus 235 ~~~~~L~v 242 (246)
T PF08450_consen 235 PDGKTLYV 242 (246)
T ss_dssp TTSSEEEE
T ss_pred CCCCEEEE
Confidence 66554443
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=99.27 E-value=9e-09 Score=82.89 Aligned_cols=251 Identities=14% Similarity=0.202 Sum_probs=137.5
Q ss_pred EEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEe
Q 014125 66 IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTT 145 (430)
Q Consensus 66 ~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 145 (430)
++.+++|+.||.-- |..|.|=...+.-.. -...+. +.......-+.++| |||+.+||.+.
T Consensus 3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~s-i~~kcq-----------VpkD~~PQWRkl~W-------SpD~tlLa~a~ 62 (282)
T PF15492_consen 3 LALSSDGKLLAILQ-DQCIEIRSAKDDFSS-IIGKCQ-----------VPKDPNPQWRKLAW-------SPDCTLLAYAE 62 (282)
T ss_pred eeecCCCcEEEEEe-ccEEEEEeccCCchh-eeEEEe-----------cCCCCCchheEEEE-------CCCCcEEEEEc
Confidence 56788998888644 556766554432100 000000 11111124567889 88999999999
Q ss_pred CCCcEEEEeccCCceeeeeeccc-cc-ccccceEEEEECCCC-------cEEEEEcCCeEEEEEcCCC-CCccccccccc
Q 014125 146 RDHPIHLWDATTGLLRCTYRAYD-AV-DEITAAFSVAFNPTG-------TKIFAGYNKSVRVFDVHRP-GRDFEKYSTLK 215 (430)
Q Consensus 146 ~dg~i~vwd~~~~~~~~~~~~~~-~~-~~~~~v~~~~~~~~~-------~~l~~~~d~~i~v~d~~~~-~~~~~~~~~~~ 215 (430)
..|+|+++|+..... ..+.... .. .-...|..+.|.+-. ++|+...+|.++-|-+..+ .........+.
T Consensus 63 S~G~i~vfdl~g~~l-f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfs 141 (282)
T PF15492_consen 63 STGTIRVFDLMGSEL-FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFS 141 (282)
T ss_pred CCCeEEEEeccccee-EEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEE
Confidence 999999999976433 3333221 11 112356677775532 5666788888888877431 11111111111
Q ss_pred CCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEE--EEEecCCCe----
Q 014125 216 GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYL--YTGGRKDPY---- 289 (430)
Q Consensus 216 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l--~~~~~~d~~---- 289 (430)
. .......|.++.++| +.++|++|+.... .++. -.+....+++=..-.+..+. ++.. .|+.
T Consensus 142 f-~~~yp~Gi~~~vy~p-~h~LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Pyyk~v~~~-~~~~~~~~ 208 (282)
T PF15492_consen 142 F-SSHYPHGINSAVYHP-KHRLLLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPYYKQVTSS-EDDITASS 208 (282)
T ss_pred e-cccCCCceeEEEEcC-CCCEEEEeccCCC------CCcc----ccccccCceEEEEcCCCCcEEEcccc-Cccccccc
Confidence 0 123356799999999 5556666654322 0000 00112223332222121111 1111 1211
Q ss_pred --EEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccccccc
Q 014125 290 --ILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAA 354 (430)
Q Consensus 290 --i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 354 (430)
..+|.+-+.. ...........|..+..||||..||+...+|.|.+|++.+-++...+..++
T Consensus 209 ~~~~~~~~~~~~----~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~e 271 (282)
T PF15492_consen 209 KRRGLLRIPSFK----FFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQDE 271 (282)
T ss_pred cccceeecccee----eeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchhh
Confidence 1233322210 111113456789999999999999999999999999999888777666444
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.2e-09 Score=82.24 Aligned_cols=245 Identities=13% Similarity=0.089 Sum_probs=152.7
Q ss_pred eEEEECc-----CCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCC
Q 014125 64 KGIKWSP-----DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS 138 (430)
Q Consensus 64 ~~~~~sp-----~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 138 (430)
+.+.|.| ...+||.||..|...+|...+.+........ +...| ...... -...
T Consensus 71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~----------------snn~v---~~~~r~---cd~~ 128 (344)
T KOG4532|consen 71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDV----------------SNNDV---TLVKRY---CDLK 128 (344)
T ss_pred ecccccchHhhccccEEEeccccceeeeecccCcccceeeecc----------------cccch---hhhhhh---cccc
Confidence 4566766 2348999999999999998865432211110 00111 000000 0011
Q ss_pred ceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCcccccccccCC
Q 014125 139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGN 217 (430)
Q Consensus 139 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~ 217 (430)
..+..++.|.++++.+++.+......-.... .+.++++++++++++ +|....|..|.++..+...... .
T Consensus 129 ~~~~i~sndht~k~~~~~~~s~~~~~h~~~~-----~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~-----~ 198 (344)
T KOG4532|consen 129 FPLNIASNDHTGKTMVVSGDSNKFAVHNQNL-----TQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENI-----Y 198 (344)
T ss_pred cceeeccCCcceeEEEEecCcccceeecccc-----ceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeee-----E
Confidence 2466778888888888876544333222211 477999999999999 6788999999998755433221 1
Q ss_pred CCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceee-----EEeeccccCeEEEEEccCCC--EEEEEecCCCeE
Q 014125 218 KEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELL-----YVLHGQEGGVTHVQFSRDGN--YLYTGGRKDPYI 290 (430)
Q Consensus 218 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~-----~~~~~~~~~i~~~~~~~~~~--~l~~~~~~d~~i 290 (430)
.......-.+..|+. ....+|++..||++.|||++..... ..-..|.+.+..+.|++.|. +|+.+- .-+.+
T Consensus 199 ~a~t~D~gF~~S~s~-~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sE-hfs~~ 276 (344)
T KOG4532|consen 199 EAPTSDHGFYNSFSE-NDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISE-HFSRV 276 (344)
T ss_pred ecccCCCceeeeecc-CcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEec-CcceE
Confidence 122233446778888 6679999999999999999875432 22235889999999998664 344444 67899
Q ss_pred EEEeCCCCceEEEEeecc---cCC-ccceEEEEEcCCCCEEEEEccCCcEEEEEcCC
Q 014125 291 LCWDLRKAVQVVYKLYRS---SEH-TNQRILFDIEPSGRHLGTGGQDGLVHIYDLQT 343 (430)
Q Consensus 291 ~i~d~~~~~~~~~~~~~~---~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 343 (430)
.+.|+++........... ..| ...+....|+.++..+.+.+++ .+.=|++.+
T Consensus 277 hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~s 332 (344)
T KOG4532|consen 277 HVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILS 332 (344)
T ss_pred EEEEcccCceeeEEecCccccccccccccccccccCCCcccccccch-hhheeeccc
Confidence 999999886543332111 112 2336667777777666666554 244555543
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.1e-09 Score=86.34 Aligned_cols=252 Identities=17% Similarity=0.170 Sum_probs=155.9
Q ss_pred ceeEEEECc---CCc-eEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCC
Q 014125 62 FLKGIKWSP---DGS-SFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT 137 (430)
Q Consensus 62 ~v~~~~~sp---~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 137 (430)
.+..+.|.- +|. .|+-+-.+|.|.++..........+.... ...+.. ..-.++.| ++.
T Consensus 71 ~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls----------~~ki~~-~~~lslD~-------~~~ 132 (339)
T KOG0280|consen 71 TEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLS----------SKKISV-VEALSLDI-------STS 132 (339)
T ss_pred ccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccc----------hhhhhh-eeeeEEEe-------ecc
Confidence 355566643 444 45566667788887665332111111100 000000 02345556 667
Q ss_pred CceEEEEeCCCcEEEEeccCCceee--eeecccccccccceEEEEECCCCcEEE-E-EcCCeEEEEEcCCCCCccccccc
Q 014125 138 SCVFASTTRDHPIHLWDATTGLLRC--TYRAYDAVDEITAAFSVAFNPTGTKIF-A-GYNKSVRVFDVHRPGRDFEKYST 213 (430)
Q Consensus 138 ~~~l~~~~~dg~i~vwd~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~-~-~~d~~i~v~d~~~~~~~~~~~~~ 213 (430)
+..++++..+|.+.+-+........ .++.|.. +++...|+....-++ + |.|+.+..||++.++. -
T Consensus 133 ~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~-----E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~------~ 201 (339)
T KOG0280|consen 133 GTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEF-----EAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT------F 201 (339)
T ss_pred CceEEEEcCCCcEEEEecceeeeeecccccccce-----eeeeeecccCCCceEEecCCCceEEEEEecCCcc------e
Confidence 7789999999999966655543333 5666554 888888887665444 5 4899999999985432 1
Q ss_pred ccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCC-ceeeEEeeccccCeEEEEEccCCC-EEEEEecCCCeEE
Q 014125 214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN-MELLYVLHGQEGGVTHVQFSRDGN-YLYTGGRKDPYIL 291 (430)
Q Consensus 214 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~d~~i~ 291 (430)
+......|...|.++.-+|..+..+++|+.|-.|++||.+. ++++..-. -.+.|..+.++|.-. .+++++ +-.-.+
T Consensus 202 i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~C-Mh~G~k 279 (339)
T KOG0280|consen 202 IWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAAC-MHNGAK 279 (339)
T ss_pred eeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHH-HhcCce
Confidence 22223567788999999998899999999999999999995 45655444 458899999999643 334444 555567
Q ss_pred EEeCCCCceE-EEEeecccCCccceEEEEEcCCCCEEEEEc-cCCcEE-EEEcCCC
Q 014125 292 CWDLRKAVQV-VYKLYRSSEHTNQRILFDIEPSGRHLGTGG-QDGLVH-IYDLQTG 344 (430)
Q Consensus 292 i~d~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~-vwd~~~~ 344 (430)
|-+....... ...+.....|.+-...-.|......|++++ .|+.++ +|-.-++
T Consensus 280 i~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 280 ILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred EEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 7776654332 112233355666666666644445677754 455544 6644443
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.4e-08 Score=89.00 Aligned_cols=207 Identities=11% Similarity=0.063 Sum_probs=122.8
Q ss_pred eeeeeeeccccCccCCCCce-EEEEeC---CCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-E-c--
Q 014125 121 SVYDFCWFPHMSASDPTSCV-FASTTR---DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-G-Y-- 192 (430)
Q Consensus 121 ~v~~~~~~~~~~~~~~~~~~-l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~-~-- 192 (430)
......| +|||+. ++..+. +..|.++|+.+++....... .. ......|+|||+.++. . .
T Consensus 189 ~~~~p~w-------SpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~-~g-----~~~~~~~SPDG~~la~~~~~~g 255 (419)
T PRK04043 189 LNIFPKW-------ANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASS-QG-----MLVVSDVSKDGSKLLLTMAPKG 255 (419)
T ss_pred CeEeEEE-------CCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecC-CC-----cEEeeEECCCCCEEEEEEccCC
Confidence 6667788 778874 554433 35699999988876554432 21 3456789999988873 2 2
Q ss_pred CCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCC--eEEEEEcCCceeeEEeeccccCeEE
Q 014125 193 NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ--TSAIYREDNMELLYVLHGQEGGVTH 270 (430)
Q Consensus 193 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~v~~~d~~~~~~~~~~~~~~~~i~~ 270 (430)
+..|.++|+..+. .. .+ ..+........|+|++..++++....+ .|++.|+.+++..+.... +. ..
T Consensus 256 ~~~Iy~~dl~~g~--~~---~L----T~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~--g~-~~ 323 (419)
T PRK04043 256 QPDIYLYDTNTKT--LT---QI----TNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH--GK-NN 323 (419)
T ss_pred CcEEEEEECCCCc--EE---Ec----ccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC--CC-cC
Confidence 3567777875532 11 11 111112334579997776666665554 577778887765433321 11 23
Q ss_pred EEEccCCCEEEEEecCC--------CeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccC-C--cEEEE
Q 014125 271 VQFSRDGNYLYTGGRKD--------PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQD-G--LVHIY 339 (430)
Q Consensus 271 ~~~~~~~~~l~~~~~~d--------~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i~vw 339 (430)
..|+|+|+.|+...... ..|.+.|+.++... .+.. . .......|+|||+.|+..+.+ + .+.+.
T Consensus 324 ~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~--~LT~-~---~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~ 397 (419)
T PRK04043 324 SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR--RLTA-N---GVNQFPRFSSDGGSIMFIKYLGNQSALGII 397 (419)
T ss_pred ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE--ECCC-C---CCcCCeEECCCCCEEEEEEccCCcEEEEEE
Confidence 48999999988877332 36888888776432 2221 1 122358899999987766543 2 36677
Q ss_pred EcCCCCeecccccccCCeeE
Q 014125 340 DLQTGKWISGFQAAADTVNG 359 (430)
Q Consensus 340 d~~~~~~~~~~~~~~~~v~~ 359 (430)
+++. .....+....+.+..
T Consensus 398 ~l~g-~~~~~l~~~~g~~~~ 416 (419)
T PRK04043 398 RLNY-NKSFLFPLKVGKIQS 416 (419)
T ss_pred ecCC-CeeEEeecCCCccCC
Confidence 7754 333334333333433
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.3e-09 Score=95.42 Aligned_cols=252 Identities=12% Similarity=0.129 Sum_probs=159.1
Q ss_pred eeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccC
Q 014125 53 FRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS 132 (430)
Q Consensus 53 ~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 132 (430)
-+++.||++.|.-+.|+...+.|-|...+|.|.||-+-.++...+ ...-...+.|.+++|
T Consensus 64 NQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EE---------------MiNnRnKSvV~SmsW----- 123 (1189)
T KOG2041|consen 64 NQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEE---------------MINNRNKSVVVSMSW----- 123 (1189)
T ss_pred hhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHH---------------HhhCcCccEEEEEEE-----
Confidence 358899999999999999999999999999999999876654322 222223467999999
Q ss_pred ccCCCCceEEEEeCCCcEEEEeccCCceee-eeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCc-cc
Q 014125 133 ASDPTSCVFASTTRDHPIHLWDATTGLLRC-TYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRD-FE 209 (430)
Q Consensus 133 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~-~~ 209 (430)
+.+|..+...-.||.|.+=.++..+.-. .+++. ....+.|++|.+.++.+ ..|.+.+||....-.. ++
T Consensus 124 --n~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~-------~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~ 194 (1189)
T KOG2041|consen 124 --NLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQ-------LLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLE 194 (1189)
T ss_pred --cCCCcEEEEEEccCCEEEEeeccceecchhcchh-------eccceeecccHHHHHhhhcCCcEEEecccccHHHhhh
Confidence 7789999988899988776665433211 11111 33478899999888755 7899999997642110 00
Q ss_pred --ccccccCCCCCCCcceEEEEEc-------CCCCceEEEecCCCeEEEEEcCCc-eeeEEeeccccCeEEEEEccCCCE
Q 014125 210 --KYSTLKGNKEGQAGIMSAIAFS-------PTHTGMLAIGSYSQTSAIYREDNM-ELLYVLHGQEGGVTHVQFSRDGNY 279 (430)
Q Consensus 210 --~~~~~~~~~~~~~~~v~~~~~~-------~~~~~~l~~~~~dg~v~~~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~ 279 (430)
...............+..+.|. |.+...|+++..+|.+.+-.-.+. .++ .+. ..-.+..+.|+++|..
T Consensus 195 ~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pv-v~d-tgm~~vgakWnh~G~v 272 (1189)
T KOG2041|consen 195 KDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPV-VVD-TGMKIVGAKWNHNGAV 272 (1189)
T ss_pred hceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCe-EEe-cccEeecceecCCCcE
Confidence 0000011111112224555553 225668999999999888654333 333 333 2367899999999999
Q ss_pred EEEEecCCC---------eEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcC
Q 014125 280 LYTGGRKDP---------YILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQ 342 (430)
Q Consensus 280 l~~~~~~d~---------~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 342 (430)
|+++| .+. .|.+|..-.. .. .........|++++|-..|-.++.+ -|+.|++-+++
T Consensus 273 LAvcG-~~~da~~~~d~n~v~Fysp~G~--i~---gtlkvpg~~It~lsWEg~gLriA~A-vdsfiyfanIR 337 (1189)
T KOG2041|consen 273 LAVCG-NDSDADEPTDSNKVHFYSPYGH--IV---GTLKVPGSCITGLSWEGTGLRIAIA-VDSFIYFANIR 337 (1189)
T ss_pred EEEcc-CcccccCccccceEEEeccchh--he---EEEecCCceeeeeEEcCCceEEEEE-ecceEEEEeec
Confidence 99988 442 3444432211 11 1113455678888887766555544 24444444443
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.4e-09 Score=86.73 Aligned_cols=255 Identities=12% Similarity=0.147 Sum_probs=164.1
Q ss_pred CCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCc-----eeeeeecccc-------cccccceEEEEECCCC
Q 014125 118 EGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGL-----LRCTYRAYDA-------VDEITAAFSVAFNPTG 185 (430)
Q Consensus 118 ~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-----~~~~~~~~~~-------~~~~~~v~~~~~~~~~ 185 (430)
....|+++.| ...|.+|++|...|.|.++.-+... ....++.|.. .+-...|..+.|-.++
T Consensus 25 ead~ItaVef-------d~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t 97 (460)
T COG5170 25 EADKITAVEF-------DETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDT 97 (460)
T ss_pred ccceeeEEEe-------ccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCC
Confidence 3467888888 6678999999999999999865432 1222333321 1112357778876554
Q ss_pred ---cEEEEEcCCeEEEEEcCCCCC------------------ccccccc-----------------ccCCCCCCCcceEE
Q 014125 186 ---TKIFAGYNKSVRVFDVHRPGR------------------DFEKYST-----------------LKGNKEGQAGIMSA 227 (430)
Q Consensus 186 ---~~l~~~~d~~i~v~d~~~~~~------------------~~~~~~~-----------------~~~~~~~~~~~v~~ 227 (430)
.+|+++.|.+|++|.+..... +...... .+.....|...+.+
T Consensus 98 ~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNS 177 (460)
T COG5170 98 GRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINS 177 (460)
T ss_pred CcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeee
Confidence 466788999999999875411 1100000 01122467778899
Q ss_pred EEEcCCCCceEEEecCCCeEEEEEcCCce---eeEEeeccc-----cCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCc
Q 014125 228 IAFSPTHTGMLAIGSYSQTSAIYREDNME---LLYVLHGQE-----GGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAV 299 (430)
Q Consensus 228 ~~~~~~~~~~l~~~~~dg~v~~~d~~~~~---~~~~~~~~~-----~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~ 299 (430)
+.|+. +...++ .+.|-.|.+|++.-.. .+..++.|. .-|++..|+|....++.-++..|.|++-|++...
T Consensus 178 iS~Ns-D~et~l-SaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~a 255 (460)
T COG5170 178 ISFNS-DKETLL-SADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSA 255 (460)
T ss_pred eeecC-chheee-eccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhh
Confidence 99988 444444 4457889999876432 122333443 3588999999654433333379999999998432
Q ss_pred eEEE--Eee----------cccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCC-CCeeccccccc------------
Q 014125 300 QVVY--KLY----------RSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQT-GKWISGFQAAA------------ 354 (430)
Q Consensus 300 ~~~~--~~~----------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~------------ 354 (430)
.... .++ -..+-...|..+.|+++|+++++-+. -+|++||++. ..+++++..|.
T Consensus 256 lcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEn 334 (460)
T COG5170 256 LCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYEN 334 (460)
T ss_pred hccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhc
Confidence 1100 000 01123456888999999999998765 4799999985 45566665443
Q ss_pred CCe---eEEEEcCCCcEEEEeeCCceeeecC
Q 014125 355 DTV---NGFSFHPFLPMAASSSGHRRFPVDD 382 (430)
Q Consensus 355 ~~v---~~~~~~~~~~~l~s~~~d~~~~vw~ 382 (430)
+.| ..+.|+.+.+.+.+|+..+.+-++-
T Consensus 335 DaifdkFeisfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 335 DAIFDKFEISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred cceeeeEEEEecCCcccccccccccceeeec
Confidence 223 3578899999999999988888874
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.3e-07 Score=93.05 Aligned_cols=246 Identities=12% Similarity=0.170 Sum_probs=154.5
Q ss_pred CCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEE----eccCCceeeeeecccccccccceEEEEECCCCcEEE-EEc
Q 014125 118 EGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLW----DATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGY 192 (430)
Q Consensus 118 ~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vw----d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~ 192 (430)
....|.++.| -++...++.+..+|.|.+. +..+..... ...... .|.+++||||+..++ +..
T Consensus 74 ~~~~ivs~~y-------l~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~-VG~vd~-----GI~a~~WSPD~Ella~vT~ 140 (928)
T PF04762_consen 74 PNDKIVSFQY-------LADSESLCIALASGDIILVREDPDPDEDEIEI-VGSVDS-----GILAASWSPDEELLALVTG 140 (928)
T ss_pred CCCcEEEEEe-------ccCCCcEEEEECCceEEEEEccCCCCCceeEE-EEEEcC-----cEEEEEECCCcCEEEEEeC
Confidence 3467888888 4567789999999999999 544443221 122222 899999999999998 557
Q ss_pred CCeEEEEEcCCC------------CC----------ccccc------------cccc------CCCCCCCcceEEEEEcC
Q 014125 193 NKSVRVFDVHRP------------GR----------DFEKY------------STLK------GNKEGQAGIMSAIAFSP 232 (430)
Q Consensus 193 d~~i~v~d~~~~------------~~----------~~~~~------------~~~~------~~~~~~~~~v~~~~~~~ 232 (430)
+++|.+..-.-. +. .-..+ .... .... ....-..++|-.
T Consensus 141 ~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRG 219 (928)
T PF04762_consen 141 EGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRG 219 (928)
T ss_pred CCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECC
Confidence 778777643210 00 00000 0000 0011 233556789998
Q ss_pred CCCceEEEecC---C---CeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecC--CCeEEEEeCCCCceEEEE
Q 014125 233 THTGMLAIGSY---S---QTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRK--DPYILCWDLRKAVQVVYK 304 (430)
Q Consensus 233 ~~~~~l~~~~~---d---g~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~--d~~i~i~d~~~~~~~~~~ 304 (430)
++.++|+.+. . ..+++|+-+ |.....-..-.+--.+++|-|.|++|++.-+. ...|.+|.-+..+.....
T Consensus 220 -DG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~ 297 (928)
T PF04762_consen 220 -DGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFT 297 (928)
T ss_pred -CCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEe
Confidence 5567777664 2 579999876 65544444334444678999999999988732 356777775544332222
Q ss_pred eecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCe--ecccccc-cCCeeEEEEcCCCc-EEEEeeCCceeee
Q 014125 305 LYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKW--ISGFQAA-ADTVNGFSFHPFLP-MAASSSGHRRFPV 380 (430)
Q Consensus 305 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~-~~~v~~~~~~~~~~-~l~s~~~d~~~~v 380 (430)
+ ........+..+.|++++..||..-.|. |.+|-..+... .+.+... ...+..+.|+|... .|...+.++.+..
T Consensus 298 l-~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~ 375 (928)
T PF04762_consen 298 L-RFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEI 375 (928)
T ss_pred c-CCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEE
Confidence 2 2234566789999999999999987665 99999887654 2233322 23455699999655 4666665565554
Q ss_pred c
Q 014125 381 D 381 (430)
Q Consensus 381 w 381 (430)
+
T Consensus 376 ~ 376 (928)
T PF04762_consen 376 Y 376 (928)
T ss_pred E
Confidence 4
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.3e-09 Score=91.27 Aligned_cols=168 Identities=15% Similarity=0.117 Sum_probs=105.3
Q ss_pred ceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcC
Q 014125 175 AAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED 253 (430)
Q Consensus 175 ~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~ 253 (430)
....+..++.+++++++ .+....+++.....+..+...... .......++.+..+. .....-..+....+.+|...
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~--v~~~~~ai~~~~~~~-sv~v~dkagD~~~~di~s~~ 140 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC--VPKRPTAISFIREDT-SVLVADKAGDVYSFDILSAD 140 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee--cccCcceeeeeeccc-eEEEEeecCCceeeeeeccc
Confidence 34456677888888865 556666777765433111111100 011112233333322 11111123333445555555
Q ss_pred CceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccC
Q 014125 254 NMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQD 333 (430)
Q Consensus 254 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 333 (430)
.+.. ..+-+|-.-++.++|+||+++|+++. .|..|++-........-.. ..+|..-|..++.-++ ..|++||.|
T Consensus 141 ~~~~-~~~lGhvSml~dVavS~D~~~IitaD-RDEkIRvs~ypa~f~Iesf---clGH~eFVS~isl~~~-~~LlS~sGD 214 (390)
T KOG3914|consen 141 SGRC-EPILGHVSMLLDVAVSPDDQFIITAD-RDEKIRVSRYPATFVIESF---CLGHKEFVSTISLTDN-YLLLSGSGD 214 (390)
T ss_pred ccCc-chhhhhhhhhheeeecCCCCEEEEec-CCceEEEEecCcccchhhh---ccccHhheeeeeeccC-ceeeecCCC
Confidence 4333 34457999999999999999999999 9999999776554222111 1579999999998774 569999999
Q ss_pred CcEEEEEcCCCCeecccc
Q 014125 334 GLVHIYDLQTGKWISGFQ 351 (430)
Q Consensus 334 g~i~vwd~~~~~~~~~~~ 351 (430)
++|++||+.+|+.+.++.
T Consensus 215 ~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 215 KTLRLWDITSGKLLDTCD 232 (390)
T ss_pred CcEEEEecccCCcccccc
Confidence 999999999999876554
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=99.11 E-value=2e-07 Score=75.26 Aligned_cols=231 Identities=12% Similarity=0.066 Sum_probs=126.3
Q ss_pred CCCCceEEEEeCCCcEEEEeccCC--ceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCccccc
Q 014125 135 DPTSCVFASTTRDHPIHLWDATTG--LLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKY 211 (430)
Q Consensus 135 ~~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~ 211 (430)
+.+|++||.. .|..|.+-...+. ..+...+.+.. ....-..++|+||+.+|+.+ ..|+|++||+..... -.+
T Consensus 6 ~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD--~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l--f~I 80 (282)
T PF15492_consen 6 SSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKD--PNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSEL--FVI 80 (282)
T ss_pred cCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCC--CCchheEEEECCCCcEEEEEcCCCeEEEEeccccee--EEc
Confidence 5677777665 4555666655443 22233333221 12256789999999999955 889999999864211 111
Q ss_pred ccccCCCCCCCcceEEEEEcCCC-----CceEEEecCCCeEEEEEcCCc-----eeeEEe--ec-cccCeEEEEEccCCC
Q 014125 212 STLKGNKEGQAGIMSAIAFSPTH-----TGMLAIGSYSQTSAIYREDNM-----ELLYVL--HG-QEGGVTHVQFSRDGN 278 (430)
Q Consensus 212 ~~~~~~~~~~~~~v~~~~~~~~~-----~~~l~~~~~dg~v~~~d~~~~-----~~~~~~--~~-~~~~i~~~~~~~~~~ 278 (430)
.........-...|..+.|.+.. ...|++-..+|.++-|-+..+ +....+ .. +...|.++.++|..+
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~ 160 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR 160 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence 11111111223567777775532 335666677888877765321 222222 22 356899999999999
Q ss_pred EEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCE--EEEEccCCc------EEEEEcCCCCeeccc
Q 014125 279 YLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRH--LGTGGQDGL------VHIYDLQTGKWISGF 350 (430)
Q Consensus 279 ~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~dg~------i~vwd~~~~~~~~~~ 350 (430)
.|+++|.....-..+ ......+++-..-.+..+ .++..+|+. -.+|.+-+.+.....
T Consensus 161 LLlVgG~~~~~~~~s---------------~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~ 225 (282)
T PF15492_consen 161 LLLVGGCEQNQDGMS---------------KASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQ 225 (282)
T ss_pred EEEEeccCCCCCccc---------------cccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeecc
Confidence 999888444321000 111222222222211111 112222221 234444433332222
Q ss_pred ccccCCeeEEEEcCCCcEEEEeeCCceeeecCCCc
Q 014125 351 QAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFED 385 (430)
Q Consensus 351 ~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~ 385 (430)
....+.|..|..+|||.+||+...+|.+.+|+...
T Consensus 226 ~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPs 260 (282)
T PF15492_consen 226 GQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPS 260 (282)
T ss_pred ccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCc
Confidence 33566899999999999999998766666665544
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.4e-08 Score=83.92 Aligned_cols=239 Identities=18% Similarity=0.190 Sum_probs=136.3
Q ss_pred eeecCCCeeeeeeeccccCccCCCCc-eEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE
Q 014125 114 LVVTEGESVYDFCWFPHMSASDPTSC-VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG 191 (430)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~ 191 (430)
+...++..|.+++|+| ..+ ++..++.+..|+|.|+++...+..+..+. .+++++|.-+....+ +|
T Consensus 188 ~lp~~g~~IrdlafSp-------~~~GLl~~asl~nkiki~dlet~~~vssy~a~~------~~wSC~wDlde~h~IYaG 254 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSP-------FNEGLLGLASLGNKIKIMDLETSCVVSSYIAYN------QIWSCCWDLDERHVIYAG 254 (463)
T ss_pred cccccchhhhhhccCc-------cccceeeeeccCceEEEEecccceeeeheeccC------CceeeeeccCCcceeEEe
Confidence 4556677899999954 444 78889999999999999998888887764 899999998876555 88
Q ss_pred -cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCC-----CCceEEEecCCCeEEEEEcC--CceeeEEee-
Q 014125 192 -YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPT-----HTGMLAIGSYSQTSAIYRED--NMELLYVLH- 262 (430)
Q Consensus 192 -~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~l~~~~~dg~v~~~d~~--~~~~~~~~~- 262 (430)
.+|.|.+||++.+...+.....- ....+|..++.-+. .+.+++....+ ...|... .+.....+.
T Consensus 255 l~nG~VlvyD~R~~~~~~~e~~a~-----~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlel 327 (463)
T KOG1645|consen 255 LQNGMVLVYDMRQPEGPLMELVAN-----VTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLEL 327 (463)
T ss_pred ccCceEEEEEccCCCchHhhhhhh-----hccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCccccc
Confidence 89999999999876544322110 11223443333221 23344444433 2233322 222222222
Q ss_pred ccccCeEEEEEccCCCEEEEEecCCCe------EEE-EeCCCCceEEEEeecc-cCCccce---EEEEEcCCCCEEE-EE
Q 014125 263 GQEGGVTHVQFSRDGNYLYTGGRKDPY------ILC-WDLRKAVQVVYKLYRS-SEHTNQR---ILFDIEPSGRHLG-TG 330 (430)
Q Consensus 263 ~~~~~i~~~~~~~~~~~l~~~~~~d~~------i~i-~d~~~~~~~~~~~~~~-~~~~~~v---~~~~~~~~~~~l~-~~ 330 (430)
...+.+.++++.+..+.++.+.+.+.. +-. -|.+++..+....... .....++ ..+.-.++.++|+ +|
T Consensus 328 e~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~g 407 (463)
T KOG1645|consen 328 EPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVG 407 (463)
T ss_pred CCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEec
Confidence 134567777777766777666533211 111 1122222221111100 0000000 0111234445544 55
Q ss_pred ccCCcEEEEEcCCCCeecccccccCCeeEEEEcCC--CcEEEEee
Q 014125 331 GQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPF--LPMAASSS 373 (430)
Q Consensus 331 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~ 373 (430)
+.-+.+.+||..+.+.++.+... .+|.++..... +.+|++-.
T Consensus 408 d~tn~lil~D~~s~evvQ~l~~~-epv~Dicp~~~n~~syLa~LT 451 (463)
T KOG1645|consen 408 DSTNELILQDPHSFEVVQTLALS-EPVLDICPNDTNGSSYLALLT 451 (463)
T ss_pred CCcceeEEeccchhheeeecccC-cceeecceeecCCcchhhhee
Confidence 55678999999999999998844 78888766532 33555554
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.3e-08 Score=78.61 Aligned_cols=189 Identities=13% Similarity=0.117 Sum_probs=120.8
Q ss_pred cEEE-EEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeecc
Q 014125 186 TKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ 264 (430)
Q Consensus 186 ~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~ 264 (430)
.+|+ .|..|...+|...+........ ..+...|+-+.=.-+...-+..++.|.++++.++.-+.........
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~~~c-------d~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~ 157 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHLYQC-------DVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQ 157 (344)
T ss_pred cEEEeccccceeeeecccCcccceeee-------cccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecc
Confidence 4566 4588999999987643322211 1111111111111112334667788888888887644332222111
Q ss_pred ccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCC
Q 014125 265 EGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTG 344 (430)
Q Consensus 265 ~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 344 (430)
.-.+.+++++++++++++.+ ....|..|.+............ ......-.+..|+.....+|++..||++.|||++..
T Consensus 158 ~~~~ns~~~snd~~~~~~Vg-ds~~Vf~y~id~~sey~~~~~~-a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~ 235 (344)
T KOG4532|consen 158 NLTQNSLHYSNDPSWGSSVG-DSRRVFRYAIDDESEYIENIYE-APTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNM 235 (344)
T ss_pred ccceeeeEEcCCCceEEEec-CCCcceEEEeCCccceeeeeEe-cccCCCceeeeeccCcceEEEEecCCcEEEEEeccc
Confidence 12378999999999999999 8899999999876554434222 333444567889999999999999999999999864
Q ss_pred Cee-----cccccccCCeeEEEEcCCCc--EEEEeeCCceeeecCC
Q 014125 345 KWI-----SGFQAAADTVNGFSFHPFLP--MAASSSGHRRFPVDDF 383 (430)
Q Consensus 345 ~~~-----~~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~~~vw~~ 383 (430)
... .+-..|.+.++.+.|++.|. +|+..-.-+.+.|-|.
T Consensus 236 ~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~ 281 (344)
T KOG4532|consen 236 ATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDT 281 (344)
T ss_pred ccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEc
Confidence 322 23345889999999998665 4555444444444443
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.4e-07 Score=85.05 Aligned_cols=193 Identities=13% Similarity=0.063 Sum_probs=113.4
Q ss_pred ceeEEEECcCCce-EEEecCC---CeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCC
Q 014125 62 FLKGIKWSPDGSS-FLTSSED---KTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT 137 (430)
Q Consensus 62 ~v~~~~~sp~~~~-l~s~~~d---g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 137 (430)
.+....|||||+. ++..+.+ ..|.++|+.+++.. ......+......| +||
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~------------------~lt~~~g~~~~~~~-------SPD 243 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKE------------------KIASSQGMLVVSDV-------SKD 243 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEE------------------EEecCCCcEEeeEE-------CCC
Confidence 6778999999984 6644433 46888888765321 11112234455667 788
Q ss_pred CceEEE-EeCC--CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE-cCC--eEEEEEcCCCCCcccc
Q 014125 138 SCVFAS-TTRD--HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNK--SVRVFDVHRPGRDFEK 210 (430)
Q Consensus 138 ~~~l~~-~~~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~--~i~v~d~~~~~~~~~~ 210 (430)
|+.++. .+.+ ..|.++++.+++.... ..... ......|+|||+.|+ ++ ..+ .|.+.|+..+.. +
T Consensus 244 G~~la~~~~~~g~~~Iy~~dl~~g~~~~L-T~~~~-----~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~--~- 314 (419)
T PRK04043 244 GSKLLLTMAPKGQPDIYLYDTNTKTLTQI-TNYPG-----IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV--E- 314 (419)
T ss_pred CCEEEEEEccCCCcEEEEEECCCCcEEEc-ccCCC-----ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe--E-
Confidence 976654 3334 4688888877764433 22221 122457999999888 44 333 577777765322 1
Q ss_pred cccccCCCCCCCcceEEEEEcCCCCceEEEecCC--------CeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEE
Q 014125 211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS--------QTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYT 282 (430)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------g~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 282 (430)
.+. ..+.. ...|+|++..++++.... ..|.+.|+.++... .+... .......|+|||+.|+.
T Consensus 315 --rlt--~~g~~----~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SPDG~~I~f 384 (419)
T PRK04043 315 --QVV--FHGKN----NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSSDGGSIMF 384 (419)
T ss_pred --eCc--cCCCc----CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECCCCCEEEE
Confidence 111 11111 238999766666655443 36888898877643 33322 23346899999998877
Q ss_pred EecCCC--eEEEEeCCCC
Q 014125 283 GGRKDP--YILCWDLRKA 298 (430)
Q Consensus 283 ~~~~d~--~i~i~d~~~~ 298 (430)
.....+ .+.+.++...
T Consensus 385 ~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 385 IKYLGNQSALGIIRLNYN 402 (419)
T ss_pred EEccCCcEEEEEEecCCC
Confidence 663333 3556666554
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.5e-07 Score=76.90 Aligned_cols=192 Identities=17% Similarity=0.129 Sum_probs=119.1
Q ss_pred CCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccC
Q 014125 137 TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKG 216 (430)
Q Consensus 137 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~ 216 (430)
++..+++++.++.+..||..+|+.+..+........ .....++..++...++.|+.+|..++...+........
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~------~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~ 108 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISG------APVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSP 108 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGS------GEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccc------eeeecccccccccceeeeEecccCCcceeeeecccccc
Confidence 466788888999999999999999888876432111 12333555555667889999998876554431111100
Q ss_pred CCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccC----------eEEEEEccCCCEEEEEecC
Q 014125 217 NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGG----------VTHVQFSRDGNYLYTGGRK 286 (430)
Q Consensus 217 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~----------i~~~~~~~~~~~l~~~~~~ 286 (430)
... ........+ .+..++++..++.|..+|.++|+.+......... +..-....++ .++.+. .
T Consensus 109 ~~~--~~~~~~~~~---~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~-~ 181 (238)
T PF13360_consen 109 PAG--VRSSSSPAV---DGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSS-G 181 (238)
T ss_dssp TCS--TB--SEEEE---ETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEEC-C
T ss_pred ccc--cccccCceE---ecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEc-C
Confidence 000 111112222 2447788888999999999999998777653322 1222222344 677776 6
Q ss_pred CCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeec
Q 014125 287 DPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWIS 348 (430)
Q Consensus 287 d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 348 (430)
++.+..+|+.++.... .. . ...+.. ...+++..|+.++.++.|..||+++|+.+.
T Consensus 182 ~g~~~~~d~~tg~~~w-~~---~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 182 DGRVVAVDLATGEKLW-SK---P--ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp TSSEEEEETTTTEEEE-EE---C--SS-ECE-CEECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred CCeEEEEECCCCCEEE-Ee---c--CCCccC-CceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence 7754444999986442 21 1 111222 134667888888899999999999998764
|
... |
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.05 E-value=6.3e-09 Score=87.28 Aligned_cols=159 Identities=13% Similarity=0.157 Sum_probs=107.3
Q ss_pred EEEEcCCCCceEEEecCCCeEEEEEcCCcee----eEEeeccccCeEEEEEccCCCEEEEEe--cCCCeEEEEeCCCCce
Q 014125 227 AIAFSPTHTGMLAIGSYSQTSAIYREDNMEL----LYVLHGQEGGVTHVQFSRDGNYLYTGG--RKDPYILCWDLRKAVQ 300 (430)
Q Consensus 227 ~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~d~~i~i~d~~~~~~ 300 (430)
.+..+| ++.++|++..+....+++.+.... ..... -...-+++.|..+.....++. +....+.+|....+
T Consensus 67 ~~~~s~-~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~-- 142 (390)
T KOG3914|consen 67 LVLTSD-SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG-- 142 (390)
T ss_pred ccccCC-CceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeeccccc--
Confidence 344555 778889888888877777665432 22221 222345556655555555544 13344455554432
Q ss_pred EEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccc-ccccCCeeEEEEcCCCcEEEEeeCCceee
Q 014125 301 VVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGF-QAAADTVNGFSFHPFLPMAASSSGHRRFP 379 (430)
Q Consensus 301 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~d~~~~ 379 (430)
......+|-+.++.++|+||+++|+++..|..|+|-.+.....+..+ -||..-|..++.-++.. |+++|
T Consensus 143 ---~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~-LlS~s------ 212 (390)
T KOG3914|consen 143 ---RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYL-LLSGS------ 212 (390)
T ss_pred ---CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCce-eeecC------
Confidence 12233689999999999999999999999999999888866666655 46999999999886544 55554
Q ss_pred ecCCCccccccCCCcEEEEeecccccccccC
Q 014125 380 VDDFEDLHLSGDENCVSVWSFLYASMMENAD 410 (430)
Q Consensus 380 vw~~~~l~~~~~d~~i~~w~~~~~~~~~~~~ 410 (430)
.|+++++||+..++.+..+.
T Consensus 213 -----------GD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 213 -----------GDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred -----------CCCcEEEEecccCCcccccc
Confidence 57888888888888775443
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=9.5e-08 Score=87.07 Aligned_cols=244 Identities=12% Similarity=0.119 Sum_probs=161.8
Q ss_pred eeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCc---cCCC--
Q 014125 63 LKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA---SDPT-- 137 (430)
Q Consensus 63 v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~~~~-- 137 (430)
-.++.|+|.| +||-|+.. .|.+-|..+-+....+. .|...|..+.|.|.... ++|.
T Consensus 18 ~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q~iqsie-----------------~h~s~V~~VrWap~~~p~~llS~~~~ 78 (1062)
T KOG1912|consen 18 RNAADWSPSG-LIAYGSHS-LVSVVDSRSLQLIQSIE-----------------LHQSAVTSVRWAPAPSPRDLLSPSSS 78 (1062)
T ss_pred ccccccCccc-eEEEecCc-eEEEEehhhhhhhhccc-----------------cCccceeEEEeccCCCchhccCcccc
Confidence 5688999977 88888765 67888876654433222 34478999999885432 2332
Q ss_pred CceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCC---C-cEEE-EEcCCeEEEEEcCCCCCcccccc
Q 014125 138 SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT---G-TKIF-AGYNKSVRVFDVHRPGRDFEKYS 212 (430)
Q Consensus 138 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~-~~l~-~~~d~~i~v~d~~~~~~~~~~~~ 212 (430)
.-+||++...|.|.+||...+..+..+..+.. ++..++|-+. . .+++ ......|.+|+..+++..++.
T Consensus 79 ~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~-----~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~-- 151 (1062)
T KOG1912|consen 79 QLLIASADISGRIILVDFVLASVINWLSHSND-----SVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKY-- 151 (1062)
T ss_pred ceeEEeccccCcEEEEEehhhhhhhhhcCCCc-----chhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecc--
Confidence 34677888889999999999888888877665 7777887653 3 2333 457889999999887554432
Q ss_pred cccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCC-------ceeeEEeecccc-------------------
Q 014125 213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN-------MELLYVLHGQEG------------------- 266 (430)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~-------~~~~~~~~~~~~------------------- 266 (430)
........|+.+.|.+.+.+..-+..|.|.+-+.-. ++..+.-..|..
T Consensus 152 ------~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~ 225 (1062)
T KOG1912|consen 152 ------DYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPA 225 (1062)
T ss_pred ------ccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCc
Confidence 122345778999998888888877788877765321 122222222211
Q ss_pred ------CeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCC--CEEEEEccCCcEEE
Q 014125 267 ------GVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSG--RHLGTGGQDGLVHI 338 (430)
Q Consensus 267 ------~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~v 338 (430)
....++|+|.-+.++-.. ....+.++|++-....... .-..+.+.-+.+-|++ ..|++.-.||.+.+
T Consensus 226 sa~fity~a~faf~p~~rn~lfi~-~prellv~dle~~~~l~vv----pier~~akfv~vlP~~~rd~LfclH~nG~lti 300 (1062)
T KOG1912|consen 226 SAYFITYCAQFAFSPHWRNILFIT-FPRELLVFDLEYECCLAVV----PIERGGAKFVDVLPDPRRDALFCLHSNGRLTI 300 (1062)
T ss_pred chhHHHHHHhhhcChhhhceEEEE-eccceEEEcchhhceeEEE----EeccCCcceeEeccCCCcceEEEEecCCeEEE
Confidence 012366788766555555 6888999999866443222 1233444456666665 57999999999999
Q ss_pred EEcCC
Q 014125 339 YDLQT 343 (430)
Q Consensus 339 wd~~~ 343 (430)
|-.+.
T Consensus 301 rvrk~ 305 (1062)
T KOG1912|consen 301 RVRKE 305 (1062)
T ss_pred EEeec
Confidence 97653
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.9e-09 Score=94.09 Aligned_cols=242 Identities=15% Similarity=0.189 Sum_probs=154.0
Q ss_pred eeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCC-------ceeeeeecccccccccceEEEEECCCCc
Q 014125 114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTG-------LLRCTYRAYDAVDEITAAFSVAFNPTGT 186 (430)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-------~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 186 (430)
...+|...|+.++- -.+.+-+++++.|.+|++|.++.. .+..+++.|.. +|.++.|-.+.+
T Consensus 730 nf~GH~~~iRai~A-------idNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk-----~i~~igfL~~lr 797 (1034)
T KOG4190|consen 730 NFTGHQEKIRAIAA-------IDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKK-----PIHDIGFLADLR 797 (1034)
T ss_pred cccCcHHHhHHHHh-------cccccceeeccCCceEEEEEeccccCccccceeeeEhhhccC-----cccceeeeeccc
Confidence 34567777777664 335677999999999999998642 24444554444 888999988877
Q ss_pred EEEEEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEe-cCCCeEEEEEcCCceeeEEee---
Q 014125 187 KIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIG-SYSQTSAIYREDNMELLYVLH--- 262 (430)
Q Consensus 187 ~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~v~~~d~~~~~~~~~~~--- 262 (430)
+++ +.|+.|.+||.-.+.. +.. .......+..+.|.++.-- +..+++.| +...+|+++|.+..+....++
T Consensus 798 ~i~-ScD~giHlWDPFigr~-Laq--~~dapk~~a~~~ikcl~nv--~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcn 871 (1034)
T KOG4190|consen 798 SIA-SCDGGIHLWDPFIGRL-LAQ--MEDAPKEGAGGNIKCLENV--DRHILIAGCSAESTVKLFDARSCEWTCELKVCN 871 (1034)
T ss_pred eee-eccCcceeecccccch-hHh--hhcCcccCCCceeEecccC--cchheeeeccchhhheeeecccccceeeEEecc
Confidence 665 4588999999754211 110 1111112222333333211 33344444 788999999999887655554
Q ss_pred --ccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEE-E
Q 014125 263 --GQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHI-Y 339 (430)
Q Consensus 263 --~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v-w 339 (430)
+...-+.+++..+.|+.++++- ..|+|.+.|.+++... ... .........++ .|..+.|+....|.++.| |
T Consensus 872 a~~Pna~~R~iaVa~~GN~lAa~L-SnGci~~LDaR~G~vI-Nsw---rpmecdllqla-apsdq~L~~saldHslaVnW 945 (1034)
T KOG4190|consen 872 APGPNALTRAIAVADKGNKLAAAL-SNGCIAILDARNGKVI-NSW---RPMECDLLQLA-APSDQALAQSALDHSLAVNW 945 (1034)
T ss_pred CCCCchheeEEEeccCcchhhHHh-cCCcEEEEecCCCcee-ccC---Ccccchhhhhc-CchhHHHHhhcccceeEeee
Confidence 3345688999999999999998 8999999999998422 111 22223333333 466677888888888888 8
Q ss_pred EcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeec
Q 014125 340 DLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVD 381 (430)
Q Consensus 340 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw 381 (430)
...++......+....+..- ...-|+-|+++.....+.||
T Consensus 946 haldgimh~q~kpppepahf--lqsvgpSLV~a~~Gn~lgVY 985 (1034)
T KOG4190|consen 946 HALDGIMHLQDKPPPEPAHF--LQSVGPSLVTAQNGNILGVY 985 (1034)
T ss_pred hhcCCeeeeccCCCCcchhh--hhccCceeEEeccCcEEEEE
Confidence 87777655544432222110 12246677777766667776
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.7e-08 Score=84.73 Aligned_cols=258 Identities=12% Similarity=0.055 Sum_probs=167.1
Q ss_pred ccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCC
Q 014125 57 SIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP 136 (430)
Q Consensus 57 ~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 136 (430)
.-|++.|+.+.-+. .+++.+++.||.++.|.-..-.-. ........|-..+.+++- +-
T Consensus 6 ymhrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~isGv--------------EfVKhFraHL~~I~sl~~-------S~ 63 (558)
T KOG0882|consen 6 YMHRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRISGV--------------EFVKHFRAHLGVILSLAV-------SY 63 (558)
T ss_pred hcccceeeeEeeeh-hheEEeeecchhhhhcCCCCccce--------------eehhhhHHHHHHHHhhhc-------cc
Confidence 45888888887664 579999999999999965421000 000111223344555544 66
Q ss_pred CCceEEEEeC-CCcEEEEeccCCceeeeeecccccccccceEEEEECCCC--cEEEEE--cCCeEEEEEcCCCCCccccc
Q 014125 137 TSCVFASTTR-DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG--TKIFAG--YNKSVRVFDVHRPGRDFEKY 211 (430)
Q Consensus 137 ~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~--~d~~i~v~d~~~~~~~~~~~ 211 (430)
++.++.+.+. |..++++|+++-..+.-++...-. ...++..++.. ..++++ .++.+.++|-.....+
T Consensus 64 dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lP----g~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q---- 135 (558)
T KOG0882|consen 64 DGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLP----GFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQ---- 135 (558)
T ss_pred cceeEeeccCcccceeEEEeeccchhhhcccccCC----CceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCc----
Confidence 8889999777 999999999876655444433221 11122222221 244544 6899999997654321
Q ss_pred ccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCC------ceeeEE---------eeccccCeEEEEEccC
Q 014125 212 STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN------MELLYV---------LHGQEGGVTHVQFSRD 276 (430)
Q Consensus 212 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~------~~~~~~---------~~~~~~~i~~~~~~~~ 276 (430)
......-|..+|.++.++| -...+++....|.|.-|.... .+.... +........++.|+|+
T Consensus 136 --~~~fkklH~sPV~~i~y~q-a~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~ 212 (558)
T KOG0882|consen 136 --DGYFKKLHFSPVKKIRYNQ-AGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPD 212 (558)
T ss_pred --cceecccccCceEEEEeec-cccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccc
Confidence 2222356778999999999 666888888899999998762 111111 1223456789999999
Q ss_pred CCEEEEEecCCCeEEEEeCCCCceEEEE-------------ee---------------cccCC-ccceEEEEEcCCCCEE
Q 014125 277 GNYLYTGGRKDPYILCWDLRKAVQVVYK-------------LY---------------RSSEH-TNQRILFDIEPSGRHL 327 (430)
Q Consensus 277 ~~~l~~~~~~d~~i~i~d~~~~~~~~~~-------------~~---------------~~~~~-~~~v~~~~~~~~~~~l 327 (430)
+..+.+.+ .|..|++++.++++..... .. ....+ ...-+.+.|...|++|
T Consensus 213 g~qistl~-~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~fl 291 (558)
T KOG0882|consen 213 GAQISTLN-PDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFL 291 (558)
T ss_pred cCcccccC-cccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEE
Confidence 99999999 9999999998876421100 00 00011 2233567888899999
Q ss_pred EEEccCCcEEEEEcCCCCeecc
Q 014125 328 GTGGQDGLVHIYDLQTGKWISG 349 (430)
Q Consensus 328 ~~~~~dg~i~vwd~~~~~~~~~ 349 (430)
+.|+-=| |+|.++.+++.++.
T Consensus 292 ly~t~~g-ikvin~~tn~v~ri 312 (558)
T KOG0882|consen 292 LYGTILG-IKVINLDTNTVVRI 312 (558)
T ss_pred Eeeccee-EEEEEeecCeEEEE
Confidence 9998876 89999988766544
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=99.02 E-value=9e-07 Score=73.88 Aligned_cols=246 Identities=13% Similarity=0.138 Sum_probs=152.3
Q ss_pred eEEEECc-CCceEEEecCCCe-EEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceE
Q 014125 64 KGIKWSP-DGSSFLTSSEDKT-LRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF 141 (430)
Q Consensus 64 ~~~~~sp-~~~~l~s~~~dg~-v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 141 (430)
..++.+| .+..++.+-.-|+ ..+||..+++....+... ....+.+|+ +| |+||++|
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~---------~gRHFyGHg------~f-------s~dG~~L 65 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAP---------PGRHFYGHG------VF-------SPDGRLL 65 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCC---------CCCEEecCE------EE-------cCCCCEE
Confidence 4678888 5667777777665 778999887654322211 112233332 23 8899999
Q ss_pred EEEeC-----CCcEEEEecc-CCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCccccccccc
Q 014125 142 ASTTR-----DHPIHLWDAT-TGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLK 215 (430)
Q Consensus 142 ~~~~~-----dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~ 215 (430)
++.-. .|.|-|||.. +-+.+.++..+.- ....+.+.||++.|+++..|-- +
T Consensus 66 ytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GI-----GPHel~l~pDG~tLvVANGGI~------T------------ 122 (305)
T PF07433_consen 66 YTTENDYETGRGVIGVYDAARGYRRIGEFPSHGI-----GPHELLLMPDGETLVVANGGIE------T------------ 122 (305)
T ss_pred EEeccccCCCcEEEEEEECcCCcEEEeEecCCCc-----ChhhEEEcCCCCEEEEEcCCCc------c------------
Confidence 98744 4789999998 5566667766654 4456889999988887654421 1
Q ss_pred CCCCCCCcceEEEEEcCC-CCceEEEecCCCeEEEEEcCCceeeEE--e--eccccCeEEEEEccCCCEEEEEecCCC--
Q 014125 216 GNKEGQAGIMSAIAFSPT-HTGMLAIGSYSQTSAIYREDNMELLYV--L--HGQEGGVTHVQFSRDGNYLYTGGRKDP-- 288 (430)
Q Consensus 216 ~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~v~~~d~~~~~~~~~--~--~~~~~~i~~~~~~~~~~~l~~~~~~d~-- 288 (430)
+|+ +...|-..+.+.++...|..+++.+.. + ..|...|..+++.++|..++..- ..|
T Consensus 123 ---------------hpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q-~qg~~ 186 (305)
T PF07433_consen 123 ---------------HPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQ-YQGDP 186 (305)
T ss_pred ---------------CcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEe-cCCCC
Confidence 010 111222233445555666677776655 3 33677899999999987655443 333
Q ss_pred -----eEEEEeCCCCceEEEE-eecccCCccceEEEEEcCCCCEEEEEc-cCCcEEEEEcCCCCeecccccccCCeeEEE
Q 014125 289 -----YILCWDLRKAVQVVYK-LYRSSEHTNQRILFDIEPSGRHLGTGG-QDGLVHIYDLQTGKWISGFQAAADTVNGFS 361 (430)
Q Consensus 289 -----~i~i~d~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~ 361 (430)
-|-+++.......... ......-.+.+-++++++++.++++.+ ..|.+.+||..+++.+....-. .+..++
T Consensus 187 ~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~--D~cGva 264 (305)
T PF07433_consen 187 GDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP--DACGVA 264 (305)
T ss_pred CccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccC--ceeeee
Confidence 2334433322111000 000123457888999999998876555 5678999999999988766533 466777
Q ss_pred EcCCCcEEEEee
Q 014125 362 FHPFLPMAASSS 373 (430)
Q Consensus 362 ~~~~~~~l~s~~ 373 (430)
-.+++ ++++++
T Consensus 265 ~~~~~-f~~ssG 275 (305)
T PF07433_consen 265 PTDDG-FLVSSG 275 (305)
T ss_pred ecCCc-eEEeCC
Confidence 77766 555554
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.99 E-value=8.9e-09 Score=81.35 Aligned_cols=96 Identities=21% Similarity=0.179 Sum_probs=70.3
Q ss_pred CeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCC-
Q 014125 245 QTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPS- 323 (430)
Q Consensus 245 g~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~- 323 (430)
+..+.|+++..+.+..-......|++++-+|..+.+++++..||.+.+||+++...+. .....|..+++.+-|+|.
T Consensus 159 d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~---S~l~ahk~~i~eV~FHpk~ 235 (319)
T KOG4714|consen 159 DNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPV---SLLKAHKAEIWEVHFHPKN 235 (319)
T ss_pred cceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchH---HHHHHhhhhhhheeccCCC
Confidence 3455566654433222222233599999999887777666699999999999874333 223678999999999995
Q ss_pred CCEEEEEccCCcEEEEEcCC
Q 014125 324 GRHLGTGGQDGLVHIYDLQT 343 (430)
Q Consensus 324 ~~~l~~~~~dg~i~vwd~~~ 343 (430)
+..|+++++||.+..||..+
T Consensus 236 p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 236 PEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred chheeEecCCCcEEEEcCCC
Confidence 57899999999999999874
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.3e-09 Score=62.15 Aligned_cols=37 Identities=32% Similarity=0.561 Sum_probs=35.0
Q ss_pred ceeecccCCCceeEEEECcCCceEEEecCCCeEEEEe
Q 014125 52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFS 88 (430)
Q Consensus 52 ~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~ 88 (430)
+.+++.+|.+.|++|+|+|++++|++|+.|+.|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4678899999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=3e-09 Score=87.36 Aligned_cols=155 Identities=15% Similarity=0.142 Sum_probs=113.7
Q ss_pred CcEEEEEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCc-----eeeE
Q 014125 185 GTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-----ELLY 259 (430)
Q Consensus 185 ~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~-----~~~~ 259 (430)
+..+++|.+-.|-+-++.++-. ..+ ...+.|.++.|.. ..+++..|..+|.|..+|++.. .+..
T Consensus 225 gyhfs~G~sqqv~L~nvetg~~---------qsf-~sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~ 293 (425)
T KOG2695|consen 225 GYHFSVGLSQQVLLTNVETGHQ---------QSF-QSKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQ 293 (425)
T ss_pred eeeecccccceeEEEEeecccc---------ccc-ccchhHHHHHhcc-cCCeeEecccCCcEEEEEeeecccCCCcceE
Confidence 4445577888888888876422 111 2345678888887 6789999999999999999875 3444
Q ss_pred EeeccccCeEEEEEcc-CCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceE--EEEEcCCCCEEEEEccCCcE
Q 014125 260 VLHGQEGGVTHVQFSR-DGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRI--LFDIEPSGRHLGTGGQDGLV 336 (430)
Q Consensus 260 ~~~~~~~~i~~~~~~~-~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~l~~~~~dg~i 336 (430)
.+- |...|+++..-. ++++|++++ .+|+|++||++..+... ....-.+|.+.-. -+-..+....+++++.|...
T Consensus 294 rly-h~Ssvtslq~Lq~s~q~LmaS~-M~gkikLyD~R~~K~~~-~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcyt 370 (425)
T KOG2695|consen 294 RLY-HDSSVTSLQILQFSQQKLMASD-MTGKIKLYDLRATKCKK-SVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYT 370 (425)
T ss_pred EEE-cCcchhhhhhhccccceEeecc-CcCceeEeeehhhhccc-ceeeeecccccccccccccccccceEEEccCeeEE
Confidence 554 889999998776 788888888 99999999999765421 1122234543322 23445667889999999999
Q ss_pred EEEEcCCCCeecccccc
Q 014125 337 HIYDLQTGKWISGFQAA 353 (430)
Q Consensus 337 ~vwd~~~~~~~~~~~~~ 353 (430)
+||.++.+.++.+++..
T Consensus 371 RiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 371 RIWSLDSGHLLCTIPFP 387 (425)
T ss_pred EEEecccCceeeccCCC
Confidence 99999999998888744
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.2e-06 Score=79.33 Aligned_cols=274 Identities=9% Similarity=0.048 Sum_probs=150.7
Q ss_pred CCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcE
Q 014125 71 DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPI 150 (430)
Q Consensus 71 ~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i 150 (430)
.+..+++++.+|.+.-+|..+++..-....... ...........+ .-.| .-++..++.++.+|.+
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~-------~~~~~~~~~~~~---~~~~-----~v~~~~v~v~~~~g~l 132 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEK-------DGWFSKNKSALL---SGGV-----TVAGGKVYIGSEKGQV 132 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCc-------cccccccccccc---cccc-----EEECCEEEEEcCCCEE
Confidence 356777788888999999888765432221110 000000000000 0000 1134567788899999
Q ss_pred EEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccC-CCCCCCcceEEEE
Q 014125 151 HLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKG-NKEGQAGIMSAIA 229 (430)
Q Consensus 151 ~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~ 229 (430)
..+|..+|+.+...+.... +.+--.-.++..++...++.|..+|..++...+........ ...+...++
T Consensus 133 ~ald~~tG~~~W~~~~~~~------~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~---- 202 (394)
T PRK11138 133 YALNAEDGEVAWQTKVAGE------ALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPA---- 202 (394)
T ss_pred EEEECCCCCCcccccCCCc------eecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCE----
Confidence 9999999998887765432 11111111455555567889999999876554432211000 000111111
Q ss_pred EcCCCCceEEEecCCCeEEEEEcCCceeeEEeecccc-------CeEEEEEcc--CCCEEEEEecCCCeEEEEeCCCCce
Q 014125 230 FSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEG-------GVTHVQFSR--DGNYLYTGGRKDPYILCWDLRKAVQ 300 (430)
Q Consensus 230 ~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~-------~i~~~~~~~--~~~~l~~~~~~d~~i~i~d~~~~~~ 300 (430)
.. + ..++.++.+|.+..+|..+++.+........ ....+.-+| .+..+++++ .+|.+..+|..+++.
T Consensus 203 v~--~-~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~-~~g~l~ald~~tG~~ 278 (394)
T PRK11138 203 TA--F-GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALA-YNGNLVALDLRSGQI 278 (394)
T ss_pred EE--C-CEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEE-cCCeEEEEECCCCCE
Confidence 11 2 2567778899999999998887655431110 011111222 345677777 799999999998865
Q ss_pred EEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccC-CeeEEEEcCCCcEEEEeeCCceee
Q 014125 301 VVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAAD-TVNGFSFHPFLPMAASSSGHRRFP 379 (430)
Q Consensus 301 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~s~~~d~~~~ 379 (430)
...... .. ...+.. .+..|+.++.+|.+..+|..+++.+........ ...+... .+.+|+.++.+|.+.
T Consensus 279 ~W~~~~---~~---~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~ 348 (394)
T PRK11138 279 VWKREY---GS---VNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLH 348 (394)
T ss_pred EEeecC---CC---ccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEE
Confidence 543221 11 111222 356788888999999999999987654432111 1111122 245666677677666
Q ss_pred ecCC
Q 014125 380 VDDF 383 (430)
Q Consensus 380 vw~~ 383 (430)
+.|.
T Consensus 349 ~ld~ 352 (394)
T PRK11138 349 WINR 352 (394)
T ss_pred EEEC
Confidence 6543
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.94 E-value=7.1e-08 Score=76.40 Aligned_cols=166 Identities=9% Similarity=0.011 Sum_probs=98.7
Q ss_pred eecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCc
Q 014125 54 RTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (430)
Q Consensus 54 ~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (430)
+.+.-|.++-.+-+.+-.++-++++..||.+.+.+.+.... +.... ..... .-.+.+.
T Consensus 83 ~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~---~~~~i---------~~~~~----~~as~~~------ 140 (319)
T KOG4714|consen 83 KVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLA---LMSRI---------PSIHS----GSASRKI------ 140 (319)
T ss_pred eeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHh---hhhhc---------ccccc----cccccce------
Confidence 34445555444444555677899999999999998864211 10000 00000 0000000
Q ss_pred cCCCCceEEEE-----eCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCC
Q 014125 134 SDPTSCVFAST-----TRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGR 206 (430)
Q Consensus 134 ~~~~~~~l~~~-----~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~v~d~~~~~~ 206 (430)
-..++.+.++ ..-+..+.|++...+....... ....|.+++-+|..+.++ +| .||.+.+||.+....
T Consensus 141 -~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~-----~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~ 214 (319)
T KOG4714|consen 141 -CRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKK-----ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAM 214 (319)
T ss_pred -eecccEEecCCcceEeeccceeeeccccccccccccc-----ccccchhhhCCcccccEEEEecCCCeEEEEEcccccc
Confidence 0012222222 1123355555543322211111 112588899999887766 55 899999999987522
Q ss_pred cccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCC
Q 014125 207 DFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN 254 (430)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~ 254 (430)
+...+..|+.++..+-|+|.++..|+++++||.+..||..+
T Consensus 215 -------p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 215 -------PVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred -------hHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 22234678889999999999999999999999999999875
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.5e-06 Score=76.37 Aligned_cols=268 Identities=11% Similarity=0.109 Sum_probs=147.2
Q ss_pred CceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEE
Q 014125 72 GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIH 151 (430)
Q Consensus 72 ~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 151 (430)
+..++.++.+|.+.-+|.++++..-..... ..+.+ .|. -.+..++.+..+|.+.
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~------------------~~~~s---sP~-----v~~~~v~v~~~~g~l~ 173 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVA------------------GEALS---RPV-----VSDGLVLVHTSNGMLQ 173 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCC------------------Cceec---CCE-----EECCEEEEECCCCEEE
Confidence 345667778899999999888654332211 11110 010 0234567788899999
Q ss_pred EEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccCCCCCCC-cceEEEEE
Q 014125 152 LWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQA-GIMSAIAF 230 (430)
Q Consensus 152 vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~ 230 (430)
.+|..+|+.+................+-... ++..++++.++.+..+|..++...+..... ....... .....+..
T Consensus 174 ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~-~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~--~~~~~~~~~~~~~~~~ 250 (394)
T PRK11138 174 ALNESDGAVKWTVNLDVPSLTLRGESAPATA-FGGAIVGGDNGRVSAVLMEQGQLIWQQRIS--QPTGATEIDRLVDVDT 250 (394)
T ss_pred EEEccCCCEeeeecCCCCcccccCCCCCEEE-CCEEEEEcCCCEEEEEEccCChhhheeccc--cCCCccchhcccccCC
Confidence 9999999988877643210000000011111 344555667888988888775443321100 0000000 00000111
Q ss_pred cCC-CCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeeccc
Q 014125 231 SPT-HTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSS 309 (430)
Q Consensus 231 ~~~-~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 309 (430)
+|- .+..+++++.+|.+..+|..+++.+..... .....+. ..+..+++++ .+|.+..+|..++........ .
T Consensus 251 sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~--~~~~~vy~~~-~~g~l~ald~~tG~~~W~~~~--~ 323 (394)
T PRK11138 251 TPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY--GSVNDFA--VDGGRIYLVD-QNDRVYALDTRGGVELWSQSD--L 323 (394)
T ss_pred CcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC--CCccCcE--EECCEEEEEc-CCCeEEEEECCCCcEEEcccc--c
Confidence 110 123566677899999999999987765432 1112222 2456788888 899999999988864432111 0
Q ss_pred CCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeE-EEEcCCCcEEEEeeCCceeee
Q 014125 310 EHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNG-FSFHPFLPMAASSSGHRRFPV 380 (430)
Q Consensus 310 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~s~~~d~~~~v 380 (430)
. .....+... .+.+|+.++.+|.|++.|..+|+.+...+.....+.+ ..+ .+..|+.++.||.+..
T Consensus 324 ~-~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~ 390 (394)
T PRK11138 324 L-HRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYA 390 (394)
T ss_pred C-CCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEE
Confidence 1 111111122 2567888999999999999999988776543332221 122 2345666665555443
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.90 E-value=3e-09 Score=97.93 Aligned_cols=232 Identities=13% Similarity=0.140 Sum_probs=152.8
Q ss_pred CCcceeeecceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCee
Q 014125 43 PHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESV 122 (430)
Q Consensus 43 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 122 (430)
..-.+..|+..++++.|+...+|++|+-+.+.|+.|+..|.|+++++.+|........ |+.+|
T Consensus 1084 r~~IFSRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~nc-----------------H~Sav 1146 (1516)
T KOG1832|consen 1084 RQFIFSRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNC-----------------HQSAV 1146 (1516)
T ss_pred chhhHhhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccc-----------------ccccc
Confidence 3445667788899999999999999999999999999999999999998866544433 33566
Q ss_pred eeeeeccccCccCCCCceEEEEeCCC--cEEEEeccC-CceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEE
Q 014125 123 YDFCWFPHMSASDPTSCVFASTTRDH--PIHLWDATT-GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRV 198 (430)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~l~~~~~dg--~i~vwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v 198 (430)
+-+.= +.+|..+++.+.-. ...+|++.+ +.....+. .-.++.|+.....-+ +.......+
T Consensus 1147 T~veP-------s~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~---------ed~~vkFsn~~q~r~~gt~~d~a~~ 1210 (1516)
T KOG1832|consen 1147 TLVEP-------SVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFD---------EDKAVKFSNSLQFRALGTEADDALL 1210 (1516)
T ss_pred ccccc-------cCCcceeeeeccccCchHHHhccccccCcccccc---------ccceeehhhhHHHHHhcccccceEE
Confidence 65543 66777776655433 578899864 33333333 334788876654444 345577899
Q ss_pred EEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCC
Q 014125 199 FDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGN 278 (430)
Q Consensus 199 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~ 278 (430)
||+.+.......+... .+....-++..|+|++ .+++ .|| .+||.+..+.++.|..... -..-.|+|+|.
T Consensus 1211 YDvqT~~~l~tylt~~----~~~~y~~n~a~FsP~D-~LIl---ndG--vLWDvR~~~aIh~FD~ft~-~~~G~FHP~g~ 1279 (1516)
T KOG1832|consen 1211 YDVQTCSPLQTYLTDT----VTSSYSNNLAHFSPCD-TLIL---NDG--VLWDVRIPEAIHRFDQFTD-YGGGGFHPSGN 1279 (1516)
T ss_pred EecccCcHHHHhcCcc----hhhhhhccccccCCCc-ceEe---eCc--eeeeeccHHHHhhhhhhee-cccccccCCCc
Confidence 9998854432211111 1222233678899954 3444 244 4799998888877765442 23447999999
Q ss_pred EEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEE
Q 014125 279 YLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTG 330 (430)
Q Consensus 279 ~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 330 (430)
.++.-+ .|||+++..... . -..-.-..+.|+..|..+...
T Consensus 1280 eVIINS------EIwD~RTF~lLh-~-----VP~Ldqc~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1280 EVIINS------EIWDMRTFKLLH-S-----VPSLDQCAVTFNSTGDVMYAM 1319 (1516)
T ss_pred eEEeec------hhhhhHHHHHHh-c-----CccccceEEEeccCccchhhh
Confidence 988776 589999864221 1 112223457788777765533
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.88 E-value=7.1e-07 Score=78.41 Aligned_cols=260 Identities=17% Similarity=0.263 Sum_probs=156.9
Q ss_pred EEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEE
Q 014125 65 GIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFAST 144 (430)
Q Consensus 65 ~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 144 (430)
-..||.|++|+|--..+ +|.||+..+..+... +.. .-..|....| +|.+++||.=
T Consensus 310 ~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~-Ksl----------------ki~gIr~Fsw-------sP~~~llAYw 364 (698)
T KOG2314|consen 310 IFRWSHDDKYFARMTGN-SISIYETPSFMLLDK-KSL----------------KISGIRDFSW-------SPTSNLLAYW 364 (698)
T ss_pred eEEeccCCceeEEeccc-eEEEEecCceeeecc-ccc----------------CCccccCccc-------CCCcceEEEE
Confidence 46899999999987775 789998875322111 110 1157888899 4556676654
Q ss_pred eCC-----CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcC-----------CeEEEEEcCCCCCcc
Q 014125 145 TRD-----HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYN-----------KSVRVFDVHRPGRDF 208 (430)
Q Consensus 145 ~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d-----------~~i~v~d~~~~~~~~ 208 (430)
... ..+.+..+.+++.++.-..++. .=..+.|-.+|.+|+.-.| ..+.|+.++...-+.
T Consensus 365 tpe~~~~parvtL~evPs~~~iRt~nlfnV-----sDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpv 439 (698)
T KOG2314|consen 365 TPETNNIPARVTLMEVPSKREIRTKNLFNV-----SDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPV 439 (698)
T ss_pred cccccCCcceEEEEecCccceeeeccceee-----eccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCc
Confidence 321 2466677777776666555432 2235678888888874211 246677776543332
Q ss_pred cccccccCCCCCCCcceEEEEEcCCCCceEEEecC--CCeEEEEEcCC-c---eeeEEeeccccCeEEEEEccCCCEEEE
Q 014125 209 EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY--SQTSAIYREDN-M---ELLYVLHGQEGGVTHVQFSRDGNYLYT 282 (430)
Q Consensus 209 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg~v~~~d~~~-~---~~~~~~~~~~~~i~~~~~~~~~~~l~~ 282 (430)
.. ..-...|...+|.|.+..+.+..+. ..++.+|...+ . +.+..+. ....+.+.|+|.|+++++
T Consensus 440 e~--------velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvv 509 (698)
T KOG2314|consen 440 EV--------VELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVV 509 (698)
T ss_pred ee--------eecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEEE
Confidence 21 1223568899999955554444433 35788888773 2 2333443 245788999999999887
Q ss_pred Eec--CCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccC------CcEEEEEcCCCCeeccccccc
Q 014125 283 GGR--KDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQD------GLVHIYDLQTGKWISGFQAAA 354 (430)
Q Consensus 283 ~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~~ 354 (430)
++- ..|.+.++|+....... .. .......+.+.|.|.|+|+++++.- .--++|+.. |++++.- --
T Consensus 510 a~l~s~~g~l~F~D~~~a~~k~---~~-~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfq-Grll~~~--~i 582 (698)
T KOG2314|consen 510 AALVSRRGDLEFYDTDYADLKD---TA-SPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQ-GRLLKED--II 582 (698)
T ss_pred EEecccccceEEEecchhhhhh---cc-CccccccccceECCCCCEEEEeeehhhhccccceEEEEee-cHHHHHH--HH
Confidence 652 47899999987421111 11 1222345679999999999999863 335556555 2222110 01
Q ss_pred CCeeEEEEcCCCcEEEE
Q 014125 355 DTVNGFSFHPFLPMAAS 371 (430)
Q Consensus 355 ~~v~~~~~~~~~~~l~s 371 (430)
+....+.|.|.-+.+++
T Consensus 583 ~~f~qF~WRPRPps~LS 599 (698)
T KOG2314|consen 583 DRFKQFLWRPRPPSLLS 599 (698)
T ss_pred HHHHhhccCCCCCcccC
Confidence 23345677776665554
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.4e-05 Score=67.33 Aligned_cols=221 Identities=17% Similarity=0.205 Sum_probs=132.8
Q ss_pred EEEECc-CCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEE
Q 014125 65 GIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFAS 143 (430)
Q Consensus 65 ~~~~sp-~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 143 (430)
++.|.+ ++.++++--..+.|..|+..++... ...... ...+++. .+++ .|+.
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~-------------------~~~~~~-~~G~~~~------~~~g-~l~v 56 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE-------------------VIDLPG-PNGMAFD------RPDG-RLYV 56 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEE-------------------EEESSS-EEEEEEE------CTTS-EEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEE-------------------EEecCC-CceEEEE------ccCC-EEEE
Confidence 578888 7778888778899999998765321 111112 3444442 1344 4555
Q ss_pred EeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcC---------CeEEEEEcCCCCCcccccccc
Q 014125 144 TTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYN---------KSVRVFDVHRPGRDFEKYSTL 214 (430)
Q Consensus 144 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d---------~~i~v~d~~~~~~~~~~~~~~ 214 (430)
+...+ +.++|+.+++.................+.+++.|+|.+.++... +.|..++.. +. ... .
T Consensus 57 ~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~--~~-~~~---~ 129 (246)
T PF08450_consen 57 ADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD--GK-VTV---V 129 (246)
T ss_dssp EETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT--SE-EEE---E
T ss_pred EEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC--Ce-EEE---E
Confidence 55555 66669998876555554222112347889999999997775421 446666654 11 111 1
Q ss_pred cCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCcee-------eEEeeccccCeEEEEEccCCCEEEEEecCC
Q 014125 215 KGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL-------LYVLHGQEGGVTHVQFSRDGNYLYTGGRKD 287 (430)
Q Consensus 215 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~-------~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d 287 (430)
...-.....++|+|++..++++-+..+.|..|++..... ...+....+..-.+++..+|+..++.. ..
T Consensus 130 ----~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~-~~ 204 (246)
T PF08450_consen 130 ----ADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADW-GG 204 (246)
T ss_dssp ----EEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEE-TT
T ss_pred ----ecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEc-CC
Confidence 111234689999997666677888899999999863221 112222223478899999998766666 79
Q ss_pred CeEEEEeCCCCceEEEEeecccCCccceEEEEEc-CCCCEEEE
Q 014125 288 PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIE-PSGRHLGT 329 (430)
Q Consensus 288 ~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~ 329 (430)
+.|.+++.+ +. ....+.. ....+++++|. ++.+.|+.
T Consensus 205 ~~I~~~~p~-G~-~~~~i~~---p~~~~t~~~fgg~~~~~L~v 242 (246)
T PF08450_consen 205 GRIVVFDPD-GK-LLREIEL---PVPRPTNCAFGGPDGKTLYV 242 (246)
T ss_dssp TEEEEEETT-SC-EEEEEE----SSSSEEEEEEESTTSSEEEE
T ss_pred CEEEEECCC-cc-EEEEEcC---CCCCEEEEEEECCCCCEEEE
Confidence 999999988 43 3323321 23478899994 56555544
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.86 E-value=6.5e-06 Score=68.84 Aligned_cols=218 Identities=14% Similarity=0.103 Sum_probs=132.7
Q ss_pred ceEEEEECCCCc-EEEEE-c-CCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEe-----cCCCe
Q 014125 175 AAFSVAFNPTGT-KIFAG-Y-NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIG-----SYSQT 246 (430)
Q Consensus 175 ~v~~~~~~~~~~-~l~~~-~-d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-----~~dg~ 246 (430)
....++.+|... .++.+ . .....+||..++............++.+| -.|+|++. +|++. ...|.
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGH------g~fs~dG~-~LytTEnd~~~g~G~ 78 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGH------GVFSPDGR-LLYTTENDYETGRGV 78 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecC------EEEcCCCC-EEEEeccccCCCcEE
Confidence 345688888554 44445 3 45688999987544322222222233333 58999554 55554 33588
Q ss_pred EEEEEcC-CceeeEEeeccccCeEEEEEccCCCEEEEEec-----------------CCCeEEEEeCCCCceEEEEeecc
Q 014125 247 SAIYRED-NMELLYVLHGQEGGVTHVQFSRDGNYLYTGGR-----------------KDPYILCWDLRKAVQVVYKLYRS 308 (430)
Q Consensus 247 v~~~d~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----------------~d~~i~i~d~~~~~~~~~~~~~~ 308 (430)
|-|||.. +.+.+..+..|.-.-..+.+.|||+.|+++.. ++..+...|..++..........
T Consensus 79 IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~ 158 (305)
T PF07433_consen 79 IGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPP 158 (305)
T ss_pred EEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCc
Confidence 9999998 66778888877767788999999988777641 23345555666664332222222
Q ss_pred cCCccceEEEEEcCCCCEEEEEccCCc-------EEEEEcCCCCeeccc-------ccccCCeeEEEEcCCCcEEEEeeC
Q 014125 309 SEHTNQRILFDIEPSGRHLGTGGQDGL-------VHIYDLQTGKWISGF-------QAAADTVNGFSFHPFLPMAASSSG 374 (430)
Q Consensus 309 ~~~~~~v~~~~~~~~~~~l~~~~~dg~-------i~vwd~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~s~~~ 374 (430)
..|...+..+++.++|..++..-..|. |-+++.. +.+..+ ..-.+-+-+|++++++.++++++-
T Consensus 159 ~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsP 236 (305)
T PF07433_consen 159 DLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSP 236 (305)
T ss_pred cccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC--CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECC
Confidence 446778999999999887766554432 4444433 222222 234457899999999987766654
Q ss_pred CceeeecCCCccccccCCCcEEEEeecccccccccCCCCccee
Q 014125 375 HRRFPVDDFEDLHLSGDENCVSVWSFLYASMMENADGINGCEF 417 (430)
Q Consensus 375 d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~ 417 (430)
..+++.+||..++.++....-...|.+
T Consensus 237 ----------------rGg~~~~~d~~tg~~~~~~~l~D~cGv 263 (305)
T PF07433_consen 237 ----------------RGGRVAVWDAATGRLLGSVPLPDACGV 263 (305)
T ss_pred ----------------CCCEEEEEECCCCCEeeccccCceeee
Confidence 235555565555555555544444443
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.3e-09 Score=86.47 Aligned_cols=136 Identities=16% Similarity=0.157 Sum_probs=96.9
Q ss_pred EEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCc----eEEEEeecccCCccc
Q 014125 239 AIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAV----QVVYKLYRSSEHTNQ 314 (430)
Q Consensus 239 ~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~----~~~~~~~~~~~~~~~ 314 (430)
++.+.+..|-+-|+.++... .+. ..+.|.++.|...++.++.|+ ..|.|..+|++... .....+ .|.+.
T Consensus 228 fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~Gc-RngeI~~iDLR~rnqG~~~~a~rl----yh~Ss 300 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGC-RNGEIFVIDLRCRNQGNGWCAQRL----YHDSS 300 (425)
T ss_pred ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecc-cCCcEEEEEeeecccCCCcceEEE----EcCcc
Confidence 44555777888888876433 333 467899999999899999999 99999999999762 222222 47788
Q ss_pred eEEEEEcC-CCCEEEEEccCCcEEEEEcCCCCe---ecccccccCCeeEEE--EcCCCcEEEEeeCCceeeec
Q 014125 315 RILFDIEP-SGRHLGTGGQDGLVHIYDLQTGKW---ISGFQAAADTVNGFS--FHPFLPMAASSSGHRRFPVD 381 (430)
Q Consensus 315 v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~---~~~~~~~~~~v~~~~--~~~~~~~l~s~~~d~~~~vw 381 (430)
|+++..-. ++++|++.+.+|.|++||++--+. +.++.+|-..-.-+- .++....+++++.|...+||
T Consensus 301 vtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiW 373 (425)
T KOG2695|consen 301 VTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIW 373 (425)
T ss_pred hhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEE
Confidence 88877665 678999999999999999987666 778888865433332 34455566666544444444
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.9e-07 Score=85.50 Aligned_cols=178 Identities=16% Similarity=0.223 Sum_probs=123.2
Q ss_pred cEEEEEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccc
Q 014125 186 TKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE 265 (430)
Q Consensus 186 ~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~ 265 (430)
.++.+|....+..+|+++.... ....-..+.+.-|.. +++.+.+|...|+|.+-|.++.+.+.++.+|.
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~--------r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs 217 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKET--------RTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHS 217 (1118)
T ss_pred ceeecchhhheeeeecccceee--------eeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccc
Confidence 3444666777888888763221 111111223555555 56699999999999999999999999999999
Q ss_pred cCeEEEEEccCCCEEEEEec--------CCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCC-CCEEEEEccCCcE
Q 014125 266 GGVTHVQFSRDGNYLYTGGR--------KDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPS-GRHLGTGGQDGLV 336 (430)
Q Consensus 266 ~~i~~~~~~~~~~~l~~~~~--------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i 336 (430)
+.|..+.. .|+.|+++|- .|.-|++||+|..+... ++ .-+ ....-+.|+|. ...+++.+..|..
T Consensus 218 ~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~-PI---~~~-~~P~flrf~Psl~t~~~V~S~sGq~ 290 (1118)
T KOG1275|consen 218 GSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALS-PI---QFP-YGPQFLRFHPSLTTRLAVTSQSGQF 290 (1118)
T ss_pred cceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccC-Cc---ccc-cCchhhhhcccccceEEEEecccce
Confidence 99886655 7888888872 35678999999864332 11 111 11234677775 3568888889999
Q ss_pred EEEEcCCC-Ce---ecccccccCCeeEEEEcCCCcEEEEeeCCceeeec
Q 014125 337 HIYDLQTG-KW---ISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVD 381 (430)
Q Consensus 337 ~vwd~~~~-~~---~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw 381 (430)
.+-|..+. .+ ++.+..-...+.++.+++++..++.+..+|.|.+|
T Consensus 291 q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~w 339 (1118)
T KOG1275|consen 291 QFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLW 339 (1118)
T ss_pred eeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeee
Confidence 99984321 22 22233334459999999999999999988888877
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.2e-08 Score=56.28 Aligned_cols=39 Identities=28% Similarity=0.610 Sum_probs=36.5
Q ss_pred ceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEe
Q 014125 255 MELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWD 294 (430)
Q Consensus 255 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d 294 (430)
++++..+.+|.+.|++++|+|++.+|++++ .|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~-~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGS-SDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEE-TTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeC-CCCEEEEEC
Confidence 467889999999999999999999999999 999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.77 E-value=7.1e-06 Score=79.12 Aligned_cols=265 Identities=10% Similarity=0.112 Sum_probs=151.0
Q ss_pred CCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCc
Q 014125 60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC 139 (430)
Q Consensus 60 ~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (430)
.+.|.++.|..+++.++.+..+|.|.+-|..+... .....-...|.+++| +||+.
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~------------------eivg~vd~GI~aasw-------S~Dee 122 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLEL------------------EIVGNVDNGISAASW-------SPDEE 122 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccce------------------eeeeeccCceEEEee-------cCCCc
Confidence 36899999999999999999999999988775432 122223468999999 78999
Q ss_pred eEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccC--C
Q 014125 140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKG--N 217 (430)
Q Consensus 140 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~--~ 217 (430)
.++..+..+++.+-.- +-.++.....+. .-.+.++++-+|....=.-+.-..+............ .
T Consensus 123 ~l~liT~~~tll~mT~-~f~~i~E~~L~~-----------d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~ 190 (1265)
T KOG1920|consen 123 LLALITGRQTLLFMTK-DFEPIAEKPLDA-----------DDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALE 190 (1265)
T ss_pred EEEEEeCCcEEEEEec-cccchhcccccc-----------ccccccccceecccccceeeecchhhhccccccccccccc
Confidence 9999988887766442 222222222111 1122233333443221111111100000000000000 0
Q ss_pred CCCCCcceEEEEEcCCCCceEEEe-----cCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEec--CCCeE
Q 014125 218 KEGQAGIMSAIAFSPTHTGMLAIG-----SYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGR--KDPYI 290 (430)
Q Consensus 218 ~~~~~~~v~~~~~~~~~~~~l~~~-----~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--~d~~i 290 (430)
.....+.=+++.|-- ++.++|+. .....|++||.+ +..-..-....+--.+++|-|.|..+++... .|+.|
T Consensus 191 ~~~~~~~~~~IsWRg-Dg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~I 268 (1265)
T KOG1920|consen 191 QIEQDDHKTSISWRG-DGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDI 268 (1265)
T ss_pred chhhccCCceEEEcc-CCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcE
Confidence 001112235688987 55577762 223789999987 4433333333444578999999999888652 45679
Q ss_pred EEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEE---EccCCcEEEEEcCCCCe--ecccccccCCeeEEEEcCC
Q 014125 291 LCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGT---GGQDGLVHIYDLQTGKW--ISGFQAAADTVNGFSFHPF 365 (430)
Q Consensus 291 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~---~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~ 365 (430)
.+|.-+.-..-...+ ........+..++|+.++..|++ ......|++|-+.+... .+.+....... +.|+|.
T Consensus 269 vffErNGL~hg~f~l-~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~ 345 (1265)
T KOG1920|consen 269 VFFERNGLRHGEFVL-PFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPV 345 (1265)
T ss_pred EEEecCCcccccccc-CCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCC
Confidence 998866543221111 11223334889999999999887 44555699999887543 22333222222 788884
Q ss_pred C
Q 014125 366 L 366 (430)
Q Consensus 366 ~ 366 (430)
.
T Consensus 346 ~ 346 (1265)
T KOG1920|consen 346 T 346 (1265)
T ss_pred C
Confidence 3
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.76 E-value=7.4e-06 Score=68.82 Aligned_cols=216 Identities=15% Similarity=0.107 Sum_probs=120.9
Q ss_pred CCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceE
Q 014125 147 DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMS 226 (430)
Q Consensus 147 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~ 226 (430)
+|+|..||..+|+.+........ .....+.....++..++++.++.|..||..++...+... +.... ...
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~--~~~~~---~~~-- 71 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPG---IGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFD--LPGPI---SGA-- 71 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSS---CSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEE--CSSCG---GSG--
T ss_pred CCEEEEEECCCCCEEEEEECCCC---CCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEee--ccccc---cce--
Confidence 68899999999999888765221 112222233334555556699999999997754322211 11110 011
Q ss_pred EEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEe-eccc---cCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEE
Q 014125 227 AIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVL-HGQE---GGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVV 302 (430)
Q Consensus 227 ~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~-~~~~---~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~ 302 (430)
... .+..+++++.++.++.+|..+++.+... .... ...........+..++++. .++.|..+|++++....
T Consensus 72 -~~~---~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~l~~~d~~tG~~~w 146 (238)
T PF13360_consen 72 -PVV---DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGT-SSGKLVALDPKTGKLLW 146 (238)
T ss_dssp -EEE---ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEE-TCSEEEEEETTTTEEEE
T ss_pred -eee---cccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEe-ccCcEEEEecCCCcEEE
Confidence 111 2336666778889999999999988874 3221 1122233333477888888 79999999999986654
Q ss_pred EEeecccCCccc------eEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCc
Q 014125 303 YKLYRSSEHTNQ------RILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHR 376 (430)
Q Consensus 303 ~~~~~~~~~~~~------v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~ 376 (430)
............ +..-....++ .++.++.++.+.-+|+.+++.+.... ...+..+ ..+.+..|+.++.++
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~ 222 (238)
T PF13360_consen 147 KYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDG 222 (238)
T ss_dssp EEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECEC-EECCCTEEEEEETTT
T ss_pred EeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec--CCCccCC-ceeeCCEEEEEeCCC
Confidence 433211111111 1222222344 77777777764444999998664222 2223321 345666666665444
Q ss_pred eeeec
Q 014125 377 RFPVD 381 (430)
Q Consensus 377 ~~~vw 381 (430)
.+..+
T Consensus 223 ~l~~~ 227 (238)
T PF13360_consen 223 RLYAL 227 (238)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 33333
|
... |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.76 E-value=9.4e-06 Score=74.44 Aligned_cols=210 Identities=13% Similarity=0.076 Sum_probs=131.1
Q ss_pred cCCCCceEEEE-eCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cC----CeEEEEEcCCCCCc
Q 014125 134 SDPTSCVFAST-TRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN----KSVRVFDVHRPGRD 207 (430)
Q Consensus 134 ~~~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d----~~i~v~d~~~~~~~ 207 (430)
+++||+.+... -..+.+.+.|.++.+...++.... ....+.++|+|++++++ .+ .++...+... .
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg------npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e--~- 270 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG------NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAE--R- 270 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCC------CcccceECCCCCEEEEeccCcccCcceeeecccc--C-
Confidence 36788766433 335778889999887777766544 33467899999998854 22 2232222211 0
Q ss_pred ccccccccCCCCCCCcceEEEEE--------cCCCCceEEEecCCCeEEEEEcCC-----ceeeEEeeccccCeEEEEEc
Q 014125 208 FEKYSTLKGNKEGQAGIMSAIAF--------SPTHTGMLAIGSYSQTSAIYREDN-----MELLYVLHGQEGGVTHVQFS 274 (430)
Q Consensus 208 ~~~~~~~~~~~~~~~~~v~~~~~--------~~~~~~~l~~~~~dg~v~~~d~~~-----~~~~~~~~~~~~~i~~~~~~ 274 (430)
. ..+.| .+++. .... .++.|.+.|.++ .+.+..+. -......+.++
T Consensus 271 ---------------d--~~vvfni~~iea~vkdGK-~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vS 329 (635)
T PRK02888 271 ---------------D--WVVVFNIARIEEAVKAGK-FKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTS 329 (635)
T ss_pred ---------------c--eEEEEchHHHHHhhhCCC-EEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEEC
Confidence 0 22222 23233 3333 367899999988 34444444 44567899999
Q ss_pred cCCCEEEEEecCCCeEEEEeCCCCceEE-------EEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCC----
Q 014125 275 RDGNYLYTGGRKDPYILCWDLRKAVQVV-------YKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQT---- 343 (430)
Q Consensus 275 ~~~~~l~~~~~~d~~i~i~d~~~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~---- 343 (430)
|||+++++++..+++|.+.|+.+..... ..+.....-.......+|+++|....+-.-|..|..||+.+
T Consensus 330 PDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~ 409 (635)
T PRK02888 330 PDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRA 409 (635)
T ss_pred CCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHHHHHH
Confidence 9999999998789999999998754210 00000011233445678999998888888999999999876
Q ss_pred ------CCeecccccccCC-----eeEEEEcCCCcEEEEee
Q 014125 344 ------GKWISGFQAAADT-----VNGFSFHPFLPMAASSS 373 (430)
Q Consensus 344 ------~~~~~~~~~~~~~-----v~~~~~~~~~~~l~s~~ 373 (430)
...+..+..|-.+ ..+=.-.|+|++|++..
T Consensus 410 ~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 410 YKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred hccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEcc
Confidence 2334444333222 12222367888887764
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.75 E-value=6.4e-06 Score=73.99 Aligned_cols=186 Identities=21% Similarity=0.159 Sum_probs=115.9
Q ss_pred ceEEEEECCCCcEEE-EE---cC-CeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCe--E
Q 014125 175 AAFSVAFNPTGTKIF-AG---YN-KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQT--S 247 (430)
Q Consensus 175 ~v~~~~~~~~~~~l~-~~---~d-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--v 247 (430)
.+..-+|+|++..++ .. .. ..+.++++..+....... ..+.-..-.|+|++..++++...||. |
T Consensus 194 ~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~---------~~g~~~~P~fspDG~~l~f~~~rdg~~~i 264 (425)
T COG0823 194 LILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN---------FNGNNGAPAFSPDGSKLAFSSSRDGSPDI 264 (425)
T ss_pred ceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec---------cCCccCCccCCCCCCEEEEEECCCCCccE
Confidence 566778999998776 33 22 358999998754322111 12233456899988888888888876 5
Q ss_pred EEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEE--EeCCCCceEEEEeecccCCccceEEEEEcCCCC
Q 014125 248 AIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILC--WDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGR 325 (430)
Q Consensus 248 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i--~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 325 (430)
+++|+..+... .+..-.+.-..-.|+|||+.|+-.+...|.-.| +++..... ..+.. ..... ..-.|+|+|+
T Consensus 265 y~~dl~~~~~~-~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~--~riT~-~~~~~--~~p~~SpdG~ 338 (425)
T COG0823 265 YLMDLDGKNLP-RLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV--TRLTF-SGGGN--SNPVWSPDGD 338 (425)
T ss_pred EEEcCCCCcce-ecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce--eEeec-cCCCC--cCccCCCCCC
Confidence 56677766633 344333444577899999999888756665444 45554432 22221 11111 1678999999
Q ss_pred EEEEEcc-CCc--EEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCc
Q 014125 326 HLGTGGQ-DGL--VHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHR 376 (430)
Q Consensus 326 ~l~~~~~-dg~--i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~ 376 (430)
+|+..+. +|. |.+.|+.++..+..+. +......-.|.|++..+...+..+
T Consensus 339 ~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s~~~ 391 (425)
T COG0823 339 KIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSSGQG 391 (425)
T ss_pred EEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEeccCC
Confidence 9887664 344 6777776665433333 333445567888888777766543
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.3e-05 Score=64.88 Aligned_cols=255 Identities=13% Similarity=0.129 Sum_probs=144.2
Q ss_pred EEEECcCCceEEEecC----------CCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCcc
Q 014125 65 GIKWSPDGSSFLTSSE----------DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS 134 (430)
Q Consensus 65 ~~~~sp~~~~l~s~~~----------dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 134 (430)
.+..|||++.+++++. .-.|.+||..+.....++..+. ......+. .+....+
T Consensus 40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~----------------k~R~~~~~-~~~~~~l 102 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPP----------------KPRAQVVP-YKNMFAL 102 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETT----------------S-B--BS---GGGEEE
T ss_pred ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCC----------------cchheecc-cccceEE
Confidence 4678999998887542 3369999998765433322221 10111111 2233344
Q ss_pred CCCCceEEEEeC--CCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccc
Q 014125 135 DPTSCVFASTTR--DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYS 212 (430)
Q Consensus 135 ~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~ 212 (430)
+.|+++++.... -..|.|.|+..++.+..+..... ..+--+++..+...|.||.+.-..+...++......
T Consensus 103 s~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC-------~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t 175 (342)
T PF06433_consen 103 SADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGC-------WLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKST 175 (342)
T ss_dssp -TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSE-------EEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEE
T ss_pred ccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCE-------EEEEecCCCceEEEecCCceEEEEECCCCCEeEeec
Confidence 778888776643 45699999999998888776541 112112233455578999999999987665442211
Q ss_pred cccCCCCCCCcce-EEEEEcCCCCceEEEecCCCeEEEEEcCCceee--EEeec----------cccCeEEEEEccCCCE
Q 014125 213 TLKGNKEGQAGIM-SAIAFSPTHTGMLAIGSYSQTSAIYREDNMELL--YVLHG----------QEGGVTHVQFSRDGNY 279 (430)
Q Consensus 213 ~~~~~~~~~~~~v-~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~--~~~~~----------~~~~i~~~~~~~~~~~ 279 (430)
. .+.....++ ..-++.. .+..++.-+.+|.|+-.|+...... ..+.. -.+.-.-+++++....
T Consensus 176 ~---~F~~~~dp~f~~~~~~~-~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~r 251 (342)
T PF06433_consen 176 K---VFDPDDDPLFEHPAYSR-DGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGR 251 (342)
T ss_dssp E---ESSTTTS-B-S--EEET-TTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTE
T ss_pred c---ccCCCCcccccccceEC-CCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCe
Confidence 1 112222222 2333443 3445566788999999988765422 12210 1233455788876666
Q ss_pred EEEEec--C-----C--CeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCC-EEEEE-ccCCcEEEEEcCCCCeec
Q 014125 280 LYTGGR--K-----D--PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGR-HLGTG-GQDGLVHIYDLQTGKWIS 348 (430)
Q Consensus 280 l~~~~~--~-----d--~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~-~~dg~i~vwd~~~~~~~~ 348 (430)
|++.-- . | ..|-++|+.+.+... ++. -..++.+++.+.+.+ +|++. ..++.+.+||..+|+.+.
T Consensus 252 lyvLMh~g~~gsHKdpgteVWv~D~~t~krv~-Ri~----l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~ 326 (342)
T PF06433_consen 252 LYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVA-RIP----LEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVR 326 (342)
T ss_dssp EEEEEEE--TT-TTS-EEEEEEEETTTTEEEE-EEE----EEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEE
T ss_pred EEEEecCCCCCCccCCceEEEEEECCCCeEEE-EEe----CCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEe
Confidence 665430 1 1 157788888875543 321 123466888888765 55444 457899999999999988
Q ss_pred cccc
Q 014125 349 GFQA 352 (430)
Q Consensus 349 ~~~~ 352 (430)
.+..
T Consensus 327 ~~~~ 330 (342)
T PF06433_consen 327 SIEQ 330 (342)
T ss_dssp EE--
T ss_pred ehhc
Confidence 8764
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.71 E-value=9.2e-06 Score=75.51 Aligned_cols=208 Identities=12% Similarity=0.164 Sum_probs=129.9
Q ss_pred CCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCC-cEEE-EEcC-C----eEEEEEcCCCCCc
Q 014125 135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG-TKIF-AGYN-K----SVRVFDVHRPGRD 207 (430)
Q Consensus 135 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~-~~~d-~----~i~v~d~~~~~~~ 207 (430)
++.+..++.|+.+|.|.+.+-. -+....++.... .+...-+.-++ .+|+ .+.| . .|++|+++...+.
T Consensus 32 ~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~-----siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n 105 (933)
T KOG2114|consen 32 SSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQ-----SIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN 105 (933)
T ss_pred cCCCceEEEeeccccEEEeccc-ceeeehheecch-----hhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence 6678899999999998887732 223345555443 32222333344 4555 4533 2 6999999864322
Q ss_pred c--ccc---ccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcC---C-ceeeEEeeccccCeEEEEEccCCC
Q 014125 208 F--EKY---STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED---N-MELLYVLHGQEGGVTHVQFSRDGN 278 (430)
Q Consensus 208 ~--~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~---~-~~~~~~~~~~~~~i~~~~~~~~~~ 278 (430)
. ... ..........+.++.+++.+. +-..+|+|-.+|.|..+.-+ . +....-......+|+.+++..+++
T Consensus 106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~-~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~ 184 (933)
T KOG2114|consen 106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSE-DLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGK 184 (933)
T ss_pred CCcceeeeeeeeccCCCCCCCcceEEEEEc-cccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCc
Confidence 1 111 111112223467889999998 57799999999999998522 1 111222223456999999999888
Q ss_pred E-EEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccc-cccC
Q 014125 279 Y-LYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQ-AAAD 355 (430)
Q Consensus 279 ~-l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~ 355 (430)
. ++++ .-..|.+|.+.... +... ....+...+.|.++++....+++++.. -+.+|+.....+-..+. +|..
T Consensus 185 s~lFv~--Tt~~V~~y~l~gr~-p~~~--~ld~~G~~lnCss~~~~t~qfIca~~e-~l~fY~sd~~~~cfaf~~g~kk 257 (933)
T KOG2114|consen 185 SVLFVA--TTEQVMLYSLSGRT-PSLK--VLDNNGISLNCSSFSDGTYQFICAGSE-FLYFYDSDGRGPCFAFEVGEKK 257 (933)
T ss_pred eeEEEE--ecceeEEEEecCCC-ccee--eeccCCccceeeecCCCCccEEEecCc-eEEEEcCCCcceeeeecCCCeE
Confidence 7 3333 35689999998554 2222 125677788888888765535555443 59999998777666666 5553
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.2e-07 Score=85.24 Aligned_cols=184 Identities=14% Similarity=0.138 Sum_probs=132.8
Q ss_pred CCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCccccccccc
Q 014125 137 TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLK 215 (430)
Q Consensus 137 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~ 215 (430)
++..++.|+-...+..+|+.+.+..+....... .|.-+.. +++++.+| ..|+|.+-|.++ ....
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~-----~v~imR~--Nnr~lf~G~t~G~V~LrD~~s--------~~~i 210 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSAS-----GVTIMRY--NNRNLFCGDTRGTVFLRDPNS--------FETI 210 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCC-----ceEEEEe--cCcEEEeecccceEEeecCCc--------Ccee
Confidence 456788888888899999998887776655443 3444443 67788877 889999999876 3444
Q ss_pred CCCCCCCcceEEEEEcCCCCceEEEecC---------CCeEEEEEcCCceeeEEeeccccCeEEEEEccCC-CEEEEEec
Q 014125 216 GNKEGQAGIMSAIAFSPTHTGMLAIGSY---------SQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDG-NYLYTGGR 285 (430)
Q Consensus 216 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~---------dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~ 285 (430)
..+..|.+.+..+.. .+++|++++. |..|+|||++..+.+.-+.-+.++ .-+.|.|.- ..+++++
T Consensus 211 ht~~aHs~siSDfDv---~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S- 285 (1118)
T KOG1275|consen 211 HTFDAHSGSISDFDV---QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTS- 285 (1118)
T ss_pred eeeeccccceeeeec---cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEe-
Confidence 556788999988887 4557777654 445899999988877666655554 667888864 3566666
Q ss_pred CCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEE
Q 014125 286 KDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYD 340 (430)
Q Consensus 286 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd 340 (430)
..|...+-|..+-..+...........+.+..++++++|..|+.|..+|.|.+|.
T Consensus 286 ~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 286 QSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 8999999993322222111122244556699999999999999999999999997
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.2e-06 Score=80.42 Aligned_cols=183 Identities=12% Similarity=0.109 Sum_probs=124.8
Q ss_pred CCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCc
Q 014125 60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC 139 (430)
Q Consensus 60 ~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (430)
.+.++|++++ +++|+-|+.+|.|++++..... ...+.|... ..+|.
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~-------------------~~~~~~s~~-------------~~~Ge 84 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP-------------------KTNFDHSSS-------------ILEGE 84 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCcc-------------------ccccccccc-------------ccCCc
Confidence 5668888887 4899999999999999876431 011111111 34789
Q ss_pred eEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCC-----CcEEE-EEcCCeEEEEEcCCCCCccccccc
Q 014125 140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT-----GTKIF-AGYNKSVRVFDVHRPGRDFEKYST 213 (430)
Q Consensus 140 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~ 213 (430)
++++|+.||.|.|-.+-+.+....+.... ++.+++++|+ .+.++ +|.-| +.++.-+--+... .
T Consensus 85 y~asCS~DGkv~I~sl~~~~~~~~~df~r------piksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~----~ 153 (846)
T KOG2066|consen 85 YVASCSDDGKVVIGSLFTDDEITQYDFKR------PIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKD----S 153 (846)
T ss_pred eEEEecCCCcEEEeeccCCccceeEecCC------cceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCcc----c
Confidence 99999999999999998888777666554 8899999998 34455 45555 7776532211100 0
Q ss_pred ccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccC------eEEEEEccCCCEEEEEecCC
Q 014125 214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGG------VTHVQFSRDGNYLYTGGRKD 287 (430)
Q Consensus 214 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~------i~~~~~~~~~~~l~~~~~~d 287 (430)
. ......++|.++.|. ++++|-++.+| |++||..+.+.+..++..... -..+.|.++.+ |+ .| ..
T Consensus 154 v--~l~~~eG~I~~i~W~---g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LV-IG-W~ 224 (846)
T KOG2066|consen 154 V--VLSEGEGPIHSIKWR---GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LV-IG-WG 224 (846)
T ss_pred e--eeecCccceEEEEec---CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EE-Ee-cC
Confidence 0 224456889999994 55888877665 899999998877766543332 34577876654 33 34 56
Q ss_pred CeEEEEeCC
Q 014125 288 PYILCWDLR 296 (430)
Q Consensus 288 ~~i~i~d~~ 296 (430)
.+|++..++
T Consensus 225 d~v~i~~I~ 233 (846)
T KOG2066|consen 225 DSVKICSIK 233 (846)
T ss_pred CeEEEEEEe
Confidence 788888887
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.1e-05 Score=74.94 Aligned_cols=202 Identities=14% Similarity=0.171 Sum_probs=122.3
Q ss_pred EECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeC
Q 014125 67 KWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTR 146 (430)
Q Consensus 67 ~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 146 (430)
+|++.+..++.|+.+|.|.+.+-.-. ....+..+ ...+...-|. ..+.++|++.+.
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s~~-~~~~fqa~-----------------~~siv~~L~~------~~~~~~L~sv~E 85 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSSFQ-LIRGFQAY-----------------EQSIVQFLYI------LNKQNFLFSVGE 85 (933)
T ss_pred EEcCCCceEEEeeccccEEEecccce-eeehheec-----------------chhhhhHhhc------ccCceEEEEEee
Confidence 45778889999999999888764311 11111111 1221111221 223357777776
Q ss_pred CCc-----EEEEeccCC------ceeeeee--cccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccccc
Q 014125 147 DHP-----IHLWDATTG------LLRCTYR--AYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYS 212 (430)
Q Consensus 147 dg~-----i~vwd~~~~------~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~ 212 (430)
|+. +++|+++.- .+..... .+.......++.+++.+.+-+.+++| .+|.|..+.=+- .+...
T Consensus 86 d~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi----~RDrg 161 (933)
T KOG2114|consen 86 DEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDI----LRDRG 161 (933)
T ss_pred cCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcc----hhccc
Confidence 654 899998753 1221111 11222234578899999998899988 889988885321 11111
Q ss_pred cccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCcee-eEEeeccccCeEEEEEccCCCEEEEEecCCCeEE
Q 014125 213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL-LYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYIL 291 (430)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~ 291 (430)
.-.........+|+.+++..++...+++ ..-..|.+|.+....+ ...+..|..++.|..|++....+++++ +..+.
T Consensus 162 sr~~~~~~~~~pITgL~~~~d~~s~lFv-~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~--~e~l~ 238 (933)
T KOG2114|consen 162 SRQDYSHRGKEPITGLALRSDGKSVLFV-ATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG--SEFLY 238 (933)
T ss_pred cceeeeccCCCCceeeEEecCCceeEEE-EecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec--CceEE
Confidence 1111123345789999998866553333 3346789999874442 445777888999999987666566665 67899
Q ss_pred EEeCCCCc
Q 014125 292 CWDLRKAV 299 (430)
Q Consensus 292 i~d~~~~~ 299 (430)
+|+....+
T Consensus 239 fY~sd~~~ 246 (933)
T KOG2114|consen 239 FYDSDGRG 246 (933)
T ss_pred EEcCCCcc
Confidence 99987543
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.4e-07 Score=78.31 Aligned_cols=210 Identities=13% Similarity=0.103 Sum_probs=142.0
Q ss_pred ceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecC-CCeEEEEEc
Q 014125 175 AAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY-SQTSAIYRE 252 (430)
Q Consensus 175 ~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~v~~~d~ 252 (430)
.|+.+.-.. .+++. ++.||.++.|.-... ....+......|...+.+++.+- ++.++.+.+. |..++++|+
T Consensus 11 ~i~hv~~tk-a~fiiqASlDGh~KFWkKs~i-----sGvEfVKhFraHL~~I~sl~~S~-dg~L~~Sv~d~Dhs~KvfDv 83 (558)
T KOG0882|consen 11 VITHVFPTK-AKFIIQASLDGHKKFWKKSRI-----SGVEFVKHFRAHLGVILSLAVSY-DGWLFRSVEDPDHSVKVFDV 83 (558)
T ss_pred eeeeEeeeh-hheEEeeecchhhhhcCCCCc-----cceeehhhhHHHHHHHHhhhccc-cceeEeeccCcccceeEEEe
Confidence 455544433 34555 779999999975431 11334455677888889999888 6678888676 999999998
Q ss_pred CCceeeEEeec--cccCeEEEEEccCC--CEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEE
Q 014125 253 DNMELLYVLHG--QEGGVTHVQFSRDG--NYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLG 328 (430)
Q Consensus 253 ~~~~~~~~~~~--~~~~i~~~~~~~~~--~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 328 (430)
.+-..+..++. ..+.+.. ..+|.. ..|+++...++.+.++|-....+... ....-|..+|..+.+.|.+..++
T Consensus 84 En~DminmiKL~~lPg~a~w-v~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~--~fkklH~sPV~~i~y~qa~Ds~v 160 (558)
T KOG0882|consen 84 ENFDMINMIKLVDLPGFAEW-VTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDG--YFKKLHFSPVKKIRYNQAGDSAV 160 (558)
T ss_pred eccchhhhcccccCCCceEE-ecCCCCeeeeEEeecccCCCcEEECCcCCcCccc--eecccccCceEEEEeecccccee
Confidence 87655433331 1222221 122221 25666665889999999877653322 22256899999999999999999
Q ss_pred EEccCCcEEEEEcCC------CCeec---------ccccccCCeeEEEEcCCCcEEEEeeCCceeeecCCCccccccCCC
Q 014125 329 TGGQDGLVHIYDLQT------GKWIS---------GFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFEDLHLSGDEN 393 (430)
Q Consensus 329 ~~~~dg~i~vwd~~~------~~~~~---------~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~l~~~~~d~ 393 (430)
+....|.|.-|.... .+... .+.--.....++.|+|++..+.+-+ .|.
T Consensus 161 SiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~-----------------~Dr 223 (558)
T KOG0882|consen 161 SIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLN-----------------PDR 223 (558)
T ss_pred eccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccC-----------------ccc
Confidence 999999999999872 11211 2222344678999999888776665 678
Q ss_pred cEEEEeecccccccccCC
Q 014125 394 CVSVWSFLYASMMENADG 411 (430)
Q Consensus 394 ~i~~w~~~~~~~~~~~~~ 411 (430)
.||++.+.++++++.++-
T Consensus 224 kVR~F~~KtGklvqeiDE 241 (558)
T KOG0882|consen 224 KVRGFVFKTGKLVQEIDE 241 (558)
T ss_pred EEEEEEeccchhhhhhhc
Confidence 888888888887766654
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.60 E-value=5.8e-08 Score=89.78 Aligned_cols=181 Identities=17% Similarity=0.199 Sum_probs=127.9
Q ss_pred cceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCC-eEEEEE
Q 014125 174 TAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ-TSAIYR 251 (430)
Q Consensus 174 ~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~v~~~d 251 (430)
...+|++|+.+.++|+.| ..|.|++|++.++ .......+|..+++-+.-+.++..+|.+++... -..+|+
T Consensus 1102 ~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG--------~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~ 1173 (1516)
T KOG1832|consen 1102 ALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSG--------SMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWD 1173 (1516)
T ss_pred cceeeEEeecCCceEEeeeccceEEEEEccCc--------cccccccccccccccccccCCcceeeeeccccCchHHHhc
Confidence 377899999999999966 8999999999884 344455789999999999986665555555544 578899
Q ss_pred cCC-ceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEE
Q 014125 252 EDN-MELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTG 330 (430)
Q Consensus 252 ~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 330 (430)
+.+ +.+.+.+. .-.++.|+..-..-+.|+ ......+||+.+.......+....+....-+...|+|+..+++
T Consensus 1174 ~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt-~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl-- 1246 (1516)
T KOG1832|consen 1174 ASSTGGPRHSFD----EDKAVKFSNSLQFRALGT-EADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL-- 1246 (1516)
T ss_pred cccccCcccccc----ccceeehhhhHHHHHhcc-cccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe--
Confidence 865 33444443 346788887765555666 5677899999988654432322223333346789999988876
Q ss_pred ccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEee
Q 014125 331 GQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSS 373 (430)
Q Consensus 331 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 373 (430)
.|| .+||++..+.+..|......+ .-.|||.|.-++.-+
T Consensus 1247 -ndG--vLWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIINS 1285 (1516)
T KOG1832|consen 1247 -NDG--VLWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIINS 1285 (1516)
T ss_pred -eCc--eeeeeccHHHHhhhhhheecc-cccccCCCceEEeec
Confidence 566 479999888888776554322 236899998777655
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.60 E-value=0.0001 Score=60.96 Aligned_cols=212 Identities=15% Similarity=0.163 Sum_probs=111.8
Q ss_pred eecccCCCceeEEEECcCCc-eEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccC
Q 014125 54 RTSSIPNNFLKGIKWSPDGS-SFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS 132 (430)
Q Consensus 54 ~~~~~h~~~v~~~~~sp~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 132 (430)
+.+.+-.+.+..|+|+|+.+ ++++....+.|..++.+ ++.... ..+..-+..-.+++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~----------------i~l~g~~D~EgI~y----- 72 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRR----------------IPLDGFGDYEGITY----- 72 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEE----------------EE-SS-SSEEEEEE-----
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEE----------------EeCCCCCCceeEEE-----
Confidence 45556666799999999755 66667778888888764 332211 11222234555666
Q ss_pred ccCCCCceEEEEeCCCcEEEEeccCCc-e-----eeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCC--
Q 014125 133 ASDPTSCVFASTTRDHPIHLWDATTGL-L-----RCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHR-- 203 (430)
Q Consensus 133 ~~~~~~~~l~~~~~dg~i~vwd~~~~~-~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~-- 203 (430)
..++.++++.-+++.+.++++.... . ...+...........+-.++|+|.+..|++. ...-..+|.++.
T Consensus 73 --~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~ 150 (248)
T PF06977_consen 73 --LGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFP 150 (248)
T ss_dssp ---STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT
T ss_pred --ECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcccc
Confidence 3456666666668999999884321 1 1222221111233357799999987766644 555566776654
Q ss_pred CCCccccc--ccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccc---------cCeEEEE
Q 014125 204 PGRDFEKY--STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE---------GGVTHVQ 272 (430)
Q Consensus 204 ~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~---------~~i~~~~ 272 (430)
........ ..... .......+.+++++|..+.+++.+..+..|..+| .+|+++..+.-.. ...-.|+
T Consensus 151 ~~~~~~~~~~~~~~~-~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa 228 (248)
T PF06977_consen 151 GGFDLFVSDDQDLDD-DKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIA 228 (248)
T ss_dssp -SS--EEEE-HHHH--HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEE
T ss_pred Cccceeecccccccc-ccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEE
Confidence 11111100 00110 1223345899999998888999999999999999 5677665544221 2467899
Q ss_pred EccCCCEEEEEecCCCeEEEE
Q 014125 273 FSRDGNYLYTGGRKDPYILCW 293 (430)
Q Consensus 273 ~~~~~~~l~~~~~~d~~i~i~ 293 (430)
|.++|+ |+..+ .-+..+.|
T Consensus 229 ~d~~G~-LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 229 FDPDGN-LYIVS-EPNLFYRF 247 (248)
T ss_dssp E-TT---EEEEE-TTTEEEEE
T ss_pred ECCCCC-EEEEc-CCceEEEe
Confidence 999986 55555 66665554
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.58 E-value=8.2e-08 Score=85.66 Aligned_cols=203 Identities=15% Similarity=0.197 Sum_probs=128.7
Q ss_pred ceeEEEECcC--CceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCc
Q 014125 62 FLKGIKWSPD--GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC 139 (430)
Q Consensus 62 ~v~~~~~sp~--~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (430)
.+.|++++-+ ...++.|..+|.|.+-.+....- ....+.-.+..+.++++|.+. |.+
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hd---------------Ss~E~tp~~ar~Ct~lAwneL------Dtn 116 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHD---------------SSAEVTPGYARPCTSLAWNEL------DTN 116 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCccc---------------ccceecccccccccccccccc------cHH
Confidence 4777777654 34788899999999987764311 112233345568899999764 566
Q ss_pred eEEEEe----CCCcEEEEeccCC--ceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccccc
Q 014125 140 VFASTT----RDHPIHLWDATTG--LLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYS 212 (430)
Q Consensus 140 ~l~~~~----~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~ 212 (430)
.||.|- .|..+.|||+.++ .+........ +......+++|..+.+++.+| ....++++|++.......
T Consensus 117 ~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~--~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~--- 191 (783)
T KOG1008|consen 117 HLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSS--STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVS--- 191 (783)
T ss_pred HHHhhhhhhcccCCccceecccccCCCcccccccc--ccccCccccccccCcchhhcccccchhhhhhhhhhhhhhh---
Confidence 777773 3667999999887 2222222111 111245588898888888777 677999999985321111
Q ss_pred cccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEE-cCCce-eeEEeeccc----cCeEEEEEccCCC-EEEEEec
Q 014125 213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYR-EDNME-LLYVLHGQE----GGVTHVQFSRDGN-YLYTGGR 285 (430)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d-~~~~~-~~~~~~~~~----~~i~~~~~~~~~~-~l~~~~~ 285 (430)
.-.+..+..+.+.|...+++++.. ||.|.+|| .+.-+ ++..+...+ ..+..++|.|... .+++..+
T Consensus 192 ------svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~R 264 (783)
T KOG1008|consen 192 ------SVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSR 264 (783)
T ss_pred ------hhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhcc
Confidence 111224666778886666666555 99999999 44332 333332122 2489999999654 4555555
Q ss_pred CCCeEEEEeCCC
Q 014125 286 KDPYILCWDLRK 297 (430)
Q Consensus 286 ~d~~i~i~d~~~ 297 (430)
..++|++||+..
T Consensus 265 dS~tIrlydi~~ 276 (783)
T KOG1008|consen 265 DSITIRLYDICV 276 (783)
T ss_pred CcceEEEecccc
Confidence 778999999863
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.4e-06 Score=73.57 Aligned_cols=85 Identities=16% Similarity=0.282 Sum_probs=70.8
Q ss_pred CCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCC
Q 014125 217 NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR 296 (430)
Q Consensus 217 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~ 296 (430)
....+...|..++|+|....++..++.+.+|+|.|+++...+..+..+ ..+.+++|.-+....+.+|...|.|.+||++
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R 266 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMR 266 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEcc
Confidence 345667789999999977779999999999999999999998888877 7899999998766544444499999999999
Q ss_pred CCceEE
Q 014125 297 KAVQVV 302 (430)
Q Consensus 297 ~~~~~~ 302 (430)
......
T Consensus 267 ~~~~~~ 272 (463)
T KOG1645|consen 267 QPEGPL 272 (463)
T ss_pred CCCchH
Confidence 876543
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=98.55 E-value=9.1e-06 Score=77.33 Aligned_cols=147 Identities=14% Similarity=0.214 Sum_probs=100.9
Q ss_pred CceEEEE-eCCCcEEEEeccCCceeeeeecccccccccceEEEEECC------CCcEEEEEcCCeEEEEEcCCCCCcccc
Q 014125 138 SCVFAST-TRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNP------TGTKIFAGYNKSVRVFDVHRPGRDFEK 210 (430)
Q Consensus 138 ~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~~~l~~~~d~~i~v~d~~~~~~~~~~ 210 (430)
.++|+.. .....|+-.|++.|+.+..+..+... +|..++-.. ....+++-.++.+..||.+..+....
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~----~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v- 567 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDI----PVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLV- 567 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCc----ceeEecccccccccCCCceEEEECCCceEEeccCCCCCcee-
Confidence 3444433 34577999999999999999987642 233333211 12334444889999999997542211
Q ss_pred cccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeE
Q 014125 211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYI 290 (430)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i 290 (430)
.............+|++-+. ...||+|+.+|.|++||--..+....+.+...+|..|..+.||++|+++| +..|
T Consensus 568 --~~~~k~Y~~~~~Fs~~aTt~--~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc--~tyL 641 (794)
T PF08553_consen 568 --DSQSKQYSSKNNFSCFATTE--DGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC--KTYL 641 (794)
T ss_pred --eccccccccCCCceEEEecC--CceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee--cceE
Confidence 11111123345577887775 44899999999999999544444555667788999999999999999987 7788
Q ss_pred EEEeC
Q 014125 291 LCWDL 295 (430)
Q Consensus 291 ~i~d~ 295 (430)
.+++.
T Consensus 642 lLi~t 646 (794)
T PF08553_consen 642 LLIDT 646 (794)
T ss_pred EEEEE
Confidence 88875
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.2e-05 Score=74.86 Aligned_cols=237 Identities=13% Similarity=0.128 Sum_probs=131.7
Q ss_pred CeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEE
Q 014125 120 ESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRV 198 (430)
Q Consensus 120 ~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v 198 (430)
..|.++.| -.+++.++.+...|.|.+-|.++......-.. .. .|.+++|+||++.++ +....++.+
T Consensus 69 ~~i~s~~f-------l~d~~~i~v~~~~G~iilvd~et~~~eivg~v-d~-----GI~aaswS~Dee~l~liT~~~tll~ 135 (1265)
T KOG1920|consen 69 DEIVSVQF-------LADTNSICVITALGDIILVDPETLELEIVGNV-DN-----GISAASWSPDEELLALITGRQTLLF 135 (1265)
T ss_pred cceEEEEE-------ecccceEEEEecCCcEEEEcccccceeeeeec-cC-----ceEEEeecCCCcEEEEEeCCcEEEE
Confidence 36777777 55778899999999999999887654332222 22 889999999999998 555666655
Q ss_pred EEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCc-eeeEEeeccccCeEEEEEccCC
Q 014125 199 FDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-ELLYVLHGQEGGVTHVQFSRDG 277 (430)
Q Consensus 199 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~-~~~~~~~~~~~~i~~~~~~~~~ 277 (430)
-.-.- ..... ..+... ....+..-.+-|.. .... +-|+ .|.....+.... +.......+ ..=++|.|--||
T Consensus 136 mT~~f-~~i~E--~~L~~d-~~~~sk~v~VGwGr-keTq-frgs-~gr~~~~~~~~~ek~~~~~~~~-~~~~~IsWRgDg 207 (1265)
T KOG1920|consen 136 MTKDF-EPIAE--KPLDAD-DERKSKFVNVGWGR-KETQ-FRGS-EGRQAARQKIEKEKALEQIEQD-DHKTSISWRGDG 207 (1265)
T ss_pred Eeccc-cchhc--cccccc-cccccccceecccc-ccee-eecc-hhhhcccccccccccccchhhc-cCCceEEEccCC
Confidence 43211 00000 000000 00011122223322 1100 1111 111111111100 001111112 223679999999
Q ss_pred CEEEEEe---cCC-CeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEc---cCCcEEEEEcC---CCCee
Q 014125 278 NYLYTGG---RKD-PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGG---QDGLVHIYDLQ---TGKWI 347 (430)
Q Consensus 278 ~~l~~~~---~~d-~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~vwd~~---~~~~~ 347 (430)
+++++.. ..+ ..|++||-+..-.. ........-.+++|-|.|..+++-. .|+.|.++.-+ .|+..
T Consensus 208 ~~fAVs~~~~~~~~RkirV~drEg~Lns-----~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~ 282 (1265)
T KOG1920|consen 208 EYFAVSFVESETGTRKIRVYDREGALNS-----TSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFV 282 (1265)
T ss_pred cEEEEEEEeccCCceeEEEecccchhhc-----ccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccc
Confidence 9998833 134 79999998722111 0112223335699999999988764 45678888754 23333
Q ss_pred cccccccCCeeEEEEcCCCcEEEE---eeCCceeeecC
Q 014125 348 SGFQAAADTVNGFSFHPFLPMAAS---SSGHRRFPVDD 382 (430)
Q Consensus 348 ~~~~~~~~~v~~~~~~~~~~~l~s---~~~d~~~~vw~ 382 (430)
..+......|..++|+.++..|+. ......+.+|.
T Consensus 283 l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt 320 (1265)
T KOG1920|consen 283 LPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWT 320 (1265)
T ss_pred cCCcccccchheeeecCCCCceeeeecccccceEEEEE
Confidence 334444445999999999999988 55555699983
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=9.5e-06 Score=75.32 Aligned_cols=109 Identities=17% Similarity=0.199 Sum_probs=77.3
Q ss_pred eEEEECcCCceEEEecC----CCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCc
Q 014125 64 KGIKWSPDGSSFLTSSE----DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC 139 (430)
Q Consensus 64 ~~~~~sp~~~~l~s~~~----dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (430)
+-.+|+|...+||.++- .|+|.||- +++.... ...-.-.+.++||+| ..-
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr------------------~Vt~P~hatSLCWHp-------e~~ 72 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQR------------------DVTYPVHATSLCWHP-------EEF 72 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCc------------------ccccceehhhhccCh-------HHH
Confidence 34679998889888764 57888883 2222111 111112456799955 566
Q ss_pred eEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCC
Q 014125 140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHR 203 (430)
Q Consensus 140 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~ 203 (430)
.|+.|-.-|.+.+|...+.+.......|. .+|..+.|+++|..++++ .-|.|.+|....
T Consensus 73 vLa~gwe~g~~~v~~~~~~e~htv~~th~-----a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 73 VLAQGWEMGVSDVQKTNTTETHTVVETHP-----APIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred HHhhccccceeEEEecCCceeeeeccCCC-----CCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 89999999999999987765544444333 389999999999999977 679999998764
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.53 E-value=5.2e-05 Score=64.37 Aligned_cols=250 Identities=14% Similarity=0.144 Sum_probs=143.6
Q ss_pred CCCCceEEEEe----------CCCcEEEEeccCCceeeeeecccc--cccccceEEEEECCCCcEEEEE---cCCeEEEE
Q 014125 135 DPTSCVFASTT----------RDHPIHLWDATTGLLRCTYRAYDA--VDEITAAFSVAFNPTGTKIFAG---YNKSVRVF 199 (430)
Q Consensus 135 ~~~~~~l~~~~----------~dg~i~vwd~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~---~d~~i~v~ 199 (430)
+|+++.+++++ +.-.|.+||..+-.....+..+.. .........+.++.++++++.. --..|.|.
T Consensus 44 spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVV 123 (342)
T PF06433_consen 44 SPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVV 123 (342)
T ss_dssp -TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEE
T ss_pred CCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEE
Confidence 77888887653 345699999999888777666542 1111233456888899888743 45678888
Q ss_pred EcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcC-CceeeEEe----eccccCe-EEEEE
Q 014125 200 DVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED-NMELLYVL----HGQEGGV-THVQF 273 (430)
Q Consensus 200 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~-~~~~~~~~----~~~~~~i-~~~~~ 273 (430)
|+....- . ..+. ..-|...-|.++.-|.+-+.||.+.-..+. .|+...+. .....++ ..-++
T Consensus 124 Dl~~~kv-v---~ei~--------~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~ 191 (342)
T PF06433_consen 124 DLAAKKV-V---GEID--------TPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAY 191 (342)
T ss_dssp ETTTTEE-E---EEEE--------GTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EE
T ss_pred ECCCCce-e---eeec--------CCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccce
Confidence 8876311 0 1110 011222234345567888889999998887 34443221 1111222 23344
Q ss_pred ccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccC--------CccceEEEEEcCCCCEEEEEcc---CC-------c
Q 014125 274 SRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSE--------HTNQRILFDIEPSGRHLGTGGQ---DG-------L 335 (430)
Q Consensus 274 ~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~---dg-------~ 335 (430)
...+..++-.+ .+|.|+-.|+............... -.+.-.-+++++....|++.-. +| .
T Consensus 192 ~~~~~~~~F~S-y~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgte 270 (342)
T PF06433_consen 192 SRDGGRLYFVS-YEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTE 270 (342)
T ss_dssp ETTTTEEEEEB-TTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEE
T ss_pred ECCCCeEEEEe-cCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceE
Confidence 44444444455 7999999998876543322221110 0112223677765554443321 11 3
Q ss_pred EEEEEcCCCCeecccccccCCeeEEEEcCCCc-EEEEeeCCceeeecCCCccccccCCCcEEEEeecccccccccCCCCc
Q 014125 336 VHIYDLQTGKWISGFQAAADTVNGFSFHPFLP-MAASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYASMMENADGING 414 (430)
Q Consensus 336 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~ 414 (430)
|.++|+.+++.+..+.. ..++.+|+.+.+.+ +|.+.+ ..++.+.+||..+++++..+.++-.
T Consensus 271 VWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~----------------~~~~~l~v~D~~tGk~~~~~~~lG~ 333 (342)
T PF06433_consen 271 VWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALS----------------AGDGTLDVYDAATGKLVRSIEQLGE 333 (342)
T ss_dssp EEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEE----------------TTTTEEEEEETTT--EEEEE---SS
T ss_pred EEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEc----------------CCCCeEEEEeCcCCcEEeehhccCC
Confidence 88899999999998874 34678899988765 555443 2578899999999999888876543
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.7e-05 Score=69.34 Aligned_cols=261 Identities=9% Similarity=0.067 Sum_probs=129.6
Q ss_pred ceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcc------cccc-----------cc---ccc----c-cCcccceee-
Q 014125 62 FLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISY------DVNA-----------CS---LAK----D-QDSYEASLV- 115 (430)
Q Consensus 62 ~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~------~~~~-----------~~---~~~----~-~~~~~~~~~- 115 (430)
.|+.+.|+++..-|+.|...|.|.||.+..++... .... .. ... . .+...+...
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 48999999998899999999999999886554322 0000 00 000 0 001111111
Q ss_pred ecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeeccc---ccccccceEEEEEC-----CCC--
Q 014125 116 VTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYD---AVDEITAAFSVAFN-----PTG-- 185 (430)
Q Consensus 116 ~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~---~~~~~~~v~~~~~~-----~~~-- 185 (430)
....++|.+++. | +=..++.|..+|.+.|.|++....+..-.... .......++++.|. .|+
T Consensus 83 ~~~~g~vtal~~-------S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~yS 154 (395)
T PF08596_consen 83 DAKQGPVTALKN-------S-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYS 154 (395)
T ss_dssp ---S-SEEEEEE---------BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSE
T ss_pred eccCCcEeEEec-------C-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCccc
Confidence 123567888886 2 44589999999999999998777666533322 11122356677765 233
Q ss_pred -cEEEEE-cCCeEEEEEcCC-CCCcccccccccCCCCCCCcceEEEE-EcCCCC-------------------ceEEEec
Q 014125 186 -TKIFAG-YNKSVRVFDVHR-PGRDFEKYSTLKGNKEGQAGIMSAIA-FSPTHT-------------------GMLAIGS 242 (430)
Q Consensus 186 -~~l~~~-~d~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~-------------------~~l~~~~ 242 (430)
-.+++| ..|.+.+|.+.. .+..+.. .+......+.+++..+. ++.+.+ +-+++..
T Consensus 155 Si~L~vGTn~G~v~~fkIlp~~~g~f~v--~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv 232 (395)
T PF08596_consen 155 SICLLVGTNSGNVLTFKILPSSNGRFSV--QFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV 232 (395)
T ss_dssp EEEEEEEETTSEEEEEEEEE-GGG-EEE--EEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE
T ss_pred ceEEEEEeCCCCEEEEEEecCCCCceEE--EEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE
Confidence 344455 779999998852 1111110 11111123334444443 322111 1234445
Q ss_pred CCCeEEEEEcCCceeeEEeeccccCeEEEEEc-----cCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEE
Q 014125 243 YSQTSAIYREDNMELLYVLHGQEGGVTHVQFS-----RDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRIL 317 (430)
Q Consensus 243 ~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~ 317 (430)
.+..++++...+.+...+..........+.+- ..+..|++-. .+|.+++|.+..-+...............+..
T Consensus 233 Se~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~-~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ 311 (395)
T PF08596_consen 233 SESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLF-NNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSS 311 (395)
T ss_dssp -SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEE-TTSEEEEEETTT--EEEEEE-SS---HHHHTT
T ss_pred cccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEE-CCCcEEEEECCCchHhhcccCCCccccccccc
Confidence 57889999988776655444222233344452 2455677777 89999999998876554333222223334445
Q ss_pred EEEcCCCCEEEEEccC
Q 014125 318 FDIEPSGRHLGTGGQD 333 (430)
Q Consensus 318 ~~~~~~~~~l~~~~~d 333 (430)
..++++|..++-.+..
T Consensus 312 ssis~~Gdi~~~~gps 327 (395)
T PF08596_consen 312 SSISRNGDIFYWTGPS 327 (395)
T ss_dssp -EE-TTS-EEEE-SSS
T ss_pred cEECCCCCEEEEeCcc
Confidence 7778889877665543
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.00042 Score=55.73 Aligned_cols=101 Identities=12% Similarity=0.008 Sum_probs=64.2
Q ss_pred CceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEE
Q 014125 72 GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIH 151 (430)
Q Consensus 72 ~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 151 (430)
|++++.|...|.+++.+.+++.+...+.... .-.+... ..+++.++..|+.|+..+
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~----------------~vk~~a~--------~d~~~glIycgshd~~~y 118 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILE----------------TVKVRAQ--------CDFDGGLIYCGSHDGNFY 118 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeehh----------------hhccceE--------EcCCCceEEEecCCCcEE
Confidence 5678889999999998888875432222211 0111111 156889999999999999
Q ss_pred EEeccCCceeeeeecccccccccceEEEEECC-CCcEEEEEcCCeEEEEEc
Q 014125 152 LWDATTGLLRCTYRAYDAVDEITAAFSVAFNP-TGTKIFAGYNKSVRVFDV 201 (430)
Q Consensus 152 vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~d~~i~v~d~ 201 (430)
..|..+..++...+.... ...+-+..| ++.+.++...|.+.--..
T Consensus 119 alD~~~~~cVykskcgG~-----~f~sP~i~~g~~sly~a~t~G~vlavt~ 164 (354)
T KOG4649|consen 119 ALDPKTYGCVYKSKCGGG-----TFVSPVIAPGDGSLYAAITAGAVLAVTK 164 (354)
T ss_pred EecccccceEEecccCCc-----eeccceecCCCceEEEEeccceEEEEcc
Confidence 999999888877655443 222344555 455555555555544433
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.45 E-value=9e-05 Score=68.24 Aligned_cols=149 Identities=12% Similarity=0.084 Sum_probs=94.0
Q ss_pred cCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEec-------------------------
Q 014125 231 SPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGR------------------------- 285 (430)
Q Consensus 231 ~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------------------------- 285 (430)
.|++..+....-..+.+.+.|..+.+....+.. .+....++++|+|+++++++.
T Consensus 201 pnDGk~l~~~~ey~~~vSvID~etmeV~~qV~V-dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~ 279 (635)
T PRK02888 201 PNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMV-DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA 279 (635)
T ss_pred CCCCCEeecccceeEEEEEEECccceEEEEEEe-CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH
Confidence 343333333344456778888887777666553 234567788888888877751
Q ss_pred --------------CCCeEEEEeCCC----CceEEEEeecccCCccceEEEEEcCCCCEEEEEcc-CCcEEEEEcCCCCe
Q 014125 286 --------------KDPYILCWDLRK----AVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQ-DGLVHIYDLQTGKW 346 (430)
Q Consensus 286 --------------~d~~i~i~d~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~ 346 (430)
.++.|.+.|.++ .......+ .-......+.++|||+++++++. +++|.|+|+.+.+.
T Consensus 280 ~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yI----PVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~ 355 (635)
T PRK02888 280 RIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYV----PVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDD 355 (635)
T ss_pred HHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEE----ECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhh
Confidence 113466666655 22222222 12334556899999998776654 88999999987553
Q ss_pred ------------ecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCCCc
Q 014125 347 ------------ISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFED 385 (430)
Q Consensus 347 ------------~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~ 385 (430)
+..... .......+|.++|....|..-|..+..|+...
T Consensus 356 ~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 356 LFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 222222 22446778999998888888777777776543
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00041 Score=62.75 Aligned_cols=198 Identities=13% Similarity=0.101 Sum_probs=107.8
Q ss_pred cEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEE
Q 014125 149 PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAI 228 (430)
Q Consensus 149 ~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 228 (430)
.|++|+. .|+.+..+..... .+.++.|+.+..+++...||.+++||+.... .+...... ....-....+...
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~-----~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i-~~~~v~e~~i~~~ 133 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSG-----RIVGMGWTDDEELVVVQSDGTVRVYDLFGEF-QFSLGEEI-EEEKVLECRIFAI 133 (410)
T ss_pred EEEEECC-CCCEeEEEEECCC-----CEEEEEECCCCeEEEEEcCCEEEEEeCCCce-eechhhhc-cccCccccccccc
Confidence 4888886 4555666554442 8999999998888889999999999986321 11100000 0001111112222
Q ss_pred EEcCCCCceEEEecCCCeEEEEEcCCce-eeEEeecccc---------CeEE-EEEccCCCEEEEEecCCCeEEEEeCCC
Q 014125 229 AFSPTHTGMLAIGSYSQTSAIYREDNME-LLYVLHGQEG---------GVTH-VQFSRDGNYLYTGGRKDPYILCWDLRK 297 (430)
Q Consensus 229 ~~~~~~~~~l~~~~~dg~v~~~d~~~~~-~~~~~~~~~~---------~i~~-~~~~~~~~~l~~~~~~d~~i~i~d~~~ 297 (430)
.+.. .+ +++-..++.+.+.+--... ....+..-.. .... ..++.+....+... .++.+.+.+-..
T Consensus 134 ~~~~-~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~-~g~~i~~i~~~~ 209 (410)
T PF04841_consen 134 WFYK-NG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLA-NGETIYIIDENS 209 (410)
T ss_pred ccCC-CC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEe-cCCEEEEEEccc
Confidence 2222 22 3333445555554322211 1111110000 0111 22344444444444 455555444322
Q ss_pred CceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccc-cCCeeEEEEcCCC
Q 014125 298 AVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAA-ADTVNGFSFHPFL 366 (430)
Q Consensus 298 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~ 366 (430)
... ....+++..+++||+|++||.-..+|.+.|...+-.+.+..+... ......+.|.-+.
T Consensus 210 ~~~--------i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 210 FKQ--------IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND 271 (410)
T ss_pred ccc--------ccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC
Confidence 111 123467999999999999999999999999987766666666544 3466778887554
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.7e-07 Score=81.65 Aligned_cols=203 Identities=17% Similarity=0.184 Sum_probs=131.4
Q ss_pred ceEEEEECCCCc--EEEEE-cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecC----CCeE
Q 014125 175 AAFSVAFNPTGT--KIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY----SQTS 247 (430)
Q Consensus 175 ~v~~~~~~~~~~--~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----dg~v 247 (430)
.+.|+++.-+.. .+++| .+|.|-+-.++.+... -.....++..+.++++|++-+.+.||+|-. |..+
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS------s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~ 131 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS------SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSL 131 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccc------cceecccccccccccccccccHHHHHhhhhhhcccCCc
Confidence 455666554443 44455 7899999888764322 112235667789999999988888888853 5679
Q ss_pred EEEEcCCc--eee--EEeec-cccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcC
Q 014125 248 AIYREDNM--ELL--YVLHG-QEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEP 322 (430)
Q Consensus 248 ~~~d~~~~--~~~--~~~~~-~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 322 (430)
.|||+.++ .+. ..+.+ ......+++|..+.+.+++|. ....+.++|++........ -.+..+..+..+|
T Consensus 132 ~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm-~sr~~~ifdlRqs~~~~~s-----vnTk~vqG~tVdp 205 (783)
T KOG1008|consen 132 KIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGM-TSRSVHIFDLRQSLDSVSS-----VNTKYVQGITVDP 205 (783)
T ss_pred cceecccccCCCccccccccccccCccccccccCcchhhccc-ccchhhhhhhhhhhhhhhh-----hhhhhcccceecC
Confidence 99999876 221 12222 334567899998888888888 8889999999854222111 1233455677788
Q ss_pred -CCCEEEEEccCCcEEEEE-cCCC-CeecccccccC----CeeEEEEcCCCc-EEEEeeC-CceeeecCCCcccccc
Q 014125 323 -SGRHLGTGGQDGLVHIYD-LQTG-KWISGFQAAAD----TVNGFSFHPFLP-MAASSSG-HRRFPVDDFEDLHLSG 390 (430)
Q Consensus 323 -~~~~l~~~~~dg~i~vwd-~~~~-~~~~~~~~~~~----~v~~~~~~~~~~-~l~s~~~-d~~~~vw~~~~l~~~~ 390 (430)
.+.|+++-. ||.|-+|| .++- .++..+..... .+..++|.|... ++++... .+.|+.++.....+-+
T Consensus 206 ~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~ 281 (783)
T KOG1008|consen 206 FSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEG 281 (783)
T ss_pred CCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCcc
Confidence 677877665 99999999 4433 33444432222 389999999665 5555544 4567776655544443
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00033 Score=62.49 Aligned_cols=276 Identities=16% Similarity=0.138 Sum_probs=139.0
Q ss_pred CcCCceEEEec---------CCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCc
Q 014125 69 SPDGSSFLTSS---------EDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC 139 (430)
Q Consensus 69 sp~~~~l~s~~---------~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (430)
|||+++++... ..+.+.|||+.++...... .....+....| +|+|+
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~------------------~~~~~~~~~~~-------sP~g~ 55 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLT------------------PPPPKLQDAKW-------SPDGK 55 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-------------------EETTBSEEEE--------SSST
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECc------------------CCcccccccee-------ecCCC
Confidence 68888877642 2467889999875321100 00246777788 77899
Q ss_pred eEEEEeCCCcEEEEeccCCceeeeeeccccc-----------cc-ccceEEEEECCCCcEEEE-E-cCCeEEEEEcC---
Q 014125 140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAV-----------DE-ITAAFSVAFNPTGTKIFA-G-YNKSVRVFDVH--- 202 (430)
Q Consensus 140 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-----------~~-~~~v~~~~~~~~~~~l~~-~-~d~~i~v~d~~--- 202 (430)
.++... ++.|.+++..++...+........ ++ ...-..+-|+||+++|+. . .+..|..+.+.
T Consensus 56 ~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~ 134 (353)
T PF00930_consen 56 YIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYS 134 (353)
T ss_dssp EEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEES
T ss_pred eeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccC
Confidence 888875 567999998877544332211000 00 123357899999999983 3 44444443322
Q ss_pred CCCC---cccccc------------------------cccCC--CCCCCcceEEEEEcCCCCceEEE-ecCC---CeEEE
Q 014125 203 RPGR---DFEKYS------------------------TLKGN--KEGQAGIMSAIAFSPTHTGMLAI-GSYS---QTSAI 249 (430)
Q Consensus 203 ~~~~---~~~~~~------------------------~~~~~--~~~~~~~v~~~~~~~~~~~~l~~-~~~d---g~v~~ 249 (430)
.... ....+. .+... .......+..+.|.+++..+++. ...+ ..+.+
T Consensus 135 ~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~ 214 (353)
T PF00930_consen 135 PPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVL 214 (353)
T ss_dssp SSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEE
T ss_pred CccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEE
Confidence 1110 000000 00000 01234567888898854423333 2222 23666
Q ss_pred EEcCCceeeEEeec-cccC---eEEEEEc-cCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccce-EEEEEcCC
Q 014125 250 YREDNMELLYVLHG-QEGG---VTHVQFS-RDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQR-ILFDIEPS 323 (430)
Q Consensus 250 ~d~~~~~~~~~~~~-~~~~---i~~~~~~-~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~ 323 (430)
+|..++........ ..+. -....|. +++..++..+..+|.-+||-+.........+ ....-.| ..+.++++
T Consensus 215 ~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~l---T~G~~~V~~i~~~d~~ 291 (353)
T PF00930_consen 215 CDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQL---TSGDWEVTSILGWDED 291 (353)
T ss_dssp EEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEES---S-SSS-EEEEEEEECT
T ss_pred EECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceecc---ccCceeecccceEcCC
Confidence 77776654333321 2222 2355554 6666555444377755554443332222232 2233445 34778888
Q ss_pred CCEE-EEEccC----CcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEee
Q 014125 324 GRHL-GTGGQD----GLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSS 373 (430)
Q Consensus 324 ~~~l-~~~~~d----g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 373 (430)
++.| +++..+ ..|+.-++..+..+..+......-..+.|+|++++++-..
T Consensus 292 ~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 292 NNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp SSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred CCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence 7654 455543 2466666662333444443322226899999999776554
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00063 Score=61.33 Aligned_cols=74 Identities=19% Similarity=0.264 Sum_probs=62.2
Q ss_pred ccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcC
Q 014125 263 GQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQ 342 (430)
Q Consensus 263 ~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 342 (430)
.....+.+++++|+...++.|+ .||.|.+||...+..... ...-.++.++|+|+|..+++|+..|.+.+||+.
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC-~DgSiiLyD~~~~~t~~~------ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGC-EDGSIILYDTTRGVTLLA------KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred ecCCcceEEecCcccceEEEEe-cCCeEEEEEcCCCeeeee------eecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence 3667899999999999999999 999999999987633321 233456789999999999999999999999986
Q ss_pred C
Q 014125 343 T 343 (430)
Q Consensus 343 ~ 343 (430)
-
T Consensus 330 L 330 (545)
T PF11768_consen 330 L 330 (545)
T ss_pred c
Confidence 3
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.39 E-value=5.8e-05 Score=67.97 Aligned_cols=179 Identities=17% Similarity=0.184 Sum_probs=105.2
Q ss_pred CCCCceEEEEe---CC-CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCCcc
Q 014125 135 DPTSCVFASTT---RD-HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDF 208 (430)
Q Consensus 135 ~~~~~~l~~~~---~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~ 208 (430)
+|++..++..+ .. ..+.++++.+++......... .-..-.|+|||+.|+ +. .|+...+|-++..+...
T Consensus 201 s~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g------~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~ 274 (425)
T COG0823 201 SPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNG------NNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNL 274 (425)
T ss_pred CcCCCceEEEEEecCCCceEEEEeccCCccceeeccCC------ccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcc
Confidence 66776655442 22 458999999887665554322 223568999999988 44 66665554443322221
Q ss_pred cccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCe--EEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecC
Q 014125 209 EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQT--SAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRK 286 (430)
Q Consensus 209 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 286 (430)
.. +....+.-+.=.|+|++..++++.+..|. |.+++...+.. ..+....+.-..-.|+|||++|+..+..
T Consensus 275 ~~-------Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~~~~ 346 (425)
T COG0823 275 PR-------LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFESSS 346 (425)
T ss_pred ee-------cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEEecc
Confidence 11 11112223356899988888888777776 55556655544 3333333333478899999999887744
Q ss_pred CCe--EEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEcc
Q 014125 287 DPY--ILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQ 332 (430)
Q Consensus 287 d~~--i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 332 (430)
+|. |.+.|+.++.. ... .........-+|.|+|+.+...+.
T Consensus 347 ~g~~~i~~~~~~~~~~-~~~----lt~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 347 GGQWDIDKNDLASGGK-IRI----LTSTYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred CCceeeEEeccCCCCc-EEE----ccccccCCCCCcCCCCceEEEecc
Confidence 565 66667666543 111 122333334667888877665544
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.9e-05 Score=72.98 Aligned_cols=168 Identities=11% Similarity=0.033 Sum_probs=114.7
Q ss_pred ceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcC
Q 014125 175 AAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED 253 (430)
Q Consensus 175 ~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~ 253 (430)
.++|++++ +++++ +..+|.|++++..... .....|... .. .+.++++|+.||+|.|..+-
T Consensus 41 ~is~~av~--~~~~~~GtH~g~v~~~~~~~~~----------~~~~~~s~~------~~-~Gey~asCS~DGkv~I~sl~ 101 (846)
T KOG2066|consen 41 AISCCAVH--DKFFALGTHRGAVYLTTCQGNP----------KTNFDHSSS------IL-EGEYVASCSDDGKVVIGSLF 101 (846)
T ss_pred HHHHHHhh--cceeeeccccceEEEEecCCcc----------ccccccccc------cc-CCceEEEecCCCcEEEeecc
Confidence 45566664 55666 5589999999886421 011112111 22 67799999999999999998
Q ss_pred CceeeEEeeccccCeEEEEEccC-----CCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEE
Q 014125 254 NMELLYVLHGQEGGVTHVQFSRD-----GNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLG 328 (430)
Q Consensus 254 ~~~~~~~~~~~~~~i~~~~~~~~-----~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 328 (430)
+.+...++. ...++.+++++|+ .+.+++|| ..| +.++.-+-....... ......++|.++.|. |.++|
T Consensus 102 ~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG-~ag-lvL~er~wlgnk~~v--~l~~~eG~I~~i~W~--g~lIA 174 (846)
T KOG2066|consen 102 TDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGG-MAG-LVLSERNWLGNKDSV--VLSEGEGPIHSIKWR--GNLIA 174 (846)
T ss_pred CCccceeEe-cCCcceeEEeccchhhhhhhheeecC-cce-EEEehhhhhcCccce--eeecCccceEEEEec--CcEEE
Confidence 887776665 4578999999998 45788888 777 777764321111111 124567889999996 78999
Q ss_pred EEccCCcEEEEEcCCCCeecccccccCC------eeEEEEcCCCcEE
Q 014125 329 TGGQDGLVHIYDLQTGKWISGFQAAADT------VNGFSFHPFLPMA 369 (430)
Q Consensus 329 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~------v~~~~~~~~~~~l 369 (430)
-++.+| |+|||+.+++.+..++..... ...+.|.++.+++
T Consensus 175 Wand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LV 220 (846)
T KOG2066|consen 175 WANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLV 220 (846)
T ss_pred EecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEE
Confidence 998888 999999998887766543333 3456676654433
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.0009 Score=62.43 Aligned_cols=253 Identities=13% Similarity=0.122 Sum_probs=134.1
Q ss_pred ceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEe-------
Q 014125 73 SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTT------- 145 (430)
Q Consensus 73 ~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~------- 145 (430)
..++.++.+|.|.-+|.++++..-........ . .-..+.-.|. - .+..++.++
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~------~---------~~~~i~ssP~----v-~~~~v~vg~~~~~~~~ 170 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQV------P---------PGYTMTGAPT----I-VKKLVIIGSSGAEFFA 170 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCc------C---------cceEecCCCE----E-ECCEEEEecccccccc
Confidence 56777788889999998887654332211100 0 0000111110 0 112344443
Q ss_pred --CCCcEEEEeccCCceeeeeecccccccc---------------cce-EEEEECCCCcEEEEE-cCC------------
Q 014125 146 --RDHPIHLWDATTGLLRCTYRAYDAVDEI---------------TAA-FSVAFNPTGTKIFAG-YNK------------ 194 (430)
Q Consensus 146 --~dg~i~vwd~~~~~~~~~~~~~~~~~~~---------------~~v-~~~~~~~~~~~l~~~-~d~------------ 194 (430)
.+|.+..+|..+|+.+..+......... ..+ ...++.+.+..++.+ .++
T Consensus 171 ~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~ 250 (488)
T cd00216 171 CGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPG 250 (488)
T ss_pred CCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCC
Confidence 4678999999999988877653210000 001 123444444455533 343
Q ss_pred ------eEEEEEcCCCCCcccccccccCC--CCCCCcc-eEEEE-EcCCCCceEEEecCCCeEEEEEcCCceeeEEeecc
Q 014125 195 ------SVRVFDVHRPGRDFEKYSTLKGN--KEGQAGI-MSAIA-FSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ 264 (430)
Q Consensus 195 ------~i~v~d~~~~~~~~~~~~~~~~~--~~~~~~~-v~~~~-~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~ 264 (430)
.|.-+|..++...+......... ......+ +..+. ..-.....+++++.+|.+..+|.++++.+......
T Consensus 251 ~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~ 330 (488)
T cd00216 251 DNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV 330 (488)
T ss_pred CCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee
Confidence 68888887765544322111000 0111111 11111 11101136788889999999999999988765421
Q ss_pred ccCeEEEEEccCCCEEEEEe-----------------cCCCeEEEEeCCCCceEEEEeecccCCc----cce--EEEEEc
Q 014125 265 EGGVTHVQFSRDGNYLYTGG-----------------RKDPYILCWDLRKAVQVVYKLYRSSEHT----NQR--ILFDIE 321 (430)
Q Consensus 265 ~~~i~~~~~~~~~~~l~~~~-----------------~~d~~i~i~d~~~~~~~~~~~~~~~~~~----~~v--~~~~~~ 321 (430)
...++.+| ..++... ..+|.|...|+.+++...........+. ... ..+..
T Consensus 331 ---~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~- 404 (488)
T cd00216 331 ---EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT- 404 (488)
T ss_pred ---ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe-
Confidence 11233444 2333321 1367888899988865543322100000 111 11222
Q ss_pred CCCCEEEEEccCCcEEEEEcCCCCeeccccc
Q 014125 322 PSGRHLGTGGQDGLVHIYDLQTGKWISGFQA 352 (430)
Q Consensus 322 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 352 (430)
.+..|+.++.||.|+.+|..+|+.+..++.
T Consensus 405 -~g~~v~~g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 405 -AGNLVFAGAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred -cCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence 467889999999999999999999888764
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.1e-05 Score=70.47 Aligned_cols=91 Identities=19% Similarity=0.164 Sum_probs=68.5
Q ss_pred EEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEE
Q 014125 291 LCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAA 370 (430)
Q Consensus 291 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 370 (430)
.+|++...+.. ..........+.+.+++++|+...++.|+.||+|.+||...+... +....-.++.++|||+|.+++
T Consensus 239 ciYE~~r~klq-rvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~ 315 (545)
T PF11768_consen 239 CIYECSRNKLQ-RVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFV 315 (545)
T ss_pred EEEEeecCcee-EEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEE
Confidence 45666544222 222222456788999999999999999999999999999876433 222344678999999999999
Q ss_pred EeeCCceeeecCCC
Q 014125 371 SSSGHRRFPVDDFE 384 (430)
Q Consensus 371 s~~~d~~~~vw~~~ 384 (430)
+|+..|.+.+||..
T Consensus 316 V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 316 VGSEQGELQCFDMA 329 (545)
T ss_pred EEcCCceEEEEEee
Confidence 99999999888653
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00067 Score=63.24 Aligned_cols=281 Identities=13% Similarity=0.100 Sum_probs=146.7
Q ss_pred CceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeee--eeeeccccCccCCCCceEEEEeCCCc
Q 014125 72 GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVY--DFCWFPHMSASDPTSCVFASTTRDHP 149 (430)
Q Consensus 72 ~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~~~~~~l~~~~~dg~ 149 (430)
+..++.++.++.+.-.|..+++..-....... .. .....+. .+.. .++..++.++.+|.
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~------~~-----~~~~~~~~~g~~~--------~~~~~V~v~~~~g~ 121 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLP------AD-----RGCCDVVNRGVAY--------WDPRKVFFGTFDGR 121 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCC------cc-----ccccccccCCcEE--------ccCCeEEEecCCCe
Confidence 44666777889999999988865433222110 00 0000000 0000 02257888889999
Q ss_pred EEEEeccCCceeeeeecccccccccceE-EEEECCCCcEEEEE---------cCCeEEEEEcCCCCCcccccccccC--C
Q 014125 150 IHLWDATTGLLRCTYRAYDAVDEITAAF-SVAFNPTGTKIFAG---------YNKSVRVFDVHRPGRDFEKYSTLKG--N 217 (430)
Q Consensus 150 i~vwd~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~---------~d~~i~v~d~~~~~~~~~~~~~~~~--~ 217 (430)
|..+|.++|+.+..+...........+. +..+. ++.+++.+ .++.+..+|..++...+........ .
T Consensus 122 v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~-~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~ 200 (488)
T cd00216 122 LVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV-KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNA 200 (488)
T ss_pred EEEEECCCCCEeeeecCCCCcCcceEecCCCEEE-CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCC
Confidence 9999999999988876543210000011 11121 23333332 2577888888776554432211000 0
Q ss_pred CCC---------CC-c-ceEEEEEcCCCCceEEEecCCC------------------eEEEEEcCCceeeEEeeccccCe
Q 014125 218 KEG---------QA-G-IMSAIAFSPTHTGMLAIGSYSQ------------------TSAIYREDNMELLYVLHGQEGGV 268 (430)
Q Consensus 218 ~~~---------~~-~-~v~~~~~~~~~~~~l~~~~~dg------------------~v~~~d~~~~~~~~~~~~~~~~i 268 (430)
... +. . .-...++.+ ...++++++.++ .|.-+|..+++....++.-....
T Consensus 201 ~~~~~~~~~~~~~~g~~vw~~pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~ 279 (488)
T cd00216 201 FPTWGPDRQMWGPGGGTSWASPTYDP-KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDL 279 (488)
T ss_pred CCCCCCCcceecCCCCCccCCeeEeC-CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCC
Confidence 000 00 0 011334444 345677776554 79999999999887765211111
Q ss_pred E------EEEEc----cCCC---EEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEE-----
Q 014125 269 T------HVQFS----RDGN---YLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTG----- 330 (430)
Q Consensus 269 ~------~~~~~----~~~~---~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----- 330 (430)
. ...+. -++. .+++++ .+|.+..+|.++++........ ...++.+| ..++.+
T Consensus 280 ~~~~~~s~p~~~~~~~~~g~~~~~V~~g~-~~G~l~ald~~tG~~~W~~~~~-------~~~~~~~~--~~vyv~~~~~~ 349 (488)
T cd00216 280 WDYDGPNQPSLADIKPKDGKPVPAIVHAP-KNGFFYVLDRTTGKLISARPEV-------EQPMAYDP--GLVYLGAFHIP 349 (488)
T ss_pred cccccCCCCeEEeccccCCCeeEEEEEEC-CCceEEEEECCCCcEeeEeEee-------ccccccCC--ceEEEcccccc
Confidence 1 01111 1333 566676 8999999999999765433211 01123333 222221
Q ss_pred -------------ccCCcEEEEEcCCCCeeccccccc--------CCeeEEEEcCCCcEEEEeeCCceeeecCC
Q 014125 331 -------------GQDGLVHIYDLQTGKWISGFQAAA--------DTVNGFSFHPFLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 331 -------------~~dg~i~vwd~~~~~~~~~~~~~~--------~~v~~~~~~~~~~~l~s~~~d~~~~vw~~ 383 (430)
..+|.+.-.|+.+|+.+....... .+...-.....+.+|+.++.||.+...|.
T Consensus 350 ~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~ 423 (488)
T cd00216 350 LGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDA 423 (488)
T ss_pred ccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEEC
Confidence 246789999999998877665331 11100011124566777777777766544
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.4e-05 Score=72.79 Aligned_cols=107 Identities=16% Similarity=0.209 Sum_probs=83.7
Q ss_pred EEEECCCCcEEEE-E----cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEc
Q 014125 178 SVAFNPTGTKIFA-G----YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRE 252 (430)
Q Consensus 178 ~~~~~~~~~~l~~-~----~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~ 252 (430)
-..|+|...++++ + ..|.|.||-- ++.+. .. ...+..+++++|+| ..-+|+.|-.-|.+.+|..
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfad-tGEPq-r~--------Vt~P~hatSLCWHp-e~~vLa~gwe~g~~~v~~~ 88 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFAD-TGEPQ-RD--------VTYPVHATSLCWHP-EEFVLAQGWEMGVSDVQKT 88 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEec-CCCCC-cc--------cccceehhhhccCh-HHHHHhhccccceeEEEec
Confidence 4579999988883 2 4688988843 22111 10 11123467899999 7778999999999999999
Q ss_pred CCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCC
Q 014125 253 DNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR 296 (430)
Q Consensus 253 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~ 296 (430)
.+.+.-.....|..+|..+.||++|..++++. .-|.|.+|...
T Consensus 89 ~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d-~~g~v~lwr~d 131 (1416)
T KOG3617|consen 89 NTTETHTVVETHPAPIQGLDWSHDGTVLMTLD-NPGSVHLWRYD 131 (1416)
T ss_pred CCceeeeeccCCCCCceeEEecCCCCeEEEcC-CCceeEEEEee
Confidence 88877777778999999999999999999998 89999999875
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00033 Score=61.65 Aligned_cols=179 Identities=16% Similarity=0.164 Sum_probs=107.8
Q ss_pred cEEEEeccCCceeeeeecccccccccceEEEEECCC----CcEEEEEc----------C-CeEEEEEcCCCC---Ccccc
Q 014125 149 PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT----GTKIFAGY----------N-KSVRVFDVHRPG---RDFEK 210 (430)
Q Consensus 149 ~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~----------d-~~i~v~d~~~~~---~~~~~ 210 (430)
.|++.|..+.+.+..+..... ++...+..+.+..+ ..++++|. . |.|.++++.... ..++.
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~-E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPN-EHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETT-EEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred EEEEEeCCCCeEEEEEECCCC-ceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 578888888877776665543 33334445556543 46666431 1 889999998731 11111
Q ss_pred cccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCce-eeEEeecccc--CeEEEEEccCCCEEEEEecCC
Q 014125 211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME-LLYVLHGQEG--GVTHVQFSRDGNYLYTGGRKD 287 (430)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~-~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~~d 287 (430)
.. .....++|++++--. + .|+++ .++.|.+|++...+ ....-. +.. .+.++.. .+++++++. ..
T Consensus 82 i~-----~~~~~g~V~ai~~~~--~-~lv~~-~g~~l~v~~l~~~~~l~~~~~-~~~~~~i~sl~~--~~~~I~vgD-~~ 148 (321)
T PF03178_consen 82 IH-----STEVKGPVTAICSFN--G-RLVVA-VGNKLYVYDLDNSKTLLKKAF-YDSPFYITSLSV--FKNYILVGD-AM 148 (321)
T ss_dssp EE-----EEEESS-EEEEEEET--T-EEEEE-ETTEEEEEEEETTSSEEEEEE-E-BSSSEEEEEE--ETTEEEEEE-SS
T ss_pred EE-----EEeecCcceEhhhhC--C-EEEEe-ecCEEEEEEccCcccchhhhe-ecceEEEEEEec--cccEEEEEE-cc
Confidence 11 122356788887763 3 33333 35899999998777 433322 333 4555544 566899998 77
Q ss_pred CeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcC
Q 014125 288 PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQ 342 (430)
Q Consensus 288 ~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 342 (430)
..+.++..+........+.. ......++++.+-++++.++.+..+|.+.++...
T Consensus 149 ~sv~~~~~~~~~~~l~~va~-d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 149 KSVSLLRYDEENNKLILVAR-DYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp SSEEEEEEETTTE-EEEEEE-ESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred cCEEEEEEEccCCEEEEEEe-cCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 78887765543332323322 3345668888888666799999999999999886
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00015 Score=69.37 Aligned_cols=141 Identities=12% Similarity=0.132 Sum_probs=96.9
Q ss_pred CCceEEEe-cCCCeEEEEEcCCceeeEEeeccccC-eEEEEEccC-------CCEEEEEecCCCeEEEEeCCCCce-EEE
Q 014125 234 HTGMLAIG-SYSQTSAIYREDNMELLYVLHGQEGG-VTHVQFSRD-------GNYLYTGGRKDPYILCWDLRKAVQ-VVY 303 (430)
Q Consensus 234 ~~~~l~~~-~~dg~v~~~d~~~~~~~~~~~~~~~~-i~~~~~~~~-------~~~l~~~~~~d~~i~i~d~~~~~~-~~~ 303 (430)
+.++|+.. .....|+-.|+..|+.+..+..+... |..+ .|+ ....++|- .++.+..||.|-... .+.
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGl-s~n~lfriDpR~~~~k~v~ 568 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGL-SDNSLFRIDPRLSGNKLVD 568 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEe--cccccccccCCCceEEEE-CCCceEEeccCCCCCceee
Confidence 45555554 35678999999999999999877643 4444 443 23345566 789999999997542 221
Q ss_pred EeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCcee
Q 014125 304 KLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRF 378 (430)
Q Consensus 304 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~ 378 (430)
.....-.......|++-+.+| +||+|+.+|.||+||--..+....+++-..+|.+|..+.||++|++.+..-.+
T Consensus 569 ~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLl 642 (794)
T PF08553_consen 569 SQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLL 642 (794)
T ss_pred ccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEE
Confidence 111112344567778777665 78999999999999954333334556777899999999999988877654333
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00046 Score=61.62 Aligned_cols=239 Identities=13% Similarity=0.082 Sum_probs=124.2
Q ss_pred eeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceee------eee-----------------ccc----c----
Q 014125 121 SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRC------TYR-----------------AYD----A---- 169 (430)
Q Consensus 121 ~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~------~~~-----------------~~~----~---- 169 (430)
.|..+.+ .++...|++|...|.|.+|.....+... ... ... .
T Consensus 3 ~v~~vs~-------a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~g 75 (395)
T PF08596_consen 3 SVTHVSF-------APETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEG 75 (395)
T ss_dssp -EEEEEE-------ETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEE
T ss_pred eEEEEEe-------cCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccc
Confidence 4666777 5567789999999999998875432221 000 000 0
Q ss_pred -------cccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCCcccccccccC--CCCCCCcceEEEEEcC----C--
Q 014125 170 -------VDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFEKYSTLKG--NKEGQAGIMSAIAFSP----T-- 233 (430)
Q Consensus 170 -------~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~----~-- 233 (430)
....++|++++.+.-| ++++ ..+|.+.|.|++.+.-.+. ..+.. ........++++.|.. +
T Consensus 76 f~P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~--~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ 152 (395)
T PF08596_consen 76 FLPLTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYN--ENIRESFLSKSSSSYVTSIEFSVMTLGGDG 152 (395)
T ss_dssp EEEEEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEE--EEGGG--T-SS----EEEEEEEEEE-TTSS
T ss_pred cCchhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEee--ccccccccccccccCeeEEEEEEEecCCCc
Confidence 0014578899987555 5554 4799999999976533222 11111 1223345678888862 1
Q ss_pred -CCceEEEecCCCeEEEEEcC--C-cee----eEEeeccccCeEEEE-EccC-C-------------------CEEEEEe
Q 014125 234 -HTGMLAIGSYSQTSAIYRED--N-MEL----LYVLHGQEGGVTHVQ-FSRD-G-------------------NYLYTGG 284 (430)
Q Consensus 234 -~~~~l~~~~~dg~v~~~d~~--~-~~~----~~~~~~~~~~i~~~~-~~~~-~-------------------~~l~~~~ 284 (430)
..-.+++|+..|.+.+|.+- . +.. ......+.++|..+. |+.+ | +.+++.+
T Consensus 153 ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv 232 (395)
T PF08596_consen 153 YSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV 232 (395)
T ss_dssp SEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE
T ss_pred ccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE
Confidence 12478899999999999764 1 211 112223445665554 3221 1 1234444
Q ss_pred cCCCeEEEEeCCCCceEEEEeecccCCccceEEEEE-----cCCCCEEEEEccCCcEEEEEcCCCCeeccccccc----C
Q 014125 285 RKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDI-----EPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAA----D 355 (430)
Q Consensus 285 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~-----~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~----~ 355 (430)
.+..++++...+.+...+.. ........+.+ ...+..|++-..+|.|+++.+..-+.+..++.+. .
T Consensus 233 -Se~~irv~~~~~~k~~~K~~----~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~ 307 (395)
T PF08596_consen 233 -SESDIRVFKPPKSKGAHKSF----DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSR 307 (395)
T ss_dssp --SSEEEEE-TT---EEEEE-----SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HH
T ss_pred -cccceEEEeCCCCcccceee----ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccc
Confidence 58899999988765443222 11122223333 2346678888999999999999988877666432 2
Q ss_pred CeeEEEEcCCCcEEEEeeC
Q 014125 356 TVNGFSFHPFLPMAASSSG 374 (430)
Q Consensus 356 ~v~~~~~~~~~~~l~s~~~ 374 (430)
.+....++++|..++-.+.
T Consensus 308 ~~~~ssis~~Gdi~~~~gp 326 (395)
T PF08596_consen 308 RLSSSSISRNGDIFYWTGP 326 (395)
T ss_dssp HHTT-EE-TTS-EEEE-SS
T ss_pred cccccEECCCCCEEEEeCc
Confidence 4566777888887766653
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.24 E-value=8.2e-05 Score=65.74 Aligned_cols=145 Identities=17% Similarity=0.222 Sum_probs=101.4
Q ss_pred eEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCc--------EEEEEcCCeEEEEEcCCCCCccccc
Q 014125 140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGT--------KIFAGYNKSVRVFDVHRPGRDFEKY 211 (430)
Q Consensus 140 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------~l~~~~d~~i~v~d~~~~~~~~~~~ 211 (430)
+|.++.....++-.|++.|+.+..++.+. .|.-+.+.|+.+ .|++-.++.|.-||.+-.+......
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~------di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~ 421 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFED------DINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAV 421 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccC------CcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeee
Confidence 34455556678999999999999998876 355566767643 3344478999999998654421111
Q ss_pred ccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEE
Q 014125 212 STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYIL 291 (430)
Q Consensus 212 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~ 291 (430)
... ..........|.+-. +...+++|+.+|.|++||.-.......+.+...+|..+..+.+|++|++++ +.++.
T Consensus 422 ~q~--kqy~~k~nFsc~aTT--~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc--~tyLl 495 (644)
T KOG2395|consen 422 VQS--KQYSTKNNFSCFATT--ESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC--KTYLL 495 (644)
T ss_pred eec--cccccccccceeeec--CCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec--ccEEE
Confidence 111 111222345566655 445899999999999999844455566778888999999999999999887 77777
Q ss_pred EEeCC
Q 014125 292 CWDLR 296 (430)
Q Consensus 292 i~d~~ 296 (430)
+.++.
T Consensus 496 Li~t~ 500 (644)
T KOG2395|consen 496 LIDTL 500 (644)
T ss_pred EEEEe
Confidence 77754
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.003 Score=54.30 Aligned_cols=235 Identities=13% Similarity=0.135 Sum_probs=127.4
Q ss_pred CCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcE
Q 014125 71 DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPI 150 (430)
Q Consensus 71 ~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i 150 (430)
.++.|+.|+.+| +.+++...... ........+|..+...| +-+.|++-+ |+.+
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~------------------~~~i~~~~~I~ql~vl~-------~~~~llvLs-d~~l 58 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSK------------------PTRILKLSSITQLSVLP-------ELNLLLVLS-DGQL 58 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCcc------------------ceeEeecceEEEEEEec-------ccCEEEEEc-CCcc
Confidence 578999999998 88988832211 11112223477777744 334444443 5999
Q ss_pred EEEeccCCceeeeeec---------ccccccccceEEEE---ECCCCcEEEEEcCCeEEEEEcCCCCCcc-cccccccCC
Q 014125 151 HLWDATTGLLRCTYRA---------YDAVDEITAAFSVA---FNPTGTKIFAGYNKSVRVFDVHRPGRDF-EKYSTLKGN 217 (430)
Q Consensus 151 ~vwd~~~~~~~~~~~~---------~~~~~~~~~v~~~~---~~~~~~~l~~~~d~~i~v~d~~~~~~~~-~~~~~~~~~ 217 (430)
.++++..-........ .........+..++ -......++++..+.|.+|....+.... .....+
T Consensus 59 ~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~--- 135 (275)
T PF00780_consen 59 YVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEI--- 135 (275)
T ss_pred EEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEE---
Confidence 9999876543331110 00111122344444 2233456667777899999987643322 222221
Q ss_pred CCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeecc------------ccCeEEEEEccCCCEEEEEec
Q 014125 218 KEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ------------EGGVTHVQFSRDGNYLYTGGR 285 (430)
Q Consensus 218 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~------------~~~i~~~~~~~~~~~l~~~~~ 285 (430)
.-...+.+++|.+ +.++.|.. ....+.|+.++.....+... ..++..+.. +++.+|++.
T Consensus 136 --~lp~~~~~i~~~~---~~i~v~~~-~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~-- 206 (275)
T PF00780_consen 136 --SLPDPPSSIAFLG---NKICVGTS-KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY-- 206 (275)
T ss_pred --EcCCCcEEEEEeC---CEEEEEeC-CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--
Confidence 1225688899974 36776764 44778888876554333211 123333343 345555543
Q ss_pred CCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccccc
Q 014125 286 KDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQA 352 (430)
Q Consensus 286 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 352 (430)
|..-.+.|.... ........ -...+..+++. ..||+..+.+ .|.||++.++++++.+..
T Consensus 207 -~~~g~fv~~~G~-~~r~~~i~---W~~~p~~~~~~--~pyli~~~~~-~iEV~~~~~~~lvQ~i~~ 265 (275)
T PF00780_consen 207 -DNIGVFVNKNGE-PSRKSTIQ---WSSAPQSVAYS--SPYLIAFSSN-SIEVRSLETGELVQTIPL 265 (275)
T ss_pred -cceEEEEcCCCC-cCcccEEE---cCCchhEEEEE--CCEEEEECCC-EEEEEECcCCcEEEEEEC
Confidence 333334444332 11111111 12244455553 4588777665 499999999999887764
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00039 Score=62.94 Aligned_cols=163 Identities=13% Similarity=0.117 Sum_probs=90.7
Q ss_pred ceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCC
Q 014125 175 AAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN 254 (430)
Q Consensus 175 ~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~ 254 (430)
.+..+.++|+|++++++.+|.-.++..... . ....+.-...+|.+ . +.+|+-..+++|.++.--+
T Consensus 34 ~p~~ls~npngr~v~V~g~geY~iyt~~~~----------r---~k~~G~g~~~vw~~-~-n~yAv~~~~~~I~I~kn~~ 98 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLVCGDGEYEIYTALAW----------R---NKAFGSGLSFVWSS-R-NRYAVLESSSTIKIYKNFK 98 (443)
T ss_dssp --SEEEE-TTSSEEEEEETTEEEEEETTTT----------E---EEEEEE-SEEEE-T-S-SEEEEE-TTS-EEEEETTE
T ss_pred CCeeEEECCCCCEEEEEcCCEEEEEEccCC----------c---ccccCceeEEEEec-C-ccEEEEECCCeEEEEEcCc
Confidence 467899999999999999999999883221 0 11123455678887 3 3577777789999974333
Q ss_pred ceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCC
Q 014125 255 MELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDG 334 (430)
Q Consensus 255 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 334 (430)
.+....+.. ...+..|-. |..|+..+ ++.|.+||+.+... +..+ .-.+|..+.|+++|.+++..+.+
T Consensus 99 ~~~~k~i~~-~~~~~~If~---G~LL~~~~--~~~i~~yDw~~~~~-i~~i-----~v~~vk~V~Ws~~g~~val~t~~- 165 (443)
T PF04053_consen 99 NEVVKSIKL-PFSVEKIFG---GNLLGVKS--SDFICFYDWETGKL-IRRI-----DVSAVKYVIWSDDGELVALVTKD- 165 (443)
T ss_dssp E-TT------SS-EEEEE----SSSEEEEE--TTEEEEE-TTT--E-EEEE-----SS-E-EEEEE-TTSSEEEEE-S--
T ss_pred cccceEEcC-CcccceEEc---CcEEEEEC--CCCEEEEEhhHcce-eeEE-----ecCCCcEEEEECCCCEEEEEeCC-
Confidence 433333332 123444433 88887776 55899999998743 3333 12248899999999999988866
Q ss_pred cEEEEEcCCC-----------CeecccccccCCeeEEEEcCC
Q 014125 335 LVHIYDLQTG-----------KWISGFQAAADTVNGFSFHPF 365 (430)
Q Consensus 335 ~i~vwd~~~~-----------~~~~~~~~~~~~v~~~~~~~~ 365 (430)
.++|++.+.. ..+..+..-...|.+..|..+
T Consensus 166 ~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d 207 (443)
T PF04053_consen 166 SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED 207 (443)
T ss_dssp SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT
T ss_pred eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC
Confidence 5888776532 022222222467888899866
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.0029 Score=56.99 Aligned_cols=202 Identities=16% Similarity=0.176 Sum_probs=131.7
Q ss_pred eeEEEECcCCc-eEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceE
Q 014125 63 LKGIKWSPDGS-SFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF 141 (430)
Q Consensus 63 v~~~~~sp~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 141 (430)
-..++.++++. ..++...+..|.+.|..+..... ... +-..|...+++++++.+
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~----------------~~~---------vG~~P~~~~~~~~~~~v 130 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLG----------------SIP---------VGLGPVGLAVDPDGKYV 130 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceee----------------Eee---------eccCCceEEECCCCCEE
Confidence 34678888877 44445556889999865432210 011 11144444558888777
Q ss_pred EEEeC---CCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE--cCCeEEEEEcCCCCCcccccccccC
Q 014125 142 ASTTR---DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG--YNKSVRVFDVHRPGRDFEKYSTLKG 216 (430)
Q Consensus 142 ~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~d~~i~v~d~~~~~~~~~~~~~~~~ 216 (430)
+.+.. ++++.+.|..+++.......... + ..++++|+|..++.. .++.|.+.|........ ... .
T Consensus 131 YV~n~~~~~~~vsvid~~t~~~~~~~~vG~~-----P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~---~~~-~ 200 (381)
T COG3391 131 YVANAGNGNNTVSVIDAATNKVTATIPVGNT-----P-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR---GSV-G 200 (381)
T ss_pred EEEecccCCceEEEEeCCCCeEEEEEecCCC-----c-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec---ccc-c
Confidence 77655 68899999998888877544332 3 789999999977754 58999999976531110 000 0
Q ss_pred CCCCCCcceEEEEEcCCCCceEEEecCC--CeEEEEEcCCceeeEEeecccc-CeEEEEEccCCCEEEEEecCCCeEEEE
Q 014125 217 NKEGQAGIMSAIAFSPTHTGMLAIGSYS--QTSAIYREDNMELLYVLHGQEG-GVTHVQFSRDGNYLYTGGRKDPYILCW 293 (430)
Q Consensus 217 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~v~~~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~~d~~i~i~ 293 (430)
...........+.++|++....++-..+ +.+...|..++.....-..-.. ....+.++|+|+.+++.....+.+.+-
T Consensus 201 ~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vi 280 (381)
T COG3391 201 SLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVI 280 (381)
T ss_pred cccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEE
Confidence 0111223346788999666566665555 6899999988876655221122 457789999999999987466899999
Q ss_pred eCCCCc
Q 014125 294 DLRKAV 299 (430)
Q Consensus 294 d~~~~~ 299 (430)
|..+..
T Consensus 281 d~~~~~ 286 (381)
T COG3391 281 DGATDR 286 (381)
T ss_pred eCCCCc
Confidence 988764
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.0042 Score=55.93 Aligned_cols=199 Identities=17% Similarity=0.132 Sum_probs=131.6
Q ss_pred ceEEEEECCCCcEEEEE--cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEec--CCCeEEEE
Q 014125 175 AAFSVAFNPTGTKIFAG--YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS--YSQTSAIY 250 (430)
Q Consensus 175 ~v~~~~~~~~~~~l~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~v~~~ 250 (430)
....++.++.+..+... .++.|.+.|...... ......+ .....++++|++..+.++-. .++++.+.
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~-------~~~~~vG--~~P~~~~~~~~~~~vYV~n~~~~~~~vsvi 145 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTV-------LGSIPVG--LGPVGLAVDPDGKYVYVANAGNGNNTVSVI 145 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcccce-------eeEeeec--cCCceEEECCCCCEEEEEecccCCceEEEE
Confidence 34578888888866633 579999999654211 0000011 14678899997766666666 47999999
Q ss_pred EcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEE
Q 014125 251 REDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTG 330 (430)
Q Consensus 251 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 330 (430)
|..+.+.......-..+ ..++++|+|..+++....++.|.+.|.......................+.++|+|.++...
T Consensus 146 d~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~ 224 (381)
T COG3391 146 DAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVA 224 (381)
T ss_pred eCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEE
Confidence 99988887775533344 89999999998888776799999999766532210000011223344568899999876655
Q ss_pred ccC---CcEEEEEcCCCCeecccccccC-CeeEEEEcCCCcEEEEeeCC-ceeeecCC
Q 014125 331 GQD---GLVHIYDLQTGKWISGFQAAAD-TVNGFSFHPFLPMAASSSGH-RRFPVDDF 383 (430)
Q Consensus 331 ~~d---g~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~s~~~d-~~~~vw~~ 383 (430)
... +.+...|..++.....-..-.. ....+..+|+|..+...... +.+.+-|.
T Consensus 225 ~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~ 282 (381)
T COG3391 225 NDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDG 282 (381)
T ss_pred eccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeC
Confidence 443 5899999998877665221111 46678999999988777443 55555543
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0032 Score=52.21 Aligned_cols=207 Identities=11% Similarity=0.129 Sum_probs=109.2
Q ss_pred CeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEE
Q 014125 120 ESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRV 198 (430)
Q Consensus 120 ~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v 198 (430)
..+..++|.|. .+.++++....+.|..++. +|+.+..+..... ...-.+++..++.++++. .++.+.+
T Consensus 22 ~e~SGLTy~pd------~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~----~D~EgI~y~g~~~~vl~~Er~~~L~~ 90 (248)
T PF06977_consen 22 DELSGLTYNPD------TGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGF----GDYEGITYLGNGRYVLSEERDQRLYI 90 (248)
T ss_dssp S-EEEEEEETT------TTEEEEEETTTTEEEEEET-T--EEEEEE-SS-----SSEEEEEE-STTEEEEEETTTTEEEE
T ss_pred CCccccEEcCC------CCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCC----CCceeEEEECCCEEEEEEcCCCcEEE
Confidence 45899999442 3557777788888888886 5788877765432 245688888888888877 6899999
Q ss_pred EEcCCCCCcccc--cccccCC-CCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCC---ceeeE--Eee------cc
Q 014125 199 FDVHRPGRDFEK--YSTLKGN-KEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN---MELLY--VLH------GQ 264 (430)
Q Consensus 199 ~d~~~~~~~~~~--~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~---~~~~~--~~~------~~ 264 (430)
+++......... ...+... ...++..+-.++|+|.+. .|+++-+..-..+|.++. ...+. ... ..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~-~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (248)
T PF06977_consen 91 FTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTN-RLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLF 169 (248)
T ss_dssp EEE----TT--EEEEEEEE---S---SS--EEEEEETTTT-EEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--
T ss_pred EEEeccccccchhhceEEecccccCCCcceEEEEEcCCCC-EEEEEeCCCChhhEEEccccCccceeeccccccccccce
Confidence 999654332211 1111111 123456689999999444 555566666666666543 11111 111 12
Q ss_pred ccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeeccc----CCccceEEEEEcCCCCEEEEEccCCcEEEE
Q 014125 265 EGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSS----EHTNQRILFDIEPSGRHLGTGGQDGLVHIY 339 (430)
Q Consensus 265 ~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 339 (430)
...+.+++++|....|+.-+.....|..+|..........+.... ..-...-.++|.++|++.+++ +-+..+++
T Consensus 170 ~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 170 VRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYRF 247 (248)
T ss_dssp SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEEE
T ss_pred eccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceEEEe
Confidence 345789999997665555554889999999544322222221100 111346789999999665544 56666654
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0036 Score=53.85 Aligned_cols=225 Identities=16% Similarity=0.122 Sum_probs=127.3
Q ss_pred CCCCc-eEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCccccccc
Q 014125 135 DPTSC-VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYST 213 (430)
Q Consensus 135 ~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~ 213 (430)
.++.. ++.+--..+.|.-|+..+++.. .+.... .+.++..-..+..|+++. ..+.+++.+..... .....
T Consensus 33 ~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~~p~------~~~~~~~~d~~g~Lv~~~-~g~~~~~~~~~~~~-t~~~~ 103 (307)
T COG3386 33 DPDRGALLWVDILGGRIHRLDPETGKKR-VFPSPG------GFSSGALIDAGGRLIACE-HGVRLLDPDTGGKI-TLLAE 103 (307)
T ss_pred cCCCCEEEEEeCCCCeEEEecCCcCceE-EEECCC------CcccceeecCCCeEEEEc-cccEEEeccCCcee-EEecc
Confidence 34444 5556666788999998766432 233222 223333333344444332 33455555432220 11111
Q ss_pred ccCCCCCCCcceEEEEEcCCCCceEEEecC-----------CCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEE
Q 014125 214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSY-----------SQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYT 282 (430)
Q Consensus 214 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----------dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 282 (430)
... .......+.+...|++ .+.++... -|.|+.+|. .+...+.+..+-..-+.|+||||++.|+.
T Consensus 104 ~~~--~~~~~r~ND~~v~pdG-~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~ 179 (307)
T COG3386 104 PED--GLPLNRPNDGVVDPDG-RIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYV 179 (307)
T ss_pred ccC--CCCcCCCCceeEcCCC-CEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEE
Confidence 111 1122456677888854 34333222 134555554 45666666655566689999999999998
Q ss_pred EecCCCeEEEEeCCC-CceEE--EEeecccCCccceEEEEEcCCCCEEEEEccCC-cEEEEEcCCCCeecccccccCCee
Q 014125 283 GGRKDPYILCWDLRK-AVQVV--YKLYRSSEHTNQRILFDIEPSGRHLGTGGQDG-LVHIYDLQTGKWISGFQAAADTVN 358 (430)
Q Consensus 283 ~~~~d~~i~i~d~~~-~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~~~~~v~ 358 (430)
+.+..+.|.-|++.. ..... ..........+..-.++...+|.+-+++..+| .|.+|+.+ ++++..+..+...++
T Consensus 180 aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t 258 (307)
T COG3386 180 ADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPT 258 (307)
T ss_pred EeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCc
Confidence 885668888888762 10000 00111122344455677778888776555554 89999998 999988887767888
Q ss_pred EEEEc-CCCcEEEEee
Q 014125 359 GFSFH-PFLPMAASSS 373 (430)
Q Consensus 359 ~~~~~-~~~~~l~s~~ 373 (430)
+++|- |+.+.|...+
T Consensus 259 ~~~FgG~~~~~L~iTs 274 (307)
T COG3386 259 NPAFGGPDLNTLYITS 274 (307)
T ss_pred cceEeCCCcCEEEEEe
Confidence 88886 4445444433
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0024 Score=56.99 Aligned_cols=230 Identities=16% Similarity=0.089 Sum_probs=117.4
Q ss_pred CCCCceEEEE---------eCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCC
Q 014125 135 DPTSCVFAST---------TRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPG 205 (430)
Q Consensus 135 ~~~~~~l~~~---------~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~ 205 (430)
|||+++++.. +..+.+.++|+.+++....... . ..+....|+|+|+.++-..++.|.+++...+.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~-----~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~ 74 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-P-----PKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQ 74 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-E-----TTBSEEEE-SSSTEEEEEETTEEEEESSTTSE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-c-----cccccceeecCCCeeEEEecCceEEEECCCCC
Confidence 4566666553 2346799999999765544433 1 26778999999999998889999999876531
Q ss_pred CcccccccccCCCCCC---------CcceEEEEEcCCCCceEEEecCCCe------------------------------
Q 014125 206 RDFEKYSTLKGNKEGQ---------AGIMSAIAFSPTHTGMLAIGSYSQT------------------------------ 246 (430)
Q Consensus 206 ~~~~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~~l~~~~~dg~------------------------------ 246 (430)
..............+- -+.-..+-|+|++..++..-..+..
T Consensus 75 ~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~ 154 (353)
T PF00930_consen 75 ETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDP 154 (353)
T ss_dssp EEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS-
T ss_pred eEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCc
Confidence 1100000000000000 1123567899955544333322322
Q ss_pred -----EEEEEcCCceeeEE-e----eccccCeEEEEEccCCCEEE-EEecCC---CeEEEEeCCCCceEEEEeecccCCc
Q 014125 247 -----SAIYREDNMELLYV-L----HGQEGGVTHVQFSRDGNYLY-TGGRKD---PYILCWDLRKAVQVVYKLYRSSEHT 312 (430)
Q Consensus 247 -----v~~~d~~~~~~~~~-~----~~~~~~i~~~~~~~~~~~l~-~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~ 312 (430)
+.++|+.+++.... . ......+..+.|.++++.|+ .-...+ -.+.++|..++...........+--
T Consensus 155 np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv 234 (353)
T PF00930_consen 155 NPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWV 234 (353)
T ss_dssp --EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSS
T ss_pred CCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcce
Confidence 23344444433211 1 11233578899999988333 332122 2466677766554433332222222
Q ss_pred cceEEEEEc-CCC-CEEEEEccCCc--EEEEEcCCCCeecccccccCCeeE-EEEcCCCcEEEE
Q 014125 313 NQRILFDIE-PSG-RHLGTGGQDGL--VHIYDLQTGKWISGFQAAADTVNG-FSFHPFLPMAAS 371 (430)
Q Consensus 313 ~~v~~~~~~-~~~-~~l~~~~~dg~--i~vwd~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~s 371 (430)
..-....+. +++ .+|.....+|. |++++...+. ...+....-.|.. +.|+++++.|.-
T Consensus 235 ~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf 297 (353)
T PF00930_consen 235 DVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYF 297 (353)
T ss_dssp SSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEE
T ss_pred eeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEE
Confidence 222345554 555 45555556665 5566666555 3344444456644 677888775543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0029 Score=56.43 Aligned_cols=104 Identities=15% Similarity=0.140 Sum_probs=63.5
Q ss_pred cCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCC-CcEEEEeeCCceeeecC---CC
Q 014125 309 SEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPF-LPMAASSSGHRRFPVDD---FE 384 (430)
Q Consensus 309 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~d~~~~vw~---~~ 384 (430)
......+.+++.+|++++.|+...-|+|.++|+.++..++.+++-.+.=......++ +.. .. .......... .-
T Consensus 304 ~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~-~~-~~~~~~~~~~~~~l~ 381 (415)
T PF14655_consen 304 PDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDR-DR-SNSNSPKSSSRFALF 381 (415)
T ss_pred ccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeeccccc-cc-ccccccCCCCcceEE
Confidence 344566888999999999998888899999999999999999876553211111111 000 00 0000000000 00
Q ss_pred ccccccCCCcEEEEeecccccccccCCCCc
Q 014125 385 DLHLSGDENCVSVWSFLYASMMENADGING 414 (430)
Q Consensus 385 ~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~ 414 (430)
.++-+..-|.|.||.+..+..+..++--.+
T Consensus 382 LvIyaprRg~lEvW~~~~g~Rv~a~~v~k~ 411 (415)
T PF14655_consen 382 LVIYAPRRGILEVWSMRQGPRVAAFNVGKG 411 (415)
T ss_pred EEEEeccCCeEEEEecCCCCEEEEEEeCCC
Confidence 123345678999999988888776654433
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0025 Score=57.89 Aligned_cols=222 Identities=12% Similarity=0.125 Sum_probs=110.6
Q ss_pred CCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCC
Q 014125 59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS 138 (430)
Q Consensus 59 h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 138 (430)
..-....+.++|+|++++.++ ||...|+.....+ ....+.-...+| .+ .
T Consensus 31 ~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r----------------------~k~~G~g~~~vw-------~~-~ 79 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWR----------------------NKAFGSGLSFVW-------SS-R 79 (443)
T ss_dssp -SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTE----------------------EEEEEE-SEEEE--------T-S
T ss_pred CCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCc----------------------ccccCceeEEEE-------ec-C
Confidence 344578999999999999844 6788888632110 011135556777 44 3
Q ss_pred ceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccCCC
Q 014125 139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNK 218 (430)
Q Consensus 139 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~ 218 (430)
+.+|+-...+.|.++.--+......++... .+..+-. |.+|....++.|.+||+.+.. .+..+
T Consensus 80 n~yAv~~~~~~I~I~kn~~~~~~k~i~~~~------~~~~If~---G~LL~~~~~~~i~~yDw~~~~----~i~~i---- 142 (443)
T PF04053_consen 80 NRYAVLESSSTIKIYKNFKNEVVKSIKLPF------SVEKIFG---GNLLGVKSSDFICFYDWETGK----LIRRI---- 142 (443)
T ss_dssp SEEEEE-TTS-EEEEETTEE-TT-----SS-------EEEEE----SSSEEEEETTEEEEE-TTT------EEEEE----
T ss_pred ccEEEEECCCeEEEEEcCccccceEEcCCc------ccceEEc---CcEEEEECCCCEEEEEhhHcc----eeeEE----
Confidence 457777778889996432333322333321 2222322 888887777799999998731 11111
Q ss_pred CCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCc-----------eeeEEeeccccCeEEEEEccCCCEEEEEecCC
Q 014125 219 EGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-----------ELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKD 287 (430)
Q Consensus 219 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~-----------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d 287 (430)
. -.+|..+.|++ ++.+++..+. ..+.+++.+.. .....+..-...|.+.+|..+ .++-+. ..
T Consensus 143 ~--v~~vk~V~Ws~-~g~~val~t~-~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT-~~ 215 (443)
T PF04053_consen 143 D--VSAVKYVIWSD-DGELVALVTK-DSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTT-SN 215 (443)
T ss_dssp S--S-E-EEEEE-T-TSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE--TT
T ss_pred e--cCCCcEEEEEC-CCCEEEEEeC-CeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEc-CC
Confidence 1 12388999999 5556666664 45666654322 122233222467899999765 444343 33
Q ss_pred CeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCC
Q 014125 288 PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQT 343 (430)
Q Consensus 288 ~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 343 (430)
.|+- +..+....... -..++.-+.+.|....+.....|+.|..+.++.
T Consensus 216 -~lkY--l~~Ge~~~i~~-----ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 216 -HLKY--LVNGETGIIAH-----LDKPLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp -EEEE--EETTEEEEEEE------SS--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred -eEEE--EEcCCcceEEE-----cCCceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 6765 33443322111 234566677777777888888888888887763
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00057 Score=47.78 Aligned_cols=105 Identities=17% Similarity=0.201 Sum_probs=66.7
Q ss_pred eeeeeeccccCccCCCC-ceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEE
Q 014125 122 VYDFCWFPHMSASDPTS-CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFD 200 (430)
Q Consensus 122 v~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d 200 (430)
|.++++... ..+| +.|++|+.|..|++|+-+ ..+..+.... .|.+++-...+++.++-.+|+|-+|+
T Consensus 2 V~al~~~d~----d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~------~v~~L~~~~~~~F~Y~l~NGTVGvY~ 69 (111)
T PF14783_consen 2 VTALCLFDF----DGDGENELLVGSDDFEIRVFKGD--EIVAEITETD------KVTSLCSLGGGRFAYALANGTVGVYD 69 (111)
T ss_pred eeEEEEEec----CCCCcceEEEecCCcEEEEEeCC--cEEEEEeccc------ceEEEEEcCCCEEEEEecCCEEEEEe
Confidence 455655432 3333 689999999999999844 5555555443 78888887777766677899998887
Q ss_pred cCCCCCcccccccccCCCCCCCcceEEEEEc---CCCCceEEEecCCCeEEE
Q 014125 201 VHRPGRDFEKYSTLKGNKEGQAGIMSAIAFS---PTHTGMLAIGSYSQTSAI 249 (430)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~l~~~~~dg~v~~ 249 (430)
-... .+ +. .....+.++.+. .++..-|++|-.+|.|-+
T Consensus 70 ~~~R--lW------Ri---KSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 70 RSQR--LW------RI---KSKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred Ccce--ee------ee---ccCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 5331 11 10 111224555443 344557899988888753
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.012 Score=54.12 Aligned_cols=248 Identities=19% Similarity=0.153 Sum_probs=126.1
Q ss_pred ceeEEEECcCCceEEEe-cCC----CeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCC
Q 014125 62 FLKGIKWSPDGSSFLTS-SED----KTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP 136 (430)
Q Consensus 62 ~v~~~~~sp~~~~l~s~-~~d----g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 136 (430)
.+...++||||++||.+ +.. ..+++.|+.+++.+... +.. ..-..+.| .+
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~---------------i~~---~~~~~~~W-------~~ 179 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG---------------IEN---PKFSSVSW-------SD 179 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE---------------EEE---EESEEEEE-------CT
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc---------------ccc---cccceEEE-------eC
Confidence 34468899999988854 233 35999999987432110 000 11122788 66
Q ss_pred CCceEEEEeCCC-----------cEEEEeccCCcee--eeeecccccccccceEEEEECCCCcEEEE--E--cC-CeEEE
Q 014125 137 TSCVFASTTRDH-----------PIHLWDATTGLLR--CTYRAYDAVDEITAAFSVAFNPTGTKIFA--G--YN-KSVRV 198 (430)
Q Consensus 137 ~~~~l~~~~~dg-----------~i~vwd~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~--~d-~~i~v 198 (430)
+++.|+....+. .|+.|++.+.... ..+...... .....+..++++++++. . .+ ..+.+
T Consensus 180 d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~---~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~ 256 (414)
T PF02897_consen 180 DGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEP---FWFVSVSRSKDGRYLFISSSSGTSESEVYL 256 (414)
T ss_dssp TSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCT---TSEEEEEE-TTSSEEEEEEESSSSEEEEEE
T ss_pred CCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCC---cEEEEEEecCcccEEEEEEEccccCCeEEE
Confidence 777666554332 3777787766433 333333221 12567889999999883 2 33 45777
Q ss_pred EEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEe---cCCCeEEEEEcCCcee---eEEeeccccCeEEEE
Q 014125 199 FDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIG---SYSQTSAIYREDNMEL---LYVLHGQEGGVTHVQ 272 (430)
Q Consensus 199 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~---~~dg~v~~~d~~~~~~---~~~~~~~~~~i~~~~ 272 (430)
.++............+. ....+....+... ++.+++.. ...+.|...++..... ...+..+...+.-..
T Consensus 257 ~d~~~~~~~~~~~~~l~---~~~~~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~ 331 (414)
T PF02897_consen 257 LDLDDGGSPDAKPKLLS---PREDGVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLED 331 (414)
T ss_dssp EECCCTTTSS-SEEEEE---ESSSS-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEE
T ss_pred EeccccCCCcCCcEEEe---CCCCceEEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEE
Confidence 78766311111111111 1111222333333 34344433 2346777778776642 224444555433334
Q ss_pred EccCCCEEEEEecCCC--eEEEEeCC-CCceEEEEeecccCCccceEEEEEcCCCCEEE-EEcc---CCcEEEEEcCCCC
Q 014125 273 FSRDGNYLYTGGRKDP--YILCWDLR-KAVQVVYKLYRSSEHTNQRILFDIEPSGRHLG-TGGQ---DGLVHIYDLQTGK 345 (430)
Q Consensus 273 ~~~~~~~l~~~~~~d~--~i~i~d~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~---dg~i~vwd~~~~~ 345 (430)
+...+.+|+.....++ .|+++++. ..... ... ....+.+..+...+++..+. +-+. -++++.||+.+++
T Consensus 332 ~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~--~~~--~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 332 VSLFKDYLVLSYRENGSSRLRVYDLDDGKESR--EIP--LPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp EEEETTEEEEEEEETTEEEEEEEETT-TEEEE--EEE--SSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred EEEECCEEEEEEEECCccEEEEEECCCCcEEe--eec--CCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence 4445666776654554 57888888 33222 221 12234455555555554432 2222 3568889998887
Q ss_pred e
Q 014125 346 W 346 (430)
Q Consensus 346 ~ 346 (430)
.
T Consensus 408 ~ 408 (414)
T PF02897_consen 408 L 408 (414)
T ss_dssp E
T ss_pred E
Confidence 5
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0043 Score=54.15 Aligned_cols=262 Identities=14% Similarity=0.048 Sum_probs=119.9
Q ss_pred eeeeccccCccCCCCceEEEEeC-CC--cEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEE
Q 014125 124 DFCWFPHMSASDPTSCVFASTTR-DH--PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVF 199 (430)
Q Consensus 124 ~~~~~~~~~~~~~~~~~l~~~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~ 199 (430)
+-.+.....++.++|+.|+.++. || .+.+.|+.+++..+....... ......++|+++.++ ...+..|+-.
T Consensus 33 ~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~-----~~~g~~~s~~~~~~~Yv~~~~~l~~v 107 (386)
T PF14583_consen 33 SHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGD-----NTFGGFLSPDDRALYYVKNGRSLRRV 107 (386)
T ss_dssp EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B------TTT-EE-TTSSEEEEEETTTEEEEE
T ss_pred ccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCC-----CccceEEecCCCeEEEEECCCeEEEE
Confidence 33333444556888977666554 44 577778988877665544322 222456678888776 6667788888
Q ss_pred EcCCCCCcccccccccCCCCCCCcceEEEEEcCC-CCceEEEe----------------------cCCCeEEEEEcCCce
Q 014125 200 DVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPT-HTGMLAIG----------------------SYSQTSAIYREDNME 256 (430)
Q Consensus 200 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~----------------------~~dg~v~~~d~~~~~ 256 (430)
|+++.... .+. ......+-...|..+ +...++-. -....|.-.|+.+++
T Consensus 108 dL~T~e~~--~vy------~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~ 179 (386)
T PF14583_consen 108 DLDTLEER--VVY------EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGE 179 (386)
T ss_dssp ETTT--EE--EEE------E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--
T ss_pred ECCcCcEE--EEE------ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCc
Confidence 98874221 111 112223333444321 22222211 011345666777777
Q ss_pred eeEEeeccccCeEEEEEccCCCEEEEEecCCC-----eEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEc
Q 014125 257 LLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDP-----YILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGG 331 (430)
Q Consensus 257 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~-----~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 331 (430)
....+. ....+..+.|+|....+++-| ..| .-|||-+++......++... .....+..=-|.|||..|.--+
T Consensus 180 ~~~v~~-~~~wlgH~~fsP~dp~li~fC-HEGpw~~Vd~RiW~i~~dg~~~~~v~~~-~~~e~~gHEfw~~DG~~i~y~~ 256 (386)
T PF14583_consen 180 RKVVFE-DTDWLGHVQFSPTDPTLIMFC-HEGPWDLVDQRIWTINTDGSNVKKVHRR-MEGESVGHEFWVPDGSTIWYDS 256 (386)
T ss_dssp EEEEEE-ESS-EEEEEEETTEEEEEEEE-E-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-TTSS-EEEEE
T ss_pred eeEEEe-cCccccCcccCCCCCCEEEEe-ccCCcceeceEEEEEEcCCCcceeeecC-CCCcccccccccCCCCEEEEEe
Confidence 655554 456788999999877777766 444 23677776655544444332 2344556667899998765432
Q ss_pred -----cCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCCCccccccCCCcEEEEeecccc
Q 014125 332 -----QDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYAS 404 (430)
Q Consensus 332 -----~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~ 404 (430)
.+..|.-+|+.+++...... ......+.-+++|.+++-=+.|.-+.+-+... .....+..|+++++..+.
T Consensus 257 ~~~~~~~~~i~~~d~~t~~~~~~~~--~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~-~~~~~~p~i~~~~~~~~~ 331 (386)
T PF14583_consen 257 YTPGGQDFWIAGYDPDTGERRRLME--MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGG-YKIENDPWIYLFDVEAGR 331 (386)
T ss_dssp EETTT--EEEEEE-TTT--EEEEEE--E-SEEEEEE-TTSSEEEEEE--------------------EEEEEETTTTE
T ss_pred ecCCCCceEEEeeCCCCCCceEEEe--CCceeeeEEcCCCCEEEecCCCCCcccccccc-ceecCCcEEEEeccccCc
Confidence 24457778888876543222 22455666678888887655543333211100 011234566666665444
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0084 Score=52.38 Aligned_cols=267 Identities=18% Similarity=0.203 Sum_probs=121.4
Q ss_pred eeEEEECcCCceEEEecC-CCe--EEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCc
Q 014125 63 LKGIKWSPDGSSFLTSSE-DKT--LRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC 139 (430)
Q Consensus 63 v~~~~~sp~~~~l~s~~~-dg~--v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (430)
-+.=+|.+||+.|+.++. ||. +.+.|+.+++.. .+.-..+.......+ +++.+
T Consensus 38 F~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~-----------------QLTdg~g~~~~g~~~-------s~~~~ 93 (386)
T PF14583_consen 38 FYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEIT-----------------QLTDGPGDNTFGGFL-------SPDDR 93 (386)
T ss_dssp TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEE-----------------E---SS-B-TTT-EE--------TTSS
T ss_pred ecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEE-----------------ECccCCCCCccceEE-------ecCCC
Confidence 344567889976665544 554 555566655321 011111111222333 56677
Q ss_pred eEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEE--CCCCcEEEEE----cC-------------------C
Q 014125 140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAF--NPTGTKIFAG----YN-------------------K 194 (430)
Q Consensus 140 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~----~d-------------------~ 194 (430)
.++-......++-.|+.+.+....+..... -+-...| +.++..++.. .+ .
T Consensus 94 ~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~-----~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~ 168 (386)
T PF14583_consen 94 ALYYVKNGRSLRRVDLDTLEERVVYEVPDD-----WKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHC 168 (386)
T ss_dssp EEEEEETTTEEEEEETTT--EEEEEE--TT-----EEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---E
T ss_pred eEEEEECCCeEEEEECCcCcEEEEEECCcc-----cccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCc
Confidence 776665667899999999887666666553 2222333 4566666532 11 1
Q ss_pred eEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCC------CeEEEEEcCCceeeEEeeccc--c
Q 014125 195 SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS------QTSAIYREDNMELLYVLHGQE--G 266 (430)
Q Consensus 195 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~v~~~d~~~~~~~~~~~~~~--~ 266 (430)
.|.-.|+.++.. +. .......+..+.|+|.+..+|+.|-+. ..|.+.+.... ....+..+. .
T Consensus 169 ~i~~idl~tG~~--~~-------v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~-~~~~v~~~~~~e 238 (386)
T PF14583_consen 169 RIFTIDLKTGER--KV-------VFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGS-NVKKVHRRMEGE 238 (386)
T ss_dssp EEEEEETTT--E--EE-------EEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS----EESS---TTE
T ss_pred eEEEEECCCCce--eE-------EEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCC-cceeeecCCCCc
Confidence 233333333211 00 012234678899999888888876542 24444444332 223332222 3
Q ss_pred CeEEEEEccCCCEEEEEec----CCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCC--------
Q 014125 267 GVTHVQFSRDGNYLYTGGR----KDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDG-------- 334 (430)
Q Consensus 267 ~i~~~~~~~~~~~l~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-------- 334 (430)
.+..=-|.|||..|..-+. .+..|.-+|+.+..... +.. ......+-.+++|++++-=+.|.
T Consensus 239 ~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~--~~~----~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~ 312 (386)
T PF14583_consen 239 SVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRR--LME----MPWCSHFMSSPDGKLFVGDGGDAPVDVADAG 312 (386)
T ss_dssp EEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEE--EEE----E-SEEEEEE-TTSSEEEEEE-----------
T ss_pred ccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceE--EEe----CCceeeeEEcCCCCEEEecCCCCCccccccc
Confidence 4555678999987665331 24467778888765432 111 11234566688988876444432
Q ss_pred --------cEEEEEcCCCCeec---------ccccccC-CeeEEEEcCCCcEEEEeeC
Q 014125 335 --------LVHIYDLQTGKWIS---------GFQAAAD-TVNGFSFHPFLPMAASSSG 374 (430)
Q Consensus 335 --------~i~vwd~~~~~~~~---------~~~~~~~-~v~~~~~~~~~~~l~s~~~ 374 (430)
-|+++++..++... .+.++.. .=....|+||+++++-.|.
T Consensus 313 ~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd 370 (386)
T PF14583_consen 313 GYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSD 370 (386)
T ss_dssp --------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-
T ss_pred cceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECC
Confidence 46677877655421 1111111 1246799999997776664
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0019 Score=52.16 Aligned_cols=129 Identities=12% Similarity=0.093 Sum_probs=89.5
Q ss_pred EEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecc
Q 014125 229 AFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRS 308 (430)
Q Consensus 229 ~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~ 308 (430)
..-++...+++.|+..+.+.-.|..+++...... -...|.+-+.- -|++++.++ ..|.+++.+..++.+.......
T Consensus 17 VV~~dskT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GC-y~g~lYfl~~~tGs~~w~f~~~- 92 (354)
T KOG4649|consen 17 VVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGC-YSGGLYFLCVKTGSQIWNFVIL- 92 (354)
T ss_pred EEecCCceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEE-ccCcEEEEEecchhheeeeeeh-
Confidence 3445567789999999999999999998776543 22334433322 467889999 9999999999998655433221
Q ss_pred cCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcC
Q 014125 309 SEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHP 364 (430)
Q Consensus 309 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 364 (430)
..--......+++..+..|+.|+..+..|..+...+...+-..+.-.+-+..|
T Consensus 93 ---~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~ 145 (354)
T KOG4649|consen 93 ---ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAP 145 (354)
T ss_pred ---hhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecC
Confidence 11112344578899999999999999999999888887664433333334444
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=7.2e-05 Score=68.31 Aligned_cols=133 Identities=14% Similarity=0.185 Sum_probs=93.6
Q ss_pred EEcCCCCceEEEecCCCeEEEEEcCCceeeEE-eeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeec
Q 014125 229 AFSPTHTGMLAIGSYSQTSAIYREDNMELLYV-LHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYR 307 (430)
Q Consensus 229 ~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~ 307 (430)
+++. ...+++.|+..|.+++|+...++.... ..+-.+.+..+..+++..++++++ ..|.|.++-+.........+..
T Consensus 40 c~ds-t~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt-~~g~V~v~ql~~~~p~~~~~~t 117 (726)
T KOG3621|consen 40 CVDA-TEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGT-ASGRVSVFQLNKELPRDLDYVT 117 (726)
T ss_pred Eeec-CCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhc-CCceEEeehhhccCCCcceeec
Confidence 3444 566999999999999999877654332 223345666777888888888888 9999999988764333222222
Q ss_pred --ccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCC----CeecccccccCCeeEEEEc
Q 014125 308 --SSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTG----KWISGFQAAADTVNGFSFH 363 (430)
Q Consensus 308 --~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~ 363 (430)
...|...|++++|++++..+++|...|.|..-.+++. ...+.+-...+.|-.+...
T Consensus 118 ~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 118 PCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred cccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence 2346889999999999999999999999999888872 1122222334556666554
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00016 Score=66.11 Aligned_cols=158 Identities=16% Similarity=0.155 Sum_probs=99.0
Q ss_pred ceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcC
Q 014125 175 AAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED 253 (430)
Q Consensus 175 ~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~ 253 (430)
.+.--+++..+++++.| .-|.+++|+-..+.. ......+..+.+..+..++ ...++|.|+..|.|.++-+.
T Consensus 35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~-------~~~~~~~~~~~~~~~~vs~-~e~lvAagt~~g~V~v~ql~ 106 (726)
T KOG3621|consen 35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEM-------RKLKNEGATGITCVRSVSS-VEYLVAAGTASGRVSVFQLN 106 (726)
T ss_pred eEEEEEeecCCceEEEecccceEEEEecCchhh-------hcccccCccceEEEEEecc-hhHhhhhhcCCceEEeehhh
Confidence 34444566678888855 789999998765321 1111233445667777888 77799999999999999877
Q ss_pred Cceee-----EEe-eccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEE
Q 014125 254 NMELL-----YVL-HGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHL 327 (430)
Q Consensus 254 ~~~~~-----~~~-~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 327 (430)
...+. ... ..|...|++++|++++..+++|. ..|+|.+-.+.................+.|..+.... +.+|
T Consensus 107 ~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD-~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q-~~LL 184 (726)
T KOG3621|consen 107 KELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGD-SQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ-SYLL 184 (726)
T ss_pred ccCCCcceeeccccccCCceEEEEEecccccEEeecC-CCceEEEEEechhhhhccccceeeccCcceEEeeccc-ceeh
Confidence 64321 111 23677899999999999999999 8999998887762111111111123455666666543 3333
Q ss_pred EEEccCCcEEEEEcCCC
Q 014125 328 GTGGQDGLVHIYDLQTG 344 (430)
Q Consensus 328 ~~~~~dg~i~vwd~~~~ 344 (430)
++... +-.+++++.+
T Consensus 185 VStl~--r~~Lc~tE~e 199 (726)
T KOG3621|consen 185 VSTLT--RCILCQTEAE 199 (726)
T ss_pred Hhhhh--hhheeecchh
Confidence 33322 2334555543
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0081 Score=52.92 Aligned_cols=213 Identities=12% Similarity=0.150 Sum_probs=113.4
Q ss_pred eeecCCCeeeeeeeccccCccCCCCceEEEEeC----------CCcEEEEeccCC-ceeeeeecccccccccceEEEEEC
Q 014125 114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTR----------DHPIHLWDATTG-LLRCTYRAYDAVDEITAAFSVAFN 182 (430)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~----------dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~~ 182 (430)
..+...+.+.+++.......-.....+|++|.. .|.|.++++... .....+.........++|++++--
T Consensus 18 ~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~ 97 (321)
T PF03178_consen 18 FELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF 97 (321)
T ss_dssp EEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE
T ss_pred EECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh
Confidence 344445566666543321100012467777643 288999999884 111111111111223478888755
Q ss_pred CCCcEEEEEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCC-ceeeEEe
Q 014125 183 PTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN-MELLYVL 261 (430)
Q Consensus 183 ~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~-~~~~~~~ 261 (430)
+..|+++.++.|.+|++.... .+..... ......+.++.... +++++|.....+.++..+. ...+..+
T Consensus 98 --~~~lv~~~g~~l~v~~l~~~~-~l~~~~~-----~~~~~~i~sl~~~~---~~I~vgD~~~sv~~~~~~~~~~~l~~v 166 (321)
T PF03178_consen 98 --NGRLVVAVGNKLYVYDLDNSK-TLLKKAF-----YDSPFYITSLSVFK---NYILVGDAMKSVSLLRYDEENNKLILV 166 (321)
T ss_dssp --TTEEEEEETTEEEEEEEETTS-SEEEEEE-----E-BSSSEEEEEEET---TEEEEEESSSSEEEEEEETTTE-EEEE
T ss_pred --CCEEEEeecCEEEEEEccCcc-cchhhhe-----ecceEEEEEEeccc---cEEEEEEcccCEEEEEEEccCCEEEEE
Confidence 445888888999999998754 1111111 11122567776653 4899999888888875443 2222222
Q ss_pred e--ccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCC------ce-EEEEeecccCCccceEEE---EEcCC--C---
Q 014125 262 H--GQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKA------VQ-VVYKLYRSSEHTNQRILF---DIEPS--G--- 324 (430)
Q Consensus 262 ~--~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~------~~-~~~~~~~~~~~~~~v~~~---~~~~~--~--- 324 (430)
. .....++++.|-++++.++++. .+|.+.++..... .. ....... ......|+++ ++.|. +
T Consensus 167 a~d~~~~~v~~~~~l~d~~~~i~~D-~~gnl~~l~~~~~~~~~~~~~~~L~~~~~-f~lg~~v~~~~~~~l~~~~~~~~~ 244 (321)
T PF03178_consen 167 ARDYQPRWVTAAEFLVDEDTIIVGD-KDGNLFVLRYNPEIPNSRDGDPKLERISS-FHLGDIVNSFRRGSLIPRSGSSES 244 (321)
T ss_dssp EEESS-BEEEEEEEE-SSSEEEEEE-TTSEEEEEEE-SS-SSTTTTTTBEEEEEE-EE-SS-EEEEEE--SS--SSSS-T
T ss_pred EecCCCccEEEEEEecCCcEEEEEc-CCCeEEEEEECCCCcccccccccceeEEE-EECCCccceEEEEEeeecCCCCcc
Confidence 2 2345688999987777888888 9999999987631 11 1111111 1223456666 44451 2
Q ss_pred ---CEEEEEccCCcEEEE
Q 014125 325 ---RHLGTGGQDGLVHIY 339 (430)
Q Consensus 325 ---~~l~~~~~dg~i~vw 339 (430)
..++.++.+|.|.+.
T Consensus 245 ~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 245 PNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp TEEEEEEEEETTS-EEEE
T ss_pred cccceEEEEecCCEEEEE
Confidence 247788889988843
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0099 Score=51.09 Aligned_cols=239 Identities=12% Similarity=0.067 Sum_probs=131.1
Q ss_pred CCceEEEEeCCCcEEEEeccC-CceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccc-cc
Q 014125 137 TSCVFASTTRDHPIHLWDATT-GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYS-TL 214 (430)
Q Consensus 137 ~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~-~~ 214 (430)
.++.|+.|..+| +.+++... ......... ..|..+...|+-..+++=.|+.+.++++..-........ ..
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~-------~~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~ 77 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILKL-------SSITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAF 77 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEeec-------ceEEEEEEecccCEEEEEcCCccEEEEchhhccccccccccc
Confidence 577899999999 99999832 222222221 158888888888888876779999999876332221100 00
Q ss_pred -c----CCCCCCCcceEEEE-EcCCCCceEEEecCCCeEEEEEcCCc-----eeeEEeeccccCeEEEEEccCCCEEEEE
Q 014125 215 -K----GNKEGQAGIMSAIA-FSPTHTGMLAIGSYSQTSAIYREDNM-----ELLYVLHGQEGGVTHVQFSRDGNYLYTG 283 (430)
Q Consensus 215 -~----~~~~~~~~~v~~~~-~~~~~~~~l~~~~~dg~v~~~d~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 283 (430)
. .........+..++ -....+...++.....+|.+|..... +..+.+. -...+.+++|. ++.++.+
T Consensus 78 ~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~ 154 (275)
T PF00780_consen 78 PKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVG 154 (275)
T ss_pred cccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEE
Confidence 0 00112223344444 11223334444444568888876653 3445554 34778999997 5567777
Q ss_pred ecCCCeEEEEeCCCCceEEEEeecc--------cCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeec-cccccc
Q 014125 284 GRKDPYILCWDLRKAVQVVYKLYRS--------SEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWIS-GFQAAA 354 (430)
Q Consensus 284 ~~~d~~i~i~d~~~~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~ 354 (430)
. .+...+.|+.++.......... .....++..+... ++.+|++- |..-.+.|. .|++.+ ..-.-.
T Consensus 155 ~--~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~W~ 228 (275)
T PF00780_consen 155 T--SKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNK-NGEPSRKSTIQWS 228 (275)
T ss_pred e--CCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcC-CCCcCcccEEEcC
Confidence 6 4557888998654322111000 0112234344433 45666653 333333333 454433 111122
Q ss_pred CCeeEEEEcCCCcEEEEeeCCceeeecCCCccccccCCCcEEEEeecccccccccCCC
Q 014125 355 DTVNGFSFHPFLPMAASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYASMMENADGI 412 (430)
Q Consensus 355 ~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~ 412 (430)
..+.++++. .++|+... ++.|.||++..+++++.+.+.
T Consensus 229 ~~p~~~~~~--~pyli~~~------------------~~~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 229 SAPQSVAYS--SPYLIAFS------------------SNSIEVRSLETGELVQTIPLP 266 (275)
T ss_pred CchhEEEEE--CCEEEEEC------------------CCEEEEEECcCCcEEEEEECC
Confidence 344555553 34555553 466999999999888877754
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.015 Score=52.85 Aligned_cols=184 Identities=9% Similarity=0.133 Sum_probs=87.5
Q ss_pred CeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccc----cceEEEEECCCCcEEEEEcCCe
Q 014125 120 ESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEI----TAAFSVAFNPTGTKIFAGYNKS 195 (430)
Q Consensus 120 ~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~d~~ 195 (430)
+.+.++.| +. ...|+....||.++++|+... . .+......... ..+....+...|-.+++ .++.
T Consensus 81 ~~iv~~~w-------t~-~e~LvvV~~dG~v~vy~~~G~-~--~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt-~~~~ 148 (410)
T PF04841_consen 81 GRIVGMGW-------TD-DEELVVVQSDGTVRVYDLFGE-F--QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT-GNNR 148 (410)
T ss_pred CCEEEEEE-------CC-CCeEEEEEcCCEEEEEeCCCc-e--eechhhhccccCcccccccccccCCCCEEEEC-CCCe
Confidence 67888888 44 456777789999999998633 3 22222111111 01222233335533333 3444
Q ss_pred EEEEEcCCCCCcccccccccCCC---CCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEE
Q 014125 196 VRVFDVHRPGRDFEKYSTLKGNK---EGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQ 272 (430)
Q Consensus 196 i~v~d~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~ 272 (430)
+.+..-.......+......... ...........++. .....+....++.+.+.+....+. +. ..+++..++
T Consensus 149 ~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~-~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~ia 223 (410)
T PF04841_consen 149 FYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSS-DRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIA 223 (410)
T ss_pred EEEEeCccccchhhccccCCCcccccccccccccceEeec-CcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEE
Confidence 43332211110000000110000 01111000122333 233344444455566444332211 22 246899999
Q ss_pred EccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCC
Q 014125 273 FSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSG 324 (430)
Q Consensus 273 ~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 324 (430)
.||+|++++.-. .+|.+.+....-.+... ... .........+.|.-+.
T Consensus 224 vSpng~~iAl~t-~~g~l~v~ssDf~~~~~-e~~--~~~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 224 VSPNGKFIALFT-DSGNLWVVSSDFSEKLC-EFD--TDSKSPPKQMAWCGND 271 (410)
T ss_pred ECCCCCEEEEEE-CCCCEEEEECcccceeE-Eee--cCcCCCCcEEEEECCC
Confidence 999999999988 88999888764432221 211 1223445566666543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.93 E-value=2.4e-05 Score=43.84 Aligned_cols=36 Identities=22% Similarity=0.477 Sum_probs=32.3
Q ss_pred eeecccCCCceeEEEECcCCceEEEecCCCeEEEEe
Q 014125 53 FRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFS 88 (430)
Q Consensus 53 ~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~ 88 (430)
...+..|...|+++.|+|++.++++++.|+.+++|+
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345668899999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0001 Score=66.53 Aligned_cols=94 Identities=20% Similarity=0.148 Sum_probs=77.0
Q ss_pred cceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeE-EEEEccCCCEEEEEecCCCeEEEEeCCCCceE
Q 014125 223 GIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVT-HVQFSRDGNYLYTGGRKDPYILCWDLRKAVQV 301 (430)
Q Consensus 223 ~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~ 301 (430)
..+.-+.|+| ...++|.+..+|.|.++.++ .+.+.++..+...++ +++|.|||+.|++|- .||+|++.|+.++...
T Consensus 21 ~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~-kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 21 INIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGF-KDGTIRLHDVEKGGRL 97 (665)
T ss_pred cceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEe-cCCeEEEEEccCCCce
Confidence 3578899999 78899999999999999998 777888886777777 999999999999999 9999999999988655
Q ss_pred EEEeecccCCccceEEEEEcC
Q 014125 302 VYKLYRSSEHTNQRILFDIEP 322 (430)
Q Consensus 302 ~~~~~~~~~~~~~v~~~~~~~ 322 (430)
.... ......|.++-|++
T Consensus 98 ~~~~---~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFL---FSVETDISKGIWDR 115 (665)
T ss_pred eccc---cccccchheeeccc
Confidence 4321 23455677777764
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.026 Score=53.14 Aligned_cols=211 Identities=11% Similarity=0.070 Sum_probs=111.9
Q ss_pred CceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEE
Q 014125 72 GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIH 151 (430)
Q Consensus 72 ~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 151 (430)
+..|+.++.++.|.-.|..+++..-........ .. ....+........ .-.+..++.++.|+.+.
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~----~~---------~~~~~~~~~~rg~--av~~~~v~v~t~dg~l~ 133 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPD----DV---------IPVMCCDVVNRGV--ALYDGKVFFGTLDARLV 133 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCc----cc---------ccccccccccccc--eEECCEEEEEcCCCEEE
Confidence 456777777888888898888654332211000 00 0000000000000 00234677788899999
Q ss_pred EEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE------cCCeEEEEEcCCCCCcccccccccC---------
Q 014125 152 LWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG------YNKSVRVFDVHRPGRDFEKYSTLKG--------- 216 (430)
Q Consensus 152 vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~------~d~~i~v~d~~~~~~~~~~~~~~~~--------- 216 (430)
-.|..+|+.+.......... ...+.+--.--++..++.. .+|.|.-+|.+++...+........
T Consensus 134 ALDa~TGk~~W~~~~~~~~~-~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~ 212 (527)
T TIGR03075 134 ALDAKTGKVVWSKKNGDYKA-GYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADK 212 (527)
T ss_pred EEECCCCCEEeecccccccc-cccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCccccccccc
Confidence 99999999887765432110 0011111011144444432 2578888888876554432211110
Q ss_pred ----C-----------CCCCCcceEEEEEcCCCCceEEEecCC-----C-----------eEEEEEcCCceeeEEeeccc
Q 014125 217 ----N-----------KEGQAGIMSAIAFSPTHTGMLAIGSYS-----Q-----------TSAIYREDNMELLYVLHGQE 265 (430)
Q Consensus 217 ----~-----------~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g-----------~v~~~d~~~~~~~~~~~~~~ 265 (430)
. ..+....-..+++.| ..+++..+..+ + .|.-.|+++++....++...
T Consensus 213 ~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~-~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~ 291 (527)
T TIGR03075 213 PVGGEPGAKTWPGDAWKTGGGATWGTGSYDP-ETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTP 291 (527)
T ss_pred ccccccccCCCCCCccccCCCCccCceeEcC-CCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCC
Confidence 0 001112223457777 45566555422 2 57778899999887776432
Q ss_pred cCeE---------EEEEccCCC---EEEEEecCCCeEEEEeCCCCce
Q 014125 266 GGVT---------HVQFSRDGN---YLYTGGRKDPYILCWDLRKAVQ 300 (430)
Q Consensus 266 ~~i~---------~~~~~~~~~---~l~~~~~~d~~i~i~d~~~~~~ 300 (430)
..+. -+....+|+ .++.+. .+|.+++.|.++++.
T Consensus 292 ~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~-K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 292 HDEWDYDGVNEMILFDLKKDGKPRKLLAHAD-RNGFFYVLDRTNGKL 337 (527)
T ss_pred CCCccccCCCCcEEEEeccCCcEEEEEEEeC-CCceEEEEECCCCce
Confidence 2221 122334665 566666 999999999998854
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.035 Score=52.28 Aligned_cols=31 Identities=23% Similarity=0.403 Sum_probs=26.0
Q ss_pred CCCEEEEEccCCcEEEEEcCCCCeecccccc
Q 014125 323 SGRHLGTGGQDGLVHIYDLQTGKWISGFQAA 353 (430)
Q Consensus 323 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 353 (430)
.+.+++.++.+|.++.+|.++|+.+..++..
T Consensus 471 ~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 471 AGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred CCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 3557778888999999999999999887654
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.015 Score=48.18 Aligned_cols=181 Identities=10% Similarity=0.134 Sum_probs=109.6
Q ss_pred ccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCC
Q 014125 57 SIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP 136 (430)
Q Consensus 57 ~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 136 (430)
.|-...|.++.|+|+.+.|++......-.||=...|+.....+.. .+ +.--.+.| ..
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~-------------g~---~DpE~Iey-------ig 138 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLT-------------GF---SDPETIEY-------IG 138 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccc-------------cc---CChhHeEE-------ec
Confidence 344555999999999999988888777777765556544332221 11 12223333 44
Q ss_pred CCceEEEEeCCCcEEEEeccCCceeee-----eecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccc
Q 014125 137 TSCVFASTTRDHPIHLWDATTGLLRCT-----YRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEK 210 (430)
Q Consensus 137 ~~~~l~~~~~dg~i~vwd~~~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~ 210 (430)
++.+.++--+++.+.++.+..+..... ++...........-.++|.|....+... ..+-+.||.+.........
T Consensus 139 ~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~ 218 (316)
T COG3204 139 GNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSV 218 (316)
T ss_pred CCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCccccc
Confidence 566777777788888888776533222 2222221223356689999999888865 6666777777643222211
Q ss_pred ccccc--CCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEe
Q 014125 211 YSTLK--GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVL 261 (430)
Q Consensus 211 ~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~ 261 (430)
..... ....-.-..++++.|++..+.+++-+.+++.+.-.|.. +.++..+
T Consensus 219 ~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~l 270 (316)
T COG3204 219 HASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELL 270 (316)
T ss_pred ccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecC-CCeeeeE
Confidence 11110 00011124578899999888889999999999888876 4434333
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.025 Score=53.68 Aligned_cols=185 Identities=13% Similarity=0.083 Sum_probs=96.6
Q ss_pred ceEEEEECCCCcEEEEEc-------CC--eEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecC--
Q 014125 175 AAFSVAFNPTGTKIFAGY-------NK--SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY-- 243 (430)
Q Consensus 175 ~v~~~~~~~~~~~l~~~~-------d~--~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-- 243 (430)
.+.+.+++|+|+.++... |. .|.+++. ++.. .. + ..+. ..+.-.|+|++. .+++...
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~--gg~~-~~---l---t~g~--~~t~PsWspDG~-~lw~v~dg~ 418 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL--GGVA-VQ---V---LEGH--SLTRPSWSLDAD-AVWVVVDGN 418 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC--CCcc-ee---e---ecCC--CCCCceECCCCC-ceEEEecCc
Confidence 567899999999888332 33 4444453 2211 11 1 1111 266778999544 3333321
Q ss_pred ----------CCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEE---EeCCCCceEEEEeecc-c
Q 014125 244 ----------SQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILC---WDLRKAVQVVYKLYRS-S 309 (430)
Q Consensus 244 ----------dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i---~d~~~~~~~~~~~~~~-~ 309 (430)
.+.+.+.+++.+.... ...+.|..+.|||||..++... ++.|.+ -....+...+...... .
T Consensus 419 ~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~~~l~~~~~l~~ 493 (591)
T PRK13616 419 TVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQYALTNPREVGP 493 (591)
T ss_pred ceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCceeecccEEeec
Confidence 2334444444433322 2346799999999999999876 577777 3433332111111111 1
Q ss_pred CCccceEEEEEcCCCCEEEEEccCCcEEEEEcCC-CCeeccccc--ccCCeeEEEEcCCCcEEEEeeCCceee
Q 014125 310 EHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQT-GKWISGFQA--AADTVNGFSFHPFLPMAASSSGHRRFP 379 (430)
Q Consensus 310 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~d~~~~ 379 (430)
.....+..+.|.+++.++ ++..++...+|.+.- |.....+.. ...++.+++=+++ .+.....++.+.
T Consensus 494 ~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 494 GLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ 563 (591)
T ss_pred ccCCccccceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence 223345789999998855 555554444554431 222222222 2446667766653 233444444333
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00024 Score=39.50 Aligned_cols=38 Identities=50% Similarity=0.781 Sum_probs=32.7
Q ss_pred eeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEe
Q 014125 256 ELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWD 294 (430)
Q Consensus 256 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d 294 (430)
+....+..|...|.++.|++.+..+++++ .|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASAS-DDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEec-CCCeEEEcC
Confidence 44556667888999999999999999998 999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00044 Score=62.61 Aligned_cols=93 Identities=13% Similarity=0.224 Sum_probs=72.2
Q ss_pred cCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceE-EEEEcCCCCEEEEEccCCcEEEEEcCCC
Q 014125 266 GGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRI-LFDIEPSGRHLGTGGQDGLVHIYDLQTG 344 (430)
Q Consensus 266 ~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 344 (430)
..+..+.|+|.-..+|.+. .+|.|.+..+. ..+. .....+...++ +++|.|||+.||.|-.||+|++.|+.++
T Consensus 21 ~~i~~~ewnP~~dLiA~~t-~~gelli~R~n-~qRl----wtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~ 94 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRT-EKGELLIHRLN-WQRL----WTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKG 94 (665)
T ss_pred cceEEEEEcCccchhheec-cCCcEEEEEec-ccee----EeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCC
Confidence 4678899999999999999 99999998887 3222 22233445555 9999999999999999999999999999
Q ss_pred Ceecccc-cccCCeeEEEEcC
Q 014125 345 KWISGFQ-AAADTVNGFSFHP 364 (430)
Q Consensus 345 ~~~~~~~-~~~~~v~~~~~~~ 364 (430)
..+..+. .-...|.++-|.+
T Consensus 95 ~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 95 GRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred Cceeccccccccchheeeccc
Confidence 8877632 2344677777763
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.029 Score=46.33 Aligned_cols=202 Identities=15% Similarity=0.106 Sum_probs=108.3
Q ss_pred ceEEEEECCCCcEEE-EE-cC-CeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecC-----CCe
Q 014125 175 AAFSVAFNPTGTKIF-AG-YN-KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY-----SQT 246 (430)
Q Consensus 175 ~v~~~~~~~~~~~l~-~~-~d-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg~ 246 (430)
....++|+|....-+ .. .- -...++|......+.........++.+|. .|+|++. +|...-. -|.
T Consensus 69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHG------vfs~dG~-~LYATEndfd~~rGV 141 (366)
T COG3490 69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHG------VFSPDGR-LLYATENDFDPNRGV 141 (366)
T ss_pred ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeeccc------ccCCCCc-EEEeecCCCCCCCce
Confidence 344688888765544 23 33 34678888775544333333333444443 6899554 5544332 377
Q ss_pred EEEEEcCCc-eeeEEeeccccCeEEEEEccCCCEEEEEec-----------------CCCeEEEEeCCCCceEEEEeecc
Q 014125 247 SAIYREDNM-ELLYVLHGQEGGVTHVQFSRDGNYLYTGGR-----------------KDPYILCWDLRKAVQVVYKLYRS 308 (430)
Q Consensus 247 v~~~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----------------~d~~i~i~d~~~~~~~~~~~~~~ 308 (430)
|-+||.+.+ ..+..+..|.-.-..+.+.+||+.++.+.. +...+.+.|..++....+.....
T Consensus 142 iGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~ 221 (366)
T COG3490 142 IGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPA 221 (366)
T ss_pred EEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCch
Confidence 999998854 456677788777889999999998887651 11123333333332111111111
Q ss_pred cCCccceEEEEEcCCCCEEEEEccCCc-----EEEEEcCCCCeeccccc-------ccCCeeEEEEcCCCcEEEEeeC-C
Q 014125 309 SEHTNQRILFDIEPSGRHLGTGGQDGL-----VHIYDLQTGKWISGFQA-------AADTVNGFSFHPFLPMAASSSG-H 375 (430)
Q Consensus 309 ~~~~~~v~~~~~~~~~~~l~~~~~dg~-----i~vwd~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~s~~~-d 375 (430)
..+...+..++..+||+.++.+-..|. -.|=-...++++.-+.. ...-|-+|+.+.+..+++..+- -
T Consensus 222 ~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~G 301 (366)
T COG3490 222 SLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRG 301 (366)
T ss_pred hhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCC
Confidence 134456777888888876665443321 11111233444443332 2234667777655444444333 3
Q ss_pred ceeeecCC
Q 014125 376 RRFPVDDF 383 (430)
Q Consensus 376 ~~~~vw~~ 383 (430)
+...+||.
T Consensus 302 N~~vi~da 309 (366)
T COG3490 302 NRAVIWDA 309 (366)
T ss_pred CeEEEEEc
Confidence 34445543
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.017 Score=54.85 Aligned_cols=193 Identities=11% Similarity=0.104 Sum_probs=98.5
Q ss_pred CceeEEEECcCCceEEEec------CCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCcc
Q 014125 61 NFLKGIKWSPDGSSFLTSS------EDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS 134 (430)
Q Consensus 61 ~~v~~~~~sp~~~~l~s~~------~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 134 (430)
..+.+.++||||+.+|..- .|+.-.||-...+.. . .....+.....-.|
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~----------------~--~~lt~g~~~t~PsW------- 404 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV----------------A--VQVLEGHSLTRPSW------- 404 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCc----------------c--eeeecCCCCCCceE-------
Confidence 4678899999999887665 244334443221110 0 11111223556667
Q ss_pred CCCCceEEEEeCC------------CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcC
Q 014125 135 DPTSCVFASTTRD------------HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVH 202 (430)
Q Consensus 135 ~~~~~~l~~~~~d------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~ 202 (430)
+|+|..+++.... +.+.+.++..+.... . ....|..+.|+|||..++.-.++.|.+--+.
T Consensus 405 spDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~-----~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vv 476 (591)
T PRK13616 405 SLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---R-----VPGPISELQLSRDGVRAAMIIGGKVYLAVVE 476 (591)
T ss_pred CCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---c-----cCCCcCeEEECCCCCEEEEEECCEEEEEEEE
Confidence 6777766666432 233333443332221 0 1127899999999999985556788774443
Q ss_pred CCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEE--EcCCceeeEEeec--cccCeEEEEEccCCC
Q 014125 203 RPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIY--REDNMELLYVLHG--QEGGVTHVQFSRDGN 278 (430)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~--d~~~~~~~~~~~~--~~~~i~~~~~~~~~~ 278 (430)
......................+..+.|.+ ++.+ +++..++...+| ++.... ...+.. ...++.+++-++.
T Consensus 477 r~~~G~~~l~~~~~l~~~l~~~~~~l~W~~-~~~L-~V~~~~~~~~v~~v~vDG~~-~~~~~~~n~~~~v~~vaa~~~-- 551 (591)
T PRK13616 477 QTEDGQYALTNPREVGPGLGDTAVSLDWRT-GDSL-VVGRSDPEHPVWYVNLDGSN-SDALPSRNLSAPVVAVAASPS-- 551 (591)
T ss_pred eCCCCceeecccEEeecccCCccccceEec-CCEE-EEEecCCCCceEEEecCCcc-ccccCCCCccCceEEEecCCc--
Confidence 311111111111111122233467889998 4444 455554444444 444222 112122 2456777777763
Q ss_pred EEEEEecCCCeEEE
Q 014125 279 YLYTGGRKDPYILC 292 (430)
Q Consensus 279 ~l~~~~~~d~~i~i 292 (430)
.++++. .++.+.+
T Consensus 552 ~iyv~~-~~g~~~l 564 (591)
T PRK13616 552 TVYVTD-ARAVLQL 564 (591)
T ss_pred eEEEEc-CCceEEe
Confidence 455555 5665544
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0044 Score=50.87 Aligned_cols=199 Identities=14% Similarity=0.108 Sum_probs=106.2
Q ss_pred EECcCCceEEEecCC-----CeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceE
Q 014125 67 KWSPDGSSFLTSSED-----KTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF 141 (430)
Q Consensus 67 ~~sp~~~~l~s~~~d-----g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 141 (430)
.|||||.+|...-.| |.|-|||...+-.. .--...++-.-..+.| .+||+.+
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqr----------------vgE~~t~GiGpHev~l-------m~DGrtl 176 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQR----------------VGEFSTHGIGPHEVTL-------MADGRTL 176 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccce----------------ecccccCCcCcceeEE-------ecCCcEE
Confidence 589999999865443 77999998743110 0011122333344555 6688877
Q ss_pred EEEeC------------------CCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCC----eEEE
Q 014125 142 ASTTR------------------DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNK----SVRV 198 (430)
Q Consensus 142 ~~~~~------------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~----~i~v 198 (430)
+.+.. .-++.+.|..+|..+.+...... .+.-.|..++..+||+.++++ ..| .--+
T Consensus 177 vvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~-l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppL 255 (366)
T COG3490 177 VVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPAS-LRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPL 255 (366)
T ss_pred EEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchh-hhhcceeeeeeCCCCcEEEEEEeeCCCccCCcc
Confidence 76532 22344555555655554443322 122367788888888777754 221 1111
Q ss_pred EEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCC
Q 014125 199 FDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGN 278 (430)
Q Consensus 199 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~ 278 (430)
.-...++.+++.+.........-...|-+++.+.+.+...+++-..+...+||..++..+..-.- ..+..++- ...
T Consensus 256 vg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l--~daaGva~--~~~ 331 (366)
T COG3490 256 VGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAAL--PDAAGVAA--AKG 331 (366)
T ss_pred eeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccc--ccccccee--ccC
Confidence 11122233222222111111222345778888875565555666666788999999987654331 12233333 333
Q ss_pred EEEEEecCCCeEEEEe
Q 014125 279 YLYTGGRKDPYILCWD 294 (430)
Q Consensus 279 ~l~~~~~~d~~i~i~d 294 (430)
-+++++ .+|.+.++.
T Consensus 332 gf~vss-g~G~~~~~s 346 (366)
T COG3490 332 GFAVSS-GQGRIIFYS 346 (366)
T ss_pred ceEEec-CCceEEecc
Confidence 355555 688888874
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.014 Score=40.91 Aligned_cols=97 Identities=19% Similarity=0.245 Sum_probs=64.0
Q ss_pred EcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeeccc
Q 014125 230 FSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSS 309 (430)
Q Consensus 230 ~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 309 (430)
|..++.+.|++|+.|..|++|+-. +.+..+. ....|++++-...+ .++.+- .+|+|-+|+-... . .+..
T Consensus 10 ~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~-e~~~v~~L~~~~~~-~F~Y~l-~NGTVGvY~~~~R--l----WRiK 78 (111)
T PF14783_consen 10 FDGDGENELLVGSDDFEIRVFKGD--EIVAEIT-ETDKVTSLCSLGGG-RFAYAL-ANGTVGVYDRSQR--L----WRIK 78 (111)
T ss_pred cCCCCcceEEEecCCcEEEEEeCC--cEEEEEe-cccceEEEEEcCCC-EEEEEe-cCCEEEEEeCcce--e----eeec
Confidence 344566899999999999999764 5555655 45678888877664 466666 8999999986432 1 2222
Q ss_pred CCccceEEEEE-cCC--C-CEEEEEccCCcEEE
Q 014125 310 EHTNQRILFDI-EPS--G-RHLGTGGQDGLVHI 338 (430)
Q Consensus 310 ~~~~~v~~~~~-~~~--~-~~l~~~~~dg~i~v 338 (430)
. ...+.++.+ ..+ | .-|++|=.+|.|-+
T Consensus 79 S-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 79 S-KNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred c-CCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 2 223444443 333 3 35888888887743
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.058 Score=47.84 Aligned_cols=220 Identities=12% Similarity=0.149 Sum_probs=92.2
Q ss_pred CceeEEEEC-----------cCCceEEEec-CCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeec
Q 014125 61 NFLKGIKWS-----------PDGSSFLTSS-EDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWF 128 (430)
Q Consensus 61 ~~v~~~~~s-----------p~~~~l~s~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 128 (430)
+.....-|+ .+.++|+..+ ..+.|.|.|+.+......+.... ... ......-....+.+.|
T Consensus 65 DElHH~GWNaCSsc~~~~~~~~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvI--e~~-ev~~k~g~s~PHT~Hc---- 137 (461)
T PF05694_consen 65 DELHHSGWNACSSCHYGDPSKERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVI--EPE-EVFEKTGLSRPHTVHC---- 137 (461)
T ss_dssp --B---EES--GGSTT--TT--S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE---HH-HHHHHH-EEEEEEEEE----
T ss_pred CccccccCcccccccCCCCcccCCcEEeeeeccCcEEEEECCCCCCCCceEeee--CHH-HHHhhcCCCCCceeee----
Confidence 466666665 2456777776 57889999998543221111100 000 0000000011112222
Q ss_pred cccCccCCCCceEEEEeC------CCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-----------
Q 014125 129 PHMSASDPTSCVFASTTR------DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG----------- 191 (430)
Q Consensus 129 ~~~~~~~~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----------- 191 (430)
-|+|..++++-. -|-+.++|-++-+.......... ...--+.+-|.|..+.++++
T Consensus 138 ------lp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~--~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~G 209 (461)
T PF05694_consen 138 ------LPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRG--PQPFGYDFWYQPRHNVMISSEWGAPSMFEKG 209 (461)
T ss_dssp -------SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-T--T------EEEETTTTEEEE-B---HHHHTT-
T ss_pred ------cCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCC--CCCCCCCeEEcCCCCEEEEeccCChhhcccC
Confidence 457878877522 24577888777666666554322 11234567778877777653
Q ss_pred ----------cCCeEEEEEcCCCCCcccccccccCCCCCC-CcceEEEEEc--CCCCceEEEecCCCeEEEEEc-CCce-
Q 014125 192 ----------YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQ-AGIMSAIAFS--PTHTGMLAIGSYSQTSAIYRE-DNME- 256 (430)
Q Consensus 192 ----------~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~--~~~~~~l~~~~~dg~v~~~d~-~~~~- 256 (430)
...++.+||+..... .+.+. -+. ......+.|. |....-++.+.-.++|..|-. ..++
T Consensus 210 f~~~d~~~~~yG~~l~vWD~~~r~~----~Q~id---Lg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W 282 (461)
T PF05694_consen 210 FNPEDLEAGKYGHSLHVWDWSTRKL----LQTID---LGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEW 282 (461)
T ss_dssp --TTTHHHH-S--EEEEEETTTTEE----EEEEE---S-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEE
T ss_pred CChhHhhcccccCeEEEEECCCCcE----eeEEe---cCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCe
Confidence 135899999987311 11111 111 1234556664 423333444445666666543 3332
Q ss_pred ---eeEEeecc-----------------ccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEE
Q 014125 257 ---LLYVLHGQ-----------------EGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVV 302 (430)
Q Consensus 257 ---~~~~~~~~-----------------~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~ 302 (430)
.+..+... ..-|+.|..|.|.++|+.++...|.|+.||+.....+.
T Consensus 283 ~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pk 348 (461)
T PF05694_consen 283 AAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPK 348 (461)
T ss_dssp EEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-E
T ss_pred eeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCc
Confidence 12222111 24578999999999999999999999999998875543
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.009 Score=53.43 Aligned_cols=137 Identities=13% Similarity=0.115 Sum_probs=94.9
Q ss_pred eEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCE-------EEEEecCCCeEEEEeCCCCceEEEEeeccc
Q 014125 237 MLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNY-------LYTGGRKDPYILCWDLRKAVQVVYKLYRSS 309 (430)
Q Consensus 237 ~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~-------l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 309 (430)
+|..+.....++-.|+..|+.+.....+.. |+-+.+.|+.+. -++|- .|..|.-||.|-...........+
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGL-s~n~vfriDpRv~~~~kl~~~q~k 425 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGL-SDNSVFRIDPRVQGKNKLAVVQSK 425 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEee-cCCceEEecccccCcceeeeeecc
Confidence 445566667899999999999999886655 788888887542 23455 688899999985433111111111
Q ss_pred --CCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCc
Q 014125 310 --EHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHR 376 (430)
Q Consensus 310 --~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~ 376 (430)
.......|++-..+| +|++||.+|.|++||--.......+++...+|..+..+.+|++|+..+..-
T Consensus 426 qy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~ty 493 (644)
T KOG2395|consen 426 QYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKTY 493 (644)
T ss_pred ccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecccE
Confidence 123344555555544 899999999999999743334456778888999999999999887766443
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.036 Score=44.36 Aligned_cols=98 Identities=15% Similarity=0.170 Sum_probs=68.3
Q ss_pred CeEEEEEccCCCEEEEEecCCCeEEEEe--CCCCc----eEEEEeecccCC-ccceEEEEEcCCCCEEEEEccCCcEEEE
Q 014125 267 GVTHVQFSRDGNYLYTGGRKDPYILCWD--LRKAV----QVVYKLYRSSEH-TNQRILFDIEPSGRHLGTGGQDGLVHIY 339 (430)
Q Consensus 267 ~i~~~~~~~~~~~l~~~~~~d~~i~i~d--~~~~~----~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~vw 339 (430)
--+.++|+.+.+.++...+.+-.|.-|| ..++. ..+..+...... .-..-.++...+|.+.++.-..++|...
T Consensus 159 IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~ 238 (310)
T KOG4499|consen 159 ISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKV 238 (310)
T ss_pred CCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEE
Confidence 3467899988888888776777887788 33331 122222221111 1112235556678888888888999999
Q ss_pred EcCCCCeecccccccCCeeEEEEcC
Q 014125 340 DLQTGKWISGFQAAADTVNGFSFHP 364 (430)
Q Consensus 340 d~~~~~~~~~~~~~~~~v~~~~~~~ 364 (430)
|..+|+.+.+++-....|++++|--
T Consensus 239 dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 239 DPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred CCCCCcEEEEEEcCCCceEEEEecC
Confidence 9999999999998889999999974
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.13 Score=50.13 Aligned_cols=129 Identities=12% Similarity=0.122 Sum_probs=79.7
Q ss_pred EEEEEcCCceeeEEeec--cc--cCeEEEEEccC-CCEEEEEec---------CCCeEEEEeCCCCceEEEEeecccCCc
Q 014125 247 SAIYREDNMELLYVLHG--QE--GGVTHVQFSRD-GNYLYTGGR---------KDPYILCWDLRKAVQVVYKLYRSSEHT 312 (430)
Q Consensus 247 v~~~d~~~~~~~~~~~~--~~--~~i~~~~~~~~-~~~l~~~~~---------~d~~i~i~d~~~~~~~~~~~~~~~~~~ 312 (430)
++++|-++.+.+...+- .+ ..|.++.|..| +.++++|.. ..|.|.+|.+...... ..... ..-.
T Consensus 752 l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L-~~v~e-~~v~ 829 (1096)
T KOG1897|consen 752 LRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSL-ELVAE-TVVK 829 (1096)
T ss_pred EEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCce-eeeee-eeec
Confidence 55555555444332221 11 24556668777 667777652 2477888877663222 11111 2233
Q ss_pred cceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCceeee
Q 014125 313 NQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPV 380 (430)
Q Consensus 313 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~v 380 (430)
+.+.++.. -+|++||. -+..|++|+..+.+.++.-..+..++..+...-.|..++.|.--+.+.+
T Consensus 830 Gav~aL~~-fngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitl 894 (1096)
T KOG1897|consen 830 GAVYALVE-FNGKLLAG--INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITL 894 (1096)
T ss_pred cceeehhh-hCCeEEEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEE
Confidence 44444432 24676664 4557999999999888777778888888888888888888877666654
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.052 Score=45.00 Aligned_cols=187 Identities=11% Similarity=0.201 Sum_probs=111.9
Q ss_pred CCceeEEEECcCCceEEEecCCC--eEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCC
Q 014125 60 NNFLKGIKWSPDGSSFLTSSEDK--TLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT 137 (430)
Q Consensus 60 ~~~v~~~~~sp~~~~l~s~~~dg--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 137 (430)
......+.|..+|.++-+.|.-| .|+.+|+.+++.......... .... =....+..++.+.|
T Consensus 44 ~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~-----~FgE-Git~~~d~l~qLTW---------- 107 (264)
T PF05096_consen 44 TAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPR-----YFGE-GITILGDKLYQLTW---------- 107 (264)
T ss_dssp T-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT-------EE-EEEEETTEEEEEES----------
T ss_pred cccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcc-----ccce-eEEEECCEEEEEEe----------
Confidence 34456788878888888888766 699999998865433222110 0000 00112345555655
Q ss_pred CceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccccccccC
Q 014125 138 SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKG 216 (430)
Q Consensus 138 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~ 216 (430)
.++...+||..+-+.+..+.... .-+.++ .+++.|+.+ ....|+++|..+-.. ...+.-
T Consensus 108 --------k~~~~f~yd~~tl~~~~~~~y~~------EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~----~~~i~V 167 (264)
T PF05096_consen 108 --------KEGTGFVYDPNTLKKIGTFPYPG------EGWGLT--SDGKRLIMSDGSSRLYFLDPETFKE----VRTIQV 167 (264)
T ss_dssp --------SSSEEEEEETTTTEEEEEEE-SS------S--EEE--ECSSCEEEE-SSSEEEEE-TTT-SE----EEEEE-
T ss_pred --------cCCeEEEEccccceEEEEEecCC------cceEEE--cCCCEEEEECCccceEEECCcccce----EEEEEE
Confidence 67889999999888888776543 556677 456666644 778899999764211 111111
Q ss_pred CCC-CCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeec------------c---ccCeEEEEEccCCCEE
Q 014125 217 NKE-GQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG------------Q---EGGVTHVQFSRDGNYL 280 (430)
Q Consensus 217 ~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~------------~---~~~i~~~~~~~~~~~l 280 (430)
... ..-..++.+.+- ++.++|=.-....|...|..+|+....+.. + ..-.+.||++|....|
T Consensus 168 ~~~g~pv~~LNELE~i--~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l 245 (264)
T PF05096_consen 168 TDNGRPVSNLNELEYI--NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRL 245 (264)
T ss_dssp EETTEE---EEEEEEE--TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEE
T ss_pred EECCEECCCcEeEEEE--cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEE
Confidence 111 112346667776 455666666778888889999987766531 0 2347899999998888
Q ss_pred EEEe
Q 014125 281 YTGG 284 (430)
Q Consensus 281 ~~~~ 284 (430)
+++|
T Consensus 246 ~vTG 249 (264)
T PF05096_consen 246 FVTG 249 (264)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8887
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00055 Score=54.12 Aligned_cols=145 Identities=9% Similarity=0.027 Sum_probs=83.1
Q ss_pred eEEEecCCCeEEEEEcCCceeeEEe-eccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccce
Q 014125 237 MLAIGSYSQTSAIYREDNMELLYVL-HGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQR 315 (430)
Q Consensus 237 ~l~~~~~dg~v~~~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v 315 (430)
.+..-+.+|.|+-++++..+....- .-+... . ..-.-+..+++++ .+|.|++|............ ......+
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~-~--~v~~~~~~~~vG~-~dg~v~~~n~n~~g~~~d~~---~s~~e~i 104 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEG-Q--RVVTASAKLMVGT-SDGAVYVFNWNLEGAHSDRV---CSGEESI 104 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcc-e--eecccCceEEeec-ccceEEEecCCccchHHHhh---hcccccc
Confidence 3444566788887777654322111 112222 1 1122345688888 99999999887332111010 1111222
Q ss_pred -EEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCCCccccccCCCc
Q 014125 316 -ILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFEDLHLSGDENC 394 (430)
Q Consensus 316 -~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~l~~~~~d~~ 394 (430)
..+.--.++.+..++..||.|+.|++..++.+.....|.. -++..+++.+.++.+.+|+. ++|..
T Consensus 105 ~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~--------~~~e~~ivv~sd~~i~~a~~------S~d~~ 170 (238)
T KOG2444|consen 105 DLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNF--------ESGEELIVVGSDEFLKIADT------SHDRV 170 (238)
T ss_pred eeccccccccceeEEeccCCceeeeccccCceeeeeccccC--------CCcceeEEecCCceEEeecc------ccchh
Confidence 2232233456889999999999999998888777776763 23445555555555555543 45777
Q ss_pred EEEEeecc
Q 014125 395 VSVWSFLY 402 (430)
Q Consensus 395 i~~w~~~~ 402 (430)
++.|++..
T Consensus 171 ~k~W~ve~ 178 (238)
T KOG2444|consen 171 LKKWNVEK 178 (238)
T ss_pred hhhcchhh
Confidence 77777654
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.041 Score=50.51 Aligned_cols=120 Identities=14% Similarity=0.104 Sum_probs=73.8
Q ss_pred ceEEEEEcCCCCceEEEecCCC----eEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecC----------CCe
Q 014125 224 IMSAIAFSPTHTGMLAIGSYSQ----TSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRK----------DPY 289 (430)
Q Consensus 224 ~v~~~~~~~~~~~~l~~~~~dg----~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~----------d~~ 289 (430)
.+..+.++|++..++++-+..| .++++|+.+++.+...-.. .....+.|.++++.|+..... ...
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 3557889996554544544444 5999999999776532211 122349999998887766522 224
Q ss_pred EEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEcc---C-CcEEEEEcCCC
Q 014125 290 ILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQ---D-GLVHIYDLQTG 344 (430)
Q Consensus 290 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d-g~i~vwd~~~~ 344 (430)
|+.|.+.+....-..++...........+..++++++|+.... + ..+++.++..+
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 7888888765442333332333333667889999999775433 2 35888888875
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.022 Score=51.89 Aligned_cols=121 Identities=12% Similarity=0.153 Sum_probs=74.0
Q ss_pred ceEEEEECCCC-----cEEEEEcCCeEEEEEcCCCCCcc-ccc-ccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeE
Q 014125 175 AAFSVAFNPTG-----TKIFAGYNKSVRVFDVHRPGRDF-EKY-STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTS 247 (430)
Q Consensus 175 ~v~~~~~~~~~-----~~l~~~~d~~i~v~d~~~~~~~~-~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v 247 (430)
.|..+.|.|-+ .+||+-..+.|.||.+....... +.. ...-...+...--...+.|+| ...+|++-.....-
T Consensus 58 hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VLT~~dvS 136 (671)
T PF15390_consen 58 HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVLTARDVS 136 (671)
T ss_pred eeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC-CCceEEEEecCcee
Confidence 68899999863 56777889999999986422111 000 000000011112234678999 66677766655555
Q ss_pred EEEEcCCc--eeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCC
Q 014125 248 AIYREDNM--ELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRK 297 (430)
Q Consensus 248 ~~~d~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~ 297 (430)
.+++++.. +....++ ..+-|.|.+|.+||+.|+++-+..=.-++||-..
T Consensus 137 V~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 137 VLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred EeeeeeeCCceEEEecc-CCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 55665533 3333443 4578999999999998887763445567887543
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.038 Score=46.59 Aligned_cols=147 Identities=10% Similarity=0.024 Sum_probs=88.1
Q ss_pred ceEEEEEcCCCCceEEEec--CCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEe-CCCCce
Q 014125 224 IMSAIAFSPTHTGMLAIGS--YSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWD-LRKAVQ 300 (430)
Q Consensus 224 ~v~~~~~~~~~~~~l~~~~--~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d-~~~~~~ 300 (430)
.+.+.++++++..+.++.. ....++++.. +....... ....+....|++++...++.. .+...+++. ...+..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~-~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPDGWVWTVDD-GSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCCCCEEEEEc-CCCceEEEEecCCCcc
Confidence 5888999996665555552 3344555543 33322221 234788899999987666655 566666663 233322
Q ss_pred EEEEeecccCCccceEEEEEcCCCCEEEEEc---cCCcEEEEEcC---CC------CeecccccccCCeeEEEEcCCCcE
Q 014125 301 VVYKLYRSSEHTNQRILFDIEPSGRHLGTGG---QDGLVHIYDLQ---TG------KWISGFQAAADTVNGFSFHPFLPM 368 (430)
Q Consensus 301 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~vwd~~---~~------~~~~~~~~~~~~v~~~~~~~~~~~ 368 (430)
....... ......|..+.+||||..++... .++.|.+--+. .+ .++.........+.++.|.+++.+
T Consensus 101 ~~~~v~~-~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L 179 (253)
T PF10647_consen 101 EPVEVDW-PGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTL 179 (253)
T ss_pred eeEEecc-cccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEE
Confidence 2212211 11122899999999998876555 35777777553 23 111222233457899999999998
Q ss_pred EEEeeCC
Q 014125 369 AASSSGH 375 (430)
Q Consensus 369 l~s~~~d 375 (430)
++.+...
T Consensus 180 ~V~~~~~ 186 (253)
T PF10647_consen 180 VVLGRSA 186 (253)
T ss_pred EEEeCCC
Confidence 8777653
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.16 Score=45.79 Aligned_cols=148 Identities=7% Similarity=0.074 Sum_probs=88.5
Q ss_pred CCceEEEEeCCCcEEEEeccCCce-----eeeeecccccccccceEEEEEC---C--CCcEEEEEcCCeEEEEEcCCCCC
Q 014125 137 TSCVFASTTRDHPIHLWDATTGLL-----RCTYRAYDAVDEITAAFSVAFN---P--TGTKIFAGYNKSVRVFDVHRPGR 206 (430)
Q Consensus 137 ~~~~l~~~~~dg~i~vwd~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~---~--~~~~l~~~~d~~i~v~d~~~~~~ 206 (430)
+...+++|+..|.++||+...+.. +.+.+.. .+|..+..- + +...|++=.-..+.+|.+...+.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~------~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g 109 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLK------DPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDG 109 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecC------CcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCC
Confidence 456899999999999999865431 1111111 266666542 2 23455566778888998854322
Q ss_pred c------ccccccccCCCCCCCcceEEEEEcCCC----CceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccC
Q 014125 207 D------FEKYSTLKGNKEGQAGIMSAIAFSPTH----TGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRD 276 (430)
Q Consensus 207 ~------~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~ 276 (430)
. ..........+ ......++.-|.+ ..++.+=+.||.+.+|+-+.......+.. .--...+.|.+.
T Consensus 110 ~~~~g~~~~L~~~yeh~l---~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~ 185 (418)
T PF14727_consen 110 TVEHGNQYQLELIYEHSL---QRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPR 185 (418)
T ss_pred CcccCcEEEEEEEEEEec---ccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeec
Confidence 2 11000111111 1123333333322 46788889999999999876554444443 222345778888
Q ss_pred CCEEEEEecCCCeEEEEeC
Q 014125 277 GNYLYTGGRKDPYILCWDL 295 (430)
Q Consensus 277 ~~~l~~~~~~d~~i~i~d~ 295 (430)
-..+++++ .+..+..|..
T Consensus 186 tDsfvt~s-ss~~l~~Yky 203 (418)
T PF14727_consen 186 TDSFVTAS-SSWTLECYKY 203 (418)
T ss_pred CCEEEEec-CceeEEEecH
Confidence 88888888 7888988875
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.11 Score=43.77 Aligned_cols=157 Identities=17% Similarity=0.157 Sum_probs=88.8
Q ss_pred ceeEEEECcCCceEEEec---CCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCC
Q 014125 62 FLKGIKWSPDGSSFLTSS---EDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS 138 (430)
Q Consensus 62 ~v~~~~~sp~~~~l~s~~---~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 138 (430)
.+.+.++|+||+.+|... ....++++....... ....+..+..-.| ++++
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~--------------------~~~~g~~l~~PS~-------d~~g 77 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVR--------------------PVLTGGSLTRPSW-------DPDG 77 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcce--------------------eeccCCccccccc-------cCCC
Confidence 588999999999877665 334455554432210 0002235556666 6677
Q ss_pred ceEEEEeCCCcEEEEe-ccCCceee-eeecccccccccceEEEEECCCCcEEEE-E---cCCeEEEEEcCCCCCc-cccc
Q 014125 139 CVFASTTRDHPIHLWD-ATTGLLRC-TYRAYDAVDEITAAFSVAFNPTGTKIFA-G---YNKSVRVFDVHRPGRD-FEKY 211 (430)
Q Consensus 139 ~~l~~~~~dg~i~vwd-~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~---~d~~i~v~d~~~~~~~-~~~~ 211 (430)
...+....+...+++. ..++.... ....... . ..|..+.++|||..++. . .++.|.+--+...... ....
T Consensus 78 ~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~-~--~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l 154 (253)
T PF10647_consen 78 WVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGL-R--GRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRL 154 (253)
T ss_pred CEEEEEcCCCceEEEEecCCCcceeEEeccccc-C--CceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCccee
Confidence 7777777677677774 33333221 1221111 0 17899999999998883 2 3688888877654333 1111
Q ss_pred ccccCCCCCCCcceEEEEEcCCCCceEEEecC-CCeEEE
Q 014125 212 STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY-SQTSAI 249 (430)
Q Consensus 212 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~v~~ 249 (430)
.............++.+.|.+ +..+++.+.. ++.+..
T Consensus 155 ~~~~~~~~~~~~~v~~v~W~~-~~~L~V~~~~~~~~~~~ 192 (253)
T PF10647_consen 155 TGPRRVAPPLLSDVTDVAWSD-DSTLVVLGRSAGGPVVR 192 (253)
T ss_pred ccceEecccccCcceeeeecC-CCEEEEEeCCCCCceeE
Confidence 111112223346789999999 4445555444 343433
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.11 Score=49.36 Aligned_cols=220 Identities=15% Similarity=0.188 Sum_probs=110.6
Q ss_pred CCceEEEEeCCC------cEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcC------CeEEEEEcCCC
Q 014125 137 TSCVFASTTRDH------PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYN------KSVRVFDVHRP 204 (430)
Q Consensus 137 ~~~~l~~~~~dg------~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d------~~i~v~d~~~~ 204 (430)
.+.+++.|+.++ .+..+|..++........... ..-.+++...+.-++++|.+ .++..||....
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~----r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSP----RCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTN 359 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcc----cccccEEEECCEEEEEccccCCCcccceEEEecCCCC
Confidence 355677777763 578889888755444333221 12334555444333345566 45777887764
Q ss_pred CCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCe-----EEEEEcCCceee--EEeeccccCeEEEEEccCC
Q 014125 205 GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQT-----SAIYREDNMELL--YVLHGQEGGVTHVQFSRDG 277 (430)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-----v~~~d~~~~~~~--~~~~~~~~~i~~~~~~~~~ 277 (430)
. +.....+.... .......+ ++.+.++|+.||. |..||..+.+-. ..+.........+.+ +|
T Consensus 360 ~--W~~~a~M~~~R----~~~~v~~l---~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~--~g 428 (571)
T KOG4441|consen 360 Q--WTPVAPMNTKR----SDFGVAVL---DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL--GG 428 (571)
T ss_pred c--eeccCCccCcc----ccceeEEE---CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEE--CC
Confidence 3 33222221111 11222222 6778999998864 777887765432 222211112222222 55
Q ss_pred CEEEEEecCCC------eEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCc-----EEEEEcCCCCe
Q 014125 278 NYLYTGGRKDP------YILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGL-----VHIYDLQTGKW 346 (430)
Q Consensus 278 ~~l~~~~~~d~------~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-----i~vwd~~~~~~ 346 (430)
...++|| .++ .+..||..+..-.... .......... ++ .-++.+.+.|+.|+. |..||..+.+.
T Consensus 429 ~iYi~GG-~~~~~~~l~sve~YDP~t~~W~~~~--~M~~~R~~~g-~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W 503 (571)
T KOG4441|consen 429 KLYIIGG-GDGSSNCLNSVECYDPETNTWTLIA--PMNTRRSGFG-VA-VLNGKIYVVGGFDGTSALSSVERYDPETNQW 503 (571)
T ss_pred EEEEEcC-cCCCccccceEEEEcCCCCceeecC--Ccccccccce-EE-EECCEEEEECCccCCCccceEEEEcCCCCce
Confidence 5555555 443 5678888776432111 1111111111 22 224677888887763 77888887655
Q ss_pred ecc--cccccCCeeEEEEcCCCcEEEEeeCCcee
Q 014125 347 ISG--FQAAADTVNGFSFHPFLPMAASSSGHRRF 378 (430)
Q Consensus 347 ~~~--~~~~~~~v~~~~~~~~~~~l~s~~~d~~~ 378 (430)
... +......+....+ ++.+.+.|+.|+.-
T Consensus 504 ~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~ 535 (571)
T KOG4441|consen 504 TMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNN 535 (571)
T ss_pred eEcccCccccccccEEEE--CCEEEEEecccCcc
Confidence 332 2222222222222 45666677665543
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.022 Score=55.53 Aligned_cols=105 Identities=9% Similarity=0.076 Sum_probs=71.8
Q ss_pred CCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcE
Q 014125 71 DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPI 150 (430)
Q Consensus 71 ~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i 150 (430)
.+-+++.|+..|.+...|+..+-.. .......+.+|.+++| +.+|..++.|-.+|.|
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~----------------~~~ne~v~~~Vtsvaf-------n~dg~~l~~G~~~G~V 154 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGP----------------LHQNERVQGPVTSVAF-------NQDGSLLLAGLGDGHV 154 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccch----------------hhcCCccCCcceeeEe-------cCCCceeccccCCCcE
Confidence 3457888888888888877643100 0111223478999999 7899999999999999
Q ss_pred EEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcC
Q 014125 151 HLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVH 202 (430)
Q Consensus 151 ~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~ 202 (430)
.+||+..++..+.+..+... +. .+..+.+..++..++++ ..|. +|.+.
T Consensus 155 ~v~D~~~~k~l~~i~e~~ap-~t-~vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 155 TVWDMHRAKILKVITEHGAP-VT-GVIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred EEEEccCCcceeeeeecCCc-cc-eEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 99999999988888766541 12 44455555566655555 4454 55543
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.18 Score=44.52 Aligned_cols=71 Identities=17% Similarity=0.106 Sum_probs=43.4
Q ss_pred cCeEEEEEccC-------CCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEE
Q 014125 266 GGVTHVQFSRD-------GNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVH 337 (430)
Q Consensus 266 ~~i~~~~~~~~-------~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 337 (430)
..+..+.|.+. |.++++.- ..+.|....+...................+..+++.|||.+.++-+.+|.|+
T Consensus 253 ~ap~G~~~y~g~~fp~~~g~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 253 SAPTGIIFYRGSAFPEYRGDLFVADY-GGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp --EEEEEEE-SSSSGGGTTEEEEEET-TTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cccCceEEECCccCccccCcEEEecC-CCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 45677777543 34454444 6778888888655443322222234455789999999999888888888774
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0031 Score=36.75 Aligned_cols=36 Identities=19% Similarity=0.253 Sum_probs=31.0
Q ss_pred CCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCe
Q 014125 310 EHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKW 346 (430)
Q Consensus 310 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 346 (430)
.....|..++|+|...+||.|+.+|.|.++.+ +++.
T Consensus 9 ~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 9 NLPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 34567899999999999999999999999999 4544
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0023 Score=37.26 Aligned_cols=31 Identities=16% Similarity=0.370 Sum_probs=28.2
Q ss_pred CCceeEEEECcCCceEEEecCCCeEEEEeCC
Q 014125 60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLP 90 (430)
Q Consensus 60 ~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~ 90 (430)
...|.+++|+|..++||.++.+|.|.+|.+.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 3459999999999999999999999999984
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0031 Score=61.05 Aligned_cols=98 Identities=15% Similarity=0.120 Sum_probs=74.3
Q ss_pred CCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccC
Q 014125 276 DGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAAD 355 (430)
Q Consensus 276 ~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 355 (430)
.+..++.++ ..|.+-..|+...-.. .........+|++++|+.+|+.++.|-.+|.|.+||+..+++++.+..|..
T Consensus 98 ~~~~ivi~T-s~ghvl~~d~~~nL~~---~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a 173 (1206)
T KOG2079|consen 98 VVVPIVIGT-SHGHVLLSDMTGNLGP---LHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGA 173 (1206)
T ss_pred eeeeEEEEc-Cchhhhhhhhhcccch---hhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCC
Confidence 455677777 8899999998875222 223345578899999999999999999999999999999999998887776
Q ss_pred CeeEE---EEcCCCcEEEEeeCCce
Q 014125 356 TVNGF---SFHPFLPMAASSSGHRR 377 (430)
Q Consensus 356 ~v~~~---~~~~~~~~l~s~~~d~~ 377 (430)
+.+++ .+..++..+.++..-|.
T Consensus 174 p~t~vi~v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 174 PVTGVIFVGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred ccceEEEEEEeCCCcEEEEccCCCc
Confidence 65554 44455666777665553
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.24 Score=44.75 Aligned_cols=274 Identities=14% Similarity=0.172 Sum_probs=135.4
Q ss_pred CCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcE
Q 014125 71 DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPI 150 (430)
Q Consensus 71 ~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i 150 (430)
+...|++||..|.++||+....... .....+...-+.+|..+..-.... ..+...||+ -.-..+
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~-------------~~~lllE~~l~~PILqv~~G~F~s--~~~~~~LaV-LhP~kl 99 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQ-------------PEDLLLETQLKDPILQVECGKFVS--GSEDLQLAV-LHPRKL 99 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCC-------------CccEEEEEecCCcEEEEEeccccC--CCCcceEEE-ecCCEE
Confidence 3468999999999999998543211 112334444556787777633211 122334444 445567
Q ss_pred EEEeccCC--c-------eeeeeecccccccccceEEEEECC----CC-cEEE-EEcCCeEEEEEcCCCCCccccccccc
Q 014125 151 HLWDATTG--L-------LRCTYRAYDAVDEITAAFSVAFNP----TG-TKIF-AGYNKSVRVFDVHRPGRDFEKYSTLK 215 (430)
Q Consensus 151 ~vwd~~~~--~-------~~~~~~~~~~~~~~~~v~~~~~~~----~~-~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~ 215 (430)
.+|.+... . .+.....|.- ......++.-| .+ .+|. =+.||.+.+|+-+.-. +.
T Consensus 100 ~vY~v~~~~g~~~~g~~~~L~~~yeh~l---~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~--------f~ 168 (418)
T PF14727_consen 100 SVYSVSLVDGTVEHGNQYQLELIYEHSL---QRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFA--------FS 168 (418)
T ss_pred EEEEEEecCCCcccCcEEEEEEEEEEec---ccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEE--------EE
Confidence 77776321 1 1111111111 11333343322 22 3333 3689999999976521 11
Q ss_pred CCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCc--------------------e---eeEEeeccccC---eE
Q 014125 216 GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM--------------------E---LLYVLHGQEGG---VT 269 (430)
Q Consensus 216 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~--------------------~---~~~~~~~~~~~---i~ 269 (430)
..+.. ---...+.|.| ....|++++.+..+.-|....- + +-.++. -... |.
T Consensus 169 ~~lp~-~llPgPl~Y~~-~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~n-lGE~~l~i~ 245 (418)
T PF14727_consen 169 RFLPD-FLLPGPLCYCP-RTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFN-LGEQALDIQ 245 (418)
T ss_pred EEcCC-CCCCcCeEEee-cCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEE-CCceeEEEE
Confidence 00011 11233467777 6668888888888888864210 0 011111 1122 33
Q ss_pred EEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccce--EEE--EEcCCC-CEEEEEccCCcEEEEEcCCC
Q 014125 270 HVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQR--ILF--DIEPSG-RHLGTGGQDGLVHIYDLQTG 344 (430)
Q Consensus 270 ~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v--~~~--~~~~~~-~~l~~~~~dg~i~vwd~~~~ 344 (430)
.+.++.....+++-| ...+.+.+....-...+++ ....... ..+ ...|+. ..++.++.++++.||.=.+-
T Consensus 246 v~~~~~~~~~IvvLg--er~Lf~l~~~G~l~~~krL---d~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L 320 (418)
T PF14727_consen 246 VVRFSSSESDIVVLG--ERSLFCLKDNGSLRFQKRL---DYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTL 320 (418)
T ss_pred EEEcCCCCceEEEEe--cceEEEEcCCCeEEEEEec---CCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeE
Confidence 334443444566655 5667776664322222111 1111111 111 112221 24888899999999864433
Q ss_pred CeecccccccCC--eeEEEEcCCCcEEEEeeCCceeeec
Q 014125 345 KWISGFQAAADT--VNGFSFHPFLPMAASSSGHRRFPVD 381 (430)
Q Consensus 345 ~~~~~~~~~~~~--v~~~~~~~~~~~l~s~~~d~~~~vw 381 (430)
..-..+ ...+ |.-..|..-..+|++-+.+|.+.+-
T Consensus 321 ~WsA~l--~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~ 357 (418)
T PF14727_consen 321 VWSAQL--PHVPVALSVANFNGLKGLIVSLSDEGQLSVS 357 (418)
T ss_pred EEecCC--CCCCEEEEecccCCCCceEEEEcCCCcEEEE
Confidence 322222 2223 2333344445688888888877765
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.046 Score=51.37 Aligned_cols=201 Identities=10% Similarity=0.054 Sum_probs=101.8
Q ss_pred CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEE
Q 014125 148 HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSA 227 (430)
Q Consensus 148 g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~ 227 (430)
-.|+|++. +|+....+.-... .+..+.|+.+..+|+...+|.+++|++-..... ............|..
T Consensus 64 ~~I~If~~-sG~lL~~~~w~~~-----~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie-----~~svg~e~~~~~I~e 132 (829)
T KOG2280|consen 64 PYIRIFNI-SGQLLGRILWKHG-----ELIGMGWSDDEELICVQKDGTVHVYGLLGEFIE-----SNSVGFESQMSDIVE 132 (829)
T ss_pred eeEEEEec-cccchHHHHhcCC-----CeeeecccCCceEEEEeccceEEEeecchhhhc-----ccccccccccCceeE
Confidence 34777776 4444443333222 777999999999999999999999998642111 000001112223444
Q ss_pred EEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeec---cccCeEEEEEccCCC--E-EEEEecCCCeEEEEeCCCCceE
Q 014125 228 IAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG---QEGGVTHVQFSRDGN--Y-LYTGGRKDPYILCWDLRKAVQV 301 (430)
Q Consensus 228 ~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~---~~~~i~~~~~~~~~~--~-l~~~~~~d~~i~i~d~~~~~~~ 301 (430)
+.+.. ++ +++-..+|.+.+-.-.......++.. ...+-.|-...+++. . ++-.....+ ..++-.......
T Consensus 133 c~~f~-~G--Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q 208 (829)
T KOG2280|consen 133 CRFFH-NG--VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQ 208 (829)
T ss_pred EEEec-Cc--eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceeccccc
Confidence 44443 33 33344456655543322222222221 111112222222211 1 111110000 111111111111
Q ss_pred EEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccc-cCCeeEEEEcCCC
Q 014125 302 VYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAA-ADTVNGFSFHPFL 366 (430)
Q Consensus 302 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~ 366 (430)
. .........+..+..||+.++|+--...|.|.+-+.+..+.+..+... ..+...++|..+.
T Consensus 209 ~---~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd 271 (829)
T KOG2280|consen 209 L---HALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND 271 (829)
T ss_pred c---cccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCC
Confidence 1 111222456778999999999999999999999999887777766522 1233467776443
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.2 Score=43.12 Aligned_cols=183 Identities=13% Similarity=0.135 Sum_probs=89.4
Q ss_pred EEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCce
Q 014125 177 FSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME 256 (430)
Q Consensus 177 ~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~ 256 (430)
..+....++..++++..|. ||.....+..++... ....+.+..+.-++ ++.+++++.......-||.-...
T Consensus 107 ~~i~~l~~~~~~l~~~~G~--iy~T~DgG~tW~~~~------~~~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~ 177 (302)
T PF14870_consen 107 FGITALGDGSAELAGDRGA--IYRTTDGGKTWQAVV------SETSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTT 177 (302)
T ss_dssp EEEEEEETTEEEEEETT----EEEESSTTSSEEEEE-------S----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS
T ss_pred eEEEEcCCCcEEEEcCCCc--EEEeCCCCCCeeEcc------cCCcceeEeEEECC-CCcEEEEECcccEEEEecCCCcc
Confidence 3444444555555665554 555555555554322 22235688888888 56677777666666677754322
Q ss_pred eeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEE-eecccCCccceEEEEEcCCCCEEEEEccCCc
Q 014125 257 LLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYK-LYRSSEHTNQRILFDIEPSGRHLGTGGQDGL 335 (430)
Q Consensus 257 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 335 (430)
-...-..-...|.+|.|.|++...++ . ..|.|+.=+.......... ........-.+..++|.+++...++|+. |.
T Consensus 178 w~~~~r~~~~riq~~gf~~~~~lw~~-~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~ 254 (302)
T PF14870_consen 178 WQPHNRNSSRRIQSMGFSPDGNLWML-A-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GT 254 (302)
T ss_dssp -EEEE--SSS-EEEEEE-TTS-EEEE-E-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST-T-
T ss_pred ceEEccCccceehhceecCCCCEEEE-e-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCC-cc
Confidence 22222223578999999999876554 4 7899998873222222111 1111223344789999998887776665 43
Q ss_pred EEEEEcCCCCeecccc---cccCCeeEEEEcCCCcEEEEe
Q 014125 336 VHIYDLQTGKWISGFQ---AAADTVNGFSFHPFLPMAASS 372 (430)
Q Consensus 336 i~vwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~s~ 372 (430)
+ +...+.|+.-...+ .-...+..|.|.+..+-++.|
T Consensus 255 l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG 293 (302)
T PF14870_consen 255 L-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG 293 (302)
T ss_dssp E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-
T ss_pred E-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEEC
Confidence 3 34455555433222 233467888888665555544
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.041 Score=52.33 Aligned_cols=198 Identities=8% Similarity=0.005 Sum_probs=97.7
Q ss_pred CCceEEEEeCC------CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcC-----CeEEEEEcCCC
Q 014125 137 TSCVFASTTRD------HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYN-----KSVRVFDVHRP 204 (430)
Q Consensus 137 ~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d-----~~i~v~d~~~~ 204 (430)
++.+++.|+.+ ..+..||+.++.....-..... .... +++. -++++.+ +|.+ ..+..||..+.
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~---R~~~-~~~~-~~g~IYviGG~~~~~~~~sve~Ydp~~~ 377 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKN---RCRF-SLAV-IDDTIYAIGGQNGTNVERTIECYTMGDD 377 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcch---hhce-eEEE-ECCEEEEECCcCCCCCCceEEEEECCCC
Confidence 45667777753 3477888877654322111110 0011 2222 2455555 4443 34788887653
Q ss_pred CCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCC-----------------------CeEEEEEcCCceee--E
Q 014125 205 GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS-----------------------QTSAIYREDNMELL--Y 259 (430)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----------------------g~v~~~d~~~~~~~--~ 259 (430)
.+.....+...... ...+.+ ++.+++.|+.+ ..+..||..+.+-. .
T Consensus 378 --~W~~~~~mp~~r~~----~~~~~~---~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~ 448 (557)
T PHA02713 378 --KWKMLPDMPIALSS----YGMCVL---DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLP 448 (557)
T ss_pred --eEEECCCCCccccc----ccEEEE---CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecC
Confidence 22222222211111 122222 56677877754 24777887765432 2
Q ss_pred EeeccccCeEEEEEccCCCEEEEEecCC------CeEEEEeCCC-CceEEEEeecccCCccceEEEEEcCCCCEEEEEcc
Q 014125 260 VLHGQEGGVTHVQFSRDGNYLYTGGRKD------PYILCWDLRK-AVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQ 332 (430)
Q Consensus 260 ~~~~~~~~i~~~~~~~~~~~l~~~~~~d------~~i~i~d~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 332 (430)
.+....... +++ .-+++..+.|| .+ ..+..||..+ ..-. ..............+.+ +|++.++|+.
T Consensus 449 ~m~~~r~~~-~~~-~~~~~IYv~GG-~~~~~~~~~~ve~Ydp~~~~~W~--~~~~m~~~r~~~~~~~~--~~~iyv~Gg~ 521 (557)
T PHA02713 449 NFWTGTIRP-GVV-SHKDDIYVVCD-IKDEKNVKTCIFRYNTNTYNGWE--LITTTESRLSALHTILH--DNTIMMLHCY 521 (557)
T ss_pred CCCcccccC-cEE-EECCEEEEEeC-CCCCCccceeEEEecCCCCCCee--EccccCcccccceeEEE--CCEEEEEeee
Confidence 221111111 122 22455555555 43 2467888886 3221 11111222222222332 5788889998
Q ss_pred CC--cEEEEEcCCCCeecccccccC
Q 014125 333 DG--LVHIYDLQTGKWISGFQAAAD 355 (430)
Q Consensus 333 dg--~i~vwd~~~~~~~~~~~~~~~ 355 (430)
+| .+..||..+.+.......|..
T Consensus 522 ~~~~~~e~yd~~~~~W~~~~~~~~~ 546 (557)
T PHA02713 522 ESYMLQDTFNVYTYEWNHICHQHSN 546 (557)
T ss_pred cceeehhhcCcccccccchhhhcCC
Confidence 88 788888888777655555543
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.25 Score=42.76 Aligned_cols=222 Identities=12% Similarity=0.089 Sum_probs=116.0
Q ss_pred EEECcCCce-EEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEE
Q 014125 66 IKWSPDGSS-FLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFAST 144 (430)
Q Consensus 66 ~~~sp~~~~-l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 144 (430)
..|.++... +.+--..+.|.-|+..+++. ..+.....+.++.. +.. +..|++
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-------------------~~~~~p~~~~~~~~------~d~-~g~Lv~- 82 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKK-------------------RVFPSPGGFSSGAL------IDA-GGRLIA- 82 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCce-------------------EEEECCCCccccee------ecC-CCeEEE-
Confidence 456776664 44445567788887764422 11111122222222 122 223333
Q ss_pred eCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcC----------CeEEEEEcCCCCCcccccccc
Q 014125 145 TRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYN----------KSVRVFDVHRPGRDFEKYSTL 214 (430)
Q Consensus 145 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d----------~~i~v~d~~~~~~~~~~~~~~ 214 (430)
+..| +.+++.+++..+..+............+.....|+|.+.++... ..-.+|-+...+...+
T Consensus 83 ~~~g-~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~----- 156 (307)
T COG3386 83 CEHG-VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVR----- 156 (307)
T ss_pred Eccc-cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEE-----
Confidence 3344 67777766665333333222122235668888999988885422 0113333332111111
Q ss_pred cCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCC--ce-----eeEEeeccccCeEEEEEccCCCEEEEEecCC
Q 014125 215 KGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN--ME-----LLYVLHGQEGGVTHVQFSRDGNYLYTGGRKD 287 (430)
Q Consensus 215 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~--~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d 287 (430)
....+-..-+.++|+|++..++++=+..+.|.-|++.. +. ....+....+..-.++...+|.+.+++. .+
T Consensus 157 --l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~-~~ 233 (307)
T COG3386 157 --LLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAV-WG 233 (307)
T ss_pred --eecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecc-cC
Confidence 11222344678999997766666666678899988752 11 1222223345667788888888775554 44
Q ss_pred C-eEEEEeCCCCceEEEEeecccCCccceEEEEEc-CCCCEEE
Q 014125 288 P-YILCWDLRKAVQVVYKLYRSSEHTNQRILFDIE-PSGRHLG 328 (430)
Q Consensus 288 ~-~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~ 328 (430)
| .|.+|+.. ++... ... -....+++++|- |+.+.|+
T Consensus 234 g~~v~~~~pd-G~l~~-~i~---lP~~~~t~~~FgG~~~~~L~ 271 (307)
T COG3386 234 GGRVVRFNPD-GKLLG-EIK---LPVKRPTNPAFGGPDLNTLY 271 (307)
T ss_pred CceEEEECCC-CcEEE-EEE---CCCCCCccceEeCCCcCEEE
Confidence 4 89999988 43332 221 222456666664 3334433
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.00092 Score=63.23 Aligned_cols=149 Identities=12% Similarity=0.057 Sum_probs=78.0
Q ss_pred CeEEEEEcCCCCCccc--ccccccCCCCCCCcceEEEEEcCC--CCceEEEecCCCeEEEEEcCCceeeEEeeccccCeE
Q 014125 194 KSVRVFDVHRPGRDFE--KYSTLKGNKEGQAGIMSAIAFSPT--HTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVT 269 (430)
Q Consensus 194 ~~i~v~d~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~ 269 (430)
|.+.||+++.-..... ....+. ......+.-+.|.|- +.-.+..+..+++|++........ ..+.+|...++
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~---~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~ 228 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPI---TPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVT 228 (1283)
T ss_pred hhhheeehHhhccccccceEEeec---CcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcc
Confidence 6788898865222111 111111 122223344444442 345666677788888877654322 23334554444
Q ss_pred EE-----------EEccCCCEEEEEecCCCeEEEEeCCCCce-EEEEeecccCCc-cceEEEEEcCC-------C--CEE
Q 014125 270 HV-----------QFSRDGNYLYTGGRKDPYILCWDLRKAVQ-VVYKLYRSSEHT-NQRILFDIEPS-------G--RHL 327 (430)
Q Consensus 270 ~~-----------~~~~~~~~l~~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~~~-~~v~~~~~~~~-------~--~~l 327 (430)
.+ ..+|||..++..+ .||.++.|.+.-... ....+.....|. .+..|.-++.. + .++
T Consensus 229 d~a~~~~g~~~l~~lSpDGtv~a~a~-~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~ 307 (1283)
T KOG1916|consen 229 DMAFFAEGVLKLASLSPDGTVFAWAI-SDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLR 307 (1283)
T ss_pred cHHHHhhchhhheeeCCCCcEEEEee-cCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEE
Confidence 32 2689999999999 999998887542211 111122223344 22222223322 1 245
Q ss_pred EEEccC-CcEEEEEcCCCCee
Q 014125 328 GTGGQD-GLVHIYDLQTGKWI 347 (430)
Q Consensus 328 ~~~~~d-g~i~vwd~~~~~~~ 347 (430)
++++.- ..+++|....++++
T Consensus 308 Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 308 ITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred EecccCCcceeEeeccchhhh
Confidence 555543 45999988877765
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.23 Score=47.32 Aligned_cols=189 Identities=16% Similarity=0.241 Sum_probs=94.2
Q ss_pred CCceEEEEeCC------CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCC-----eEEEEEcCCC
Q 014125 137 TSCVFASTTRD------HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNK-----SVRVFDVHRP 204 (430)
Q Consensus 137 ~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~-----~i~v~d~~~~ 204 (430)
++.+.++|+.| .++..||..+++....-.. .... .-.+++.. +|.+.+ +|.|| ++-.||..+.
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M-~~~R---~~~~v~~l-~g~iYavGG~dg~~~l~svE~YDp~~~ 406 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPM-NTKR---SDFGVAVL-DGKLYAVGGFDGEKSLNSVECYDPVTN 406 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCceeccCCc-cCcc---ccceeEEE-CCEEEEEeccccccccccEEEecCCCC
Confidence 46688888888 3577888888775442211 1111 11122221 455555 55664 4777777653
Q ss_pred CCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCC------eEEEEEcCCceee--EEeeccccCeEEEEEccC
Q 014125 205 GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ------TSAIYREDNMELL--YVLHGQEGGVTHVQFSRD 276 (430)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg------~v~~~d~~~~~~~--~~~~~~~~~i~~~~~~~~ 276 (430)
. +....... ........+.+ ++.+.++|+.++ ++..||..+.+-. ..+..-..... ++. -+
T Consensus 407 ~--W~~va~m~----~~r~~~gv~~~---~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~-~~ 475 (571)
T KOG4441|consen 407 K--WTPVAPML----TRRSGHGVAVL---GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAV-LN 475 (571)
T ss_pred c--ccccCCCC----cceeeeEEEEE---CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EEE-EC
Confidence 2 11111111 11112222233 677888888554 5678887766432 22221112222 222 24
Q ss_pred CCEEEEEecCCC-----eEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCC-----cEEEEEcCCCCe
Q 014125 277 GNYLYTGGRKDP-----YILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDG-----LVHIYDLQTGKW 346 (430)
Q Consensus 277 ~~~l~~~~~~d~-----~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~ 346 (430)
+...+.|| .|+ +|..||..+..-... .........+..+.+ ++...++|+.|| +|..||..+.+.
T Consensus 476 ~~iYvvGG-~~~~~~~~~VE~ydp~~~~W~~v--~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~W 550 (571)
T KOG4441|consen 476 GKIYVVGG-FDGTSALSSVERYDPETNQWTMV--APMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETDTW 550 (571)
T ss_pred CEEEEECC-ccCCCccceEEEEcCCCCceeEc--ccCccccccccEEEE--CCEEEEEecccCccccceeEEcCCCCCce
Confidence 55555555 665 377788877643221 111222222222222 467778888776 477777665543
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.26 Score=41.19 Aligned_cols=167 Identities=12% Similarity=0.107 Sum_probs=107.4
Q ss_pred CeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEE
Q 014125 120 ESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRV 198 (430)
Q Consensus 120 ~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v 198 (430)
..+.++.| +|+.+.|++......-.|+=..+|+.+..+....-. ..-.+.+..+++++++. .++.+.+
T Consensus 86 ~nvS~LTy-------np~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~----DpE~Ieyig~n~fvi~dER~~~l~~ 154 (316)
T COG3204 86 ANVSSLTY-------NPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFS----DPETIEYIGGNQFVIVDERDRALYL 154 (316)
T ss_pred ccccceee-------CCCcceEEEecCCCceEEEEecCCceEEEecccccC----ChhHeEEecCCEEEEEehhcceEEE
Confidence 34889999 778888888888888888877789998887765421 33467888888888877 7899999
Q ss_pred EEcCCCCCcccccc-ccc-CCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCce-e--eEEeecc-------cc
Q 014125 199 FDVHRPGRDFEKYS-TLK-GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME-L--LYVLHGQ-------EG 266 (430)
Q Consensus 199 ~d~~~~~~~~~~~~-~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~-~--~~~~~~~-------~~ 266 (430)
+.+........... .+. ......+.....++|.| ....|..+-+..-+.||...... . ......+ -.
T Consensus 155 ~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~ 233 (316)
T COG3204 155 FTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVL 233 (316)
T ss_pred EEEcCCccEEeccceEEeccccCCCCcCceeeecCC-CCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEee
Confidence 88876433221111 111 11112255688999999 55566667666667777654322 1 1111111 23
Q ss_pred CeEEEEEccCCCEEEEEecCCCeEEEEeCCCC
Q 014125 267 GVTHVQFSRDGNYLYTGGRKDPYILCWDLRKA 298 (430)
Q Consensus 267 ~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~ 298 (430)
.|.++.|++....|++-+..++.+.-.|....
T Consensus 234 DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 234 DVSGLEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred ccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence 57788898755545444437888887887655
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.66 Score=45.51 Aligned_cols=166 Identities=8% Similarity=0.088 Sum_probs=101.2
Q ss_pred ceEEEEEcCCCCceEEEec----------CCCeEEEEEcCCceeeEEeec--cccCeEEEEEccCCCEEEEEecCCCeEE
Q 014125 224 IMSAIAFSPTHTGMLAIGS----------YSQTSAIYREDNMELLYVLHG--QEGGVTHVQFSRDGNYLYTGGRKDPYIL 291 (430)
Q Consensus 224 ~v~~~~~~~~~~~~l~~~~----------~dg~v~~~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~~d~~i~ 291 (430)
.+.++.|..+.+.++++|+ ..|.|.+|.....+.+..... -.+.+.++.- -+|+++|. -...|+
T Consensus 776 Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~-fngkllA~---In~~vr 851 (1096)
T KOG1897|consen 776 SIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE-FNGKLLAG---INQSVR 851 (1096)
T ss_pred eeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh-hCCeEEEe---cCcEEE
Confidence 4556678886677777775 247788887776433333221 2345555543 25665554 467999
Q ss_pred EEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCC--eeccc-ccccCCeeEEEEcCCCcE
Q 014125 292 CWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGK--WISGF-QAAADTVNGFSFHPFLPM 368 (430)
Q Consensus 292 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~-~~~~~~v~~~~~~~~~~~ 368 (430)
+|++.+.+.. .....+..++..+...-.|..+++|.--+++.+...+..+ ....- ..+....+++.+-.+..+
T Consensus 852 Lye~t~~~eL----r~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~y 927 (1096)
T KOG1897|consen 852 LYEWTTEREL----RIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTY 927 (1096)
T ss_pred EEEcccccee----hhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCceE
Confidence 9999877433 2224677788888888889999999988887776655433 33222 235567777777654444
Q ss_pred EEEeeCCceeeecCCCccccccCCCcEEEE
Q 014125 369 AASSSGHRRFPVDDFEDLHLSGDENCVSVW 398 (430)
Q Consensus 369 l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w 398 (430)
+-+..+|.+.+-..+.-++.-.|..+--|
T Consensus 928 -lgae~~gNlf~v~~d~~~~td~eR~~l~~ 956 (1096)
T KOG1897|consen 928 -LGAENSGNLFTVRKDSDATTDEERQILEE 956 (1096)
T ss_pred -EeecccccEEEEEecCCCCchhhhhcccc
Confidence 44455666665544444444444444333
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.42 Score=43.02 Aligned_cols=148 Identities=14% Similarity=0.134 Sum_probs=74.4
Q ss_pred eeeeeeeccccCccCCCCceEEEEe-----------CCC-cEEEEeccC--Ccee--eeeecccccccccceEEEEECCC
Q 014125 121 SVYDFCWFPHMSASDPTSCVFASTT-----------RDH-PIHLWDATT--GLLR--CTYRAYDAVDEITAAFSVAFNPT 184 (430)
Q Consensus 121 ~v~~~~~~~~~~~~~~~~~~l~~~~-----------~dg-~i~vwd~~~--~~~~--~~~~~~~~~~~~~~v~~~~~~~~ 184 (430)
....++| .++|+++++-. ..+ .|.+++-.+ |+.. ..+.... .....+++.++
T Consensus 15 ~P~~ia~-------d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l-----~~p~Gi~~~~~ 82 (367)
T TIGR02604 15 NPIAVCF-------DERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEEL-----SMVTGLAVAVG 82 (367)
T ss_pred CCceeeE-------CCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCC-----CCccceeEecC
Confidence 3445566 77888777653 223 677776443 3221 2222111 14568999988
Q ss_pred CcEEEEEcCCeEE-EEEcCCCCCcc---c-ccccccCCCCCCCcceEEEEEcCCCCceEEEecC----------------
Q 014125 185 GTKIFAGYNKSVR-VFDVHRPGRDF---E-KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY---------------- 243 (430)
Q Consensus 185 ~~~l~~~~d~~i~-v~d~~~~~~~~---~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---------------- 243 (430)
+ ++++... .|. +.|....+..- + ....+......+......+.|.|++ .++++-+.
T Consensus 83 G-lyV~~~~-~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG-~LYv~~G~~~~~~~~~~~~~~~~~ 159 (367)
T TIGR02604 83 G-VYVATPP-DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDG-WLYFNHGNTLASKVTRPGTSDESR 159 (367)
T ss_pred C-EEEeCCC-eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCC-CEEEecccCCCceeccCCCccCcc
Confidence 8 5554444 444 43554322111 1 1111111001123447789999954 45443331
Q ss_pred ---CCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEe
Q 014125 244 ---SQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGG 284 (430)
Q Consensus 244 ---dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 284 (430)
.|.|.-++..+++......++ .....++|+|+|+.+++-.
T Consensus 160 ~~~~g~i~r~~pdg~~~e~~a~G~-rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 160 QGLGGGLFRYNPDGGKLRVVAHGF-QNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred cccCceEEEEecCCCeEEEEecCc-CCCccceECCCCCEEEEcc
Confidence 145666666554433222222 3457899999998776544
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.32 Score=47.42 Aligned_cols=92 Identities=17% Similarity=0.289 Sum_probs=58.3
Q ss_pred CCCceeEEEECcCCceEEEecCCCeEEEEeCCCC-CCcccc------cccccccccCcccceeeecCCCeeeeeeecccc
Q 014125 59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPEN-GISYDV------NACSLAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (430)
Q Consensus 59 h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (430)
..-.|..|.+||+|++||..|..|. .|-.+... .....+ ..|.. ..-............|..+.|+|.
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt---~~v~~~~~~~~~~~~i~qv~WhP~- 157 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRT---VPVDERFFTSNSSLEIKQVRWHPW- 157 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEE---EEechhhccCCCCceEEEEEEcCC-
Confidence 3446899999999999999998764 44444321 000000 00000 000001112234568999999997
Q ss_pred CccCCCCceEEEEeCCCcEEEEeccCC
Q 014125 132 SASDPTSCVFASTTRDHPIHLWDATTG 158 (430)
Q Consensus 132 ~~~~~~~~~l~~~~~dg~i~vwd~~~~ 158 (430)
+.++..|+.-..|+++++||+...
T Consensus 158 ---s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 158 ---SESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred ---CCCCCeEEEEecCCEEEEEecCCC
Confidence 667889999999999999999754
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.087 Score=48.27 Aligned_cols=127 Identities=11% Similarity=0.136 Sum_probs=72.9
Q ss_pred cCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccC-----CceeeeeecccccccccceEEEEECCCCcEEEEE
Q 014125 117 TEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATT-----GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG 191 (430)
Q Consensus 117 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 191 (430)
+.-+.|..++|.|...+ +...|++......|.||.+.. ++........-......-...+.|+|....|++=
T Consensus 54 GqFEhV~GlsW~P~~~~---~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VL 130 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTA---DTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVL 130 (671)
T ss_pred eccceeeeeeecCcccC---CCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEE
Confidence 33468999999886543 233555666677799999752 2222221111100000112367899999988843
Q ss_pred -cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcC
Q 014125 192 -YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED 253 (430)
Q Consensus 192 -~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~ 253 (430)
....-.+++++..+...+ .. -...+.|.|.+|.+|+.+++++.+..=.-++||-.
T Consensus 131 T~~dvSV~~sV~~d~srVk------aD-i~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 131 TARDVSVLPSVHCDSSRVK------AD-IKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred ecCceeEeeeeeeCCceEE------Ee-ccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 222223455554322111 11 13346799999999777776666666667888854
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.35 Score=41.61 Aligned_cols=232 Identities=12% Similarity=0.112 Sum_probs=102.1
Q ss_pred CCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCC-ceeeeeecccccccccceEEEEECCCCcEEEEEcCCeE
Q 014125 118 EGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTG-LLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSV 196 (430)
Q Consensus 118 ~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i 196 (430)
...++.++.| ..+..-+++|. .+. ++....+ +.-................++.|..+ ..+++|..+.
T Consensus 15 t~~~l~dV~F-------~d~~~G~~VG~-~g~--il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~ivG~~g~- 82 (302)
T PF14870_consen 15 TDKPLLDVAF-------VDPNHGWAVGA-YGT--ILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIVGEPGL- 82 (302)
T ss_dssp -SS-EEEEEE-------SSSS-EEEEET-TTE--EEEESSTTSS-EE-----S-----EEEEEEEETT-EEEEEEETTE-
T ss_pred CCCceEEEEE-------ecCCEEEEEec-CCE--EEEECCCCccccccccCCCccceeeEEEEEecCC-ceEEEcCCce-
Confidence 4468888888 32344455554 453 3333333 22111111111011124567777654 4555666553
Q ss_pred EEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCcee-eEEeeccccCeEEEEEcc
Q 014125 197 RVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL-LYVLHGQEGGVTHVQFSR 275 (430)
Q Consensus 197 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~-~~~~~~~~~~i~~~~~~~ 275 (430)
++....++..+..+... .... +....+.... ....++ .+..|.|+.= .+.++. ......-.+.+..+..++
T Consensus 83 -ll~T~DgG~tW~~v~l~-~~lp---gs~~~i~~l~-~~~~~l-~~~~G~iy~T-~DgG~tW~~~~~~~~gs~~~~~r~~ 154 (302)
T PF14870_consen 83 -LLHTTDGGKTWERVPLS-SKLP---GSPFGITALG-DGSAEL-AGDRGAIYRT-TDGGKTWQAVVSETSGSINDITRSS 154 (302)
T ss_dssp -EEEESSTTSS-EE-----TT-S---S-EEEEEEEE-TTEEEE-EETT--EEEE-SSTTSSEEEEE-S----EEEEEE-T
T ss_pred -EEEecCCCCCcEEeecC-CCCC---CCeeEEEEcC-CCcEEE-EcCCCcEEEe-CCCCCCeeEcccCCcceeEeEEECC
Confidence 34444455555443211 1111 1223333322 222333 3344554332 222222 222233456788899999
Q ss_pred CCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEc-CCCCe----eccc
Q 014125 276 DGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDL-QTGKW----ISGF 350 (430)
Q Consensus 276 ~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~-~~~~~----~~~~ 350 (430)
+|++++++. ....+.-||--...-. ... ......|..+.|+|++.+.+.+ ..|.|++=+. ...+. +..+
T Consensus 155 dG~~vavs~-~G~~~~s~~~G~~~w~--~~~--r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~ 228 (302)
T PF14870_consen 155 DGRYVAVSS-RGNFYSSWDPGQTTWQ--PHN--RNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPI 228 (302)
T ss_dssp TS-EEEEET-TSSEEEEE-TT-SS-E--EEE----SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TT
T ss_pred CCcEEEEEC-cccEEEEecCCCccce--EEc--cCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCc
Confidence 999988886 5555567775432111 111 2346789999999998776654 7888888772 22211 1122
Q ss_pred ccccCCeeEEEEcCCCcEEEEeeCC
Q 014125 351 QAAADTVNGFSFHPFLPMAASSSGH 375 (430)
Q Consensus 351 ~~~~~~v~~~~~~~~~~~l~s~~~d 375 (430)
..-.-.+..++|.+++...++++..
T Consensus 229 ~~~~~~~ld~a~~~~~~~wa~gg~G 253 (302)
T PF14870_consen 229 KTNGYGILDLAYRPPNEIWAVGGSG 253 (302)
T ss_dssp SS--S-EEEEEESSSS-EEEEESTT
T ss_pred ccCceeeEEEEecCCCCEEEEeCCc
Confidence 2233358999999998877766543
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.047 Score=48.92 Aligned_cols=142 Identities=16% Similarity=0.186 Sum_probs=95.0
Q ss_pred EEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCC--------cEEEEEcCCeEEEEEcCCCCCcccccc
Q 014125 141 FASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG--------TKIFAGYNKSVRVFDVHRPGRDFEKYS 212 (430)
Q Consensus 141 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--------~~l~~~~d~~i~v~d~~~~~~~~~~~~ 212 (430)
+..|.....++-.|++.|+.+..+..+.. + -+.|.|.. +.|++-.+..|.-.|.+..+......
T Consensus 483 ~~dg~~~~kLykmDIErGkvveeW~~~dd------v-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~- 554 (776)
T COG5167 483 YLDGGERDKLYKMDIERGKVVEEWDLKDD------V-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVV- 554 (776)
T ss_pred EecCCCcccceeeecccceeeeEeecCCc------c-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeee-
Confidence 34555666788889999999999888763 3 56677753 34444467777777777654322111
Q ss_pred cccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEE
Q 014125 213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILC 292 (430)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i 292 (430)
..+. ........+..-. ...++|+++..|.|++||.-..+....+.+....|-.+..+.+|++++++| ...+.+
T Consensus 555 esKd--Y~tKn~Fss~~tT--esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC--k~yllL 628 (776)
T COG5167 555 ESKD--YKTKNKFSSGMTT--ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC--KNYLLL 628 (776)
T ss_pred eehh--ccccccccccccc--cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee--cceEEE
Confidence 1110 1111122333222 345899999999999999766566666777778899999999999999988 667778
Q ss_pred EeCC
Q 014125 293 WDLR 296 (430)
Q Consensus 293 ~d~~ 296 (430)
-|++
T Consensus 629 ~d~~ 632 (776)
T COG5167 629 TDVP 632 (776)
T ss_pred Eecc
Confidence 7765
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.16 Score=45.71 Aligned_cols=146 Identities=14% Similarity=0.126 Sum_probs=79.8
Q ss_pred ceEEEEEcCCCCceEEEec-----------CCC-eEEEEEcCC--cee--eEEeeccccCeEEEEEccCCCEEEEEecCC
Q 014125 224 IMSAIAFSPTHTGMLAIGS-----------YSQ-TSAIYREDN--MEL--LYVLHGQEGGVTHVQFSRDGNYLYTGGRKD 287 (430)
Q Consensus 224 ~v~~~~~~~~~~~~l~~~~-----------~dg-~v~~~d~~~--~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d 287 (430)
....|+|.+ .++++++-. ..+ .|.+++-.+ ++. ...+.........+++.++| |+++. ..
T Consensus 15 ~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~-~~ 90 (367)
T TIGR02604 15 NPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVAT-PP 90 (367)
T ss_pred CCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeC-CC
Confidence 367889998 555665532 223 777776543 222 23333233456889999988 55554 44
Q ss_pred CeEEEEeCCCC------ceEEEEeeccc--CCccceEEEEEcCCCCEEEEEccC-------------------CcEEEEE
Q 014125 288 PYILCWDLRKA------VQVVYKLYRSS--EHTNQRILFDIEPSGRHLGTGGQD-------------------GLVHIYD 340 (430)
Q Consensus 288 ~~i~i~d~~~~------~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d-------------------g~i~vwd 340 (430)
...++.|.... ...+..-.... .+......++|.|||.+.++-+.. |.|.-++
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 43344454321 11111111111 023446789999999876654421 3455556
Q ss_pred cCCCCeecccccccCCeeEEEEcCCCcEEEEeeC
Q 014125 341 LQTGKWISGFQAAADTVNGFSFHPFLPMAASSSG 374 (430)
Q Consensus 341 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 374 (430)
..+++. ..+.........++|+|+|.++++-..
T Consensus 171 pdg~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn~ 203 (367)
T TIGR02604 171 PDGGKL-RVVAHGFQNPYGHSVDSWGDVFFCDND 203 (367)
T ss_pred cCCCeE-EEEecCcCCCccceECCCCCEEEEccC
Confidence 554443 222222234678999999998876543
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.008 Score=47.79 Aligned_cols=143 Identities=10% Similarity=0.121 Sum_probs=80.0
Q ss_pred eEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCcccccccccCCC
Q 014125 140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNK 218 (430)
Q Consensus 140 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~ 218 (430)
.+..-+.+|.|+-+++..-+....-..... .... .-.-+.-++ ++.+|.|.+|.....+......
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~-----e~~~--v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~------- 97 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFID-----EGQR--VVTASAKLMVGTSDGAVYVFNWNLEGAHSDRV------- 97 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhh-----ccee--ecccCceEEeecccceEEEecCCccchHHHhh-------
Confidence 345556788888777654332211111000 1111 111233444 4589999999987433222111
Q ss_pred CCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccc-cCeEEEEEccCCCEEEEE--ecCCCeEEEEeC
Q 014125 219 EGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE-GGVTHVQFSRDGNYLYTG--GRKDPYILCWDL 295 (430)
Q Consensus 219 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~--~~~d~~i~i~d~ 295 (430)
......+.++.-.-+.+.+..++..+|.|+.|+..-.+.+.....|. .++.....+..++++..+ + .|..++.|++
T Consensus 98 ~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S-~d~~~k~W~v 176 (238)
T KOG2444|consen 98 CSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTS-HDRVLKKWNV 176 (238)
T ss_pred hcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccc-cchhhhhcch
Confidence 11122344433333355588999999999999998888777666676 455555555555555555 5 6666677766
Q ss_pred CC
Q 014125 296 RK 297 (430)
Q Consensus 296 ~~ 297 (430)
..
T Consensus 177 e~ 178 (238)
T KOG2444|consen 177 EK 178 (238)
T ss_pred hh
Confidence 54
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.18 Score=40.56 Aligned_cols=107 Identities=13% Similarity=0.164 Sum_probs=68.4
Q ss_pred EEEEECCCCcEEE-E-EcCCeEEEEEcCCCCCccc---ccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEE
Q 014125 177 FSVAFNPTGTKIF-A-GYNKSVRVFDVHRPGRDFE---KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYR 251 (430)
Q Consensus 177 ~~~~~~~~~~~l~-~-~~d~~i~v~d~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d 251 (430)
..++|+.+.+.+. . +.+-+|.-||.+.+..... .+..+++......-..-.++... .++++++.-..++|..+|
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~~ng~~V~~~d 239 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLYVATFNGGTVQKVD 239 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCcEEEEEecCcEEEEEC
Confidence 4789998887776 3 4677787788543322111 11112221111111223344454 677888888899999999
Q ss_pred cCCceeeEEeeccccCeEEEEEc-cCCCEEEEEe
Q 014125 252 EDNMELLYVLHGQEGGVTHVQFS-RDGNYLYTGG 284 (430)
Q Consensus 252 ~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~ 284 (430)
..+++.+..+.-....|++++|- |+-..+++++
T Consensus 240 p~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~ 273 (310)
T KOG4499|consen 240 PTTGKILLEIKLPTPQITSCCFGGKNLDILYVTT 273 (310)
T ss_pred CCCCcEEEEEEcCCCceEEEEecCCCccEEEEEe
Confidence 99999999998888899999994 3334555554
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0046 Score=58.80 Aligned_cols=169 Identities=12% Similarity=0.060 Sum_probs=91.4
Q ss_pred CeEEEEEcCCcee-eEEeeccccCeEEEEEcc-CCCEEEEEecCCCeEEEEeCCCCc---eEEEEeecccCCccceEEEE
Q 014125 245 QTSAIYREDNMEL-LYVLHGQEGGVTHVQFSR-DGNYLYTGGRKDPYILCWDLRKAV---QVVYKLYRSSEHTNQRILFD 319 (430)
Q Consensus 245 g~v~~~d~~~~~~-~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~d~~i~i~d~~~~~---~~~~~~~~~~~~~~~v~~~~ 319 (430)
+.+++-+..+... ...+++..+.+-.+.|.. +-..+. - .-|.+.+||+.--. .....+.......+.+.-+.
T Consensus 111 ~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~-~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~ 187 (1283)
T KOG1916|consen 111 NGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--R-LVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVS 187 (1283)
T ss_pred hhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--H-HhhhhheeehHhhccccccceEEeecCcCCCCcceee
Confidence 4455554433221 122345566777777742 111222 1 45678888875311 11111111122333444455
Q ss_pred EcC---CCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEE-----------cCCCcEEEEeeCCceeeecCCCc
Q 014125 320 IEP---SGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSF-----------HPFLPMAASSSGHRRFPVDDFED 385 (430)
Q Consensus 320 ~~~---~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~-----------~~~~~~l~s~~~d~~~~vw~~~~ 385 (430)
|.| +.-++..+-.++.|++...++... ..+.+|...+..++| +|||..+++++.||.++.|
T Consensus 188 wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~---- 262 (1283)
T KOG1916|consen 188 WCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFY---- 262 (1283)
T ss_pred ecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCcccee----
Confidence 554 567888888899999887765443 556668777666654 5566666666554444443
Q ss_pred cccccCCCcEEEEeecccccccccCCCCcceeeeeccCccCCCC
Q 014125 386 LHLSGDENCVSVWSFLYASMMENADGINGCEFNCQSEHENLNQD 429 (430)
Q Consensus 386 l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (430)
.|+|.+.....++.....|++.+-.|..|+...|++
T Consensus 263 --------Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~ 298 (1283)
T KOG1916|consen 263 --------QIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILV 298 (1283)
T ss_pred --------eeeeeccccHhhhhccCCCCCCCceeeeeccccccC
Confidence 233333333445555566766677777777777765
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.43 Score=45.54 Aligned_cols=134 Identities=11% Similarity=0.051 Sum_probs=65.4
Q ss_pred CCceEEEecCCC-----eEEEEEcCCceeeE--EeeccccCeEEEEEccCCCEEEEEecCC-------------------
Q 014125 234 HTGMLAIGSYSQ-----TSAIYREDNMELLY--VLHGQEGGVTHVQFSRDGNYLYTGGRKD------------------- 287 (430)
Q Consensus 234 ~~~~l~~~~~dg-----~v~~~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~~d------------------- 287 (430)
++.+++.|+.++ ++..||..+.+-.. .+.........+.. +|+..+.|| .+
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g~IYviGG-~~~~~~~~~~~~~~~~~~~~~ 427 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQYIYIIGG-RTEHIDYTSVHHMNSIDMEED 427 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CCEEEEEeC-CCccccccccccccccccccc
Confidence 566888888754 48889987654321 22211111222222 565555565 44
Q ss_pred ----CeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccC------CcEEEEEcCC-CCe--eccccccc
Q 014125 288 ----PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQD------GLVHIYDLQT-GKW--ISGFQAAA 354 (430)
Q Consensus 288 ----~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~vwd~~~-~~~--~~~~~~~~ 354 (430)
..+..||..+..-. ............ +++ .-+|+..+.|+.+ ..+..||..+ .+. +..+....
T Consensus 428 ~~~~~~ve~YDP~td~W~--~v~~m~~~r~~~-~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r 503 (557)
T PHA02713 428 THSSNKVIRYDTVNNIWE--TLPNFWTGTIRP-GVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRL 503 (557)
T ss_pred ccccceEEEECCCCCeEe--ecCCCCcccccC-cEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccc
Confidence 24777887765321 111111111111 122 2246666777654 2467899886 443 33443322
Q ss_pred CCeeEEEEcCCCcEEEEeeCCc
Q 014125 355 DTVNGFSFHPFLPMAASSSGHR 376 (430)
Q Consensus 355 ~~v~~~~~~~~~~~l~s~~~d~ 376 (430)
.....+.+ ++++.++|+.++
T Consensus 504 ~~~~~~~~--~~~iyv~Gg~~~ 523 (557)
T PHA02713 504 SALHTILH--DNTIMMLHCYES 523 (557)
T ss_pred ccceeEEE--CCEEEEEeeecc
Confidence 22222222 566777776554
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.1 Score=51.58 Aligned_cols=151 Identities=11% Similarity=0.072 Sum_probs=92.6
Q ss_pred ceEEEEECCCCcEEEEE---cCCeEEEEEcCCCCCcc-cccccccC--CCCCCCcceEEEEEcCCCCceEEEecCCCeEE
Q 014125 175 AAFSVAFNPTGTKIFAG---YNKSVRVFDVHRPGRDF-EKYSTLKG--NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSA 248 (430)
Q Consensus 175 ~v~~~~~~~~~~~l~~~---~d~~i~v~d~~~~~~~~-~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~ 248 (430)
++..+...+|+...++. .+-.|..||++.-.... .....+.. ..........++.|+|.-.-..++...|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 45556666777666532 44478899987532111 00111111 11122345678899996666778888899999
Q ss_pred EEEcCCcee-eEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeeccc-CCccceEEEEEcCCCCE
Q 014125 249 IYREDNMEL-LYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSS-EHTNQRILFDIEPSGRH 326 (430)
Q Consensus 249 ~~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~ 326 (430)
+..+..... +..+. .....++++|+|.|+.++.+- ..|++.-|...-... ..+.... .....|.+++|-..-.+
T Consensus 182 V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~-nnGt~vQy~P~leik--~~ip~Pp~~e~yrvl~v~Wl~t~ef 257 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGR-NNGTEVQYEPSLEIK--SEIPEPPVEENYRVLSVTWLSTQEF 257 (1405)
T ss_pred hhhhhhhhhhhcccC-cccceeeEEeccccceeeEec-CCCeEEEeeccccee--ecccCCCcCCCcceeEEEEecceeE
Confidence 887654332 22222 456789999999999999998 899999887643311 1221111 12467889999776666
Q ss_pred EEE
Q 014125 327 LGT 329 (430)
Q Consensus 327 l~~ 329 (430)
+++
T Consensus 258 lvv 260 (1405)
T KOG3630|consen 258 LVV 260 (1405)
T ss_pred EEE
Confidence 553
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.15 Score=48.30 Aligned_cols=104 Identities=13% Similarity=0.127 Sum_probs=67.2
Q ss_pred CceEEEecCCCeEEEEEcCCceeeEEee-ccccCeEEEEEc--cCCCEEEEEecCCCeEEEEeCC-----CCc---eEEE
Q 014125 235 TGMLAIGSYSQTSAIYREDNMELLYVLH-GQEGGVTHVQFS--RDGNYLYTGGRKDPYILCWDLR-----KAV---QVVY 303 (430)
Q Consensus 235 ~~~l~~~~~dg~v~~~d~~~~~~~~~~~-~~~~~i~~~~~~--~~~~~l~~~~~~d~~i~i~d~~-----~~~---~~~~ 303 (430)
+...++-+....+.|||.+.+.....-. ...+.|..+.|. |+++.+++.| ..+.|.+|--. +.. ....
T Consensus 41 ~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVG-f~~~v~l~~Q~R~dy~~~~p~w~~i~ 119 (631)
T PF12234_consen 41 KKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVG-FPHHVLLYTQLRYDYTNKGPSWAPIR 119 (631)
T ss_pred CcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEE-cCcEEEEEEccchhhhcCCcccceeE
Confidence 3344445556679999999886543332 346789999985 6899999999 89999998542 111 1111
Q ss_pred EeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEc
Q 014125 304 KLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDL 341 (430)
Q Consensus 304 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 341 (430)
.+.-......+|.+..|.++|.+++.++ +.+.|+|-
T Consensus 120 ~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 120 KIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred EEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 2111112235788999999987666443 46888874
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.56 Score=39.65 Aligned_cols=208 Identities=13% Similarity=0.117 Sum_probs=111.6
Q ss_pred ceEEEEECCCCcEEEEE-cCCeEEEEEcCCC---CCcccccccccC-CCCCCCcceEEEEEcCC-----------CCceE
Q 014125 175 AAFSVAFNPTGTKIFAG-YNKSVRVFDVHRP---GRDFEKYSTLKG-NKEGQAGIMSAIAFSPT-----------HTGML 238 (430)
Q Consensus 175 ~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~---~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~-----------~~~~l 238 (430)
..+.++++|.+.+-++. ..+...+||.... +........+.. .-.......+.+.|+.. +...+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 56789999999777765 6788999998721 111111111110 11112345677777742 11236
Q ss_pred EEecCCCeEEEEEcCCcee-----eEEeec-cccCe-EEEEEc--cCCCEEEEEecCCCeEEEEeCCCCceEEE-Eeecc
Q 014125 239 AIGSYSQTSAIYREDNMEL-----LYVLHG-QEGGV-THVQFS--RDGNYLYTGGRKDPYILCWDLRKAVQVVY-KLYRS 308 (430)
Q Consensus 239 ~~~~~dg~v~~~d~~~~~~-----~~~~~~-~~~~i-~~~~~~--~~~~~l~~~~~~d~~i~i~d~~~~~~~~~-~~~~~ 308 (430)
+.+++||+|.-|...-... ...+.. ..+.| ..+++. ..+.+|+++....++|.+||-.-...... .....
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP 183 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP 183 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence 7889999999998532211 122221 12333 345554 34678888887899999998653311100 00000
Q ss_pred -------------cCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccc--cccCCeeEEEEcC------CCc
Q 014125 309 -------------SEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQ--AAADTVNGFSFHP------FLP 367 (430)
Q Consensus 309 -------------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~------~~~ 367 (430)
.+..-.|+...-.++++.=+.|-.-|.|-+||+. |.+++.+. +.-...+.|+..| .+.
T Consensus 184 ~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~ 262 (336)
T TIGR03118 184 ALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSGA 262 (336)
T ss_pred CCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCCC
Confidence 0001112222222333333344445789999977 77777663 2333567777765 455
Q ss_pred EEEEeeCCceeeecCC
Q 014125 368 MAASSSGHRRFPVDDF 383 (430)
Q Consensus 368 ~l~s~~~d~~~~vw~~ 383 (430)
+|+---.||+|.++|.
T Consensus 263 lLVGNFGDG~InaFD~ 278 (336)
T TIGR03118 263 LLVGNFGDGTINAYDP 278 (336)
T ss_pred eEEeecCCceeEEecC
Confidence 6666555555555543
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.77 Score=41.09 Aligned_cols=231 Identities=13% Similarity=0.096 Sum_probs=99.8
Q ss_pred CCceEEEEe-CCCcEEEEeccCC----ceeeeeecccccc--cccceEEEEECCCCcEEEEE---cC----CeEEEEEcC
Q 014125 137 TSCVFASTT-RDHPIHLWDATTG----LLRCTYRAYDAVD--EITAAFSVAFNPTGTKIFAG---YN----KSVRVFDVH 202 (430)
Q Consensus 137 ~~~~l~~~~-~dg~i~vwd~~~~----~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~---~d----~~i~v~d~~ 202 (430)
+.++|+..+ ..+.|.|.|+.+. +..+.+....-.. .......+..-|+|.+++++ .+ |.+.++|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 455666665 6788999998843 3333333211110 11123344555788777742 22 456676655
Q ss_pred CCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEec--------------------CCCeEEEEEcCCceeeEEee
Q 014125 203 RPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS--------------------YSQTSAIYREDNMELLYVLH 262 (430)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--------------------~dg~v~~~d~~~~~~~~~~~ 262 (430)
+- ......... .+....-..+-|.| ..+.++++. ...++.+||+.+.+.++++.
T Consensus 166 tf----~v~g~We~~-~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~id 239 (461)
T PF05694_consen 166 TF----EVKGRWEKD-RGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTID 239 (461)
T ss_dssp T------EEEE--SB--TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEE
T ss_pred cc----cccceeccC-CCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEe
Confidence 31 111111110 11223345667777 556666653 34689999999999998887
Q ss_pred ccc--cCeEEEEEc--cCCCEEEEEecCCCeEEEEeC-CCCceEEEEeecccC-----------------CccceEEEEE
Q 014125 263 GQE--GGVTHVQFS--RDGNYLYTGGRKDPYILCWDL-RKAVQVVYKLYRSSE-----------------HTNQRILFDI 320 (430)
Q Consensus 263 ~~~--~~i~~~~~~--~~~~~l~~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~-----------------~~~~v~~~~~ 320 (430)
--. ....-|.|. |+..+=++++--..+|..|-- ..+.-...+...... -..-++.+.+
T Consensus 240 Lg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~i 319 (461)
T PF05694_consen 240 LGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILI 319 (461)
T ss_dssp S-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE
T ss_pred cCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEE
Confidence 433 235567774 455554444424455554433 333222211111110 1345789999
Q ss_pred cCCCCEEEEEcc-CCcEEEEEcCCCC---eecccc----------------cccCCeeEEEEcCCCcEEEEee
Q 014125 321 EPSGRHLGTGGQ-DGLVHIYDLQTGK---WISGFQ----------------AAADTVNGFSFHPFLPMAASSS 373 (430)
Q Consensus 321 ~~~~~~l~~~~~-dg~i~vwd~~~~~---~~~~~~----------------~~~~~v~~~~~~~~~~~l~s~~ 373 (430)
|.|.++|..... .|.|+.||+.... ++.++. .-.+...-+..|-||+.|...+
T Consensus 320 SlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 320 SLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp -TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred ccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 999999876664 7999999998632 222111 0112346677888888666543
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.64 Score=38.77 Aligned_cols=183 Identities=15% Similarity=0.136 Sum_probs=105.8
Q ss_pred eEEEEECCCCcEEE-EEc--CCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEc
Q 014125 176 AFSVAFNPTGTKIF-AGY--NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRE 252 (430)
Q Consensus 176 v~~~~~~~~~~~l~-~~~--d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~ 252 (430)
...+.|..++.++- +|. ...|+.+|+.++... .. ..+... .---.++.. +..++...-.++...+||.
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~-~~-~~l~~~-----~FgEGit~~--~d~l~qLTWk~~~~f~yd~ 117 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVL-QS-VPLPPR-----YFGEGITIL--GDKLYQLTWKEGTGFVYDP 117 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEE-EE-EE-TTT-------EEEEEEE--TTEEEEEESSSSEEEEEET
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEE-EE-EECCcc-----ccceeEEEE--CCEEEEEEecCCeEEEEcc
Confidence 34677766776666 553 347999998874221 11 111111 112233333 3445666667899999999
Q ss_pred CCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeec-ccCCccceEEEEEcCCCCEEEEEc
Q 014125 253 DNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYR-SSEHTNQRILFDIEPSGRHLGTGG 331 (430)
Q Consensus 253 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~ 331 (430)
.+.+.+..+. ..+.=..++ .+++.|+.+. ....|+++|..+.......... ....-..++-+.+- +|...|-.=
T Consensus 118 ~tl~~~~~~~-y~~EGWGLt--~dg~~Li~SD-GS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW 192 (264)
T PF05096_consen 118 NTLKKIGTFP-YPGEGWGLT--SDGKRLIMSD-GSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVW 192 (264)
T ss_dssp TTTEEEEEEE--SSS--EEE--ECSSCEEEE--SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEET
T ss_pred ccceEEEEEe-cCCcceEEE--cCCCEEEEEC-CccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeC
Confidence 9998888876 345556777 4677788777 6788999998776433221111 11223345667775 566666555
Q ss_pred cCCcEEEEEcCCCCeeccccc---------------ccCCeeEEEEcCCCc-EEEEe
Q 014125 332 QDGLVHIYDLQTGKWISGFQA---------------AADTVNGFSFHPFLP-MAASS 372 (430)
Q Consensus 332 ~dg~i~vwd~~~~~~~~~~~~---------------~~~~v~~~~~~~~~~-~l~s~ 372 (430)
....|...|..+|+.+..+.. ..+-.++|+|.|... +++||
T Consensus 193 ~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 193 QTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp TSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred CCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 667788899999987654320 124579999998766 44554
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=96.14 E-value=1.6 Score=43.20 Aligned_cols=213 Identities=13% Similarity=0.090 Sum_probs=112.4
Q ss_pred CceEEEEeCCCcEEEEeccCCceeeeeeccccccc---ccceEEEEECC-----------------CCcEEEEEcCCeEE
Q 014125 138 SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDE---ITAAFSVAFNP-----------------TGTKIFAGYNKSVR 197 (430)
Q Consensus 138 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~-----------------~~~~l~~~~d~~i~ 197 (430)
+..++.++.++.|.-.|..+|+.+..+........ ......+++.. +++.++.+.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 45777888889999999999998888765432111 00111222211 12344456888888
Q ss_pred EEEcCCCCCcccccc--c--ccCCCCCCCcceEEEEEcCC-CCceEEEecC----------CCeEEEEEcCCceeeEEee
Q 014125 198 VFDVHRPGRDFEKYS--T--LKGNKEGQAGIMSAIAFSPT-HTGMLAIGSY----------SQTSAIYREDNMELLYVLH 262 (430)
Q Consensus 198 v~d~~~~~~~~~~~~--~--~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~----------dg~v~~~d~~~~~~~~~~~ 262 (430)
-.|.+++......-. . +.............+.-.|- .+..+++|+. +|.|+-+|.++++.+..+.
T Consensus 274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWD 353 (764)
T ss_pred EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEe
Confidence 888877644322100 0 00000000000000011110 1225555532 6889999999999887764
Q ss_pred cc---------cc--------Ce-EEEEEccCCCEEEEEec-----------------CCCeEEEEeCCCCceEEEEeec
Q 014125 263 GQ---------EG--------GV-THVQFSRDGNYLYTGGR-----------------KDPYILCWDLRKAVQVVYKLYR 307 (430)
Q Consensus 263 ~~---------~~--------~i-~~~~~~~~~~~l~~~~~-----------------~d~~i~i~d~~~~~~~~~~~~~ 307 (430)
.- .+ .+ ..+++++....++.... ..+.|.-.|.++++........
T Consensus 354 ~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~ 433 (764)
T TIGR03074 354 PGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTV 433 (764)
T ss_pred cCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEeccc
Confidence 21 00 11 23455555444444220 1245666777777655433221
Q ss_pred ccC-----CccceEEEEEcC-CCC---EEEEEccCCcEEEEEcCCCCeeccc
Q 014125 308 SSE-----HTNQRILFDIEP-SGR---HLGTGGQDGLVHIYDLQTGKWISGF 350 (430)
Q Consensus 308 ~~~-----~~~~v~~~~~~~-~~~---~l~~~~~dg~i~vwd~~~~~~~~~~ 350 (430)
.+. ......-+.+.. +|+ .++.++.+|.+++.|.++|+++...
T Consensus 434 ~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 434 HHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred CCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 110 011122223322 553 7899999999999999999987654
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.76 Score=43.91 Aligned_cols=189 Identities=13% Similarity=0.119 Sum_probs=87.4
Q ss_pred CCceEEEEeCCC------cEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcC-----CeEEEEEcCCC
Q 014125 137 TSCVFASTTRDH------PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYN-----KSVRVFDVHRP 204 (430)
Q Consensus 137 ~~~~l~~~~~dg------~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d-----~~i~v~d~~~~ 204 (430)
++.+++.|+.++ .+..||..+.+....-..... ......+.. ++.+++ +|.+ ..+..||..+.
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~---R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~ 368 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYP---RKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGES 368 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcc---cccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCC
Confidence 455666666542 577888877765332111111 011112222 455555 4433 35677777653
Q ss_pred CCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCC------CeEEEEEcCCceeeEE--eeccccCeEEEEEccC
Q 014125 205 GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS------QTSAIYREDNMELLYV--LHGQEGGVTHVQFSRD 276 (430)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~v~~~d~~~~~~~~~--~~~~~~~i~~~~~~~~ 276 (430)
.+.....+...... . +++.. ++.+++.|+.+ ..+..||..+.+-... +....... +++ ..+
T Consensus 369 --~W~~~~~lp~~r~~----~-~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~~-~~~ 437 (534)
T PHA03098 369 --KWREEPPLIFPRYN----P-CVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CAI-YHD 437 (534)
T ss_pred --ceeeCCCcCcCCcc----c-eEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eEE-EEC
Confidence 22222222111111 1 12221 55677777732 4588899876543221 11111111 122 224
Q ss_pred CCEEEEEecCC--------CeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccC-----CcEEEEEcCC
Q 014125 277 GNYLYTGGRKD--------PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQD-----GLVHIYDLQT 343 (430)
Q Consensus 277 ~~~l~~~~~~d--------~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~ 343 (430)
+...+.|| .+ ..+.+||..+..-. ..............+.+ +++.++.|+.+ +.|.+||..+
T Consensus 438 ~~iyv~GG-~~~~~~~~~~~~v~~yd~~~~~W~--~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 438 GKIYVIGG-ISYIDNIKVYNIVESYNPVTNKWT--ELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKT 512 (534)
T ss_pred CEEEEECC-ccCCCCCcccceEEEecCCCCcee--eCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCC
Confidence 55555555 32 23888888765322 11111111111122222 56777777654 4688888886
Q ss_pred CCe
Q 014125 344 GKW 346 (430)
Q Consensus 344 ~~~ 346 (430)
.+.
T Consensus 513 ~~W 515 (534)
T PHA03098 513 NTW 515 (534)
T ss_pred CEE
Confidence 544
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=96.07 E-value=1.7 Score=42.97 Aligned_cols=148 Identities=14% Similarity=0.028 Sum_probs=80.9
Q ss_pred CceEEEecCCCeEEEEEcCCceeeEEeeccccCeE-------------EEEEcc--CCCEEEEEec---------CCCeE
Q 014125 235 TGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVT-------------HVQFSR--DGNYLYTGGR---------KDPYI 290 (430)
Q Consensus 235 ~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~-------------~~~~~~--~~~~l~~~~~---------~d~~i 290 (430)
...++.++.|+.+.-.|.++++....+.. .+.|. .+.-.| .+..+++++. .+|.|
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I 338 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI 338 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Confidence 34788888999999999999998876642 12110 111122 1345666641 26889
Q ss_pred EEEeCCCCceEEEEeecccC-------------Cccce-EEEEEcCCCCEEEEEc------------------cCCcEEE
Q 014125 291 LCWDLRKAVQVVYKLYRSSE-------------HTNQR-ILFDIEPSGRHLGTGG------------------QDGLVHI 338 (430)
Q Consensus 291 ~i~d~~~~~~~~~~~~~~~~-------------~~~~v-~~~~~~~~~~~l~~~~------------------~dg~i~v 338 (430)
+-+|.++++........... ....+ ...+++|....++.+. ..+.|.-
T Consensus 339 ~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvA 418 (764)
T TIGR03074 339 RAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVA 418 (764)
T ss_pred EEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEE
Confidence 99999998765543211000 00011 2345555544443322 1345777
Q ss_pred EEcCCCCeecccccccCCeeEE---------EEcC-CCc---EEEEeeCCceeeecCC
Q 014125 339 YDLQTGKWISGFQAAADTVNGF---------SFHP-FLP---MAASSSGHRRFPVDDF 383 (430)
Q Consensus 339 wd~~~~~~~~~~~~~~~~v~~~---------~~~~-~~~---~l~s~~~d~~~~vw~~ 383 (430)
.|+++|+....++.....+.+. .+.. +|+ .++.++.+|.+.+.|.
T Consensus 419 LD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr 476 (764)
T TIGR03074 419 LDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDR 476 (764)
T ss_pred EeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEEC
Confidence 8888898887776522222221 1111 332 5666666666665554
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.77 Score=38.85 Aligned_cols=230 Identities=15% Similarity=0.148 Sum_probs=125.9
Q ss_pred eeeeeeccccCccCCCCceEEEEeCCCcEEEEeccC------C-ceeeeeecccccccccceEEEEECCCC---------
Q 014125 122 VYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATT------G-LLRCTYRAYDAVDEITAAFSVAFNPTG--------- 185 (430)
Q Consensus 122 v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~------~-~~~~~~~~~~~~~~~~~v~~~~~~~~~--------- 185 (430)
-+.+++ +|.+..-++....+...+||... . ..+-.+............+.+.|+...
T Consensus 25 ~WGia~-------~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~ 97 (336)
T TIGR03118 25 AWGLSY-------RPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGI 97 (336)
T ss_pred cceeEe-------cCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCc
Confidence 456666 66677888888888999999861 1 222233322221122356667776432
Q ss_pred ----cEEEEEcCCeEEEEEcCCCCCcc-cccccccCCCCCCCcceEEEEEc--CCCCceEEEecCCCeEEEEEcCCceee
Q 014125 186 ----TKIFAGYNKSVRVFDVHRPGRDF-EKYSTLKGNKEGQAGIMSAIAFS--PTHTGMLAIGSYSQTSAIYREDNMELL 258 (430)
Q Consensus 186 ----~~l~~~~d~~i~v~d~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~~~~~dg~v~~~d~~~~~~~ 258 (430)
.+|.++.||+|.-|........+ ......... ........+++. ..+..++++--..++|.+||-.-.+..
T Consensus 98 ~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s--~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~ 175 (336)
T TIGR03118 98 TGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDAS--QQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPP 175 (336)
T ss_pred ccceeEEEEeCCceEEeecCcCCcccccccEEEEccC--CCcceeeeeEEeecCCCceEEEeccCCCceEEecCcccccc
Confidence 34668899999999854321100 000111111 111223344444 323445566667899999985432221
Q ss_pred E--Eeecc-----cc-----------CeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEE
Q 014125 259 Y--VLHGQ-----EG-----------GVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDI 320 (430)
Q Consensus 259 ~--~~~~~-----~~-----------~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~ 320 (430)
. .+... -. .|+-..-.++++.=+.+. .-|.|-+||+... .+.++ ...+.-+..+.++.
T Consensus 176 ~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~-G~G~VdvFd~~G~--l~~r~-as~g~LNaPWG~a~ 251 (336)
T TIGR03118 176 LPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGA-GLGYVNVFTLNGQ--LLRRV-ASSGRLNAPWGLAI 251 (336)
T ss_pred CCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCC-CcceEEEEcCCCc--EEEEe-ccCCcccCCceeee
Confidence 0 01100 00 011111122222222222 4578999998764 33233 33555667778888
Q ss_pred cC------CCCEEEEEccCCcEEEEEcCCCCeecccccccC------CeeEEEEcC
Q 014125 321 EP------SGRHLGTGGQDGLVHIYDLQTGKWISGFQAAAD------TVNGFSFHP 364 (430)
Q Consensus 321 ~~------~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~------~v~~~~~~~ 364 (430)
.| .|.+|+---.||+|..||..+++.+..+....+ .++.|.|..
T Consensus 252 APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 252 APESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred ChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 66 466777666799999999999998877765433 467888865
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.2 Score=44.50 Aligned_cols=108 Identities=12% Similarity=0.134 Sum_probs=75.7
Q ss_pred cccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCC
Q 014125 264 QEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQT 343 (430)
Q Consensus 264 ~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 343 (430)
..++|.++.|++|.+.|++-- .++.|.+++....................|..+.|+.+ .-+|..+..| +-+|....
T Consensus 65 d~G~I~SIkFSlDnkilAVQR-~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~p 141 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQR-TSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLP 141 (657)
T ss_pred CCCceeEEEeccCcceEEEEe-cCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEch
Confidence 467999999999999999887 89999999985443322222222344556889999876 4455555555 67776654
Q ss_pred C-CeecccccccCCeeEEEEcCCCcEEEEeeC
Q 014125 344 G-KWISGFQAAADTVNGFSFHPFLPMAASSSG 374 (430)
Q Consensus 344 ~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 374 (430)
. +.++..+.|.-.|.-..|.++.+.+.-++.
T Consensus 142 ekrslRlVks~~~nvnWy~yc~et~v~LL~t~ 173 (657)
T KOG2377|consen 142 EKRSLRLVKSHNLNVNWYMYCPETAVILLSTT 173 (657)
T ss_pred hhhhhhhhhhcccCccEEEEccccceEeeecc
Confidence 3 446666778888999999998885554443
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.03 E-value=1.1 Score=40.81 Aligned_cols=138 Identities=9% Similarity=0.020 Sum_probs=86.3
Q ss_pred CCce-EEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCC-------EEEEEecCCCeEEEEeCCCCceEEEEe
Q 014125 234 HTGM-LAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGN-------YLYTGGRKDPYILCWDLRKAVQVVYKL 305 (430)
Q Consensus 234 ~~~~-l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-------~l~~~~~~d~~i~i~d~~~~~~~~~~~ 305 (430)
+..+ +..|.....++--|+..|+.+.....|..- -+.|.|..+ .-++|- .+..|.-.|.+-........
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGl-S~~svFrIDPR~~gNKi~v~ 554 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGL-SDYSVFRIDPRARGNKIKVV 554 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEee-cccceEEecccccCCceeee
Confidence 4444 445666777888899999999888877554 577877542 223344 45555555665433221111
Q ss_pred -ecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCC
Q 014125 306 -YRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGH 375 (430)
Q Consensus 306 -~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 375 (430)
...-.......+..-. ...|+|+|+..|-|++||--..+....+++....|..+..+.+|.++++.+..
T Consensus 555 esKdY~tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~ 624 (776)
T COG5167 555 ESKDYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN 624 (776)
T ss_pred eehhccccccccccccc-cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc
Confidence 1101111222222222 34589999999999999966555555667777899999999999977766643
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.032 Score=31.43 Aligned_cols=32 Identities=22% Similarity=0.283 Sum_probs=27.3
Q ss_pred cceEEEEEcCCCC--ceEEEecCCCeEEEEEcCC
Q 014125 223 GIMSAIAFSPTHT--GMLAIGSYSQTSAIYREDN 254 (430)
Q Consensus 223 ~~v~~~~~~~~~~--~~l~~~~~dg~v~~~d~~~ 254 (430)
+.++++.|+|... .+|+.+-..|.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 3589999998555 6999999999999999995
|
It contains a characteristic DLL sequence motif. |
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.29 Score=38.50 Aligned_cols=36 Identities=19% Similarity=0.369 Sum_probs=29.1
Q ss_pred eeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccC
Q 014125 121 SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATT 157 (430)
Q Consensus 121 ~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 157 (430)
.+.+++|+|...+ ...+.+|++...+|.|.+|....
T Consensus 87 ~vv~~aWSP~Gl~-~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLG-PNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCC-CCCceEEEEEcCCCeEEEEecCC
Confidence 7899999997654 22467899999999999999774
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.79 E-value=1.3 Score=39.27 Aligned_cols=151 Identities=12% Similarity=0.016 Sum_probs=79.9
Q ss_pred CcceEEEEEcCCCCceEEEecCCCeEEEE-EcCCceeeE-EeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCc
Q 014125 222 AGIMSAIAFSPTHTGMLAIGSYSQTSAIY-REDNMELLY-VLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAV 299 (430)
Q Consensus 222 ~~~v~~~~~~~~~~~~l~~~~~dg~v~~~-d~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~ 299 (430)
...+..+.+.| ++.+++++ ..|.+..- +- .++.-. ....-...++++.+.++++.++++ ..|.+++=....+.
T Consensus 172 ~g~~~~i~~~~-~g~~v~~g-~~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg--~~G~~~~~s~d~G~ 246 (334)
T PRK13684 172 AGVVRNLRRSP-DGKYVAVS-SRGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA--RGGQIRFNDPDDLE 246 (334)
T ss_pred cceEEEEEECC-CCeEEEEe-CCceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEe--cCCEEEEccCCCCC
Confidence 45688899998 45455444 45655432 22 222221 222334678999999999877665 46776542233322
Q ss_pred eEEEEeecc-cCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccc---cccCCeeEEEEcCCCcEEEEeeCC
Q 014125 300 QVVYKLYRS-SEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQ---AAADTVNGFSFHPFLPMAASSSGH 375 (430)
Q Consensus 300 ~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~s~~~d 375 (430)
........ ......+..+.+.|++..+++| .+|.+. ...+.++.-.... .-......+.|..++..+++| ..
T Consensus 247 -sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~ 322 (334)
T PRK13684 247 -SWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLG-QR 322 (334)
T ss_pred -ccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEEC-CC
Confidence 11111110 1122457788899987765554 567554 3445444333322 122357777877666665544 34
Q ss_pred ceeeec
Q 014125 376 RRFPVD 381 (430)
Q Consensus 376 ~~~~vw 381 (430)
|.|..+
T Consensus 323 G~il~~ 328 (334)
T PRK13684 323 GVLLRY 328 (334)
T ss_pred ceEEEe
Confidence 444433
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=95.78 E-value=1.3 Score=39.32 Aligned_cols=210 Identities=11% Similarity=0.145 Sum_probs=110.8
Q ss_pred CCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcE--EE-EE-cC---CeEEEEEcCCCCCc
Q 014125 135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTK--IF-AG-YN---KSVRVFDVHRPGRD 207 (430)
Q Consensus 135 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~-~~-~d---~~i~v~d~~~~~~~ 207 (430)
.|...+++...+++-+.+||+.. +.+..+... ......-...+.+ .++. |+ ++ .+ ..|++|.+......
T Consensus 65 dp~kSlIigTdK~~GL~VYdL~G-k~lq~~~~G-r~NNVDvrygf~l--~g~~vDlavas~R~~g~n~l~~f~id~~~g~ 140 (381)
T PF02333_consen 65 DPAKSLIIGTDKKGGLYVYDLDG-KELQSLPVG-RPNNVDVRYGFPL--NGKTVDLAVASDRSDGRNSLRLFRIDPDTGE 140 (381)
T ss_dssp -GGG-EEEEEETTTEEEEEETTS--EEEEE-SS--EEEEEEEEEEEE--TTEEEEEEEEEE-CCCT-EEEEEEEETTTTE
T ss_pred CcccceEEEEeCCCCEEEEcCCC-cEEEeecCC-Ccceeeeecceec--CCceEEEEEEecCcCCCCeEEEEEecCCCCc
Confidence 56677888888888999999964 444544321 1111112233444 3332 33 44 32 57999988743222
Q ss_pred ccccccccCCCCCCCcceEEEEE--cCC-CCceEEEecCCCeEEEEEcC---Cc----eeeEEeeccccCeEEEEEccCC
Q 014125 208 FEKYSTLKGNKEGQAGIMSAIAF--SPT-HTGMLAIGSYSQTSAIYRED---NM----ELLYVLHGQEGGVTHVQFSRDG 277 (430)
Q Consensus 208 ~~~~~~~~~~~~~~~~~v~~~~~--~~~-~~~~l~~~~~dg~v~~~d~~---~~----~~~~~~~~~~~~i~~~~~~~~~ 277 (430)
+................+..+++ +|. +..++++...+|.+..|.+. .+ +.++.|.. ...+..+......
T Consensus 141 L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~ 219 (381)
T PF02333_consen 141 LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDET 219 (381)
T ss_dssp EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTT
T ss_pred ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEeccc
Confidence 22221111111111233566665 343 33456667788998888764 22 35666663 4578889998888
Q ss_pred CEEEEEecCCCeEEEEeCCCCceEE-EEe--ecccCCccceEEEEEc--CCC-CE-EEEEccCCcEEEEEcCC-CCeecc
Q 014125 278 NYLYTGGRKDPYILCWDLRKAVQVV-YKL--YRSSEHTNQRILFDIE--PSG-RH-LGTGGQDGLVHIYDLQT-GKWISG 349 (430)
Q Consensus 278 ~~l~~~~~~d~~i~i~d~~~~~~~~-~~~--~~~~~~~~~v~~~~~~--~~~-~~-l~~~~~dg~i~vwd~~~-~~~~~~ 349 (430)
..|+.+- .+.-|.-|+.+...... ..+ .........+-.+++- +++ .| |++.-.+++..||+... ...+..
T Consensus 220 g~LYvgE-E~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~~~g~ 298 (381)
T PF02333_consen 220 GRLYVGE-EDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNAYVGS 298 (381)
T ss_dssp TEEEEEE-TTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--EEEE
T ss_pred CCEEEec-CccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCcccce
Confidence 8999998 88888888886332111 111 1112234566666663 333 34 44545577899999874 343444
Q ss_pred c
Q 014125 350 F 350 (430)
Q Consensus 350 ~ 350 (430)
|
T Consensus 299 f 299 (381)
T PF02333_consen 299 F 299 (381)
T ss_dssp E
T ss_pred E
Confidence 4
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.41 Score=45.45 Aligned_cols=117 Identities=15% Similarity=0.106 Sum_probs=73.9
Q ss_pred eeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEE
Q 014125 63 LKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFA 142 (430)
Q Consensus 63 v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 142 (430)
.+-+.-|.-++.-++-+....+.|||...+.+. ....+...+.|.++.|.. .|+++.++
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE----------------~~~~f~~~~~I~dLDWts-----t~d~qsiL 90 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLE----------------YEESFSEDDPIRDLDWTS-----TPDGQSIL 90 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcEEE----------------EeeeecCCCceeeceeee-----cCCCCEEE
Confidence 334444444444444444557999999866421 112234567999999966 78999999
Q ss_pred EEeCCCcEEEEecc-----C----CceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCC
Q 014125 143 STTRDHPIHLWDAT-----T----GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHR 203 (430)
Q Consensus 143 ~~~~dg~i~vwd~~-----~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~ 203 (430)
+.+..+.|.++--. . -..+..+....... .+|.+..|.++|.+++ +.++.+.|+|-.-
T Consensus 91 aVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~--h~Igds~Wl~~G~LvV-~sGNqlfv~dk~~ 157 (631)
T PF12234_consen 91 AVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTP--HPIGDSIWLKDGTLVV-GSGNQLFVFDKWL 157 (631)
T ss_pred EEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCC--CCccceeEecCCeEEE-EeCCEEEEECCCc
Confidence 99999999998532 1 12233333222111 2788999999986655 4467888887543
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=95.76 E-value=1.3 Score=39.16 Aligned_cols=66 Identities=9% Similarity=0.019 Sum_probs=39.7
Q ss_pred cceEEEEEcC-------CCCEEEEEccCCcEEEEEcCCCCeec---c-cccccCCeeEEEEcCCCcEEEEeeCCcee
Q 014125 313 NQRILFDIEP-------SGRHLGTGGQDGLVHIYDLQTGKWIS---G-FQAAADTVNGFSFHPFLPMAASSSGHRRF 378 (430)
Q Consensus 313 ~~v~~~~~~~-------~~~~l~~~~~dg~i~vwd~~~~~~~~---~-~~~~~~~v~~~~~~~~~~~l~s~~~d~~~ 378 (430)
..+..+.|-. .|.++++.-..+.|....++.+..+. . +......+..+++.|||.+.++.+.+|.|
T Consensus 253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~i 329 (331)
T PF07995_consen 253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKI 329 (331)
T ss_dssp --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTE
T ss_pred cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeE
Confidence 4555666653 34566666656778888876543222 1 22344479999999999988888766554
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=95.59 E-value=1.2 Score=43.02 Aligned_cols=154 Identities=8% Similarity=0.097 Sum_probs=91.0
Q ss_pred CcEEEEEcCCeEEEEEcCCCCCccc------ccccccC--------CCCCCCcceEEEEEcCC-CCceEEEecCCCeEEE
Q 014125 185 GTKIFAGYNKSVRVFDVHRPGRDFE------KYSTLKG--------NKEGQAGIMSAIAFSPT-HTGMLAIGSYSQTSAI 249 (430)
Q Consensus 185 ~~~l~~~~d~~i~v~d~~~~~~~~~------~~~~~~~--------~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~v~~ 249 (430)
..+++.+..+.|.||+++....... ....... ........|+.|....- +...|+.+..||.|.+
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~ 128 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVLA 128 (717)
T ss_pred CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEEE
Confidence 5667777788999998865322110 0000000 00001223444444322 4568888999999999
Q ss_pred EEcCC-------c-------------eeeEEeeccccCeEEEEEc--cCCCEEEEEecCCCeEEEEeCCCCceEEEEeec
Q 014125 250 YREDN-------M-------------ELLYVLHGQEGGVTHVQFS--RDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYR 307 (430)
Q Consensus 250 ~d~~~-------~-------------~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~ 307 (430)
|...+ . ++...+. -...+++++++ ...++||+++ ....|.||-.......... ..
T Consensus 129 Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSs-Ns~~VTVFaf~l~~~r~~~-~~ 205 (717)
T PF08728_consen 129 YYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSS-NSQEVTVFAFALVDERFYH-VP 205 (717)
T ss_pred EEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEec-CCceEEEEEEecccccccc-cc
Confidence 96531 0 0112222 23478899998 7777888887 7888888766542111111 11
Q ss_pred ccCCccceEEEEEcCCC-----C-EEEEEccCCcEEEEEc
Q 014125 308 SSEHTNQRILFDIEPSG-----R-HLGTGGQDGLVHIYDL 341 (430)
Q Consensus 308 ~~~~~~~v~~~~~~~~~-----~-~l~~~~~dg~i~vwd~ 341 (430)
...+...|-+++|-++. . .|++++-.|.+.+|++
T Consensus 206 s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 206 SHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 22356678888887643 2 7888999999999887
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.24 Score=49.19 Aligned_cols=144 Identities=10% Similarity=-0.032 Sum_probs=89.2
Q ss_pred ceEEEEEcCCCCceEEE--ecCCCeEEEEEcCCceee-----EEeecc------ccCeEEEEEccCCCEEEEEecCCCeE
Q 014125 224 IMSAIAFSPTHTGMLAI--GSYSQTSAIYREDNMELL-----YVLHGQ------EGGVTHVQFSRDGNYLYTGGRKDPYI 290 (430)
Q Consensus 224 ~v~~~~~~~~~~~~l~~--~~~dg~v~~~d~~~~~~~-----~~~~~~------~~~i~~~~~~~~~~~l~~~~~~d~~i 290 (430)
++..+...+| ....++ .+.+-.|..||+++-... .-+..| ..-..++.|+|.-....+.+..|+.|
T Consensus 102 pi~~~v~~~D-~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 102 PIVIFVCFHD-ATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred cceEEEeccC-CceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 4555666664 333333 333447889998764221 111111 23456788888654333333379999
Q ss_pred EEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccccc----ccCCeeEEEEcCCC
Q 014125 291 LCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQA----AADTVNGFSFHPFL 366 (430)
Q Consensus 291 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~----~~~~v~~~~~~~~~ 366 (430)
++..+......... .......++++|+|.|+.++.|-..|++.-|-.. .+....+.. ....|.+|.|-...
T Consensus 181 ~V~~~~~~~~~v~s----~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~ 255 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTS----FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQ 255 (1405)
T ss_pred hhhhhhhhhhhhcc----cCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecce
Confidence 99877654332222 2455678999999999999999999999888644 333333322 13579999999888
Q ss_pred cEEEEee
Q 014125 367 PMAASSS 373 (430)
Q Consensus 367 ~~l~s~~ 373 (430)
.+|+.-+
T Consensus 256 eflvvy~ 262 (1405)
T KOG3630|consen 256 EFLVVYG 262 (1405)
T ss_pred eEEEEec
Confidence 8777644
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=95.54 E-value=1.8 Score=41.75 Aligned_cols=111 Identities=12% Similarity=0.094 Sum_probs=67.9
Q ss_pred CCceEEEEeCCCcEEEEeccC-------C----ce---eeeeecccccccccceEEEEEC--CCCcEEEEE-cCCeEEEE
Q 014125 137 TSCVFASTTRDHPIHLWDATT-------G----LL---RCTYRAYDAVDEITAAFSVAFN--PTGTKIFAG-YNKSVRVF 199 (430)
Q Consensus 137 ~~~~l~~~~~dg~i~vwd~~~-------~----~~---~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~-~d~~i~v~ 199 (430)
....|+.|..||.|.+|.+++ . +. ....+..-.......+++++++ ...++||+| ....|.||
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 456899999999999997632 0 00 0000111111122378899998 788888877 55677777
Q ss_pred EcCCCCCcccccccccCCCCCCCcceEEEEEcCCC--Cc---eEEEecCCCeEEEEEc
Q 014125 200 DVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTH--TG---MLAIGSYSQTSAIYRE 252 (430)
Q Consensus 200 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~---~l~~~~~dg~v~~~d~ 252 (430)
-............ ...+...|.+++|-++. +. .+++++-.|.+.+|++
T Consensus 193 af~l~~~r~~~~~-----s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 193 AFALVDERFYHVP-----SHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEecccccccccc-----ccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 6654211111000 11245568899998754 22 6778888999999887
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.077 Score=29.94 Aligned_cols=31 Identities=13% Similarity=0.208 Sum_probs=26.0
Q ss_pred CceeEEEECcCC---ceEEEecCCCeEEEEeCCC
Q 014125 61 NFLKGIKWSPDG---SSFLTSSEDKTLRIFSLPE 91 (430)
Q Consensus 61 ~~v~~~~~sp~~---~~l~s~~~dg~v~iw~~~~ 91 (430)
+.|+++.|||+. .+|+.+-.-|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468999999843 5888888889999999984
|
It contains a characteristic DLL sequence motif. |
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.19 Score=44.58 Aligned_cols=166 Identities=8% Similarity=0.080 Sum_probs=95.2
Q ss_pred ceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccCCCCCC-CcceE-EEEEcCCCCceEEEecCCCeEEEE-E
Q 014125 175 AAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQ-AGIMS-AIAFSPTHTGMLAIGSYSQTSAIY-R 251 (430)
Q Consensus 175 ~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~v~-~~~~~~~~~~~l~~~~~dg~v~~~-d 251 (430)
.+..+-..|||+.+..-...++.++++.......+.. .....+. ...|+ .+..-. ++.-+.+++.||-|.-| |
T Consensus 222 ~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl---~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~vsQWFd 297 (733)
T COG4590 222 DVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKL---VDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGLVSQWFD 297 (733)
T ss_pred chHhhEECCCCCEEEEecCCeEEEEeecccccchhhh---hhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCceeeeee
Confidence 6677889999999997666899999987643222111 1100110 01122 111222 66678889999998877 5
Q ss_pred cCCce-----eeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCE
Q 014125 252 EDNME-----LLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRH 326 (430)
Q Consensus 252 ~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 326 (430)
.+.+. .++.++-...++..+.-..+.+-+++-. ..|++.++.....+.... ...-..+.-+++||.+.+
T Consensus 298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~-~~G~L~~f~st~~~~lL~-----~~~~~~~~~~~~Sp~~~~ 371 (733)
T COG4590 298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLY-RNGTLQSFYSTSEKLLLF-----ERAYQAPQLVAMSPNQAY 371 (733)
T ss_pred eecCCCCcceeeeccccCcccceeeccccccceEEEEc-CCCceeeeecccCcceeh-----hhhhcCcceeeeCcccch
Confidence 54332 1222222223343333333445566666 788888776544432211 111224556889999999
Q ss_pred EEEEccCCcEEEEEcCCCCeecccc
Q 014125 327 LGTGGQDGLVHIYDLQTGKWISGFQ 351 (430)
Q Consensus 327 l~~~~~dg~i~vwd~~~~~~~~~~~ 351 (430)
+++- ..|.++++.+++..+--++.
T Consensus 372 Ll~e-~~gki~~~~l~Nr~Peisws 395 (733)
T COG4590 372 LLSE-DQGKIRLAQLENRNPEISWS 395 (733)
T ss_pred heee-cCCceEEEEecCCCCCccHH
Confidence 8865 44679999998776544443
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.21 E-value=2.8 Score=40.13 Aligned_cols=145 Identities=15% Similarity=0.151 Sum_probs=68.2
Q ss_pred CCceEEEEeCC-----CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEc--C----CeEEEEEcCCC
Q 014125 137 TSCVFASTTRD-----HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGY--N----KSVRVFDVHRP 204 (430)
Q Consensus 137 ~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~--d----~~i~v~d~~~~ 204 (430)
++.+++.|+.+ ..+..||..+++....-..... ..-.+++. -++.+++ +|. + +.+..||+.+.
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~----r~~~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~ 416 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFP----RYNPCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTN 416 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcC----CccceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCC
Confidence 46677777765 3477888877654432211111 01112222 2455555 442 1 45788887653
Q ss_pred CCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCC--------CeEEEEEcCCceeeEE--eeccccCeEEEEEc
Q 014125 205 GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS--------QTSAIYREDNMELLYV--LHGQEGGVTHVQFS 274 (430)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------g~v~~~d~~~~~~~~~--~~~~~~~i~~~~~~ 274 (430)
.+...........+ . ++... ++.+++.|+.+ ..+.+||..+.+-... +.........+.+
T Consensus 417 --~W~~~~~~p~~r~~----~-~~~~~--~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~- 486 (534)
T PHA03098 417 --KWSKGSPLPISHYG----G-CAIYH--DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF- 486 (534)
T ss_pred --eeeecCCCCccccC----c-eEEEE--CCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE-
Confidence 22222111111111 1 22222 45577777643 2388899876543221 1111111122222
Q ss_pred cCCCEEEEEecCC-----CeEEEEeCCCC
Q 014125 275 RDGNYLYTGGRKD-----PYILCWDLRKA 298 (430)
Q Consensus 275 ~~~~~l~~~~~~d-----~~i~i~d~~~~ 298 (430)
+++.++.|| .+ +.+.+||..+.
T Consensus 487 -~~~iyv~GG-~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 487 -NNKIYVVGG-DKYEYYINEIEVYDDKTN 513 (534)
T ss_pred -CCEEEEEcC-CcCCcccceeEEEeCCCC
Confidence 555555665 33 46778887765
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=95.15 E-value=3.7 Score=40.48 Aligned_cols=241 Identities=12% Similarity=0.093 Sum_probs=114.8
Q ss_pred ceeEEEECcCCceEEEecC-----CCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCC
Q 014125 62 FLKGIKWSPDGSSFLTSSE-----DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP 136 (430)
Q Consensus 62 ~v~~~~~sp~~~~l~s~~~-----dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 136 (430)
.+..+.+||||++|+.+.. .-.|++-|+.++...... +.. .. ..++| .+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~-----------------i~~-~~-~~~~w-------~~ 181 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPEL-----------------LDN-VE-PSFVW-------AN 181 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcc-----------------ccC-cc-eEEEE-------ee
Confidence 4677899999998886533 235888888766321110 000 11 44788 55
Q ss_pred CCceEEEEeCC------CcEEEEeccCC--ceeeeeecccccccccceE-EEEECCCCcEEEE--E--cCCeEEEEEcCC
Q 014125 137 TSCVFASTTRD------HPIHLWDATTG--LLRCTYRAYDAVDEITAAF-SVAFNPTGTKIFA--G--YNKSVRVFDVHR 203 (430)
Q Consensus 137 ~~~~l~~~~~d------g~i~vwd~~~~--~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~--~--~d~~i~v~d~~~ 203 (430)
|++.|+....+ ..|..+++.++ +....+..... ... .+..+.++++++. . .++.+.+++...
T Consensus 182 D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~-----~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~ 256 (686)
T PRK10115 182 DSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDD-----TFYVSLHKTTSKHYVVIHLASATTSEVLLLDAEL 256 (686)
T ss_pred CCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCC-----CEEEEEEEcCCCCEEEEEEECCccccEEEEECcC
Confidence 67666555432 35777888877 33334442221 122 3334547776652 2 457899998644
Q ss_pred CCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecC---CCeEEEEEcCCceeeEEeecc-c-cCeEEEEEccCCC
Q 014125 204 PGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY---SQTSAIYREDNMELLYVLHGQ-E-GGVTHVQFSRDGN 278 (430)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~v~~~d~~~~~~~~~~~~~-~-~~i~~~~~~~~~~ 278 (430)
........ .. ........+. +. +..+++.... ...|...++........+..+ . ..|..+.+. ++
T Consensus 257 ~~~~~~~~--~~----~~~~~~~~~~-~~-~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~ 326 (686)
T PRK10115 257 ADAEPFVF--LP----RRKDHEYSLD-HY-QHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TD 326 (686)
T ss_pred CCCCceEE--EE----CCCCCEEEEE-eC-CCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CC
Confidence 32211111 10 0011112222 22 3333333322 223444455421122233334 2 367777776 44
Q ss_pred EEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEc--CCC-CEEEEEcc---CCcEEEEEcCCCC
Q 014125 279 YLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIE--PSG-RHLGTGGQ---DGLVHIYDLQTGK 345 (430)
Q Consensus 279 ~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~-~~l~~~~~---dg~i~vwd~~~~~ 345 (430)
.|+.....+|.-+++-+.........+. . .....+..+.++ +++ .++++.+. -+.++.+|+.+++
T Consensus 327 ~l~~~~~~~g~~~l~~~~~~~~~~~~l~-~-~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 327 WLVVEERQRGLTSLRQINRKTREVIGIA-F-DDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EEEEEEEeCCEEEEEEEcCCCCceEEec-C-CCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 5555553677665554432211121211 0 111223333344 333 34443333 3668888888764
|
|
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.54 Score=47.58 Aligned_cols=171 Identities=11% Similarity=0.149 Sum_probs=94.2
Q ss_pred CCCceeEEEECcC-CceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeee-eccccCccCC
Q 014125 59 PNNFLKGIKWSPD-GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFC-WFPHMSASDP 136 (430)
Q Consensus 59 h~~~v~~~~~sp~-~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~ 136 (430)
|...-+.+-+-|. ++.- .+-|..+.+|+++++.......... +.|..+. +.|....|-|
T Consensus 77 ~~~~~~~mGiFpeI~RaW--iTiDn~L~lWny~~~~e~~~~d~~s-----------------htIl~V~LvkPkpgvFv~ 137 (1311)
T KOG1900|consen 77 NIECKTDMGIFPEIGRAW--ITIDNNLFLWNYESDNELAEYDGLS-----------------HTILKVGLVKPKPGVFVP 137 (1311)
T ss_pred CcceeeeeccchhhcceE--EEeCCeEEEEEcCCCCccccccchh-----------------hhheeeeeecCCCCcchh
Confidence 3433444545553 3222 3457889999999854433322211 2333332 2233333344
Q ss_pred CCceEEEEeCCCcEEEEeccCCceee-------eeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCC-cc
Q 014125 137 TSCVFASTTRDHPIHLWDATTGLLRC-------TYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGR-DF 208 (430)
Q Consensus 137 ~~~~l~~~~~dg~i~vwd~~~~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~-~~ 208 (430)
.=++++.-..--.|.++-+.-.+... .++.. .....|.++....+|+.+++|.||. +|.+.-... .+
T Consensus 138 ~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~---~dg~~V~~I~~t~nGRIF~~G~dg~--lyEl~Yq~~~gW 212 (1311)
T KOG1900|consen 138 EIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS---VDGVSVNCITYTENGRIFFAGRDGN--LYELVYQAEDGW 212 (1311)
T ss_pred hhheeEEecccceEEEEEEEeccccCcccccccceeee---cCCceEEEEEeccCCcEEEeecCCC--EEEEEEeccCch
Confidence 44455555455556666543221111 11111 1123788999899999999998884 444321110 00
Q ss_pred --c--------------ccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCC
Q 014125 209 --E--------------KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN 254 (430)
Q Consensus 209 --~--------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~ 254 (430)
+ ....+......+..+|..+.... ..+++.+-++.|+|.+||+..
T Consensus 213 f~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~-SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 213 FGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN-SRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred hhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc-ccceeeeeccCceEEEEEccC
Confidence 0 00111112235567999999988 788999999999999999876
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.011 Score=52.57 Aligned_cols=141 Identities=16% Similarity=0.207 Sum_probs=94.3
Q ss_pred CCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE--EEcCCeEEEEEcCCCCCcccccc
Q 014125 135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF--AGYNKSVRVFDVHRPGRDFEKYS 212 (430)
Q Consensus 135 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~~~d~~i~v~d~~~~~~~~~~~~ 212 (430)
.+.+.-++.++.+..+..||-... ........ +....++|..++..++ +-..+.+.+||+.+... .
T Consensus 43 ~~e~~nlavaca~tiv~~YD~agq-~~le~n~t------g~aldm~wDkegdvlavlAek~~piylwd~n~eyt-----q 110 (615)
T KOG2247|consen 43 RPEGHNLAVACANTIVIYYDKAGQ-VILELNPT------GKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT-----Q 110 (615)
T ss_pred ecCCCceehhhhhhHHHhhhhhcc-eecccCCc------hhHhhhhhccccchhhhhhhcCCCeeechhhhhhH-----H
Confidence 345555888888888888885433 22222221 1556788888887776 44789999999976321 1
Q ss_pred cccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEE
Q 014125 213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILC 292 (430)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i 292 (430)
++.. +....-.-+.|++ +...++.+...|.+.+++..+.+.....-.|...++++++.+.+..+. ++ .|..+.+
T Consensus 111 qLE~---gg~~s~sll~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil-~d-cd~~L~v 184 (615)
T KOG2247|consen 111 QLES---GGTSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVIL-CD-CDNTLSV 184 (615)
T ss_pred HHhc---cCcchHHHHhhcc-CCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeee-cC-cHHHHHH
Confidence 1111 1111122267888 778899999999999999988777666666889999999998875444 43 4655544
Q ss_pred E
Q 014125 293 W 293 (430)
Q Consensus 293 ~ 293 (430)
-
T Consensus 185 ~ 185 (615)
T KOG2247|consen 185 T 185 (615)
T ss_pred h
Confidence 3
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.0061 Score=53.97 Aligned_cols=144 Identities=15% Similarity=0.175 Sum_probs=99.4
Q ss_pred eEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEE
Q 014125 225 MSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYK 304 (430)
Q Consensus 225 v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~ 304 (430)
.....|-|.+.+ ++.++.+..+..||-... ...... ..+....++|..++..+++.....+.+.+||+.+.....
T Consensus 37 pi~~~w~~e~~n-lavaca~tiv~~YD~agq-~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqq-- 111 (615)
T KOG2247|consen 37 PIIHRWRPEGHN-LAVACANTIVIYYDKAGQ-VILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQ-- 111 (615)
T ss_pred cceeeEecCCCc-eehhhhhhHHHhhhhhcc-eecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHH--
Confidence 344567775554 777888888999986533 332332 345667889988888776665578999999998653221
Q ss_pred eecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCc
Q 014125 305 LYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHR 376 (430)
Q Consensus 305 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~ 376 (430)
+.....+.. .-+.|++.+..++.+...|.+.|++..+.+.+-..-.|...+++++|.+.+..+ .++.|.
T Consensus 112 LE~gg~~s~--sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vi-l~dcd~ 180 (615)
T KOG2247|consen 112 LESGGTSSK--SLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVI-LCDCDN 180 (615)
T ss_pred HhccCcchH--HHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceee-ecCcHH
Confidence 111112222 227899988999999999999999998877766666688899999999866543 343333
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=94.48 E-value=1.6 Score=42.85 Aligned_cols=79 Identities=10% Similarity=0.048 Sum_probs=50.5
Q ss_pred CcceEEEEEcCCCCceEEEecCCCeEEEEEcC---------Ccee---eEEe--------eccccCeEEEEEccC---CC
Q 014125 222 AGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED---------NMEL---LYVL--------HGQEGGVTHVQFSRD---GN 278 (430)
Q Consensus 222 ~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~---------~~~~---~~~~--------~~~~~~i~~~~~~~~---~~ 278 (430)
...|..+.++| .+.+++..+..|-+.+.=.+ .++. .+.+ ..+...|..+.|+|. +.
T Consensus 84 ~f~v~~i~~n~-~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 84 LFEVHQISLNP-TGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred ceeEEEEEECC-CCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 45799999999 55666666665544332111 1111 1111 123457889999997 46
Q ss_pred EEEEEecCCCeEEEEeCCCCceEE
Q 014125 279 YLYTGGRKDPYILCWDLRKAVQVV 302 (430)
Q Consensus 279 ~l~~~~~~d~~i~i~d~~~~~~~~ 302 (430)
.|++-. .|+.+|+||+.....+.
T Consensus 163 ~l~vLt-sdn~lR~y~~~~~~~p~ 185 (717)
T PF10168_consen 163 HLVVLT-SDNTLRLYDISDPQHPW 185 (717)
T ss_pred eEEEEe-cCCEEEEEecCCCCCCe
Confidence 788887 89999999998655443
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.24 E-value=4.6 Score=37.94 Aligned_cols=185 Identities=10% Similarity=-0.026 Sum_probs=83.9
Q ss_pred CCceEEEEeCCC-----cEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-EcC--CeEEEEEcCCCCCcc
Q 014125 137 TSCVFASTTRDH-----PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYN--KSVRVFDVHRPGRDF 208 (430)
Q Consensus 137 ~~~~l~~~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d--~~i~v~d~~~~~~~~ 208 (430)
++.+++.|+.++ .+..||..+++....-..... . ... +++. -++.+.+. |.+ ..+..||.... .+
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~-r--~~~-~~v~-~~~~iYviGG~~~~~sve~ydp~~n--~W 343 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSP-R--LYA-SGVP-ANNKLYVVGGLPNPTSVERWFHGDA--AW 343 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCch-h--hcc-eEEE-ECCEEEEECCcCCCCceEEEECCCC--eE
Confidence 345667776543 466788877654332222111 0 011 2222 35555554 432 45777876542 22
Q ss_pred cccccccCCCCCCCcceEEEEEcCCCCceEEEecCCC---eEEEEEcCCceeeEE--eeccccCeEEEEEccCCCEEEEE
Q 014125 209 EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ---TSAIYREDNMELLYV--LHGQEGGVTHVQFSRDGNYLYTG 283 (430)
Q Consensus 209 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---~v~~~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~ 283 (430)
.....+.... .....+.+ ++.+.+.|+.++ .+..||.++.+-... +.........+. -++ .|++.
T Consensus 344 ~~~~~l~~~r----~~~~~~~~---~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~--~~~-~IYv~ 413 (480)
T PHA02790 344 VNMPSLLKPR----CNPAVASI---NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALV--FGR-RLFLV 413 (480)
T ss_pred EECCCCCCCC----cccEEEEE---CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEE--ECC-EEEEE
Confidence 2222221111 11222233 566888877653 477888776543221 111111111222 244 45444
Q ss_pred ecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccC-----CcEEEEEcCCCC
Q 014125 284 GRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQD-----GLVHIYDLQTGK 345 (430)
Q Consensus 284 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~ 345 (430)
| |.+.+||.++..-. ..............+. -+|+..+.|+.+ ..+.+||..+.+
T Consensus 414 G---G~~e~ydp~~~~W~--~~~~m~~~r~~~~~~v--~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 414 G---RNAEFYCESSNTWT--LIDDPIYPRDNPELII--VDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred C---CceEEecCCCCcEe--EcCCCCCCccccEEEE--ECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 4 34678888765322 2211111111222222 256777777754 246666666544
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.6 Score=38.29 Aligned_cols=74 Identities=20% Similarity=0.351 Sum_probs=51.9
Q ss_pred EccCCCEEEEEecCCCeEEEEeCCCCceEEEEe-----ecc-----cCCccceEEEEEcCCCCEEEEEccCCcEEEEEcC
Q 014125 273 FSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKL-----YRS-----SEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQ 342 (430)
Q Consensus 273 ~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~-----~~~-----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 342 (430)
+..++.+|++.. .+|.+++||+.+.+...... ... ......|..+.++.+|.-|++-+ +|..+.|+.+
T Consensus 18 l~~~~~~Ll~iT-~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAIT-SSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEe-CCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 344788888888 89999999999875443220 000 03556788899998888777654 5788999887
Q ss_pred CCCeec
Q 014125 343 TGKWIS 348 (430)
Q Consensus 343 ~~~~~~ 348 (430)
-+..+.
T Consensus 96 L~~W~~ 101 (219)
T PF07569_consen 96 LGCWIR 101 (219)
T ss_pred cceeEE
Confidence 655443
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=93.92 E-value=7.2 Score=38.53 Aligned_cols=112 Identities=7% Similarity=-0.000 Sum_probs=64.9
Q ss_pred ceEEEEECCCCcEEEEEc--C----CeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCC----
Q 014125 175 AAFSVAFNPTGTKIFAGY--N----KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS---- 244 (430)
Q Consensus 175 ~v~~~~~~~~~~~l~~~~--d----~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---- 244 (430)
.+..+.++|++++|+.+. + ..|++.|+.++.. +...... .-..++|.+++..++++...+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~-------l~~~i~~---~~~~~~w~~D~~~~~y~~~~~~~~~ 197 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNW-------YPELLDN---VEPSFVWANDSWTFYYVRKHPVTLL 197 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCC-------CCccccC---cceEEEEeeCCCEEEEEEecCCCCC
Confidence 566788999999998542 2 3588888875321 1111111 114589999766666665432
Q ss_pred -CeEEEEEcCCc--eeeEEeeccccCeE-EEEEccCCCEEEEEe--cCCCeEEEEeCC
Q 014125 245 -QTSAIYREDNM--ELLYVLHGQEGGVT-HVQFSRDGNYLYTGG--RKDPYILCWDLR 296 (430)
Q Consensus 245 -g~v~~~d~~~~--~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~--~~d~~i~i~d~~ 296 (430)
..|+.+++.++ +....+........ .+..+.++++++..+ ..++.+.+++..
T Consensus 198 ~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 198 PYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred CCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence 36888888877 33333432223233 333444788766544 134578888853
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.74 E-value=2.7 Score=37.71 Aligned_cols=142 Identities=13% Similarity=0.083 Sum_probs=89.6
Q ss_pred ceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCC
Q 014125 175 AAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN 254 (430)
Q Consensus 175 ~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~ 254 (430)
.-+.+-|...++.+++...|.+.-|.+..++..... ..-....++|.++.|++ +...+|+--.+.+|.+++...
T Consensus 24 esngvFfDDaNkqlfavrSggatgvvvkgpndDVpi-----Sfdm~d~G~I~SIkFSl-DnkilAVQR~~~~v~f~nf~~ 97 (657)
T KOG2377|consen 24 ESNGVFFDDANKQLFAVRSGGATGVVVKGPNDDVPI-----SFDMDDKGEIKSIKFSL-DNKILAVQRTSKTVDFCNFIP 97 (657)
T ss_pred cccceeeccCcceEEEEecCCeeEEEEeCCCCCCCc-----eeeecCCCceeEEEecc-CcceEEEEecCceEEEEecCC
Confidence 344667777777888777788888877665432211 11123346899999999 677999999999999998743
Q ss_pred ceee----EEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEE
Q 014125 255 MELL----YVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLG 328 (430)
Q Consensus 255 ~~~~----~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 328 (430)
.+.. .+.+.....|....|+.+ .-++... +.-+.+|............ ..+...|.-..|.++.+.++
T Consensus 98 d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~--~~G~e~y~v~pekrslRlV---ks~~~nvnWy~yc~et~v~L 169 (657)
T KOG2377|consen 98 DNSQLEYTQECKTKNANILGFCWTSS-TEIAFIT--DQGIEFYQVLPEKRSLRLV---KSHNLNVNWYMYCPETAVIL 169 (657)
T ss_pred CchhhHHHHHhccCcceeEEEEEecC-eeEEEEe--cCCeEEEEEchhhhhhhhh---hhcccCccEEEEccccceEe
Confidence 3322 222233446889999866 4455554 3446666655443322222 45666777777888766533
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=93.59 E-value=4.9 Score=35.52 Aligned_cols=152 Identities=14% Similarity=0.097 Sum_probs=83.4
Q ss_pred ceEEEEEC-CCCcEEEEEcCCe------EEEEEcCCCCCccccc-----ccccCC----CCCCCcceEEEEEcCCCCceE
Q 014125 175 AAFSVAFN-PTGTKIFAGYNKS------VRVFDVHRPGRDFEKY-----STLKGN----KEGQAGIMSAIAFSPTHTGML 238 (430)
Q Consensus 175 ~v~~~~~~-~~~~~l~~~~d~~------i~v~d~~~~~~~~~~~-----~~~~~~----~~~~~~~v~~~~~~~~~~~~l 238 (430)
.+..+.+. .++.+++.+.++. +..+++.......... ..+... +.......-++++.+ ++.++
T Consensus 21 GlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~-~g~~~ 99 (326)
T PF13449_consen 21 GLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPP-DGSFW 99 (326)
T ss_pred cEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEec-CCCEE
Confidence 66788888 4566666777776 6666655411111100 001000 000111345778844 66677
Q ss_pred EEecCC------CeEEEEEcCCceeeEEee---------------ccccCeEEEEEccCCCEEEEEec----CCC--e--
Q 014125 239 AIGSYS------QTSAIYREDNMELLYVLH---------------GQEGGVTHVQFSRDGNYLYTGGR----KDP--Y-- 289 (430)
Q Consensus 239 ~~~~~d------g~v~~~d~~~~~~~~~~~---------------~~~~~i~~~~~~~~~~~l~~~~~----~d~--~-- 289 (430)
++.-.+ ..|+.++.. ++....+. ......-+|+++|+|+.|+++.. .|+ .
T Consensus 100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~ 178 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANP 178 (326)
T ss_pred EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccccc
Confidence 776667 789889876 55433331 12346889999999997776541 122 1
Q ss_pred -----EEEE--eCCCCc-eEEEEeecccC-----CccceEEEEEcCCCCEEE
Q 014125 290 -----ILCW--DLRKAV-QVVYKLYRSSE-----HTNQRILFDIEPSGRHLG 328 (430)
Q Consensus 290 -----i~i~--d~~~~~-~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~ 328 (430)
++++ |..+.. ......+.... ....+..+.+-+++++|+
T Consensus 179 ~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLv 230 (326)
T PF13449_consen 179 DNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLV 230 (326)
T ss_pred ccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEE
Confidence 4454 444311 11111122122 467788899999988765
|
|
| >PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[] | Back alignment and domain information |
|---|
Probab=93.54 E-value=7.8 Score=38.74 Aligned_cols=67 Identities=10% Similarity=0.038 Sum_probs=48.8
Q ss_pred cceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccc----c-----------c----ccCCeeEEEEcCCCcEEEEee
Q 014125 313 NQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGF----Q-----------A----AADTVNGFSFHPFLPMAASSS 373 (430)
Q Consensus 313 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~----~-----------~----~~~~v~~~~~~~~~~~l~s~~ 373 (430)
..|.++....-+.+++..-.||+|.++|-.+.+.+... . | ...++..++|+|++-.++.-.
T Consensus 260 ~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~ 339 (753)
T PF11635_consen 260 KRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQID 339 (753)
T ss_pred CeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEe
Confidence 55667777677889999999999999998877555433 1 0 111344688999999888888
Q ss_pred CCceee
Q 014125 374 GHRRFP 379 (430)
Q Consensus 374 ~d~~~~ 379 (430)
.++.+.
T Consensus 340 ~~~~~~ 345 (753)
T PF11635_consen 340 EDGKTK 345 (753)
T ss_pred cCCCce
Confidence 777644
|
It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM. |
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=93.54 E-value=9.1 Score=38.45 Aligned_cols=162 Identities=12% Similarity=0.097 Sum_probs=98.0
Q ss_pred ceEEEEEC---C----CCcEEEEEcCCeEEEEEcCCCCC------cc-----cccccccCCCCCCCcceEEEEEcCCCCc
Q 014125 175 AAFSVAFN---P----TGTKIFAGYNKSVRVFDVHRPGR------DF-----EKYSTLKGNKEGQAGIMSAIAFSPTHTG 236 (430)
Q Consensus 175 ~v~~~~~~---~----~~~~l~~~~d~~i~v~d~~~~~~------~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 236 (430)
+|..|+|. . ..++|++=....+.|+....... .. ..+..+... .-...+...++|+|....
T Consensus 81 PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~-~tgg~~~aDv~FnP~~~~ 159 (765)
T PF10214_consen 81 PIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSS-DTGGFPHADVAFNPWDQR 159 (765)
T ss_pred CeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechh-hcCCCccceEEeccCccc
Confidence 77777776 2 23577777778888888322111 00 011111111 112346889999999888
Q ss_pred eEEEecCCCeEEEEEcCCce-----eeEEeecccc----------CeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceE
Q 014125 237 MLAIGSYSQTSAIYREDNME-----LLYVLHGQEG----------GVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQV 301 (430)
Q Consensus 237 ~l~~~~~dg~v~~~d~~~~~-----~~~~~~~~~~----------~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~ 301 (430)
.||+....|...||++.... .......+.+ .-..+.|.++...|+++. ...+.++|+++....
T Consensus 160 q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~--r~~l~~~d~~~~~~~ 237 (765)
T PF10214_consen 160 QFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN--RSKLMLIDFESNWQT 237 (765)
T ss_pred eEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc--CCceEEEECCCCCcc
Confidence 99999999999999992111 1111111112 234788988888888875 678999999987543
Q ss_pred EEEeecccCCccceEEEEEcCC--CCEEEEEccCCcEEEEEcCC
Q 014125 302 VYKLYRSSEHTNQRILFDIEPS--GRHLGTGGQDGLVHIYDLQT 343 (430)
Q Consensus 302 ~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~vwd~~~ 343 (430)
.. +. .......|..+.-+|. +..++-.+ ..|...++..
T Consensus 238 ~~-l~-~~~~~~~IlDv~~~~~~~~~~FiLTs--~eiiw~~~~~ 277 (765)
T PF10214_consen 238 EY-LV-TAKTWSWILDVKRSPDNPSHVFILTS--KEIIWLDVKS 277 (765)
T ss_pred ch-hc-cCCChhheeeEEecCCccceEEEEec--CeEEEEEccC
Confidence 21 21 1345667888888876 23332222 4577777765
|
These proteins are found in fungi. |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.58 Score=38.40 Aligned_cols=67 Identities=10% Similarity=0.101 Sum_probs=48.1
Q ss_pred CCceEEEEeCCCcEEEEeccCCceeeee-eccccc--------ccccceEEEEECCCCcEEEEEcCCeEEEEEcCC
Q 014125 137 TSCVFASTTRDHPIHLWDATTGLLRCTY-RAYDAV--------DEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHR 203 (430)
Q Consensus 137 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~ 203 (430)
++.+|++.+.+|.+++||+.+++.+..- ....-. .....|..+.++.+|.-+++-.+|..+.|+.+-
T Consensus 21 ~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L 96 (219)
T PF07569_consen 21 NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDL 96 (219)
T ss_pred CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEecccc
Confidence 6778999999999999999998765432 100000 233478888888888877766678888888754
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.48 E-value=3.2 Score=33.10 Aligned_cols=177 Identities=10% Similarity=0.147 Sum_probs=85.3
Q ss_pred CCceEEEecC--CCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCC
Q 014125 71 DGSSFLTSSE--DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDH 148 (430)
Q Consensus 71 ~~~~l~s~~~--dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg 148 (430)
+|.++.+.+. ...|++||+.+++......... +..-..-...-+..++.+.| .+|
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~-----~~~FgEGit~~gd~~y~LTw------------------~eg 111 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAP-----DTVFGEGITKLGDYFYQLTW------------------KEG 111 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCC-----ccccccceeeccceEEEEEe------------------ccc
Confidence 4567777665 3469999999876543322210 00000001112234555555 577
Q ss_pred cEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccccccccCCCCCC-CcceE
Q 014125 149 PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQ-AGIMS 226 (430)
Q Consensus 149 ~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~v~ 226 (430)
.-..+|..+-+.+..+.... .-+.++ .|++.|+.+ ....++.-|..+-... ....-...+. -..++
T Consensus 112 vaf~~d~~t~~~lg~~~y~G------eGWgLt--~d~~~LimsdGsatL~frdP~tfa~~----~~v~VT~~g~pv~~LN 179 (262)
T COG3823 112 VAFKYDADTLEELGRFSYEG------EGWGLT--SDDKNLIMSDGSATLQFRDPKTFAEL----DTVQVTDDGVPVSKLN 179 (262)
T ss_pred eeEEEChHHhhhhcccccCC------cceeee--cCCcceEeeCCceEEEecCHHHhhhc----ceEEEEECCeeccccc
Confidence 78888888777666555433 334444 355555544 4445555554331110 0000000000 01122
Q ss_pred EEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEee------------ccccCeEEEEEccCCCEEEEEe
Q 014125 227 AIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH------------GQEGGVTHVQFSRDGNYLYTGG 284 (430)
Q Consensus 227 ~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~------------~~~~~i~~~~~~~~~~~l~~~~ 284 (430)
.+.|- ++.++|-.-.+..|...+..+|+.+.-+. .+..-.+.+++.|++..++..+
T Consensus 180 ELE~V--dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 180 ELEWV--DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred ceeee--ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 33332 22233333334444444555555443322 2344678899999887776666
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.47 E-value=6.8 Score=36.83 Aligned_cols=142 Identities=9% Similarity=0.042 Sum_probs=64.4
Q ss_pred CCceEEEEeCC--CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcC---CeEEEEEcCCCCCcccc
Q 014125 137 TSCVFASTTRD--HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYN---KSVRVFDVHRPGRDFEK 210 (430)
Q Consensus 137 ~~~~l~~~~~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d---~~i~v~d~~~~~~~~~~ 210 (430)
++.+.+.|+.+ ..+..||..+++....-..... ......+. -+|++.+ +|.+ ..+..||..+. .+..
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~---r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~--~W~~ 390 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKP---RCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHD--QWQF 390 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCC---CcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCC--EEEe
Confidence 56667777754 3577888766654332221111 00111222 2555555 4433 35677887642 2222
Q ss_pred cccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceee--EEeeccccCeEEEEEccCCCEEEEEecCC-
Q 014125 211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELL--YVLHGQEGGVTHVQFSRDGNYLYTGGRKD- 287 (430)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~~d- 287 (430)
...+..... ....+.+ ++.+++.| |.+.+||..+.+-. ..+.........+. -+++..++|| .+
T Consensus 391 ~~~m~~~r~----~~~~~~~---~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r~~~~~~v--~~~~IYviGG-~~~ 457 (480)
T PHA02790 391 GPSTYYPHY----KSCALVF---GRRLFLVG---RNAEFYCESSNTWTLIDDPIYPRDNPELII--VDNKLLLIGG-FYR 457 (480)
T ss_pred CCCCCCccc----cceEEEE---CCEEEEEC---CceEEecCCCCcEeEcCCCCCCccccEEEE--ECCEEEEECC-cCC
Confidence 211111111 1122222 55677777 45778888765432 22221112222222 2555555555 33
Q ss_pred ----CeEEEEeCCCC
Q 014125 288 ----PYILCWDLRKA 298 (430)
Q Consensus 288 ----~~i~i~d~~~~ 298 (430)
..+..||..+.
T Consensus 458 ~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 458 GSYIDTIEVYNNRTY 472 (480)
T ss_pred CcccceEEEEECCCC
Confidence 24556665544
|
|
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=93.41 E-value=4.7 Score=34.79 Aligned_cols=174 Identities=14% Similarity=0.151 Sum_probs=91.8
Q ss_pred CCcceEEEEEcCCCC-----ceEEEecCCCeEEEEEcCCceeeEEeecc-------------------ccCeEEEEEcc-
Q 014125 221 QAGIMSAIAFSPTHT-----GMLAIGSYSQTSAIYREDNMELLYVLHGQ-------------------EGGVTHVQFSR- 275 (430)
Q Consensus 221 ~~~~v~~~~~~~~~~-----~~l~~~~~dg~v~~~d~~~~~~~~~~~~~-------------------~~~i~~~~~~~- 275 (430)
..+.+..+.+....+ ..+++=+..+.|.+||+.+++..+.+..+ ...+..++.+|
T Consensus 59 ~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~ 138 (287)
T PF03022_consen 59 PDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPI 138 (287)
T ss_dssp TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TT
T ss_pred cccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCC
Confidence 445678888776322 23344444578999999988765544321 12356666655
Q ss_pred --CCCEEEEEecCCCeEEEEeCC-----CCce--------EEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEE
Q 014125 276 --DGNYLYTGGRKDPYILCWDLR-----KAVQ--------VVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYD 340 (430)
Q Consensus 276 --~~~~l~~~~~~d~~i~i~d~~-----~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd 340 (430)
+++.|+-.. ..+ -++|.+. +... ....+. ........++++++|.+.++--..+.|..|+
T Consensus 139 ~~d~r~LYf~~-lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG---~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~ 213 (287)
T PF03022_consen 139 SPDGRWLYFHP-LSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLG---DKGSQSDGMAIDPNGNLYFTDVEQNAIGCWD 213 (287)
T ss_dssp STTS-EEEEEE-TT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEE---E---SECEEEEETTTEEEEEECCCTEEEEEE
T ss_pred CCCccEEEEEe-CCC-CcEEEEEHHHhhCccccccccccccceecc---ccCCCCceEEECCCCcEEEecCCCCeEEEEe
Confidence 566666555 222 1223221 1110 001110 1113445688899999998888999999999
Q ss_pred cCCCC---eecccccc---cCCeeEEEEcC--CCcEEEEeeCCceeeecCCCccccc---cCCCcEEEEeeccccccc
Q 014125 341 LQTGK---WISGFQAA---ADTVNGFSFHP--FLPMAASSSGHRRFPVDDFEDLHLS---GDENCVSVWSFLYASMME 407 (430)
Q Consensus 341 ~~~~~---~~~~~~~~---~~~v~~~~~~~--~~~~l~s~~~d~~~~vw~~~~l~~~---~~d~~i~~w~~~~~~~~~ 407 (430)
..+.- ....+... -..+.++.+.+ +|.+.+.+.. ...+... .++-..++|.....++++
T Consensus 214 ~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~snr--------l~~~~~~~~~~~e~nfri~~~~v~~~~~ 283 (287)
T PF03022_consen 214 PDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSNR--------LQRFAYGNLNPDEVNFRIWRARVDELIK 283 (287)
T ss_dssp TTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-S----------SSTGGG---SS-SEEEEES-HHHHHT
T ss_pred CCCCcCccchheeEEcCceeeccceeeeccccCceEEEEECc--------chHhhccCCCCCccEEeEEEeCHHHHhc
Confidence 88621 12222211 23678999999 7877776652 2222221 246677888776655543
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=93.31 E-value=6.2 Score=35.83 Aligned_cols=148 Identities=9% Similarity=0.076 Sum_probs=79.8
Q ss_pred eEEEEECCCCcEEEEEcCCeEEE-EEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCC
Q 014125 176 AFSVAFNPTGTKIFAGYNKSVRV-FDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN 254 (430)
Q Consensus 176 v~~~~~~~~~~~l~~~~d~~i~v-~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~ 254 (430)
...+..++++.+++.+..|.+.. ||--. ..+.. ........++.+.+.+ ++.+++++ ..|.+.. ....
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~--~~W~~------~~~~~~~~l~~v~~~~-dg~l~l~g-~~G~l~~-S~d~ 309 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQ--PYWQP------HNRASARRIQNMGWRA-DGGLWLLT-RGGGLYV-SKGT 309 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCC--cceEE------ecCCCccceeeeeEcC-CCCEEEEe-CCceEEE-ecCC
Confidence 34556778888888887775443 33211 00111 1122345688999988 45455554 5566543 3333
Q ss_pred ce-----eeEEeec--cccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEE
Q 014125 255 ME-----LLYVLHG--QEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHL 327 (430)
Q Consensus 255 ~~-----~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 327 (430)
++ ....... ....++.+.|.+++..++++ ..|.+.... ..+ +..........-...++.+.|.++++.+
T Consensus 310 G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G--~~G~v~~s~-D~G-~tW~~~~~~~~~~~~ly~v~f~~~~~g~ 385 (398)
T PLN00033 310 GLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG--GSGILLRST-DGG-KSWKRDKGADNIAANLYSVKFFDDKKGF 385 (398)
T ss_pred CCcccccceeecccCCCCcceEEEEEcCCCcEEEEE--CCCcEEEeC-CCC-cceeEccccCCCCcceeEEEEcCCCceE
Confidence 32 1222221 12358899999887766555 578766653 222 2222221112334567889988776666
Q ss_pred EEEccCCcEEEE
Q 014125 328 GTGGQDGLVHIY 339 (430)
Q Consensus 328 ~~~~~dg~i~vw 339 (430)
++| .+|.|.-|
T Consensus 386 ~~G-~~G~il~~ 396 (398)
T PLN00033 386 VLG-NDGVLLRY 396 (398)
T ss_pred EEe-CCcEEEEe
Confidence 555 66766544
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=93.19 E-value=4.5 Score=33.88 Aligned_cols=218 Identities=15% Similarity=0.150 Sum_probs=124.9
Q ss_pred CCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccc
Q 014125 135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTL 214 (430)
Q Consensus 135 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~ 214 (430)
.+||..-+++...|.|--.|..+|+....--.... ....+..-||+..-++-....|.-.|-++.+ . ..+
T Consensus 70 apdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga-----~Phgiv~gpdg~~Witd~~~aI~R~dpkt~e--v---t~f 139 (353)
T COG4257 70 APDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGA-----SPHGIVVGPDGSAWITDTGLAIGRLDPKTLE--V---TRF 139 (353)
T ss_pred CCCCceEEecCccccceecCCCCCceEEEecCCCC-----CCceEEECCCCCeeEecCcceeEEecCcccc--e---EEe
Confidence 77898999999999999999999986654333322 4456777888866665433344444443311 1 111
Q ss_pred cCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeec-cccCeEEEEEccCCCEEEEEecCCCeEEEE
Q 014125 215 KGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG-QEGGVTHVQFSRDGNYLYTGGRKDPYILCW 293 (430)
Q Consensus 215 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~ 293 (430)
...............|.+ .+++.+++... .---.|.. ...+..+.. ....-+.|+..|+|..-++.- .+..|-..
T Consensus 140 ~lp~~~a~~nlet~vfD~-~G~lWFt~q~G-~yGrLdPa-~~~i~vfpaPqG~gpyGi~atpdGsvwyasl-agnaiari 215 (353)
T COG4257 140 PLPLEHADANLETAVFDP-WGNLWFTGQIG-AYGRLDPA-RNVISVFPAPQGGGPYGICATPDGSVWYASL-AGNAIARI 215 (353)
T ss_pred ecccccCCCcccceeeCC-CccEEEeeccc-cceecCcc-cCceeeeccCCCCCCcceEECCCCcEEEEec-cccceEEc
Confidence 111233345577788988 66677776532 11111111 112223322 234567889999999888776 77788777
Q ss_pred eCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCe-ecccccccCCeeEEEEcCCCcE
Q 014125 294 DLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKW-ISGFQAAADTVNGFSFHPFLPM 368 (430)
Q Consensus 294 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~ 368 (430)
|.......... ...........+--+|.|+.-++-...+.+..+|-.+... ...+.+....-.++.....++.
T Consensus 216 dp~~~~aev~p--~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grV 289 (353)
T COG4257 216 DPFAGHAEVVP--QPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRV 289 (353)
T ss_pred ccccCCcceec--CCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCcE
Confidence 77665332211 1122233344555677888888877778888888765442 2233333333444444444443
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=92.87 E-value=6.7 Score=35.05 Aligned_cols=190 Identities=21% Similarity=0.264 Sum_probs=96.3
Q ss_pred CCCcEEEE-EcCCeEEEEEcCCCCCcccccccccCCCCCCCc---ceEEEEEcCCCCce-EEEec-CC---CeEEEEEcC
Q 014125 183 PTGTKIFA-GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAG---IMSAIAFSPTHTGM-LAIGS-YS---QTSAIYRED 253 (430)
Q Consensus 183 ~~~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~-l~~~~-~d---g~v~~~d~~ 253 (430)
|...+|++ ..++-+.+||+.... . ..+. .+... -...+.+. +... |++++ .+ .+|++|.+.
T Consensus 66 p~kSlIigTdK~~GL~VYdL~Gk~--l---q~~~---~Gr~NNVDvrygf~l~--g~~vDlavas~R~~g~n~l~~f~id 135 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDGKE--L---QSLP---VGRPNNVDVRYGFPLN--GKTVDLAVASDRSDGRNSLRLFRID 135 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS-E--E---EEE----SS-EEEEEEEEEEEET--TEEEEEEEEEE-CCCT-EEEEEEEE
T ss_pred cccceEEEEeCCCCEEEEcCCCcE--E---Eeec---CCCcceeeeecceecC--CceEEEEEEecCcCCCCeEEEEEec
Confidence 33445554 478889999997521 1 1111 11111 11222222 2222 44443 32 469999765
Q ss_pred --CceeeEEeec-------cccCeEEEEE--cc-CCC-EEEEEecCCCeEEEEeCCCC--ceEEEEeecccCCccceEEE
Q 014125 254 --NMELLYVLHG-------QEGGVTHVQF--SR-DGN-YLYTGGRKDPYILCWDLRKA--VQVVYKLYRSSEHTNQRILF 318 (430)
Q Consensus 254 --~~~~~~~~~~-------~~~~i~~~~~--~~-~~~-~l~~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~~~~~v~~~ 318 (430)
++. +..+.. ....++.+|+ +| +|. +.++.. .+|.+..|.+... ......+.+...-.+.+..|
T Consensus 136 ~~~g~-L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~-k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGC 213 (381)
T PF02333_consen 136 PDTGE-LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNG-KDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGC 213 (381)
T ss_dssp TTTTE-EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEE-TTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEE
T ss_pred CCCCc-ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEec-CCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEE
Confidence 333 323221 1124677776 33 455 455555 8999988887521 11211222222334578889
Q ss_pred EEcCCCCEEEEEccCCcEEEEEcCCC-----Ceeccccc--ccCCeeEEEEc--CCCc--EEEEeeCCceeeecCCC
Q 014125 319 DIEPSGRHLGTGGQDGLVHIYDLQTG-----KWISGFQA--AADTVNGFSFH--PFLP--MAASSSGHRRFPVDDFE 384 (430)
Q Consensus 319 ~~~~~~~~l~~~~~dg~i~vwd~~~~-----~~~~~~~~--~~~~v~~~~~~--~~~~--~l~s~~~d~~~~vw~~~ 384 (430)
.......+|..|-++--|.-|+.+.. +.+....+ ....|..|+.- +++. +|++.-.++.+.||+.+
T Consensus 214 VVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~ 290 (381)
T PF02333_consen 214 VVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDRE 290 (381)
T ss_dssp EEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESS
T ss_pred EEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecC
Confidence 99888889999999977888887622 22322222 34467778774 3333 45555557788888654
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.67 E-value=5.6 Score=33.67 Aligned_cols=188 Identities=14% Similarity=0.068 Sum_probs=101.8
Q ss_pred CCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCccccccccc
Q 014125 137 TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLK 215 (430)
Q Consensus 137 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~ 215 (430)
.+++...+..+.-+++.|+.+............. +-..++. -.|++...+ .+.-+.+.|+..+..+. +.
T Consensus 95 se~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~---gyaygv~--vsGn~aYVadlddgfLivdvsdpssP~-----la 164 (370)
T COG5276 95 SEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTD---GYAYGVY--VSGNYAYVADLDDGFLIVDVSDPSSPQ-----LA 164 (370)
T ss_pred cccEEEEEcCCCceEEEeccCCCCcceeccccCC---ceEEEEE--ecCCEEEEeeccCcEEEEECCCCCCce-----ee
Confidence 3557777777777999999876544333322210 1223333 457777755 57778888998765432 22
Q ss_pred CCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceee---EEeeccccCeEEEEEccCCCEEEEEecCCCeEEE
Q 014125 216 GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELL---YVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILC 292 (430)
Q Consensus 216 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~---~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i 292 (430)
............++.+ ++....+..|+-+.+.|+...... .... ....+.++..+++..+++.. +--+.+
T Consensus 165 grya~~~~d~~~v~IS---Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~g~~sv~vsdnr~y~vvy---~egvli 237 (370)
T COG5276 165 GRYALPGGDTHDVAIS---GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGPGTYSVSVSDNRAYLVVY---DEGVLI 237 (370)
T ss_pred eeeccCCCCceeEEEe---cCeEEEEEeCCCeEEEEccCCCCCeEEEEEe-cCCceEEEEecCCeeEEEEc---ccceEE
Confidence 2222222333455664 446677778999999998765322 2222 22367888888776666554 344666
Q ss_pred EeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCC
Q 014125 293 WDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQT 343 (430)
Q Consensus 293 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 343 (430)
-|..+...+...-.........++.+.. .+++...+..+.-+-+-|+.+
T Consensus 238 vd~s~~ssp~~~gsyet~~p~~~s~v~V--s~~~~Yvadga~gl~~idisn 286 (370)
T COG5276 238 VDVSGPSSPTVFGSYETSNPVSISTVPV--SGEYAYVADGAKGLPIIDISN 286 (370)
T ss_pred EecCCCCCceEeeccccCCcccccceec--ccceeeeeccccCceeEeccC
Confidence 6777665332211111111122222333 345555555555555555543
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=92.57 E-value=2.4 Score=38.46 Aligned_cols=109 Identities=11% Similarity=0.017 Sum_probs=62.3
Q ss_pred ceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCee-eeeeeccc
Q 014125 52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESV-YDFCWFPH 130 (430)
Q Consensus 52 ~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~ 130 (430)
....+......+.+|..+|++++.|+...-|.|.++|+..+..+.-.++..-.. ..-+.......- ..-...+.
T Consensus 299 ~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAq-----c~wi~~~~~~~~~~~~~~~~~ 373 (415)
T PF14655_consen 299 MRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQ-----CGWIEVPEEGDRDRSNSNSPK 373 (415)
T ss_pred eEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccce-----EEEEEeecccccccccccccC
Confidence 344566667779999999999999888778999999999887665444332100 000000000000 00000000
Q ss_pred cCccCCCCceEEEEeCCCcEEEEeccCCceeeeeec
Q 014125 131 MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRA 166 (430)
Q Consensus 131 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 166 (430)
. .-...--+++-+-.-|.|.||.+..|..+..+..
T Consensus 374 ~-~~~~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 374 S-SSRFALFLVIYAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred C-CCcceEEEEEEeccCCeEEEEecCCCCEEEEEEe
Confidence 0 0000111455667789999999999987666554
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=92.34 E-value=2.8 Score=40.19 Aligned_cols=112 Identities=21% Similarity=0.378 Sum_probs=63.0
Q ss_pred CCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCc
Q 014125 60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC 139 (430)
Q Consensus 60 ~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (430)
...++++.-+|.|+.++.+..||+|++|++.......- + ....+-..+.| .+.
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski---~---------------~~~~p~~nlv~---------tnh 66 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKI---C---------------EEAKPKENLVF---------TNH 66 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccchhhh---h---------------hhcCCccceee---------ecc
Confidence 34478899999999999999999999999864422100 0 00112222222 122
Q ss_pred eEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEc
Q 014125 140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDV 201 (430)
Q Consensus 140 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~ 201 (430)
-|+++..|..+.-|.- .|-..+.+..... ......++...|..+.+++.--|-|.-+|.
T Consensus 67 gl~~~tsdrr~la~~~-dgvvqqqfdyndq--sekefss~~cdptaqnvvgtlcggv~q~dc 125 (1636)
T KOG3616|consen 67 GLVTATSDRRALAWKE-DGVVQQQFDYNDQ--SEKEFSSILCDPTAQNVVGTLCGGVEQFDC 125 (1636)
T ss_pred ceEEEeccchhheeec-cCcchhhccccch--hhhhccceecCchhhhhhhhhccceeeehH
Confidence 3667777777777763 3333333332221 112455666777776666443344544543
|
|
| >KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.31 E-value=14 Score=37.83 Aligned_cols=188 Identities=15% Similarity=0.120 Sum_probs=95.6
Q ss_pred CCcEEEEeccCCceeeeeecccccccccceEEEEECCC------CcEEEEE------c----CCeEEEEEcCC----CCC
Q 014125 147 DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT------GTKIFAG------Y----NKSVRVFDVHR----PGR 206 (430)
Q Consensus 147 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~------~----d~~i~v~d~~~----~~~ 206 (430)
.+.|.+....+.+.+..+..... ++...+..+..... ..+|++| . .|.+.++|+-. +++
T Consensus 1003 ~f~i~LisP~sw~vi~~iefq~~-E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgk 1081 (1366)
T KOG1896|consen 1003 QFSIQLISPESWEVIDKIEFQEN-EHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGK 1081 (1366)
T ss_pred cceeEEecCCccccccccccCcc-ceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEEEecCCCCC
Confidence 34566666666655554333221 22222222222211 2456643 1 38899999753 333
Q ss_pred cccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEc-CCceeeEEeeccccCeEEEEEccCCCEEEEEec
Q 014125 207 DFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRE-DNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGR 285 (430)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 285 (430)
+........-..+...++|..++=-. + .|+++ ....|.+|++ +....+..-- -.-++.-....--+++|+.+.
T Consensus 1082 P~t~~KlKel~~eE~KGtVsavceV~--G-~l~~~-~GqKI~v~~l~r~~~ligVaF-iD~~~yv~s~~~vknlIl~gD- 1155 (1366)
T KOG1896|consen 1082 PFTKNKLKELYIEEQKGTVSAVCEVR--G-HLLSS-QGQKIIVRKLDRDSELIGVAF-IDLPLYVHSMKVVKNLILAGD- 1155 (1366)
T ss_pred CcccceeeeeehhhcccceEEEEEec--c-EEEEc-cCcEEEEEEeccCCcceeeEE-eccceeEEehhhhhhheehhh-
Confidence 33222111112234456777766432 2 45544 3567899998 4333321110 112233333333455666666
Q ss_pred CCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCC--CEEEEEccCCcEEEEEcC
Q 014125 286 KDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSG--RHLGTGGQDGLVHIYDLQ 342 (430)
Q Consensus 286 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~vwd~~ 342 (430)
--..|.+.-........ .+.......-.+.+..|--+| -+++++..|+.|++|-..
T Consensus 1156 V~ksisfl~fqeep~rl-sL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~ 1213 (1366)
T KOG1896|consen 1156 VMKSISFLGFQEEPYRL-SLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMYA 1213 (1366)
T ss_pred hhhceEEEEEccCceEE-EEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEeC
Confidence 55666666655443322 222223344556777776666 357888899999988654
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=92.00 E-value=8.4 Score=34.17 Aligned_cols=188 Identities=12% Similarity=0.082 Sum_probs=93.6
Q ss_pred ceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCC
Q 014125 175 AAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN 254 (430)
Q Consensus 175 ~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~ 254 (430)
.+.++.|.++ ..++++..+. +|.....+..+....... ...++ ........+ ...+++ ...|.|..= .+.
T Consensus 91 ~l~~v~~~~~-~~~~~G~~g~--i~~S~DgG~tW~~~~~~~-~~~~~--~~~i~~~~~--~~~~~~-g~~G~i~~S-~Dg 160 (334)
T PRK13684 91 RLISISFKGD-EGWIVGQPSL--LLHTTDGGKNWTRIPLSE-KLPGS--PYLITALGP--GTAEMA-TNVGAIYRT-TDG 160 (334)
T ss_pred ceeeeEEcCC-cEEEeCCCce--EEEECCCCCCCeEccCCc-CCCCC--ceEEEEECC--Ccceee-eccceEEEE-CCC
Confidence 4667877654 3455565554 444455555554332110 11122 122223333 223333 344444322 222
Q ss_pred ceeeEEee-ccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccC
Q 014125 255 MELLYVLH-GQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQD 333 (430)
Q Consensus 255 ~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 333 (430)
++.-..+. ...+.+..+.+.|++.+++++ ..|.+..- .+.+........ ......+..+.+.++++.+++| ..
T Consensus 161 G~tW~~~~~~~~g~~~~i~~~~~g~~v~~g--~~G~i~~s-~~~gg~tW~~~~--~~~~~~l~~i~~~~~g~~~~vg-~~ 234 (334)
T PRK13684 161 GKNWEALVEDAAGVVRNLRRSPDGKYVAVS--SRGNFYST-WEPGQTAWTPHQ--RNSSRRLQSMGFQPDGNLWMLA-RG 234 (334)
T ss_pred CCCceeCcCCCcceEEEEEECCCCeEEEEe--CCceEEEE-cCCCCCeEEEee--CCCcccceeeeEcCCCCEEEEe-cC
Confidence 33222221 224578899999998776655 46655432 122212222221 2445678899999999877765 45
Q ss_pred CcEEEEEcCCCCeeccccc----ccCCeeEEEEcCCCcEEEEeeCCceee
Q 014125 334 GLVHIYDLQTGKWISGFQA----AADTVNGFSFHPFLPMAASSSGHRRFP 379 (430)
Q Consensus 334 g~i~vwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~s~~~d~~~~ 379 (430)
|.+++=..+.+..-..... ....+.++.+.|++..++++ .+|.+.
T Consensus 235 G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~ 283 (334)
T PRK13684 235 GQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL 283 (334)
T ss_pred CEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE
Confidence 7665323444433222221 12357888999987766554 445443
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=91.76 E-value=8.8 Score=33.91 Aligned_cols=146 Identities=17% Similarity=0.254 Sum_probs=82.4
Q ss_pred cceEEEEEcCCCCceEEEecCCCe------EEEEEcCC--c--eee-----EEeecccc--------CeEEEEEccCCCE
Q 014125 223 GIMSAIAFSPTHTGMLAIGSYSQT------SAIYREDN--M--ELL-----YVLHGQEG--------GVTHVQFSRDGNY 279 (430)
Q Consensus 223 ~~v~~~~~~~~~~~~l~~~~~dg~------v~~~d~~~--~--~~~-----~~~~~~~~--------~i~~~~~~~~~~~ 279 (430)
+.++.+.+.|+++ .+++.+.+|. +..+++.. + ..+ ..+....+ ..-+|++.++|.+
T Consensus 20 GGlSgl~~~~~~~-~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 20 GGLSGLDYDPDDG-RFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred CcEeeEEEeCCCC-EEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 5688899987444 5555566666 55555443 1 111 11111111 3447888777777
Q ss_pred EEEEecCC------CeEEEEeCCCCceEEEEe-----e-------cccCCccceEEEEEcCCCCEEEEEcc-----CC--
Q 014125 280 LYTGGRKD------PYILCWDLRKAVQVVYKL-----Y-------RSSEHTNQRILFDIEPSGRHLGTGGQ-----DG-- 334 (430)
Q Consensus 280 l~~~~~~d------~~i~i~d~~~~~~~~~~~-----~-------~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg-- 334 (430)
+++.- .+ ..|+.++.. +.. ...+ . .........-+++++|+|+.|+++.+ |+
T Consensus 99 ~is~E-~~~~~~~~p~I~~~~~~-G~~-~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~ 175 (326)
T PF13449_consen 99 WISSE-GGRTGGIPPRIRRFDLD-GRV-IRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPR 175 (326)
T ss_pred EEEeC-CccCCCCCCEEEEECCC-Ccc-cceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcc
Confidence 66655 66 778888866 222 1111 0 11234556789999999997666644 22
Q ss_pred c-------EEEE--EcCC-CCeec----cccc-----ccCCeeEEEEcCCCcEEEEe
Q 014125 335 L-------VHIY--DLQT-GKWIS----GFQA-----AADTVNGFSFHPFLPMAASS 372 (430)
Q Consensus 335 ~-------i~vw--d~~~-~~~~~----~~~~-----~~~~v~~~~~~~~~~~l~s~ 372 (430)
. ++++ |..+ ++... .+.. ....|..+.+.+++++|+.=
T Consensus 176 ~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLE 232 (326)
T PF13449_consen 176 ANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLE 232 (326)
T ss_pred cccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEE
Confidence 1 4444 4444 32222 2222 34578899999999877653
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=91.69 E-value=0.93 Score=25.02 Aligned_cols=30 Identities=20% Similarity=0.383 Sum_probs=21.5
Q ss_pred cccCeEEEEEccCCCEEEEEecCC--CeEEEE
Q 014125 264 QEGGVTHVQFSRDGNYLYTGGRKD--PYILCW 293 (430)
Q Consensus 264 ~~~~i~~~~~~~~~~~l~~~~~~d--~~i~i~ 293 (430)
....-....|+|||+.|+-++..+ |...||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 445677899999999988777566 666555
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.64 E-value=5.9 Score=31.68 Aligned_cols=176 Identities=13% Similarity=0.092 Sum_probs=89.1
Q ss_pred CCcEEE-EE--cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEE
Q 014125 184 TGTKIF-AG--YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYV 260 (430)
Q Consensus 184 ~~~~l~-~~--~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~ 260 (430)
+|.++. +| ....|++||+..+.......... ....+ ..++.+ +..+..-.-.+|.-..||.++.+.+..
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~-~~~Fg--EGit~~-----gd~~y~LTw~egvaf~~d~~t~~~lg~ 126 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAP-DTVFG--EGITKL-----GDYFYQLTWKEGVAFKYDADTLEELGR 126 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCC-ccccc--cceeec-----cceEEEEEeccceeEEEChHHhhhhcc
Confidence 344444 44 45689999998653322111110 00000 111111 233444445577778888888877766
Q ss_pred eeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecc-cCCccceEEEEEcCCCCEEEEEccCCcEEEE
Q 014125 261 LHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRS-SEHTNQRILFDIEPSGRHLGTGGQDGLVHIY 339 (430)
Q Consensus 261 ~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 339 (430)
+. .++.=..++. |++.|+.+. ....++.-|..+........... ...-..++-+.|- +|...|-.=.+..|...
T Consensus 127 ~~-y~GeGWgLt~--d~~~Limsd-GsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI 201 (262)
T COG3823 127 FS-YEGEGWGLTS--DDKNLIMSD-GSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARI 201 (262)
T ss_pred cc-cCCcceeeec--CCcceEeeC-CceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEE
Confidence 65 3444466654 555566665 45566666654432211111110 1111223334443 35555544445556666
Q ss_pred EcCCCCeecccc------------cccCCeeEEEEcCCC-cEEEEe
Q 014125 340 DLQTGKWISGFQ------------AAADTVNGFSFHPFL-PMAASS 372 (430)
Q Consensus 340 d~~~~~~~~~~~------------~~~~~v~~~~~~~~~-~~l~s~ 372 (430)
+..+|+.+..+. .+....+.|++.|++ ++++||
T Consensus 202 ~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 202 DPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred cCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 666666544332 344567899999987 455665
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=91.57 E-value=4.3 Score=29.90 Aligned_cols=109 Identities=16% Similarity=0.170 Sum_probs=64.5
Q ss_pred EEEcCCCCceEEEecCCCeEEEEEcCCce--------eeEEeeccccCeEEEEEcc-----CCCEEEEEecCCCeEEEEe
Q 014125 228 IAFSPTHTGMLAIGSYSQTSAIYREDNME--------LLYVLHGQEGGVTHVQFSR-----DGNYLYTGGRKDPYILCWD 294 (430)
Q Consensus 228 ~~~~~~~~~~l~~~~~dg~v~~~d~~~~~--------~~~~~~~~~~~i~~~~~~~-----~~~~l~~~~~~d~~i~i~d 294 (430)
-.|.. ....|++++..|+|.|++..... .+..+. -...|++++-.+ ....|+.+ ....|..||
T Consensus 4 GkfDG-~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliG--t~t~llaYD 79 (136)
T PF14781_consen 4 GKFDG-VHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIG--TQTSLLAYD 79 (136)
T ss_pred EEeCC-CceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEe--ccceEEEEE
Confidence 34554 33478888889999999865332 333333 345677776544 23455555 478899999
Q ss_pred CCCCceEEEEeecccCCccceEEEEEcC----CCCEEEEEccCCcEEEEEcCCCCe
Q 014125 295 LRKAVQVVYKLYRSSEHTNQRILFDIEP----SGRHLGTGGQDGLVHIYDLQTGKW 346 (430)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~dg~i~vwd~~~~~~ 346 (430)
+.......++ .-...+.++.+-. ...++++| .+..|.-||..-.+.
T Consensus 80 V~~N~d~Fyk-----e~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e~ 129 (136)
T PF14781_consen 80 VENNSDLFYK-----EVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNEI 129 (136)
T ss_pred cccCchhhhh-----hCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcEE
Confidence 9987655433 2335566665532 23344444 456677777654443
|
|
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=91.31 E-value=3.5 Score=32.45 Aligned_cols=31 Identities=13% Similarity=0.100 Sum_probs=23.6
Q ss_pred cCeEEEEEccCC-----C-EEEEEecCCCeEEEEeCCC
Q 014125 266 GGVTHVQFSRDG-----N-YLYTGGRKDPYILCWDLRK 297 (430)
Q Consensus 266 ~~i~~~~~~~~~-----~-~l~~~~~~d~~i~i~d~~~ 297 (430)
..+.+++|||.| + .|++.. .++.|.+|....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLT-s~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLT-SNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEc-CCCeEEEEecCC
Confidence 378999999954 3 456666 899999997654
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=91.18 E-value=1.4 Score=24.71 Aligned_cols=41 Identities=17% Similarity=0.128 Sum_probs=28.0
Q ss_pred CCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEE
Q 014125 232 PTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQF 273 (430)
Q Consensus 232 ~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~ 273 (430)
|++..++++...+++|.++|..+++.+..+... .....++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence 345556666667899999999888887777652 33344544
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.96 E-value=4.4 Score=41.54 Aligned_cols=154 Identities=11% Similarity=0.084 Sum_probs=89.6
Q ss_pred EEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEE--------ccCCCEEEEEecCCCeEEEEeCCC
Q 014125 226 SAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQF--------SRDGNYLYTGGRKDPYILCWDLRK 297 (430)
Q Consensus 226 ~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~--------~~~~~~l~~~~~~d~~i~i~d~~~ 297 (430)
..+-+-|.=++.. .+.|..+.+|+..++.....+.+....|..+.. -|.=+++++.+ .--.|.++-+.-
T Consensus 82 ~~mGiFpeI~RaW--iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvva-T~~ei~ilgV~~ 158 (1311)
T KOG1900|consen 82 TDMGIFPEIGRAW--ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVA-TPVEIVILGVSF 158 (1311)
T ss_pred eeeccchhhcceE--EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEec-ccceEEEEEEEe
Confidence 3444444333333 345899999999987777777766666666553 23334555554 455666654432
Q ss_pred Cc----e-EEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEE--EEcCCC---C-e----------------eccc
Q 014125 298 AV----Q-VVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHI--YDLQTG---K-W----------------ISGF 350 (430)
Q Consensus 298 ~~----~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v--wd~~~~---~-~----------------~~~~ 350 (430)
.. . .....+........|+++....+|+.+++|- ||.|+= |....+ + + +..+
T Consensus 159 ~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~-dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~ 237 (1311)
T KOG1900|consen 159 DEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAGR-DGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSV 237 (1311)
T ss_pred ccccCcccccccceeeecCCceEEEEEeccCCcEEEeec-CCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcC
Confidence 11 1 0000111123356788888888888777664 553332 222211 0 0 1122
Q ss_pred c-cccCCeeEEEEcCCCcEEEEeeCCceeeecCC
Q 014125 351 Q-AAADTVNGFSFHPFLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 351 ~-~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~ 383 (430)
. .+.++|..++.....+.|.+-+..+.+.+|+.
T Consensus 238 ~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i 271 (1311)
T KOG1900|consen 238 PGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDI 271 (1311)
T ss_pred CCCCCCcceeeEeccccceeeeeccCceEEEEEc
Confidence 2 45679999999998889999888888888865
|
|
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=90.69 E-value=1.1 Score=25.12 Aligned_cols=40 Identities=23% Similarity=0.268 Sum_probs=27.0
Q ss_pred CCCCEEEEEc-cCCcEEEEEcCCCCeecccccccCCeeEEEE
Q 014125 322 PSGRHLGTGG-QDGLVHIYDLQTGKWISGFQAAADTVNGFSF 362 (430)
Q Consensus 322 ~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 362 (430)
|++++|+++. .++.|.++|..+++.+..+... .....+.|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence 5677666655 5788999999988887777653 23344444
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=90.08 E-value=6.1 Score=29.13 Aligned_cols=110 Identities=13% Similarity=0.108 Sum_probs=63.7
Q ss_pred CCCceEEEEeCCCcEEEEeccCCc--------eeeeeecccccccccceEEEE---ECC--CCcEEEEEcCCeEEEEEcC
Q 014125 136 PTSCVFASTTRDHPIHLWDATTGL--------LRCTYRAYDAVDEITAAFSVA---FNP--TGTKIFAGYNKSVRVFDVH 202 (430)
Q Consensus 136 ~~~~~l~~~~~dg~i~vwd~~~~~--------~~~~~~~~~~~~~~~~v~~~~---~~~--~~~~l~~~~d~~i~v~d~~ 202 (430)
.....|+.++.-|.|.|++..... .+..+.... .|++++ |.| ....|+.|....|..||+.
T Consensus 8 G~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~------~italaaG~l~~~~~~D~LliGt~t~llaYDV~ 81 (136)
T PF14781_consen 8 GVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQ------EITALAAGRLKPDDGRDCLLIGTQTSLLAYDVE 81 (136)
T ss_pred CCceeEEEEecCCEEEEECCCccccccccccCceeEEECCC------ceEEEEEEecCCCCCcCEEEEeccceEEEEEcc
Confidence 334478888888999999876432 223333222 555654 432 3467778999999999998
Q ss_pred CCCCcccccccccCCCCCCCcceEEEEEcCC--CCceEEEecCCCeEEEEEcCCceeeEE
Q 014125 203 RPGRDFEKYSTLKGNKEGQAGIMSAIAFSPT--HTGMLAIGSYSQTSAIYREDNMELLYV 260 (430)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~v~~~d~~~~~~~~~ 260 (430)
.....+. +.-...+.++.+..- ...-++..+.+..|.-||....+....
T Consensus 82 ~N~d~Fy---------ke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 82 NNSDLFY---------KEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWT 132 (136)
T ss_pred cCchhhh---------hhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEE
Confidence 7533211 122244666655321 122344444467777777765555443
|
|
| >KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.66 E-value=28 Score=36.12 Aligned_cols=29 Identities=10% Similarity=0.352 Sum_probs=25.4
Q ss_pred ceeEEEECcCCceEEEecCCCeEEEEeCC
Q 014125 62 FLKGIKWSPDGSSFLTSSEDKTLRIFSLP 90 (430)
Q Consensus 62 ~v~~~~~sp~~~~l~s~~~dg~v~iw~~~ 90 (430)
....++|+|...++|.++..|.|++|-..
T Consensus 37 ~~~~~afD~~q~llai~t~tg~i~~yg~~ 65 (993)
T KOG1983|consen 37 TPSALAFDPTQGLLAIGTRTGAIKIYGQP 65 (993)
T ss_pred CCcceeeccccceEEEEEecccEEEeccc
Confidence 45678999999999999999999999654
|
|
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=89.43 E-value=3.1 Score=39.93 Aligned_cols=38 Identities=18% Similarity=0.287 Sum_probs=28.2
Q ss_pred cceEEEEEcC----CCCEEEEEccCCcEEEEEcCCCCeeccc
Q 014125 313 NQRILFDIEP----SGRHLGTGGQDGLVHIYDLQTGKWISGF 350 (430)
Q Consensus 313 ~~v~~~~~~~----~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 350 (430)
.....+++++ +..+|++.+.|+.+|+||+.+++++...
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 3455566666 6789999999999999999999985543
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=88.98 E-value=12 Score=31.15 Aligned_cols=137 Identities=13% Similarity=0.022 Sum_probs=70.9
Q ss_pred EEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCC--eEEEEeCCCC--ceEEEEeecccCCccceEEEEEcC
Q 014125 247 SAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDP--YILCWDLRKA--VQVVYKLYRSSEHTNQRILFDIEP 322 (430)
Q Consensus 247 v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~--~i~i~d~~~~--~~~~~~~~~~~~~~~~v~~~~~~~ 322 (430)
-.+||+.+++...........+.+-.+-+||+.|.+|+..+| .+++++.... ................--+...-|
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 357888776543222222334445567899999999885453 4788876541 011111100011222223345567
Q ss_pred CCCEEEEEccCC-cEEEEEcCCC--Ceec--ccccc----cCC-eeEEEEcCCCcEEEEeeCCceeeecCC
Q 014125 323 SGRHLGTGGQDG-LVHIYDLQTG--KWIS--GFQAA----ADT-VNGFSFHPFLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 323 ~~~~l~~~~~dg-~i~vwd~~~~--~~~~--~~~~~----~~~-v~~~~~~~~~~~l~s~~~d~~~~vw~~ 383 (430)
||+.|+.|+.+. ...+|.-... .... .+..- ... =--+...|+|++++.+..+..+.=|..
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~i~d~~~ 198 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSIIYDYKT 198 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcEEEeCCC
Confidence 999999888874 3445554211 1111 11100 001 113455789999988876655554433
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2 | Back alignment and domain information |
|---|
Probab=88.79 E-value=15 Score=31.99 Aligned_cols=58 Identities=7% Similarity=0.039 Sum_probs=38.5
Q ss_pred CceEEEEeCCCcEEEEeccC--CceeeeeecccccccccceEEEEECCCCcEEEE--EcCCeEEEEEcCC
Q 014125 138 SCVFASTTRDHPIHLWDATT--GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA--GYNKSVRVFDVHR 203 (430)
Q Consensus 138 ~~~l~~~~~dg~i~vwd~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~d~~i~v~d~~~ 203 (430)
+++|+.|.++| +.+.++.. ++..+.+. ...|.++...+....|++ +....++++++..
T Consensus 13 ~~~lL~GTe~G-ly~~~~~~~~~~~~kl~~-------~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~ 74 (302)
T smart00036 13 GKWLLVGTEEG-LYVLNISDQPGTLEKLIG-------RRSVTQIWVLEENNVLLMISGKKPQLYSHPLSA 74 (302)
T ss_pred CcEEEEEeCCc-eEEEEcccCCCCeEEecC-------cCceEEEEEEhhhCEEEEEeCCcceEEEEEHHH
Confidence 36899999999 66666654 22332222 127888888888777763 3445599999853
|
Unpublished observations. |
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=88.62 E-value=14 Score=31.64 Aligned_cols=118 Identities=19% Similarity=0.287 Sum_probs=65.8
Q ss_pred CeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEe-----cCCCeEEEEeCCCCceEEEEeec-c-cCCccceEE
Q 014125 245 QTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGG-----RKDPYILCWDLRKAVQVVYKLYR-S-SEHTNQRIL 317 (430)
Q Consensus 245 g~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-----~~d~~i~i~d~~~~~~~~~~~~~-~-~~~~~~v~~ 317 (430)
..|.+||..+.+-...-.+-.+.|+.+.|..+.+.+++|. .....+..||+.+..-. .+.. . ..-.+++..
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~--~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS--SLGGGSSNSIPGPVTA 93 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee--ecCCcccccCCCcEEE
Confidence 4689999877665554445667899999985555554443 13567888998876321 2111 0 123467777
Q ss_pred EEEcC-CC-CEEEEEc-cCC--cEEEEEcCCCCeecc-cccccCCeeEEEEcC
Q 014125 318 FDIEP-SG-RHLGTGG-QDG--LVHIYDLQTGKWISG-FQAAADTVNGFSFHP 364 (430)
Q Consensus 318 ~~~~~-~~-~~l~~~~-~dg--~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~ 364 (430)
+.+.. ++ ++.+.|. .+| .|..||=.+...+.. .......|.++.+-|
T Consensus 94 ~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~~ 146 (281)
T PF12768_consen 94 LTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVLP 146 (281)
T ss_pred EEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEEe
Confidence 76633 33 3444443 333 466776555544443 222234555555433
|
|
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.55 E-value=4 Score=37.47 Aligned_cols=92 Identities=13% Similarity=0.099 Sum_probs=0.0
Q ss_pred ceeEEEECcCCceEEEecCCCeEEEEe---CCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCC
Q 014125 62 FLKGIKWSPDGSSFLTSSEDKTLRIFS---LPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS 138 (430)
Q Consensus 62 ~v~~~~~sp~~~~l~s~~~dg~v~iw~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 138 (430)
.|..+..++.|..+|-+|.+|.+.++= +.......+-+....-....-....+.....-.+...+|+|. |-..
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~----S~~D 180 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPS----SILD 180 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCC----ccCC
Q ss_pred ceEEEEeCCCcEEEEeccC
Q 014125 139 CVFASTTRDHPIHLWDATT 157 (430)
Q Consensus 139 ~~l~~~~~dg~i~vwd~~~ 157 (430)
..|..-+.|..|++|++..
T Consensus 181 ~hL~iL~sdnviRiy~lS~ 199 (741)
T KOG4460|consen 181 PHLVLLTSDNVIRIYSLSE 199 (741)
T ss_pred ceEEEEecCcEEEEEecCC
|
|
| >COG5290 IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=88.47 E-value=21 Score=35.00 Aligned_cols=110 Identities=12% Similarity=0.145 Sum_probs=60.4
Q ss_pred eEEEEEccCCCEEEEEecCCC-----eEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcC
Q 014125 268 VTHVQFSRDGNYLYTGGRKDP-----YILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQ 342 (430)
Q Consensus 268 i~~~~~~~~~~~l~~~~~~d~-----~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 342 (430)
-..+.|-|.|..+++.+ .|| .|.++.-+....-. .....+........+|+-....++.+ ..+.+.+|-..
T Consensus 249 e~~LSWkpqgS~~ati~-td~~~~S~~ViFfErNGLrHGe--f~lr~~~dEk~~~~~wn~~s~vlav~-~~n~~~lwttk 324 (1243)
T COG5290 249 EHQLSWKPQGSKYATIG-TDGCSTSESVIFFERNGLRHGE--FDLRVGCDEKAFLENWNLLSTVLAVA-EGNLLKLWTTK 324 (1243)
T ss_pred hhccccccCCceeeeec-cCCCCCcceEEEEccCCcccCC--ccccCCchhhhhhhhhhHHHHHHHHh-hcceEEEEEcc
Confidence 34589999999999987 555 35555433221110 00001233445556666554444443 45679999877
Q ss_pred CCCeecccccccCCeeEEEEcCCCc-EEEEeeCCceeeec
Q 014125 343 TGKWISGFQAAADTVNGFSFHPFLP-MAASSSGHRRFPVD 381 (430)
Q Consensus 343 ~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~~~vw 381 (430)
+..........-..+.-+.|+|... .|...+.....+|.
T Consensus 325 NyhWYLK~e~~ip~~s~vkwhpe~~nTl~f~d~~~I~~V~ 364 (1243)
T COG5290 325 NYHWYLKVERQIPGISYVKWHPEEKNTLLFRDGERILRVF 364 (1243)
T ss_pred ceEEEEEEeecCCCcceeeeccccCcEEEEecCCeEEEEE
Confidence 6554333333334567789999654 33333334444443
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=87.80 E-value=1.9 Score=23.69 Aligned_cols=29 Identities=24% Similarity=0.438 Sum_probs=19.2
Q ss_pred CCCceeEEEECcCCceEEEecC-C--CeEEEE
Q 014125 59 PNNFLKGIKWSPDGSSFLTSSE-D--KTLRIF 87 (430)
Q Consensus 59 h~~~v~~~~~sp~~~~l~s~~~-d--g~v~iw 87 (430)
....-....|||||+.|+-++. + |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3445778999999998876654 4 555555
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=87.80 E-value=17 Score=31.24 Aligned_cols=118 Identities=12% Similarity=0.222 Sum_probs=65.6
Q ss_pred CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEc-------CCeEEEEEcCCCCCcccccccccCCC-C
Q 014125 148 HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGY-------NKSVRVFDVHRPGRDFEKYSTLKGNK-E 219 (430)
Q Consensus 148 g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------d~~i~v~d~~~~~~~~~~~~~~~~~~-~ 219 (430)
..|++||..+.+....-.... +.|.++.|..+.+++++|. ...+..||+.... + ..+.... .
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~-----G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~--w---~~~~~~~s~ 85 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGIS-----GTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT--W---SSLGGGSSN 85 (281)
T ss_pred CEEEEEECCCCEeecCCCCce-----EEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe--e---eecCCcccc
Confidence 459999998876654433333 3899999987777777652 3457788886531 1 1111100 1
Q ss_pred CCCcceEEEEEcCCC-CceEEEec-CC--CeEEEEEcCCceeeEE-eeccccCeEEEEEcc
Q 014125 220 GQAGIMSAIAFSPTH-TGMLAIGS-YS--QTSAIYREDNMELLYV-LHGQEGGVTHVQFSR 275 (430)
Q Consensus 220 ~~~~~v~~~~~~~~~-~~~l~~~~-~d--g~v~~~d~~~~~~~~~-~~~~~~~i~~~~~~~ 275 (430)
.-.+++..+.+...+ .++.+.|. .+ ..|..||-.+...+.. .......|..+.+-|
T Consensus 86 ~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~~ 146 (281)
T PF12768_consen 86 SIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVLP 146 (281)
T ss_pred cCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEEe
Confidence 234678888775433 34554544 23 3466676555544433 222234455555433
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=87.70 E-value=13 Score=30.02 Aligned_cols=144 Identities=13% Similarity=0.181 Sum_probs=75.3
Q ss_pred eEEEEeCCCcEEEEeccCC--ceeeeeecccccccccceEEEEECCCCcEEEEE----cCC---eEEEE-EcCCC---CC
Q 014125 140 VFASTTRDHPIHLWDATTG--LLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG----YNK---SVRVF-DVHRP---GR 206 (430)
Q Consensus 140 ~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----~d~---~i~v~-d~~~~---~~ 206 (430)
.|+.+...+.|.+|++... +....+... +.|..+.++..|++|++= ... .+|+| +.+.. ..
T Consensus 30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv------~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~ 103 (215)
T PF14761_consen 30 ALFVAASGCKVEVYDLEQEECPLLCTFSTV------GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENS 103 (215)
T ss_pred eEEEEcCCCEEEEEEcccCCCceeEEEcch------hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCC
Confidence 4444466677999999833 344444433 388999999999999963 122 56765 22211 11
Q ss_pred ccc--ccc-------------cccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCcee-eE-----Eee---
Q 014125 207 DFE--KYS-------------TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL-LY-----VLH--- 262 (430)
Q Consensus 207 ~~~--~~~-------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~-~~-----~~~--- 262 (430)
+.. ... .+....-+-..++.+++.-|..+++++ |+ ++++.+|.+..... .. .+.
T Consensus 104 ~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlV-g~-~~~l~lf~l~~~~~~~~~~~~lDFe~~l 181 (215)
T PF14761_consen 104 PVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLV-GC-GNKLVLFTLKYQTIQSEKFSFLDFERSL 181 (215)
T ss_pred cEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEE-Ec-CCEEEEEEEEEEEEecccccEEechhhh
Confidence 110 000 000000122345777887785555544 43 56788887654332 11 111
Q ss_pred --cccc-CeEEEEEccCCCEEEEEecCCCeEEEEeC
Q 014125 263 --GQEG-GVTHVQFSRDGNYLYTGGRKDPYILCWDL 295 (430)
Q Consensus 263 --~~~~-~i~~~~~~~~~~~l~~~~~~d~~i~i~d~ 295 (430)
.|.+ ....+++. +.++|..+ +..++++.+
T Consensus 182 ~~~~~~~~p~~v~ic--~~yiA~~s--~~ev~Vlkl 213 (215)
T PF14761_consen 182 IDHIDNFKPTQVAIC--EGYIAVMS--DLEVLVLKL 213 (215)
T ss_pred hheecCceEEEEEEE--eeEEEEec--CCEEEEEEE
Confidence 1111 23445553 45676664 667777654
|
|
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=87.21 E-value=19 Score=31.17 Aligned_cols=187 Identities=13% Similarity=0.103 Sum_probs=85.7
Q ss_pred eEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceee
Q 014125 83 TLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRC 162 (430)
Q Consensus 83 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 162 (430)
.|.+||+.+++.......+..... ..+.+..+........ ..++-..++=+..+-|.|+|+.+++..+
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~-----------~~s~lndl~VD~~~~~-~~~~~aYItD~~~~glIV~dl~~~~s~R 102 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAP-----------PDSFLNDLVVDVRDGN-CDDGFAYITDSGGPGLIVYDLATGKSWR 102 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS------------TCGGEEEEEEECTTTT-S-SEEEEEEETTTCEEEEEETTTTEEEE
T ss_pred EEEEEECCCCcEEEEEECChHHcc-----------cccccceEEEEccCCC-CcceEEEEeCCCcCcEEEEEccCCcEEE
Confidence 688889888876544433321111 2233444444221000 0012223343444579999999987665
Q ss_pred eeecccccc--------------cccceEEEEECC---CCcEEEEEcCCeEEEEEcCC-----CCCcccc--cccccCCC
Q 014125 163 TYRAYDAVD--------------EITAAFSVAFNP---TGTKIFAGYNKSVRVFDVHR-----PGRDFEK--YSTLKGNK 218 (430)
Q Consensus 163 ~~~~~~~~~--------------~~~~v~~~~~~~---~~~~l~~~~d~~i~v~d~~~-----~~~~~~~--~~~~~~~~ 218 (430)
......... ....+..++.+| +++.|.-+.=..-++|.+.+ +...... ....+ .
T Consensus 103 v~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~--~ 180 (287)
T PF03022_consen 103 VLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQ--D 180 (287)
T ss_dssp EETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-E--E
T ss_pred EecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccce--e
Confidence 544322111 112345555554 55555532111222333321 1110000 00000 0
Q ss_pred CCC-CcceEEEEEcCCCCceEEEecCCCeEEEEEcCCc----e--eeEEeeccccCeEEEEEcc--CCCEEEEEe
Q 014125 219 EGQ-AGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM----E--LLYVLHGQEGGVTHVQFSR--DGNYLYTGG 284 (430)
Q Consensus 219 ~~~-~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~----~--~~~~~~~~~~~i~~~~~~~--~~~~l~~~~ 284 (430)
.+. ......+++++ .+.++++--..+.|..|+..+. . .+..-...-..+..+.+.+ +|.+.+.+.
T Consensus 181 lG~k~~~s~g~~~D~-~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 181 LGDKGSQSDGMAIDP-NGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSN 254 (287)
T ss_dssp EEE---SECEEEEET-TTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-
T ss_pred ccccCCCCceEEECC-CCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEEC
Confidence 111 13456788888 7778888888999999998762 1 1211111124678888888 665544443
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=86.98 E-value=17 Score=30.39 Aligned_cols=122 Identities=17% Similarity=0.236 Sum_probs=66.5
Q ss_pred EEEEcCCCCceEEEecC-C--CeEEEEEcCC----ceee---EEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCC
Q 014125 227 AIAFSPTHTGMLAIGSY-S--QTSAIYREDN----MELL---YVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR 296 (430)
Q Consensus 227 ~~~~~~~~~~~l~~~~~-d--g~v~~~d~~~----~~~~---~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~ 296 (430)
+-.+.| ++.++.+|+. + ..+++++..+ .... ..+. ....-.....-|||+.|+.||.......+|.-.
T Consensus 71 gg~~L~-dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~-~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~ 148 (243)
T PF07250_consen 71 GGAFLP-DGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQ-SGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPK 148 (243)
T ss_pred CcCCCC-CCCEEEeCCCCccccceEEEecCCCCCCCCceECccccc-CCCccccceECCCCCEEEEeCcCCCcccccCCc
Confidence 335667 5678887765 2 3477887544 1111 0111 223344555678999999999544455566543
Q ss_pred CCce-EE-EEeecc---cCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccccc
Q 014125 297 KAVQ-VV-YKLYRS---SEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQA 352 (430)
Q Consensus 297 ~~~~-~~-~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 352 (430)
.... .. ..+... ......--.+...|+|++++.+..+. .|||..+.+.++.+..
T Consensus 149 ~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~~lP~ 207 (243)
T PF07250_consen 149 GPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVRTLPD 207 (243)
T ss_pred cCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEeeCCC
Confidence 2111 11 111100 01111122456679999998887754 5678888877666654
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=86.90 E-value=15 Score=29.75 Aligned_cols=52 Identities=12% Similarity=0.139 Sum_probs=35.4
Q ss_pred CEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccC
Q 014125 278 NYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQD 333 (430)
Q Consensus 278 ~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 333 (430)
+.|+.+. ..+.|.+|++.+........+ ..-+.|..+.++..|.||++--.+
T Consensus 29 d~Lfva~-~g~~Vev~~l~~~~~~~~~~F---~Tv~~V~~l~y~~~GDYlvTlE~k 80 (215)
T PF14761_consen 29 DALFVAA-SGCKVEVYDLEQEECPLLCTF---STVGRVLQLVYSEAGDYLVTLEEK 80 (215)
T ss_pred ceEEEEc-CCCEEEEEEcccCCCceeEEE---cchhheeEEEeccccceEEEEEee
Confidence 4454445 678899999984333222221 234788999999999999987554
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=86.60 E-value=27 Score=32.38 Aligned_cols=109 Identities=12% Similarity=0.033 Sum_probs=59.8
Q ss_pred cCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEE-Eeecc--cCCccceEEEEEcCCC------CEEEEEc-----
Q 014125 266 GGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVY-KLYRS--SEHTNQRILFDIEPSG------RHLGTGG----- 331 (430)
Q Consensus 266 ~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~-~~~~~--~~~~~~v~~~~~~~~~------~~l~~~~----- 331 (430)
...+.|+|.|+|+.|++-- ..|.|++++..+...... .+... .........++++|+- .+|....
T Consensus 30 ~~Pw~maflPDG~llVtER-~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~ 108 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTER-ATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNG 108 (454)
T ss_pred CCceEEEEcCCCeEEEEEe-cCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCC
Confidence 4568999999997666543 369999998655432111 11100 1135678899999874 2333321
Q ss_pred -----cCCcEEEEEcCCC-------Ce-eccccc-ccCCeeEEEEcCCCcEEEEeeCC
Q 014125 332 -----QDGLVHIYDLQTG-------KW-ISGFQA-AADTVNGFSFHPFLPMAASSSGH 375 (430)
Q Consensus 332 -----~dg~i~vwd~~~~-------~~-~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d 375 (430)
....|.-|.+... +. +..+.. ....-..|+|.|+|.+.++.+..
T Consensus 109 ~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 109 DKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 1233544554321 11 111111 11234578899999877765543
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.34 E-value=40 Score=34.07 Aligned_cols=68 Identities=7% Similarity=-0.049 Sum_probs=42.6
Q ss_pred CCCceEEEEeCCCcEEEEeccCCceeeee-------ecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCC
Q 014125 136 PTSCVFASTTRDHPIHLWDATTGLLRCTY-------RAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRP 204 (430)
Q Consensus 136 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~ 204 (430)
..|+.+..|+.+|.+.+|.+......... ...... ...+|..+...+.-..+.+-.|+.|.++++...
T Consensus 24 ~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~-~kk~i~~l~~~~~~~~ll~l~dsqi~~~~l~~~ 98 (877)
T KOG2063|consen 24 AYGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEF-SKKPINKLLVCASLELLLILSDSQIAVHKLPEL 98 (877)
T ss_pred HhCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhh-ccchhHHHhhcchhcchheecCCcceeeecCcc
Confidence 35789999999999999998654211110 000000 122555555555556666778888999988763
|
|
| >PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides | Back alignment and domain information |
|---|
Probab=86.22 E-value=5.5 Score=26.89 Aligned_cols=50 Identities=18% Similarity=0.215 Sum_probs=34.3
Q ss_pred CeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCC
Q 014125 245 QTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRK 297 (430)
Q Consensus 245 g~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~ 297 (430)
+.|..||..+.+ .... --...+.|.++|++++|++++...+.|++|..+.
T Consensus 36 ~~Vvyyd~~~~~--~va~-g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 36 GNVVYYDGKEVK--VVAS-GFSFANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred ceEEEEeCCEeE--Eeec-cCCCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 456666654322 1222 2234578999999999999987889999998653
|
The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity |
| >PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins | Back alignment and domain information |
|---|
Probab=85.90 E-value=26 Score=32.37 Aligned_cols=29 Identities=10% Similarity=0.097 Sum_probs=22.3
Q ss_pred CeeEEEEcCCCcEEEEeeCCceeeecCCC
Q 014125 356 TVNGFSFHPFLPMAASSSGHRRFPVDDFE 384 (430)
Q Consensus 356 ~v~~~~~~~~~~~l~s~~~d~~~~vw~~~ 384 (430)
.|.+++..+..+.|++.+.++.|.+|+..
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~ 219 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLG 219 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE-
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEEe
Confidence 38888888888899999988888888653
|
RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A. |
| >PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins | Back alignment and domain information |
|---|
Probab=85.84 E-value=27 Score=32.27 Aligned_cols=32 Identities=28% Similarity=0.443 Sum_probs=25.1
Q ss_pred ccceEEEEEcCCCCEEEEEccCCcEEEEEcCC
Q 014125 312 TNQRILFDIEPSGRHLGTGGQDGLVHIYDLQT 343 (430)
Q Consensus 312 ~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 343 (430)
...|..+...+..+.+++.+.+|.|.+|++..
T Consensus 189 ~~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 189 RPKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp ---EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hhceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 34488899999889999999999999999974
|
RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A. |
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=85.62 E-value=27 Score=31.52 Aligned_cols=200 Identities=14% Similarity=0.153 Sum_probs=104.3
Q ss_pred eEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccCCCC
Q 014125 140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKE 219 (430)
Q Consensus 140 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~ 219 (430)
.++.+..+|.|.-.|..++..+.......... .+..-.+..+|+.++++.++.++.+|.+++...+.....
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~---~~~~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~------ 140 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVA---QLSGPILGSDGKIYVGSWDGKLYALDASTGTLVWSRNVG------ 140 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcce---eccCceEEeCCeEEEecccceEEEEECCCCcEEEEEecC------
Confidence 45556888889999999988665444332000 122222233788777778888888888654333221111
Q ss_pred CCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccc---cCeEEEEEccCCCEEEEEecC--CCeEEEEe
Q 014125 220 GQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE---GGVTHVQFSRDGNYLYTGGRK--DPYILCWD 294 (430)
Q Consensus 220 ~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~~--d~~i~i~d 294 (430)
.. ..+..-... ....+..++.++.+...|..+++......... ..+..--.. ....++.+. . ++.+.-.|
T Consensus 141 ~~-~~~~~~~v~--~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~-~~~~vy~~~-~~~~~~~~a~~ 215 (370)
T COG1520 141 GS-PYYASPPVV--GDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAI-ASGTVYVGS-DGYDGILYALN 215 (370)
T ss_pred CC-eEEecCcEE--cCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCcee-ecceEEEec-CCCcceEEEEE
Confidence 10 011111221 22245555578999999988888766654321 111111111 233455555 4 55677777
Q ss_pred CCCCceEEEEeecccCCccce-EEEEEcC----CCCEEEEEccCCcEEEEEcCCCCeecccccc
Q 014125 295 LRKAVQVVYKLYRSSEHTNQR-ILFDIEP----SGRHLGTGGQDGLVHIYDLQTGKWISGFQAA 353 (430)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~v-~~~~~~~----~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 353 (430)
..++................+ ....+.. .+.-+..++.++.+...|..+++.+..+...
T Consensus 216 ~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 216 AEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred ccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 776654432111101111101 0001100 0223456677888999999999988877754
|
|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=85.49 E-value=32 Score=32.29 Aligned_cols=108 Identities=13% Similarity=0.090 Sum_probs=54.1
Q ss_pred CCceEEEecCCC-----eEEEEEcCCceeeEEee-----ccccCeEEEEEccCCCEEEEEecCC----CeEEEEeCCCCc
Q 014125 234 HTGMLAIGSYSQ-----TSAIYREDNMELLYVLH-----GQEGGVTHVQFSRDGNYLYTGGRKD----PYILCWDLRKAV 299 (430)
Q Consensus 234 ~~~~l~~~~~dg-----~v~~~d~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~~d----~~i~i~d~~~~~ 299 (430)
+..+++.|+.++ .+..||+.+.+-...-. ........+. -+++.++.++ .+ ..+.+||+.+..
T Consensus 278 ~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~--~~gkiyviGG-~~g~~~~dv~~yD~~t~~ 354 (470)
T PLN02193 278 EENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEV--VQGKVWVVYG-FNGCEVDDVHYYDPVQDK 354 (470)
T ss_pred CCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEE--ECCcEEEEEC-CCCCccCceEEEECCCCE
Confidence 456777777543 46778877654321110 0111111222 2566666666 44 468899988764
Q ss_pred eEEEEeec-ccCCccceEEEEEcCCCCEEEEEccC--------------CcEEEEEcCCCCe
Q 014125 300 QVVYKLYR-SSEHTNQRILFDIEPSGRHLGTGGQD--------------GLVHIYDLQTGKW 346 (430)
Q Consensus 300 ~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d--------------g~i~vwd~~~~~~ 346 (430)
-....... .........++. -++++++.|+.. +.+.++|+.+.+.
T Consensus 355 W~~~~~~g~~P~~R~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W 414 (470)
T PLN02193 355 WTQVETFGVRPSERSVFASAA--VGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQW 414 (470)
T ss_pred EEEeccCCCCCCCcceeEEEE--ECCEEEEECCccCCccccccCccceeccEEEEEcCcCEE
Confidence 32111100 001111112222 246677777753 2478888887654
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=84.60 E-value=29 Score=30.93 Aligned_cols=24 Identities=8% Similarity=0.069 Sum_probs=14.9
Q ss_pred CceEEEEeCC-------CcEEEEeccCCcee
Q 014125 138 SCVFASTTRD-------HPIHLWDATTGLLR 161 (430)
Q Consensus 138 ~~~l~~~~~d-------g~i~vwd~~~~~~~ 161 (430)
+.+++.|+.+ ..+.+||+.+.+..
T Consensus 33 ~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~ 63 (341)
T PLN02153 33 DKLYSFGGELKPNEHIDKDLYVFDFNTHTWS 63 (341)
T ss_pred CEEEEECCccCCCCceeCcEEEEECCCCEEE
Confidence 4456666542 35788888776543
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=84.34 E-value=35 Score=31.67 Aligned_cols=75 Identities=11% Similarity=0.072 Sum_probs=41.1
Q ss_pred CCEEEEEccCCcEEEEEcCCCC--e----ecccccccCCeeEEEEcCCC-cEEEEeeCCceeeecCCCccccccCCCcEE
Q 014125 324 GRHLGTGGQDGLVHIYDLQTGK--W----ISGFQAAADTVNGFSFHPFL-PMAASSSGHRRFPVDDFEDLHLSGDENCVS 396 (430)
Q Consensus 324 ~~~l~~~~~dg~i~vwd~~~~~--~----~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~~~vw~~~~l~~~~~d~~i~ 396 (430)
|.+|+++-..+.|....++... . ...+.. .+.|+.+...||| .+.+..+..|.+.=-+.....+-.+-|.|-
T Consensus 369 g~llv~~L~~~~l~r~~l~~~~~~v~~~~~~~~~~-~~RiRdv~~~pDg~~iy~~td~~g~~~~~~~~~~~~~~~~~~~~ 447 (454)
T TIGR03606 369 NSLLIPSLKRGVIYRIKLDPDYSTVYGDAVPMFKT-NNRYRDVIASPDGNVLYVATDNFGNVQKDDGSVTNTLENPGSII 447 (454)
T ss_pred CCEEEEEcCCCeEEEEEecCCcceecceeEEeecC-CCeeEEEEECCCCCEEEEEEcCCCccccCCCCceeEecCCCeEE
Confidence 4556666566667777775432 1 122333 5689999999997 555555555555433333233333344444
Q ss_pred EEe
Q 014125 397 VWS 399 (430)
Q Consensus 397 ~w~ 399 (430)
++.
T Consensus 448 ~~~ 450 (454)
T TIGR03606 448 VFT 450 (454)
T ss_pred EEE
Confidence 443
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=83.83 E-value=31 Score=30.75 Aligned_cols=12 Identities=8% Similarity=0.155 Sum_probs=8.5
Q ss_pred CeEEEEEcCCce
Q 014125 245 QTSAIYREDNME 256 (430)
Q Consensus 245 g~v~~~d~~~~~ 256 (430)
..+.+||..+.+
T Consensus 168 ~~v~~YDp~t~~ 179 (346)
T TIGR03547 168 KNVLSYDPSTNQ 179 (346)
T ss_pred ceEEEEECCCCc
Confidence 468888887654
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >TIGR03032 conserved hypothetical protein TIGR03032 | Back alignment and domain information |
|---|
Probab=83.29 E-value=30 Score=30.04 Aligned_cols=83 Identities=11% Similarity=0.017 Sum_probs=51.4
Q ss_pred CCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccC--------------------Cc
Q 014125 276 DGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQD--------------------GL 335 (430)
Q Consensus 276 ~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------------------g~ 335 (430)
+|+..++-+ ..|.+.-+|..++...... .-.+....++|. |+++++|-+. .-
T Consensus 212 dgrLwvlds-gtGev~~vD~~~G~~e~Va-----~vpG~~rGL~f~--G~llvVgmSk~R~~~~f~glpl~~~l~~~~CG 283 (335)
T TIGR03032 212 QGKLWLLNS-GRGELGYVDPQAGKFQPVA-----FLPGFTRGLAFA--GDFAFVGLSKLRESRVFGGLPIEERLDALGCG 283 (335)
T ss_pred CCeEEEEEC-CCCEEEEEcCCCCcEEEEE-----ECCCCCccccee--CCEEEEEeccccCCCCcCCCchhhhhhhhccc
Confidence 455555555 7899999998766433222 123345667776 7777665421 23
Q ss_pred EEEEEcCCCCeeccccc--ccCCeeEEEEcCCC
Q 014125 336 VHIYDLQTGKWISGFQA--AADTVNGFSFHPFL 366 (430)
Q Consensus 336 i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~ 366 (430)
|.|.|+++|..+..++- --..+.+++.-|.-
T Consensus 284 v~vidl~tG~vv~~l~feg~v~EifdV~vLPg~ 316 (335)
T TIGR03032 284 VAVIDLNSGDVVHWLRFEGVIEEIYDVAVLPGV 316 (335)
T ss_pred EEEEECCCCCEEEEEEeCCceeEEEEEEEecCC
Confidence 77888888888776652 23356677777753
|
This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown. |
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=83.06 E-value=10 Score=36.45 Aligned_cols=66 Identities=12% Similarity=0.182 Sum_probs=41.2
Q ss_pred CCceEEEecCCCeEEEEEcCC----ceeeEE--eec--------------------cccCeEEEEEcc----CCCEEEEE
Q 014125 234 HTGMLAIGSYSQTSAIYREDN----MELLYV--LHG--------------------QEGGVTHVQFSR----DGNYLYTG 283 (430)
Q Consensus 234 ~~~~l~~~~~dg~v~~~d~~~----~~~~~~--~~~--------------------~~~~i~~~~~~~----~~~~l~~~ 283 (430)
+...++++..||.+....... +..... +.. .......+++++ +..+|++.
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 556888888999988887664 111111 110 113455666666 67789899
Q ss_pred ecCCCeEEEEeCCCCce
Q 014125 284 GRKDPYILCWDLRKAVQ 300 (430)
Q Consensus 284 ~~~d~~i~i~d~~~~~~ 300 (430)
+ .|+.+|+||+.+...
T Consensus 237 ~-~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 237 S-RDHTLRIWSLETGQC 252 (547)
T ss_dssp E-TTSEEEEEETTTTCE
T ss_pred e-CCCeEEEEECCCCeE
Confidence 9 999999999999866
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >smart00564 PQQ beta-propeller repeat | Back alignment and domain information |
|---|
Probab=82.93 E-value=2.9 Score=21.83 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=20.3
Q ss_pred EEEEEccCCcEEEEEcCCCCeecc
Q 014125 326 HLGTGGQDGLVHIYDLQTGKWISG 349 (430)
Q Consensus 326 ~l~~~~~dg~i~vwd~~~~~~~~~ 349 (430)
.++.++.+|.+..+|..+|+.+..
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEE
Confidence 677888899999999999987654
|
Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases. |
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=82.64 E-value=34 Score=30.21 Aligned_cols=64 Identities=16% Similarity=0.142 Sum_probs=32.8
Q ss_pred CCceEEEecC-----CCeEEEEEcCCceeeE--EeeccccCeEEEEEccCCCEEEEEecCCC----eEEEEeCCCCc
Q 014125 234 HTGMLAIGSY-----SQTSAIYREDNMELLY--VLHGQEGGVTHVQFSRDGNYLYTGGRKDP----YILCWDLRKAV 299 (430)
Q Consensus 234 ~~~~l~~~~~-----dg~v~~~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~~d~----~i~i~d~~~~~ 299 (430)
++.+++.|+. ...+..||+.+.+-.. .+... ......+..-+++..+.++ .++ .+.+||..+..
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~-~r~~~~~~~~~~~iYv~GG-~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGE-PRVQPVCVKLQNELYVFGG-GSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCC-CCCcceEEEECCEEEEEcC-CCCccccceEEEecCCCe
Confidence 4557777764 2468888987654322 12111 1111222233555555565 543 35678887653
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=82.59 E-value=39 Score=30.87 Aligned_cols=142 Identities=9% Similarity=0.027 Sum_probs=73.6
Q ss_pred eEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCce----
Q 014125 225 MSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQ---- 300 (430)
Q Consensus 225 v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~---- 300 (430)
...+...+ ++.+++++.....++-||-....-...-......++++.|.+++..++++ .+|.+..-+ ..+..
T Consensus 241 f~~v~~~~-dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g--~~G~l~~S~-d~G~~~~~~ 316 (398)
T PLN00033 241 FSTVNRSP-DGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT--RGGGLYVSK-GTGLTEEDF 316 (398)
T ss_pred eeeEEEcC-CCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe--CCceEEEec-CCCCccccc
Confidence 34445556 44455555433323333332110011112234578999999999877766 466654432 22211
Q ss_pred EEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccc---cccCCeeEEEEcCCCcEEEEee
Q 014125 301 VVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQ---AAADTVNGFSFHPFLPMAASSS 373 (430)
Q Consensus 301 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~s~~ 373 (430)
..... ........+..+.|.+++..+++| ..|.+.... +.|+.-...+ .-......+.|.++++.+++|.
T Consensus 317 ~f~~~-~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~ 389 (398)
T PLN00033 317 DFEEA-DIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGN 389 (398)
T ss_pred ceeec-ccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEeC
Confidence 11111 101122458889999887766555 667666553 4444322222 2234678999988777666653
|
|
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=82.32 E-value=62 Score=33.08 Aligned_cols=179 Identities=12% Similarity=0.173 Sum_probs=100.9
Q ss_pred cEEEEeccCCceeeeeecccccccccceEEEEECCCCcE--EEEE------------cCCeEEEEEcCCCCCcccccccc
Q 014125 149 PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTK--IFAG------------YNKSVRVFDVHRPGRDFEKYSTL 214 (430)
Q Consensus 149 ~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~------------~d~~i~v~d~~~~~~~~~~~~~~ 214 (430)
.|++.|..+++.+..+..... .....+..+.|+..... ++++ .+|.++.|++-..+..++....
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~n-e~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~- 931 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQN-EAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHK- 931 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCC-cchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeec-
Confidence 388888888887777665544 33335667777655433 3332 1245777776655443322211
Q ss_pred cCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEee--ccccCeEEEEEccCCCEEEEEecCCCeEEE
Q 014125 215 KGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH--GQEGGVTHVQFSRDGNYLYTGGRKDPYILC 292 (430)
Q Consensus 215 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i 292 (430)
..-.+++.+ ..|..+ ++++ +....+++||+...++++... .-...|+.+++ .+..++++. ..-.+.+
T Consensus 932 ----T~~~~~v~A--i~~f~~-~~La-gvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD-~qeSV~~ 1000 (1205)
T KOG1898|consen 932 ----TEIPGPVGA--ICPFQG-RVLA-GVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGD-IQESVHF 1000 (1205)
T ss_pred ----cCCCccceE--EeccCC-EEEE-ecccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEee-ccceEEE
Confidence 122334444 445344 4443 346789999998877655433 22456777777 566788888 4445555
Q ss_pred EeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcC
Q 014125 293 WDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQ 342 (430)
Q Consensus 293 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 342 (430)
+..+........+.. ......++++.+- |-..+|.|..=|.+.+-.+.
T Consensus 1001 ~~y~~~~n~l~~fad-D~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1001 VRYRREDNQLIVFAD-DPVPRHVTALELL-DYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred EEEecCCCeEEEEeC-CCccceeeEEEEe-cCCceeeccccCcEEEEECC
Confidence 544443333333322 3334456665544 34567777777877777654
|
|
| >TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171 | Back alignment and domain information |
|---|
Probab=81.69 E-value=12 Score=37.37 Aligned_cols=85 Identities=14% Similarity=0.061 Sum_probs=54.8
Q ss_pred eEEEecCCCeEEEEEcCCceeeEE-eeccccCeEEEEEccCCCEEEE-EecCCC-----eEEEEeCCCCceEEEEeeccc
Q 014125 237 MLAIGSYSQTSAIYREDNMELLYV-LHGQEGGVTHVQFSRDGNYLYT-GGRKDP-----YILCWDLRKAVQVVYKLYRSS 309 (430)
Q Consensus 237 ~l~~~~~dg~v~~~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~-~~~~d~-----~i~i~d~~~~~~~~~~~~~~~ 309 (430)
+.......+.+.+-|......... +. +..+|.+-+|||||+.|+- .+ .++ .|++-++++......++.
T Consensus 321 iAfv~~~~~~L~~~D~dG~n~~~ve~~-~~~~i~sP~~SPDG~~vAY~ts-~e~~~g~s~vYv~~L~t~~~~~vkl~--- 395 (912)
T TIGR02171 321 LAFRNDVTGNLAYIDYTKGASRAVEIE-DTISVYHPDISPDGKKVAFCTG-IEGLPGKSSVYVRNLNASGSGLVKLP--- 395 (912)
T ss_pred EEEEEcCCCeEEEEecCCCCceEEEec-CCCceecCcCCCCCCEEEEEEe-ecCCCCCceEEEEehhccCCCceEee---
Confidence 333333445888888876555544 43 6788999999999999988 44 444 588888887654433332
Q ss_pred CCccceEEEEEcCCCCE
Q 014125 310 EHTNQRILFDIEPSGRH 326 (430)
Q Consensus 310 ~~~~~v~~~~~~~~~~~ 326 (430)
-....|..-...++|..
T Consensus 396 ve~aaiprwrv~e~gdt 412 (912)
T TIGR02171 396 VENAAIPRWRVLENGDT 412 (912)
T ss_pred cccccccceEecCCCCe
Confidence 23445555666666654
|
This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown. |
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=81.28 E-value=14 Score=25.13 Aligned_cols=51 Identities=18% Similarity=0.101 Sum_probs=33.8
Q ss_pred EEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeE
Q 014125 239 AIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYI 290 (430)
Q Consensus 239 ~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i 290 (430)
+.+..+|.+..||..+++....+.+- .-.+.|++++|+.+++.+-.....|
T Consensus 31 le~~~~GRll~ydp~t~~~~vl~~~L-~fpNGVals~d~~~vlv~Et~~~Ri 81 (89)
T PF03088_consen 31 LEGRPTGRLLRYDPSTKETTVLLDGL-YFPNGVALSPDESFVLVAETGRYRI 81 (89)
T ss_dssp HHT---EEEEEEETTTTEEEEEEEEE-SSEEEEEE-TTSSEEEEEEGGGTEE
T ss_pred ecCCCCcCEEEEECCCCeEEEehhCC-CccCeEEEcCCCCEEEEEeccCceE
Confidence 33556789999999998876555543 4568999999999888775333333
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 430 | ||||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 2e-10 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 3e-10 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 3e-10 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 3e-10 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 3e-10 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 4e-10 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 4e-10 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 4e-10 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 4e-10 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 4e-10 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 4e-10 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 5e-10 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 5e-10 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 5e-10 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 6e-10 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 6e-10 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 2e-09 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 2e-09 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 8e-09 | ||
| 3fm0_A | 345 | Crystal Structure Of Wd40 Protein Ciao1 Length = 34 | 8e-08 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 2e-06 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 5e-06 | ||
| 3iz6_a | 380 | Localization Of The Small Subunit Ribosomal Protein | 1e-05 | ||
| 2pbi_B | 354 | The Multifunctional Nature Of Gbeta5RGS9 REVEALED F | 2e-05 | ||
| 2hes_X | 330 | Cytosolic Iron-sulphur Assembly Protein- 1 Length = | 2e-05 | ||
| 3ow8_A | 321 | Crystal Structure Of The Wd Repeat-Containing Prote | 1e-04 | ||
| 1gxr_A | 337 | Wd40 Region Of Human Groucho/tle1 Length = 337 | 1e-04 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 2e-04 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 6e-04 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 7e-04 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 8e-04 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 8e-04 |
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
| >pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380 | Back alignment and structure |
|
| >pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354 | Back alignment and structure |
|
| >pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330 | Back alignment and structure |
|
| >pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321 | Back alignment and structure |
|
| >pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 430 | |||
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 100.0 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 100.0 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 100.0 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 100.0 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 100.0 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 100.0 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 100.0 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.97 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.97 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.97 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.96 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.96 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.96 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.96 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.95 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.95 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.95 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.95 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.94 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.94 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.93 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.93 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.93 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.93 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.93 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.93 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.93 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.93 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.93 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.92 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.92 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.92 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.92 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.92 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.91 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.91 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.9 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.9 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.9 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.9 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.89 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.89 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.88 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.86 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.86 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.86 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.85 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.84 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.83 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.83 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.82 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.82 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.82 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.82 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.81 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.81 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.8 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.79 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.78 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.76 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.76 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.76 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.76 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.76 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.76 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.75 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.74 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.73 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.73 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.72 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.71 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.71 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.71 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.71 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.7 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.7 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.69 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.69 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.68 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.66 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.65 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.64 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.63 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.63 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.62 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.62 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.62 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.59 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.59 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.58 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.58 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.57 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.56 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.56 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.55 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.54 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.53 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.53 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.5 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.49 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.49 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.45 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.43 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.41 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.37 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.35 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.31 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.31 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.3 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.3 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.3 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.3 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.29 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.29 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.28 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.26 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.25 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.19 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.16 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.11 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.06 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.06 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 99.06 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 99.05 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 99.04 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 99.04 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.03 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.03 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.0 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.99 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.98 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.98 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.94 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.93 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.93 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.92 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.9 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.89 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.87 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.86 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.86 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.84 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.83 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.83 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.81 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.8 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.79 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.77 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.76 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.75 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.75 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 98.74 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.74 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.73 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.73 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.72 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.72 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.72 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.69 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.67 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.66 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.65 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 98.64 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 98.63 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.62 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 98.62 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.6 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.55 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 98.53 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 98.52 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.52 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.48 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 98.41 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.32 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 98.31 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.28 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.25 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 98.17 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 98.14 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 98.13 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 98.12 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 98.11 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 98.03 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 97.95 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.95 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 97.94 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.9 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 97.89 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.88 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 97.88 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 97.82 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 97.79 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.78 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 97.67 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.56 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.55 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 97.4 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 97.37 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.36 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 97.33 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 97.3 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 97.24 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 97.23 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 97.21 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.21 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.19 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 97.03 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 97.0 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 96.92 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 96.87 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 96.81 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 96.76 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 96.73 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 96.66 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 96.61 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 96.61 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 96.57 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 96.26 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 96.02 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 95.63 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 95.57 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 95.48 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 95.47 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 95.45 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 95.45 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 95.38 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 94.89 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 94.88 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 92.71 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 92.57 | |
| 3uc1_A | 327 | DNA gyrase subunit A; DNA binding protein, topoiso | 91.8 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 91.0 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 90.56 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 90.25 | |
| 3uc1_A | 327 | DNA gyrase subunit A; DNA binding protein, topoiso | 89.12 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 88.45 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 88.08 | |
| 1suu_A | 312 | DNA gyrase subunit A; topoisomerase,DNA gyrase, be | 87.77 | |
| 1zi0_A | 307 | DNA gyrase subunit A; beta pinwheel, topoisomerase | 87.37 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 85.44 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 84.92 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 84.86 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 81.97 |
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-50 Score=353.63 Aligned_cols=291 Identities=15% Similarity=0.174 Sum_probs=248.3
Q ss_pred cceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccc
Q 014125 51 NQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH 130 (430)
Q Consensus 51 ~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 130 (430)
+..+.+.+|.+.|++++|+|++++|++|+.||+|+|||+.++.... ....|...|.+++|
T Consensus 46 ~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~-----------------~~~~~~~~v~~~~~--- 105 (340)
T 1got_B 46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVH-----------------AIPLRSSWVMTCAY--- 105 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEE-----------------EEECSSSCEEEEEE---
T ss_pred hhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcce-----------------EeecCCccEEEEEE---
Confidence 4566889999999999999999999999999999999998654321 22345678999999
Q ss_pred cCccCCCCceEEEEeCCCcEEEEeccCCc----eeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCC
Q 014125 131 MSASDPTSCVFASTTRDHPIHLWDATTGL----LRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGR 206 (430)
Q Consensus 131 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~ 206 (430)
+|++++|++|+.|+.|++|++.++. ....+..|. ..|.++.|++++.+++++.|+.|++||+.+..
T Consensus 106 ----s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~-----~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~- 175 (340)
T 1got_B 106 ----APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHT-----GYLSCCRFLDDNQIVTSSGDTTCALWDIETGQ- 175 (340)
T ss_dssp ----CTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCS-----SCEEEEEEEETTEEEEEETTSCEEEEETTTTE-
T ss_pred ----CCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCC-----ccEEEEEECCCCcEEEEECCCcEEEEECCCCc-
Confidence 7789999999999999999998753 333444444 38999999999886667899999999997632
Q ss_pred cccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecC
Q 014125 207 DFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRK 286 (430)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 286 (430)
....+.+|...|.+++|+| ++.++++|+.|++|++||+++++....+.+|...|++++|+|++++|++++ .
T Consensus 176 -------~~~~~~~h~~~v~~~~~~~-~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s-~ 246 (340)
T 1got_B 176 -------QTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS-D 246 (340)
T ss_dssp -------EEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEE-T
T ss_pred -------EEEEEcCCCCceEEEEECC-CCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEc-C
Confidence 2223467889999999999 677999999999999999999999999999999999999999999999999 9
Q ss_pred CCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCC
Q 014125 287 DPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFL 366 (430)
Q Consensus 287 d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 366 (430)
||.|++||++...... . .....+...|.+++|+|+|++|++|+.||.|++||+.+++.+..+.+|.+.|.+++|+|++
T Consensus 247 d~~v~iwd~~~~~~~~-~-~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg 324 (340)
T 1got_B 247 DATCRLFDLRADQELM-T-YSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDG 324 (340)
T ss_dssp TSCEEEEETTTTEEEE-E-ECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS
T ss_pred CCcEEEEECCCCcEEE-E-EccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCC
Confidence 9999999999875432 2 2223445679999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeeCCceeeecC
Q 014125 367 PMAASSSGHRRFPVDD 382 (430)
Q Consensus 367 ~~l~s~~~d~~~~vw~ 382 (430)
.+|++++.|+.|+||+
T Consensus 325 ~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 325 MAVATGSWDSFLKIWN 340 (340)
T ss_dssp SCEEEEETTSCEEEEC
T ss_pred CEEEEEcCCccEEecC
Confidence 9999999777666664
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-50 Score=362.84 Aligned_cols=288 Identities=19% Similarity=0.272 Sum_probs=252.2
Q ss_pred eeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccC
Q 014125 53 FRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS 132 (430)
Q Consensus 53 ~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 132 (430)
...+.+|.++|++++|+|++++|++|+.||+|+|||+.+++... ....|...|.+++|
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~-----------------~l~~h~~~V~~v~~----- 158 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER-----------------TLKGHTDSVQDISF----- 158 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE-----------------EECCCSSCEEEEEE-----
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE-----------------EEeccCCcEEEEEE-----
Confidence 34678999999999999999999999999999999998765432 23346689999999
Q ss_pred ccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCccccc
Q 014125 133 ASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKY 211 (430)
Q Consensus 133 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~ 211 (430)
+|++.+|++|+.||+|++||+.+++.+..+..|.. .|.+++|+|++.+|+ ++.|+.|++||++.+.
T Consensus 159 --~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~-----~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~------ 225 (410)
T 1vyh_C 159 --DHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDH-----NVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY------ 225 (410)
T ss_dssp --CTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSS-----CEEEEEECSSSSEEEEEETTSEEEEEETTTCC------
T ss_pred --cCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCC-----CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc------
Confidence 67899999999999999999999988888877665 899999999999988 4599999999998742
Q ss_pred ccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccC---------------
Q 014125 212 STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRD--------------- 276 (430)
Q Consensus 212 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~--------------- 276 (430)
....+.+|...|.++.++| ++.++++|+.|++|++||+++++....+..|...|.+++|+|+
T Consensus 226 --~~~~~~~h~~~v~~~~~~~-~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~ 302 (410)
T 1vyh_C 226 --CVKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETK 302 (410)
T ss_dssp --EEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC--
T ss_pred --EEEEEeCCCccEEEEEECC-CCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhcccccc
Confidence 1122357888999999999 6779999999999999999999999999999999999999996
Q ss_pred -----CCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccc
Q 014125 277 -----GNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQ 351 (430)
Q Consensus 277 -----~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 351 (430)
+.+|++++ .|+.|++||++++.... .+ .+|...|.+++|+|+|++|++|+.||.|++||+.+++.+..+.
T Consensus 303 ~~~~~g~~l~sgs-~D~~i~iwd~~~~~~~~-~~---~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~ 377 (410)
T 1vyh_C 303 KSGKPGPFLLSGS-RDKTIKMWDVSTGMCLM-TL---VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN 377 (410)
T ss_dssp -----CCEEEEEE-TTSEEEEEETTTTEEEE-EE---ECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEE
T ss_pred ccCCCCCEEEEEe-CCCeEEEEECCCCceEE-EE---ECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEc
Confidence 66899999 99999999999875432 22 5788999999999999999999999999999999999999999
Q ss_pred cccCCeeEEEEcCCCcEEEEeeCCceeeecCC
Q 014125 352 AAADTVNGFSFHPFLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 352 ~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~ 383 (430)
+|...|++++|+|++++|++++.|+.|++|+.
T Consensus 378 ~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 378 AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp CCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 99999999999999999999997766666653
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-49 Score=343.64 Aligned_cols=290 Identities=21% Similarity=0.296 Sum_probs=247.6
Q ss_pred ceeecccCCCceeEEEECcC----CceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeee
Q 014125 52 QFRTSSIPNNFLKGIKWSPD----GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCW 127 (430)
Q Consensus 52 ~~~~~~~h~~~v~~~~~sp~----~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 127 (430)
.++.+.+|.+.|++++|+|+ +.+|+||+.|++|+||++..+.. ........|...|.+++|
T Consensus 24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~---------------~~~~~l~gh~~~v~~~~~ 88 (321)
T 3ow8_A 24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL---------------DLQWSLEGHQLGVVSVDI 88 (321)
T ss_dssp EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE---------------EEEEEECCCSSCEEEEEE
T ss_pred eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe---------------eeeeeeccCCCCEEEEEE
Confidence 34567899999999999985 66999999999999999865421 011123467789999999
Q ss_pred ccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCC
Q 014125 128 FPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGR 206 (430)
Q Consensus 128 ~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~ 206 (430)
++++.++++++.|++|++||+.+++.+..+..+.. .+.+++|+|++++|+++ .++.|++|+++....
T Consensus 89 -------~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~-----~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~ 156 (321)
T 3ow8_A 89 -------SHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPV-----DAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK 156 (321)
T ss_dssp -------CSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTT-----CCCCEEECTTSSEEEEECTTSEEEEEETTTCSE
T ss_pred -------CCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCc-----cEEEEEECCCCCEEEEEcCCCcEEEEEcCCCce
Confidence 67889999999999999999999998888876554 78899999999999966 899999999987432
Q ss_pred cccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecC
Q 014125 207 DFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRK 286 (430)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 286 (430)
. .....+...+.+++|+| ++.+|++|+.||.|++||+++++.+..+.+|..+|.+++|+|++++|++++ .
T Consensus 157 ~--------~~~~~~~~~v~~~~~sp-dg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s-~ 226 (321)
T 3ow8_A 157 E--------YSLDTRGKFILSIAYSP-DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTAS-D 226 (321)
T ss_dssp E--------EEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEEC-T
T ss_pred e--------EEecCCCceEEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEc-C
Confidence 1 12245667899999999 677999999999999999999999999999999999999999999999999 9
Q ss_pred CCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCC
Q 014125 287 DPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFL 366 (430)
Q Consensus 287 d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 366 (430)
|+.|++||+++..... . ..+|...|.+++|+|++++|++|+.|+.|++||+.+++++..+.+|.+.|.+++|+|++
T Consensus 227 dg~i~iwd~~~~~~~~-~---~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g 302 (321)
T 3ow8_A 227 DGYIKIYDVQHANLAG-T---LSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNG 302 (321)
T ss_dssp TSCEEEEETTTCCEEE-E---ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS
T ss_pred CCeEEEEECCCcceeE-E---EcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCC
Confidence 9999999999875432 2 25789999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeeCCceeeecC
Q 014125 367 PMAASSSGHRRFPVDD 382 (430)
Q Consensus 367 ~~l~s~~~d~~~~vw~ 382 (430)
.+|++++.|+.|++||
T Consensus 303 ~~l~s~~~d~~i~vwd 318 (321)
T 3ow8_A 303 SKIVSVGDDQEIHIYD 318 (321)
T ss_dssp SEEEEEETTCCEEEEE
T ss_pred CEEEEEeCCCeEEEEe
Confidence 9999998765555554
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-48 Score=345.48 Aligned_cols=292 Identities=17% Similarity=0.226 Sum_probs=246.1
Q ss_pred cceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccc
Q 014125 51 NQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH 130 (430)
Q Consensus 51 ~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 130 (430)
+..+.+.+|.+.|++++|+|++++||||+.||+|+|||..++.... ....+...|.+++|
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~-----------------~~~~~~~~v~~~~~--- 114 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH-----------------AVTMPCTWVMACAY--- 114 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE-----------------EEECSSSCCCEEEE---
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcce-----------------EEecCCCCEEEEEE---
Confidence 4567889999999999999999999999999999999987653221 22234567899999
Q ss_pred cCccCCCCceEEEEeCCCcEEEEeccCCc------eeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCC
Q 014125 131 MSASDPTSCVFASTTRDHPIHLWDATTGL------LRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHR 203 (430)
Q Consensus 131 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~ 203 (430)
+|++..|++++.|+.+++|++.... ....+..|. ..|.+++|+|++..|+ ++.|++|++||++.
T Consensus 115 ----sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~-----~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~ 185 (354)
T 2pbi_B 115 ----APSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHT-----NYLSACSFTNSDMQILTASGDGTCALWDVES 185 (354)
T ss_dssp ----CTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECS-----SCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred ----CCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccC-----CcEEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Confidence 7789999999999999999986542 233333333 4899999999998888 55999999999987
Q ss_pred CCCcccccccccCCCCCCCcceEEEEEcCC-CCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEE
Q 014125 204 PGRDFEKYSTLKGNKEGQAGIMSAIAFSPT-HTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYT 282 (430)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 282 (430)
+. ....+.+|...|.+++|+|. .+++|++|+.||+|++||+++++.+..+..|...|++++|+|++.+|++
T Consensus 186 ~~--------~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s 257 (354)
T 2pbi_B 186 GQ--------LLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFAS 257 (354)
T ss_dssp CC--------EEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred Ce--------EEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEE
Confidence 42 22233678889999999885 3579999999999999999999999999999999999999999999999
Q ss_pred EecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEE
Q 014125 283 GGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSF 362 (430)
Q Consensus 283 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 362 (430)
++ .|+.|++||++...... ......+...+.+++|+|+|++|++|+.|+.|++||+.+++.+..+.+|.+.|++++|
T Consensus 258 ~s-~D~~v~lwd~~~~~~~~--~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~ 334 (354)
T 2pbi_B 258 GS-DDATCRLYDLRADREVA--IYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRV 334 (354)
T ss_dssp EE-TTSCEEEEETTTTEEEE--EECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEE
T ss_pred Ee-CCCeEEEEECCCCcEEE--EEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEE
Confidence 99 99999999999875432 2222344557899999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEEEeeCCceeeecC
Q 014125 363 HPFLPMAASSSGHRRFPVDD 382 (430)
Q Consensus 363 ~~~~~~l~s~~~d~~~~vw~ 382 (430)
+|++++|++++.|+.++||+
T Consensus 335 spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 335 SPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp CTTSSCEEEEETTSEEEEEC
T ss_pred CCCCCEEEEEcCCCCEEecC
Confidence 99999999999877777763
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-47 Score=361.23 Aligned_cols=355 Identities=14% Similarity=0.197 Sum_probs=267.2
Q ss_pred ceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCc--cccccc-------ccccccC--------------
Q 014125 52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGIS--YDVNAC-------SLAKDQD-------------- 108 (430)
Q Consensus 52 ~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~--~~~~~~-------~~~~~~~-------------- 108 (430)
....+.+|.+.|++++|+|+|++||+|+.||+|+|||+.++... ..+..+ .+..+..
T Consensus 51 ~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~ 130 (611)
T 1nr0_A 51 DTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGH 130 (611)
T ss_dssp CCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEE
T ss_pred cCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeE
Confidence 34578899999999999999999999999999999998654321 111110 0000000
Q ss_pred ------cccceeeecCCCeeeeeeeccccCccCCCCc-eEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEE
Q 014125 109 ------SYEASLVVTEGESVYDFCWFPHMSASDPTSC-VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAF 181 (430)
Q Consensus 109 ------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~ 181 (430)
.........|...|.+++| +|++. .|++|+.|++|++||..+++....+..|.. .|.+++|
T Consensus 131 v~~wd~~~~~~~l~gh~~~v~~v~f-------~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~-----~V~~v~f 198 (611)
T 1nr0_A 131 VFLFDTGTSNGNLTGQARAMNSVDF-------KPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTK-----FVHSVRY 198 (611)
T ss_dssp EEETTTCCBCBCCCCCSSCEEEEEE-------CSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSS-----CEEEEEE
T ss_pred EEEeeCCCCcceecCCCCCceEEEE-------CCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccC-----ceEEEEE
Confidence 0011123457778899998 66775 699999999999999998888888877665 8999999
Q ss_pred CCCCcEEE-EEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeE-
Q 014125 182 NPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLY- 259 (430)
Q Consensus 182 ~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~- 259 (430)
+|++++|+ ++.|+.|++||+..+... ..+........+|...|.+++|+| ++.+|++++.|++|++||+++++.+.
T Consensus 199 spdg~~las~s~D~~i~lwd~~~g~~~-~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~s~s~D~~v~lWd~~~~~~~~~ 276 (611)
T 1nr0_A 199 NPDGSLFASTGGDGTIVLYNGVDGTKT-GVFEDDSLKNVAHSGSVFGLTWSP-DGTKIASASADKTIKIWNVATLKVEKT 276 (611)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCCEE-EECBCTTSSSCSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred CCCCCEEEEEECCCcEEEEECCCCcEe-eeeccccccccccCCCEEEEEECC-CCCEEEEEeCCCeEEEEeCCCCceeee
Confidence 99999999 559999999998764321 111011111237899999999999 67799999999999999998775443
Q ss_pred ------------------------------------------EeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCC
Q 014125 260 ------------------------------------------VLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRK 297 (430)
Q Consensus 260 ------------------------------------------~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~ 297 (430)
.+.+|...|++++|+|+|++|++++ .|+.|++||+.+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s-~D~~v~~Wd~~~ 355 (611)
T 1nr0_A 277 IPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSAD-AEGHINSWDIST 355 (611)
T ss_dssp EECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTT
T ss_pred ecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEe-CCCcEEEEECCC
Confidence 3346888999999999999999999 999999999876
Q ss_pred CceEEEE-----------------------------eec--------------------------c--------------
Q 014125 298 AVQVVYK-----------------------------LYR--------------------------S-------------- 308 (430)
Q Consensus 298 ~~~~~~~-----------------------------~~~--------------------------~-------------- 308 (430)
+...... +.. .
T Consensus 356 ~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~ 435 (611)
T 1nr0_A 356 GISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIA 435 (611)
T ss_dssp CCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEE
T ss_pred CceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEE
Confidence 5321100 000 0
Q ss_pred ---------cCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCe--ecccccccCCeeEEEEcCCCcEEEEeeCCce
Q 014125 309 ---------SEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKW--ISGFQAAADTVNGFSFHPFLPMAASSSGHRR 377 (430)
Q Consensus 309 ---------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~ 377 (430)
..+...+.+++|+|+|++|++|+.|+.|++||+.+++. +.. .+|...|++++|+|++++|++++.|+.
T Consensus 436 ~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~ 514 (611)
T 1nr0_A 436 IYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRK 514 (611)
T ss_dssp EEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCC
Confidence 01234577899999999999999999999999987653 233 679999999999999999999999999
Q ss_pred eeecCCC----------------------------ccccccCCCcEEEEeecccc-cc-cccCCC-CcceeeeeccC
Q 014125 378 FPVDDFE----------------------------DLHLSGDENCVSVWSFLYAS-MM-ENADGI-NGCEFNCQSEH 423 (430)
Q Consensus 378 ~~vw~~~----------------------------~l~~~~~d~~i~~w~~~~~~-~~-~~~~~~-~~~~~~~~~~~ 423 (430)
+++|+.. .|++++.|++|++|++..+. .. ..+.+| .+ .+.++...
T Consensus 515 v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~-~v~~v~fs 590 (611)
T 1nr0_A 515 VIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMS-SVNSVIWL 590 (611)
T ss_dssp EEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTS-CEEEEEEE
T ss_pred EEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCccc-CeeEEEEc
Confidence 9999432 27888999999999998765 33 566677 33 45554443
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-47 Score=330.88 Aligned_cols=284 Identities=20% Similarity=0.246 Sum_probs=242.2
Q ss_pred ceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecccc
Q 014125 52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (430)
Q Consensus 52 ~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (430)
..+++.+|.+.|++++|+|++++|++|+.||+|++||+.++... .....|..+|.+++|
T Consensus 5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~-----------------~~~~~~~~~v~~~~~---- 63 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEV-----------------RSIQVTETPVRAGKF---- 63 (304)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE-----------------EEEECCSSCEEEEEE----
T ss_pred eEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcee-----------------EEeeccCCcEEEEEE----
Confidence 45578899999999999999999999999999999999865332 123345678999999
Q ss_pred CccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCCcccc
Q 014125 132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFEK 210 (430)
Q Consensus 132 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~~~ 210 (430)
+|++++|++|+.|+.|++||+.+++.+..+..|.. .|.+++|+|++.+|++ +.|++|++||++...
T Consensus 64 ---~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~----- 130 (304)
T 2ynn_A 64 ---IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPD-----YIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW----- 130 (304)
T ss_dssp ---EGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSS-----CEEEEEECSSSSEEEEEETTSCEEEEEGGGTT-----
T ss_pred ---eCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCC-----cEEEEEEcCCCCEEEEECCCCeEEEEECCCCc-----
Confidence 66899999999999999999999999988887765 8999999999999985 599999999997632
Q ss_pred cccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEee-ccccCeEEEEEcc--CCCEEEEEecCC
Q 014125 211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH-GQEGGVTHVQFSR--DGNYLYTGGRKD 287 (430)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~-~~~~~i~~~~~~~--~~~~l~~~~~~d 287 (430)
.......+|...|.+++|+|.++.+|++|+.|++|++||+++......+. .|...+..++|+| ++.+|++++ .|
T Consensus 131 --~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s-~D 207 (304)
T 2ynn_A 131 --ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS-DD 207 (304)
T ss_dssp --EEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEE-TT
T ss_pred --chhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEc-CC
Confidence 12223468889999999999777899999999999999998877655554 4667899999987 678999999 99
Q ss_pred CeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCc
Q 014125 288 PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLP 367 (430)
Q Consensus 288 ~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 367 (430)
+.|++||+++.... ..+ .+|...|.+++|+|++.+|++|+.||.|++||+.+++.+..+..|...+.+++|+|++.
T Consensus 208 ~~i~iWd~~~~~~~-~~~---~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (304)
T 2ynn_A 208 LTIKIWDYQTKSCV-ATL---EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGR 283 (304)
T ss_dssp SEEEEEETTTTEEE-EEE---ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCG
T ss_pred CeEEEEeCCCCccc-eee---CCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCC
Confidence 99999999987533 233 57889999999999999999999999999999999999999999999999999999886
Q ss_pred --EEEEeeCCc
Q 014125 368 --MAASSSGHR 376 (430)
Q Consensus 368 --~l~s~~~d~ 376 (430)
++++++.||
T Consensus 284 ~~~~asg~~~g 294 (304)
T 2ynn_A 284 KNYIASGFDNG 294 (304)
T ss_dssp GGCEEEEETTE
T ss_pred ceEEEEecCCc
Confidence 577776443
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-46 Score=332.11 Aligned_cols=307 Identities=20% Similarity=0.278 Sum_probs=240.7
Q ss_pred cceeecccCCC-ceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecc
Q 014125 51 NQFRTSSIPNN-FLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFP 129 (430)
Q Consensus 51 ~~~~~~~~h~~-~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 129 (430)
..+..+.+|.+ .|++++|+|+|++||+|+.|++|+|||+.++... ........|...|.+++|
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~--------------~~~~~~~~h~~~v~~~~~-- 69 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWI--------------CKSVLSEGHQRTVRKVAW-- 69 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEE--------------EEEEECSSCSSCEEEEEE--
T ss_pred EEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcce--------------eeeeeccccCCcEEEEEE--
Confidence 45667889988 9999999999999999999999999998754210 011122457789999999
Q ss_pred ccCccCCCCceEEEEeCCCcEEEEeccCCc--eeeeeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCC
Q 014125 130 HMSASDPTSCVFASTTRDHPIHLWDATTGL--LRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGR 206 (430)
Q Consensus 130 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~ 206 (430)
+|++++|++|+.|+++++|++..+. .+..+..|.. .|.+++|+|++++|++ +.|+.|++||++....
T Consensus 70 -----sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~-----~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~ 139 (345)
T 3fm0_A 70 -----SPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHEN-----EVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDE 139 (345)
T ss_dssp -----CTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSS-----CEEEEEECTTSSEEEEEETTSCEEEEEECTTSC
T ss_pred -----CCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCC-----CceEEEEeCCCCEEEEEECCCeEEEEECCCCCC
Confidence 7789999999999999999998764 3455555554 8999999999999995 5899999999976432
Q ss_pred cccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCce--eeEEeeccccCeEEEEEccCCCEEEEEe
Q 014125 207 DFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME--LLYVLHGQEGGVTHVQFSRDGNYLYTGG 284 (430)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 284 (430)
. .......+|...|.+++|+| ++.+|++|+.|++|++||.++++ ....+.+|...|++++|+|++++|++++
T Consensus 140 ~-----~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s 213 (345)
T 3fm0_A 140 Y-----ECVSVLNSHTQDVKHVVWHP-SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCS 213 (345)
T ss_dssp E-----EEEEEECCCCSCEEEEEECS-SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred e-----EEEEEecCcCCCeEEEEECC-CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEe
Confidence 1 11122367888999999999 67799999999999999998775 4567889999999999999999999999
Q ss_pred cCCCeEEEEeCCCCce-----------EEEEee-cccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCe------
Q 014125 285 RKDPYILCWDLRKAVQ-----------VVYKLY-RSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKW------ 346 (430)
Q Consensus 285 ~~d~~i~i~d~~~~~~-----------~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~------ 346 (430)
.|+.|++||...... ...... ....|...|.+++|+|++..|++++.|+.|++|+...+..
T Consensus 214 -~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~ 292 (345)
T 3fm0_A 214 -DDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTF 292 (345)
T ss_dssp -TTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCE
T ss_pred -CCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeE
Confidence 999999999643211 001111 1123788999999999999999999999999999876532
Q ss_pred ---ecccccccCCeeEEEEcCCCc-EEEEeeCCceeeecCCCccccccCCCcEEEEeeccccccc
Q 014125 347 ---ISGFQAAADTVNGFSFHPFLP-MAASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYASMME 407 (430)
Q Consensus 347 ---~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~~~~ 407 (430)
.....+|...|++++|+|++. +|++++ .||.|++|++...+.+.
T Consensus 293 ~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s-----------------~Dg~v~~W~~~~~~~~~ 340 (345)
T 3fm0_A 293 SLTAHLHQAHSQDVNCVAWNPKEPGLLASCS-----------------DDGEVAFWKYQRPEGLH 340 (345)
T ss_dssp EEEEEETTSSSSCEEEEEECSSSTTEEEEEE-----------------TTSCEEEEEECC-----
T ss_pred EEEeeecccccCcEeEeEEeCCCceEEEEcC-----------------CCCcEEEEEecCCCCcc
Confidence 122357899999999999985 888887 57788888887666543
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-47 Score=341.04 Aligned_cols=298 Identities=15% Similarity=0.200 Sum_probs=237.7
Q ss_pred cceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccc
Q 014125 51 NQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH 130 (430)
Q Consensus 51 ~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 130 (430)
...+++.+|.+.|++++|+|++++|+||+.||+|+|||+.+++.. .....|...|.+++|
T Consensus 57 ~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~-----------------~~~~~h~~~v~~~~~--- 116 (380)
T 3iz6_a 57 VCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKT-----------------HAIKLHCPWVMECAF--- 116 (380)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEE-----------------EEEECCCTTCCCCEE---
T ss_pred EEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccc-----------------eEEecCCCCEEEEEE---
Confidence 345689999999999999999999999999999999999865332 123345678999999
Q ss_pred cCccCCCCceEEEEeCCCcEEEEeccCCc-------eeeeeecccccccccceEEEEECCCC-cEEE-EEcCCeEEEEEc
Q 014125 131 MSASDPTSCVFASTTRDHPIHLWDATTGL-------LRCTYRAYDAVDEITAAFSVAFNPTG-TKIF-AGYNKSVRVFDV 201 (430)
Q Consensus 131 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~-~~~d~~i~v~d~ 201 (430)
+|++++|++|+.|+.+++|++.+.. ....+..| ...+.++.|+|++ ..|+ ++.|++|++||+
T Consensus 117 ----s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh-----~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~ 187 (380)
T 3iz6_a 117 ----APNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGH-----KGYASSCQYVPDQETRLITGSGDQTCVLWDV 187 (380)
T ss_dssp ----CTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCC-----SSCCCCCBCCSSSSSCEEEECTTSCEEEECT
T ss_pred ----CCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCC-----CcceEEEEEecCCCCEEEEECCCCcEEEEEc
Confidence 7789999999999999999987542 12223333 3478899999975 4455 559999999999
Q ss_pred CCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcC-CceeeEEeeccccCeEEEEEccCCCEE
Q 014125 202 HRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED-NMELLYVLHGQEGGVTHVQFSRDGNYL 280 (430)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l 280 (430)
.++.... .+ ......+|...|.+++|+|.++++|++|+.|++|++||++ ..+.+..+.+|.+.|++++|+|++++|
T Consensus 188 ~~~~~~~-~~--~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l 264 (380)
T 3iz6_a 188 TTGQRIS-IF--GSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRF 264 (380)
T ss_dssp TTCCEEE-EE--CCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEE
T ss_pred CCCcEEE-Ee--ecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeE
Confidence 8743211 11 0112257888999999988778899999999999999998 457788899999999999999999999
Q ss_pred EEEecCCCeEEEEeCCCCceEEEEeecc---cCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccc----ccc
Q 014125 281 YTGGRKDPYILCWDLRKAVQVVYKLYRS---SEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGF----QAA 353 (430)
Q Consensus 281 ~~~~~~d~~i~i~d~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~----~~~ 353 (430)
++++ .|++|++||++++.......... ..+...+.+++|+|+|++|++|+.||.|++||+.+++.+..+ .+|
T Consensus 265 ~s~s-~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h 343 (380)
T 3iz6_a 265 GTGS-DDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSH 343 (380)
T ss_dssp EEEC-SSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSC
T ss_pred EEEc-CCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCC
Confidence 9999 99999999999875443221110 112335889999999999999999999999999999887766 679
Q ss_pred cCCeeEEEEcCCCcEEEEeeCCceeeec
Q 014125 354 ADTVNGFSFHPFLPMAASSSGHRRFPVD 381 (430)
Q Consensus 354 ~~~v~~~~~~~~~~~l~s~~~d~~~~vw 381 (430)
.+.|.+++|+|++.+|++|+.|+.+++|
T Consensus 344 ~~~v~~l~~s~dg~~l~sgs~D~~i~iW 371 (380)
T 3iz6_a 344 EGRISCLGLSSDGSALCTGSWDKNLKIW 371 (380)
T ss_dssp CCCCCEEEECSSSSEEEEECTTSCEEEE
T ss_pred CCceEEEEECCCCCEEEEeeCCCCEEEE
Confidence 9999999999999999999854433333
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-46 Score=330.43 Aligned_cols=300 Identities=13% Similarity=0.124 Sum_probs=228.1
Q ss_pred ccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCC
Q 014125 57 SIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP 136 (430)
Q Consensus 57 ~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 136 (430)
..|...|.+++|+|||++|++++ |+++++||........... ............+...|.+++| +|
T Consensus 27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~------~~~~~~~~~~~~~~~~v~~~~~-------s~ 92 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCA------APNEGFCSAGVQTEAGVADLTW-------VG 92 (344)
T ss_dssp SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGG------TTCGGGCSEEEEESSCEEEEEE-------ET
T ss_pred ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccc------cCCcceeeeeeccCCCEEEEEE-------eC
Confidence 35677899999999999999888 6788888742110000000 0111122233445568999999 44
Q ss_pred CCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCCccccccccc
Q 014125 137 TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFEKYSTLK 215 (430)
Q Consensus 137 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~ 215 (430)
+ ..|++|+.||+|++||+.+++......... ..|...|.+++|+|++++|++ +.|+.|++||++++ ...
T Consensus 93 d-~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~-~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~--------~~~ 162 (344)
T 4gqb_B 93 E-RGILVASDSGAVELWELDENETLIVSKFCK-YEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQ--------VVL 162 (344)
T ss_dssp T-TEEEEEETTSEEEEEEECTTSSCEEEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT--------EEE
T ss_pred C-CeEEEEECCCEEEEEeccCCCceeEeeccc-cCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC--------cEE
Confidence 5 468899999999999999987665544211 123448999999999999995 58999999999873 222
Q ss_pred CCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEee--ccccCeEEEEEccCC-CEEEEEecCCCeEEE
Q 014125 216 GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH--GQEGGVTHVQFSRDG-NYLYTGGRKDPYILC 292 (430)
Q Consensus 216 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~--~~~~~i~~~~~~~~~-~~l~~~~~~d~~i~i 292 (430)
..+.+|...|.+++|+|++..+|++++.|++|++||+++++....+. .+...+.+++|+|++ ++|++++ .||.|++
T Consensus 163 ~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~-~dg~v~~ 241 (344)
T 4gqb_B 163 SSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGD-ENGTVSL 241 (344)
T ss_dssp EEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEE-TTSEEEE
T ss_pred EEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEec-cCCcEEE
Confidence 33468999999999999777899999999999999999998887764 345679999999964 5677777 9999999
Q ss_pred EeCCCCceEEEEeecccCCccceEEEEEcCCC-CEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCc-EEE
Q 014125 293 WDLRKAVQVVYKLYRSSEHTNQRILFDIEPSG-RHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLP-MAA 370 (430)
Q Consensus 293 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~ 370 (430)
||++++.... . ..+|...|++++|+|++ ++|++|+.|++|+|||+.+++++ .+.+|.+.|++++|+|+++ +|+
T Consensus 242 wd~~~~~~~~-~---~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~lla 316 (344)
T 4gqb_B 242 VDTKSTSCVL-S---SAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLT 316 (344)
T ss_dssp EESCC--CCE-E---EECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEE
T ss_pred EECCCCcEEE-E---EcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEE
Confidence 9999875432 2 25789999999999998 58999999999999999988765 5688999999999999987 556
Q ss_pred EeeCCceeeecCCCccccccCCCcEEEEeeccc
Q 014125 371 SSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYA 403 (430)
Q Consensus 371 s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~ 403 (430)
+++ .|++|++|++...
T Consensus 317 s~s-----------------~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 317 TVG-----------------WDHQVVHHVVPTE 332 (344)
T ss_dssp EEE-----------------TTSCEEEEECCC-
T ss_pred EEc-----------------CCCeEEEEECCCC
Confidence 776 4666777766543
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-46 Score=332.39 Aligned_cols=298 Identities=12% Similarity=0.150 Sum_probs=225.6
Q ss_pred cccCCCceeEEEECcCCceEEEecC------CCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecc
Q 014125 56 SSIPNNFLKGIKWSPDGSSFLTSSE------DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFP 129 (430)
Q Consensus 56 ~~~h~~~v~~~~~sp~~~~l~s~~~------dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 129 (430)
...|...|++++|||||++||+|+. |+.|++|+..++.... ........|...|.+++|
T Consensus 38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~-------------~~~~~~~~~~~~V~~~~~-- 102 (357)
T 4g56_B 38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNE-------------SLCTAGVQTEAGVTDVAW-- 102 (357)
T ss_dssp --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CG-------------GGCSEEEECSSCEEEEEE--
T ss_pred cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcce-------------eEecccCCCCCCEEEEEE--
Confidence 3579999999999999999999998 7789999887653321 122234456778999999
Q ss_pred ccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCCcc
Q 014125 130 HMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDF 208 (430)
Q Consensus 130 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~ 208 (430)
+|++. +++++.||+|++||+.+++........ ...|...|.+++|+|++++|++ +.|+.|++||++++
T Consensus 103 -----s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~-~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~---- 171 (357)
T 4g56_B 103 -----VSEKG-ILVASDSGAVELWEILEKESLLVNKFA-KYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQK---- 171 (357)
T ss_dssp -----ETTTE-EEEEETTSCEEEC--------CCCCEE-ECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTT----
T ss_pred -----cCCCC-EEEEECCCEEEEeeccccceeEEEeec-cCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC----
Confidence 55664 567888999999999988654432211 1133448999999999999995 58999999999863
Q ss_pred cccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEee--ccccCeEEEEEccCC-CEEEEEec
Q 014125 209 EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH--GQEGGVTHVQFSRDG-NYLYTGGR 285 (430)
Q Consensus 209 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~--~~~~~i~~~~~~~~~-~~l~~~~~ 285 (430)
.....+.+|...|++++|+|++..++++++.|++|++||+++++....+. .|...+++++|+|++ .+|++++
T Consensus 172 ----~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~- 246 (357)
T 4g56_B 172 ----AVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGD- 246 (357)
T ss_dssp ----EEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEE-
T ss_pred ----cEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEee-
Confidence 22233467889999999999777799999999999999999987765543 466789999999985 5677777
Q ss_pred CCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCC-CEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcC
Q 014125 286 KDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSG-RHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHP 364 (430)
Q Consensus 286 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 364 (430)
.|+.|++||++++.... .+ ..|...|++++|+|++ ++|++|+.|++|+|||+++++++..+ +|.+.|++++|+|
T Consensus 247 ~d~~i~~wd~~~~~~~~-~~---~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP 321 (357)
T 4g56_B 247 ETGNVSLVNIKNPDSAQ-TS---AVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSP 321 (357)
T ss_dssp SSSCEEEEESSCGGGCE-EE---CCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECS
T ss_pred cccceeEEECCCCcEeE-EE---eccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeC
Confidence 99999999999875442 22 5788899999999987 68999999999999999999887655 6999999999999
Q ss_pred -CCcEEEEeeCCceeeecCCCccccccCCCcEEEEeecccccc
Q 014125 365 -FLPMAASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYASMM 406 (430)
Q Consensus 365 -~~~~l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~~~ 406 (430)
++.+|++++. |++|++|++......
T Consensus 322 ~d~~~l~s~s~-----------------Dg~v~iW~~~~~~~~ 347 (357)
T 4g56_B 322 LDHSKFTTVGW-----------------DHKVLHHHLPSEGRT 347 (357)
T ss_dssp SSTTEEEEEET-----------------TSCEEEEECC-----
T ss_pred CCCCEEEEEcC-----------------CCeEEEEECCCCCcc
Confidence 7889999884 666777766544433
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-45 Score=321.10 Aligned_cols=285 Identities=15% Similarity=0.235 Sum_probs=236.1
Q ss_pred cceeecccCCCceeEEEECcCC-ceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecc
Q 014125 51 NQFRTSSIPNNFLKGIKWSPDG-SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFP 129 (430)
Q Consensus 51 ~~~~~~~~h~~~v~~~~~sp~~-~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 129 (430)
.....+.+|.+.|++++|+|++ ++|++|+.|++|++|++....... .........|...|.+++|
T Consensus 8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~------------~~~~~~~~~h~~~v~~~~~-- 73 (319)
T 3frx_A 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKF------------GVPVRSFKGHSHIVQDCTL-- 73 (319)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEE------------EEEEEEEECCSSCEEEEEE--
T ss_pred EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccc------------cccceEEeCCcccEEEEEE--
Confidence 4556889999999999999965 899999999999999986432100 1112234568889999999
Q ss_pred ccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCCcc
Q 014125 130 HMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDF 208 (430)
Q Consensus 130 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~ 208 (430)
+|++.+|++|+.|++|++||+.+++....+..|.. .|.+++|+|++.++++ +.|+.|++||++..
T Consensus 74 -----s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~---- 139 (319)
T 3frx_A 74 -----TADGAYALSASWDKTLRLWDVATGETYQRFVGHKS-----DVMSVDIDKKASMIISGSRDKTIKVWTIKGQ---- 139 (319)
T ss_dssp -----CTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSS-----CEEEEEECTTSCEEEEEETTSCEEEEETTSC----
T ss_pred -----CCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCC-----cEEEEEEcCCCCEEEEEeCCCeEEEEECCCC----
Confidence 77899999999999999999999999888887765 8999999999999985 59999999999641
Q ss_pred cccccccCCCCCCCcceEEEEEcCCC-----CceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEE
Q 014125 209 EKYSTLKGNKEGQAGIMSAIAFSPTH-----TGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTG 283 (430)
Q Consensus 209 ~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 283 (430)
......+|...+.++.|.|.. +..+++++.|+.|++||+++.+....+.+|...|.+++|+|++++|+++
T Consensus 140 -----~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~ 214 (319)
T 3frx_A 140 -----CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASA 214 (319)
T ss_dssp -----EEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEE
T ss_pred -----eEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEE
Confidence 112235788899999999842 3489999999999999999999999999999999999999999999999
Q ss_pred ecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccc--------cccC
Q 014125 284 GRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQ--------AAAD 355 (430)
Q Consensus 284 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--------~~~~ 355 (430)
+ .||.|++||+++..... .+ .+...+.+++|+|++.+|++++.+ .+++|+++.+..+..+. .|..
T Consensus 215 ~-~dg~i~iwd~~~~~~~~-~~----~~~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (319)
T 3frx_A 215 G-KDGEIMLWNLAAKKAMY-TL----SAQDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEP 287 (319)
T ss_dssp E-TTCEEEEEETTTTEEEE-EE----ECCSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCC
T ss_pred e-CCCeEEEEECCCCcEEE-Ee----cCCCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCc
Confidence 9 99999999999875432 32 234679999999999999988765 59999998776554442 3566
Q ss_pred CeeEEEEcCCCcEEEEeeCC
Q 014125 356 TVNGFSFHPFLPMAASSSGH 375 (430)
Q Consensus 356 ~v~~~~~~~~~~~l~s~~~d 375 (430)
.+.+++|+|+|++|++++.|
T Consensus 288 ~v~~~~~spdg~~l~sg~~D 307 (319)
T 3frx_A 288 HAVSLAWSADGQTLFAGYTD 307 (319)
T ss_dssp CEEEEEECTTSSEEEEEETT
T ss_pred ceeEEEECCCCCEEEEeecC
Confidence 79999999999999999853
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-45 Score=319.23 Aligned_cols=280 Identities=23% Similarity=0.378 Sum_probs=235.7
Q ss_pred cceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccc
Q 014125 51 NQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH 130 (430)
Q Consensus 51 ~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 130 (430)
.....+.+|.+.|++++|+|++++|++|+.||.|++|++.+++.. .....|...|.+++|
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~-----------------~~~~~h~~~v~~~~~--- 73 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-----------------KTISGHKLGISDVAW--- 73 (312)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE-----------------EEECCCSSCEEEEEE---
T ss_pred eeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccc-----------------hhhccCCCceEEEEE---
Confidence 445678899999999999999999999999999999999765432 123346678999999
Q ss_pred cCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCCccc
Q 014125 131 MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFE 209 (430)
Q Consensus 131 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~~ 209 (430)
+|++++|++++.||.|++||+.+++.+..+..+.. .|.+++|+|++.++++ +.|+.|++||++...
T Consensus 74 ----~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~---- 140 (312)
T 4ery_A 74 ----SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN-----YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK---- 140 (312)
T ss_dssp ----CTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSS-----CEEEEEECSSSSEEEEEETTSCEEEEETTTCC----
T ss_pred ----cCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCC-----CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCE----
Confidence 77899999999999999999999999888887665 8999999999999995 589999999998632
Q ss_pred ccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEee-ccccCeEEEEEccCCCEEEEEecCCC
Q 014125 210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH-GQEGGVTHVQFSRDGNYLYTGGRKDP 288 (430)
Q Consensus 210 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~d~ 288 (430)
.......|..+|.+++|+| ++.+|++++.||.|++||+++++.+..+. .+...+..++|+|++++|++++ .|+
T Consensus 141 ----~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~ 214 (312)
T 4ery_A 141 ----CLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDN 214 (312)
T ss_dssp ----EEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEE-TTT
T ss_pred ----EEEEecCCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEc-CCC
Confidence 1222356778899999999 67799999999999999999988776654 4567899999999999999999 999
Q ss_pred eEEEEeCCCCceEEEEeecccCCccc---eEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCC
Q 014125 289 YILCWDLRKAVQVVYKLYRSSEHTNQ---RILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPF 365 (430)
Q Consensus 289 ~i~i~d~~~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 365 (430)
.|++||+++..... .+ ..|... +......+++.+|++|+.||.|++||+.+++.+..+.+|...|.+++|+|+
T Consensus 215 ~i~iwd~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~ 290 (312)
T 4ery_A 215 TLKLWDYSKGKCLK-TY---TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 290 (312)
T ss_dssp EEEEEETTTTEEEE-EE---CSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSS
T ss_pred eEEEEECCCCcEEE-EE---EecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCc
Confidence 99999999875432 22 233322 233333467899999999999999999999999999999999999999999
Q ss_pred CcEEEEee
Q 014125 366 LPMAASSS 373 (430)
Q Consensus 366 ~~~l~s~~ 373 (430)
+++|++++
T Consensus 291 ~~~l~s~~ 298 (312)
T 4ery_A 291 ENIIASAA 298 (312)
T ss_dssp SSEEEEEE
T ss_pred CCceEEEE
Confidence 99999987
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-45 Score=322.74 Aligned_cols=291 Identities=19% Similarity=0.332 Sum_probs=233.1
Q ss_pred cceeecccCCCceeEEEE-----Cc-CCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeee
Q 014125 51 NQFRTSSIPNNFLKGIKW-----SP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYD 124 (430)
Q Consensus 51 ~~~~~~~~h~~~v~~~~~-----sp-~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 124 (430)
.....+.+|.+.|++++| +| ++++|++|+.|++|++||+......... .........|...|.+
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~----------~~~~~~l~~h~~~V~~ 81 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYF----------GIPHKALTGHNHFVSD 81 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBS----------EEEEEEECCCSSCEEE
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccccc----------ccccchhccCCCceEE
Confidence 456688999999999999 77 9999999999999999998754321100 1112234567889999
Q ss_pred eeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCC
Q 014125 125 FCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHR 203 (430)
Q Consensus 125 ~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~ 203 (430)
++| +|++.++++++.|++|++||+.+++....+..|.. .|.+++|+|++++|+ ++.|+.|++||+..
T Consensus 82 ~~~-------~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~-----~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~ 149 (343)
T 2xzm_R 82 LAL-------SQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQS-----EVYSVAFSPDNRQILSAGAEREIKLWNILG 149 (343)
T ss_dssp EEE-------CSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCS-----CEEEEEECSSTTEEEEEETTSCEEEEESSS
T ss_pred EEE-------CCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCC-----cEEEEEECCCCCEEEEEcCCCEEEEEeccC
Confidence 999 67899999999999999999999999888887765 899999999999988 45899999999963
Q ss_pred CCCcccccccccCCCCCCCcceEEEEEcCCCC---------ceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEc
Q 014125 204 PGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHT---------GMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFS 274 (430)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---------~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~ 274 (430)
.. .........|...+.+++|+|++. .++++++.|+.|++||. ..+....+.+|...|.+++|+
T Consensus 150 ~~------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s 222 (343)
T 2xzm_R 150 EC------KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSIS 222 (343)
T ss_dssp CE------EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEEC
T ss_pred Cc------eeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEEC
Confidence 21 011112346788899999999542 68999999999999994 566777888999999999999
Q ss_pred cCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeec--ccc-
Q 014125 275 RDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWIS--GFQ- 351 (430)
Q Consensus 275 ~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~--~~~- 351 (430)
|+|++|++++ .||.|++||++......... .+...|.+++|+|++.+++++ .|+.|++||+.+++... .+.
T Consensus 223 ~~g~~l~sgs-~dg~v~iwd~~~~~~~~~~~----~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~ 296 (343)
T 2xzm_R 223 PNGKYIATGG-KDKKLLIWDILNLTYPQREF----DAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEA 296 (343)
T ss_dssp TTSSEEEEEE-TTCEEEEEESSCCSSCSEEE----ECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCC
T ss_pred CCCCEEEEEc-CCCeEEEEECCCCcccceee----cCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeec
Confidence 9999999999 99999999995543322222 234569999999999887755 57789999998776543 332
Q ss_pred ----------cccCCeeEEEEcCCCcEEEEeeCCc
Q 014125 352 ----------AAADTVNGFSFHPFLPMAASSSGHR 376 (430)
Q Consensus 352 ----------~~~~~v~~~~~~~~~~~l~s~~~d~ 376 (430)
+|...|.+++|+|++++|++|+.||
T Consensus 297 ~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg 331 (343)
T 2xzm_R 297 EPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDG 331 (343)
T ss_dssp CSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTS
T ss_pred CcchhhhhhcCCCCceEEEEECCCCCeEEEecCCc
Confidence 6778899999999999999998543
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-44 Score=345.89 Aligned_cols=306 Identities=15% Similarity=0.174 Sum_probs=253.2
Q ss_pred ccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCC
Q 014125 57 SIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP 136 (430)
Q Consensus 57 ~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 136 (430)
..+++.+.+++|+|||++||+++ ++.|++|++.++... .....|...|++++| +|
T Consensus 15 ~~~~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~-----------------~~~~~h~~~v~~~~~-------sp 69 (611)
T 1nr0_A 15 RTARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDT-----------------EIYTEHSHQTTVAKT-------SP 69 (611)
T ss_dssp CCCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCC-----------------EEECCCSSCEEEEEE-------CT
T ss_pred CcccCceeEEeeCCCCCEEEeCC-CCEEEEecCCCcccC-----------------eEecCCCCceEEEEE-------CC
Confidence 34577789999999999999998 469999999755322 233457789999999 78
Q ss_pred CCceEEEEeCCCcEEEEeccCCce--eeeeecccccccccceEEEEECCCCcEEEEE-cC----CeEEEEEcCCCCCccc
Q 014125 137 TSCVFASTTRDHPIHLWDATTGLL--RCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN----KSVRVFDVHRPGRDFE 209 (430)
Q Consensus 137 ~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d----~~i~v~d~~~~~~~~~ 209 (430)
+|++||+|+.||+|++||+.+++. ...+..+.. .|.+++|+|+++.|+++ .+ +.|++||...
T Consensus 70 dg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~-----~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~------ 138 (611)
T 1nr0_A 70 SGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSG-----PVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT------ 138 (611)
T ss_dssp TSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSS-----CEEEEEECTTSCEEEEEECCSSCSEEEEETTTCC------
T ss_pred CCcEEEEEeCCCCEEEeECCCCcceeeEeecccCC-----ceEEEEECCCCCEEEEEECCCCceeEEEEeeCCC------
Confidence 999999999999999999976543 334554444 89999999999999854 33 3688887532
Q ss_pred ccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCe
Q 014125 210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPY 289 (430)
Q Consensus 210 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~ 289 (430)
....+.+|...|.+++|+|++...|++|+.|++|++||..+++....+.+|...|.+++|+|+|++|++++ .|+.
T Consensus 139 ----~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s-~D~~ 213 (611)
T 1nr0_A 139 ----SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTG-GDGT 213 (611)
T ss_dssp ----BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSC
T ss_pred ----CcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEE-CCCc
Confidence 12234789999999999996666799999999999999999999999999999999999999999999999 9999
Q ss_pred EEEEeCCCCceEEEEeec----ccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeec-----------------
Q 014125 290 ILCWDLRKAVQVVYKLYR----SSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWIS----------------- 348 (430)
Q Consensus 290 i~i~d~~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~----------------- 348 (430)
|++||+.++.... .+.. ..+|...|.+++|+|+|++|++++.|++|++||+.+++.+.
T Consensus 214 i~lwd~~~g~~~~-~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (611)
T 1nr0_A 214 IVLYNGVDGTKTG-VFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW 292 (611)
T ss_dssp EEEEETTTCCEEE-ECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE
T ss_pred EEEEECCCCcEee-eeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE
Confidence 9999998875432 2211 12689999999999999999999999999999998876543
Q ss_pred --------------------------ccccccCCeeEEEEcCCCcEEEEeeCCceeeecCCC------------------
Q 014125 349 --------------------------GFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFE------------------ 384 (430)
Q Consensus 349 --------------------------~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~------------------ 384 (430)
.+.+|...|.+++|+|++++|++++.|+.+++||..
T Consensus 293 ~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~ 372 (611)
T 1nr0_A 293 TKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITG 372 (611)
T ss_dssp CSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEE
T ss_pred cCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEE
Confidence 334788899999999999999999999999999743
Q ss_pred -------ccccccCCCcEEEEeecccc
Q 014125 385 -------DLHLSGDENCVSVWSFLYAS 404 (430)
Q Consensus 385 -------~l~~~~~d~~i~~w~~~~~~ 404 (430)
.+++++.|+.+++|+.....
T Consensus 373 ~~~s~~~~l~s~s~d~~v~~w~~~~~~ 399 (611)
T 1nr0_A 373 IKTTSKGDLFTVSWDDHLKVVPAGGSG 399 (611)
T ss_dssp EEECTTSCEEEEETTTEEEEECSSSSS
T ss_pred EEECCCCcEEEEEcCCceEEeecCCcc
Confidence 26778899999999987544
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-44 Score=318.66 Aligned_cols=298 Identities=17% Similarity=0.266 Sum_probs=226.3
Q ss_pred cceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeec-CCCeeeeeeecc
Q 014125 51 NQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVT-EGESVYDFCWFP 129 (430)
Q Consensus 51 ~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~ 129 (430)
+..+.+.+|.+.|++++|+|+ +||+|+.|++|++||+..+.. .....+... |...|.+++|
T Consensus 5 ~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~--------------~~~~~~~~~~h~~~v~~v~~-- 66 (330)
T 2hes_X 5 NLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDF--------------TLIDVLDETAHKKAIRSVAW-- 66 (330)
T ss_dssp EEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCC--------------EEEEEECTTCCCSCEEEEEE--
T ss_pred ccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCe--------------EEEEEEecCCccCCEEEEEE--
Confidence 345678899999999999997 999999999999999975421 001111122 7789999999
Q ss_pred ccCccCCCCceEEEEeCCCcEEEEeccCC-------ceeeeeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEc
Q 014125 130 HMSASDPTSCVFASTTRDHPIHLWDATTG-------LLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDV 201 (430)
Q Consensus 130 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~ 201 (430)
+|++++|++|+.|++|++||+... +....+..|.. .|.+++|+|++++|++ +.|+.|++||+
T Consensus 67 -----sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~-----~V~~v~~sp~g~~las~s~D~~v~iwd~ 136 (330)
T 2hes_X 67 -----RPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHEN-----EVKGVAWSNDGYYLATCSRDKSVWIWET 136 (330)
T ss_dssp -----CTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC---------CEEEEEECTTSCEEEEEETTSCEEEEEC
T ss_pred -----CCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCC-----cEEEEEECCCCCEEEEEeCCCEEEEEec
Confidence 678999999999999999998532 33444554443 8999999999999995 58999999999
Q ss_pred CCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCc--eeeEEeeccccCeEEEEEccC--C
Q 014125 202 HRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM--ELLYVLHGQEGGVTHVQFSRD--G 277 (430)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~--~~~~~~~~~~~~i~~~~~~~~--~ 277 (430)
+..+..... ...+.+|...|.+++|+| ++.+|++|+.|++|++||..++ +++..+.+|.+.|.+++|+|+ +
T Consensus 137 ~~~~~~~~~----~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 211 (330)
T 2hes_X 137 DESGEEYEC----ISVLQEHSQDVKHVIWHP-SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGV 211 (330)
T ss_dssp CTTCCCCEE----EEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSS
T ss_pred cCCCCCeEE----EEEeccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCe
Confidence 643322221 122367888999999999 6779999999999999998766 677888999999999999998 6
Q ss_pred CEEEEEecCCCeEEEEeCCCCc----eEEEEeecc-cCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCC--eec-c
Q 014125 278 NYLYTGGRKDPYILCWDLRKAV----QVVYKLYRS-SEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGK--WIS-G 349 (430)
Q Consensus 278 ~~l~~~~~~d~~i~i~d~~~~~----~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~-~ 349 (430)
..|++++ .|++|++||++... ......... ..|...|.+++|++++ +|++++.||.|++||..+++ .+. .
T Consensus 212 ~~l~s~s-~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~ 289 (330)
T 2hes_X 212 FRLCSGS-DDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKR 289 (330)
T ss_dssp CEEEEEE-TTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEE
T ss_pred eEEEEEe-CCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecc
Confidence 7899998 99999999986531 111111112 2388899999999765 89999999999999998774 232 3
Q ss_pred cccccC-CeeEEEEcC--CCcEEEEeeCCceeeecCC
Q 014125 350 FQAAAD-TVNGFSFHP--FLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 350 ~~~~~~-~v~~~~~~~--~~~~l~s~~~d~~~~vw~~ 383 (430)
+.+|.. .|.+++|+| ++++|++++.|+.|++|+.
T Consensus 290 ~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~ 326 (330)
T 2hes_X 290 ALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSL 326 (330)
T ss_dssp SCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC
T ss_pred ccccccceEEEEEEecCCCceEEEEecCCCcEEEEEe
Confidence 356877 899999999 6889999986555555543
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-44 Score=325.82 Aligned_cols=301 Identities=19% Similarity=0.301 Sum_probs=234.4
Q ss_pred cCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCccccccccccc-ccCcccceeeecCCCeeeeeeeccccCccCC
Q 014125 58 IPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAK-DQDSYEASLVVTEGESVYDFCWFPHMSASDP 136 (430)
Q Consensus 58 ~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 136 (430)
+|.+.|++++|+|||++||+|+ ++.++||++.++.....+....... ............+...|.+++| +|
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~-------s~ 133 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCF-------SP 133 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEE-------CT
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEE-------CC
Confidence 6999999999999999999987 6799999998876644433221100 0000001111123345899999 77
Q ss_pred CCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCCccccccccc
Q 014125 137 TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFEKYSTLK 215 (430)
Q Consensus 137 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~ 215 (430)
++++|++|+.|+.|++||+.+++.+..+..|.. .|.+++|+|++.+|++ +.|+.|++||+++.... ..
T Consensus 134 dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~-----~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~----~~-- 202 (393)
T 1erj_A 134 DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQ-----DIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCS----LT-- 202 (393)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEEEEECCCSS-----CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE----EE--
T ss_pred CCCEEEEEcCCCeEEEEECCCCcEEEEEccCCC-----CEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeE----EE--
Confidence 999999999999999999999998888877765 8999999999999984 59999999999864211 11
Q ss_pred CCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEe-------eccccCeEEEEEccCCCEEEEEecCCC
Q 014125 216 GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVL-------HGQEGGVTHVQFSRDGNYLYTGGRKDP 288 (430)
Q Consensus 216 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~~~~d~ 288 (430)
..+...+.+++|+|.++.+|++|+.|+.|++||+++++.+..+ .+|...|.+++|+|++++|++++ .|+
T Consensus 203 ---~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s-~d~ 278 (393)
T 1erj_A 203 ---LSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS-LDR 278 (393)
T ss_dssp ---EECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEE-TTS
T ss_pred ---EEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEe-CCC
Confidence 1234569999999977789999999999999999998877666 56889999999999999999999 999
Q ss_pred eEEEEeCCCCceEE--------EEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEE
Q 014125 289 YILCWDLRKAVQVV--------YKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGF 360 (430)
Q Consensus 289 ~i~i~d~~~~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~ 360 (430)
.|++||+++..... .......+|...|.+++|+|++.+|++|+.|+.|++||+.+++++..+.+|...|.++
T Consensus 279 ~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v 358 (393)
T 1erj_A 279 SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISV 358 (393)
T ss_dssp EEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred EEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEE
Confidence 99999998643210 0111225788899999999999999999999999999999999999999999999999
Q ss_pred EEcC------CCcEEEEeeCCceeeec
Q 014125 361 SFHP------FLPMAASSSGHRRFPVD 381 (430)
Q Consensus 361 ~~~~------~~~~l~s~~~d~~~~vw 381 (430)
+|+| ++++|++++.|+.++||
T Consensus 359 ~~~~~~~~~p~~~~l~sgs~Dg~i~iW 385 (393)
T 1erj_A 359 AVANGSSLGPEYNVFATGSGDCKARIW 385 (393)
T ss_dssp EECSSCTTCTTCEEEEEEETTSEEEEE
T ss_pred EecCCcCcCCCCCEEEEECCCCcEEEC
Confidence 9986 67888888754333333
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-43 Score=310.98 Aligned_cols=298 Identities=19% Similarity=0.290 Sum_probs=242.3
Q ss_pred ceeecccCCCceeEEEECcC-CceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccc
Q 014125 52 QFRTSSIPNNFLKGIKWSPD-GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH 130 (430)
Q Consensus 52 ~~~~~~~h~~~v~~~~~sp~-~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 130 (430)
+..++.||.+.|++|+|+|+ +++|||||.||+|+|||+.+.+.... ........|...|.+++|
T Consensus 30 l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~------------~~~~~l~~h~~~V~~~~~--- 94 (340)
T 4aow_A 30 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYG------------IPQRALRGHSHFVSDVVI--- 94 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSE------------EEEEEECCCSSCEEEEEE---
T ss_pred EEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccc------------eeeEEEeCCCCCEEEEEE---
Confidence 34578999999999999997 68999999999999999986543211 112234457789999999
Q ss_pred cCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCCccc
Q 014125 131 MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFE 209 (430)
Q Consensus 131 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~~ 209 (430)
+|++++|++++.|+.|++|+............+.. .+..+.+++++.++++ +.|+.+++||+....
T Consensus 95 ----s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~---- 161 (340)
T 4aow_A 95 ----SSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTK-----DVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVC---- 161 (340)
T ss_dssp ----CTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSS-----CEEEEEECTTSSCEEEEETTSCEEEECTTSCE----
T ss_pred ----CCCCCEEEEEcccccceEEeecccceeeeecCCCC-----ceeEEEEeecCccceeecCCCeEEEEEeCCCc----
Confidence 77899999999999999999999887777766554 7788899999998884 589999999986532
Q ss_pred ccccccCCCCCCCcceEEEEEcCCC-CceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCC
Q 014125 210 KYSTLKGNKEGQAGIMSAIAFSPTH-TGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDP 288 (430)
Q Consensus 210 ~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~ 288 (430)
.......+|...+..++|+++. ..++++++.|+.|++||+++++....+.+|.+.|++++|+|++++|++++ .|+
T Consensus 162 ---~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s-~Dg 237 (340)
T 4aow_A 162 ---KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGG-KDG 237 (340)
T ss_dssp ---EEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTC
T ss_pred ---eEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEe-CCC
Confidence 1222346778889999999864 34678899999999999999999999999999999999999999999999 999
Q ss_pred eEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccc---------ccccCCeeE
Q 014125 289 YILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGF---------QAAADTVNG 359 (430)
Q Consensus 289 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~---------~~~~~~v~~ 359 (430)
.|++||+++..... .+ .+...+.++.|+|++.+ ++++.|+.|++||++++..+..+ .+|...|++
T Consensus 238 ~i~iwd~~~~~~~~-~~----~~~~~v~~~~~~~~~~~-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 311 (340)
T 4aow_A 238 QAMLWDLNEGKHLY-TL----DGGDIINALCFSPNRYW-LCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTS 311 (340)
T ss_dssp EEEEEETTTTEEEE-EE----ECSSCEEEEEECSSSSE-EEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEE
T ss_pred eEEEEEeccCceee-ee----cCCceEEeeecCCCCce-eeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEE
Confidence 99999999875432 22 24567999999998765 55667999999999987665544 368889999
Q ss_pred EEEcCCCcEEEEeeCCceeeecCCCccccccCCCcEEEEeecccc
Q 014125 360 FSFHPFLPMAASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYAS 404 (430)
Q Consensus 360 ~~~~~~~~~l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~ 404 (430)
++|+|++++|++|+ .||.|++|++..|.
T Consensus 312 l~~s~dg~~l~sgs-----------------~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 312 LAWSADGQTLFAGY-----------------TDNLVRVWQVTIGT 339 (340)
T ss_dssp EEECTTSSEEEEEE-----------------TTSCEEEEEEEC--
T ss_pred EEECCCCCEEEEEe-----------------CCCEEEEEeCCCcC
Confidence 99999999999998 46777777777654
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-43 Score=336.75 Aligned_cols=299 Identities=21% Similarity=0.404 Sum_probs=252.5
Q ss_pred ceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecccc
Q 014125 52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (430)
Q Consensus 52 ~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (430)
....+.+|...|++++|+|++++|++++.|+.|++|+.... .......|...|.+++|
T Consensus 254 ~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~------------------~~~~~~~h~~~v~~~~~---- 311 (577)
T 2ymu_A 254 LLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQ------------------LLQTLTGHSSSVWGVAF---- 311 (577)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC------------------EEEEECCCSSCEEEEEE----
T ss_pred EEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc------------------EEEEEecCCCCeEEEEE----
Confidence 45578899999999999999999999999999999997532 11233456789999999
Q ss_pred CccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccc
Q 014125 132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEK 210 (430)
Q Consensus 132 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~ 210 (430)
+|++..|++++.||.|++||+... ....+..+.. .+.+++|+|++++++++ .|+.|++|+... .
T Consensus 312 ---~~~~~~l~t~~~d~~i~~w~~~~~-~~~~~~~~~~-----~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~--~---- 376 (577)
T 2ymu_A 312 ---SPDGQTIASASDDKTVKLWNRNGQ-HLQTLTGHSS-----SVWGVAFSPDGQTIASASDDKTVKLWNRNG--Q---- 376 (577)
T ss_dssp ---CTTSSEEEEEETTSCEEEEETTSC-EEEEECCCSS-----CEEEEEECTTSSEEEEEETTSEEEEEETTC--C----
T ss_pred ---CCCCCEEEEEeCCCeEEEEeCCCC-eeEEEeCCCC-----CEEEEEECCCCCEEEEEeCCCEEEEEcCCC--C----
Confidence 778999999999999999998654 3445554443 89999999999999955 899999999643 1
Q ss_pred cccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeE
Q 014125 211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYI 290 (430)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i 290 (430)
......+|...|++++|+| ++.+|++++.|+.|++||. +++.+..+.+|...|++++|+|++++|++++ .|+.|
T Consensus 377 ---~~~~~~~~~~~v~~~~~s~-dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-~d~~v 450 (577)
T 2ymu_A 377 ---LLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASAS-DDKTV 450 (577)
T ss_dssp ---EEEEEECCSSCEEEEEECT-TSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEE-TTSEE
T ss_pred ---EEEEecCCCCCeEEEEECC-CCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEc-CCCEE
Confidence 1122356788999999999 6679999999999999996 5677888899999999999999999999999 99999
Q ss_pred EEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEE
Q 014125 291 LCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAA 370 (430)
Q Consensus 291 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 370 (430)
++||.... ....+ .+|...|.+++|+|++++|++++.|+.|++||. +++.+..+.+|...|++++|+|++++|+
T Consensus 451 ~~w~~~~~--~~~~~---~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~ 524 (577)
T 2ymu_A 451 KLWNRNGQ--LLQTL---TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIA 524 (577)
T ss_dssp EEEETTSC--EEEEE---ECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEE
T ss_pred EEEECCCC--EEEEE---cCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEE
Confidence 99997543 22222 578899999999999999999999999999995 6888999999999999999999999999
Q ss_pred EeeCCceeeecCCC------------------------ccccccCCCcEEEEe
Q 014125 371 SSSGHRRFPVDDFE------------------------DLHLSGDENCVSVWS 399 (430)
Q Consensus 371 s~~~d~~~~vw~~~------------------------~l~~~~~d~~i~~w~ 399 (430)
+++.|+.|++||.. .|++++.|++|++||
T Consensus 525 s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 525 SASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEECcCEEEEEeCCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 99999999999643 277788888888886
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-43 Score=334.51 Aligned_cols=322 Identities=21% Similarity=0.382 Sum_probs=270.3
Q ss_pred ceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecccc
Q 014125 52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (430)
Q Consensus 52 ~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (430)
....+.+|...|++++|+|++++|++++.|+.|++|+.... .......|...|.+++|
T Consensus 213 ~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~------------------~~~~~~~~~~~v~~v~~---- 270 (577)
T 2ymu_A 213 LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ------------------LLQTLTGHSSSVNGVAF---- 270 (577)
T ss_dssp EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC------------------EEEEECCCSSCEEEEEE----
T ss_pred EEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCC------------------EEEEEecCCCCEEEEEE----
Confidence 34567899999999999999999999999999999996532 11233456678999999
Q ss_pred CccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCCcccc
Q 014125 132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFEK 210 (430)
Q Consensus 132 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~~~ 210 (430)
+|++..|++++.|+.|++|+.. ++....+..+.. .|.+++|+|++..+++ +.|+.|++||+....
T Consensus 271 ---~~d~~~l~~~~~d~~i~~w~~~-~~~~~~~~~h~~-----~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~----- 336 (577)
T 2ymu_A 271 ---RPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSS-----SVWGVAFSPDGQTIASASDDKTVKLWNRNGQH----- 336 (577)
T ss_dssp ---CTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSS-----CEEEEEECTTSSEEEEEETTSCEEEEETTSCE-----
T ss_pred ---cCCCCEEEEEeCCCEEEEEeCC-CcEEEEEecCCC-----CeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe-----
Confidence 7789999999999999999964 556666665554 8999999999999984 589999999976421
Q ss_pred cccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeE
Q 014125 211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYI 290 (430)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i 290 (430)
.....+|...+.+++|+| ++..+++++.|+.|++||. +++.+..+..|...|.+++|+|++++|++++ .|+.|
T Consensus 337 ----~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~d~~v 409 (577)
T 2ymu_A 337 ----LQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASAS-DDKTV 409 (577)
T ss_dssp ----EEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEE-TTSEE
T ss_pred ----eEEEeCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEe-CCCEE
Confidence 112356788899999999 6779999999999999996 5677888889999999999999999999999 99999
Q ss_pred EEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEE
Q 014125 291 LCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAA 370 (430)
Q Consensus 291 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 370 (430)
++||.... ....+ ..|...|++++|+|++++|++++.|+.|++||. +++.+..+.+|...|.+++|+|++++|+
T Consensus 410 ~~~~~~~~--~~~~~---~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~la 483 (577)
T 2ymu_A 410 KLWNRNGQ--LLQTL---TGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIA 483 (577)
T ss_dssp EEECTTCC--EEEEE---ECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEE
T ss_pred EEEeCCCC--EEEEe---cCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEE
Confidence 99996543 22222 578899999999999999999999999999996 5778888999999999999999999999
Q ss_pred EeeCCceeeecCCC------------------------ccccccCCCcEEEEeecccccccccCCCCcceeeeeccCc
Q 014125 371 SSSGHRRFPVDDFE------------------------DLHLSGDENCVSVWSFLYASMMENADGINGCEFNCQSEHE 424 (430)
Q Consensus 371 s~~~d~~~~vw~~~------------------------~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (430)
+++.|+.|++|+.+ .|++++.|+.|++||. .++.+..+.+|.+ .+.++...+
T Consensus 484 s~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~-~v~~~~fs~ 559 (577)
T 2ymu_A 484 SASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSS-SVWGVAFSP 559 (577)
T ss_dssp EEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSS-CEEEEEECT
T ss_pred EEeCCCEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCC-CEEEEEEcC
Confidence 99999999999532 3889999999999995 5677888888877 455555544
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-43 Score=318.67 Aligned_cols=262 Identities=18% Similarity=0.304 Sum_probs=232.5
Q ss_pred eeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-E
Q 014125 113 SLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-G 191 (430)
Q Consensus 113 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~ 191 (430)
.....|..+|++++| +|++.+|++|+.||+|++||+.+++....+..|.. .|.+++|+|++.+|++ +
T Consensus 102 ~~l~gh~~~V~~~~~-------~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~-----~V~~v~~~~~~~~l~sgs 169 (410)
T 1vyh_C 102 YALSGHRSPVTRVIF-------HPVFSVMVSASEDATIKVWDYETGDFERTLKGHTD-----SVQDISFDHSGKLLASCS 169 (410)
T ss_dssp CEEECCSSCEEEEEE-------CSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSS-----CEEEEEECTTSSEEEEEE
T ss_pred EeecccCCcEEEEEE-------cCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCC-----cEEEEEEcCCCCEEEEEe
Confidence 345678899999999 67899999999999999999999999888887765 8999999999999984 5
Q ss_pred cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEE
Q 014125 192 YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHV 271 (430)
Q Consensus 192 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~ 271 (430)
.|+.|++||+... .....+.+|...|.+++|+| ++.+|++|+.|++|++||++++..+..+.+|...|.++
T Consensus 170 ~D~~i~iwd~~~~--------~~~~~~~~h~~~V~~v~~~p-~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~ 240 (410)
T 1vyh_C 170 ADMTIKLWDFQGF--------ECIRTMHGHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV 240 (410)
T ss_dssp TTSCCCEEETTSS--------CEEECCCCCSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred CCCeEEEEeCCCC--------ceeEEEcCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEE
Confidence 9999999999763 22233468889999999999 67799999999999999999999999999999999999
Q ss_pred EEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCC--------------------CCEEEEEc
Q 014125 272 QFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPS--------------------GRHLGTGG 331 (430)
Q Consensus 272 ~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------------------~~~l~~~~ 331 (430)
+|+|++.+|++++ .|+.|++||+++..... .+ ..|...|.+++|+|+ |.+|++|+
T Consensus 241 ~~~~~g~~l~s~s-~D~~v~vwd~~~~~~~~-~~---~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs 315 (410)
T 1vyh_C 241 RPNQDGTLIASCS-NDQTVRVWVVATKECKA-EL---REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS 315 (410)
T ss_dssp EECTTSSEEEEEE-TTSCEEEEETTTCCEEE-EE---CCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE
T ss_pred EECCCCCEEEEEc-CCCeEEEEECCCCceee-Ee---cCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEe
Confidence 9999999999999 99999999999875432 22 578899999999996 67899999
Q ss_pred cCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCCCc-------------------------c
Q 014125 332 QDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFED-------------------------L 386 (430)
Q Consensus 332 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~-------------------------l 386 (430)
.|+.|++||+++++++..+.+|...|.+++|+|++++|++++.|+.|++||... +
T Consensus 316 ~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l 395 (410)
T 1vyh_C 316 RDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYV 395 (410)
T ss_dssp TTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCE
T ss_pred CCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEE
Confidence 999999999999999999999999999999999999999999999999996532 7
Q ss_pred ccccCCCcEEEEee
Q 014125 387 HLSGDENCVSVWSF 400 (430)
Q Consensus 387 ~~~~~d~~i~~w~~ 400 (430)
++++.|++|++|++
T Consensus 396 ~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 396 VTGSVDQTVKVWEC 409 (410)
T ss_dssp EEEETTSEEEEEC-
T ss_pred EEEeCCCcEEEEeC
Confidence 78888999999975
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-42 Score=310.15 Aligned_cols=305 Identities=17% Similarity=0.191 Sum_probs=253.9
Q ss_pred cceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccc
Q 014125 51 NQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH 130 (430)
Q Consensus 51 ~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 130 (430)
.....+.+|.+.|++++|+|++++|++|+.||.|++||+.+++... ....|...|.+++|
T Consensus 23 ~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~-----------------~~~~h~~~v~~~~~--- 82 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLG-----------------TLDGHTGTIWSIDV--- 82 (369)
T ss_dssp EEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEE-----------------EECCCSSCEEEEEE---
T ss_pred cccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhh-----------------hhhhcCCcEEEEEE---
Confidence 3445788999999999999999999999999999999998764322 22346689999999
Q ss_pred cCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cC-----CeEEEEEcCCC
Q 014125 131 MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN-----KSVRVFDVHRP 204 (430)
Q Consensus 131 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d-----~~i~v~d~~~~ 204 (430)
+|++++|++++.||.|++||+.+++.+..+. +.. .+.+++|+|++.+++++ .+ +.|++||+...
T Consensus 83 ----~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~-----~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~ 152 (369)
T 3zwl_B 83 ----DCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPV-----PVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERD 152 (369)
T ss_dssp ----CTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSS-----CEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEEC
T ss_pred ----cCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCC-----CeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCC
Confidence 7789999999999999999999999888877 332 89999999999999955 66 89999999875
Q ss_pred CCccccccc---ccCCCCCCCc--ceEEEEEcCCCCceEEEecCCCeEEEEEcCC-ceeeEEeeccccCeEEEEEccCCC
Q 014125 205 GRDFEKYST---LKGNKEGQAG--IMSAIAFSPTHTGMLAIGSYSQTSAIYREDN-MELLYVLHGQEGGVTHVQFSRDGN 278 (430)
Q Consensus 205 ~~~~~~~~~---~~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~ 278 (430)
......... .......+.. .+.+++|+| ++.+|++++.||.|++||+++ .+.+..+..|...|.+++|+|+++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 231 (369)
T 3zwl_B 153 SATHELTKVSEEPIHKIITHEGLDAATVAGWST-KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLT 231 (369)
T ss_dssp TTTCCEEEECSSCSEEEECCTTCCCEEEEEECG-GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSS
T ss_pred ccceeecccccceeeeccCCcCccceeEEEEcC-CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCC
Confidence 432211100 1111223333 899999999 677999999999999999998 788888999999999999999999
Q ss_pred EEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCC--------------cEEEEEcCCC
Q 014125 279 YLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDG--------------LVHIYDLQTG 344 (430)
Q Consensus 279 ~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--------------~i~vwd~~~~ 344 (430)
+|++++ .|+.|++||+++..... .+ .+...+..++|+|+++++++++.++ .+++||+.++
T Consensus 232 ~l~~~~-~d~~i~v~d~~~~~~~~-~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~ 305 (369)
T 3zwl_B 232 YFITSS-RDTNSFLVDVSTLQVLK-KY----ETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE 305 (369)
T ss_dssp EEEEEE-TTSEEEEEETTTCCEEE-EE----ECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTC
T ss_pred EEEEec-CCceEEEEECCCCceee-ee----cCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCC
Confidence 999999 99999999999875443 22 2677899999999999999999988 8999999999
Q ss_pred CeecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCCCccccccCCCcEEEEeeccccccccc
Q 014125 345 KWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYASMMENA 409 (430)
Q Consensus 345 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~~~~~~ 409 (430)
+.+..+.+|...|.+++|+|++++|++++ .||.|++|++..+.....+
T Consensus 306 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-----------------~dg~v~iw~~~~~~~~~~~ 353 (369)
T 3zwl_B 306 EEIGRVQGHFGPLNTVAISPQGTSYASGG-----------------EDGFIRLHHFEKSYFDFKY 353 (369)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEE-----------------TTSEEEEEEECHHHHTCCC
T ss_pred cchhheecccCcEEEEEECCCCCEEEEEc-----------------CCCeEEEEECccccchhHH
Confidence 99999999999999999999999999998 4677888887766554443
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-43 Score=324.28 Aligned_cols=293 Identities=16% Similarity=0.237 Sum_probs=241.5
Q ss_pred CCceeEEEECcCCc-eEEEe----------cCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeec
Q 014125 60 NNFLKGIKWSPDGS-SFLTS----------SEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWF 128 (430)
Q Consensus 60 ~~~v~~~~~sp~~~-~l~s~----------~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 128 (430)
...|.+++|+|+|+ +|++| +.|+.|+|||+.++... .......|...|.+++|
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~---------------~~~~~~~~~~~v~~~~~- 75 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSE---------------KPIASLQVDSKFNDLDW- 75 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC---------------SCSCCCCCSSCEEEEEE-
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCC---------------cEEEEEecCCceEEEEE-
Confidence 34689999999987 99999 89999999999865321 11123346678999999
Q ss_pred cccCccCCCCceEEEEeCCCcEEEEeccC----CceeeeeecccccccccceEEEEECCC-CcEEEEE-cCCeEEEEEcC
Q 014125 129 PHMSASDPTSCVFASTTRDHPIHLWDATT----GLLRCTYRAYDAVDEITAAFSVAFNPT-GTKIFAG-YNKSVRVFDVH 202 (430)
Q Consensus 129 ~~~~~~~~~~~~l~~~~~dg~i~vwd~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~-~d~~i~v~d~~ 202 (430)
+|++.+|++++.||.|++||+.+ .+....+..+.. .|.+++|+|+ +.+|+++ .|+.|++||+.
T Consensus 76 ------s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 144 (416)
T 2pm9_A 76 ------SHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSS-----SVKTVKFNAKQDNVLASGGNNGEIFIWDMN 144 (416)
T ss_dssp ------CSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSS-----CCCEEEECSSSTTBEEEECSSSCEEBCBTT
T ss_pred ------CCCCCeEEEEccCCeEEEeecccccccccchhhccCCcc-----ceEEEEEcCCCCCEEEEEcCCCeEEEEECC
Confidence 77899999999999999999987 345666655554 8999999998 7888855 89999999998
Q ss_pred CCCCccccc-ccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeecc------ccCeEEEEEcc
Q 014125 203 RPGRDFEKY-STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ------EGGVTHVQFSR 275 (430)
Q Consensus 203 ~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~------~~~i~~~~~~~ 275 (430)
......... .........|...|.+++|+|+++.+|++++.|+.|++||+++++.+..+..+ ...|.+++|+|
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 224 (416)
T 2pm9_A 145 KCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHP 224 (416)
T ss_dssp TTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECS
T ss_pred CCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECC
Confidence 754111000 01112335788899999999976889999999999999999999988888766 78899999999
Q ss_pred CC-CEEEEEecCCC---eEEEEeCCCCceEEEEeeccc-CCccceEEEEEcC-CCCEEEEEccCCcEEEEEcCCCCeecc
Q 014125 276 DG-NYLYTGGRKDP---YILCWDLRKAVQVVYKLYRSS-EHTNQRILFDIEP-SGRHLGTGGQDGLVHIYDLQTGKWISG 349 (430)
Q Consensus 276 ~~-~~l~~~~~~d~---~i~i~d~~~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~ 349 (430)
++ .++++++ .|+ .|++||+++..... .... .|...|.+++|+| ++++|++++.||.|++||+++++.+..
T Consensus 225 ~~~~~l~~~~-~d~~~~~i~~~d~~~~~~~~---~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~ 300 (416)
T 2pm9_A 225 KNSTRVATAT-GSDNDPSILIWDLRNANTPL---QTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQ 300 (416)
T ss_dssp SCTTEEEEEE-CCSSSCCCCEEETTSTTSCS---BCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEE
T ss_pred CCCCEEEEEE-CCCCCceEEEEeCCCCCCCc---EEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCcccee
Confidence 97 5788887 888 99999999864332 2224 6889999999999 899999999999999999999999999
Q ss_pred cccccCCeeEEEEcCCC-cEEEEeeCCceeeecCC
Q 014125 350 FQAAADTVNGFSFHPFL-PMAASSSGHRRFPVDDF 383 (430)
Q Consensus 350 ~~~~~~~v~~~~~~~~~-~~l~s~~~d~~~~vw~~ 383 (430)
+.+|...|.+++|+|++ .+|++++.|+.+++|+.
T Consensus 301 ~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~ 335 (416)
T 2pm9_A 301 FPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTL 335 (416)
T ss_dssp EECSSSCCCCEEECTTCTTEEEECCSSSEEEEEES
T ss_pred ecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEc
Confidence 99999999999999999 89999999999999954
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-42 Score=334.59 Aligned_cols=295 Identities=19% Similarity=0.286 Sum_probs=241.1
Q ss_pred eeecccCCCceeEEEECcCC-ceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecccc
Q 014125 53 FRTSSIPNNFLKGIKWSPDG-SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (430)
Q Consensus 53 ~~~~~~h~~~v~~~~~sp~~-~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (430)
...+.+|.+.|++|+|+|++ ++|+||+.||+|++|++.+..... .........|...|.+++|
T Consensus 375 ~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~------------~~~~~~~~~h~~~v~~v~~---- 438 (694)
T 3dm0_A 375 KGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAY------------GVAQRRLTGHSHFVEDVVL---- 438 (694)
T ss_dssp EEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCS------------CEEEEEEECCSSCEEEEEE----
T ss_pred hhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccc------------ccccceecCCCCcEEEEEE----
Confidence 34688999999999999864 799999999999999997643211 1122345568889999999
Q ss_pred CccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCcccc
Q 014125 132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEK 210 (430)
Q Consensus 132 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~ 210 (430)
+|++++|++|+.||+|++||+.+++....+..|.. .|.+++|+|++.+|+ ++.|++|++||+....
T Consensus 439 ---s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~-----~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~----- 505 (694)
T 3dm0_A 439 ---SSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTK-----DVLSVAFSLDNRQIVSASRDRTIKLWNTLGEC----- 505 (694)
T ss_dssp ---CTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSS-----CEEEEEECTTSSCEEEEETTSCEEEECTTSCE-----
T ss_pred ---CCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCC-----CEEEEEEeCCCCEEEEEeCCCEEEEEECCCCc-----
Confidence 77899999999999999999999998888877765 899999999999888 5599999999985421
Q ss_pred cccccCCCCCCCcceEEEEEcCCC-CceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCe
Q 014125 211 YSTLKGNKEGQAGIMSAIAFSPTH-TGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPY 289 (430)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~ 289 (430)
.........+|...|.+++|+|++ ...+++++.|++|++||+++++....+.+|.+.|++++|+|++++|++++ .||.
T Consensus 506 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~-~Dg~ 584 (694)
T 3dm0_A 506 KYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGG-KDGV 584 (694)
T ss_dssp EEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSB
T ss_pred ceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCCe
Confidence 112223345788899999999954 35899999999999999999999999999999999999999999999999 9999
Q ss_pred EEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccccccc---------------
Q 014125 290 ILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAA--------------- 354 (430)
Q Consensus 290 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~--------------- 354 (430)
|++||++++.... . ..+...+.+++|+|++.+|++++ ++.|++||+++++.+..+..+.
T Consensus 585 i~iwd~~~~~~~~-~----~~~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (694)
T 3dm0_A 585 VLLWDLAEGKKLY-S----LEANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAAT 658 (694)
T ss_dssp CEEEETTTTEEEE-C----CBCSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC--------------
T ss_pred EEEEECCCCceEE-E----ecCCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccC
Confidence 9999999875432 2 23456799999999998887765 5569999999988776654321
Q ss_pred ----CCeeEEEEcCCCcEEEEeeCCceeeecCC
Q 014125 355 ----DTVNGFSFHPFLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 355 ----~~v~~~~~~~~~~~l~s~~~d~~~~vw~~ 383 (430)
..+++++|+|++++|++|+.||.|+||+.
T Consensus 659 ~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i 691 (694)
T 3dm0_A 659 KRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGI 691 (694)
T ss_dssp --CCCCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred CceeEEeeeEEEcCCCCEEEEEcCCCeEEEEec
Confidence 13789999999999999997666665554
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-42 Score=297.70 Aligned_cols=244 Identities=19% Similarity=0.232 Sum_probs=209.0
Q ss_pred eeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-Ec
Q 014125 114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GY 192 (430)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~ 192 (430)
....|...|.+++| +|++.+|++++.||.|++||+.++..+..+..+.. +|.+++|+|++++|++ +.
T Consensus 8 ~~~~h~~~V~~~~f-------sp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~s~s~ 75 (304)
T 2ynn_A 8 TFSNRSDRVKGIDF-------HPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTET-----PVRAGKFIARKNWIIVGSD 75 (304)
T ss_dssp EEEEECSCEEEEEE-------CSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSS-----CEEEEEEEGGGTEEEEEET
T ss_pred eecCCCCceEEEEE-------CCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCC-----cEEEEEEeCCCCEEEEECC
Confidence 44567789999999 77899999999999999999999998888887665 8999999999999995 58
Q ss_pred CCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCc-eeeEEeeccccCeEEE
Q 014125 193 NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-ELLYVLHGQEGGVTHV 271 (430)
Q Consensus 193 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~-~~~~~~~~~~~~i~~~ 271 (430)
|+.|++||+.++. ....+.+|...|.+++|+| ++.+|++|+.|++|++||++++ .....+.+|...|.++
T Consensus 76 d~~i~vwd~~~~~--------~~~~~~~h~~~v~~~~~~~-~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v 146 (304)
T 2ynn_A 76 DFRIRVFNYNTGE--------KVVDFEAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCV 146 (304)
T ss_dssp TSEEEEEETTTCC--------EEEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEE
T ss_pred CCEEEEEECCCCc--------EEEEEeCCCCcEEEEEEcC-CCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEE
Confidence 9999999998742 1222367889999999999 6779999999999999999887 5567788999999999
Q ss_pred EEcc-CCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcC--CCCEEEEEccCCcEEEEEcCCCCeec
Q 014125 272 QFSR-DGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEP--SGRHLGTGGQDGLVHIYDLQTGKWIS 348 (430)
Q Consensus 272 ~~~~-~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~ 348 (430)
+|+| ++..|++++ .|+.|++||++......... ..+...+..+.|+| ++.+|++|+.|+.|++||+++++++.
T Consensus 147 ~~~p~~~~~l~sgs-~D~~v~iwd~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~ 222 (304)
T 2ynn_A 147 AFNPKDPSTFASGC-LDRTVKVWSLGQSTPNFTLT---TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVA 222 (304)
T ss_dssp EECTTCTTEEEEEE-TTSEEEEEETTCSSCSEEEE---CCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEE
T ss_pred EECCCCCCEEEEEe-CCCeEEEEECCCCCccceec---cCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccce
Confidence 9999 578899999 99999999998765443222 35667788899987 67899999999999999999999999
Q ss_pred ccccccCCeeEEEEcCCCcEEEEeeCCceeeecC
Q 014125 349 GFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDD 382 (430)
Q Consensus 349 ~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~ 382 (430)
.+.+|...|.+++|+|++++|++++.|+.|++||
T Consensus 223 ~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd 256 (304)
T 2ynn_A 223 TLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256 (304)
T ss_dssp EEECCSSCEEEEEECSSSSEEEEEETTSCEEEEE
T ss_pred eeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEE
Confidence 9999999999999999999999998654444443
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-42 Score=317.62 Aligned_cols=296 Identities=15% Similarity=0.139 Sum_probs=224.3
Q ss_pred cceeecccCCCceeEEEECc-CCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecc
Q 014125 51 NQFRTSSIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFP 129 (430)
Q Consensus 51 ~~~~~~~~h~~~v~~~~~sp-~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 129 (430)
+..+...+|...|+||+|+| ++++||+|+.||.|+|||+.++... .......|...|.+++|+|
T Consensus 110 ~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~---------------~~~~~~gH~~~V~~l~f~p 174 (435)
T 4e54_B 110 RILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP---------------TFIKGIGAGGSITGLKFNP 174 (435)
T ss_dssp TSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC---------------EEECCCSSSCCCCEEEECS
T ss_pred eecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce---------------eEEEccCCCCCEEEEEEeC
Confidence 44556678999999999999 5679999999999999999765321 1112345788999999944
Q ss_pred ccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcc
Q 014125 130 HMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDF 208 (430)
Q Consensus 130 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~ 208 (430)
. ++.+|++|+.||+|++||++++........+. ....+.+++|+|++.+|++| .||.|++||++..
T Consensus 175 ~------~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~---- 241 (435)
T 4e54_B 175 L------NTNQFYASSMEGTTRLQDFKGNILRVFASSDT---INIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK---- 241 (435)
T ss_dssp S------CTTEEEEECSSSCEEEEETTSCEEEEEECCSS---CSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC----
T ss_pred C------CCCEEEEEeCCCEEEEeeccCCceeEEeccCC---CCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc----
Confidence 2 67899999999999999998765433333222 22367789999999999965 8999999998642
Q ss_pred cccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeE---EeeccccCeEEEEEccCCCEEEEEec
Q 014125 209 EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLY---VLHGQEGGVTHVQFSRDGNYLYTGGR 285 (430)
Q Consensus 209 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~---~~~~~~~~i~~~~~~~~~~~l~~~~~ 285 (430)
....+.+|...|.+++|+|++..++++|+.|+.|++||+++.+... ...+|...|++++|+|+|.+|++++
T Consensus 242 -----~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~- 315 (435)
T 4e54_B 242 -----ELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTD- 315 (435)
T ss_dssp -----BCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEE-
T ss_pred -----eeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEc-
Confidence 1223467889999999999778899999999999999998865433 3357889999999999999999999
Q ss_pred CCCeEEEEeCCCCceEEEEeecccCC--ccceEEEEEcCCCCEEEEEc------------cCCcEEEEEcCCCCeecccc
Q 014125 286 KDPYILCWDLRKAVQVVYKLYRSSEH--TNQRILFDIEPSGRHLGTGG------------QDGLVHIYDLQTGKWISGFQ 351 (430)
Q Consensus 286 ~d~~i~i~d~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~------------~dg~i~vwd~~~~~~~~~~~ 351 (430)
.||.|++||+++.............+ ...+..+.|+|++.++++++ .++.|++||..+++.+..+.
T Consensus 316 ~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~ 395 (435)
T 4e54_B 316 QKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLY 395 (435)
T ss_dssp SSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEEC
T ss_pred CCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEe
Confidence 99999999999876554332211111 11233456677666666554 34579999999999988764
Q ss_pred -cccCCeeEE-EEcCCCcEEEEeeCCceeeec
Q 014125 352 -AAADTVNGF-SFHPFLPMAASSSGHRRFPVD 381 (430)
Q Consensus 352 -~~~~~v~~~-~~~~~~~~l~s~~~d~~~~vw 381 (430)
+|...|.++ +|+|+|.+|++|+ |+.|+||
T Consensus 396 ~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW 426 (435)
T 4e54_B 396 DPESSGISSLNEFNPMGDTLASAM-GYHILIW 426 (435)
T ss_dssp CSSCCCCCCEEEECTTSSCEEEEC-SSEEEEC
T ss_pred CCCCCcEEEEEEECCCCCEEEEEc-CCcEEEE
Confidence 677788887 6999999999875 3333333
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-42 Score=299.61 Aligned_cols=264 Identities=19% Similarity=0.280 Sum_probs=222.3
Q ss_pred ecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceee--eeecccccccccceEEEEECCCCcEEEE-Ec
Q 014125 116 VTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRC--TYRAYDAVDEITAAFSVAFNPTGTKIFA-GY 192 (430)
Q Consensus 116 ~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~ 192 (430)
..|...|++++|.|.. .+++.+|++|+.|++|++|++..++... .+..|.. .|.+++|++++.++++ +.
T Consensus 29 ~~H~~~V~~v~~~~~~---~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~-----~v~~~~~~~~~~~l~s~s~ 100 (321)
T 3ow8_A 29 QAHDDAIWSVAWGTNK---KENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQL-----GVVSVDISHTLPIAASSSL 100 (321)
T ss_dssp TSSSSCEEEEEEC----------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSS-----CEEEEEECSSSSEEEEEET
T ss_pred ccCCCcEEEEEEecCC---CCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCC-----CEEEEEECCCCCEEEEEeC
Confidence 3577899999996531 1356799999999999999998776433 3444443 8999999999999985 58
Q ss_pred CCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEE
Q 014125 193 NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQ 272 (430)
Q Consensus 193 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~ 272 (430)
|+.|++||+..+.. ......+...+.+++|+| ++.+|++|+.+|.|++||+++++....+..|...|.+++
T Consensus 101 D~~i~lWd~~~~~~--------~~~~~~~~~~~~~~~~sp-dg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~ 171 (321)
T 3ow8_A 101 DAHIRLWDLENGKQ--------IKSIDAGPVDAWTLAFSP-DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIA 171 (321)
T ss_dssp TSEEEEEETTTTEE--------EEEEECCTTCCCCEEECT-TSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEE
T ss_pred CCcEEEEECCCCCE--------EEEEeCCCccEEEEEECC-CCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEE
Confidence 99999999976421 112245566788999999 677999999999999999999999889988999999999
Q ss_pred EccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccccc
Q 014125 273 FSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQA 352 (430)
Q Consensus 273 ~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 352 (430)
|+|++++|++++ .||.|++||++++... ..+ .+|...|.+++|+|++++|++|+.|+.|++||+++++.+..+.+
T Consensus 172 ~spdg~~lasg~-~dg~i~iwd~~~~~~~-~~~---~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 246 (321)
T 3ow8_A 172 YSPDGKYLASGA-IDGIINIFDIATGKLL-HTL---EGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSG 246 (321)
T ss_dssp ECTTSSEEEEEE-TTSCEEEEETTTTEEE-EEE---CCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECC
T ss_pred ECCCCCEEEEEc-CCCeEEEEECCCCcEE-EEE---cccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcC
Confidence 999999999999 9999999999987433 232 57888999999999999999999999999999999999999999
Q ss_pred ccCCeeEEEEcCCCcEEEEeeCCceeeecCCCc-------------------------cccccCCCcEEEEeec
Q 014125 353 AADTVNGFSFHPFLPMAASSSGHRRFPVDDFED-------------------------LHLSGDENCVSVWSFL 401 (430)
Q Consensus 353 ~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~-------------------------l~~~~~d~~i~~w~~~ 401 (430)
|...|.+++|+|++.+|++++.|+.+++||... |++++.|+.|++||..
T Consensus 247 h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 247 HASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 999999999999999999999999999996432 7888889999999863
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-41 Score=307.67 Aligned_cols=309 Identities=13% Similarity=0.115 Sum_probs=243.7
Q ss_pred cceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccc
Q 014125 51 NQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH 130 (430)
Q Consensus 51 ~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 130 (430)
...+.+.+|.+.|++++|+| ++|++|+.||.|++|++.++..... .........|...|.+++|
T Consensus 7 ~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~-----------~~~~~~~~~h~~~v~~~~~--- 70 (397)
T 1sq9_A 7 ATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENP-----------KDKSYSHFVHKSGLHHVDV--- 70 (397)
T ss_dssp EEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCG-----------GGGEEEEECCTTCEEEEEE---
T ss_pred hhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccC-----------CCcceEEecCCCcEEEEEE---
Confidence 45668899999999999999 7999999999999999987642111 1112233467789999999
Q ss_pred cCccCCC----C---ceEEEEeCCCcEEEEeccCCce-----eeeeecccccccccceEEEEEC----CCCcE-EEE-Ec
Q 014125 131 MSASDPT----S---CVFASTTRDHPIHLWDATTGLL-----RCTYRAYDAVDEITAAFSVAFN----PTGTK-IFA-GY 192 (430)
Q Consensus 131 ~~~~~~~----~---~~l~~~~~dg~i~vwd~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~----~~~~~-l~~-~~ 192 (430)
+|+ + .+|++++.||.|++|++.+++. ...+..+........|.+++|+ |++.+ |++ +.
T Consensus 71 ----~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~ 146 (397)
T 1sq9_A 71 ----LQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDV 146 (397)
T ss_dssp ----EEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEET
T ss_pred ----ecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeC
Confidence 456 8 8999999999999999998886 6666665311002389999999 99998 875 58
Q ss_pred CCeEEEEEcCC------CCCcc-ccccccc---CCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEee
Q 014125 193 NKSVRVFDVHR------PGRDF-EKYSTLK---GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH 262 (430)
Q Consensus 193 d~~i~v~d~~~------~~~~~-~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~ 262 (430)
|+.|++||+.. ..... .....+. .....|...+.+++|+| ++ ++++++.||.|++||+++++.+..+.
T Consensus 147 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~dg~i~i~d~~~~~~~~~~~ 224 (397)
T 1sq9_A 147 KGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE-RG-LIATGFNNGTVQISELSTLRPLYNFE 224 (397)
T ss_dssp TSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT-TS-EEEEECTTSEEEEEETTTTEEEEEEE
T ss_pred CCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECC-Cc-eEEEEeCCCcEEEEECCCCceeEEEe
Confidence 99999999986 22111 0000110 01144678899999999 45 99999999999999999999999999
Q ss_pred c---c---ccCeEEEEEccCCCEEEEEecCC---CeEEEEeCCCCceEEEEeecccC-------------CccceEEEEE
Q 014125 263 G---Q---EGGVTHVQFSRDGNYLYTGGRKD---PYILCWDLRKAVQVVYKLYRSSE-------------HTNQRILFDI 320 (430)
Q Consensus 263 ~---~---~~~i~~~~~~~~~~~l~~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~-------------~~~~v~~~~~ 320 (430)
. | ...|.+++|+|++++|++++ .| +.|++||+++..... .+ .. |...|.+++|
T Consensus 225 ~~~~h~~~~~~i~~i~~~~~~~~l~~~~-~d~~~g~i~i~d~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~v~~~~~ 299 (397)
T 1sq9_A 225 SQHSMINNSNSIRSVKFSPQGSLLAIAH-DSNSFGCITLYETEFGERIG-SL---SVPTHSSQASLGEFAHSSWVMSLSF 299 (397)
T ss_dssp CCC---CCCCCEEEEEECSSTTEEEEEE-EETTEEEEEEEETTTCCEEE-EE---CBC--------CCBSBSSCEEEEEE
T ss_pred ccccccccCCccceEEECCCCCEEEEEe-cCCCCceEEEEECCCCcccc-ee---ccCcccccccccccccCCcEEEEEE
Confidence 8 8 99999999999999999999 89 999999999875432 22 34 8889999999
Q ss_pred cCCCCEEEEEccCCcEEEEEcCCCCeecccc------cc---------------cCCeeEEEEcCCC----------cEE
Q 014125 321 EPSGRHLGTGGQDGLVHIYDLQTGKWISGFQ------AA---------------ADTVNGFSFHPFL----------PMA 369 (430)
Q Consensus 321 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~------~~---------------~~~v~~~~~~~~~----------~~l 369 (430)
+|++++|++++.||.|++||+.+++.+..+. +| ...|.+++|+|++ ++|
T Consensus 300 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l 379 (397)
T 1sq9_A 300 NDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESL 379 (397)
T ss_dssp CSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEE
T ss_pred CCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceE
Confidence 9999999999999999999999999999998 77 8999999999998 677
Q ss_pred EEeeCCceeeecCCCccccccCCCcEEEEeeccc
Q 014125 370 ASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYA 403 (430)
Q Consensus 370 ~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~ 403 (430)
++++ .|+.|++|++..+
T Consensus 380 ~s~~-----------------~dg~i~iw~~~~g 396 (397)
T 1sq9_A 380 CCVC-----------------LDRSIRWFREAGG 396 (397)
T ss_dssp EEEE-----------------TTTEEEEEEEEC-
T ss_pred EEec-----------------CCCcEEEEEcCCC
Confidence 7776 4666777766544
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-42 Score=302.65 Aligned_cols=268 Identities=15% Similarity=0.159 Sum_probs=203.8
Q ss_pred CCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeec------ccccccccceEEEEECCCCcEEEEE
Q 014125 118 EGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRA------YDAVDEITAAFSVAFNPTGTKIFAG 191 (430)
Q Consensus 118 ~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~l~~~ 191 (430)
+...|.+++| +|||.+|++++ |+++++||............ .....+...|.+++|+|++.+++++
T Consensus 29 ~~~~v~~~~f-------s~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~l~~~s 100 (344)
T 4gqb_B 29 MERQLEAARY-------RSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERGILVAS 100 (344)
T ss_dssp CCSEEEEEEE-------CTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTTEEEEEE
T ss_pred ccCCEEEEEE-------CCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCCeEEEEE
Confidence 4467999999 78999998887 77888887421100000000 0011123379999999998777788
Q ss_pred cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEE
Q 014125 192 YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHV 271 (430)
Q Consensus 192 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~ 271 (430)
.||.|++||+.++.... .......+|...|++++|+| ++.+|++|+.|++|++||+++++.+..+.+|...|+++
T Consensus 101 ~dg~v~lWd~~~~~~~~----~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~ 175 (344)
T 4gqb_B 101 DSGAVELWELDENETLI----VSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCV 175 (344)
T ss_dssp TTSEEEEEEECTTSSCE----EEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred CCCEEEEEeccCCCcee----EeeccccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEE
Confidence 99999999998753321 12222357899999999999 67799999999999999999999999999999999999
Q ss_pred EEccCCC-EEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCC-CCEEEEEccCCcEEEEEcCCCCeecc
Q 014125 272 QFSRDGN-YLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPS-GRHLGTGGQDGLVHIYDLQTGKWISG 349 (430)
Q Consensus 272 ~~~~~~~-~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~ 349 (430)
+|+|++. .|++++ .|+.|++||++++..... + ....+...+.+++|+|+ +++|++|+.||.|++||+++++++..
T Consensus 176 ~~~~~~~~~l~s~s-~D~~v~iwd~~~~~~~~~-~-~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~ 252 (344)
T 4gqb_B 176 AASPHKDSVFLSCS-EDNRILLWDTRCPKPASQ-I-GCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLS 252 (344)
T ss_dssp EECSSCTTEEEEEE-TTSCEEEEETTSSSCEEE-C-C----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEE
T ss_pred EecCCCCCceeeec-cccccccccccccceeee-e-ecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEE
Confidence 9999986 567777 999999999998754432 2 22345667899999995 57899999999999999999999999
Q ss_pred cccccCCeeEEEEcCCC-cEEEEeeCCceeeecCCCc---cccccCCCcEEEEeec
Q 014125 350 FQAAADTVNGFSFHPFL-PMAASSSGHRRFPVDDFED---LHLSGDENCVSVWSFL 401 (430)
Q Consensus 350 ~~~~~~~v~~~~~~~~~-~~l~s~~~d~~~~vw~~~~---l~~~~~d~~i~~w~~~ 401 (430)
+.+|...|++++|+|++ ++|++++.|+.|+|||... +...++.+.|+--.+.
T Consensus 253 ~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~s 308 (344)
T 4gqb_B 253 SAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWS 308 (344)
T ss_dssp EECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEEC
T ss_pred EcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEe
Confidence 99999999999999998 5899999888888887543 3334555555544444
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-41 Score=299.30 Aligned_cols=262 Identities=16% Similarity=0.289 Sum_probs=223.3
Q ss_pred eecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-EcC
Q 014125 115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYN 193 (430)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d 193 (430)
..+|...|++++| +|++++|++|+.||+|++||+.+++....+..+.. .|.+++|+|++.++++ +.|
T Consensus 51 l~gH~~~v~~~~~-------s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~-----~v~~~~~s~~~~~l~s~~~d 118 (340)
T 1got_B 51 LRGHLAKIYAMHW-------GTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSS-----WVMTCAYAPSGNYVACGGLD 118 (340)
T ss_dssp ECCCSSCEEEEEE-------CTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSS-----CEEEEEECTTSSEEEEEETT
T ss_pred ecCCCCceEEEEE-------CCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCc-----cEEEEEECCCCCEEEEEeCC
Confidence 3457789999999 77899999999999999999999998888877665 8999999999999995 589
Q ss_pred CeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEE
Q 014125 194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQF 273 (430)
Q Consensus 194 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~ 273 (430)
+.|++|++........ ......+|...+.++.|+++ + .+++++.|++|++||+++++.+..+.+|.+.|.+++|
T Consensus 119 ~~v~iw~~~~~~~~~~----~~~~~~~h~~~v~~~~~~~~-~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~ 192 (340)
T 1got_B 119 NICSIYNLKTREGNVR----VSRELAGHTGYLSCCRFLDD-N-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSL 192 (340)
T ss_dssp CEEEEEETTTCSBSCE----EEEEEECCSSCEEEEEEEET-T-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred CeEEEEECccCCCcce----eEEEecCCCccEEEEEECCC-C-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEE
Confidence 9999999976432221 12234678889999999984 3 5889999999999999999999999999999999999
Q ss_pred ccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccccc-
Q 014125 274 SRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQA- 352 (430)
Q Consensus 274 ~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~- 352 (430)
+|+++++++++ .|+.|++||++++.... . ..+|...|.+++|+|++++|++|+.||.|++||+++++.+..+..
T Consensus 193 ~~~~~~l~sg~-~d~~v~~wd~~~~~~~~-~---~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~ 267 (340)
T 1got_B 193 APDTRLFVSGA-CDASAKLWDVREGMCRQ-T---FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD 267 (340)
T ss_dssp CTTSSEEEEEE-TTSCEEEEETTTCSEEE-E---ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCT
T ss_pred CCCCCEEEEEe-CCCcEEEEECCCCeeEE-E---EcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccC
Confidence 99999999999 99999999999875432 2 257889999999999999999999999999999999887766642
Q ss_pred -ccCCeeEEEEcCCCcEEEEeeCCceeeecCCC-------------------------ccccccCCCcEEEEe
Q 014125 353 -AADTVNGFSFHPFLPMAASSSGHRRFPVDDFE-------------------------DLHLSGDENCVSVWS 399 (430)
Q Consensus 353 -~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~-------------------------~l~~~~~d~~i~~w~ 399 (430)
+...|.+++|+|++++|++++.|+.+++||.. .|++++.|+.|++|+
T Consensus 268 ~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 268 NIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp TCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 33479999999999999999999999998542 267777778888775
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-41 Score=301.68 Aligned_cols=305 Identities=17% Similarity=0.227 Sum_probs=249.7
Q ss_pred cCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCC
Q 014125 58 IPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT 137 (430)
Q Consensus 58 ~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 137 (430)
.|.+.|.+++|+|||++++++..++.+.+|.... .........|...|.+++| +|+
T Consensus 7 ~~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~h~~~v~~~~~-------~~~ 62 (337)
T 1gxr_A 7 MGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPR-----------------HARQINTLNHGEVVCAVTI-------SNP 62 (337)
T ss_dssp EEEEECCEEEECSSSCEEECCCCTTSSSSTTCCS-----------------EEEEEEEECCSSCCCEEEE-------CSS
T ss_pred ccCCceeEEEECCCCCEEEeecCCCcEeccccCC-----------------ccccceeccCCCceEEEEE-------ecC
Confidence 3566799999999999999988877766664432 1122234568889999999 778
Q ss_pred CceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCCcccccccccC
Q 014125 138 SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFEKYSTLKG 216 (430)
Q Consensus 138 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~~ 216 (430)
+++|++++ ||.|++||+.+++....+.......+...|.+++|+|+++++++ +.|+.|++||+...... ...
T Consensus 63 ~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~------~~~ 135 (337)
T 1gxr_A 63 TRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR------IKA 135 (337)
T ss_dssp SSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--E------EEE
T ss_pred CcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcc------eee
Confidence 99999999 99999999988764433332221223448999999999998885 58999999999874321 112
Q ss_pred CCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCC
Q 014125 217 NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR 296 (430)
Q Consensus 217 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~ 296 (430)
....|...+.+++|+| ++.++++++.||.|++||+++++....+..|...|.+++|+|++++|++++ .|+.|++||++
T Consensus 136 ~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~~~d~~ 213 (337)
T 1gxr_A 136 ELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGG-LDNTVRSWDLR 213 (337)
T ss_dssp EEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETT
T ss_pred ecccCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEe-cCCcEEEEECC
Confidence 2356778899999999 677999999999999999999999999999999999999999999999999 99999999999
Q ss_pred CCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCc
Q 014125 297 KAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHR 376 (430)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~ 376 (430)
+..... .. .+...+.+++|+|++++|++++.|+.|++||+++++.. .+..|...|.+++|+|++++|++++.|+
T Consensus 214 ~~~~~~-~~----~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg 287 (337)
T 1gxr_A 214 EGRQLQ-QH----DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDN 287 (337)
T ss_dssp TTEEEE-EE----ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCceEe-ee----cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCCccceeEEEECCCCCEEEEecCCC
Confidence 875432 22 36678999999999999999999999999999988754 5677999999999999999999999999
Q ss_pred eeeecCCCc------------------------cccccCCCcEEEEeec
Q 014125 377 RFPVDDFED------------------------LHLSGDENCVSVWSFL 401 (430)
Q Consensus 377 ~~~vw~~~~------------------------l~~~~~d~~i~~w~~~ 401 (430)
.+++|+... +++++.||.|++|++.
T Consensus 288 ~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 288 LLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp EEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred cEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence 999995432 7778888999999874
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-41 Score=296.27 Aligned_cols=286 Identities=14% Similarity=0.203 Sum_probs=240.1
Q ss_pred cccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccC
Q 014125 56 SSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASD 135 (430)
Q Consensus 56 ~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 135 (430)
..+|.+.|++++|+|++++|++++ ||.|++|++.++....... ......+...|.+++| +
T Consensus 47 ~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~------------~~~~~~~~~~v~~~~~-------~ 106 (337)
T 1gxr_A 47 TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVS------------QLDCLNRDNYIRSCKL-------L 106 (337)
T ss_dssp EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSE------------EEECSCTTSBEEEEEE-------C
T ss_pred eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeee------------cccccCCCCcEEEEEE-------c
Confidence 347999999999999999999999 9999999998754321111 1111256789999999 7
Q ss_pred CCCceEEEEeCCCcEEEEeccCCc--eeeeeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCCcccccc
Q 014125 136 PTSCVFASTTRDHPIHLWDATTGL--LRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFEKYS 212 (430)
Q Consensus 136 ~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~~~~~ 212 (430)
|++++|++++.||.|++||+.+++ ....+..+.. .+.+++|+|++.++++ +.|+.|++||++...
T Consensus 107 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~------- 174 (337)
T 1gxr_A 107 PDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAP-----ACYALAISPDSKVCFSCCSDGNIAVWDLHNQT------- 174 (337)
T ss_dssp TTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSS-----CEEEEEECTTSSEEEEEETTSCEEEEETTTTE-------
T ss_pred CCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCC-----ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCc-------
Confidence 789999999999999999999887 3444444443 8999999999999885 589999999997631
Q ss_pred cccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEE
Q 014125 213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILC 292 (430)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i 292 (430)
.......|...+.+++|+| ++..+++++.||.|++||+++++.+..+. +...+.+++|+|++++|++++ .++.|++
T Consensus 175 -~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~-~~~~i~~ 250 (337)
T 1gxr_A 175 -LVRQFQGHTDGASCIDISN-DGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGM-ESSNVEV 250 (337)
T ss_dssp -EEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEE-TTSCEEE
T ss_pred -eeeeeecccCceEEEEECC-CCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEc-CCCcEEE
Confidence 2222356788899999999 66799999999999999999998887775 778899999999999999999 9999999
Q ss_pred EeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEe
Q 014125 293 WDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASS 372 (430)
Q Consensus 293 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 372 (430)
||+++.... . ...|...+.+++|+|++++|++++.||.|++||+.+++.+... .|...|.+++|+|++++|+++
T Consensus 251 ~~~~~~~~~--~---~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~ 324 (337)
T 1gxr_A 251 LHVNKPDKY--Q---LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTG 324 (337)
T ss_dssp EETTSSCEE--E---ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEE
T ss_pred EECCCCCeE--E---EcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEe
Confidence 999987532 2 2568889999999999999999999999999999999887544 488899999999999999999
Q ss_pred eCCceeeecCC
Q 014125 373 SGHRRFPVDDF 383 (430)
Q Consensus 373 ~~d~~~~vw~~ 383 (430)
+.||.+++|+.
T Consensus 325 ~~dg~i~iw~~ 335 (337)
T 1gxr_A 325 SGDKKATVYEV 335 (337)
T ss_dssp ETTSCEEEEEE
T ss_pred cCCCeEEEEEE
Confidence 99999999974
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-41 Score=303.77 Aligned_cols=294 Identities=13% Similarity=0.111 Sum_probs=229.7
Q ss_pred cceeecccCCCceeEEEECcCC-ceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecc
Q 014125 51 NQFRTSSIPNNFLKGIKWSPDG-SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFP 129 (430)
Q Consensus 51 ~~~~~~~~h~~~v~~~~~sp~~-~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 129 (430)
...+.+.+|.+.|++++|+|++ ++||+|+.||.|+|||+.++..... .....|...|.+++|
T Consensus 64 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~---------------~~~~~h~~~v~~~~~-- 126 (383)
T 3ei3_B 64 KLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSF---------------IQGMGPGDAITGMKF-- 126 (383)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEE---------------ECCCSTTCBEEEEEE--
T ss_pred ceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCccccee---------------eecCCcCCceeEEEe--
Confidence 3455788999999999999999 9999999999999999986533211 111247789999999
Q ss_pred ccCccCC-CCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCCc
Q 014125 130 HMSASDP-TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRD 207 (430)
Q Consensus 130 ~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~~ 207 (430)
+| ++.+|++++.|+.|++||+.+ .....+..+. .+...|.+++|+|++.+|++ +.|+.|++||++. .
T Consensus 127 -----~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~--~- 195 (383)
T 3ei3_B 127 -----NQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTD--SWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDG--H- 195 (383)
T ss_dssp -----ETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCC--CSSCCEEEEEEETTTTEEEEEETTSEEEEEETTS--C-
T ss_pred -----CCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccC--CCCCCeEEEEECCCCCEEEEECCCCCEEEEECCC--C-
Confidence 55 678999999999999999986 4444444333 22347999999999999995 5899999999942 1
Q ss_pred ccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCC----ceeeEEeeccccCeEEEEEcc-CCCEEEE
Q 014125 208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN----MELLYVLHGQEGGVTHVQFSR-DGNYLYT 282 (430)
Q Consensus 208 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~----~~~~~~~~~~~~~i~~~~~~~-~~~~l~~ 282 (430)
......+|...|.+++|+|++..++++++.|+.|++||+++ +..+..+ .|...|.+++|+| ++++|++
T Consensus 196 ------~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~ 268 (383)
T 3ei3_B 196 ------EIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLT 268 (383)
T ss_dssp ------EEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEE
T ss_pred ------EEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEE
Confidence 11223568889999999996555999999999999999998 5566666 5899999999999 9999999
Q ss_pred EecCCCeEEEEeCCCCceEEEEeec---ccCC----------ccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecc
Q 014125 283 GGRKDPYILCWDLRKAVQVVYKLYR---SSEH----------TNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISG 349 (430)
Q Consensus 283 ~~~~d~~i~i~d~~~~~~~~~~~~~---~~~~----------~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 349 (430)
++ .|+.|++||+++.......... ...+ ...+..++|+|++++ +|+.||.|++||+.+++.+..
T Consensus 269 ~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~ 345 (383)
T 3ei3_B 269 TD-QRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQ 345 (383)
T ss_dssp EE-SSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEE
T ss_pred Ec-CCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeee
Confidence 99 9999999999876543222111 0111 234455677777776 788999999999999999999
Q ss_pred ccc--ccCCeeEEEEcCCCcEEEEeeCCceeeecCC
Q 014125 350 FQA--AADTVNGFSFHPFLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 350 ~~~--~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~ 383 (430)
+.+ |...+..++|+|++++|++++ |+.|++|+.
T Consensus 346 l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~ 380 (383)
T 3ei3_B 346 LRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNR 380 (383)
T ss_dssp ECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEEC
T ss_pred ecCCCCCceEEEEEEecCccEEEEec-CCcEEEEec
Confidence 987 456788889999999999996 555555544
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-41 Score=310.50 Aligned_cols=279 Identities=15% Similarity=0.154 Sum_probs=225.7
Q ss_pred CceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCce
Q 014125 61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV 140 (430)
Q Consensus 61 ~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (430)
+.+++++|+|+|++|++++.||.|++||+.+......+. ....+....| ++++++
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~------------------~~~~~~~~~~-------~~~~~~ 111 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLK------------------RADYTAVDTA-------KLQMRR 111 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSC------------------SCCEEEEEEE-------CSSSCE
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEe------------------cCCceEEEEE-------ecCCCE
Confidence 346689999999999999999999999998654321111 1123444455 678999
Q ss_pred EEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCCcccccccccCCCC
Q 014125 141 FASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFEKYSTLKGNKE 219 (430)
Q Consensus 141 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~ 219 (430)
|++++.||.|++||+.+++....+..+.. .|.+++|+|++.+|++ +.|+.|++||++.... ...+.
T Consensus 112 l~~~~~dg~i~iwd~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~--------~~~~~ 178 (420)
T 3vl1_A 112 FILGTTEGDIKVLDSNFNLQREIDQAHVS-----EITKLKFFPSGEALISSSQDMQLKIWSVKDGSN--------PRTLI 178 (420)
T ss_dssp EEEEETTSCEEEECTTSCEEEEETTSSSS-----CEEEEEECTTSSEEEEEETTSEEEEEETTTCCC--------CEEEE
T ss_pred EEEEECCCCEEEEeCCCcceeeecccccC-----ccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcC--------ceEEc
Confidence 99999999999999999888777666554 9999999999999885 5899999999987432 22235
Q ss_pred CCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeecc---c---------------------cCeEEEEEcc
Q 014125 220 GQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ---E---------------------GGVTHVQFSR 275 (430)
Q Consensus 220 ~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~---~---------------------~~i~~~~~~~ 275 (430)
+|...|.+++|+| ++.+|++++.|+.|++||+++++.+..+..| . ..+.+++|+|
T Consensus 179 ~h~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 257 (420)
T 3vl1_A 179 GHRATVTDIAIID-RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT 257 (420)
T ss_dssp CCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC
T ss_pred CCCCcEEEEEEcC-CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC
Confidence 7889999999999 6779999999999999999999988888743 3 3444455678
Q ss_pred CCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCC-EEEEEccCCcEEEEEcCCCCe-eccccc-
Q 014125 276 DGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGR-HLGTGGQDGLVHIYDLQTGKW-ISGFQA- 352 (430)
Q Consensus 276 ~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~-~~~~~~- 352 (430)
++++|++++ .||.|++||+++........ ..|...+.+++|+|++. +|++|+.||.|++||+++++. +..+..
T Consensus 258 ~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~ 333 (420)
T 3vl1_A 258 YGKYVIAGH-VSGVITVHNVFSKEQTIQLP---SKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLIN 333 (420)
T ss_dssp TTEEEEEEE-TTSCEEEEETTTCCEEEEEC---CTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEES
T ss_pred CCCEEEEEc-CCCeEEEEECCCCceeEEcc---cccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhcc
Confidence 999999999 99999999999886544332 46788999999999998 999999999999999998754 677776
Q ss_pred ccCCeeEEEEcCCCcEEEEeeCCceeeecCC
Q 014125 353 AADTVNGFSFHPFLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 353 ~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~ 383 (430)
|...|.++.| +++++|++++.|+.+++|+.
T Consensus 334 ~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~ 363 (420)
T 3vl1_A 334 EGTPINNVYF-AAGALFVSSGFDTSIKLDII 363 (420)
T ss_dssp TTSCEEEEEE-ETTEEEEEETTTEEEEEEEE
T ss_pred CCCCceEEEe-CCCCEEEEecCCccEEEEec
Confidence 5667888855 57889999999999988863
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-40 Score=302.77 Aligned_cols=324 Identities=16% Similarity=0.201 Sum_probs=235.3
Q ss_pred ceeecccCCCceeEEEECc-CCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccc
Q 014125 52 QFRTSSIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH 130 (430)
Q Consensus 52 ~~~~~~~h~~~v~~~~~sp-~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 130 (430)
....+.+|.+.|++++|+| ++++||+|+.||.|++||+.++............ .........|...|.+++|
T Consensus 35 ~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~v~~~~~--- 107 (408)
T 4a11_B 35 DRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVC----SIGRDHPDVHRYSVETVQW--- 107 (408)
T ss_dssp TEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEE----EECTTCTTCCSSCEEEEEE---
T ss_pred ceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccc----cccccccccCCCcEEEEEE---
Confidence 3456788999999999999 9999999999999999999977544332211000 0000011237789999999
Q ss_pred cCccCC-CCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCC---cEEE-EEcCCeEEEEEcCCCC
Q 014125 131 MSASDP-TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG---TKIF-AGYNKSVRVFDVHRPG 205 (430)
Q Consensus 131 ~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~-~~~d~~i~v~d~~~~~ 205 (430)
+| ++.+|++++.||.|++||+.+++....+.... .+.++.|+|.+ .+++ ++.++.|++||++.+.
T Consensus 108 ----~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 177 (408)
T 4a11_B 108 ----YPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEE------TVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS 177 (408)
T ss_dssp ----CTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSS------CEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSC
T ss_pred ----ccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCC------ceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc
Confidence 55 67799999999999999999998887776432 78899998855 4777 4589999999998642
Q ss_pred CcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCce-eeEEe---------------eccccCeE
Q 014125 206 RDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME-LLYVL---------------HGQEGGVT 269 (430)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~-~~~~~---------------~~~~~~i~ 269 (430)
. ......|...|.+++|+|++..++++++.||.|++||++++. ....+ ..|...|.
T Consensus 178 ~--------~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 249 (408)
T 4a11_B 178 C--------SHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVN 249 (408)
T ss_dssp C--------CEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEE
T ss_pred e--------eeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCcee
Confidence 2 222357888999999999666679999999999999998765 33333 46888999
Q ss_pred EEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecc-cCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeec
Q 014125 270 HVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRS-SEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWIS 348 (430)
Q Consensus 270 ~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 348 (430)
+++|+|++++|++++ .||.|++||+++........... ......+........+..+++++.|+.|++||+.+++.+.
T Consensus 250 ~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~ 328 (408)
T 4a11_B 250 GLCFTSDGLHLLTVG-TDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQIT 328 (408)
T ss_dssp EEEECTTSSEEEEEE-TTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEE
T ss_pred EEEEcCCCCEEEEec-CCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCccee
Confidence 999999999999999 99999999999875432111110 1111112222223335567777889999999999999999
Q ss_pred ccccccCCeeEEEEcCCCcEEEEeeCCceeeecCCCc-----------------------cccccCCCcEEEEeec
Q 014125 349 GFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFED-----------------------LHLSGDENCVSVWSFL 401 (430)
Q Consensus 349 ~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~-----------------------l~~~~~d~~i~~w~~~ 401 (430)
.+.+|...|.+++|+|++++|++++.||.+++|+... +.+.++|+.+++|+..
T Consensus 329 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 329 MLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTKSQLNPAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp EECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC---------------------------------------
T ss_pred eeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEeccccccccceeecccCccCceeecCCc
Confidence 9999999999999999999999999988888885432 3455667777777543
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-41 Score=299.90 Aligned_cols=297 Identities=12% Similarity=0.165 Sum_probs=229.1
Q ss_pred eecccCCCceeEEEECcCCc-eEEEecC---CCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecc
Q 014125 54 RTSSIPNNFLKGIKWSPDGS-SFLTSSE---DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFP 129 (430)
Q Consensus 54 ~~~~~h~~~v~~~~~sp~~~-~l~s~~~---dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 129 (430)
+.+.+|.+.|++++|+|++. ++++|+. ||.|+|||+.+++. .......|...|.+++|+|
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~----------------~~~~~~~~~~~v~~~~~~~ 75 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDL----------------KLLREIEKAKPIKCGTFGA 75 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSE----------------EEEEEEEESSCEEEEECTT
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcc----------------cceeeecccCcEEEEEEcC
Confidence 46678999999999999986 4556665 99999999986532 2223446778999999955
Q ss_pred ccCccCCCCceEEEEeCCCcEEEEeccCCc-eeeeeecccccccccceEEEE------ECCCCcEEEE-EcCCeEEEEEc
Q 014125 130 HMSASDPTSCVFASTTRDHPIHLWDATTGL-LRCTYRAYDAVDEITAAFSVA------FNPTGTKIFA-GYNKSVRVFDV 201 (430)
Q Consensus 130 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~v~~~~------~~~~~~~l~~-~~d~~i~v~d~ 201 (430)
. ++++.+|++++.||.|++||+.+++ ....+..+.. .|.++. |+|++.+|++ +.|+.|++||+
T Consensus 76 ~----~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~ 146 (357)
T 3i2n_A 76 T----SLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKE-----IINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDP 146 (357)
T ss_dssp C----CTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSS-----CEEEEEEESGGGCC-CCCEEEEEETTSCEEEECT
T ss_pred C----CCCCceEEEecCCCeEEEEeCCCCCccEEEEEeccc-----ceEEEeeccccccCCCccEEEEEeCCCeEEEEeC
Confidence 3 2337999999999999999999987 7777776655 888885 5788988885 58999999999
Q ss_pred CCCCCcccccccccCCCCCCCcceEEEE----EcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEcc--
Q 014125 202 HRPGRDFEKYSTLKGNKEGQAGIMSAIA----FSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSR-- 275 (430)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~----~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~-- 275 (430)
+........+ ......+...+.+++ |+| ++.++++++.||.|++||+++++.... ..|...|.+++|+|
T Consensus 147 ~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~ 221 (357)
T 3i2n_A 147 RQKDDPVANM---EPVQGENKRDCWTVAFGNAYNQ-EERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKD 221 (357)
T ss_dssp TSCSSCSEEE---CCCTTSCCCCEEEEEEECCCC--CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSS
T ss_pred CCCCCcceec---cccCCCCCCceEEEEEEeccCC-CCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCC
Confidence 8754322222 111122244788888 677 677999999999999999999887554 45889999999999
Q ss_pred -CCCEEEEEecCCCeEEEEeCCCCceEE-EEeecccCCccceEEEEEcCCCC-EEEEEccCCcEEEEEcCCC--------
Q 014125 276 -DGNYLYTGGRKDPYILCWDLRKAVQVV-YKLYRSSEHTNQRILFDIEPSGR-HLGTGGQDGLVHIYDLQTG-------- 344 (430)
Q Consensus 276 -~~~~l~~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~-------- 344 (430)
++.+|++++ .||.|++||+++..... ........|...|.+++|+|+++ +|++++.||.|++||++++
T Consensus 222 ~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 300 (357)
T 3i2n_A 222 ISMNKLVATS-LEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDS 300 (357)
T ss_dssp SSCCEEEEEE-STTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCT
T ss_pred CCCCEEEEEC-CCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccC
Confidence 999999999 99999999997643211 01112247889999999999998 8999999999999999864
Q ss_pred -----------CeecccccccCCeeEEEEcCCCcEEE-EeeCCceeeec
Q 014125 345 -----------KWISGFQAAADTVNGFSFHPFLPMAA-SSSGHRRFPVD 381 (430)
Q Consensus 345 -----------~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~d~~~~vw 381 (430)
+.+..+.+|...|.+++|+|++++|+ +++.|+.+++|
T Consensus 301 ~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw 349 (357)
T 3i2n_A 301 EGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVL 349 (357)
T ss_dssp TSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEE
T ss_pred CCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEE
Confidence 34667788999999999999999888 67754433333
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-41 Score=305.60 Aligned_cols=301 Identities=13% Similarity=0.168 Sum_probs=235.1
Q ss_pred eecccCCCceeEEEECcC----CceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecc
Q 014125 54 RTSSIPNNFLKGIKWSPD----GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFP 129 (430)
Q Consensus 54 ~~~~~h~~~v~~~~~sp~----~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 129 (430)
....+|.+.|++++|+|+ ...+++++.++.|++||+.+++....+... ....+...|.+++|+|
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~------------~~~~~~~~v~~~~~~~ 79 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSY------------VDADADENFYTCAWTY 79 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEE------------ECSCTTCCEEEEEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeec------------cccCCCCcEEEEEecc
Confidence 466799999999999984 445666666779999999865432221111 1112567899999966
Q ss_pred ccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECC-CCcEEEE-EcCCeEEEEEcCCCCCc
Q 014125 130 HMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNP-TGTKIFA-GYNKSVRVFDVHRPGRD 207 (430)
Q Consensus 130 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~-~~d~~i~v~d~~~~~~~ 207 (430)
.. .+++.+|++|+.||.|++||+.+++.+..+..+.. .|.+++|+| ++.+|++ +.|+.|++||++.....
T Consensus 80 ~~---~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 151 (366)
T 3k26_A 80 DS---NTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGN-----AINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLV 151 (366)
T ss_dssp CT---TTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCS-----CEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEE
T ss_pred CC---CCCCCEEEEecCCCEEEEEEchhceEeeeecCCCC-----cEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEE
Confidence 31 12277999999999999999999999888876665 999999999 8888885 58999999999764211
Q ss_pred ccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEee-------------------------
Q 014125 208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH------------------------- 262 (430)
Q Consensus 208 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~------------------------- 262 (430)
.......+|...|.+++|+| ++.+|++++.||.|++||+++++....+.
T Consensus 152 -----~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (366)
T 3k26_A 152 -----AIFGGVEGHRDEVLSADYDL-LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFS 225 (366)
T ss_dssp -----EEECSTTSCSSCEEEEEECT-TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEE
T ss_pred -----EEecccccccCceeEEEECC-CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccc
Confidence 11111257888999999999 67799999999999999999876544333
Q ss_pred ---ccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCce----------EEEEeecccCCccceEEEEEcCC--CCEE
Q 014125 263 ---GQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQ----------VVYKLYRSSEHTNQRILFDIEPS--GRHL 327 (430)
Q Consensus 263 ---~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~----------~~~~~~~~~~~~~~v~~~~~~~~--~~~l 327 (430)
.|...|.+++|+ +++|++++ .|+.|++||+++... ..........|...|.+++|+|+ +++|
T Consensus 226 ~~~~~~~~v~~~~~~--~~~l~~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l 302 (366)
T 3k26_A 226 TRDIHRNYVDCVRWL--GDLILSKS-CENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKML 302 (366)
T ss_dssp ECSSCSSCCCEEEEE--TTEEEEEC-SSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEE
T ss_pred cccCCcceEEEEEEc--CCEEEEEe-cCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEE
Confidence 388999999998 77999998 999999999987643 11122333567888999999999 9999
Q ss_pred EEEccCCcEEEEEcCCCCeec----ccccc--cCCeeEEEEcCCCcEEEEeeCCceeeecCC
Q 014125 328 GTGGQDGLVHIYDLQTGKWIS----GFQAA--ADTVNGFSFHPFLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 328 ~~~~~dg~i~vwd~~~~~~~~----~~~~~--~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~ 383 (430)
++|+.||.|++||+.+++... .+.+| ...|.+++|+|++++|++++.||.|++|+.
T Consensus 303 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 364 (366)
T 3k26_A 303 ALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDR 364 (366)
T ss_dssp EEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred EEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence 999999999999999987544 67777 689999999999999999997665555544
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-40 Score=299.43 Aligned_cols=298 Identities=16% Similarity=0.203 Sum_probs=238.4
Q ss_pred ecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCcc
Q 014125 55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS 134 (430)
Q Consensus 55 ~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 134 (430)
.+..|.++|++++|+|++++|++|+.|+.|++||+.+++. ........|...|.+++|
T Consensus 3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~---------------~~~~~~~~h~~~v~~~~~------- 60 (372)
T 1k8k_C 3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW---------------VQVHELKEHNGQVTGVDW------- 60 (372)
T ss_dssp EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE---------------EEEEEEECCSSCEEEEEE-------
T ss_pred eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcE---------------EeeeeecCCCCcccEEEE-------
Confidence 3456999999999999999999999999999999876520 011223357789999999
Q ss_pred CCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCCccccccc
Q 014125 135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFEKYST 213 (430)
Q Consensus 135 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~ 213 (430)
+|++++|++++.||.|++||+.+++......... +...|.+++|+|++.+|++ +.|+.|++||++...... .
T Consensus 61 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~----~ 133 (372)
T 1k8k_C 61 APDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILR---INRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWW----V 133 (372)
T ss_dssp ETTTTEEEEEETTSCEEEEEEETTEEEEEEECCC---CSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEE----E
T ss_pred eCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeec---CCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcce----e
Confidence 6689999999999999999999887655543321 2338999999999999985 489999999998743211 1
Q ss_pred ccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEc------------------CCceeeEEeeccccCeEEEEEcc
Q 014125 214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRE------------------DNMELLYVLHGQEGGVTHVQFSR 275 (430)
Q Consensus 214 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~------------------~~~~~~~~~~~~~~~i~~~~~~~ 275 (430)
......+|...|.+++|+| ++.+|++++.||.|++||+ ..++.+..+..|...|.+++|+|
T Consensus 134 ~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 212 (372)
T 1k8k_C 134 CKHIKKPIRSTVLSLDWHP-NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA 212 (372)
T ss_dssp EEEECTTCCSCEEEEEECT-TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECS
T ss_pred eeeeecccCCCeeEEEEcC-CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECC
Confidence 1112256778899999999 6779999999999999995 46778888888999999999999
Q ss_pred CCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCC--CCe-------
Q 014125 276 DGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQT--GKW------- 346 (430)
Q Consensus 276 ~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~--~~~------- 346 (430)
++++|++++ .|+.|++||+++..... .+ ..|...+.+++|+|++.+|++| .|+.|++|++.+ ++.
T Consensus 213 ~~~~l~~~~-~d~~i~i~d~~~~~~~~-~~---~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~ 286 (372)
T 1k8k_C 213 NGSRVAWVS-HDSTVCLADADKKMAVA-TL---ASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLD 286 (372)
T ss_dssp SSSEEEEEE-TTTEEEEEEGGGTTEEE-EE---ECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCC
T ss_pred CCCEEEEEe-CCCEEEEEECCCCceeE-EE---ccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccC
Confidence 999999999 99999999999875442 22 4677899999999999988888 899999999987 421
Q ss_pred -------------------------e------ccc-ccccCCeeEEEEc-CCC---cEEEEeeCCceeeecCCCcccccc
Q 014125 347 -------------------------I------SGF-QAAADTVNGFSFH-PFL---PMAASSSGHRRFPVDDFEDLHLSG 390 (430)
Q Consensus 347 -------------------------~------~~~-~~~~~~v~~~~~~-~~~---~~l~s~~~d~~~~vw~~~~l~~~~ 390 (430)
. ..+ .+|...|++++|+ +++ .+|++++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~----------------- 349 (372)
T 1k8k_C 287 VPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTG----------------- 349 (372)
T ss_dssp CC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEE-----------------
T ss_pred ccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEec-----------------
Confidence 0 223 4899999999977 666 8888887
Q ss_pred CCCcEEEEeeccccc
Q 014125 391 DENCVSVWSFLYASM 405 (430)
Q Consensus 391 ~d~~i~~w~~~~~~~ 405 (430)
.||.|++|++...+.
T Consensus 350 ~Dg~i~~W~~~~~~~ 364 (372)
T 1k8k_C 350 MDGGMSIWDVRSLES 364 (372)
T ss_dssp TTSEEEEEEHHHHHH
T ss_pred CCCceEEEEecChhH
Confidence 577888888776443
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-41 Score=306.07 Aligned_cols=285 Identities=16% Similarity=0.248 Sum_probs=237.3
Q ss_pred CCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCC
Q 014125 59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS 138 (430)
Q Consensus 59 h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 138 (430)
|.+.|++++|+|++++|++|+.||.|++||.. +. .......|...|.+++| +|++
T Consensus 107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~-~~-----------------~~~~~~~~~~~v~~~~~-------~~~~ 161 (425)
T 1r5m_A 107 TTNQVTCLAWSHDGNSIVTGVENGELRLWNKT-GA-----------------LLNVLNFHRAPIVSVKW-------NKDG 161 (425)
T ss_dssp -CBCEEEEEECTTSSEEEEEETTSCEEEEETT-SC-----------------EEEEECCCCSCEEEEEE-------CTTS
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEeCC-CC-----------------eeeeccCCCccEEEEEE-------CCCC
Confidence 68899999999999999999999999999943 21 11233356789999999 7789
Q ss_pred ceEEEEeCCCcEEEEeccCCceeeeeecccccc----------cccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcc
Q 014125 139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVD----------EITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDF 208 (430)
Q Consensus 139 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~ 208 (430)
.+|++++.||.|++||+.+++....+..+.... ....+.+++|+|++.+++++.++.|++||+.....
T Consensus 162 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~-- 239 (425)
T 1r5m_A 162 THIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTP-- 239 (425)
T ss_dssp SEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSC--
T ss_pred CEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCce--
Confidence 999999999999999999998888777655410 00118899999998877777999999999987421
Q ss_pred cccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCC
Q 014125 209 EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDP 288 (430)
Q Consensus 209 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~ 288 (430)
......|...|.+++|+| ++.+|++++.|+.|++||+++++....+..|...|.+++|+|++ .+++++ .|+
T Consensus 240 ------~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~-~d~ 310 (425)
T 1r5m_A 240 ------TGKLIGHHGPISVLEFND-TNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCS-MDG 310 (425)
T ss_dssp ------SEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEE-TTS
T ss_pred ------eeeeccCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEe-CCC
Confidence 222356788999999999 66799999999999999999999999999999999999999999 888888 999
Q ss_pred eEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCC--------------------eec
Q 014125 289 YILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGK--------------------WIS 348 (430)
Q Consensus 289 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--------------------~~~ 348 (430)
.|++||+++..... .+ ..|...+.+++|+|++++|++++.||.|++||+.+++ .+.
T Consensus 311 ~i~i~d~~~~~~~~-~~---~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (425)
T 1r5m_A 311 SVRLWSLKQNTLLA-LS---IVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYA 386 (425)
T ss_dssp EEEEEETTTTEEEE-EE---ECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEE
T ss_pred cEEEEECCCCcEeE-ec---ccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhh
Confidence 99999999875332 22 4678899999999999999999999999999999887 888
Q ss_pred ccccccC--CeeEEEEcCCCcEEEEeeCCceeeecCC
Q 014125 349 GFQAAAD--TVNGFSFHPFLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 349 ~~~~~~~--~v~~~~~~~~~~~l~s~~~d~~~~vw~~ 383 (430)
.+..|.. .|.+++|+|++++|++++.||.+++|+.
T Consensus 387 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 423 (425)
T 1r5m_A 387 SYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAI 423 (425)
T ss_dssp EECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEEC
T ss_pred hhcCcccCCceEEEEccCCCceEEEEecCceEEEEee
Confidence 8998976 9999999999999999987655555543
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=329.19 Aligned_cols=212 Identities=11% Similarity=0.092 Sum_probs=173.6
Q ss_pred cccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccC
Q 014125 56 SSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASD 135 (430)
Q Consensus 56 ~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 135 (430)
..+|.+.|++++|+|++++||+|+.||+|+||+..+.+. .....|...|.+++| +
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~------------------~~~~~~~~~V~~l~f-------s 67 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEV------------------VIKLEDRSAIKEMRF-------V 67 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEE------------------EEECSSCCCEEEEEE-------E
T ss_pred ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEE------------------EEEcCCCCCEEEEEE-------c
Confidence 358999999999999999999999999999999864321 122345678999999 6
Q ss_pred CCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccccccc
Q 014125 136 PTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTL 214 (430)
Q Consensus 136 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~ 214 (430)
| +++|++++.|++|++||+.+++.+..+... ..|.+++|+|++.++++| .||.|++||++............
T Consensus 68 p-g~~L~S~s~D~~v~lWd~~~~~~~~~~~~~------~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~ 140 (902)
T 2oaj_A 68 K-GIYLVVINAKDTVYVLSLYSQKVLTTVFVP------GKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNL 140 (902)
T ss_dssp T-TTEEEEEETTCEEEEEETTTCSEEEEEECS------SCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCH
T ss_pred C-CCEEEEEECcCeEEEEECCCCcEEEEEcCC------CCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccc
Confidence 6 669999999999999999999888777522 289999999999999955 89999999998642110000000
Q ss_pred c---CCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeecc------------------ccCeEEEEE
Q 014125 215 K---GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ------------------EGGVTHVQF 273 (430)
Q Consensus 215 ~---~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~------------------~~~i~~~~~ 273 (430)
. ....+|...|.+++|+|++...+++|+.||.| +||+++++.+..+..| ...|++++|
T Consensus 141 ~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~f 219 (902)
T 2oaj_A 141 QKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLY 219 (902)
T ss_dssp HHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEE
T ss_pred cccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEE
Confidence 0 23467889999999999767799999999999 9999999888877655 467999999
Q ss_pred ccCCCEEEEEecCCCeEEEEeCCCCceE
Q 014125 274 SRDGNYLYTGGRKDPYILCWDLRKAVQV 301 (430)
Q Consensus 274 ~~~~~~l~~~~~~d~~i~i~d~~~~~~~ 301 (430)
+|+|++|++++ .||.|++||++++...
T Consensus 220 spdg~~lasgs-~Dg~i~lWd~~~g~~~ 246 (902)
T 2oaj_A 220 HPNSLHIITIH-EDNSLVFWDANSGHMI 246 (902)
T ss_dssp CTTSSEEEEEE-TTCCEEEEETTTCCEE
T ss_pred cCCCCEEEEEE-CCCeEEEEECCCCcEE
Confidence 99999999999 9999999999887543
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-40 Score=341.73 Aligned_cols=326 Identities=14% Similarity=0.185 Sum_probs=276.8
Q ss_pred eecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCc
Q 014125 54 RTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (430)
Q Consensus 54 ~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (430)
..+.+|.+.|++++|+|+|++||+|+.||+|++||+.+++... ....|...|.+++|
T Consensus 609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~-----------------~~~~h~~~v~~~~~------ 665 (1249)
T 3sfz_A 609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL-----------------DIKAHEDEVLCCAF------ 665 (1249)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE-----------------EECCCSSCEEEEEE------
T ss_pred EEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEE-----------------EeccCCCCEEEEEE------
Confidence 4678999999999999999999999999999999998764322 22356689999999
Q ss_pred cCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCC--CcEEEE-EcCCeEEEEEcCCCCCcccc
Q 014125 134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT--GTKIFA-GYNKSVRVFDVHRPGRDFEK 210 (430)
Q Consensus 134 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~-~~d~~i~v~d~~~~~~~~~~ 210 (430)
+|++++|++++.||.|++||+.+++.+..+..+.. .|.+++|+|+ +.++++ +.|+.|++||++.+.
T Consensus 666 -s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~----- 734 (1249)
T 3sfz_A 666 -SSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSE-----QVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE----- 734 (1249)
T ss_dssp -CTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSS-----CEEEEEECSSSSCCEEEEEETTSCEEEEETTSSS-----
T ss_pred -ecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCC-----cEEEEEEecCCCceEEEEEeCCCeEEEEECCCcc-----
Confidence 77899999999999999999999999998887765 8999999995 456664 589999999998742
Q ss_pred cccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeec-------------cccCeEEEEEccCC
Q 014125 211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG-------------QEGGVTHVQFSRDG 277 (430)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~-------------~~~~i~~~~~~~~~ 277 (430)
......+|...|++++|+| ++.++++++.||.|++||+++++....+.. +...+.+++|+|+|
T Consensus 735 ---~~~~~~~h~~~v~~~~~sp-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 810 (1249)
T 3sfz_A 735 ---CRNTMFGHTNSVNHCRFSP-DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADG 810 (1249)
T ss_dssp ---EEEEECCCSSCEEEEEECS-STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTS
T ss_pred ---hhheecCCCCCEEEEEEec-CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCC
Confidence 2223357889999999999 677999999999999999998877665532 12368899999999
Q ss_pred CEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCe
Q 014125 278 NYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTV 357 (430)
Q Consensus 278 ~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v 357 (430)
+.+++++ ++.+.+||+.+........ .+|...+.+++|+|+++++++++.||.|++||+.++..+..+.+|...|
T Consensus 811 ~~l~~~~--~~~v~~~d~~~~~~~~~~~---~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v 885 (1249)
T 3sfz_A 811 DKIIVAA--KNKVLLFDIHTSGLLAEIH---TGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWV 885 (1249)
T ss_dssp SEEEEEE--TTEEEEEETTTCCEEEEEE---CSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCE
T ss_pred CEEEEEc--CCcEEEEEecCCCceeEEc---CCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccce
Confidence 9999887 7899999999886544332 4788999999999999999999999999999999999999999999999
Q ss_pred eEEEEcCCCcEEEEeeCCceeeecCCC-----------------------------------------------------
Q 014125 358 NGFSFHPFLPMAASSSGHRRFPVDDFE----------------------------------------------------- 384 (430)
Q Consensus 358 ~~~~~~~~~~~l~s~~~d~~~~vw~~~----------------------------------------------------- 384 (430)
.+++|+|++++|++++.|+.+++|+..
T Consensus 886 ~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 965 (1249)
T 3sfz_A 886 HGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVS 965 (1249)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEE
T ss_pred EEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEE
Confidence 999999999999999999999999632
Q ss_pred ---------ccccccCCCcEEEEeecccccccccCCCCcceeeeeccC
Q 014125 385 ---------DLHLSGDENCVSVWSFLYASMMENADGINGCEFNCQSEH 423 (430)
Q Consensus 385 ---------~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (430)
.+++++.||.|++|++..+.....+.+|.+ .+.++...
T Consensus 966 ~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~-~v~~l~~s 1012 (1249)
T 3sfz_A 966 CCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKK-AVRHIQFT 1012 (1249)
T ss_dssp EEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSS-CCCCEEEC
T ss_pred EEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCC-ceEEEEEC
Confidence 367788999999999999988888887766 44444443
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-40 Score=291.37 Aligned_cols=250 Identities=19% Similarity=0.281 Sum_probs=212.1
Q ss_pred eeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-c
Q 014125 114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-Y 192 (430)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~ 192 (430)
...+|...|++++| +|++.+|++|+.||+|++||..+++....+..+.. .|.+++|+|++.+++++ .
T Consensus 59 ~l~gH~~~V~~~~~-------s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~-----~v~~~~~sp~g~~lasg~~ 126 (354)
T 2pbi_B 59 TLKGHGNKVLCMDW-------CKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCT-----WVMACAYAPSGCAIACGGL 126 (354)
T ss_dssp EEECCSSCEEEEEE-------CTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSS-----CCCEEEECTTSSEEEEEST
T ss_pred EecCCCCeEEEEEE-------CCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCC-----CEEEEEECCCCCEEEEeeC
Confidence 44568899999999 77899999999999999999999988887776654 88999999999999965 8
Q ss_pred CCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEE
Q 014125 193 NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQ 272 (430)
Q Consensus 193 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~ 272 (430)
|+.+++|++........ ........+|...|.+++|+| ++..|++++.|++|++||+++++.+..+.+|...|.+++
T Consensus 127 d~~i~v~~~~~~~~~~~--~~~~~~~~~h~~~v~~~~~~~-~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~ 203 (354)
T 2pbi_B 127 DNKCSVYPLTFDKNENM--AAKKKSVAMHTNYLSACSFTN-SDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLD 203 (354)
T ss_dssp TSEEEEEECCCCTTCCS--GGGCEEEEECSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred CCCEEEEEEeccccccc--cccceeeeccCCcEEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEE
Confidence 99999999875322111 112223356888999999999 667899999999999999999999999999999999999
Q ss_pred Ecc--CCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccc
Q 014125 273 FSR--DGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGF 350 (430)
Q Consensus 273 ~~~--~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 350 (430)
|+| ++.+|++++ .||.|++||++++.... .+ ..|...|.+++|+|++.+|++|+.|+.|++||+++++.+..+
T Consensus 204 ~~~~~~g~~l~sgs-~Dg~v~~wd~~~~~~~~-~~---~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~ 278 (354)
T 2pbi_B 204 LAPSETGNTFVSGG-CDKKAMVWDMRSGQCVQ-AF---ETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIY 278 (354)
T ss_dssp ECCCSSCCEEEEEE-TTSCEEEEETTTCCEEE-EE---CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred EEeCCCCCEEEEEe-CCCeEEEEECCCCcEEE-Ee---cCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence 987 568999999 99999999999875432 22 578899999999999999999999999999999988776665
Q ss_pred ccc--cCCeeEEEEcCCCcEEEEeeCCceeeecCC
Q 014125 351 QAA--ADTVNGFSFHPFLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 351 ~~~--~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~ 383 (430)
..+ ...+.+++|+|++.+|++++.|+.+++||.
T Consensus 279 ~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~ 313 (354)
T 2pbi_B 279 SKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDV 313 (354)
T ss_dssp CCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred cCCCcccceeEEEEeCCCCEEEEEECCCcEEEEEC
Confidence 533 347899999999999999998888888854
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-40 Score=301.79 Aligned_cols=298 Identities=12% Similarity=0.127 Sum_probs=231.8
Q ss_pred cccCCCceeEEEECcCCc-eEEEecCCCeEEEEeC----CCCCCcccccccccccccCcccceeeecCCCeeeeeeeccc
Q 014125 56 SSIPNNFLKGIKWSPDGS-SFLTSSEDKTLRIFSL----PENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH 130 (430)
Q Consensus 56 ~~~h~~~v~~~~~sp~~~-~l~s~~~dg~v~iw~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 130 (430)
...|.+.|++++|+|+|+ +||+|+.||.|++|++ .+++............. ..........|...|.+++|
T Consensus 41 ~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~--- 116 (425)
T 1r5m_A 41 EIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRH-PFALSASSGKTTNQVTCLAW--- 116 (425)
T ss_dssp EEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEEC-CCCCC------CBCEEEEEE---
T ss_pred eeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccc-cccccccccCCCCceEEEEE---
Confidence 345668999999999999 9999999999999999 76652111000000000 00000011235679999999
Q ss_pred cCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCccc
Q 014125 131 MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFE 209 (430)
Q Consensus 131 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~ 209 (430)
+|++.+|++++.||.|++|| .+++....+..+.. .|.+++|+|++.+|+ ++.|+.|++||+......
T Consensus 117 ----s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-- 184 (425)
T 1r5m_A 117 ----SHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRA-----PIVSVKWNKDGTHIISMDVENVTILWNVISGTVM-- 184 (425)
T ss_dssp ----CTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCS-----CEEEEEECTTSSEEEEEETTCCEEEEETTTTEEE--
T ss_pred ----cCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCc-----cEEEEEECCCCCEEEEEecCCeEEEEECCCCcEE--
Confidence 77899999999999999999 66777777776654 899999999999888 458999999999764211
Q ss_pred ccccccCCCCCCCcc---------------eEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEc
Q 014125 210 KYSTLKGNKEGQAGI---------------MSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFS 274 (430)
Q Consensus 210 ~~~~~~~~~~~~~~~---------------v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~ 274 (430)
.. ...+... +.+++|+| + ..+++++.+|.|++||+++++.+..+..|...|.+++|+
T Consensus 185 --~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~ 256 (425)
T 1r5m_A 185 --QH----FELKETGGSSINAENHSGDGSLGVDVEWVD-D-DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFN 256 (425)
T ss_dssp --EE----ECCC---------------CCCBSCCEEEE-T-TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEE
T ss_pred --EE----eeccccCccceeeccccCCcceeeEEEEcC-C-CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEEC
Confidence 11 1122222 88899998 4 368899999999999999999998999999999999999
Q ss_pred cCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccccccc
Q 014125 275 RDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAA 354 (430)
Q Consensus 275 ~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 354 (430)
|++++|++++ .|+.|++||+++..... .+ ..|...+.+++|+|++ ++++++.||.|++||+.+++.+..+..|.
T Consensus 257 ~~~~~l~~~~-~d~~i~i~d~~~~~~~~-~~---~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 330 (425)
T 1r5m_A 257 DTNKLLLSAS-DDGTLRIWHGGNGNSQN-CF---YGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDG 330 (425)
T ss_dssp TTTTEEEEEE-TTSCEEEECSSSBSCSE-EE---CCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTT
T ss_pred CCCCEEEEEc-CCCEEEEEECCCCccce-Ee---cCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCC
Confidence 9999999999 99999999998865432 22 4688899999999999 99999999999999999999999999999
Q ss_pred CCeeEEEEcCCCcEEEEeeCCceeeecCC
Q 014125 355 DTVNGFSFHPFLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 355 ~~v~~~~~~~~~~~l~s~~~d~~~~vw~~ 383 (430)
..|.+++|+|++++|++++.|+.+++|+.
T Consensus 331 ~~i~~~~~s~~~~~l~~~~~dg~i~i~~~ 359 (425)
T 1r5m_A 331 VPIFAGRISQDGQKYAVAFMDGQVNVYDL 359 (425)
T ss_dssp CCEEEEEECTTSSEEEEEETTSCEEEEEC
T ss_pred ccEEEEEEcCCCCEEEEEECCCeEEEEEC
Confidence 99999999999999999986655555543
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-40 Score=286.27 Aligned_cols=291 Identities=16% Similarity=0.185 Sum_probs=236.1
Q ss_pred ecceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecc
Q 014125 50 YNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFP 129 (430)
Q Consensus 50 ~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 129 (430)
++..+.+.+|.+.|++++| |++++|++|+.||.|++||+.++.. ......|...|.+++|
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~-----------------~~~~~~~~~~v~~~~~-- 67 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWL-----------------GTVVYTGQGFLNSVCY-- 67 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEE-----------------EEEEEECSSCEEEEEE--
T ss_pred HHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEE-----------------EEEeecCCccEEEEEE--
Confidence 3456788999999999999 9999999999999999999875422 2233456789999999
Q ss_pred ccCccCCCCceEEEEeCCCcEEEEeccCC---ceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCC
Q 014125 130 HMSASDPTSCVFASTTRDHPIHLWDATTG---LLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPG 205 (430)
Q Consensus 130 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~ 205 (430)
+|++.+|++++.||.|++|++... +....+..+.. .|.+++| ++.+++ ++.|+.|++||..
T Consensus 68 -----~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~-----~i~~~~~--~~~~l~~~~~d~~i~~~d~~--- 132 (313)
T 3odt_A 68 -----DSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQG-----NVCSLSF--QDGVVISGSWDKTAKVWKEG--- 132 (313)
T ss_dssp -----ETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSS-----CEEEEEE--ETTEEEEEETTSEEEEEETT---
T ss_pred -----CCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhccc-----CEEEEEe--cCCEEEEEeCCCCEEEEcCC---
Confidence 668999999999999999998765 34455554443 8999999 455666 5699999999921
Q ss_pred CcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeec-cccCeEEEEEccCCCEEEEEe
Q 014125 206 RDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG-QEGGVTHVQFSRDGNYLYTGG 284 (430)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~ 284 (430)
........|...+.++.|.|.++..+++++.||.|++|| ..+....+.. |...+.+++|+|++. +++++
T Consensus 133 -------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~ 202 (313)
T 3odt_A 133 -------SLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCS 202 (313)
T ss_dssp -------EEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEE
T ss_pred -------cEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEcc
Confidence 122223567888999999986778999999999999999 4455666666 889999999999998 88888
Q ss_pred cCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcC
Q 014125 285 RKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHP 364 (430)
Q Consensus 285 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 364 (430)
.||.|++||+++..... .+ ..|...+.+++|+|++ .|++++.||.|++||+.+++.+..+..|...|.+++|+|
T Consensus 203 -~dg~i~i~d~~~~~~~~-~~---~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~ 276 (313)
T 3odt_A 203 -NDGLIKLVDMHTGDVLR-TY---EGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMS 276 (313)
T ss_dssp -TTSEEEEEETTTCCEEE-EE---ECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECT
T ss_pred -CCCeEEEEECCchhhhh-hh---hcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEcc
Confidence 99999999999875432 22 4688999999999999 688999999999999999999999999999999999999
Q ss_pred CCcEEEEeeCCceeeecCCCccccccCCCcEEEEeeccccccccc
Q 014125 365 FLPMAASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYASMMENA 409 (430)
Q Consensus 365 ~~~~l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~~~~~~ 409 (430)
+++++ +++ .|+.|++|++..++.....
T Consensus 277 ~~~~~-~~~-----------------~dg~i~iw~~~~~~~~~~~ 303 (313)
T 3odt_A 277 NGDII-VGS-----------------SDNLVRIFSQEKSRWASED 303 (313)
T ss_dssp TSCEE-EEE-----------------TTSCEEEEESCGGGCCC--
T ss_pred CCCEE-EEe-----------------CCCcEEEEeCCCCceeehh
Confidence 99844 555 4788888888877665443
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-41 Score=305.35 Aligned_cols=298 Identities=14% Similarity=0.226 Sum_probs=233.4
Q ss_pred ccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCC
Q 014125 57 SIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP 136 (430)
Q Consensus 57 ~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 136 (430)
..|...|++++|+|++++|++|+.||.|++|++.+.... .........|...|.+++| +|
T Consensus 64 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~-------------~~~~~~~~~h~~~v~~~~~-------~~ 123 (416)
T 2pm9_A 64 LQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNA-------------INSMARFSNHSSSVKTVKF-------NA 123 (416)
T ss_dssp CCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSC-------------CCEEEECCCSSSCCCEEEE-------CS
T ss_pred EecCCceEEEEECCCCCeEEEEccCCeEEEeeccccccc-------------ccchhhccCCccceEEEEE-------cC
Confidence 368899999999999999999999999999999862110 1122233457789999999 66
Q ss_pred C-CceEEEEeCCCcEEEEeccCCc------eeeeeecccccccccceEEEEECCC-CcEEEEE-cCCeEEEEEcCCCCCc
Q 014125 137 T-SCVFASTTRDHPIHLWDATTGL------LRCTYRAYDAVDEITAAFSVAFNPT-GTKIFAG-YNKSVRVFDVHRPGRD 207 (430)
Q Consensus 137 ~-~~~l~~~~~dg~i~vwd~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~-~d~~i~v~d~~~~~~~ 207 (430)
+ +.+|++++.||.|++||+.+++ ....+. ....+...|.+++|+|+ +.+++++ .|+.|++||++.....
T Consensus 124 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~ 201 (416)
T 2pm9_A 124 KQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPG--QSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEV 201 (416)
T ss_dssp SSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCC--CSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEE
T ss_pred CCCCEEEEEcCCCeEEEEECCCCccccccccccccc--cccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcc
Confidence 6 8899999999999999999876 322221 11234448999999999 6777755 8999999999874221
Q ss_pred ccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCC---eEEEEEcCCc-eeeEEee-ccccCeEEEEEcc-CCCEEE
Q 014125 208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ---TSAIYREDNM-ELLYVLH-GQEGGVTHVQFSR-DGNYLY 281 (430)
Q Consensus 208 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---~v~~~d~~~~-~~~~~~~-~~~~~i~~~~~~~-~~~~l~ 281 (430)
. .. .......+|...+.+++|+|++..++++++.|+ .|++||++++ .....+. +|...|.+++|+| ++++|+
T Consensus 202 ~-~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~ 279 (416)
T 2pm9_A 202 I-HL-SYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLL 279 (416)
T ss_dssp E-EE-CCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEE
T ss_pred e-EE-eccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEE
Confidence 1 11 111112334788999999997778999999999 9999999986 6677777 8999999999999 899999
Q ss_pred EEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCC-CEEEEEccCCcEEEEEcCCCCeeccccc--------
Q 014125 282 TGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSG-RHLGTGGQDGLVHIYDLQTGKWISGFQA-------- 352 (430)
Q Consensus 282 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~-------- 352 (430)
+++ .|+.|++||+++..... .+ ..|...|.+++|+|++ .+|++++.||.|++||+.+++.......
T Consensus 280 s~~-~dg~v~~wd~~~~~~~~-~~---~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~ 354 (416)
T 2pm9_A 280 SSG-RDNTVLLWNPESAEQLS-QF---PARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQES 354 (416)
T ss_dssp EEE-SSSEEEEECSSSCCEEE-EE---ECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------
T ss_pred EEe-CCCCEEEeeCCCCccce-ee---cCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCC
Confidence 999 99999999999875432 22 4688899999999999 8999999999999999987764433211
Q ss_pred ---------------------------ccCCeeEEEEcCCCcEEEEeeCCceeeecCC
Q 014125 353 ---------------------------AADTVNGFSFHPFLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 353 ---------------------------~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~ 383 (430)
|..++.+++|+|+|++|++++.|+.|+||+.
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~ 412 (416)
T 2pm9_A 355 ETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNP 412 (416)
T ss_dssp ------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCC
T ss_pred cccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEe
Confidence 5667889999999999999987666666654
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-40 Score=340.32 Aligned_cols=334 Identities=18% Similarity=0.212 Sum_probs=275.6
Q ss_pred ceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecccc
Q 014125 52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (430)
Q Consensus 52 ~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (430)
....+.+|.+.|++++|+|+|++||+|+.||.|+|||+.+++... ....|...|.+++|+|
T Consensus 649 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~-----------------~~~~~~~~v~~~~~~~-- 709 (1249)
T 3sfz_A 649 KLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVH-----------------TYDEHSEQVNCCHFTN-- 709 (1249)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE-----------------EEECCSSCEEEEEECS--
T ss_pred EEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEE-----------------EEcCCCCcEEEEEEec--
Confidence 345778999999999999999999999999999999998764322 2335668999999955
Q ss_pred CccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCCcccc
Q 014125 132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFEK 210 (430)
Q Consensus 132 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~~~ 210 (430)
..++.++++|+.||.|++||+.+++....+..+.. .|.+++|+|++.++++ +.||.|++||+.........
T Consensus 710 ---~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~-----~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~ 781 (1249)
T 3sfz_A 710 ---KSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTN-----SVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSI 781 (1249)
T ss_dssp ---SSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSS-----CEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEE
T ss_pred ---CCCceEEEEEeCCCeEEEEECCCcchhheecCCCC-----CEEEEEEecCCCEEEEEECCCeEEEEeCCCCccccee
Confidence 23567899999999999999999998888877665 8999999999999985 58999999998753211000
Q ss_pred c-----------------------------------------------ccccCCCCCCCcceEEEEEcCCCCceEEEecC
Q 014125 211 Y-----------------------------------------------STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY 243 (430)
Q Consensus 211 ~-----------------------------------------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 243 (430)
. ........+|...+.+++|+| ++.++++++.
T Consensus 782 ~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~ 860 (1249)
T 3sfz_A 782 NVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSP-YDHLAVIALS 860 (1249)
T ss_dssp ECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECS-STTEEEEECS
T ss_pred cccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcC-CCCEEEEEeC
Confidence 0 000001126778899999999 6779999999
Q ss_pred CCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCce-------------------EEE-
Q 014125 244 SQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQ-------------------VVY- 303 (430)
Q Consensus 244 dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~-------------------~~~- 303 (430)
+|.|++||+.++..+..+.+|...|.+++|+|++++|++++ .||.|++||+.+... ...
T Consensus 861 dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s-~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 939 (1249)
T 3sfz_A 861 QYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTAS-DDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLA 939 (1249)
T ss_dssp SSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEE
T ss_pred CCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEe-CCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEE
Confidence 99999999999999999999999999999999999999999 999999999753100 000
Q ss_pred --------Eeec-----ccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEE
Q 014125 304 --------KLYR-----SSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAA 370 (430)
Q Consensus 304 --------~~~~-----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 370 (430)
.... .......+.+++|+|+++++++|+.||.|++||+.+++.+..+.+|...|.+++|+|++++|+
T Consensus 940 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~ 1019 (1249)
T 3sfz_A 940 VDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLI 1019 (1249)
T ss_dssp EESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEE
T ss_pred ecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEE
Confidence 0000 011345789999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCceeeecCCCc-----------------------cccccCCCcEEEEeecccccccccCCCCc
Q 014125 371 SSSGHRRFPVDDFED-----------------------LHLSGDENCVSVWSFLYASMMENADGING 414 (430)
Q Consensus 371 s~~~d~~~~vw~~~~-----------------------l~~~~~d~~i~~w~~~~~~~~~~~~~~~~ 414 (430)
+++.|+.+++|+... +++++.|+.|++|++..++....+.+|.+
T Consensus 1020 s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~ 1086 (1249)
T 3sfz_A 1020 SSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQG 1086 (1249)
T ss_dssp EECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSS
T ss_pred EEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCC
Confidence 999999999996532 67889999999999999988888877765
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-40 Score=294.91 Aligned_cols=302 Identities=10% Similarity=0.031 Sum_probs=214.3
Q ss_pred CceeEEEECcCCceEEEecCCC-------eEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccC-
Q 014125 61 NFLKGIKWSPDGSSFLTSSEDK-------TLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS- 132 (430)
Q Consensus 61 ~~v~~~~~sp~~~~l~s~~~dg-------~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~- 132 (430)
-+|++++|+|||++|++||.|. .|++|++............ .........+...|.++++.+...
T Consensus 15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~-------~~~~~~l~~~~~~v~s~~~~~~~~~ 87 (365)
T 4h5i_A 15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFH-------ILSEFALEDNDDSPTAIDASKGIIL 87 (365)
T ss_dssp SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEE-------EEEEEECCTTSCCCCEEEEETTEEE
T ss_pred CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeee-------eeeEEEccCCCCceEEEEeCCCEEE
Confidence 4799999999999999997643 5999998765432111100 000011223455677776633211
Q ss_pred -ccCCCCceEEEEeCCCcEEEEeccCCceeee----eecccccccccceEEEEECCCCcEEE-EE--cCCeEEEEEcCCC
Q 014125 133 -ASDPTSCVFASTTRDHPIHLWDATTGLLRCT----YRAYDAVDEITAAFSVAFNPTGTKIF-AG--YNKSVRVFDVHRP 204 (430)
Q Consensus 133 -~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~-~~--~d~~i~v~d~~~~ 204 (430)
..+.++..|++++.|+.+++|++........ ............+.+++|+|||++++ ++ .|+.|++||+.+.
T Consensus 88 ~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~ 167 (365)
T 4h5i_A 88 VGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDL 167 (365)
T ss_dssp EECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTT
T ss_pred EEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCC
Confidence 1122333444556788899999876543221 12222222333578999999999887 33 6899999999764
Q ss_pred CCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeE--EeeccccCeEEEEEccCCCEEEE
Q 014125 205 GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLY--VLHGQEGGVTHVQFSRDGNYLYT 282 (430)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~ 282 (430)
... .. ..|...|.+++|+| ++.++++++. +.+.+|+..+++... ....|...|.+++|+|+++++++
T Consensus 168 ~~~----~~-----~~~~~~V~~v~fsp-dg~~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~ 236 (365)
T 4h5i_A 168 TEK----FE-----IETRGEVKDLHFST-DGKVVAYITG-SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIA 236 (365)
T ss_dssp EEE----EE-----EECSSCCCEEEECT-TSSEEEEECS-SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEE
T ss_pred cEE----EE-----eCCCCceEEEEEcc-CCceEEeccc-eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEE
Confidence 211 11 13556799999999 6678888875 456667666665543 34568889999999999999999
Q ss_pred EecCCC----eEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecc-cccccCCe
Q 014125 283 GGRKDP----YILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISG-FQAAADTV 357 (430)
Q Consensus 283 ~~~~d~----~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~v 357 (430)
++ .|+ .+++|++...............|...|++++|+|+|++||+|+.|+.|+|||+.+++++.. +.+|...|
T Consensus 237 ~s-~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V 315 (365)
T 4h5i_A 237 AS-LKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAI 315 (365)
T ss_dssp EE-ESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCE
T ss_pred Ee-cCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCE
Confidence 98 666 6889998877554444444567889999999999999999999999999999999999887 47899999
Q ss_pred eEEEEcCCCcEEEEeeCCceeeec
Q 014125 358 NGFSFHPFLPMAASSSGHRRFPVD 381 (430)
Q Consensus 358 ~~~~~~~~~~~l~s~~~d~~~~vw 381 (430)
++++|+|+|++||+++.|++|+||
T Consensus 316 ~~v~fSpdg~~laS~S~D~tvrvw 339 (365)
T 4h5i_A 316 TEVTISPDSTYVASVSAANTIHII 339 (365)
T ss_dssp EEEEECTTSCEEEEEETTSEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCeEEEE
Confidence 999999999999999854433333
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-40 Score=295.37 Aligned_cols=300 Identities=12% Similarity=0.149 Sum_probs=207.6
Q ss_pred eEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEE
Q 014125 64 KGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFAS 143 (430)
Q Consensus 64 ~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 143 (430)
..+.+.+++.++.+ +.+.....|+++.. ....|...|.+++| +|||++|++
T Consensus 9 sg~d~g~~~~~~~~-~g~~~~~~w~~p~~---------------------~p~~H~~~V~~v~f-------SpDG~~las 59 (357)
T 4g56_B 9 SGVDLGTENLYFQS-NGSSKGSAWGRPVT---------------------APACMEVQIGAVRY-------RRDGALLLA 59 (357)
T ss_dssp -----------------------------------------------------CCCSEEEEEEE-------CSSSCEEEE
T ss_pred cCCCCCccceEEec-CCCccccccCCCCC---------------------CcccccCCEEEEEE-------CCCCCEEEE
Confidence 34566666655444 44567889987632 11246789999999 889999999
Q ss_pred EeC------CCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccCC
Q 014125 144 TTR------DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGN 217 (430)
Q Consensus 144 ~~~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~ 217 (430)
++. |+.|++|+..++.....+... ...+...|.+++|+|++.+++++.|+.|++||+.++.... .....
T Consensus 60 ~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~-~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~----~~~~~ 134 (357)
T 4g56_B 60 ASSLSSRTWGGSIWVFKDPEGAPNESLCTA-GVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLL----VNKFA 134 (357)
T ss_dssp EECSSSSSCCEEEEEESSCC---CGGGCSE-EEECSSCEEEEEEETTTEEEEEETTSCEEEC--------C----CCCEE
T ss_pred EcCCCCccccCeEEEEECCCCCcceeEecc-cCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeE----EEeec
Confidence 998 778999998877544332211 1123347999999999998888999999999998753221 11112
Q ss_pred CCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCC-EEEEEecCCCeEEEEeCC
Q 014125 218 KEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGN-YLYTGGRKDPYILCWDLR 296 (430)
Q Consensus 218 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~d~~i~i~d~~ 296 (430)
..+|...|++++|+| ++.+|++|+.|++|++||+++++.+..+.+|...|++++|+|++. .+++++ .|+.|++||++
T Consensus 135 ~~~h~~~V~~v~~sp-dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~-~dg~v~~wd~~ 212 (357)
T 4g56_B 135 KYEHDDIVKTLSVFS-DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCG-EDGRILLWDTR 212 (357)
T ss_dssp ECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEE-TTSCEEECCTT
T ss_pred cCCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeec-cCCceEEEECC
Confidence 357889999999999 677999999999999999999999999999999999999999886 677777 99999999999
Q ss_pred CCceEEEEeecccCCccceEEEEEcCCC-CEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCC-cEEEEeeC
Q 014125 297 KAVQVVYKLYRSSEHTNQRILFDIEPSG-RHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFL-PMAASSSG 374 (430)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~ 374 (430)
++.... ......+...+.+++|+|++ .+|++|+.|+.|++||+++++.+..+.+|...|++++|+|++ ++|++++.
T Consensus 213 ~~~~~~--~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~ 290 (357)
T 4g56_B 213 KPKPAT--RIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISE 290 (357)
T ss_dssp SSSCBC--BCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEET
T ss_pred CCceee--eeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeC
Confidence 875432 22234567789999999974 689999999999999999999999999999999999999987 57899998
Q ss_pred CceeeecCCCc---cccccCCCcEEEEeec
Q 014125 375 HRRFPVDDFED---LHLSGDENCVSVWSFL 401 (430)
Q Consensus 375 d~~~~vw~~~~---l~~~~~d~~i~~w~~~ 401 (430)
|+.|+|||.+. +...++.+.|.--.+.
T Consensus 291 D~~i~iwd~~~~~~~~~~~H~~~V~~vafs 320 (357)
T 4g56_B 291 DCTVAVLDADFSEVFRDLSHRDFVTGVAWS 320 (357)
T ss_dssp TSCEEEECTTSCEEEEECCCSSCEEEEEEC
T ss_pred CCEEEEEECCCCcEeEECCCCCCEEEEEEe
Confidence 77777776543 2233445554443443
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-40 Score=305.26 Aligned_cols=300 Identities=16% Similarity=0.180 Sum_probs=230.1
Q ss_pred ceeec-ccCCCceeEEEECc-CCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecc
Q 014125 52 QFRTS-SIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFP 129 (430)
Q Consensus 52 ~~~~~-~~h~~~v~~~~~sp-~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 129 (430)
....+ .+|.+.|++++|+| ++++||+|+.||+|+|||+.+... ...........|...|.+++|
T Consensus 54 ~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~------------~~~~~~~~~~~h~~~v~~~~~-- 119 (437)
T 3gre_A 54 LIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIV------------GEVYSSSLTYDCSSTVTQITM-- 119 (437)
T ss_dssp EEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHT------------TCCCSCSEEEECSSCEEEEEE--
T ss_pred EEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECccccc------------CcccceeeeccCCCCEEEEEE--
Confidence 34455 89999999999999 999999999999999999864110 001112234467889999999
Q ss_pred ccCccCCCCceEEEEeCCCcEEEEecc---CCceeeeeecccc-----cc--cccceEEEE--ECCCCcEEEE-EcCCeE
Q 014125 130 HMSASDPTSCVFASTTRDHPIHLWDAT---TGLLRCTYRAYDA-----VD--EITAAFSVA--FNPTGTKIFA-GYNKSV 196 (430)
Q Consensus 130 ~~~~~~~~~~~l~~~~~dg~i~vwd~~---~~~~~~~~~~~~~-----~~--~~~~v~~~~--~~~~~~~l~~-~~d~~i 196 (430)
+|++.+|++++.||.|++||+. +++.......+.. .. +...+.++. +++++.++++ +.|+.|
T Consensus 120 -----~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 194 (437)
T 3gre_A 120 -----IPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRV 194 (437)
T ss_dssp -----CTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEE
T ss_pred -----eCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeE
Confidence 6789999999999999999995 5555444332210 00 223566666 6688988885 589999
Q ss_pred EEEEcCCCCCcccccccccCCCCC--CCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEee-ccccCeEEEEE
Q 014125 197 RVFDVHRPGRDFEKYSTLKGNKEG--QAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH-GQEGGVTHVQF 273 (430)
Q Consensus 197 ~v~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~-~~~~~i~~~~~ 273 (430)
++||++.... ...+.. |...|++++|+| ++.+|++|+.||.|++||+++++.+..+. .|...|.+++|
T Consensus 195 ~iwd~~~~~~--------~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 265 (437)
T 3gre_A 195 IIFDIRTLER--------LQIIENSPRHGAVSSICIDE-ECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEV 265 (437)
T ss_dssp EEEETTTCCE--------EEEEECCGGGCCEEEEEECT-TSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEE
T ss_pred EEEeCCCCee--------eEEEccCCCCCceEEEEECC-CCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEe
Confidence 9999987422 111223 678899999999 67899999999999999999999988876 67789999966
Q ss_pred c----cCCCEEEEEecCCCeEEEEeCCCCceEEEEeec--------------------cc--CCccceEEEEEcCCCCEE
Q 014125 274 S----RDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYR--------------------SS--EHTNQRILFDIEPSGRHL 327 (430)
Q Consensus 274 ~----~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~--------------------~~--~~~~~v~~~~~~~~~~~l 327 (430)
+ |++.+|++++ .||.|++||++++......... .. .|...|++++|+ ++++|
T Consensus 266 ~~~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l 343 (437)
T 3gre_A 266 CQFYGKNSVIVVGGS-SKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKIL 343 (437)
T ss_dssp CTTTCTTEEEEEEES-TTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEE
T ss_pred ccccCCCccEEEEEc-CCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEE
Confidence 5 4677899888 9999999999987543322100 01 267789999999 77999
Q ss_pred EEEccCCcEEEEEcCCCCeeccccc-------------------------------------ccCCeeEEEEcCC--CcE
Q 014125 328 GTGGQDGLVHIYDLQTGKWISGFQA-------------------------------------AADTVNGFSFHPF--LPM 368 (430)
Q Consensus 328 ~~~~~dg~i~vwd~~~~~~~~~~~~-------------------------------------~~~~v~~~~~~~~--~~~ 368 (430)
++|+.||.|++||+.+++.+..+.+ |.+.|++++|+++ +.+
T Consensus 344 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~ 423 (437)
T 3gre_A 344 LTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPL 423 (437)
T ss_dssp EEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEE
T ss_pred EecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceE
Confidence 9999999999999999887776665 7888999999987 778
Q ss_pred EEEeeCCceeeec
Q 014125 369 AASSSGHRRFPVD 381 (430)
Q Consensus 369 l~s~~~d~~~~vw 381 (430)
|++++.||.|+||
T Consensus 424 l~s~~~dG~I~iw 436 (437)
T 3gre_A 424 LVACDNSGLIGIF 436 (437)
T ss_dssp EEEEETTSCEEEE
T ss_pred EEEEcCCceEEEe
Confidence 8888876666665
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-41 Score=304.23 Aligned_cols=252 Identities=13% Similarity=0.103 Sum_probs=193.4
Q ss_pred ecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCcc
Q 014125 55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS 134 (430)
Q Consensus 55 ~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 134 (430)
.+..|.++|++++|+|+|++||+|+.||.|+|||+.++.. ........|...|.+++|
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~---------------~~~~~~~~h~~~v~~~~~------- 63 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGW---------------KHARTFSDHDKIVTCVDW------- 63 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEE---------------EECCCBCCCSSCEEEEEE-------
T ss_pred eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCce---------------EEEEEEecCCceEEEEEE-------
Confidence 3445778999999999999999999999999999986510 111123346789999999
Q ss_pred CCCCceEEEEeCCCcEEEEeccCCc---eeeeeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCCcccc
Q 014125 135 DPTSCVFASTTRDHPIHLWDATTGL---LRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFEK 210 (430)
Q Consensus 135 ~~~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~~~ 210 (430)
+|++++|++++.||.|++||+.+++ ....+..+.. .|.+++|+|++++|++ +.|+.|++||++..... .
T Consensus 64 s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-~- 136 (377)
T 3dwl_C 64 APKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNR-----AATFVRWSPNEDKFAVGSGARVISVCYFEQENDW-W- 136 (377)
T ss_dssp CTTTCCEEEEETTSSEEEC------CCCCEEECCCCSS-----CEEEEECCTTSSCCEEEESSSCEEECCC-----C-C-
T ss_pred eCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCC-----ceEEEEECCCCCEEEEEecCCeEEEEEECCcccc-e-
Confidence 6789999999999999999999877 3444444443 8999999999998885 58999999999874320 0
Q ss_pred cccccCCCCC-CCcceEEEEEcCCCCceEEEecCCCeEEEEEcC------------------CceeeEEeeccccCeEEE
Q 014125 211 YSTLKGNKEG-QAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED------------------NMELLYVLHGQEGGVTHV 271 (430)
Q Consensus 211 ~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~------------------~~~~~~~~~~~~~~i~~~ 271 (430)
....... |...|.+++|+| ++.+|++++.|+.|++||++ .++.+..+ .|...|.++
T Consensus 137 ---~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~ 211 (377)
T 3dwl_C 137 ---VSKHLKRPLRSTILSLDWHP-NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAV 211 (377)
T ss_dssp ---CCEEECSSCCSCEEEEEECT-TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEE
T ss_pred ---eeeEeecccCCCeEEEEEcC-CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEE
Confidence 1112233 888999999999 67799999999999999985 35566666 899999999
Q ss_pred EEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcC
Q 014125 272 QFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQ 342 (430)
Q Consensus 272 ~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 342 (430)
+|+|++++|++++ .||.|++||+++.............|...|.+++|+|++++|++|+.++.+ +|+..
T Consensus 212 ~~sp~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 212 GFSPSGNALAYAG-HDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp EECTTSSCEEEEE-TTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred EECCCCCEEEEEe-CCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 9999999999999 999999999998866433344446788999999999999999999877655 66665
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-39 Score=293.20 Aligned_cols=295 Identities=13% Similarity=0.183 Sum_probs=232.7
Q ss_pred cccCCCce--eEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCc
Q 014125 56 SSIPNNFL--KGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (430)
Q Consensus 56 ~~~h~~~v--~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (430)
..+|.+.+ .+++|++ ..+++++.||.|++|++.+++.. ......|...|.+++|
T Consensus 87 ~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~----------------~~~~~~~~~~v~~v~~------ 142 (401)
T 4aez_A 87 APGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVS----------------ALAETDESTYVASVKW------ 142 (401)
T ss_dssp CTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEE----------------EEEECCTTCCEEEEEE------
T ss_pred CCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEe----------------EeeecCCCCCEEEEEE------
Confidence 34676654 4456654 66888999999999999876432 2233346789999999
Q ss_pred cCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCcccccc
Q 014125 134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYS 212 (430)
Q Consensus 134 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~ 212 (430)
+|++.+|++|+.||.|++||+.+++.+..+..+.. .|.+++|+ +.+++ ++.|+.|++||++.....
T Consensus 143 -s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~----- 209 (401)
T 4aez_A 143 -SHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQA-----RVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQ----- 209 (401)
T ss_dssp -CTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSS-----CEEEEEEE--TTEEEEEETTSEEEEEETTSSSCE-----
T ss_pred -CCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCC-----ceEEEEEC--CCEEEEEcCCCCEEEEecccCcce-----
Confidence 77899999999999999999999998888876665 89999994 45676 559999999999854322
Q ss_pred cccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEec--CCCeE
Q 014125 213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGR--KDPYI 290 (430)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--~d~~i 290 (430)
.....+|...|.+++|+| ++.+|++|+.|+.|++||+++++....+..|...|.+++|+|++..++++++ .|+.|
T Consensus 210 --~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i 286 (401)
T 4aez_A 210 --IGTLQGHSSEVCGLAWRS-DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQI 286 (401)
T ss_dssp --EEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEE
T ss_pred --eeEEcCCCCCeeEEEEcC-CCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEE
Confidence 222357888999999999 7789999999999999999999999999999999999999998876666542 59999
Q ss_pred EEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEE--EccCCcEEEEEcCCCCeec--ccccccCCeeEEEEcCCC
Q 014125 291 LCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGT--GGQDGLVHIYDLQTGKWIS--GFQAAADTVNGFSFHPFL 366 (430)
Q Consensus 291 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~ 366 (430)
++||++++.... .+ .+...+.+++|+|++++|++ |+.||.|++||+.+++... .+.+|...|.+++|+|++
T Consensus 287 ~i~d~~~~~~~~-~~----~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg 361 (401)
T 4aez_A 287 HFWNAATGARVN-TV----DAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDG 361 (401)
T ss_dssp EEEETTTCCEEE-EE----ECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTS
T ss_pred EEEECCCCCEEE-EE----eCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCC
Confidence 999999875443 22 35678999999999999998 5589999999999866544 467899999999999999
Q ss_pred cEEEEeeCCceeeecCCCccccccCCCcEEEEeecccccccccCCC
Q 014125 367 PMAASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYASMMENADGI 412 (430)
Q Consensus 367 ~~l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~ 412 (430)
++|++++ .|+.|++|++..++.+.....+
T Consensus 362 ~~l~s~~-----------------~dg~i~iw~~~~~~~~~~~~~~ 390 (401)
T 4aez_A 362 RILSTAA-----------------SDENLKFWRVYDGDHVKRPIPI 390 (401)
T ss_dssp SEEEEEC-----------------TTSEEEEEECCC----------
T ss_pred CEEEEEe-----------------CCCcEEEEECCCCccccccccc
Confidence 9999987 4678888888877766555443
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-39 Score=292.77 Aligned_cols=269 Identities=18% Similarity=0.221 Sum_probs=218.9
Q ss_pred ecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeeccccc-------------ccccceEEEEEC
Q 014125 116 VTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAV-------------DEITAAFSVAFN 182 (430)
Q Consensus 116 ~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-------------~~~~~v~~~~~~ 182 (430)
..|...|.+++| +|+|++|++|+ ++.+++|++.+++.+..+..+... .+...|.+++|+
T Consensus 61 ~~h~~~V~~v~f-------spdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s 132 (393)
T 1erj_A 61 LDHTSVVCCVKF-------SNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFS 132 (393)
T ss_dssp EECSSCCCEEEE-------CTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEEC
T ss_pred cCCCCEEEEEEE-------CCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEEC
Confidence 357789999999 77999999986 688999999999887776544311 111248899999
Q ss_pred CCCcEEEE-EcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEe
Q 014125 183 PTGTKIFA-GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVL 261 (430)
Q Consensus 183 ~~~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~ 261 (430)
|++++|++ +.|+.|++||+... .....+.+|...|.+++|+| ++..|++++.|++|++||+++++....+
T Consensus 133 ~dg~~l~s~~~d~~i~iwd~~~~--------~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~v~iwd~~~~~~~~~~ 203 (393)
T 1erj_A 133 PDGKFLATGAEDRLIRIWDIENR--------KIVMILQGHEQDIYSLDYFP-SGDKLVSGSGDRTVRIWDLRTGQCSLTL 203 (393)
T ss_dssp TTSSEEEEEETTSCEEEEETTTT--------EEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred CCCCEEEEEcCCCeEEEEECCCC--------cEEEEEccCCCCEEEEEEcC-CCCEEEEecCCCcEEEEECCCCeeEEEE
Confidence 99999995 58999999999763 22223468889999999999 6679999999999999999999888777
Q ss_pred eccccCeEEEEEcc-CCCEEEEEecCCCeEEEEeCCCCceEEEEe---ecccCCccceEEEEEcCCCCEEEEEccCCcEE
Q 014125 262 HGQEGGVTHVQFSR-DGNYLYTGGRKDPYILCWDLRKAVQVVYKL---YRSSEHTNQRILFDIEPSGRHLGTGGQDGLVH 337 (430)
Q Consensus 262 ~~~~~~i~~~~~~~-~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 337 (430)
. +...+.+++|+| ++++|++++ .|+.|++||++++....... ....+|...|.+++|+|+|++|++|+.||.|+
T Consensus 204 ~-~~~~v~~~~~~~~~~~~l~~~s-~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~ 281 (393)
T 1erj_A 204 S-IEDGVTTVAVSPGDGKYIAAGS-LDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVK 281 (393)
T ss_dssp E-CSSCEEEEEECSTTCCEEEEEE-TTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred E-cCCCcEEEEEECCCCCEEEEEc-CCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEE
Confidence 6 567899999999 899999999 99999999999875432211 11246888999999999999999999999999
Q ss_pred EEEcCCC------------CeecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCCC---------------------
Q 014125 338 IYDLQTG------------KWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFE--------------------- 384 (430)
Q Consensus 338 vwd~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~--------------------- 384 (430)
+||+++. .....+.+|...|.+++|+|++.+|++++.|+.+++||..
T Consensus 282 ~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~ 361 (393)
T 1erj_A 282 LWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVA 361 (393)
T ss_dssp EEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred EEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEec
Confidence 9999763 3455677899999999999999999999999999999542
Q ss_pred ----------ccccccCCCcEEEEeeccc
Q 014125 385 ----------DLHLSGDENCVSVWSFLYA 403 (430)
Q Consensus 385 ----------~l~~~~~d~~i~~w~~~~~ 403 (430)
.|++++.|++|++|++...
T Consensus 362 ~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 362 NGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp SSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred CCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 2678889999999998643
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-39 Score=280.40 Aligned_cols=257 Identities=18% Similarity=0.243 Sum_probs=205.1
Q ss_pred eecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCc
Q 014125 54 RTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (430)
Q Consensus 54 ~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (430)
.++.+|.+.|++++|+|+|++||+|+.|++|+|||+.... .........|..+|++++|.|
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~---------------~~~~~~l~gH~~~V~~v~~s~---- 63 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET---------------HKLIDTLTGHEGPVWRVDWAH---- 63 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSC---------------BCCCEEECCCSSCEEEEEECC----
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCC---------------cEEEEEEccccCCeEEEEecC----
Confidence 4678999999999999999999999999999999986431 111223456788999999943
Q ss_pred cCCCCceEEEEeCCCcEEEEeccCCc--eeeeeecccccccccceEEEEECCC--CcEEE-EEcCCeEEEEEcCCCCCcc
Q 014125 134 SDPTSCVFASTTRDHPIHLWDATTGL--LRCTYRAYDAVDEITAAFSVAFNPT--GTKIF-AGYNKSVRVFDVHRPGRDF 208 (430)
Q Consensus 134 ~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~-~~~d~~i~v~d~~~~~~~~ 208 (430)
..++.+|++|+.||+|++||+.+++ .+..+..+.. .|.+++|+|+ +.+|+ ++.|+.|++||++......
T Consensus 64 -~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~-----~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~ 137 (297)
T 2pm7_B 64 -PKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSA-----SVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTS 137 (297)
T ss_dssp -GGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSS-----CEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBC
T ss_pred -CCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCC-----ceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCcee
Confidence 1247899999999999999998874 3344444443 8999999998 77887 5599999999997642211
Q ss_pred cccccccCCCCCCCcceEEEEEcCCC------------CceEEEecCCCeEEEEEcCCce----eeEEeeccccCeEEEE
Q 014125 209 EKYSTLKGNKEGQAGIMSAIAFSPTH------------TGMLAIGSYSQTSAIYREDNME----LLYVLHGQEGGVTHVQ 272 (430)
Q Consensus 209 ~~~~~~~~~~~~~~~~v~~~~~~~~~------------~~~l~~~~~dg~v~~~d~~~~~----~~~~~~~~~~~i~~~~ 272 (430)
.....+|...|.+++|+|+. +.+|++|+.|++|++||+++++ ....+.+|...|.+++
T Consensus 138 ------~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~ 211 (297)
T 2pm7_B 138 ------PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVA 211 (297)
T ss_dssp ------CEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEE
T ss_pred ------eeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEE
Confidence 11235788899999999952 4689999999999999998765 5667889999999999
Q ss_pred EccCC---CEEEEEecCCCeEEEEeCCCCceE-EEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcC
Q 014125 273 FSRDG---NYLYTGGRKDPYILCWDLRKAVQV-VYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQ 342 (430)
Q Consensus 273 ~~~~~---~~l~~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 342 (430)
|+|++ .+|++++ .|++|++||++..... .........+...+.+++|+|+|++|++++.||.|++|+..
T Consensus 212 ~sp~~~~~~~las~s-~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 212 WSPTVLLRSYMASVS-QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp ECCCCSSSEEEEEEE-TTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred ECCCCCCceEEEEEE-CCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 99985 7888988 9999999999874321 11222224677889999999999999999999999999986
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-39 Score=281.65 Aligned_cols=245 Identities=17% Similarity=0.288 Sum_probs=207.8
Q ss_pred eeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-Ec
Q 014125 114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GY 192 (430)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~ 192 (430)
....|...|.+++| +|++++|++++.||.|++|++.+++....+..+.. .|.+++|+|++++|++ +.
T Consensus 18 ~~~gh~~~v~~~~~-------s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~s~~~ 85 (312)
T 4ery_A 18 TLAGHTKAVSSVKF-------SPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL-----GISDVAWSSDSNLLVSASD 85 (312)
T ss_dssp EECCCSSCEEEEEE-------CTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSS-----CEEEEEECTTSSEEEEEET
T ss_pred EEcccCCcEEEEEE-------CCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCC-----ceEEEEEcCCCCEEEEECC
Confidence 34567889999999 77899999999999999999999998888876665 8999999999999995 58
Q ss_pred CCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEE
Q 014125 193 NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQ 272 (430)
Q Consensus 193 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~ 272 (430)
|+.|++||++... ......+|...|.+++|+| ++.+|++|+.|+.|++||+++++.+..+..|..+|.+++
T Consensus 86 d~~i~vwd~~~~~--------~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~ 156 (312)
T 4ery_A 86 DKTLKIWDVSSGK--------CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH 156 (312)
T ss_dssp TSEEEEEETTTCC--------EEEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred CCEEEEEECCCCc--------EEEEEcCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEE
Confidence 9999999998642 1222357888999999999 677999999999999999999999999999999999999
Q ss_pred EccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccccc
Q 014125 273 FSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQA 352 (430)
Q Consensus 273 ~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 352 (430)
|+|++++|++++ .||.|++||+++........ ..+...+..++|+|++++|++++.||.|++||+++++.+..+.+
T Consensus 157 ~~~~~~~l~~~~-~d~~i~~wd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 232 (312)
T 4ery_A 157 FNRDGSLIVSSS-YDGLCRIWDTASGQCLKTLI---DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 232 (312)
T ss_dssp ECTTSSEEEEEE-TTSCEEEEETTTCCEEEEEC---CSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECS
T ss_pred EcCCCCEEEEEe-CCCcEEEEECCCCceeeEEe---ccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEe
Confidence 999999999999 99999999999875443222 34667899999999999999999999999999999999998888
Q ss_pred ccCCeeE--EEE-cCCCcEEEEeeCCceeeecCC
Q 014125 353 AADTVNG--FSF-HPFLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 353 ~~~~v~~--~~~-~~~~~~l~s~~~d~~~~vw~~ 383 (430)
|...+.. ..+ .+++.+|++++.|+.|++|+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~ 266 (312)
T 4ery_A 233 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 266 (312)
T ss_dssp SCCSSSCCCEEEECSSSCEEEECCTTSCEEEEET
T ss_pred cCCceEEEEEEEEeCCCcEEEEECCCCEEEEEEC
Confidence 8765332 233 467888888887777777643
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-39 Score=299.09 Aligned_cols=301 Identities=16% Similarity=0.235 Sum_probs=220.6
Q ss_pred ccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCC------------Ceeee
Q 014125 57 SIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEG------------ESVYD 124 (430)
Q Consensus 57 ~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~v~~ 124 (430)
..|.+.|++++|+|+|++||+|+.||.|+||++.++........ ...........|. ..|.+
T Consensus 25 ~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~------~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~ 98 (447)
T 3dw8_B 25 VAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSR------GEYNVYSTFQSHEPEFDYLKSLEIEEKINK 98 (447)
T ss_dssp CCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCC------CCEEEEEEEECCCCEEEGGGTEEECCCCCE
T ss_pred ccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccc------cceeEecccccccccccccccccccCceEE
Confidence 34688999999999999999999999999999987642110000 0000112233454 77999
Q ss_pred eeeccccCccCCCC--ceEEEEeCCCcEEEEeccCCceeeee---ec--------------------------------c
Q 014125 125 FCWFPHMSASDPTS--CVFASTTRDHPIHLWDATTGLLRCTY---RA--------------------------------Y 167 (430)
Q Consensus 125 ~~~~~~~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~---~~--------------------------------~ 167 (430)
++| +|++ ..|++++.||.|++||+.++...... .. .
T Consensus 99 l~~-------~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (447)
T 3dw8_B 99 IRW-------LPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRI 171 (447)
T ss_dssp EEE-------CCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEE
T ss_pred EEE-------cCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEE
Confidence 999 5566 78999999999999999775432110 00 0
Q ss_pred cccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeE
Q 014125 168 DAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTS 247 (430)
Q Consensus 168 ~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v 247 (430)
....|...|.+++|+|++++|+++.|+.|++||++.................+|...|.+++|+|++..+|++|+.||.|
T Consensus 172 ~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i 251 (447)
T 3dw8_B 172 FANAHTYHINSISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTI 251 (447)
T ss_dssp ECSCCSSCCCEEEECTTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCE
T ss_pred eccCCCcceEEEEEcCCCCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeE
Confidence 01234458999999999999997799999999998533222211111123467888999999999655899999999999
Q ss_pred EEEEcCCcee----eEEeecccc------------CeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCC
Q 014125 248 AIYREDNMEL----LYVLHGQEG------------GVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEH 311 (430)
Q Consensus 248 ~~~d~~~~~~----~~~~~~~~~------------~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 311 (430)
++||+++++. ...+..|.. .|.+++|+|++++|++++ . +.|++||++........+ ..|
T Consensus 252 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~-~~v~iwd~~~~~~~~~~~---~~~ 326 (447)
T 3dw8_B 252 RLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD-Y-LSVKVWDLNMENRPVETY---QVH 326 (447)
T ss_dssp EEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE-S-SEEEEEETTCCSSCSCCE---ESC
T ss_pred EEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee-C-CeEEEEeCCCCcccccee---ecc
Confidence 9999998886 677887775 899999999999999998 6 999999998732322222 223
Q ss_pred cc---------------ceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccc-------------------------
Q 014125 312 TN---------------QRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQ------------------------- 351 (430)
Q Consensus 312 ~~---------------~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~------------------------- 351 (430)
.. .+..++|+|++++|++|+.||.|++||+.+++.+. +.
T Consensus 327 ~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (447)
T 3dw8_B 327 EYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKK 405 (447)
T ss_dssp GGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCT
T ss_pred ccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeecccccccccccCCccccccCCccc
Confidence 22 13349999999999999999999999999887643 11
Q ss_pred --------cccCCeeEEEEcCCCcEEEEeeCCc
Q 014125 352 --------AAADTVNGFSFHPFLPMAASSSGHR 376 (430)
Q Consensus 352 --------~~~~~v~~~~~~~~~~~l~s~~~d~ 376 (430)
.+...|..++|+|++++||+++.++
T Consensus 406 ~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~ 438 (447)
T 3dw8_B 406 DEISVDSLDFNKKILHTAWHPKENIIAVATTNN 438 (447)
T ss_dssp TCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC
T ss_pred ccccccccccCCceeEEEECCCCCEEEEEecce
Confidence 2345689999999999999998654
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-39 Score=318.37 Aligned_cols=281 Identities=19% Similarity=0.232 Sum_probs=236.9
Q ss_pred ceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecccc
Q 014125 52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (430)
Q Consensus 52 ~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (430)
..+.+.+|.+.|++++|+|+|++||+|+.||.|+|||+.++... .....|..+|.+++|
T Consensus 5 ~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~-----------------~~~~~~~~~v~~~~~---- 63 (814)
T 3mkq_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEV-----------------RSIQVTETPVRAGKF---- 63 (814)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE-----------------EEEECCSSCEEEEEE----
T ss_pred cceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceE-----------------EEEecCCCcEEEEEE----
Confidence 34578899999999999999999999999999999999865332 123356689999999
Q ss_pred CccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCCcccc
Q 014125 132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFEK 210 (430)
Q Consensus 132 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~~~ 210 (430)
+|++++|++++.||.|++||+.+++.+..+..+.. .|.+++|+|++.+|++ +.|+.|++||+.....
T Consensus 64 ---s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~-----~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~---- 131 (814)
T 3mkq_A 64 ---IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPD-----YIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA---- 131 (814)
T ss_dssp ---EGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSS-----CEEEEEECSSSSEEEEEETTSEEEEEEGGGTSE----
T ss_pred ---eCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCC-----CEEEEEEeCCCCEEEEEcCCCEEEEEECCCCce----
Confidence 66899999999999999999999999888877665 8999999999998885 5899999999976321
Q ss_pred cccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccc-cCeEEEEEcc--CCCEEEEEecCC
Q 014125 211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE-GGVTHVQFSR--DGNYLYTGGRKD 287 (430)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~-~~i~~~~~~~--~~~~l~~~~~~d 287 (430)
......+|...|.+++|+|.++..+++++.||.|++||+.++.....+..+. ..+.+++|+| ++.+|++++ .|
T Consensus 132 ---~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~d 207 (814)
T 3mkq_A 132 ---LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS-DD 207 (814)
T ss_dssp ---EEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEEC-TT
T ss_pred ---EEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEe-CC
Confidence 2223357788999999999667799999999999999999888777776554 8899999999 999999999 99
Q ss_pred CeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCc
Q 014125 288 PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLP 367 (430)
Q Consensus 288 ~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 367 (430)
|.|++||++++... ..+ ..|...+.+++|+|++++|++++.||.|++||+.+++.+..+..|...+.+++|+|++.
T Consensus 208 g~i~~~d~~~~~~~-~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 283 (814)
T 3mkq_A 208 LTIKIWDYQTKSCV-ATL---EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGR 283 (814)
T ss_dssp SEEEEEETTTTEEE-EEE---ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCG
T ss_pred CEEEEEECCCCcEE-EEE---cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCC
Confidence 99999999887533 222 46888999999999999999999999999999999888888887777888888888776
Q ss_pred --EEEEee
Q 014125 368 --MAASSS 373 (430)
Q Consensus 368 --~l~s~~ 373 (430)
++++++
T Consensus 284 ~~~~~~~~ 291 (814)
T 3mkq_A 284 KNYIASGF 291 (814)
T ss_dssp GGEEEEEE
T ss_pred ceEEEEEe
Confidence 344444
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-39 Score=291.86 Aligned_cols=252 Identities=19% Similarity=0.341 Sum_probs=211.8
Q ss_pred eecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cC
Q 014125 115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN 193 (430)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d 193 (430)
..+|...|++++| +|++++|++|+.||+|++||+.+++....+..+.. .|.+++|+|++++|+++ .|
T Consensus 62 l~gH~~~V~~~~~-------sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~-----~v~~~~~s~~g~~las~~~d 129 (380)
T 3iz6_a 62 LQGHSGKVYSLDW-------TPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCP-----WVMECAFAPNGQSVACGGLD 129 (380)
T ss_dssp ECCCSSCEEEEEE-------CTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCT-----TCCCCEECTTSSEEEECCSS
T ss_pred ccccccEEEEEEE-------cCCCCEEEEEeCCCeEEEEECCCCccceEEecCCC-----CEEEEEECCCCCEEEEeeCC
Confidence 3457789999999 77899999999999999999999998888887765 89999999999999955 89
Q ss_pred CeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEe-----eccccCe
Q 014125 194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVL-----HGQEGGV 268 (430)
Q Consensus 194 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~-----~~~~~~i 268 (430)
+.+++|++........ .......+.+|...+.++.|.|+++..|++|+.|++|++||+++++.+..+ .+|...|
T Consensus 130 ~~v~iw~~~~~~~~~~-~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v 208 (380)
T 3iz6_a 130 SACSIFNLSSQADRDG-NMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADV 208 (380)
T ss_dssp SCCEEEECCCCSSCCC-SSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCE
T ss_pred CcEEEEECCCCccccC-CccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCe
Confidence 9999999975321111 112333457899999999999977788999999999999999999888776 5788999
Q ss_pred EEEEEcc-CCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCee
Q 014125 269 THVQFSR-DGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWI 347 (430)
Q Consensus 269 ~~~~~~~-~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 347 (430)
.+++|+| ++.+|++++ .|+.|++||++........+ .+|...|.+++|+|++++|++|+.||.|++||+++++.+
T Consensus 209 ~~~~~~~~~~~~l~sgs-~D~~v~~wd~~~~~~~~~~~---~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~ 284 (380)
T 3iz6_a 209 LSLSINSLNANMFISGS-CDTTVRLWDLRITSRAVRTY---HGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQL 284 (380)
T ss_dssp EEEEECSSSCCEEEEEE-TTSCEEEEETTTTCCCCEEE---CCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEE
T ss_pred EEEEeecCCCCEEEEEE-CCCeEEEEECCCCCcceEEE---CCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEE
Confidence 9999987 788999999 99999999998553333233 578999999999999999999999999999999999888
Q ss_pred ccccccc-------CCeeEEEEcCCCcEEEEeeCCceeeecCC
Q 014125 348 SGFQAAA-------DTVNGFSFHPFLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 348 ~~~~~~~-------~~v~~~~~~~~~~~l~s~~~d~~~~vw~~ 383 (430)
..+..+. ..|.+++|+|++++|++++.||.+++||.
T Consensus 285 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~ 327 (380)
T 3iz6_a 285 QVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDT 327 (380)
T ss_dssp EEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEET
T ss_pred EEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEEC
Confidence 7765443 24899999999999999997776666654
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-40 Score=305.28 Aligned_cols=278 Identities=10% Similarity=0.097 Sum_probs=201.4
Q ss_pred CCCceeEEEECcCC---------ceEEE-------------------ecCCCeEEEEeCCCCCCcccccccccccccCcc
Q 014125 59 PNNFLKGIKWSPDG---------SSFLT-------------------SSEDKTLRIFSLPENGISYDVNACSLAKDQDSY 110 (430)
Q Consensus 59 h~~~v~~~~~sp~~---------~~l~s-------------------~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~ 110 (430)
+.+.|.+|+|+|++ ++||+ ++.|++|+||++.+++....
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~------------- 198 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCV------------- 198 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEE-------------
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCce-------------
Confidence 57889999999986 67766 45788999999876532100
Q ss_pred cceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCcee-----------eeeecccccccccceEEE
Q 014125 111 EASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLR-----------CTYRAYDAVDEITAAFSV 179 (430)
Q Consensus 111 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-----------~~~~~~~~~~~~~~v~~~ 179 (430)
......+|...|.+++|+|.. ..++++.+||+++.||+|++||+.++... ..+..+ ...|.++
T Consensus 199 ~~~~l~~~~~~V~~v~wsp~~-~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h-----~~~v~sv 272 (524)
T 2j04_B 199 KVQTIVHSFGEVWDLKWHEGC-HAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLA-----DSLITTF 272 (524)
T ss_dssp EEEEEEECCCSEEEEEECSSC-CCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCT-----TTCEEEE
T ss_pred EEEEEEecCCcEEEEEECCCC-CCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcC-----CCCEEEE
Confidence 011233456789999997742 12345789999999999999999876432 123333 3489999
Q ss_pred EECCCCcEEE-EEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEE--EEcCCCCceEEEecCCCeEEEEEcCCce
Q 014125 180 AFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAI--AFSPTHTGMLAIGSYSQTSAIYREDNME 256 (430)
Q Consensus 180 ~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~l~~~~~dg~v~~~d~~~~~ 256 (430)
+|++++ .|+ ++.||+|++||++.+... .....+|...|.++ +|+|++..+|++|+.|++|++||+++++
T Consensus 273 ~~s~~~-~lasgs~DgtV~lWD~~~~~~~-------~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~ 344 (524)
T 2j04_B 273 DFLSPT-TVVCGFKNGFVAEFDLTDPEVP-------SFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIA 344 (524)
T ss_dssp EESSSS-EEEEEETTSEEEEEETTBCSSC-------SEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHH
T ss_pred EecCCC-eEEEEeCCCEEEEEECCCCCCc-------eEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCC
Confidence 999876 555 569999999999864221 11236788999999 5677333799999999999999999988
Q ss_pred eeEEeecccc--CeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCC
Q 014125 257 LLYVLHGQEG--GVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDG 334 (430)
Q Consensus 257 ~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 334 (430)
....+.+|.. .|.+++|+|+++.+++++ .|++|++||+++..... .+ .+|...|++++|+|+|++|++|+.||
T Consensus 345 ~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~-~d~tv~lwd~~~~~~~~-~l---~gH~~~V~sva~Sp~g~~l~Sgs~Dg 419 (524)
T 2j04_B 345 TTKTTVSRFRGSNLVPVVYCPQIYSYIYSD-GASSLRAVPSRAAFAVH-PL---VSRETTITAIGVSRLHPMVLAGSADG 419 (524)
T ss_dssp HHCEEEEECSCCSCCCEEEETTTTEEEEEC-SSSEEEEEETTCTTCCE-EE---EECSSCEEEEECCSSCCBCEEEETTT
T ss_pred cccccccccccCcccceEeCCCcCeEEEeC-CCCcEEEEECcccccce-ee---ecCCCceEEEEeCCCCCeEEEEECCC
Confidence 7777776653 588999999999999988 89999999999875432 22 46899999999999999999999999
Q ss_pred cEEEEEcCCCCeecccccc-----cCCeeEEEEcCCCcEE
Q 014125 335 LVHIYDLQTGKWISGFQAA-----ADTVNGFSFHPFLPMA 369 (430)
Q Consensus 335 ~i~vwd~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l 369 (430)
+|++||+..+ .+..++.+ ...|.+++|+|++..+
T Consensus 420 tv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~ 458 (524)
T 2j04_B 420 SLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKY 458 (524)
T ss_dssp EEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEE
T ss_pred EEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeE
Confidence 9999997643 22221111 1135566667766643
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-40 Score=324.13 Aligned_cols=339 Identities=9% Similarity=0.046 Sum_probs=236.2
Q ss_pred CCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccc-eeeecCCCeeeeeeeccccCccCCC
Q 014125 59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEA-SLVVTEGESVYDFCWFPHMSASDPT 137 (430)
Q Consensus 59 h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~ 137 (430)
|.+.|++++|+|++++|++|+.||.|++||+.++... ....... ... .....|..+|.+++|+|. +
T Consensus 97 ~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~-~~~i~~~------~~~~~~~~~h~~~V~sl~~sp~------~ 163 (902)
T 2oaj_A 97 VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS-SFKLDNL------QKSSFFPAARLSPIVSIQWNPR------D 163 (902)
T ss_dssp CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEE-EEEECCH------HHHHTCSSSCCCCCCEEEEETT------E
T ss_pred CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccc-cceeccc------cccccccccCCCCeEEEEEccC------C
Confidence 6688999999999999999999999999999876431 0000000 000 112346789999999542 3
Q ss_pred CceEEEEeCCCcEEEEeccCCceeeeeecccc-------------cccccceEEEEECCCCcEEEE-EcCCeEEEEEcCC
Q 014125 138 SCVFASTTRDHPIHLWDATTGLLRCTYRAYDA-------------VDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHR 203 (430)
Q Consensus 138 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-------------~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~ 203 (430)
+..|++|+.||.| +||+.+++....+..+.. ..+...|.+++|+|++.+|++ +.|+.|++||+++
T Consensus 164 ~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~ 242 (902)
T 2oaj_A 164 IGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANS 242 (902)
T ss_dssp EEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTT
T ss_pred CCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Confidence 5789999999999 999999988887765410 112347999999999999995 5899999999977
Q ss_pred CCCccc-ccccccCCC------C---CCCcceEEEEEc----CCCCceEEEe----------------------------
Q 014125 204 PGRDFE-KYSTLKGNK------E---GQAGIMSAIAFS----PTHTGMLAIG---------------------------- 241 (430)
Q Consensus 204 ~~~~~~-~~~~~~~~~------~---~~~~~v~~~~~~----~~~~~~l~~~---------------------------- 241 (430)
+..... .+....... . .+...|.+++|+ |+++.++++|
T Consensus 243 g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~ 322 (902)
T 2oaj_A 243 GHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYE 322 (902)
T ss_dssp CCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHH
T ss_pred CcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchh
Confidence 422110 000000000 0 123456666663 2222334444
Q ss_pred ------------------------------------------------cCCCeEEEEEcCCceeeEE-------------
Q 014125 242 ------------------------------------------------SYSQTSAIYREDNMELLYV------------- 260 (430)
Q Consensus 242 ------------------------------------------------~~dg~v~~~d~~~~~~~~~------------- 260 (430)
+.||.|++||+.++.....
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~ 402 (902)
T 2oaj_A 323 GMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRP 402 (902)
T ss_dssp HHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTT
T ss_pred hhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCC
Confidence 3345566666544422111
Q ss_pred ----------------------------eeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceE---EEEeec--
Q 014125 261 ----------------------------LHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQV---VYKLYR-- 307 (430)
Q Consensus 261 ----------------------------~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~---~~~~~~-- 307 (430)
+.+|...+.+++|+|++++|++++ .|++|++||+.++... ......
T Consensus 403 ~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs-~DgtVrlWd~~~g~~~~~~~~~~~l~~ 481 (902)
T 2oaj_A 403 LATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGH-SNGSVRIYDASHGDIQDNASFEVNLSR 481 (902)
T ss_dssp BEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEE-TTSEEEEEESSCCTTTTTBCEEEEHHH
T ss_pred CeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEec-CCCcEEEEECCCccccCCceEEeechh
Confidence 122333344456678999999999 9999999999876311 001000
Q ss_pred --ccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCC----------------------------------------
Q 014125 308 --SSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGK---------------------------------------- 345 (430)
Q Consensus 308 --~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---------------------------------------- 345 (430)
..+|...|.+++|+|+|++||+|+.||+|+|||+.+++
T Consensus 482 ~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (902)
T 2oaj_A 482 TLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGV 561 (902)
T ss_dssp HTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTC
T ss_pred hcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCC
Confidence 12688899999999999999999999999999998763
Q ss_pred -----eecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCCC------------------------------------
Q 014125 346 -----WISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFE------------------------------------ 384 (430)
Q Consensus 346 -----~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~------------------------------------ 384 (430)
++..+.+|.+.|++++|+|+| +||+|+.|+.|++||.+
T Consensus 562 ~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~ 640 (902)
T 2oaj_A 562 RQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGY 640 (902)
T ss_dssp SEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSS
T ss_pred CCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCC
Confidence 356678899999999999999 99999999999999642
Q ss_pred ---ccccccCCCcEEEEee---cccccccccCCCC
Q 014125 385 ---DLHLSGDENCVSVWSF---LYASMMENADGIN 413 (430)
Q Consensus 385 ---~l~~~~~d~~i~~w~~---~~~~~~~~~~~~~ 413 (430)
.|++++.|++|++|++ ..++....+.+|.
T Consensus 641 ~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~ 675 (902)
T 2oaj_A 641 SSILMVCGTDMGEVITYKILPASGGKFDVQLMDIT 675 (902)
T ss_dssp EEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEE
T ss_pred cceEEEEEecCCcEEEEEEecCCCCcEEEEecCce
Confidence 2556678999999999 6666666666553
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-39 Score=306.20 Aligned_cols=306 Identities=15% Similarity=0.181 Sum_probs=253.5
Q ss_pred ccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCe-eeeeeeccccCccC
Q 014125 57 SIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGES-VYDFCWFPHMSASD 135 (430)
Q Consensus 57 ~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~ 135 (430)
..|.+.|++++|+|+|++||+++ ++.|+||++.++... .........|... |.+++| +
T Consensus 15 ~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~-------------~~~~~~~~~h~~~~v~~~~~-------s 73 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSK-------------VPPVVQFTGHGSSVVTTVKF-------S 73 (615)
T ss_dssp CCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCS-------------SCSEEEECTTTTSCEEEEEE-------C
T ss_pred CCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCc-------------cccceEEecCCCceEEEEEE-------C
Confidence 46889999999999999999998 789999999865100 0122234456778 999999 7
Q ss_pred C--CCceEEEEeCCCcEEEEeccCC--------ceeeeeecccccccccceEEEEECCCCcEEEEE-cC----CeEEEEE
Q 014125 136 P--TSCVFASTTRDHPIHLWDATTG--------LLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN----KSVRVFD 200 (430)
Q Consensus 136 ~--~~~~l~~~~~dg~i~vwd~~~~--------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d----~~i~v~d 200 (430)
| ++++|++++.||.|++||+.++ +....+..+.. .|.+++|+|++++++++ .+ +.|++||
T Consensus 74 p~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d 148 (615)
T 1pgu_A 74 PIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAG-----PISDISWDFEGRRLCVVGEGRDNFGVFISWD 148 (615)
T ss_dssp SSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSS-----CEEEEEECTTSSEEEEEECCSSCSEEEEETT
T ss_pred cCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccc-----cEEEEEEeCCCCEEEEeccCCCCccEEEEEE
Confidence 7 8999999999999999999755 45555554444 89999999999999955 44 5888888
Q ss_pred cCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeecccc---CeEEEEEccC-
Q 014125 201 VHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEG---GVTHVQFSRD- 276 (430)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~---~i~~~~~~~~- 276 (430)
... ......+|...|.+++|+|++..++++++.|+.|++||+.+++.+..+..|.. .|.+++|+|+
T Consensus 149 ~~~----------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 218 (615)
T 1pgu_A 149 SGN----------SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDS 218 (615)
T ss_dssp TCC----------EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTT
T ss_pred CCC----------cceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCC
Confidence 322 12223578889999999996666899999999999999999999999999998 9999999999
Q ss_pred CCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccc---
Q 014125 277 GNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAA--- 353 (430)
Q Consensus 277 ~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--- 353 (430)
+++|++++ .||.|++||++++............|...|.+++|+ ++++|++++.||.|++||+++++.+..+..+
T Consensus 219 ~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~ 296 (615)
T 1pgu_A 219 GEFVITVG-SDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQ 296 (615)
T ss_dssp CCEEEEEE-TTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTC
T ss_pred CCEEEEEe-CCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCc
Confidence 99999999 999999999998754322111111688999999999 9999999999999999999999998888766
Q ss_pred -cCCeeEEEEcCCCcEEEEeeCCceeeecCCCc---------------------cccccCCCcEEEEeec
Q 014125 354 -ADTVNGFSFHPFLPMAASSSGHRRFPVDDFED---------------------LHLSGDENCVSVWSFL 401 (430)
Q Consensus 354 -~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~---------------------l~~~~~d~~i~~w~~~ 401 (430)
...+.++.|. ++.++++++.|+.+++|+... +++++.|+.|++|++.
T Consensus 297 ~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~ 365 (615)
T 1pgu_A 297 LGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSS 365 (615)
T ss_dssp GGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTT
T ss_pred ccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEch
Confidence 3678888886 899999999999999997654 7888999999999987
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-39 Score=306.52 Aligned_cols=315 Identities=13% Similarity=0.150 Sum_probs=257.7
Q ss_pred ceeecccCCCc-eeEEEECc--CCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeec
Q 014125 52 QFRTSSIPNNF-LKGIKWSP--DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWF 128 (430)
Q Consensus 52 ~~~~~~~h~~~-v~~~~~sp--~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 128 (430)
....+.+|.+. |++++|+| ++++||+|+.||.|++||+.++...... ..........|...|.+++|
T Consensus 55 ~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~---------~~~~~~~~~~~~~~v~~~~~- 124 (615)
T 1pgu_A 55 PVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSV---------EVNVKSEFQVLAGPISDISW- 124 (615)
T ss_dssp SEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEE---------EEEEEEEEECCSSCEEEEEE-
T ss_pred cceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccc---------cccccchhhcccccEEEEEE-
Confidence 45578899999 99999999 9999999999999999999643110000 01112233346789999999
Q ss_pred cccCccCCCCceEEEEeCC----CcEEEEeccCCceeeeeecccccccccceEEEEECCCCc-EEE-EEcCCeEEEEEcC
Q 014125 129 PHMSASDPTSCVFASTTRD----HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGT-KIF-AGYNKSVRVFDVH 202 (430)
Q Consensus 129 ~~~~~~~~~~~~l~~~~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~-~~~d~~i~v~d~~ 202 (430)
+|++++|++++.+ +.|++|| .++....+..+.. .|.+++|+|++. .++ ++.|+.|++||+.
T Consensus 125 ------s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~-----~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~ 191 (615)
T 1pgu_A 125 ------DFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQ-----RINACHLKQSRPMRSMTVGDDGSVVFYQGP 191 (615)
T ss_dssp ------CTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSS-----CEEEEEECSSSSCEEEEEETTTEEEEEETT
T ss_pred ------eCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCc-----cEEEEEECCCCCcEEEEEeCCCcEEEEeCC
Confidence 7789999999988 6888888 5666777666554 899999999997 566 5589999999987
Q ss_pred CCCCcccccccccCCCCCCCc---ceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEe-e---ccccCeEEEEEcc
Q 014125 203 RPGRDFEKYSTLKGNKEGQAG---IMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVL-H---GQEGGVTHVQFSR 275 (430)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~-~---~~~~~i~~~~~~~ 275 (430)
.. .....+.+|.. .|.+++|+|+++.+|++++.||.|++||+++++.+..+ . .|...|.+++|+
T Consensus 192 ~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~- 262 (615)
T 1pgu_A 192 PF--------KFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL- 262 (615)
T ss_dssp TB--------EEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-
T ss_pred Cc--------ceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-
Confidence 62 12222356777 89999999943789999999999999999999999888 5 799999999999
Q ss_pred CCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccC
Q 014125 276 DGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAAD 355 (430)
Q Consensus 276 ~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 355 (430)
++++|++++ .|+.|++||+++.................+.++.|. ++.++++++.||.|++||+.+++.+..+.+|..
T Consensus 263 ~~~~l~~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~ 340 (615)
T 1pgu_A 263 DSQKFATVG-ADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNK 340 (615)
T ss_dssp SSSEEEEEE-TTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSS
T ss_pred CCCEEEEEc-CCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCC
Confidence 999999999 999999999998754432222112345678888885 889999999999999999999999999999999
Q ss_pred CeeEEEEcCCCcEEEEeeCCceeeecC-------------------CCccccccCCCcEEEEeecccc
Q 014125 356 TVNGFSFHPFLPMAASSSGHRRFPVDD-------------------FEDLHLSGDENCVSVWSFLYAS 404 (430)
Q Consensus 356 ~v~~~~~~~~~~~l~s~~~d~~~~vw~-------------------~~~l~~~~~d~~i~~w~~~~~~ 404 (430)
.|.+++| |+ |++++.|+.+++|+ ...+++++.|+.|++|++..++
T Consensus 341 ~v~~~~~-~~---l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~ 404 (615)
T 1pgu_A 341 GITALTV-NP---LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHE 404 (615)
T ss_dssp CEEEEET-TT---TEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEE
T ss_pred CEEEEEe-cC---cEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCc
Confidence 9999999 88 99999999999998 5678999999999999998654
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-40 Score=286.15 Aligned_cols=254 Identities=15% Similarity=0.243 Sum_probs=197.8
Q ss_pred ecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCcc
Q 014125 55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS 134 (430)
Q Consensus 55 ~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 134 (430)
.+.+|.+.|++++|+|+|++||+|+.|++|+|||+.++.. ........|...|++++|.|
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~---------------~~~~~l~gH~~~V~~v~~~~----- 67 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQ---------------ILIADLRGHEGPVWQVAWAH----- 67 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEE---------------EEEEEEECCSSCEEEEEECC-----
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCc---------------EEEEEEcCCCccEEEEEeCC-----
Confidence 5679999999999999999999999999999999875421 01123446788999999943
Q ss_pred CCCCceEEEEeCCCcEEEEeccCCc--eeeeeecccccccccceEEEEECCC--CcEEEEE-cCCeEEEEEcCCCCCccc
Q 014125 135 DPTSCVFASTTRDHPIHLWDATTGL--LRCTYRAYDAVDEITAAFSVAFNPT--GTKIFAG-YNKSVRVFDVHRPGRDFE 209 (430)
Q Consensus 135 ~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~-~d~~i~v~d~~~~~~~~~ 209 (430)
..++++|++|+.|++|++||+.+++ ....+..|.. .|.+++|+|+ +.+|+++ .|+.|++||++....
T Consensus 68 ~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~-----~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~--- 139 (316)
T 3bg1_A 68 PMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDS-----SVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQ--- 139 (316)
T ss_dssp GGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSS-----CCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSC---
T ss_pred CCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCC-----ceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCC---
Confidence 1147899999999999999998874 3444444443 8999999998 7778855 899999999976421
Q ss_pred ccccccCCCCCCCcceEEEEEcCCC----------------CceEEEecCCCeEEEEEcCCc---eeeEEeeccccCeEE
Q 014125 210 KYSTLKGNKEGQAGIMSAIAFSPTH----------------TGMLAIGSYSQTSAIYREDNM---ELLYVLHGQEGGVTH 270 (430)
Q Consensus 210 ~~~~~~~~~~~~~~~v~~~~~~~~~----------------~~~l~~~~~dg~v~~~d~~~~---~~~~~~~~~~~~i~~ 270 (430)
........+|...+.+++|+|+. +.+|++|+.|++|++||++.. +....+.+|...|.+
T Consensus 140 --~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~ 217 (316)
T 3bg1_A 140 --WEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRD 217 (316)
T ss_dssp --EEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEE
T ss_pred --cceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEE
Confidence 11123346788889999999952 368999999999999999754 466778899999999
Q ss_pred EEEccCC----CEEEEEecCCCeEEEEeCCCCce---EEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcC
Q 014125 271 VQFSRDG----NYLYTGGRKDPYILCWDLRKAVQ---VVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQ 342 (430)
Q Consensus 271 ~~~~~~~----~~l~~~~~~d~~i~i~d~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 342 (430)
++|+|++ .+|++++ .|++|++|++++... ....+ ..|...|.+++|+|++++|++++.||.|++|+..
T Consensus 218 v~~sp~~~~~~~~las~s-~D~~v~iw~~~~~~~~~~~~~~~---~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 218 VAWAPSIGLPTSTIASCS-QDGRVFIWTCDDASSNTWSPKLL---HKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EECCCCSSCSCCEEEEEE-TTCEEEEEECSSTTCCCCBCCEE---EECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred EEecCCCCCCCceEEEEc-CCCeEEEEEccCccccchhhhhh---hcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 9999986 7899999 999999999976311 11111 3467899999999999999999999999999976
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-38 Score=291.72 Aligned_cols=287 Identities=15% Similarity=0.273 Sum_probs=231.0
Q ss_pred eeecccCCCce-eEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecccc
Q 014125 53 FRTSSIPNNFL-KGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (430)
Q Consensus 53 ~~~~~~h~~~v-~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (430)
...+.+|.+.| .++.+ ++++|++|+.||+|++||+.+++... ....|...|.+++|
T Consensus 114 ~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~-----------------~~~~h~~~V~~l~~---- 170 (464)
T 3v7d_B 114 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLL-----------------QLSGHDGGVWALKY---- 170 (464)
T ss_dssp EEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEE-----------------EECCCSSCEEEEEE----
T ss_pred eEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEE-----------------EEeCCCcCEEEEEE----
Confidence 34778999885 56555 56899999999999999998764321 22357789999999
Q ss_pred CccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEEC--CCCcEEE-EEcCCeEEEEEcCCCCCcc
Q 014125 132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFN--PTGTKIF-AGYNKSVRVFDVHRPGRDF 208 (430)
Q Consensus 132 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~-~~~d~~i~v~d~~~~~~~~ 208 (430)
++++ .|++|+.||+|++||+.+++....+..+.. .|.+++|+ +++.+++ ++.|+.|++||++......
T Consensus 171 ---~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~-----~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~ 241 (464)
T 3v7d_B 171 ---AHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNS-----TVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVP 241 (464)
T ss_dssp ---CSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSS-----CEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC-
T ss_pred ---cCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCC-----ccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccc
Confidence 4555 899999999999999999998888877665 89999998 5677777 4589999999998754321
Q ss_pred ccccc---------------ccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEE
Q 014125 209 EKYST---------------LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQF 273 (430)
Q Consensus 209 ~~~~~---------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~ 273 (430)
..... ......+|...+.++. + ++.++++|+.||.|++||+++++.+..+.+|...|.+++|
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 318 (464)
T 3v7d_B 242 DHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS--G-HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIY 318 (464)
T ss_dssp -----CCSSEEESCGGGCTTEEEEECCCSSCEEEEE--E-ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred cccccCCcceEeeccCCCeEEEEEccCccceEEEEc--C-CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEE
Confidence 10000 1123456777888875 4 5569999999999999999999999999999999999999
Q ss_pred ccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccc
Q 014125 274 SRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAA 353 (430)
Q Consensus 274 ~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 353 (430)
+|+++++++++ .||.|++||++++... ..+ .+|...|.+++|+ +.+|++|+.||.|++||+.+++...... +
T Consensus 319 ~~~~~~l~sg~-~dg~i~vwd~~~~~~~-~~~---~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~ 390 (464)
T 3v7d_B 319 DHERKRCISAS-MDTTIRIWDLENGELM-YTL---QGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH-H 390 (464)
T ss_dssp ETTTTEEEEEE-TTSCEEEEETTTTEEE-EEE---CCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE-C
T ss_pred cCCCCEEEEEe-CCCcEEEEECCCCcEE-EEE---eCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec-C
Confidence 99999999999 9999999999987533 232 5788999999997 5799999999999999999987766554 6
Q ss_pred cCCeeEEEEcCCCcEEEEeeCCceeeecCC
Q 014125 354 ADTVNGFSFHPFLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 354 ~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~ 383 (430)
...+..++|+|++.+|++++ |+.+++|+.
T Consensus 391 ~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~ 419 (464)
T 3v7d_B 391 TNLSAITTFYVSDNILVSGS-ENQFNIYNL 419 (464)
T ss_dssp TTCCCEEEEEECSSEEEEEE-TTEEEEEET
T ss_pred CCCccEEEEEeCCCEEEEec-CCeEEEEEC
Confidence 66788899999999999987 666666654
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-38 Score=286.34 Aligned_cols=284 Identities=16% Similarity=0.252 Sum_probs=226.7
Q ss_pred ceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceE
Q 014125 62 FLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF 141 (430)
Q Consensus 62 ~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 141 (430)
.++.|+||++ +.||+|. |++|+|||..+++....+ ....|...|++++| +|+|++|
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~---------------~~~~~~~~V~sv~f-------spdg~~l 162 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLL---------------QMEQPGEYISSVAW-------IKEGNYL 162 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEE---------------ECCSTTCCEEEEEE-------CTTSSEE
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEE---------------EecCCCCcEEEEEE-------CCCCCEE
Confidence 4778999985 5777765 899999999887532111 11245678999999 7799999
Q ss_pred EEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCCcccccccccCCCCC
Q 014125 142 ASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFEKYSTLKGNKEG 220 (430)
Q Consensus 142 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~ 220 (430)
++|+.||.|++||+.+++.+..+..|.. .+.+++++ +.++++ +.|+.+++||........ ..+.+
T Consensus 163 asgs~Dg~v~iWd~~~~~~~~~~~~h~~-----~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~-------~~~~~ 228 (420)
T 4gga_A 163 AVGTSSAEVQLWDVQQQKRLRNMTSHSA-----RVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHV-------ATLSG 228 (420)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSS-----CEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEE-------EEEEC
T ss_pred EEEECCCeEEEEEcCCCcEEEEEeCCCC-----ceEEEeeC--CCEEEEEeCCCceeEeeecccceee-------EEecc
Confidence 9999999999999999999988887665 77777774 567774 599999999987643322 22367
Q ss_pred CCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCce----eeEEeeccccCeEEEEEccCCCEE-EEE-ecCCCeEEEEe
Q 014125 221 QAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME----LLYVLHGQEGGVTHVQFSRDGNYL-YTG-GRKDPYILCWD 294 (430)
Q Consensus 221 ~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l-~~~-~~~d~~i~i~d 294 (430)
|...+..+.++| .+..+++++.|+.+++|+..+++ .+.....|...|.+++|+|++..+ +++ ++.|+.|++||
T Consensus 229 h~~~~~~~~~~~-~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd 307 (420)
T 4gga_A 229 HSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWN 307 (420)
T ss_dssp CSSCEEEEEECT-TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEE
T ss_pred cccceeeeeecC-CCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEe
Confidence 888999999999 67799999999999999998764 355667788999999999977644 433 33799999999
Q ss_pred CCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEc--cCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEe
Q 014125 295 LRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGG--QDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASS 372 (430)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 372 (430)
++++.... .+ .+...+.++.|+|+++.+++++ .|+.|+|||+.+++++..+.+|.+.|++++|+|+|++|+||
T Consensus 308 ~~t~~~~~-~~----~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~ 382 (420)
T 4gga_A 308 VCSGACLS-AV----DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASA 382 (420)
T ss_dssp TTTTEEEE-EE----ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEE
T ss_pred CCccccce-ee----ccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEE
Confidence 99885443 22 2456788999999999888765 78999999999999999999999999999999999999999
Q ss_pred eCCceeeecCCCccccccCCCcEEEEeecccccc
Q 014125 373 SGHRRFPVDDFEDLHLSGDENCVSVWSFLYASMM 406 (430)
Q Consensus 373 ~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~~~ 406 (430)
+. |++|++|++......
T Consensus 383 s~-----------------D~tvriWdv~~~~~~ 399 (420)
T 4gga_A 383 AA-----------------DETLRLWRCFELDPA 399 (420)
T ss_dssp ET-----------------TTEEEEECCSCSSCC
T ss_pred ec-----------------CCeEEEEECCCCCcc
Confidence 85 566666666544333
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-38 Score=279.80 Aligned_cols=270 Identities=18% Similarity=0.187 Sum_probs=203.4
Q ss_pred eecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCc--eeeeeecccccccccceEEEEECCCCcEEEE-E
Q 014125 115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGL--LRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-G 191 (430)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~ 191 (430)
...|..+|++++| +++ +|++|+.|+.|++||+..+. ....+.. ..|...|.+++|+|++.+|++ +
T Consensus 10 ~~~h~~~v~~~~~-------s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~---~~h~~~v~~v~~sp~~~~las~s 77 (330)
T 2hes_X 10 LKLYKEKIWSFDF-------SQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDE---TAHKKAIRSVAWRPHTSLLAAGS 77 (330)
T ss_dssp EECCSSCEEEEEE-------ETT--EEEEEESSSCEEEEECSSSCCEEEEEECT---TCCCSCEEEEEECTTSSEEEEEE
T ss_pred eccCCCceeeecc-------CCC--EEEEEcCCCEEEEEEecCCCeEEEEEEec---CCccCCEEEEEECCCCCEEEEEe
Confidence 4467789999999 444 99999999999999998753 3333311 113348999999999999985 5
Q ss_pred cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCc----eeeEEeeccccC
Q 014125 192 YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM----ELLYVLHGQEGG 267 (430)
Q Consensus 192 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~----~~~~~~~~~~~~ 267 (430)
.|+.|++||+........ .......+.+|...|.+++|+| ++.+|++|+.|++|++||++.. +.+..+.+|...
T Consensus 78 ~D~~v~iw~~~~~~~~~~-~~~~~~~~~~h~~~V~~v~~sp-~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~ 155 (330)
T 2hes_X 78 FDSTVSIWAKEESADRTF-EMDLLAIIEGHENEVKGVAWSN-DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQD 155 (330)
T ss_dssp TTSCEEEEEC-------C-CCEEEEEEC----CEEEEEECT-TSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSC
T ss_pred CCCcEEEEEcccCcCccc-cceeEEEEcCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCc
Confidence 899999999864221100 0112223468889999999999 6779999999999999999532 466778899999
Q ss_pred eEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCC--CCEEEEEccCCcEEEEEcCCC-
Q 014125 268 VTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPS--GRHLGTGGQDGLVHIYDLQTG- 344 (430)
Q Consensus 268 i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~vwd~~~~- 344 (430)
|.+++|+|++.+|++++ .|+.|++||....... ......+|...|.+++|+|+ +.+|++|+.|+.|++||+.++
T Consensus 156 v~~v~~~p~~~~l~s~s-~D~~i~iW~~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~ 232 (330)
T 2hes_X 156 VKHVIWHPSEALLASSS-YDDTVRIWKDYDDDWE--CVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDD 232 (330)
T ss_dssp EEEEEECSSSSEEEEEE-TTSCEEEEEEETTEEE--EEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEEC
T ss_pred eEEEEECCCCCEEEEEc-CCCeEEEEECCCCCee--EEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCC
Confidence 99999999999999999 9999999998765322 12233678999999999998 678999999999999999764
Q ss_pred -------Ceeccccc-ccCCeeEEEEcCCCcEEEEeeCCceeeecCC-------------------------------Cc
Q 014125 345 -------KWISGFQA-AADTVNGFSFHPFLPMAASSSGHRRFPVDDF-------------------------------ED 385 (430)
Q Consensus 345 -------~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~-------------------------------~~ 385 (430)
.....+.. |...|.+++|++++ +|++++.|+.+++|+. ..
T Consensus 233 ~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~ 311 (330)
T 2hes_X 233 EDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTI 311 (330)
T ss_dssp TTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CC
T ss_pred ccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceE
Confidence 33444544 88999999999765 8999999999998842 12
Q ss_pred cccccCCCcEEEEeecc
Q 014125 386 LHLSGDENCVSVWSFLY 402 (430)
Q Consensus 386 l~~~~~d~~i~~w~~~~ 402 (430)
|++++.|++|++|++..
T Consensus 312 las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 312 LATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEEEETTSEEEEEEC--
T ss_pred EEEecCCCcEEEEEecc
Confidence 56677788888887653
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-38 Score=287.12 Aligned_cols=277 Identities=18% Similarity=0.295 Sum_probs=229.5
Q ss_pred ceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecccc
Q 014125 52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (430)
Q Consensus 52 ~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (430)
....+.+|.+.|.. +++++|++|++|+.||+|++||+.+++.... ...|...|.+++|.
T Consensus 110 ~~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~-----------------~~~h~~~v~~~~~~--- 168 (445)
T 2ovr_B 110 SPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRT-----------------LVGHTGGVWSSQMR--- 168 (445)
T ss_dssp CCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEE-----------------CCCCSSCEEEEEEE---
T ss_pred eeEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEEE-----------------EcCCCCCEEEEEec---
Confidence 34578899997643 3555789999999999999999987643322 23466889999993
Q ss_pred CccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCcccc
Q 014125 132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEK 210 (430)
Q Consensus 132 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~ 210 (430)
+.++++|+.||.|++||+.+++....+..+.. .|.++.|+ +..++ ++.|+.|++||+..+.
T Consensus 169 ------~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~-----~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~----- 230 (445)
T 2ovr_B 169 ------DNIIISGSTDRTLKVWNAETGECIHTLYGHTS-----TVRCMHLH--EKRVVSGSRDATLRVWDIETGQ----- 230 (445)
T ss_dssp ------TTEEEEEETTSCEEEEETTTTEEEEEECCCSS-----CEEEEEEE--TTEEEEEETTSEEEEEESSSCC-----
T ss_pred ------CCEEEEEeCCCeEEEEECCcCcEEEEECCCCC-----cEEEEEec--CCEEEEEeCCCEEEEEECCCCc-----
Confidence 56999999999999999999998888877665 89999995 44566 6699999999998632
Q ss_pred cccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeE
Q 014125 211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYI 290 (430)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i 290 (430)
......+|...+.+++| ++..+++|+.||.|++||+++++.+..+.+|...|.+++| ++.++++++ .|+.|
T Consensus 231 ---~~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~-~d~~i 301 (445)
T 2ovr_B 231 ---CLHVLMGHVAAVRCVQY---DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGS-LDTSI 301 (445)
T ss_dssp ---EEEEEECCSSCEEEEEE---CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEE-TTSCE
T ss_pred ---EEEEEcCCcccEEEEEE---CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEe-CCCeE
Confidence 12223567889999999 4458999999999999999999999999999999999999 788999999 99999
Q ss_pred EEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccccc---ccCCeeEEEEcCCCc
Q 014125 291 LCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQA---AADTVNGFSFHPFLP 367 (430)
Q Consensus 291 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---~~~~v~~~~~~~~~~ 367 (430)
++||++++.... .+ ..|...+.++.++ +.+|++|+.||.|++||+++++.+..+.. |...|.+++|+ ++
T Consensus 302 ~i~d~~~~~~~~-~~---~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~ 373 (445)
T 2ovr_B 302 RVWDVETGNCIH-TL---TGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KN 373 (445)
T ss_dssp EEEETTTCCEEE-EE---CCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SS
T ss_pred EEEECCCCCEEE-EE---cCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CC
Confidence 999999875432 22 4677888888774 67999999999999999999999888876 88899999996 58
Q ss_pred EEEEeeCCceeeecCCC
Q 014125 368 MAASSSGHRRFPVDDFE 384 (430)
Q Consensus 368 ~l~s~~~d~~~~vw~~~ 384 (430)
+|++++.||.|++|+..
T Consensus 374 ~l~s~~~dg~v~iwd~~ 390 (445)
T 2ovr_B 374 FVITSSDDGTVKLWDLK 390 (445)
T ss_dssp EEEEEETTSEEEEEETT
T ss_pred EEEEEeCCCeEEEEECC
Confidence 99999999999999654
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-38 Score=280.99 Aligned_cols=295 Identities=13% Similarity=0.108 Sum_probs=231.0
Q ss_pred eeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccC
Q 014125 53 FRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS 132 (430)
Q Consensus 53 ~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 132 (430)
+....+|.+.|++++|+|++++|++++.||.|++|++.++.. .........|...|.+++|
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~--------------~~~~~~~~~~~~~v~~~~~----- 64 (342)
T 1yfq_A 4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK--------------NVDLLQSLRYKHPLLCCNF----- 64 (342)
T ss_dssp EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTT--------------EEEEEEEEECSSCEEEEEE-----
T ss_pred eecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCc--------------cccceeeeecCCceEEEEE-----
Confidence 446679999999999999999999999999999999976531 0112233467789999999
Q ss_pred ccCCCCc-eEEEEeCCCcEEEEec-cCCceeeeeec--ccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCc
Q 014125 133 ASDPTSC-VFASTTRDHPIHLWDA-TTGLLRCTYRA--YDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRD 207 (430)
Q Consensus 133 ~~~~~~~-~l~~~~~dg~i~vwd~-~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~ 207 (430)
+|++. +|++++.||.|++||+ .+++. ..+.. +. ..|.+++|+| +.+++ ++.|+.|++||++.....
T Consensus 65 --~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~-----~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~ 135 (342)
T 1yfq_A 65 --IDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEAN-----LGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDG 135 (342)
T ss_dssp --EESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCC-----SCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTB
T ss_pred --CCCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCC-----CceEEEEeCC-CCEEEEEcCCCeEEEEcccccccc
Confidence 56799 9999999999999999 87765 44443 33 3899999999 87877 559999999998741100
Q ss_pred c-cccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCC-ce--eeEEeeccccCeEEEEEcc-CCCEEEE
Q 014125 208 F-EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN-ME--LLYVLHGQEGGVTHVQFSR-DGNYLYT 282 (430)
Q Consensus 208 ~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~-~~--~~~~~~~~~~~i~~~~~~~-~~~~l~~ 282 (430)
. .......... .+...+.+++|+|+. +++++.++.|++||+++ +. .......|...+.+++|+| +++++++
T Consensus 136 ~~~~~~~~~~~~-~~~~~v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~ 211 (342)
T 1yfq_A 136 VIAVKNLNSNNT-KVKNKIFTMDTNSSR---LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYAC 211 (342)
T ss_dssp CEEEEESCSSSS-SSCCCEEEEEECSSE---EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEE
T ss_pred cccccCCeeeEE-eeCCceEEEEecCCc---EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEE
Confidence 0 0000111112 267889999999843 99999999999999988 54 3334456788999999999 9999999
Q ss_pred EecCCCeEEEEeCCCC-----ceEEEEeeccc------CCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccc
Q 014125 283 GGRKDPYILCWDLRKA-----VQVVYKLYRSS------EHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQ 351 (430)
Q Consensus 283 ~~~~d~~i~i~d~~~~-----~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 351 (430)
++ .||.|++|+++.. ......+.... .|...|.+++|+|++++|++++.||.|++||+.+++.+..+.
T Consensus 212 ~~-~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 290 (342)
T 1yfq_A 212 SS-IDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA 290 (342)
T ss_dssp EE-TTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC
T ss_pred Ee-cCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhh
Confidence 99 9999999999876 12222221111 234589999999999999999999999999999999999999
Q ss_pred cc-cCCeeEEEEcCCCcEEEEeeCCce-eeecC
Q 014125 352 AA-ADTVNGFSFHPFLPMAASSSGHRR-FPVDD 382 (430)
Q Consensus 352 ~~-~~~v~~~~~~~~~~~l~s~~~d~~-~~vw~ 382 (430)
+| ...|.+++ |++++|++++.||. .+.+.
T Consensus 291 ~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 291 KFNEDSVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp CCSSSEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred cccCCCceEec--CCCCeEEEEecCCccccccc
Confidence 98 99999999 99999999998887 44443
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-38 Score=281.06 Aligned_cols=311 Identities=17% Similarity=0.245 Sum_probs=219.4
Q ss_pred eecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCc
Q 014125 54 RTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (430)
Q Consensus 54 ~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (430)
..+.+|.+.|++++|+|++++||+|+.||.|++||+.++... .........|...|.+++|+|
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~-------------~~~~~~~~~~~~~v~~~~~~~---- 67 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSN-------------WELSDSWRAHDSSIVAIDWAS---- 67 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCC-------------EEEEEEEECCSSCEEEEEECC----
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCc-------------ceecceeccCCCcEEEEEEcC----
Confidence 467899999999999999999999999999999999864221 011223345778999999943
Q ss_pred cCCCCceEEEEeCCCcEEEEeccCC---------ceeeeeecccccccccceEEEEECCC--CcEEE-EEcCCeEEEEEc
Q 014125 134 SDPTSCVFASTTRDHPIHLWDATTG---------LLRCTYRAYDAVDEITAAFSVAFNPT--GTKIF-AGYNKSVRVFDV 201 (430)
Q Consensus 134 ~~~~~~~l~~~~~dg~i~vwd~~~~---------~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~-~~~d~~i~v~d~ 201 (430)
..++.+|++++.||.|++||+.++ +....+..+.. .|.+++|+|+ +.+++ ++.|+.|++||+
T Consensus 68 -~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~ 141 (351)
T 3f3f_A 68 -PEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKG-----SLYSVKFAPAHLGLKLACLGNDGILRLYDA 141 (351)
T ss_dssp -GGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSS-----CEEEEEECCGGGCSEEEEEETTCEEEEEEC
T ss_pred -CCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCC-----ceeEEEEcCCCCCcEEEEecCCCcEEEecC
Confidence 115889999999999999999887 33455554443 8999999999 88888 458999999999
Q ss_pred CCCCCcccc-----cccccCCCCCCCcceEEEEEcCC--CCceEEEecCCCeEEEEEcCCcee--eEEeeccccCeEEEE
Q 014125 202 HRPGRDFEK-----YSTLKGNKEGQAGIMSAIAFSPT--HTGMLAIGSYSQTSAIYREDNMEL--LYVLHGQEGGVTHVQ 272 (430)
Q Consensus 202 ~~~~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~v~~~d~~~~~~--~~~~~~~~~~i~~~~ 272 (430)
+........ ..........+...+.+++|+|+ .+.++++++.++.+.+|+...++. +..+.+|...|++++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~ 221 (351)
T 3f3f_A 142 LEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSIS 221 (351)
T ss_dssp SSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEE
T ss_pred CChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEE
Confidence 875432111 11112223467788999999995 378999999999998888877764 677888999999999
Q ss_pred EccCC----CEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEE----ccCCcEEEEEcCCC
Q 014125 273 FSRDG----NYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTG----GQDGLVHIYDLQTG 344 (430)
Q Consensus 273 ~~~~~----~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----~~dg~i~vwd~~~~ 344 (430)
|+|++ ++|++++ .||.|++||++........ ............++....++.+ .....+.+|+....
T Consensus 222 ~~p~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (351)
T 3f3f_A 222 WAPSIGRWYQLIATGC-KDGRIRIFKITEKLSPLAS----EESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQV 296 (351)
T ss_dssp ECCCSSCSSEEEEEEE-TTSCEEEEEEEECC-------------------------------------------CCSEEE
T ss_pred ECCCCCCcceEEEEEc-CCCeEEEEeCCCCcCcccc----CCcccceeccCCCcccccccccccccccceeeeecccccc
Confidence 99998 7899998 9999999999876433221 1222233333344444343333 33455677777777
Q ss_pred CeecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCCCccccccCCCcEEEEeeccccccccc
Q 014125 345 KWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYASMMENA 409 (430)
Q Consensus 345 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~~~~~~ 409 (430)
+.+..+.+|...|++++|+|++++|++++ .|+.|++|++..++.+..+
T Consensus 297 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~-----------------~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 297 ELLSEHDDHNGEVWSVSWNLTGTILSSAG-----------------DDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp EEEEEECTTSSCEEEEEECSSSCCEEEEE-----------------TTSCEEEEEECTTSCEEEE
T ss_pred cEEEEEecccccEEEEEEcCCCCEEEEec-----------------CCCcEEEEecCcCcchhhe
Confidence 88889999999999999999999999998 4677888887766554443
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-37 Score=272.30 Aligned_cols=278 Identities=15% Similarity=0.211 Sum_probs=220.5
Q ss_pred ceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceE
Q 014125 62 FLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF 141 (430)
Q Consensus 62 ~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 141 (430)
.+++|+||+++ +||+| .|++|+|||+.+++....+ ....|...|.+++| +|++++|
T Consensus 27 y~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~---------------~~~~~~~~V~~v~~-------~~~~~~l 82 (318)
T 4ggc_A 27 YLNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLL---------------QMEQPGEYISSVAW-------IKEGNYL 82 (318)
T ss_dssp TCBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEE---------------ECCSTTCCEEEEEE-------CTTSSEE
T ss_pred cceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEE---------------EecCCCCeEEEEEE-------CCCCCEE
Confidence 36789999986 77766 4899999999887542211 12246678999999 7789999
Q ss_pred EEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCCcccccccccCCCCC
Q 014125 142 ASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFEKYSTLKGNKEG 220 (430)
Q Consensus 142 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~ 220 (430)
++|+.||+|++||+.+++.+..+..+.. .+.++. +++..+++ +.++.+++|+........ ....+
T Consensus 83 ~sgs~Dg~v~iw~~~~~~~~~~~~~h~~-----~~~~~~--~~~~~l~s~~~~~~~~~~~~~~~~~~~-------~~~~~ 148 (318)
T 4ggc_A 83 AVGTSSAEVQLWDVQQQKRLRNMTSHSA-----RVGSLS--WNSYILSSGSRSGHIHHHDVRVAEHHV-------ATLSG 148 (318)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCSS-----CEEEEE--EETTEEEEEETTSEEEEEETTSSSCEE-------EEEEC
T ss_pred EEEECCCcEEEeecCCceeEEEecCccc-----eEEEee--cCCCEEEEEecCCceEeeecCCCceeE-------EEEcC
Confidence 9999999999999999999988887654 555544 45677774 589999999987643221 22357
Q ss_pred CCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCcee----eEEeeccccCeEEEEEccCCCEEE--EEecCCCeEEEEe
Q 014125 221 QAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL----LYVLHGQEGGVTHVQFSRDGNYLY--TGGRKDPYILCWD 294 (430)
Q Consensus 221 ~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~--~~~~~d~~i~i~d 294 (430)
|...+..+.+.+ .+.++++++.|+.|++||+++++. ......+.+.|.+++++|++..++ .++..++.|++||
T Consensus 149 ~~~~~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd 227 (318)
T 4ggc_A 149 HSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWN 227 (318)
T ss_dssp CSSCEEEEEECT-TSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEE
T ss_pred ccCceEEEEEcC-CCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEe
Confidence 788899999999 677999999999999999987653 345556788999999999876443 2333789999999
Q ss_pred CCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEc--cCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEe
Q 014125 295 LRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGG--QDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASS 372 (430)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 372 (430)
.+....... ..+...+..+.|+|++..+++++ .|+.|++||+++++++..+.+|.+.|++++|+|++++|+++
T Consensus 228 ~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~ 302 (318)
T 4ggc_A 228 VCSGACLSA-----VDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASA 302 (318)
T ss_dssp TTTCCEEEE-----EECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEE
T ss_pred ccccccccc-----ccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEE
Confidence 988754432 24667789999999998877654 79999999999999999999999999999999999999999
Q ss_pred eCCceeeecCC
Q 014125 373 SGHRRFPVDDF 383 (430)
Q Consensus 373 ~~d~~~~vw~~ 383 (430)
+.|+.|+||+.
T Consensus 303 s~D~~v~iWd~ 313 (318)
T 4ggc_A 303 AADETLRLWRC 313 (318)
T ss_dssp ETTTEEEEECC
T ss_pred ecCCeEEEEEC
Confidence 97665555554
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-39 Score=290.67 Aligned_cols=244 Identities=12% Similarity=0.142 Sum_probs=196.7
Q ss_pred CCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCC--ceeeeeecccccccccceEEEEECCCCcEEEE-EcCC
Q 014125 118 EGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTG--LLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNK 194 (430)
Q Consensus 118 ~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~ 194 (430)
+..+|.+++| +|++++|++++.||.|++||+.++ +....+..|.. .|.+++|+|++++|++ +.|+
T Consensus 10 ~~~~v~~~~~-------s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~-----~v~~~~~s~~~~~l~s~s~d~ 77 (377)
T 3dwl_C 10 LPKPSYEHAF-------NSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDK-----IVTCVDWAPKSNRIVTCSQDR 77 (377)
T ss_dssp CSSCCSCCEE-------CSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSS-----CEEEEEECTTTCCEEEEETTS
T ss_pred CCCcEEEEEE-------CCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCc-----eEEEEEEeCCCCEEEEEeCCC
Confidence 4568999999 778999999999999999999988 56666665554 8999999999998885 5899
Q ss_pred eEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCce---eeEEeec-cccCeEE
Q 014125 195 SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME---LLYVLHG-QEGGVTH 270 (430)
Q Consensus 195 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~---~~~~~~~-~~~~i~~ 270 (430)
.|++||+..... . .......+|...|.+++|+| ++.+|++++.|+.|++||+++++ ....+.. |...|.+
T Consensus 78 ~v~vwd~~~~~~-~----~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~ 151 (377)
T 3dwl_C 78 NAYVYEKRPDGT-W----KQTLVLLRLNRAATFVRWSP-NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILS 151 (377)
T ss_dssp SEEEC------C-C----CCEEECCCCSSCEEEEECCT-TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEE
T ss_pred eEEEEEcCCCCc-e----eeeeEecccCCceEEEEECC-CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEE
Confidence 999999987531 0 11122356888999999999 67799999999999999999876 4667777 9999999
Q ss_pred EEEccCCCEEEEEecCCCeEEEEeCCCCc--------------eEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcE
Q 014125 271 VQFSRDGNYLYTGGRKDPYILCWDLRKAV--------------QVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLV 336 (430)
Q Consensus 271 ~~~~~~~~~l~~~~~~d~~i~i~d~~~~~--------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 336 (430)
++|+|++++|++++ .|+.|++||++... ......... .|...|.+++|+|++++|++++.||.|
T Consensus 152 ~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i 229 (377)
T 3dwl_C 152 LDWHPNNVLLAAGC-ADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSV 229 (377)
T ss_dssp EEECTTSSEEEEEE-SSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEE
T ss_pred EEEcCCCCEEEEEe-CCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcE
Confidence 99999999999999 99999999986321 111122233 788999999999999999999999999
Q ss_pred EEEEcCCCCe----ecccccccCCeeEEEEcCCCcEEEEeeCCceeeec
Q 014125 337 HIYDLQTGKW----ISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVD 381 (430)
Q Consensus 337 ~vwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw 381 (430)
++||+.+++. +..+.+|...|.+++|+|++++|++++.++.+.+|
T Consensus 230 ~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~ 278 (377)
T 3dwl_C 230 TIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQ 278 (377)
T ss_dssp C-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEEC
T ss_pred EEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEE
Confidence 9999999988 88899999999999999999999999877777544
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-37 Score=272.71 Aligned_cols=250 Identities=18% Similarity=0.271 Sum_probs=204.0
Q ss_pred ceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecccc
Q 014125 52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (430)
Q Consensus 52 ~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (430)
..+.+.+|...|++++|+|+|++|++|+.|++|++||+.+++.. .....|...|.+++|
T Consensus 57 ~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~-----------------~~~~~h~~~v~~~~~---- 115 (319)
T 3frx_A 57 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETY-----------------QRFVGHKSDVMSVDI---- 115 (319)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE-----------------EEEECCSSCEEEEEE----
T ss_pred cceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCee-----------------EEEccCCCcEEEEEE----
Confidence 35678899999999999999999999999999999999876432 233457789999999
Q ss_pred CccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCC------cEEE-EEcCCeEEEEEcCCC
Q 014125 132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG------TKIF-AGYNKSVRVFDVHRP 204 (430)
Q Consensus 132 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~l~-~~~d~~i~v~d~~~~ 204 (430)
+|++.+|++|+.|++|++||+.. +.+..+..+.. .|.++.|+|.. ..++ ++.|+.|++||++..
T Consensus 116 ---~~~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~-----~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~ 186 (319)
T 3frx_A 116 ---DKKASMIISGSRDKTIKVWTIKG-QCLATLLGHND-----WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF 186 (319)
T ss_dssp ---CTTSCEEEEEETTSCEEEEETTS-CEEEEECCCSS-----CEEEEEECCC------CCEEEEEETTSCEEEEETTTT
T ss_pred ---cCCCCEEEEEeCCCeEEEEECCC-CeEEEEeccCC-----cEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcc
Confidence 77899999999999999999964 45556655544 89999999854 3666 569999999999763
Q ss_pred CCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEe
Q 014125 205 GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGG 284 (430)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 284 (430)
.....+.+|...|.+++|+| ++.+|++|+.||+|++||+++++.+..+.. ...|.+++|+|++.+|++++
T Consensus 187 --------~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~la~~~ 256 (319)
T 3frx_A 187 --------QIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPNRYWLAAAT 256 (319)
T ss_dssp --------EEEEEECCCCSCEEEEEECT-TSSEEEEEETTCEEEEEETTTTEEEEEEEC-CSCEEEEEECSSSSEEEEEE
T ss_pred --------hhheeecCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEecC-CCcEEEEEEcCCCCEEEEEc
Confidence 22223467889999999999 677999999999999999999999888874 46899999999999988876
Q ss_pred cCCCeEEEEeCCCCceEEEEeec-----ccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCC
Q 014125 285 RKDPYILCWDLRKAVQVVYKLYR-----SSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTG 344 (430)
Q Consensus 285 ~~d~~i~i~d~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 344 (430)
++.+++|++....... .+.. ...+...+.+++|+|+|++|++|+.||.|+|||+.++
T Consensus 257 --~~~i~v~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 257 --ATGIKVFSLDPQYLVD-DLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp --TTEEEEEEETTEEEEE-EECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred --CCCcEEEEeCcCeeee-ccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 5669999998753322 2211 1234667899999999999999999999999998764
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-37 Score=269.79 Aligned_cols=247 Identities=14% Similarity=0.168 Sum_probs=196.4
Q ss_pred eecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCC--ceeeeeecccccccccceEEEEECCC--CcEEE-
Q 014125 115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTG--LLRCTYRAYDAVDEITAAFSVAFNPT--GTKIF- 189 (430)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~- 189 (430)
...|...|++++| +|++++|++|+.|++|++||+..+ +.+..+..|.. +|.+++|+++ +.+|+
T Consensus 5 ~~~h~~~V~~~~~-------s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~-----~V~~v~~s~~~~g~~l~s 72 (297)
T 2pm7_B 5 ANAHNEMIHDAVM-------DYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEG-----PVWRVDWAHPKFGTILAS 72 (297)
T ss_dssp CCSCSSCEEEEEE-------CTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSS-----CEEEEEECCGGGCSEEEE
T ss_pred ccCCcCceEEEEE-------CCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccC-----CeEEEEecCCCcCCEEEE
Confidence 3457789999999 779999999999999999999753 55667766655 9999999864 78888
Q ss_pred EEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCC-CceEEEecCCCeEEEEEcCCce--eeEEeecccc
Q 014125 190 AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTH-TGMLAIGSYSQTSAIYREDNME--LLYVLHGQEG 266 (430)
Q Consensus 190 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~~~d~~~~~--~~~~~~~~~~ 266 (430)
++.|++|++||++.+... ......+|...|.+++|+|+. +.+|++++.|++|++||++++. ....+.+|..
T Consensus 73 ~s~D~~v~iWd~~~~~~~------~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~ 146 (297)
T 2pm7_B 73 CSYDGKVMIWKEENGRWS------QIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAI 146 (297)
T ss_dssp EETTTEEEEEEBSSSCBC------CCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSS
T ss_pred EcCCCEEEEEEcCCCceE------EEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccC
Confidence 558999999999763210 111235678899999999952 6799999999999999998763 2456778999
Q ss_pred CeEEEEEccC-------------CCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCC---CEEEEE
Q 014125 267 GVTHVQFSRD-------------GNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSG---RHLGTG 330 (430)
Q Consensus 267 ~i~~~~~~~~-------------~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~ 330 (430)
.|.+++|+|+ +++|++++ .|+.|++||+++............+|...|.+++|+|++ .+|+++
T Consensus 147 ~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs-~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~ 225 (297)
T 2pm7_B 147 GVNSASWAPATIEEDGEHNGTKESRKFVTGG-ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASV 225 (297)
T ss_dssp CEEEEEECCCC------------CCEEEEEE-TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEE
T ss_pred ccceEeecCCcccccccCCCCCCcceEEEEc-CCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEE
Confidence 9999999997 56899999 999999999987653322223346899999999999985 899999
Q ss_pred ccCCcEEEEEcCCCCe---eccc--ccccCCeeEEEEcCCCcEEEEeeCCceeee
Q 014125 331 GQDGLVHIYDLQTGKW---ISGF--QAAADTVNGFSFHPFLPMAASSSGHRRFPV 380 (430)
Q Consensus 331 ~~dg~i~vwd~~~~~~---~~~~--~~~~~~v~~~~~~~~~~~l~s~~~d~~~~v 380 (430)
+.|++|+|||+++... ...+ ..|...|.+++|+|++++|++++.|+.+++
T Consensus 226 s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~l 280 (297)
T 2pm7_B 226 SQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTL 280 (297)
T ss_dssp ETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEE
T ss_pred ECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEE
Confidence 9999999999987531 1222 467889999999999999999985433333
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-37 Score=275.93 Aligned_cols=261 Identities=17% Similarity=0.253 Sum_probs=202.3
Q ss_pred ecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCcc
Q 014125 55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS 134 (430)
Q Consensus 55 ~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 134 (430)
...+|.+.|++++|+|+|++||+|+.|++|+||++..+.. ........|...|.+++|
T Consensus 56 ~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~---------------~~~~~~~~h~~~v~~v~~------- 113 (345)
T 3fm0_A 56 LSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDF---------------ECVTTLEGHENEVKSVAW------- 113 (345)
T ss_dssp ECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-E---------------EEEEEECCCSSCEEEEEE-------
T ss_pred eccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCe---------------EEEEEccCCCCCceEEEE-------
Confidence 3478999999999999999999999999999999875421 112233457789999999
Q ss_pred CCCCceEEEEeCCCcEEEEeccCCce---eeeeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCCcccc
Q 014125 135 DPTSCVFASTTRDHPIHLWDATTGLL---RCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFEK 210 (430)
Q Consensus 135 ~~~~~~l~~~~~dg~i~vwd~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~~~ 210 (430)
+|++++|++|+.|+.|++||+.++.. +..+..+. ..|.+++|+|++.+|++ +.|+.|++||++....
T Consensus 114 sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~-----~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~---- 184 (345)
T 3fm0_A 114 APSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHT-----QDVKHVVWHPSQELLASASYDDTVKLYREEEDDW---- 184 (345)
T ss_dssp CTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCC-----SCEEEEEECSSSSCEEEEETTSCEEEEEEETTEE----
T ss_pred eCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcC-----CCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCE----
Confidence 77899999999999999999987643 33444443 38999999999999985 5899999999875321
Q ss_pred cccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCc---------------eeeEEeec-cccCeEEEEEc
Q 014125 211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM---------------ELLYVLHG-QEGGVTHVQFS 274 (430)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~---------------~~~~~~~~-~~~~i~~~~~~ 274 (430)
.....+.+|...|.+++|+| ++.+|++|+.|++|++||.... +.+..+.+ |...|.+++|+
T Consensus 185 --~~~~~~~~h~~~v~~l~~sp-~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~ 261 (345)
T 3fm0_A 185 --VCCATLEGHESTVWSLAFDP-SGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWC 261 (345)
T ss_dssp --EEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEEC
T ss_pred --EEEEEecCCCCceEEEEECC-CCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEe
Confidence 11123467889999999999 6779999999999999996321 22334444 78899999999
Q ss_pred cCCCEEEEEecCCCeEEEEeCCCCce-----EEEEeecccCCccceEEEEEcCCC-CEEEEEccCCcEEEEEcCCCCeec
Q 014125 275 RDGNYLYTGGRKDPYILCWDLRKAVQ-----VVYKLYRSSEHTNQRILFDIEPSG-RHLGTGGQDGLVHIYDLQTGKWIS 348 (430)
Q Consensus 275 ~~~~~l~~~~~~d~~i~i~d~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~ 348 (430)
|++..|++++ .|+.|++|+...... .........+|...|++++|+|++ .+|++|+.||.|++|++.+++...
T Consensus 262 ~~~~~l~s~~-~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~ 340 (345)
T 3fm0_A 262 QLTGALATAC-GDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLH 340 (345)
T ss_dssp TTTCCEEEEE-TTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-----
T ss_pred cCCCEEEEEe-CCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcc
Confidence 9999999999 999999999875421 111122235789999999999998 599999999999999999887665
Q ss_pred cc
Q 014125 349 GF 350 (430)
Q Consensus 349 ~~ 350 (430)
.+
T Consensus 341 ~~ 342 (345)
T 3fm0_A 341 HH 342 (345)
T ss_dssp --
T ss_pred cc
Confidence 44
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-38 Score=287.54 Aligned_cols=287 Identities=12% Similarity=0.141 Sum_probs=221.5
Q ss_pred cccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccC
Q 014125 56 SSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASD 135 (430)
Q Consensus 56 ~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 135 (430)
+..| ..+....|+|++++||+|+.||.|++||+.++... .....|...|.+++| +
T Consensus 94 ~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-----------------~~~~~h~~~v~~~~~-------~ 148 (420)
T 3vl1_A 94 LKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQR-----------------EIDQAHVSEITKLKF-------F 148 (420)
T ss_dssp SCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEE-----------------EETTSSSSCEEEEEE-------C
T ss_pred EecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCccee-----------------eecccccCccEEEEE-------C
Confidence 3444 44555678999999999999999999998765321 122357789999999 6
Q ss_pred CCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCCcccccccc
Q 014125 136 PTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFEKYSTL 214 (430)
Q Consensus 136 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~ 214 (430)
|++.+|++++.||.|++||+.+++.+..+..+.. .|.+++|+|++.+|++ +.|+.|++||++..... ..+
T Consensus 149 ~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~----~~~ 219 (420)
T 3vl1_A 149 PSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRA-----TVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTI----HTF 219 (420)
T ss_dssp TTSSEEEEEETTSEEEEEETTTCCCCEEEECCSS-----CEEEEEEETTTTEEEEEETTSCEEEEETTTTEEE----EEE
T ss_pred CCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCC-----cEEEEEEcCCCCEEEEEcCCCcEEEeECCCCcee----EEe
Confidence 7899999999999999999999998888876665 8999999999999884 58999999999864221 111
Q ss_pred cCCCCCC---------------------CcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEee-ccccCeEEEE
Q 014125 215 KGNKEGQ---------------------AGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH-GQEGGVTHVQ 272 (430)
Q Consensus 215 ~~~~~~~---------------------~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~-~~~~~i~~~~ 272 (430)
.. ...+ ...+.+++|+| ++.+|++|+.||.|++||+++++....+. .|...|.+++
T Consensus 220 ~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~ 297 (420)
T 3vl1_A 220 NR-KENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT-YGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLT 297 (420)
T ss_dssp CB-TTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC-TTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEE
T ss_pred ec-CCCCCCCccEEEEecCCcceeeecccCcccceEEcC-CCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEE
Confidence 11 1122 23455555677 67799999999999999999988766664 5788999999
Q ss_pred EccCCC-EEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCe-----
Q 014125 273 FSRDGN-YLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKW----- 346 (430)
Q Consensus 273 ~~~~~~-~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~----- 346 (430)
|+|++. +|++++ .||.|++||+++.......+. ..+...+.++.+ +++++|++++.||.|++|++.....
T Consensus 298 ~~~~~~~~l~~g~-~dg~i~vwd~~~~~~~~~~~~--~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~ 373 (420)
T 3vl1_A 298 VDGNNANYIYAGY-ENGMLAQWDLRSPECPVGEFL--INEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAI 373 (420)
T ss_dssp ECSSCTTEEEEEE-TTSEEEEEETTCTTSCSEEEE--ESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEE
T ss_pred EeCCCCCEEEEEe-CCCeEEEEEcCCCcCchhhhh--ccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccce
Confidence 999999 899998 999999999998754332332 235667887755 5788999999999999999987422
Q ss_pred ----ecccccccCCeeEEEEcCCCc---EEEEeeCCceeeecC
Q 014125 347 ----ISGFQAAADTVNGFSFHPFLP---MAASSSGHRRFPVDD 382 (430)
Q Consensus 347 ----~~~~~~~~~~v~~~~~~~~~~---~l~s~~~d~~~~vw~ 382 (430)
...+..|.+.|.+++|+|++. .|++.+.+|.+.+|+
T Consensus 374 ~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~ 416 (420)
T 3vl1_A 374 EFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYN 416 (420)
T ss_dssp CTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEE
T ss_pred eccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEe
Confidence 223456888999999999999 666666555555554
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-37 Score=280.52 Aligned_cols=282 Identities=18% Similarity=0.323 Sum_probs=227.1
Q ss_pred eecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCc
Q 014125 54 RTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (430)
Q Consensus 54 ~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (430)
....+|...|++++| ++++|++|+.||.|++||+.+++... ....|...|.+++|
T Consensus 127 ~~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~-----------------~~~~h~~~v~~l~~------ 181 (435)
T 1p22_A 127 HCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKR-----------------ILTGHTGSVLCLQY------ 181 (435)
T ss_dssp ECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEE-----------------EECCCSSCEEEEEC------
T ss_pred ecccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEE-----------------EEcCCCCcEEEEEE------
Confidence 344577888999887 78999999999999999998664321 23346689999988
Q ss_pred cCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCcccccc
Q 014125 134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYS 212 (430)
Q Consensus 134 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~ 212 (430)
++.+|++|+.||.|++||+.+++.+..+..+.. .|.+++|++ ..++ ++.|+.|++||+......
T Consensus 182 ---~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~-----~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~----- 246 (435)
T 1p22_A 182 ---DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCE-----AVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDI----- 246 (435)
T ss_dssp ---CSSEEEEEETTSCEEEEESSSCCEEEEECCCCS-----CEEEEECCT--TEEEEEETTSCEEEEECSSSSCC-----
T ss_pred ---CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCC-----cEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCc-----
Confidence 577999999999999999999999888877655 899999974 3555 669999999999874321
Q ss_pred cccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEE
Q 014125 213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILC 292 (430)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i 292 (430)
.......+|...|.+++| ++..+++|+.||.|++||+++++.+..+.+|...|.+++| ++.++++++ .||.|++
T Consensus 247 ~~~~~~~~~~~~v~~~~~---~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~-~dg~i~i 320 (435)
T 1p22_A 247 TLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGS-SDNTIRL 320 (435)
T ss_dssp EEEEEECCCSSCEEEEEE---ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEE-TTSCEEE
T ss_pred eeeeEecCCCCcEEEEEe---CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEe-CCCeEEE
Confidence 111234678889999999 3459999999999999999999999999999999999999 567999999 9999999
Q ss_pred EeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCC---------eecccccccCCeeEEEEc
Q 014125 293 WDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGK---------WISGFQAAADTVNGFSFH 363 (430)
Q Consensus 293 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---------~~~~~~~~~~~v~~~~~~ 363 (430)
||++++.... .+ .+|...|.+++| ++.+|++|+.||.|++||+.+++ .+..+.+|.+.|.+++|
T Consensus 321 wd~~~~~~~~-~~---~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~- 393 (435)
T 1p22_A 321 WDIECGACLR-VL---EGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF- 393 (435)
T ss_dssp EETTTCCEEE-EE---CCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE-
T ss_pred EECCCCCEEE-EE---eCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe-
Confidence 9999875432 22 578899999998 68899999999999999998765 77888899999999999
Q ss_pred CCCcEEEEeeCCceeeecCCCccccccCCCcEEEEeecccccc
Q 014125 364 PFLPMAASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYASMM 406 (430)
Q Consensus 364 ~~~~~l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~~~ 406 (430)
++.+|++++ .||.|++|++..+...
T Consensus 394 -~~~~l~s~s-----------------~Dg~i~iwd~~~~~~~ 418 (435)
T 1p22_A 394 -DEFQIVSSS-----------------HDDTILIWDFLNDPAA 418 (435)
T ss_dssp -CSSCEEECC-----------------SSSEEEEEC-------
T ss_pred -CCCEEEEEe-----------------CCCEEEEEECCCCCCc
Confidence 677777776 5677777777655443
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-36 Score=272.37 Aligned_cols=290 Identities=13% Similarity=0.186 Sum_probs=225.8
Q ss_pred eeecceeecccCCCceeEEEECcC---CceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeee
Q 014125 48 HFYNQFRTSSIPNNFLKGIKWSPD---GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYD 124 (430)
Q Consensus 48 ~~~~~~~~~~~h~~~v~~~~~sp~---~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 124 (430)
.+.+.+..+.+|.+.|++++|+|+ |++|++|+.||.|+|||+.+.. .........|...|.+
T Consensus 27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~---------------~~~~~~~~~h~~~v~~ 91 (368)
T 3mmy_A 27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSG---------------QTIPKAQQMHTGPVLD 91 (368)
T ss_dssp CTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTS---------------CEEEEEEEECSSCEEE
T ss_pred CCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCC---------------ceeEEEeccccCCEEE
Confidence 344566789999999999999999 6999999999999999998621 1112344557789999
Q ss_pred eeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEE--CCCCcEEEE-EcCCeEEEEEc
Q 014125 125 FCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAF--NPTGTKIFA-GYNKSVRVFDV 201 (430)
Q Consensus 125 ~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~-~~d~~i~v~d~ 201 (430)
++| +|++++|++++.||.|++||+.+++..... .+. ..|.+++| +|++.++++ +.|+.|++||+
T Consensus 92 ~~~-------~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~-~~~-----~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~ 158 (368)
T 3mmy_A 92 VCW-------SDDGSKVFTASCDKTAKMWDLSSNQAIQIA-QHD-----APVKTIHWIKAPNYSCVMTGSWDKTLKFWDT 158 (368)
T ss_dssp EEE-------CTTSSEEEEEETTSEEEEEETTTTEEEEEE-ECS-----SCEEEEEEEECSSCEEEEEEETTSEEEEECS
T ss_pred EEE-------CcCCCEEEEEcCCCcEEEEEcCCCCceeec-ccc-----CceEEEEEEeCCCCCEEEEccCCCcEEEEEC
Confidence 999 778999999999999999999998876643 333 38999999 999988884 58999999999
Q ss_pred CCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEe--eccccCeEEEEEccCCCE
Q 014125 202 HRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVL--HGQEGGVTHVQFSRDGNY 279 (430)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~--~~~~~~i~~~~~~~~~~~ 279 (430)
+...... .+ ..+ ..+.++.+.+ ..+++++.++.+.+|+++........ ..+...+.++++.++...
T Consensus 159 ~~~~~~~----~~----~~~-~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (368)
T 3mmy_A 159 RSSNPMM----VL----QLP-ERCYCADVIY---PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQN 226 (368)
T ss_dssp SCSSCSE----EE----ECS-SCEEEEEEET---TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTS
T ss_pred CCCcEEE----EE----ecC-CCceEEEecC---CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCC
Confidence 8743211 11 122 2466777765 37888899999999999876443222 223445666776665554
Q ss_pred ----EEEEecCCCeEEEEeCCCCce--EEEEeecccCCcc------------ceEEEEEcCCCCEEEEEccCCcEEEEEc
Q 014125 280 ----LYTGGRKDPYILCWDLRKAVQ--VVYKLYRSSEHTN------------QRILFDIEPSGRHLGTGGQDGLVHIYDL 341 (430)
Q Consensus 280 ----l~~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~~~~------------~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 341 (430)
+++++ .||.|++||++.... ....+ ..|.. .|.+++|+|++++|++|+.||.|++||+
T Consensus 227 ~~~~~~~~~-~dg~i~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~ 302 (368)
T 3mmy_A 227 KPTGFALGS-IEGRVAIHYINPPNPAKDNFTF---KCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDK 302 (368)
T ss_dssp CEEEEEEEE-TTSEEEEEESSCSCHHHHSEEE---ECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEET
T ss_pred CCCeEEEec-CCCcEEEEecCCCCccccceee---eeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEEC
Confidence 88888 999999999987632 11111 23333 7999999999999999999999999999
Q ss_pred CCCCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeec
Q 014125 342 QTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVD 381 (430)
Q Consensus 342 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw 381 (430)
.+++.+..+.+|..+|.+++|+|++++|++++.|+..+.|
T Consensus 303 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~ 342 (368)
T 3mmy_A 303 DARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGH 342 (368)
T ss_dssp TTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCG
T ss_pred CCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccc
Confidence 9999999999999999999999999999999987644443
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-36 Score=276.11 Aligned_cols=287 Identities=18% Similarity=0.259 Sum_probs=235.5
Q ss_pred ceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecccc
Q 014125 52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (430)
Q Consensus 52 ~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (430)
....+.+|.+.|++++|+ +++|++|+.||+|++||+.+++... ....|...|.+++|
T Consensus 151 ~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~-----------------~~~~h~~~v~~~~~---- 207 (445)
T 2ovr_B 151 CLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIH-----------------TLYGHTSTVRCMHL---- 207 (445)
T ss_dssp EEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEE-----------------EECCCSSCEEEEEE----
T ss_pred EEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEE-----------------EECCCCCcEEEEEe----
Confidence 456788999999999998 5799999999999999998764321 22346678999998
Q ss_pred CccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCcccc
Q 014125 132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEK 210 (430)
Q Consensus 132 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~ 210 (430)
++..+++|+.||.|++||+.+++....+..+.. .|.+++| ++.+++ ++.|+.|++||++...
T Consensus 208 -----~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~-----~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~----- 270 (445)
T 2ovr_B 208 -----HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVA-----AVRCVQY--DGRRVVSGAYDFMVKVWDPETET----- 270 (445)
T ss_dssp -----ETTEEEEEETTSEEEEEESSSCCEEEEEECCSS-----CEEEEEE--CSSCEEEEETTSCEEEEEGGGTE-----
T ss_pred -----cCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcc-----cEEEEEE--CCCEEEEEcCCCEEEEEECCCCc-----
Confidence 356899999999999999999999888877665 8999999 566666 5689999999997631
Q ss_pred cccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeE
Q 014125 211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYI 290 (430)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i 290 (430)
......+|...+.++.| ++..+++++.|+.|++||+++++.+..+.+|...+.++.+ +++++++++ .||.|
T Consensus 271 ---~~~~~~~~~~~v~~~~~---~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~-~dg~i 341 (445)
T 2ovr_B 271 ---CLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGN-ADSTV 341 (445)
T ss_dssp ---EEEEECCCSSCEEEEEE---CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEE-TTSCE
T ss_pred ---EeEEecCCCCceEEEEE---CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEEEe-CCCeE
Confidence 22233578889999999 4568999999999999999999999999999999998887 567899999 99999
Q ss_pred EEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccc-----ccccCCeeEEEEcCC
Q 014125 291 LCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGF-----QAAADTVNGFSFHPF 365 (430)
Q Consensus 291 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-----~~~~~~v~~~~~~~~ 365 (430)
++||++++... ..+.....|...|.+++|+ +++|++|+.||.|++||+.+++.+..+ ..|.+.|.+++|+|+
T Consensus 342 ~vwd~~~~~~~-~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 418 (445)
T 2ovr_B 342 KIWDIKTGQCL-QTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNT 418 (445)
T ss_dssp EEEETTTCCEE-EEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSS
T ss_pred EEEECCCCcEE-EEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCC
Confidence 99999887543 3443334588899999996 579999999999999999999998877 468889999999999
Q ss_pred CcEEEEeeCCceeeecCCCccccccCCCcEEEEeeccc
Q 014125 366 LPMAASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYA 403 (430)
Q Consensus 366 ~~~l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~ 403 (430)
+.++++++.||. .+..|.+||+...
T Consensus 419 ~~~la~~~~dg~-------------~~~~l~v~df~~~ 443 (445)
T 2ovr_B 419 KLVCAVGSRNGT-------------EETKLLVLDFDVD 443 (445)
T ss_dssp EEEEEEECSSSS-------------SCCEEEEEECCCC
T ss_pred EEEEEEcccCCC-------------CccEEEEEECCCC
Confidence 999999987653 1234777776643
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-36 Score=277.46 Aligned_cols=281 Identities=18% Similarity=0.244 Sum_probs=221.6
Q ss_pred ceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecccc
Q 014125 52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (430)
Q Consensus 52 ~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (430)
....+.+|.+.|++++|+|++ +|++|+.||+|++||+.+++.. .....|...|.+++|.+
T Consensus 154 ~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~-----------------~~~~~h~~~v~~l~~~~-- 213 (464)
T 3v7d_B 154 FLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCT-----------------HVFEGHNSTVRCLDIVE-- 213 (464)
T ss_dssp EEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEE-----------------EEECCCSSCEEEEEEEE--
T ss_pred EEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEE-----------------EEECCCCCccEEEEEec--
Confidence 445678999999999999988 9999999999999999876422 12334678999999976
Q ss_pred CccCCCCceEEEEeCCCcEEEEeccCCceeeeeecc------------------cccccccceEEEEECCCCcEEEE-Ec
Q 014125 132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAY------------------DAVDEITAAFSVAFNPTGTKIFA-GY 192 (430)
Q Consensus 132 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~------------------~~~~~~~~v~~~~~~~~~~~l~~-~~ 192 (430)
.+++.+|++++.||.|++||+.++......... ....+...+.++ ++++.++++ +.
T Consensus 214 ---~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~ 288 (464)
T 3v7d_B 214 ---YKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSY 288 (464)
T ss_dssp ---SSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEET
T ss_pred ---CCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeC
Confidence 467899999999999999999887543221100 001122355555 567888885 58
Q ss_pred CCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEE
Q 014125 193 NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQ 272 (430)
Q Consensus 193 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~ 272 (430)
|+.|++||++... ......+|...|.+++|+| ++..+++|+.||.|++||+++++.+..+.+|...|.+++
T Consensus 289 d~~i~vwd~~~~~--------~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~ 359 (464)
T 3v7d_B 289 DNTLIVWDVAQMK--------CLYILSGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLR 359 (464)
T ss_dssp TSCEEEEETTTTE--------EEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred CCeEEEEECCCCc--------EEEEecCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEE
Confidence 9999999997631 2223357888999999999 677999999999999999999999999999999999999
Q ss_pred EccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecc-cc
Q 014125 273 FSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISG-FQ 351 (430)
Q Consensus 273 ~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~ 351 (430)
|+ +.+|++++ .||.|++||+++....... .+...+..++|+|++++|++|+ ||.|++||+.+++.+.. +.
T Consensus 360 ~~--~~~l~s~s-~dg~v~vwd~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~ 430 (464)
T 3v7d_B 360 LS--DKFLVSAA-ADGSIRGWDANDYSRKFSY-----HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANIL 430 (464)
T ss_dssp EC--SSEEEEEE-TTSEEEEEETTTCCEEEEE-----ECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTT
T ss_pred Ec--CCEEEEEe-CCCcEEEEECCCCceeeee-----cCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhc
Confidence 97 57899999 9999999999987544322 2555677789999999999998 89999999999999876 67
Q ss_pred cccCCeeEEEEcCCCcEEEEeeCCc
Q 014125 352 AAADTVNGFSFHPFLPMAASSSGHR 376 (430)
Q Consensus 352 ~~~~~v~~~~~~~~~~~l~s~~~d~ 376 (430)
.|...|.+++|+ ...++++++.|+
T Consensus 431 ~~~~~v~~v~~~-~~~l~~~~~~~g 454 (464)
T 3v7d_B 431 KDADQIWSVNFK-GKTLVAAVEKDG 454 (464)
T ss_dssp TTCSEEEEEEEE-TTEEEEEEEETT
T ss_pred cCCCcEEEEEec-CCEEEEEEEeCC
Confidence 788999999997 344555555443
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=269.74 Aligned_cols=253 Identities=16% Similarity=0.264 Sum_probs=196.9
Q ss_pred ceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecccc
Q 014125 52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (430)
Q Consensus 52 ~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (430)
....+.+|...|++++|+|++.+|++|+.|++|++||+.+++.. .....|...|.+++|
T Consensus 68 ~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~-----------------~~~~~h~~~v~~v~~---- 126 (343)
T 2xzm_R 68 PHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTY-----------------KRFVGHQSEVYSVAF---- 126 (343)
T ss_dssp EEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEE-----------------EEEECCCSCEEEEEE----
T ss_pred ccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEE-----------------EEEcCCCCcEEEEEE----
Confidence 34578899999999999999999999999999999999876432 123457789999999
Q ss_pred CccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCC----------cEEE-EEcCCeEEEEE
Q 014125 132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG----------TKIF-AGYNKSVRVFD 200 (430)
Q Consensus 132 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----------~~l~-~~~d~~i~v~d 200 (430)
+|++++|++++.|+.|++||+.... ..... ....+...|.+++|+|++ .+++ ++.|+.|++||
T Consensus 127 ---sp~~~~l~s~~~d~~i~~wd~~~~~-~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd 200 (343)
T 2xzm_R 127 ---SPDNRQILSAGAEREIKLWNILGEC-KFSSA--EKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN 200 (343)
T ss_dssp ---CSSTTEEEEEETTSCEEEEESSSCE-EEECC--TTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE
T ss_pred ---CCCCCEEEEEcCCCEEEEEeccCCc-eeeee--cccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc
Confidence 7789999999999999999997433 22222 111334489999999987 5677 56999999999
Q ss_pred cCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCc-eeeEEeeccccCeEEEEEccCCCE
Q 014125 201 VHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-ELLYVLHGQEGGVTHVQFSRDGNY 279 (430)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~ 279 (430)
... .......+|...|.+++|+| ++.+|++|+.||.|++||+... .....+. +...|.+++|+|++.+
T Consensus 201 ~~~---------~~~~~~~~h~~~v~~~~~s~-~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~~ 269 (343)
T 2xzm_R 201 TNF---------QIRYTFKAHESNVNHLSISP-NGKYIATGGKDKKLLIWDILNLTYPQREFD-AGSTINQIAFNPKLQW 269 (343)
T ss_dssp TTT---------EEEEEEECCSSCEEEEEECT-TSSEEEEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEEEECSSSCE
T ss_pred CCC---------ceeEEEcCccccceEEEECC-CCCEEEEEcCCCeEEEEECCCCcccceeec-CCCcEEEEEECCCCCE
Confidence 532 11222357888999999999 6779999999999999999543 3444443 5567999999999987
Q ss_pred EEEEecCCCeEEEEeCCCCceEEE-Eee--------cccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCC
Q 014125 280 LYTGGRKDPYILCWDLRKAVQVVY-KLY--------RSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTG 344 (430)
Q Consensus 280 l~~~~~~d~~i~i~d~~~~~~~~~-~~~--------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 344 (430)
++++ .|+.|++||+.+...... .+. ...+|...+.+++|+|+|++|++|+.||.|++|++.++
T Consensus 270 la~~--~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 270 VAVG--TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp EEEE--ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred EEEE--CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 7654 588899999987543211 111 01257788999999999999999999999999998764
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-36 Score=273.56 Aligned_cols=261 Identities=18% Similarity=0.241 Sum_probs=210.2
Q ss_pred eeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccC
Q 014125 53 FRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS 132 (430)
Q Consensus 53 ~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 132 (430)
..++.+|.+.|++++|+|++++||+|+.||.|+||++.... .........|...|.+++|.|
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~---------------~~~~~~~~~h~~~v~~~~~~~--- 65 (379)
T 3jrp_A 4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET---------------HKLIDTLTGHEGPVWRVDWAH--- 65 (379)
T ss_dssp -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE---------------EEEEEEECCCSSCEEEEEECC---
T ss_pred cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc---------------ceeeeEecCCCCcEEEEEeCC---
Confidence 45788999999999999999999999999999999986321 111223345778999999943
Q ss_pred ccCCCCceEEEEeCCCcEEEEeccCCc--eeeeeecccccccccceEEEEECCC--CcEEE-EEcCCeEEEEEcCCCCCc
Q 014125 133 ASDPTSCVFASTTRDHPIHLWDATTGL--LRCTYRAYDAVDEITAAFSVAFNPT--GTKIF-AGYNKSVRVFDVHRPGRD 207 (430)
Q Consensus 133 ~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~-~~~d~~i~v~d~~~~~~~ 207 (430)
..++.+|++++.||.|++||+.+++ ....+..+.. .|.+++|+|+ +.+++ ++.|+.|++||++.....
T Consensus 66 --~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~ 138 (379)
T 3jrp_A 66 --PKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSA-----SVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT 138 (379)
T ss_dssp --GGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSS-----CEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCC
T ss_pred --CCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCc-----ceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCce
Confidence 1238899999999999999999987 4555554443 8999999999 88888 559999999999874321
Q ss_pred ccccccccCCCCCCCcceEEEEEcCC------------CCceEEEecCCCeEEEEEcCCce----eeEEeeccccCeEEE
Q 014125 208 FEKYSTLKGNKEGQAGIMSAIAFSPT------------HTGMLAIGSYSQTSAIYREDNME----LLYVLHGQEGGVTHV 271 (430)
Q Consensus 208 ~~~~~~~~~~~~~~~~~v~~~~~~~~------------~~~~l~~~~~dg~v~~~d~~~~~----~~~~~~~~~~~i~~~ 271 (430)
.. .....|...|.+++|+|. ++.++++++.||.|++||++++. ....+.+|...|.++
T Consensus 139 ~~------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~ 212 (379)
T 3jrp_A 139 SP------IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDV 212 (379)
T ss_dssp CE------EEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEE
T ss_pred ee------EEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEE
Confidence 11 123567788999999995 47799999999999999998754 456777899999999
Q ss_pred EEccC---CCEEEEEecCCCeEEEEeCCCCceE-EEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCC
Q 014125 272 QFSRD---GNYLYTGGRKDPYILCWDLRKAVQV-VYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGK 345 (430)
Q Consensus 272 ~~~~~---~~~l~~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 345 (430)
+|+|+ +.+|++++ .||.|++||++..... .........+...+.+++|+|++++|++++.||.|++|++....
T Consensus 213 ~~sp~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 213 AWSPTVLLRSYLASVS-QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp EECCCCSSSEEEEEEE-TTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred EECCCCCCCCeEEEEe-CCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence 99999 88999999 9999999999886422 22333335588899999999999999999999999999998543
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=276.18 Aligned_cols=273 Identities=16% Similarity=0.239 Sum_probs=215.8
Q ss_pred ceeEEEECcCCceE-EEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCC-CCc
Q 014125 62 FLKGIKWSPDGSSF-LTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP-TSC 139 (430)
Q Consensus 62 ~v~~~~~sp~~~~l-~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~ 139 (430)
....++++|+...+ ++++.||.|+||++...... .........|...|.+++| +| ++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~-------------~~~~~~~~~h~~~V~~~~~-------~p~~~~ 95 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRV-------------DKNVPLVCGHTAPVLDIAW-------CPHNDN 95 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEEC-------------CTTCCCBCCCSSCEEEEEE-------CTTCTT
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCC-------------CCCCceEecCCCCEEEEEe-------CCCCCC
Confidence 35568999976544 45788999999999653211 0111233457789999999 66 789
Q ss_pred eEEEEeCCCcEEEEeccCC-------ceeeeeecccccccccceEEEEECCCC-cEEE-EEcCCeEEEEEcCCCCCcccc
Q 014125 140 VFASTTRDHPIHLWDATTG-------LLRCTYRAYDAVDEITAAFSVAFNPTG-TKIF-AGYNKSVRVFDVHRPGRDFEK 210 (430)
Q Consensus 140 ~l~~~~~dg~i~vwd~~~~-------~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~-~~~d~~i~v~d~~~~~~~~~~ 210 (430)
+|++|+.||.|++||+.++ +.+..+..|.. .|.+++|+|++ .+|+ ++.|+.|++||++...
T Consensus 96 ~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~-----~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~----- 165 (402)
T 2aq5_A 96 VIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTK-----RVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA----- 165 (402)
T ss_dssp EEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSS-----CEEEEEECSSBTTEEEEEETTSCEEEEETTTTE-----
T ss_pred EEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCC-----eEEEEEECcCCCCEEEEEcCCCEEEEEECCCCC-----
Confidence 9999999999999999987 45566665554 89999999998 5777 5589999999998642
Q ss_pred cccccCCC--CCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEe-eccccC-eEEEEEccCCCEEEEE---
Q 014125 211 YSTLKGNK--EGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVL-HGQEGG-VTHVQFSRDGNYLYTG--- 283 (430)
Q Consensus 211 ~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~-~~~~~~-i~~~~~~~~~~~l~~~--- 283 (430)
..... ..|...|.+++|+| ++.+|++++.||.|++||+++++.+..+ ..|.+. +.+++|+|++.+|+++
T Consensus 166 ---~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~ 241 (402)
T 2aq5_A 166 ---AVLTLGPDVHPDTIYSVDWSR-DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSR 241 (402)
T ss_dssp ---EEEEECTTTCCSCEEEEEECT-TSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECT
T ss_pred ---ccEEEecCCCCCceEEEEECC-CCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccC
Confidence 11122 56788999999999 6779999999999999999999998888 678775 8999999999999888
Q ss_pred ecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEE-EEccCCcEEEEEcCCCCe-ecccccc--cCCeeE
Q 014125 284 GRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLG-TGGQDGLVHIYDLQTGKW-ISGFQAA--ADTVNG 359 (430)
Q Consensus 284 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~vwd~~~~~~-~~~~~~~--~~~v~~ 359 (430)
+ .|+.|++||+++......... ..+...+.+++|+|++++|+ +|+.||.|++||+.+++. +..+..| ...|.+
T Consensus 242 ~-~d~~i~iwd~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~ 318 (402)
T 2aq5_A 242 M-SERQVALWDTKHLEEPLSLQE--LDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRG 318 (402)
T ss_dssp T-CCEEEEEEETTBCSSCSEEEE--CCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSE
T ss_pred C-CCceEEEEcCccccCCceEEe--ccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccc
Confidence 6 899999999998654222211 34667899999999999986 566799999999999885 5555544 589999
Q ss_pred EEEcCCCcEEEE
Q 014125 360 FSFHPFLPMAAS 371 (430)
Q Consensus 360 ~~~~~~~~~l~s 371 (430)
++|+|++.++++
T Consensus 319 ~~~sp~~~~~~s 330 (402)
T 2aq5_A 319 MGYMPKRGLEVN 330 (402)
T ss_dssp EEECCGGGSCGG
T ss_pred eEEeccccccee
Confidence 999999887654
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-37 Score=268.53 Aligned_cols=248 Identities=17% Similarity=0.210 Sum_probs=192.5
Q ss_pred eeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCc--eeeeeecccccccccceEEEEECC--CCcEEE
Q 014125 114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGL--LRCTYRAYDAVDEITAAFSVAFNP--TGTKIF 189 (430)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~ 189 (430)
....|...|++++| +|++++|++|+.|++|++||+.++. .+..+..|.. .|.+++|+| ++.+|+
T Consensus 8 ~~~~H~~~V~~v~~-------s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~-----~V~~v~~~~~~~~~~l~ 75 (316)
T 3bg1_A 8 VDTSHEDMIHDAQM-------DYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEG-----PVWQVAWAHPMYGNILA 75 (316)
T ss_dssp ------CCEEEEEE-------CGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSS-----CEEEEEECCGGGSSCEE
T ss_pred ecccccCeEEEeeE-------cCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCc-----cEEEEEeCCCCCCCEEE
Confidence 34567889999999 6789999999999999999998875 3455665554 999999986 377777
Q ss_pred -EEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCC-CceEEEecCCCeEEEEEcCCcee---eEEeecc
Q 014125 190 -AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTH-TGMLAIGSYSQTSAIYREDNMEL---LYVLHGQ 264 (430)
Q Consensus 190 -~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~~~d~~~~~~---~~~~~~~ 264 (430)
++.|++|++||++.+... ......+|...|.+++|+|+. +.+|++|+.|++|++||++.+.. ...+.+|
T Consensus 76 s~s~D~~v~iWd~~~~~~~------~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h 149 (316)
T 3bg1_A 76 SCSYDRKVIIWREENGTWE------KSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAH 149 (316)
T ss_dssp EEETTSCEEEECCSSSCCC------EEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSS
T ss_pred EEECCCEEEEEECCCCcce------EEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccc
Confidence 569999999999763211 111235788899999999953 67999999999999999987532 3456678
Q ss_pred ccCeEEEEEccC-----------------CCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCC---
Q 014125 265 EGGVTHVQFSRD-----------------GNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSG--- 324 (430)
Q Consensus 265 ~~~i~~~~~~~~-----------------~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--- 324 (430)
...|.+++|+|+ +++|++++ .|+.|++||++..... .......+|...|.+++|+|++
T Consensus 150 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs-~D~~v~lWd~~~~~~~-~~~~~l~~h~~~V~~v~~sp~~~~~ 227 (316)
T 3bg1_A 150 TIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGG-CDNLIKLWKEEEDGQW-KEEQKLEAHSDWVRDVAWAPSIGLP 227 (316)
T ss_dssp SSCBCCCEECCCCCC------CCSCCCCCCCBEECCB-TTSBCCEEEECTTSCE-EEEECCBCCSSCEEEEECCCCSSCS
T ss_pred cCCcceEEEccccCCccccccccccCccccceEEEec-CCCeEEEEEeCCCCcc-ceeeecccCCCceEEEEecCCCCCC
Confidence 899999999997 46888888 9999999999754321 1223346899999999999986
Q ss_pred -CEEEEEccCCcEEEEEcCCCC----eecccccccCCeeEEEEcCCCcEEEEeeCCceeeec
Q 014125 325 -RHLGTGGQDGLVHIYDLQTGK----WISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVD 381 (430)
Q Consensus 325 -~~l~~~~~dg~i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw 381 (430)
.+|++|+.||+|++|++.+.. ....+..|...|.+++|+|++++|++++.|+.+++|
T Consensus 228 ~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw 289 (316)
T 3bg1_A 228 TSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLW 289 (316)
T ss_dssp CCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEE
T ss_pred CceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEE
Confidence 889999999999999998631 233456788999999999999999999865444444
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-35 Score=261.23 Aligned_cols=276 Identities=11% Similarity=0.110 Sum_probs=199.7
Q ss_pred eecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCc
Q 014125 54 RTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (430)
Q Consensus 54 ~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (430)
..+.+|.+.|++++|+|||++||+|+.++ ++||++.+.... ... +...+..+++
T Consensus 13 ~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~------------------~~~-~~~~~~~~~~------ 66 (355)
T 3vu4_A 13 VPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHI------------------MSQ-EMRHLSKVRM------ 66 (355)
T ss_dssp ------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEE------------------EEE-ECSCCCEEEE------
T ss_pred cccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCccee------------------eee-ecCCeEEEEE------
Confidence 35678999999999999999999998875 789998743211 111 1123566666
Q ss_pred cCCCCceE-EEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccc
Q 014125 134 SDPTSCVF-ASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYS 212 (430)
Q Consensus 134 ~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~ 212 (430)
.++++.+ ++++.|+.|++||+.+++.+..+.... .|.+++|+++. ++++.++.|++||+.........+
T Consensus 67 -~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~------~v~~v~~~~~~--~~~~~~~~i~i~d~~~~~~~~~~~- 136 (355)
T 3vu4_A 67 -LHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDA------PVKDLFLSREF--IVVSYGDVISVFKFGNPWKRITDD- 136 (355)
T ss_dssp -CTTSSEEEEECSSTTEEEEEETTTTEEEEEEECSS------CEEEEEECSSE--EEEEETTEEEEEESSTTCCBSSCC-
T ss_pred -cCCCCEEEEEECCccEEEEEECCCCcEEEEEECCC------ceEEEEEcCCE--EEEEEcCEEEEEECCCCceeeEEe-
Confidence 3455555 677888999999999999888776432 88999998764 555678999999998742221111
Q ss_pred cccCCCCCCCcceEEEEEcCCCCceEEE--ecCCCeEEEEEcCCce----------------eeEEeeccccCeEEEEEc
Q 014125 213 TLKGNKEGQAGIMSAIAFSPTHTGMLAI--GSYSQTSAIYREDNME----------------LLYVLHGQEGGVTHVQFS 274 (430)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~--~~~dg~v~~~d~~~~~----------------~~~~~~~~~~~i~~~~~~ 274 (430)
.. +...+++++ ..+++ |+.+|.|++||+++++ .+..+.+|.+.|++++|+
T Consensus 137 ------~~---~~~~~~~s~---~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s 204 (355)
T 3vu4_A 137 ------IR---FGGVCEFSN---GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLN 204 (355)
T ss_dssp ------EE---EEEEEEEET---TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEEC
T ss_pred ------cc---CCceEEEEc---cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEEC
Confidence 11 345566766 35555 6899999999999765 267888999999999999
Q ss_pred cCCCEEEEEecCCCe-EEEEeCCCCceEEEEeecccC-CccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeec--cc
Q 014125 275 RDGNYLYTGGRKDPY-ILCWDLRKAVQVVYKLYRSSE-HTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWIS--GF 350 (430)
Q Consensus 275 ~~~~~l~~~~~~d~~-i~i~d~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~--~~ 350 (430)
|+|++|++++ .|++ |++||++++.... .+. .+ |...|.+++|+|+|++|++++.|+.|++||++.+.... .+
T Consensus 205 ~~g~~l~s~s-~d~~~v~iwd~~~~~~~~-~~~--~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~ 280 (355)
T 3vu4_A 205 RKSDMVATCS-QDGTIIRVFKTEDGVLVR-EFR--RGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHAL 280 (355)
T ss_dssp TTSSEEEEEE-TTCSEEEEEETTTCCEEE-EEE--CTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEET
T ss_pred CCCCEEEEEe-CCCCEEEEEECCCCcEEE-EEE--cCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccc
Confidence 9999999999 9998 9999999875443 221 13 88999999999999999999999999999998653211 11
Q ss_pred c---------------------cccCCeeEEEEcCCCcEEEEeeCCceeeec
Q 014125 351 Q---------------------AAADTVNGFSFHPFLPMAASSSGHRRFPVD 381 (430)
Q Consensus 351 ~---------------------~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw 381 (430)
. .+......++|+|++++|++++.||.+++|
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~ 332 (355)
T 3vu4_A 281 KGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETF 332 (355)
T ss_dssp TTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEE
T ss_pred cceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEE
Confidence 1 111234678999999999988865555544
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-35 Score=292.06 Aligned_cols=249 Identities=17% Similarity=0.270 Sum_probs=203.6
Q ss_pred eeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccC
Q 014125 53 FRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS 132 (430)
Q Consensus 53 ~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 132 (430)
...+.+|.+.|++++|+|++++|++|+.||.|++||+.+++... ....|...|.+++|
T Consensus 48 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~-----------------~~~~~~~~v~~~~~----- 105 (814)
T 3mkq_A 48 VRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVV-----------------DFEAHPDYIRSIAV----- 105 (814)
T ss_dssp EEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEE-----------------EEECCSSCEEEEEE-----
T ss_pred EEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE-----------------EEecCCCCEEEEEE-----
Confidence 45677999999999999999999999999999999998764321 22346689999999
Q ss_pred ccCCCCceEEEEeCCCcEEEEeccCC-ceeeeeecccccccccceEEEEECC-CCcEEE-EEcCCeEEEEEcCCCCCccc
Q 014125 133 ASDPTSCVFASTTRDHPIHLWDATTG-LLRCTYRAYDAVDEITAAFSVAFNP-TGTKIF-AGYNKSVRVFDVHRPGRDFE 209 (430)
Q Consensus 133 ~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~-~~~d~~i~v~d~~~~~~~~~ 209 (430)
+|++.+|++++.||.|++||+.++ .....+..+.. .|.+++|+| ++..++ ++.|+.|++||+........
T Consensus 106 --s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~-----~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~ 178 (814)
T 3mkq_A 106 --HPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEH-----FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFT 178 (814)
T ss_dssp --CSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSS-----CEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEE
T ss_pred --eCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCC-----cEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeE
Confidence 778999999999999999999987 55566665554 899999999 777777 45899999999976432211
Q ss_pred ccccccCCCCCCCcceEEEEEcCC-CCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCC
Q 014125 210 KYSTLKGNKEGQAGIMSAIAFSPT-HTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDP 288 (430)
Q Consensus 210 ~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~ 288 (430)
. ...+...+.+++|+|. ++.++++++.||.|++||+++++.+..+.+|...|.+++|+|++++|++++ .||
T Consensus 179 ~-------~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg 250 (814)
T 3mkq_A 179 L-------TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGS-EDG 250 (814)
T ss_dssp E-------ECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEE-TTS
T ss_pred E-------ecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCC
Confidence 1 1234467999999983 456899999999999999999999999999999999999999999999999 999
Q ss_pred eEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCC--EEEEEccCCcEEEEEcCC
Q 014125 289 YILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGR--HLGTGGQDGLVHIYDLQT 343 (430)
Q Consensus 289 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~vwd~~~ 343 (430)
.|++||+.+..... .. ..+...+.+++|+|++. +++++ .++.+.+|++..
T Consensus 251 ~v~vwd~~~~~~~~-~~---~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 302 (814)
T 3mkq_A 251 TLKIWNSSTYKVEK-TL---NVGLERSWCIATHPTGRKNYIASG-FDNGFTVLSLGN 302 (814)
T ss_dssp CEEEEETTTCSEEE-EE---CCSSSSEEEEEECTTCGGGEEEEE-ETTEEEEEECSC
T ss_pred eEEEEECCCCcEEE-Ee---ecCCCcEEEEEEccCCCceEEEEE-eCCCEEEEEcCC
Confidence 99999999875432 22 45778999999999987 35544 566788888754
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-36 Score=280.40 Aligned_cols=261 Identities=9% Similarity=0.087 Sum_probs=191.8
Q ss_pred eecCCCeeeeeeeccccCc---------------------cCCCCceEEEEeCCCcEEEEeccCCceee----eeecccc
Q 014125 115 VVTEGESVYDFCWFPHMSA---------------------SDPTSCVFASTTRDHPIHLWDATTGLLRC----TYRAYDA 169 (430)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~~---------------------~~~~~~~l~~~~~dg~i~vwd~~~~~~~~----~~~~~~~ 169 (430)
.+..+..|++++|+|.... .+|++..|++++.|++|+||++.+++... .+..+.
T Consensus 129 ~~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~- 207 (524)
T 2j04_B 129 IYNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSF- 207 (524)
T ss_dssp EEECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECC-
T ss_pred EEECCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecC-
Confidence 3445688999999885310 13445566667789999999998876432 223322
Q ss_pred cccccceEEEEECCC------CcEEE-EEcCCeEEEEEcCCCCCccc---ccccccCCCCCCCcceEEEEEcCCCCceEE
Q 014125 170 VDEITAAFSVAFNPT------GTKIF-AGYNKSVRVFDVHRPGRDFE---KYSTLKGNKEGQAGIMSAIAFSPTHTGMLA 239 (430)
Q Consensus 170 ~~~~~~v~~~~~~~~------~~~l~-~~~d~~i~v~d~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 239 (430)
..|.+++|+|+ +.+|+ ++.|++|++||+........ ........+.+|...|++++|+| + ..|+
T Consensus 208 ----~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~-~-~~la 281 (524)
T 2j04_B 208 ----GEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLS-P-TTVV 281 (524)
T ss_dssp ----CSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESS-S-SEEE
T ss_pred ----CcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecC-C-CeEE
Confidence 37999999997 46788 55899999999976432100 00111123467889999999998 4 3899
Q ss_pred EecCCCeEEEEEcCCc-eeeEEeeccccCeEEE--EEccCC-CEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccce
Q 014125 240 IGSYSQTSAIYREDNM-ELLYVLHGQEGGVTHV--QFSRDG-NYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQR 315 (430)
Q Consensus 240 ~~~~dg~v~~~d~~~~-~~~~~~~~~~~~i~~~--~~~~~~-~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v 315 (430)
+|+.||+|++||++++ .+...+.+|...|+++ +|+|++ .+|++++ .|++|++||+++......... ......+
T Consensus 282 sgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S-~D~tvklWD~~~~~~~~~~~~--~~~~~~v 358 (524)
T 2j04_B 282 CGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVA-VDGYFYIFNPKDIATTKTTVS--RFRGSNL 358 (524)
T ss_dssp EEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEE-TTSEEEEECGGGHHHHCEEEE--ECSCCSC
T ss_pred EEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEec-cCCeEEEEECCCCCccccccc--ccccCcc
Confidence 9999999999999976 4456688999999999 578888 8899999 999999999987643321111 1111347
Q ss_pred EEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCCCc
Q 014125 316 ILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFED 385 (430)
Q Consensus 316 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~ 385 (430)
.+++|+|+++.+++++.|+.|++||++++..+..+.+|.+.|++++|+|++++|++|+.|+.+++|+...
T Consensus 359 ~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 359 VPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAAR 428 (524)
T ss_dssp CCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCS
T ss_pred cceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechH
Confidence 8899999999999999999999999999998888999999999999999999999999999999997543
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-36 Score=271.26 Aligned_cols=273 Identities=13% Similarity=0.146 Sum_probs=219.7
Q ss_pred eeecCCCeeeeeeeccccCccCC-CCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCC----CcEE
Q 014125 114 LVVTEGESVYDFCWFPHMSASDP-TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT----GTKI 188 (430)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l 188 (430)
+...|..+|.+++|+|. ++ ....+++++.++.|++||+.+++.+..+..+....+...|.+++|+|+ +.+|
T Consensus 13 ~~~~h~~~v~~i~~~p~----~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l 88 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWH----SKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLL 88 (366)
T ss_dssp EECTTCSCEEEEEECTT----CCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEE
T ss_pred eecCCCCceEEEEEecc----cCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEE
Confidence 34468899999999663 12 244566677777999999998888877776654445568999999999 5677
Q ss_pred E-EEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEe---ecc
Q 014125 189 F-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVL---HGQ 264 (430)
Q Consensus 189 ~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~---~~~ 264 (430)
+ ++.|+.|++||+.... ......+|...|.+++|+|+++.+|++++.||.|++||+++++....+ ..|
T Consensus 89 ~~~~~dg~i~v~d~~~~~--------~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 160 (366)
T 3k26_A 89 AVAGSRGIIRIINPITMQ--------CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGH 160 (366)
T ss_dssp EEEETTCEEEEECTTTCC--------EEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSC
T ss_pred EEecCCCEEEEEEchhce--------EeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccc
Confidence 7 4599999999997632 122235788899999999967789999999999999999999988887 679
Q ss_pred ccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEE------------------------EeecccCCccceEEEEE
Q 014125 265 EGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVY------------------------KLYRSSEHTNQRILFDI 320 (430)
Q Consensus 265 ~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~------------------------~~~~~~~~~~~v~~~~~ 320 (430)
...|.+++|+|++++|++++ .||.|++||+++...... .......|...|.+++|
T Consensus 161 ~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 239 (366)
T 3k26_A 161 RDEVLSADYDLLGEKIMSCG-MDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRW 239 (366)
T ss_dssp SSCEEEEEECTTSSEEEEEE-TTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEE
T ss_pred cCceeEEEECCCCCEEEEec-CCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEE
Confidence 99999999999999999999 999999999986532100 00111238889999999
Q ss_pred cCCCCEEEEEccCCcEEEEEcCCCCe--------------ecccccccCCeeEEEEcCC--CcEEEEeeCCceeeecCCC
Q 014125 321 EPSGRHLGTGGQDGLVHIYDLQTGKW--------------ISGFQAAADTVNGFSFHPF--LPMAASSSGHRRFPVDDFE 384 (430)
Q Consensus 321 ~~~~~~l~~~~~dg~i~vwd~~~~~~--------------~~~~~~~~~~v~~~~~~~~--~~~l~s~~~d~~~~vw~~~ 384 (430)
+ +++|++++.||.|++||+.+++. +..+..|...|.+++|+|+ +++|++++.||.|++|+..
T Consensus 240 ~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~ 317 (366)
T 3k26_A 240 L--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLE 317 (366)
T ss_dssp E--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECC
T ss_pred c--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECC
Confidence 8 77999999999999999988754 6677789999999999999 9999999999999999543
Q ss_pred c-------------------------------cccccCCCcEEEEeec
Q 014125 385 D-------------------------------LHLSGDENCVSVWSFL 401 (430)
Q Consensus 385 ~-------------------------------l~~~~~d~~i~~w~~~ 401 (430)
. |++++.||.|++|++.
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 318 VEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp SSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 2 6677778888888764
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-35 Score=269.66 Aligned_cols=248 Identities=17% Similarity=0.319 Sum_probs=201.4
Q ss_pred ceeeecCCCeeeeeeeccccCccCCC-CceEEEEeCCCcEEEEeccC----------CceeeeeecccccccccceEEEE
Q 014125 112 ASLVVTEGESVYDFCWFPHMSASDPT-SCVFASTTRDHPIHLWDATT----------GLLRCTYRAYDAVDEITAAFSVA 180 (430)
Q Consensus 112 ~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~vwd~~~----------~~~~~~~~~~~~~~~~~~v~~~~ 180 (430)
......|...|.+++|+ |+ +.+|++++.||.|++|++.+ ......+..|.. .|.+++
T Consensus 121 ~~~~~~h~~~v~~l~~~-------p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~-----~v~~l~ 188 (430)
T 2xyi_A 121 IEIKINHEGEVNRARYM-------PQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQK-----EGYGLS 188 (430)
T ss_dssp EEEEEEESSCCSEEEEE-------TTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSS-----CCCCEE
T ss_pred EEEEEcCCCcEEEEEEC-------CCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCC-----CeEEEE
Confidence 34567788899999994 44 67999999999999999987 455566665554 899999
Q ss_pred ECCCCc-EEEEE-cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCc---
Q 014125 181 FNPTGT-KIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM--- 255 (430)
Q Consensus 181 ~~~~~~-~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~--- 255 (430)
|+|++. +|+++ .||.|++|++......... ........+|...|.+++|+|+++.+|++++.||.|++||++++
T Consensus 189 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~ 267 (430)
T 2xyi_A 189 WNPNLNGYLLSASDDHTICLWDINATPKEHRV-IDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTS 267 (430)
T ss_dssp ECTTSTTEEEEECTTSCEEEEETTSCCBGGGE-EECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSS
T ss_pred eCCCCCCeEEEEeCCCeEEEEeCCCCCCCCce-eccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCC
Confidence 999998 77755 8999999999874322111 11122345788899999999988889999999999999999987
Q ss_pred eeeEEeeccccCeEEEEEccCCC-EEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCC-EEEEEccC
Q 014125 256 ELLYVLHGQEGGVTHVQFSRDGN-YLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGR-HLGTGGQD 333 (430)
Q Consensus 256 ~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d 333 (430)
+....+..|...|++++|+|++. ++++++ .||.|++||++........+ ..|...|.+++|+|+++ +|++++.|
T Consensus 268 ~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~-~dg~v~vwd~~~~~~~~~~~---~~h~~~v~~i~~sp~~~~~l~s~~~d 343 (430)
T 2xyi_A 268 KPSHTVDAHTAEVNCLSFNPYSEFILATGS-ADKTVALWDLRNLKLKLHSF---ESHKDEIFQVQWSPHNETILASSGTD 343 (430)
T ss_dssp SCSEEEECCSSCEEEEEECSSCTTEEEEEE-TTSEEEEEETTCTTSCSEEE---ECCSSCEEEEEECSSCTTEEEEEETT
T ss_pred cceeEeecCCCCeEEEEeCCCCCCEEEEEe-CCCeEEEEeCCCCCCCeEEe---ecCCCCEEEEEECCCCCCEEEEEeCC
Confidence 56777888999999999999998 577777 99999999999854433333 46888999999999985 69999999
Q ss_pred CcEEEEEcCC--------------CCeecccccccCCeeEEEEcCCCc-EEEEeeCCc
Q 014125 334 GLVHIYDLQT--------------GKWISGFQAAADTVNGFSFHPFLP-MAASSSGHR 376 (430)
Q Consensus 334 g~i~vwd~~~--------------~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~ 376 (430)
|.|+|||+.. .+.+..+.+|...|.+++|+|+++ +|++++.|+
T Consensus 344 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg 401 (430)
T 2xyi_A 344 RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDN 401 (430)
T ss_dssp SCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTS
T ss_pred CcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCC
Confidence 9999999987 356777788999999999999999 888887533
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-35 Score=285.68 Aligned_cols=242 Identities=18% Similarity=0.273 Sum_probs=197.9
Q ss_pred eecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCc-----eeeeeecccccccccceEEEEECCCCcEEE
Q 014125 115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGL-----LRCTYRAYDAVDEITAAFSVAFNPTGTKIF 189 (430)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 189 (430)
...|...|++++|.|. ++.+|++|+.|++|++|++.+.. ....+..|.. .|.+++|+|++++|+
T Consensus 378 l~~H~~~V~~v~~~~~------~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~-----~v~~v~~s~~g~~l~ 446 (694)
T 3dm0_A 378 MRAHTDMVTAIATPID------NADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSH-----FVEDVVLSSDGQFAL 446 (694)
T ss_dssp EECCSSCEEEEECCTT------CCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSS-----CEEEEEECTTSSEEE
T ss_pred cccCCceeEEEEecCC------CCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCC-----cEEEEEECCCCCEEE
Confidence 4578899999999442 35789999999999999997643 2344555544 899999999999999
Q ss_pred E-EcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEe---eccc
Q 014125 190 A-GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVL---HGQE 265 (430)
Q Consensus 190 ~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~---~~~~ 265 (430)
+ +.|+.|++||+.... ....+.+|...|.+++|+| ++..|++|+.|++|++||.......... .+|.
T Consensus 447 sgs~Dg~v~vwd~~~~~--------~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~ 517 (694)
T 3dm0_A 447 SGSWDGELRLWDLAAGV--------STRRFVGHTKDVLSVAFSL-DNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHR 517 (694)
T ss_dssp EEETTSEEEEEETTTTE--------EEEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCS
T ss_pred EEeCCCcEEEEECCCCc--------ceeEEeCCCCCEEEEEEeC-CCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCC
Confidence 5 589999999997631 2223467889999999999 6779999999999999998765443332 3688
Q ss_pred cCeEEEEEccCC--CEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCC
Q 014125 266 GGVTHVQFSRDG--NYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQT 343 (430)
Q Consensus 266 ~~i~~~~~~~~~--~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 343 (430)
..|.+++|+|++ ..|++++ .|+.|++||+++..... .+ .+|...|++++|+|++++|++|+.||.|++||+.+
T Consensus 518 ~~v~~~~~~~~~~~~~l~s~s-~d~~v~vwd~~~~~~~~-~~---~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~ 592 (694)
T 3dm0_A 518 DWVSCVRFSPNTLQPTIVSAS-WDKTVKVWNLSNCKLRS-TL---AGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAE 592 (694)
T ss_dssp SCEEEEEECSCSSSCEEEEEE-TTSCEEEEETTTCCEEE-EE---CCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTT
T ss_pred CcEEEEEEeCCCCcceEEEEe-CCCeEEEEECCCCcEEE-EE---cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Confidence 899999999987 5788888 99999999999875332 22 57899999999999999999999999999999999
Q ss_pred CCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCC
Q 014125 344 GKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 344 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~ 383 (430)
++.+..+.. ...|.+++|+|++.+|++++ ++.+++||.
T Consensus 593 ~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~ 630 (694)
T 3dm0_A 593 GKKLYSLEA-NSVIHALCFSPNRYWLCAAT-EHGIKIWDL 630 (694)
T ss_dssp TEEEECCBC-SSCEEEEEECSSSSEEEEEE-TTEEEEEET
T ss_pred CceEEEecC-CCcEEEEEEcCCCcEEEEEc-CCCEEEEEC
Confidence 998888774 46899999999999888776 455888853
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=268.16 Aligned_cols=266 Identities=15% Similarity=0.213 Sum_probs=208.8
Q ss_pred eeecCCCeeeeeeeccccCccCCCC-ceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECC-CCcEEE-E
Q 014125 114 LVVTEGESVYDFCWFPHMSASDPTS-CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNP-TGTKIF-A 190 (430)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~-~ 190 (430)
....|...|.+++| +|++ ++|++|+.||.|++||+.+++....+... .+...|.+++|+| ++.+|+ +
T Consensus 68 ~~~~h~~~v~~~~~-------~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~~l~s~ 137 (383)
T 3ei3_B 68 TASPFDRRVTSLEW-------HPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGM---GPGDAITGMKFNQFNTNQLFVS 137 (383)
T ss_dssp EECCCSSCEEEEEE-------CSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCC---STTCBEEEEEEETTEEEEEEEE
T ss_pred eccCCCCCEEEEEE-------CCCCCCEEEEEcCCCeEEEEeCCCcccceeeecC---CcCCceeEEEeCCCCCCEEEEE
Confidence 34467789999999 6677 89999999999999999998877766531 1233899999999 667777 4
Q ss_pred EcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEE
Q 014125 191 GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTH 270 (430)
Q Consensus 191 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~ 270 (430)
+.|+.|++||++.. .. ..+. ....+...|.+++|+| ++.+|++|+.|+.|++||+ +++.+..+..|...|.+
T Consensus 138 ~~d~~i~iwd~~~~--~~---~~~~-~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~ 209 (383)
T 3ei3_B 138 SIRGATTLRDFSGS--VI---QVFA-KTDSWDYWYCCVDVSV-SRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTH 209 (383)
T ss_dssp ETTTEEEEEETTSC--EE---EEEE-CCCCSSCCEEEEEEET-TTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEE
T ss_pred eCCCEEEEEECCCC--ce---EEEe-ccCCCCCCeEEEEECC-CCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEE
Confidence 58999999999741 11 1111 1234567899999999 6779999999999999999 57788888899999999
Q ss_pred EEEccCCC-EEEEEecCCCeEEEEeCCCCc---eEEEEeecccCCccceEEEEEcC-CCCEEEEEccCCcEEEEEcCCCC
Q 014125 271 VQFSRDGN-YLYTGGRKDPYILCWDLRKAV---QVVYKLYRSSEHTNQRILFDIEP-SGRHLGTGGQDGLVHIYDLQTGK 345 (430)
Q Consensus 271 ~~~~~~~~-~l~~~~~~d~~i~i~d~~~~~---~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~ 345 (430)
++|+|+++ +|++++ .|+.|++||+++.. ...... .|...|.+++|+| ++.+|++++.|+.|++||+++++
T Consensus 210 ~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~----~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~ 284 (383)
T 3ei3_B 210 AEFNPRCDWLMATSS-VDATVKLWDLRNIKDKNSYIAEM----PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWS 284 (383)
T ss_dssp EEECSSCTTEEEEEE-TTSEEEEEEGGGCCSTTCEEEEE----ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTT
T ss_pred EEECCCCCCEEEEEe-CCCEEEEEeCCCCCcccceEEEe----cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCc
Confidence 99999999 888888 99999999998732 222222 5788999999999 99999999999999999999998
Q ss_pred eeccccccc-------CCeeEEEEcCCCcEEEEee-CCceeeecCCCccccccCCCcEEEEeecccccccccCCC
Q 014125 346 WISGFQAAA-------DTVNGFSFHPFLPMAASSS-GHRRFPVDDFEDLHLSGDENCVSVWSFLYASMMENADGI 412 (430)
Q Consensus 346 ~~~~~~~~~-------~~v~~~~~~~~~~~l~s~~-~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~ 412 (430)
.+..+.+|. ..+. +.|+|++..++.+. .|+ .+ +++.|+.|++|++..++.+..+.++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~s~dg--------~~-s~s~d~~i~iwd~~~~~~~~~l~~~ 349 (383)
T 3ei3_B 285 KPDQIIIHPHRQFQHLTPIK-ATWHPMYDLIVAGRYPDD--------QL-LLNDKRTIDIYDANSGGLVHQLRDP 349 (383)
T ss_dssp SCSEEEECCBCCCTTSCCCC-CEECSSSSEEEEECBCCT--------TT-CTTCCCCEEEEETTTCCEEEEECBT
T ss_pred cccccccccccccccccceE-EeccCCCCceEEEecCCc--------cc-ccCCCCeEEEEecCCCceeeeecCC
Confidence 877776553 3444 57888877766543 222 22 6677888888888777777666653
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-34 Score=263.93 Aligned_cols=268 Identities=15% Similarity=0.269 Sum_probs=207.3
Q ss_pred ecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCcc
Q 014125 55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS 134 (430)
Q Consensus 55 ~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 134 (430)
.+.+|.+.|++|+|+|+|++||+|+.||+|+|||+.+++... ....|...+.+++|
T Consensus 142 ~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~-----------------~~~~h~~~v~~~s~------- 197 (420)
T 4gga_A 142 QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR-----------------NMTSHSARVGSLSW------- 197 (420)
T ss_dssp ECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE-----------------EECCCSSCEEEEEE-------
T ss_pred EecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEE-----------------EEeCCCCceEEEee-------
Confidence 345788899999999999999999999999999998764322 23345678888887
Q ss_pred CCCCceEEEEeCCCcEEEEeccCCc-eeeeeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCCcccccc
Q 014125 135 DPTSCVFASTTRDHPIHLWDATTGL-LRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFEKYS 212 (430)
Q Consensus 135 ~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~~~~~ 212 (430)
++..|++|+.|+.+++||..... .+..+..+.. .+..+.|+|++.++++ +.|+.+++|+.........
T Consensus 198 --~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~-----~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~--- 267 (420)
T 4gga_A 198 --NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQ-----EVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV--- 267 (420)
T ss_dssp --ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSS-----CEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSC---
T ss_pred --CCCEEEEEeCCCceeEeeecccceeeEEeccccc-----ceeeeeecCCCCeeeeeeccccceEEeeccccccce---
Confidence 46699999999999999987643 4455555554 8899999999999995 5899999999987533221
Q ss_pred cccCCCCCCCcceEEEEEcCCCCceEEE--ecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEe-cCCCe
Q 014125 213 TLKGNKEGQAGIMSAIAFSPTHTGMLAI--GSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGG-RKDPY 289 (430)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~--~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~d~~ 289 (430)
.......|...|.+++|+|.+..++++ |+.|++|++||+.+++....+..| ..+.++.|+|+++.+++++ ..|+.
T Consensus 268 -~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~ 345 (420)
T 4gga_A 268 -PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQ 345 (420)
T ss_dssp -CSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCC
T ss_pred -eeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEecCCCE
Confidence 112235677889999999988888876 457999999999999998888754 6789999999999888764 36899
Q ss_pred EEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEE
Q 014125 290 ILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSF 362 (430)
Q Consensus 290 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 362 (430)
|++||+.+..... .+ .+|...|++++|+|+|++|++|+.|++|+|||+.+..+......+...+....+
T Consensus 346 I~iwd~~~~~~v~-~l---~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~~~~s~ 414 (420)
T 4gga_A 346 LVIWKYPTMAKVA-EL---KGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRREREKASAAKSSL 414 (420)
T ss_dssp EEEEETTTCCEEE-EE---CCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC---------------
T ss_pred EEEEECCCCcEEE-EE---cCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhhhccCCcccccc
Confidence 9999999875442 33 689999999999999999999999999999999887776666655554443333
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-35 Score=266.76 Aligned_cols=252 Identities=17% Similarity=0.271 Sum_probs=203.9
Q ss_pred cCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCC
Q 014125 58 IPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT 137 (430)
Q Consensus 58 ~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 137 (430)
.|...|++++|+|++++|++|+.||.|++||+.+++... ....|...|.+++| +
T Consensus 132 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~-----------------~~~~~~~~v~~~~~---------~ 185 (401)
T 4aez_A 132 DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLR-----------------TMAGHQARVGCLSW---------N 185 (401)
T ss_dssp CTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE-----------------EECCCSSCEEEEEE---------E
T ss_pred CCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEE-----------------EecCCCCceEEEEE---------C
Confidence 389999999999999999999999999999998764322 22356689999999 3
Q ss_pred CceEEEEeCCCcEEEEecc-CCceeeeeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCCccccccccc
Q 014125 138 SCVFASTTRDHPIHLWDAT-TGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFEKYSTLK 215 (430)
Q Consensus 138 ~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~ 215 (430)
+..|++++.||.|++||+. .+.....+..+.. .|.+++|+|++.+|++ +.|+.|++||++... ..
T Consensus 186 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~--------~~ 252 (401)
T 4aez_A 186 RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSS-----EVCGLAWRSDGLQLASGGNDNVVQIWDARSSI--------PK 252 (401)
T ss_dssp TTEEEEEETTSEEEEEETTSSSCEEEEEECCSS-----CEEEEEECTTSSEEEEEETTSCEEEEETTCSS--------EE
T ss_pred CCEEEEEcCCCCEEEEecccCcceeeEEcCCCC-----CeeEEEEcCCCCEEEEEeCCCeEEEccCCCCC--------cc
Confidence 4699999999999999998 4556666666554 8999999999999995 589999999998632 11
Q ss_pred CCCCCCCcceEEEEEcCCCCceEEEec--CCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEe-cCCCeEEE
Q 014125 216 GNKEGQAGIMSAIAFSPTHTGMLAIGS--YSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGG-RKDPYILC 292 (430)
Q Consensus 216 ~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~d~~i~i 292 (430)
.....|...|.+++|+|++..++++++ .|+.|++||+++++.+..+. +...|.+++|+|+++++++++ ..||.|++
T Consensus 253 ~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v 331 (401)
T 4aez_A 253 FTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSI 331 (401)
T ss_dssp EEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEE
T ss_pred EEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEE
Confidence 223567888999999998888888876 89999999999999888886 667899999999999999853 27999999
Q ss_pred EeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccc
Q 014125 293 WDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQ 351 (430)
Q Consensus 293 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 351 (430)
||+.+..... .....+|...|.+++|+|+|++|++++.||.|++|++.+++.+....
T Consensus 332 ~~~~~~~~~~--~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~~ 388 (401)
T 4aez_A 332 WSYSSSGLTK--QVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRPI 388 (401)
T ss_dssp EEEETTEEEE--EEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC--------
T ss_pred EecCCcccee--EEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccccccc
Confidence 9998864332 22235788999999999999999999999999999999988776543
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-37 Score=275.76 Aligned_cols=287 Identities=12% Similarity=0.113 Sum_probs=214.2
Q ss_pred CCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCC
Q 014125 59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS 138 (430)
Q Consensus 59 h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 138 (430)
-...|.+++|||||+++||++.|++|+ |...++. + ..|...|++++| +|+|
T Consensus 14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~-------------------l-~gh~~~v~~V~F-------sPdg 64 (588)
T 2j04_A 14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKD-------------------I-NCNSKNLFHVKE-------FPLE 64 (588)
T ss_dssp CSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSC-------------------C-SSBGGGTEEEEE-------ECCC
T ss_pred hhccEEEEEECCCCCEEEEEcCCceee--cccccce-------------------e-cCCCccEEEEEE-------CCCC
Confidence 357899999999999999999999999 6433321 1 246689999999 5566
Q ss_pred ceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCcccccccccCC
Q 014125 139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGN 217 (430)
Q Consensus 139 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~ 217 (430)
.++.+.+|+.... ..+... +...|.+++|+|+|..|+ ++.||.|++||... ....+...
T Consensus 65 -------~~~~~~~~~~~~~---~~~~~~----~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~------~l~~l~~~ 124 (588)
T 2j04_A 65 -------FENKLDFELAQQN---GLLNSQ----PVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK------MLTNLDSK 124 (588)
T ss_dssp -------CCCTTTTSCCCSS---CSSTTS----CSCCEEEEEECSSSSCEEEEETTSCEEEEETTE------EEEECCCS
T ss_pred -------CcceEEEEeCCCc---eEeecC----CCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc------eeeeccCC
Confidence 4555555554322 222211 123899999999999999 55999999999532 11111100
Q ss_pred CCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCcee-------eEEe----eccccCeEEEEEccCCCEEEEEecC
Q 014125 218 KEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL-------LYVL----HGQEGGVTHVQFSRDGNYLYTGGRK 286 (430)
Q Consensus 218 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~-------~~~~----~~~~~~i~~~~~~~~~~~l~~~~~~ 286 (430)
..-....+.+++|+| ++++|++|+.||+|++||+.++.. +..+ .+|...|.+++|+|+| +++++ .
T Consensus 125 ~~~~~~sv~svafSP-DG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass-~ 200 (588)
T 2j04_A 125 GNLSSRTYHCFEWNP-IESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAAL-S 200 (588)
T ss_dssp SCSTTTCEEEEEECS-SSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEE-T
T ss_pred CccccccEEEEEEcC-CCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEe-C
Confidence 000123599999999 778999999999999999998752 5665 5677899999999999 77787 8
Q ss_pred CCeEEEEeCCCCceE--EEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEE--
Q 014125 287 DPYILCWDLRKAVQV--VYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSF-- 362 (430)
Q Consensus 287 d~~i~i~d~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~-- 362 (430)
|+.|++||+.+.... ...+. .+|...|.+++|+ |.+||+++ ++.|++||+.+++......+|.+.|..++|
T Consensus 201 D~tVrlWd~~~~~~~~~~~tL~--~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~ 275 (588)
T 2j04_A 201 NNSVFSMTVSASSHQPVSRMIQ--NASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNH 275 (588)
T ss_dssp TCCEEEECCCSSSSCCCEEEEE--CCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETT
T ss_pred CCeEEEEECCCCccccceeeec--ccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeee
Confidence 999999999887531 11121 3577889999999 68999987 699999999988774444379999999999
Q ss_pred cCCCcEEEEeeCCceeeecCCCc-------cccccCCCcEEEEeecccc
Q 014125 363 HPFLPMAASSSGHRRFPVDDFED-------LHLSGDENCVSVWSFLYAS 404 (430)
Q Consensus 363 ~~~~~~l~s~~~d~~~~vw~~~~-------l~~~~~d~~i~~w~~~~~~ 404 (430)
+|++..|++++.||. ++|..+. ..+++.|+.+++|+...+.
T Consensus 276 s~d~~~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~ 323 (588)
T 2j04_A 276 EKESTILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNE 323 (588)
T ss_dssp CSSCEEEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTS
T ss_pred CCCCCEEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCc
Confidence 999999999999999 9995432 2333348999999876554
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-35 Score=263.31 Aligned_cols=252 Identities=14% Similarity=0.168 Sum_probs=206.9
Q ss_pred eeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEecc--CCceeeeeecccccccccceEEEEECCC--CcEEE
Q 014125 114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDAT--TGLLRCTYRAYDAVDEITAAFSVAFNPT--GTKIF 189 (430)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~ 189 (430)
....|...|.+++| +|++++|++++.||.|++||+. +++....+..|.. .|.+++|+++ +.+|+
T Consensus 6 ~~~~h~~~v~~~~~-------s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~~~l~ 73 (379)
T 3jrp_A 6 IANAHNELIHDAVL-------DYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEG-----PVWRVDWAHPKFGTILA 73 (379)
T ss_dssp CEEECCCCEEEEEE-------CSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSS-----CEEEEEECCGGGCSEEE
T ss_pred EecCCcccEEEEEE-------cCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCC-----cEEEEEeCCCCCCCEEE
Confidence 34567789999999 7789999999999999999998 4455566665554 8999999977 88888
Q ss_pred -EEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCC-CceEEEecCCCeEEEEEcCCce--eeEEeeccc
Q 014125 190 -AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTH-TGMLAIGSYSQTSAIYREDNME--LLYVLHGQE 265 (430)
Q Consensus 190 -~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~~~d~~~~~--~~~~~~~~~ 265 (430)
++.|+.|++||+..... ........|...|.+++|+|+. +.+|++++.|+.|++||+++.. ....+..|.
T Consensus 74 s~~~dg~v~iwd~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~ 147 (379)
T 3jrp_A 74 SCSYDGKVLIWKEENGRW------SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHA 147 (379)
T ss_dssp EEETTSCEEEEEEETTEE------EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCT
T ss_pred EeccCCEEEEEEcCCCce------eEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCC
Confidence 45899999999986421 1122235678899999999942 7799999999999999998873 445667899
Q ss_pred cCeEEEEEcc-------------CCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCC---CCEEEE
Q 014125 266 GGVTHVQFSR-------------DGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPS---GRHLGT 329 (430)
Q Consensus 266 ~~i~~~~~~~-------------~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~ 329 (430)
..|.+++|+| ++.+|++++ .|+.|++||++..............|...|.+++|+|+ +.+|++
T Consensus 148 ~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s 226 (379)
T 3jrp_A 148 IGVNSASWAPATIEEDGEHNGTKESRKFVTGG-ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS 226 (379)
T ss_dssp TCEEEEEECCCC----------CTTCEEEEEE-TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE
T ss_pred CceEEEEEcCccccccccccCCCCCCEEEEEe-CCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEE
Confidence 9999999999 689999999 99999999998775544344444678999999999999 899999
Q ss_pred EccCCcEEEEEcCCCC-----eecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCCC
Q 014125 330 GGQDGLVHIYDLQTGK-----WISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFE 384 (430)
Q Consensus 330 ~~~dg~i~vwd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~ 384 (430)
++.||.|++||++++. .+.....|...|.+++|+|++++|++++.||.+++|+..
T Consensus 227 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 227 VSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 286 (379)
T ss_dssp EETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred EeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence 9999999999999864 233334588899999999999999999988877777643
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=279.48 Aligned_cols=277 Identities=12% Similarity=0.175 Sum_probs=203.5
Q ss_pred EECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCC-CCceEEEEe
Q 014125 67 KWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP-TSCVFASTT 145 (430)
Q Consensus 67 ~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~l~~~~ 145 (430)
.|+|+++.+++++ .|+... +. ...+..+|...|.+++| +| ++.+|++|+
T Consensus 34 ~f~~~~~~~~~~~------~w~~~g-~~----------------~~~~~~~h~~~V~~~~~-------s~~~~~~l~s~s 83 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGNLRG-KL----------------IATLMENEPNSITSSAV-------SPGETPYLITGS 83 (437)
T ss_dssp GGCCCCCCCCCCC------GGGCCC-CE----------------EEEECTTTTSCEEEEEE-------ECSSSCEEEEEE
T ss_pred hcCCccccccccc------cccccc-eE----------------EeeeccCCCCceEEEEE-------CCCCCCEEEEec
Confidence 4678888887765 376432 11 11222457789999999 66 889999999
Q ss_pred CCCcEEEEeccC---Cceee-eeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCC--CCCccccc-----cc
Q 014125 146 RDHPIHLWDATT---GLLRC-TYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHR--PGRDFEKY-----ST 213 (430)
Q Consensus 146 ~dg~i~vwd~~~---~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~--~~~~~~~~-----~~ 213 (430)
.||.|++||+.+ +.... ... ..+...|.+++|+|++.+|++ +.|+.|++||+.. .+...... ..
T Consensus 84 ~dg~v~vwd~~~~~~~~~~~~~~~----~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~ 159 (437)
T 3gre_A 84 DQGVIKIWNLKEIIVGEVYSSSLT----YDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRK 159 (437)
T ss_dssp TTSEEEEEEHHHHHTTCCCSCSEE----EECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred CCceEEEeECcccccCcccceeee----ccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEE
Confidence 999999999877 43211 111 123348999999999998884 5899999999952 11111100 00
Q ss_pred ccCCCCCCCcceEEEE--EcCCCCceEEEecCCCeEEEEEcCCceeeEEeec--cccCeEEEEEccCCCEEEEEecCCCe
Q 014125 214 LKGNKEGQAGIMSAIA--FSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG--QEGGVTHVQFSRDGNYLYTGGRKDPY 289 (430)
Q Consensus 214 ~~~~~~~~~~~v~~~~--~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~~d~~ 289 (430)
+.....++...+.++. ++| ++.++++|+.|+.|++||+++++.+..+.. |...|++++|+|++++|++++ .||.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~-~dg~ 237 (437)
T 3gre_A 160 INLKNFGKNEYAVRMRAFVNE-EKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGT-TRGI 237 (437)
T ss_dssp EEGGGGSSCCCEEEEEEEECS-SCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEE-TTSC
T ss_pred EEccCcccccCceEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEc-CCCe
Confidence 1000011445677776 456 677999999999999999999999999987 889999999999999999999 9999
Q ss_pred EEEEeCCCCceEEEEeecccCCccceEEEEEcC----CCCEEEEEccCCcEEEEEcCCCCeeccccc-------------
Q 014125 290 ILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEP----SGRHLGTGGQDGLVHIYDLQTGKWISGFQA------------- 352 (430)
Q Consensus 290 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~------------- 352 (430)
|++||+++..... .+. ..|...|.+++|+| ++.+|++|+.||.|++||+++++.+..+.+
T Consensus 238 i~iwd~~~~~~~~-~~~--~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (437)
T 3gre_A 238 IDIWDIRFNVLIR-SWS--FGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPI 314 (437)
T ss_dssp EEEEETTTTEEEE-EEB--CTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCB
T ss_pred EEEEEcCCccEEE-EEe--cCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceeccc
Confidence 9999999864332 221 25667899996664 678999999999999999999887666654
Q ss_pred -------------ccCCeeEEEEcCCCcEEEEeeCCceeeecCC
Q 014125 353 -------------AADTVNGFSFHPFLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 353 -------------~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~ 383 (430)
|...|++++|+ ++++|++++.|+.|++|+.
T Consensus 315 ~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~ 357 (437)
T 3gre_A 315 EKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSL 357 (437)
T ss_dssp CSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEET
T ss_pred ccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEEC
Confidence 44557777887 6678888887777777754
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-34 Score=264.72 Aligned_cols=293 Identities=10% Similarity=0.044 Sum_probs=218.3
Q ss_pred CceeEEEECcCCceEEEecCCCeEEEEeCCCCC---Ccccccccccc-----------------cccC------------
Q 014125 61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENG---ISYDVNACSLA-----------------KDQD------------ 108 (430)
Q Consensus 61 ~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~---~~~~~~~~~~~-----------------~~~~------------ 108 (430)
.++.+++|+|+|++|+++ .++.|++||+.+++ ........... ....
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 468999999999977665 57799999998887 33222211100 0000
Q ss_pred --------cccceeeecCCCeeeeeeeccccCccCCCCceE-EEEeCCCcEEEEecc--CCceeeeeecccccccccceE
Q 014125 109 --------SYEASLVVTEGESVYDFCWFPHMSASDPTSCVF-ASTTRDHPIHLWDAT--TGLLRCTYRAYDAVDEITAAF 177 (430)
Q Consensus 109 --------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~v~ 177 (430)
.........+...|.+++| +|++++| ++++.||.|++||+. +++....+..+. +...|.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~-------s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~---~~~~v~ 153 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRL-------TSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFC---FSKRPN 153 (450)
T ss_dssp ----------------CCCCCEEEEEE-------CTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEE---CSSCEE
T ss_pred ccccCccccCCCCCCCccCCceEEEEE-------cCCCCEEEEEECCCCeEEEEECcCCCCceeeeeeccc---CCCCce
Confidence 0000001134457999999 7789886 899999999999999 888777776422 223899
Q ss_pred EEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCC--CCceEEEecCCCeEEEEEcCC
Q 014125 178 SVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPT--HTGMLAIGSYSQTSAIYREDN 254 (430)
Q Consensus 178 ~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~v~~~d~~~ 254 (430)
+++|+|++.+|+++ .++.|++|++....... .......+|...|++++|+|+ ++.+|++|+.|+.|++||+++
T Consensus 154 ~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~----~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~ 229 (450)
T 2vdu_B 154 AISIAEDDTTVIIADKFGDVYSIDINSIPEEK----FTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQ 229 (450)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTSCCCSS----CCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESC
T ss_pred EEEEcCCCCEEEEEeCCCcEEEEecCCccccc----ccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCC
Confidence 99999999999855 88999999997643211 012234578889999999994 177999999999999999999
Q ss_pred ceeeEE-eeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecc---------------------cCCc
Q 014125 255 MELLYV-LHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRS---------------------SEHT 312 (430)
Q Consensus 255 ~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~---------------------~~~~ 312 (430)
++.+.. +.+|...|.+++|+ ++++|++++ .|+.|++||++++.......... ....
T Consensus 230 ~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~-~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (450)
T 2vdu_B 230 CFIVDKWLFGHKHFVSSICCG-KDYLLLSAG-GDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIE 307 (450)
T ss_dssp TTCEEEECCCCSSCEEEEEEC-STTEEEEEE-SSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBC
T ss_pred CceeeeeecCCCCceEEEEEC-CCCEEEEEe-CCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccce
Confidence 888776 56899999999999 999999999 99999999999875443221100 0234
Q ss_pred cceEEEEEcCCCCEEEEEc-cCCcEEEEEc--CCC---CeecccccccCCeeEEEEcCCCcEEEEe
Q 014125 313 NQRILFDIEPSGRHLGTGG-QDGLVHIYDL--QTG---KWISGFQAAADTVNGFSFHPFLPMAASS 372 (430)
Q Consensus 313 ~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~--~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 372 (430)
..+..++|+|++++|++++ .|+.|++|++ .++ +.+..+..| +.|.+++|+|++ ++++.
T Consensus 308 ~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~-~~v~~ 371 (450)
T 2vdu_B 308 FAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDE-FQVTL 371 (450)
T ss_dssp CCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTE-EEEEE
T ss_pred EEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCc-EEEEE
Confidence 5789999999999999998 8999999999 555 566777777 889999999954 44444
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-35 Score=265.63 Aligned_cols=280 Identities=16% Similarity=0.161 Sum_probs=210.6
Q ss_pred cCCCCCcceeeecceeecccCCCceeEEEECcC----C---ceEEEecCCCeEEEEeCCCCCCcccccccccccccCccc
Q 014125 39 FDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPD----G---SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYE 111 (430)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~----~---~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~ 111 (430)
|+........++.....+.+|...|++++|+|+ + ++|++++.||.|++|++.++..... ..
T Consensus 41 w~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~------------~~ 108 (397)
T 1sq9_A 41 WDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKK------------VI 108 (397)
T ss_dssp EESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCC------------EE
T ss_pred EECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCccccc------------cc
Confidence 443333322333456677899999999999999 9 9999999999999999986543100 00
Q ss_pred ceeeecC-----CCeeeeeeeccccCccCCCCce-EEEEeCCCcEEEEeccC------Cceee-----eeecc--ccccc
Q 014125 112 ASLVVTE-----GESVYDFCWFPHMSASDPTSCV-FASTTRDHPIHLWDATT------GLLRC-----TYRAY--DAVDE 172 (430)
Q Consensus 112 ~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~------~~~~~-----~~~~~--~~~~~ 172 (430)
......+ ...|.+++|++.. .|++.+ |++++.||.|++||+.+ ++.+. .+... ....+
T Consensus 109 ~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (397)
T 1sq9_A 109 FEKLDLLDSDMKKHSFWALKWGASN---DRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTP 185 (397)
T ss_dssp EEEECCSCTTGGGSCEEEEEEECCC-------CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSS
T ss_pred ceeecccccccCCCcEEEEEEeecc---CCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCC
Confidence 1122223 4789999994210 068889 99999999999999998 66555 44320 00112
Q ss_pred ccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccccccccCCCCC---C---CcceEEEEEcCCCCceEEEecCC-
Q 014125 173 ITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEG---Q---AGIMSAIAFSPTHTGMLAIGSYS- 244 (430)
Q Consensus 173 ~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~---~---~~~v~~~~~~~~~~~~l~~~~~d- 244 (430)
...|.+++|+|++ +++++ .|+.|++||++.... ...... | ...+.+++|+| ++.+|++++.|
T Consensus 186 ~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~--------~~~~~~~~~h~~~~~~i~~i~~~~-~~~~l~~~~~d~ 255 (397)
T 1sq9_A 186 SQFATSVDISERG-LIATGFNNGTVQISELSTLRP--------LYNFESQHSMINNSNSIRSVKFSP-QGSLLAIAHDSN 255 (397)
T ss_dssp CCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEE--------EEEEECCC---CCCCCEEEEEECS-STTEEEEEEEET
T ss_pred CCCceEEEECCCc-eEEEEeCCCcEEEEECCCCce--------eEEEeccccccccCCccceEEECC-CCCEEEEEecCC
Confidence 3389999999999 87755 899999999986321 111233 6 78899999999 67799999999
Q ss_pred --CeEEEEEcCCceeeEEeec-------------cccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeec--
Q 014125 245 --QTSAIYREDNMELLYVLHG-------------QEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYR-- 307 (430)
Q Consensus 245 --g~v~~~d~~~~~~~~~~~~-------------~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~-- 307 (430)
+.|++||+++++.+..+.. |...|.+++|+|++++|++++ .||.|++||+++..... .+..
T Consensus 256 ~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~-~~~~~~ 333 (397)
T 1sq9_A 256 SFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAG-WDGKLRFWDVKTKERIT-TLNMHC 333 (397)
T ss_dssp TEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEE-TTSEEEEEETTTTEEEE-EEECCG
T ss_pred CCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEe-CCCeEEEEEcCCCceeE-EEeccc
Confidence 9999999999999999988 999999999999999999999 99999999999875433 3320
Q ss_pred -ccCC---------------ccceEEEEEcCCC----------CEEEEEccCCcEEEEEcCCCC
Q 014125 308 -SSEH---------------TNQRILFDIEPSG----------RHLGTGGQDGLVHIYDLQTGK 345 (430)
Q Consensus 308 -~~~~---------------~~~v~~~~~~~~~----------~~l~~~~~dg~i~vwd~~~~~ 345 (430)
...| ...|.+++|+|++ ++|++++.||.|++|++.+++
T Consensus 334 ~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 334 DDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp GGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred CcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 0044 8899999999998 799999999999999998764
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-34 Score=254.06 Aligned_cols=283 Identities=14% Similarity=0.177 Sum_probs=226.1
Q ss_pred cceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE
Q 014125 111 EASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA 190 (430)
Q Consensus 111 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 190 (430)
.......|...|.+++| +|++++|++++.||.|++||+.+++.+..+..+.. .|.+++|+|++++|++
T Consensus 24 ~~~~l~~h~~~v~~~~~-------s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~s 91 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKY-------NKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTG-----TIWSIDVDCFTKYCVT 91 (369)
T ss_dssp EEEEEECCSSCEEEEEE-------CTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSS-----CEEEEEECTTSSEEEE
T ss_pred ccEEEEEeeceEEEEEE-------cCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCC-----cEEEEEEcCCCCEEEE
Confidence 33455678899999999 77899999999999999999999999988887665 8999999999999984
Q ss_pred -EcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCC-----CeEEEEEcCCce--------
Q 014125 191 -GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS-----QTSAIYREDNME-------- 256 (430)
Q Consensus 191 -~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~v~~~d~~~~~-------- 256 (430)
+.|+.|++||+...... ... .+...+.+++|+| ++..+++++.+ +.|++||+....
T Consensus 92 ~~~dg~i~iwd~~~~~~~----~~~-----~~~~~v~~~~~~~-~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~ 161 (369)
T 3zwl_B 92 GSADYSIKLWDVSNGQCV----ATW-----KSPVPVKRVEFSP-CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKV 161 (369)
T ss_dssp EETTTEEEEEETTTCCEE----EEE-----ECSSCEEEEEECT-TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEE
T ss_pred EeCCCeEEEEECCCCcEE----EEe-----ecCCCeEEEEEcc-CCCEEEEecCCccCCCCEEEEEEecCCccceeeccc
Confidence 58999999999864221 111 1566799999999 67788888888 999999987653
Q ss_pred ---eeEEeecccc--CeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEc
Q 014125 257 ---LLYVLHGQEG--GVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGG 331 (430)
Q Consensus 257 ---~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 331 (430)
....+..|.+ .+.+++|+|++++|++++ .||.|++||+++.......+ ..|...|.+++|+|++++|++++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~ 237 (369)
T 3zwl_B 162 SEEPIHKIITHEGLDAATVAGWSTKGKYIIAGH-KDGKISKYDVSNNYEYVDSI---DLHEKSISDMQFSPDLTYFITSS 237 (369)
T ss_dssp CSSCSEEEECCTTCCCEEEEEECGGGCEEEEEE-TTSEEEEEETTTTTEEEEEE---ECCSSCEEEEEECTTSSEEEEEE
T ss_pred ccceeeeccCCcCccceeEEEEcCCCCEEEEEc-CCCEEEEEECCCCcEeEEEE---ecCCCceeEEEECCCCCEEEEec
Confidence 3344455655 899999999999999999 99999999999854444343 46788999999999999999999
Q ss_pred cCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCCCccccccCCCcEEEEeecccccccccCC
Q 014125 332 QDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYASMMENADG 411 (430)
Q Consensus 332 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~ 411 (430)
.||.|++||+++++.+..+. +...+..++|+|+++++++++.++...+|.... ......+++|+...++.+..+.+
T Consensus 238 ~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~i~~~d~~~~~~~~~~~~ 313 (369)
T 3zwl_B 238 RDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSA---NEGKFEARFYHKIFEEEIGRVQG 313 (369)
T ss_dssp TTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC----------------CEEEEEETTTCCEEEEEEC
T ss_pred CCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEec---CCCcceeEEEecCCCcchhheec
Confidence 99999999999999988887 778999999999999999999988777664322 22344789999998888888887
Q ss_pred CCcceeeeeccCc
Q 014125 412 INGCEFNCQSEHE 424 (430)
Q Consensus 412 ~~~~~~~~~~~~~ 424 (430)
|.+ .+.++...+
T Consensus 314 ~~~-~v~~~~~s~ 325 (369)
T 3zwl_B 314 HFG-PLNTVAISP 325 (369)
T ss_dssp CSS-CEEEEEECT
T ss_pred ccC-cEEEEEECC
Confidence 766 455555443
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-35 Score=259.99 Aligned_cols=256 Identities=12% Similarity=0.064 Sum_probs=193.8
Q ss_pred ecccCCCceeEEEECcCCceEEEe-----------cCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeee
Q 014125 55 TSSIPNNFLKGIKWSPDGSSFLTS-----------SEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVY 123 (430)
Q Consensus 55 ~~~~h~~~v~~~~~sp~~~~l~s~-----------~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 123 (430)
.+.+|.+.|.++++++ +.+++| +.|+.+++|++............. .......+...+.
T Consensus 68 ~l~~~~~~v~s~~~~~--~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~ 137 (365)
T 4h5i_A 68 ALEDNDDSPTAIDASK--GIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSV--------DFDASTNADDYTK 137 (365)
T ss_dssp ECCTTSCCCCEEEEET--TEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEE--------CSSCCCCTTCCEE
T ss_pred EccCCCCceEEEEeCC--CEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeee--------ceeecCCcccCEE
Confidence 5788999999987754 555554 457789999876543211110000 0001112334578
Q ss_pred eeeeccccCccCCCCceEEEE--eCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEc
Q 014125 124 DFCWFPHMSASDPTSCVFAST--TRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDV 201 (430)
Q Consensus 124 ~~~~~~~~~~~~~~~~~l~~~--~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~ 201 (430)
+++| +|||++++++ +.|++|++||+.+++.+..+... . .|.+++|+|+|++++++.++.+++|+.
T Consensus 138 ~v~f-------SpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~-~-----~V~~v~fspdg~~l~s~s~~~~~~~~~ 204 (365)
T 4h5i_A 138 LVYI-------SREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETR-G-----EVKDLHFSTDGKVVAYITGSSLEVIST 204 (365)
T ss_dssp EEEE-------CTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECS-S-----CCCEEEECTTSSEEEEECSSCEEEEET
T ss_pred EEEE-------cCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCC-C-----ceEEEEEccCCceEEeccceeEEEEEe
Confidence 8888 7899998754 47899999999999988877532 2 799999999999999887888888887
Q ss_pred CCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCC----eEEEEEcCCcee----eEEeeccccCeEEEEE
Q 014125 202 HRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ----TSAIYREDNMEL----LYVLHGQEGGVTHVQF 273 (430)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg----~v~~~d~~~~~~----~~~~~~~~~~i~~~~~ 273 (430)
..+... .......|...+.+++|+| ++..+++++.++ .+++|++..... ...+.+|...|++++|
T Consensus 205 ~~~~~~------~~~~~~~~~~~v~~v~fsp-dg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~ 277 (365)
T 4h5i_A 205 VTGSCI------ARKTDFDKNWSLSKINFIA-DDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDV 277 (365)
T ss_dssp TTCCEE------EEECCCCTTEEEEEEEEEE-TTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEE
T ss_pred ccCcce------eeeecCCCCCCEEEEEEcC-CCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEE
Confidence 664321 1122356788899999999 667888888776 688899876543 3456788899999999
Q ss_pred ccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCC
Q 014125 274 SRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTG 344 (430)
Q Consensus 274 ~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 344 (430)
+|+|++|++++ .|+.|+|||+++++..... ..+|...|++++|+|||++||+|+.|++|+|||+...
T Consensus 278 Spdg~~lasgs-~D~~V~iwd~~~~~~~~~~---~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 278 DMKGELAVLAS-NDNSIALVKLKDLSMSKIF---KQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp CTTSCEEEEEE-TTSCEEEEETTTTEEEEEE---TTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred CCCCCceEEEc-CCCEEEEEECCCCcEEEEe---cCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 99999999999 9999999999987543322 2579999999999999999999999999999999643
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-35 Score=268.50 Aligned_cols=280 Identities=16% Similarity=0.198 Sum_probs=212.1
Q ss_pred eecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECC-CCcEEEE-Ec
Q 014125 115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNP-TGTKIFA-GY 192 (430)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~-~~ 192 (430)
...|...|++++|+|. ++++||+|+.||.|+|||+.+++....+... .|...|.+++|+| ++.+|++ +.
T Consensus 115 ~~~~~~~V~~l~~~P~------~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~---gH~~~V~~l~f~p~~~~~l~s~s~ 185 (435)
T 4e54_B 115 AAPFDRRATSLAWHPT------HPSTVAVGSKGGDIMLWNFGIKDKPTFIKGI---GAGGSITGLKFNPLNTNQFYASSM 185 (435)
T ss_dssp EEECSSCEEEEEECSS------CTTCEEEEETTSCEEEECSSCCSCCEEECCC---SSSCCCCEEEECSSCTTEEEEECS
T ss_pred CCCCCCCEEEEEEeCC------CCCEEEEEeCCCEEEEEECCCCCceeEEEcc---CCCCCEEEEEEeCCCCCEEEEEeC
Confidence 3456678999999553 5678999999999999999887655544322 2334899999998 5778885 58
Q ss_pred CCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEE
Q 014125 193 NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQ 272 (430)
Q Consensus 193 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~ 272 (430)
|++|++||++... .. .. .....+...+.+++|+| ++.+|++|+.||.|++||++ ++.+..+.+|...|++++
T Consensus 186 D~~v~iwd~~~~~--~~---~~-~~~~~~~~~~~~~~~~~-~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~ 257 (435)
T 4e54_B 186 EGTTRLQDFKGNI--LR---VF-ASSDTINIWFCSLDVSA-SSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVA 257 (435)
T ss_dssp SSCEEEEETTSCE--EE---EE-ECCSSCSCCCCCEEEET-TTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEE
T ss_pred CCEEEEeeccCCc--ee---EE-eccCCCCccEEEEEECC-CCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeee
Confidence 9999999997521 11 11 11133445688999999 67799999999999999996 456677889999999999
Q ss_pred EccCCC-EEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccc
Q 014125 273 FSRDGN-YLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQ 351 (430)
Q Consensus 273 ~~~~~~-~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 351 (430)
|+|++. +|++++ .|+.|++||+++..... .+....+|...|++++|+|+|.+|++++.||.|+|||+.+++....+.
T Consensus 258 ~~p~~~~~~~s~s-~d~~v~iwd~~~~~~~~-~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~ 335 (435)
T 4e54_B 258 LNPCCDWFLATAS-VDQTVKIWDLRQVRGKA-SFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLI 335 (435)
T ss_dssp ECTTCSSEEEEEE-TTSBCCEEETTTCCSSS-CCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEEC
T ss_pred ecCCCceEEEEec-CcceeeEEecccccccc-eEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEe
Confidence 999987 566677 99999999998764322 222335788999999999999999999999999999999998877776
Q ss_pred cccC------CeeEEEEcCCCcEEEEeeC-CceeeecCCCccccccCCCcEEEEeecccccccccCCCCcceeee
Q 014125 352 AAAD------TVNGFSFHPFLPMAASSSG-HRRFPVDDFEDLHLSGDENCVSVWSFLYASMMENADGINGCEFNC 419 (430)
Q Consensus 352 ~~~~------~v~~~~~~~~~~~l~s~~~-d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~ 419 (430)
.|.. .+....|+|++.++++++. |+.+. +.++.+++.|++|+...++.+..+.+.....+.+
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s 404 (435)
T 4e54_B 336 PHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFK------SCTPYELRTIDVFDGNSGKMMCQLYDPESSGISS 404 (435)
T ss_dssp CCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSC------CSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCC
T ss_pred cccccccccceeEEEEEcCCCCEEEEEEcCCCCeE------EEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEE
Confidence 6543 3456789999998888754 33333 2344567789999999988887765433323343
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-35 Score=284.01 Aligned_cols=259 Identities=18% Similarity=0.242 Sum_probs=206.6
Q ss_pred eecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCc
Q 014125 54 RTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (430)
Q Consensus 54 ~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (430)
.++.+|.+.|++++|+|+|++|++|+.||.|+|||+.++. .........|..+|.+++|+|
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~---------------~~~~~~l~~h~~~V~~l~~s~---- 63 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET---------------HKLIDTLTGHEGPVWRVDWAH---- 63 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTE---------------EEEEEEECCCSSCEEEEEECC----
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCC---------------CccceeccCCcCceEEEEecC----
Confidence 4678999999999999999999999999999999986321 112223445778999999944
Q ss_pred cCCCCceEEEEeCCCcEEEEeccCCc--eeeeeecccccccccceEEEEECCC--CcEEE-EEcCCeEEEEEcCCCCCcc
Q 014125 134 SDPTSCVFASTTRDHPIHLWDATTGL--LRCTYRAYDAVDEITAAFSVAFNPT--GTKIF-AGYNKSVRVFDVHRPGRDF 208 (430)
Q Consensus 134 ~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~-~~~d~~i~v~d~~~~~~~~ 208 (430)
..++++|++|+.||.|++||+.+++ ....+..+.. .|.+++|+|+ +..++ ++.||.|++||++......
T Consensus 64 -~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~-----~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~ 137 (753)
T 3jro_A 64 -PKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSA-----SVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTS 137 (753)
T ss_dssp -TTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSS-----CEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCC
T ss_pred -CCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCC-----CeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcc
Confidence 2238999999999999999999986 4455554444 8999999999 88888 4589999999998753211
Q ss_pred cccccccCCCCCCCcceEEEEEcCC------------CCceEEEecCCCeEEEEEcCCc----eeeEEeeccccCeEEEE
Q 014125 209 EKYSTLKGNKEGQAGIMSAIAFSPT------------HTGMLAIGSYSQTSAIYREDNM----ELLYVLHGQEGGVTHVQ 272 (430)
Q Consensus 209 ~~~~~~~~~~~~~~~~v~~~~~~~~------------~~~~l~~~~~dg~v~~~d~~~~----~~~~~~~~~~~~i~~~~ 272 (430)
.....+|...|.+++|+|. ++.++++|+.||.|++||++++ .....+.+|...|++++
T Consensus 138 ------~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~ 211 (753)
T 3jro_A 138 ------PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVA 211 (753)
T ss_dssp ------CEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEE
T ss_pred ------eeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEE
Confidence 1123567889999999995 3779999999999999999876 55677788999999999
Q ss_pred EccC---CCEEEEEecCCCeEEEEeCCCCceE-EEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCC
Q 014125 273 FSRD---GNYLYTGGRKDPYILCWDLRKAVQV-VYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTG 344 (430)
Q Consensus 273 ~~~~---~~~l~~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 344 (430)
|+|+ +.+|++++ .||.|++||+++.... .........|...+++++|+|+|++|++|+.||.|++|++.++
T Consensus 212 ~sp~~~~~~~l~s~s-~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 212 WSPTVLLRSYLASVS-QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp ECCCCSSSEEEEEEE-SSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred eccCCCCCCEEEEEe-cCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence 9999 89999999 9999999999876321 1122333567889999999999999999999999999999853
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-34 Score=260.79 Aligned_cols=294 Identities=14% Similarity=0.113 Sum_probs=199.7
Q ss_pred eeEEEE---CcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecccc--------
Q 014125 63 LKGIKW---SPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM-------- 131 (430)
Q Consensus 63 v~~~~~---sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------- 131 (430)
..++.| +|++..|++++.|+.|.+|+.......... ...........++.++..+.|.+..
T Consensus 18 p~~~~w~~~~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (393)
T 4gq1_A 18 PYTTTWCSQSPSCSNLLAIGHDTGITIYCASEEQTPGST--------GLTLQELFTIQTGLPTLHLSFSSSCSYSENLHD 89 (393)
T ss_dssp EEEEEECTTSGGGTTEEEEEESSEEEEEEEEECCSSSCC--------SEEEEEEEEEECSSCEEEEEECTTCEEECC---
T ss_pred CeEEEEeCCCCCCCCEEEEECCCCEEEEECCCCCccccc--------ccceeeeEEEecCCCeeeEeecCCccccccccC
Confidence 445666 444445555666888999986533211100 0011112233444556666664421
Q ss_pred -----CccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECC--------CCcEEE-EEcCCeEE
Q 014125 132 -----SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNP--------TGTKIF-AGYNKSVR 197 (430)
Q Consensus 132 -----~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--------~~~~l~-~~~d~~i~ 197 (430)
..+++++.+|++++.|++|++||+.++.............|...|.+++|+| ++++|+ ++.|++|+
T Consensus 90 ~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~ 169 (393)
T 4gq1_A 90 GDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLI 169 (393)
T ss_dssp -------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEE
T ss_pred CCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEE
Confidence 1224567789999999999999999887654433333334556999999998 788888 55999999
Q ss_pred EEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEE-----------------
Q 014125 198 VFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYV----------------- 260 (430)
Q Consensus 198 v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~----------------- 260 (430)
|||+...... .....|...+.+++|+|++.++|++|+.|++|++||+++++....
T Consensus 170 ~Wd~~~~~~~--------~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~ 241 (393)
T 4gq1_A 170 IWRLTDEGPI--------LAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNT 241 (393)
T ss_dssp EEEEETTEEE--------EEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEES
T ss_pred EEECCCCcee--------eeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccc
Confidence 9999764221 112456778999999997777999999999999999987654322
Q ss_pred --------eeccccCeEEEEEc-cCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccc-----------------
Q 014125 261 --------LHGQEGGVTHVQFS-RDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQ----------------- 314 (430)
Q Consensus 261 --------~~~~~~~i~~~~~~-~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~----------------- 314 (430)
..+|...+.++.|+ |+++.|++++ .|+.+++||+....... .+ ..+...
T Consensus 242 ~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s-~d~~i~vwd~~~~~~~~-~l---~~~~~~~~~~~~~~~~~~~~~~~ 316 (393)
T 4gq1_A 242 LPLVNTCHSSGIASSLANVRWIGSDGSGILAMC-KSGAWLRWNLFANNDYN-EI---SDSTMKLGPKNLLPNVQGISLFP 316 (393)
T ss_dssp GGGC------CCSSSCSEEEEETTTTCEEEEEC-TTSEEEEEEC-----------------------CCSCSEEEECSSC
T ss_pred ccceeeeecccccccceeeeeecCCCCEEEEEe-CCCCEEEEECccCCCCc-eE---eeecCccccEEEccccccccccC
Confidence 13466788899986 7999999999 99999999998653221 11 111111
Q ss_pred -eEEEEEcC--CCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCce
Q 014125 315 -RILFDIEP--SGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRR 377 (430)
Q Consensus 315 -v~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~ 377 (430)
.....++| ++.++++|+.||.|++||+.+++.+..+..|..+|.+++|+|+|++||+++.+|.
T Consensus 317 ~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~Gv 382 (393)
T 4gq1_A 317 SLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGSV 382 (393)
T ss_dssp CSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSEE
T ss_pred cceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCe
Confidence 12233443 3456788999999999999999998888889999999999999999999986543
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-34 Score=254.97 Aligned_cols=242 Identities=12% Similarity=0.119 Sum_probs=202.7
Q ss_pred cCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCc--eeeeeecccccccccceEEEEECCCCcEEEE-EcC
Q 014125 117 TEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGL--LRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYN 193 (430)
Q Consensus 117 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d 193 (430)
.|..+|.+++| +|++++|++++.|+.|++||+.+++ ....+..+.. .|.+++|+|++.+|++ +.|
T Consensus 6 ~~~~~i~~~~~-------s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~~~~~d 73 (372)
T 1k8k_C 6 FLVEPISCHAW-------NKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNG-----QVTGVDWAPDSNRIVTCGTD 73 (372)
T ss_dssp SCSSCCCEEEE-------CTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSS-----CEEEEEEETTTTEEEEEETT
T ss_pred ccCCCeEEEEE-------CCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCC-----cccEEEEeCCCCEEEEEcCC
Confidence 36689999999 7789999999999999999999987 6777766554 8999999999999985 589
Q ss_pred CeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCcee----eEEeeccccCeE
Q 014125 194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL----LYVLHGQEGGVT 269 (430)
Q Consensus 194 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~----~~~~~~~~~~i~ 269 (430)
+.|++||+..... ........|...+.+++|+| ++.+|++++.|+.|++||++.+.. ......|...|.
T Consensus 74 g~i~vwd~~~~~~------~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~ 146 (372)
T 1k8k_C 74 RNAYVWTLKGRTW------KPTLVILRINRAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVL 146 (372)
T ss_dssp SCEEEEEEETTEE------EEEEECCCCSSCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEE
T ss_pred CeEEEEECCCCee------eeeEEeecCCCceeEEEECC-CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCee
Confidence 9999999966321 01111246778899999999 677999999999999999988762 233356889999
Q ss_pred EEEEccCCCEEEEEecCCCeEEEEeCC------------------CCceEEEEeecccCCccceEEEEEcCCCCEEEEEc
Q 014125 270 HVQFSRDGNYLYTGGRKDPYILCWDLR------------------KAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGG 331 (430)
Q Consensus 270 ~~~~~~~~~~l~~~~~~d~~i~i~d~~------------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 331 (430)
+++|+|++++|++++ .||.|++||++ .. ..... ...|...+.+++|+|++++|++++
T Consensus 147 ~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~ 221 (372)
T 1k8k_C 147 SLDWHPNSVLLAAGS-CDFKCRIFSAYIKEVEERPAPTPWGSKMPFG-ELMFE---SSSSCGWVHGVCFSANGSRVAWVS 221 (372)
T ss_dssp EEEECTTSSEEEEEE-TTSCEEEEECCCTTTSCCCCCBTTBSCCCTT-CEEEE---CCCCSSCEEEEEECSSSSEEEEEE
T ss_pred EEEEcCCCCEEEEEc-CCCCEEEEEcccccccccccccccccccchh-hheEe---cCCCCCeEEEEEECCCCCEEEEEe
Confidence 999999999999999 99999999964 22 22222 247888999999999999999999
Q ss_pred cCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCC
Q 014125 332 QDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 332 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~ 383 (430)
.||.|++||+++++.+..+..|..+|.+++|+|++.+|+++ .|+.+++|+.
T Consensus 222 ~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~ 272 (372)
T 1k8k_C 222 HDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTY 272 (372)
T ss_dssp TTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEE
T ss_pred CCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEc
Confidence 99999999999999999999999999999999999988887 7777777654
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-34 Score=256.54 Aligned_cols=262 Identities=14% Similarity=0.131 Sum_probs=205.0
Q ss_pred ccCCCceeEEEECcC---CceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCc
Q 014125 57 SIPNNFLKGIKWSPD---GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (430)
Q Consensus 57 ~~h~~~v~~~~~sp~---~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (430)
.+|.+.|++++|+|+ +++|++|+.||.|++||+.+++. .......|...|.+++|.+. .+
T Consensus 62 ~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----------------~~~~~~~~~~~v~~~~~~~~-~~ 124 (357)
T 3i2n_A 62 IEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEM----------------PVYSVKGHKEIINAIDGIGG-LG 124 (357)
T ss_dssp EEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSS----------------CSEEECCCSSCEEEEEEESG-GG
T ss_pred ecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCc----------------cEEEEEecccceEEEeeccc-cc
Confidence 379999999999998 69999999999999999987641 11223356788999988653 24
Q ss_pred cCCCCceEEEEeCCCcEEEEeccCCc-eeeeeecccccccccceEEEE----ECCCCcEEEEE-cCCeEEEEEcCCCCCc
Q 014125 134 SDPTSCVFASTTRDHPIHLWDATTGL-LRCTYRAYDAVDEITAAFSVA----FNPTGTKIFAG-YNKSVRVFDVHRPGRD 207 (430)
Q Consensus 134 ~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~v~~~~----~~~~~~~l~~~-~d~~i~v~d~~~~~~~ 207 (430)
++|++++|++++.||.|++||+.+++ ....+..+.. .....+.+++ |+|++.+++++ .|+.|++||++....
T Consensus 125 ~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~- 202 (357)
T 3i2n_A 125 IGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQG-ENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMAL- 202 (357)
T ss_dssp CC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTT-SCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEE-
T ss_pred cCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCC-CCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCce-
Confidence 58899999999999999999999887 5666655433 1223677887 78899999955 889999999987421
Q ss_pred ccccccccCCCCCCCcceEEEEEcCC--CCceEEEecCCCeEEEEEcCCceeeEEee-----ccccCeEEEEEccCCC-E
Q 014125 208 FEKYSTLKGNKEGQAGIMSAIAFSPT--HTGMLAIGSYSQTSAIYREDNMELLYVLH-----GQEGGVTHVQFSRDGN-Y 279 (430)
Q Consensus 208 ~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~v~~~d~~~~~~~~~~~-----~~~~~i~~~~~~~~~~-~ 279 (430)
.....|...+.+++|+|. ++..+++++.||.|++||+++++....+. .|...|++++|+|+++ +
T Consensus 203 --------~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 274 (357)
T 3i2n_A 203 --------RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNREL 274 (357)
T ss_dssp --------EEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEE
T ss_pred --------eeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcE
Confidence 111355678999999994 45689999999999999999877655544 8999999999999998 7
Q ss_pred EEEEecCCCeEEEEeCCCCceEE---------------EEeecccCCccceEEEEEcCCCCEEE-EEccCCcEEEEEcCC
Q 014125 280 LYTGGRKDPYILCWDLRKAVQVV---------------YKLYRSSEHTNQRILFDIEPSGRHLG-TGGQDGLVHIYDLQT 343 (430)
Q Consensus 280 l~~~~~~d~~i~i~d~~~~~~~~---------------~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~vwd~~~ 343 (430)
|++++ .||.|++||++...... ..+.....|...|.+++|+|++++|+ +++.||.|++||+.+
T Consensus 275 l~~~~-~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~ 353 (357)
T 3i2n_A 275 FLTAG-GAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTK 353 (357)
T ss_dssp EEEEE-TTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC
T ss_pred EEEEe-CCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCC
Confidence 88888 99999999998653221 22333467889999999999999998 899999999999987
Q ss_pred CCe
Q 014125 344 GKW 346 (430)
Q Consensus 344 ~~~ 346 (430)
.+.
T Consensus 354 ~~~ 356 (357)
T 3i2n_A 354 LNK 356 (357)
T ss_dssp ---
T ss_pred ccc
Confidence 654
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-33 Score=246.02 Aligned_cols=254 Identities=23% Similarity=0.346 Sum_probs=198.4
Q ss_pred ceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecccc
Q 014125 52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (430)
Q Consensus 52 ~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (430)
..+.+.+|.+.|++++|+|+|++|++|+.|+.|++|+...... ......+...+....+
T Consensus 78 ~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~---- 136 (340)
T 4aow_A 78 PQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTT-----------------TRRFVGHTKDVLSVAF---- 136 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-----------------EEEEECCSSCEEEEEE----
T ss_pred eeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccce-----------------eeeecCCCCceeEEEE----
Confidence 3567889999999999999999999999999999999876432 1222334456677777
Q ss_pred CccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCC--cEEE-EEcCCeEEEEEcCCCCCcc
Q 014125 132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG--TKIF-AGYNKSVRVFDVHRPGRDF 208 (430)
Q Consensus 132 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~-~~~d~~i~v~d~~~~~~~~ 208 (430)
++++..|++++.|+.+++||+.......... ..+...+..++|++++ .+++ ++.|+.|++||++..
T Consensus 137 ---~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~---- 205 (340)
T 4aow_A 137 ---SSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD----ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC---- 205 (340)
T ss_dssp ---CTTSSCEEEEETTSCEEEECTTSCEEEEECS----SSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTT----
T ss_pred ---eecCccceeecCCCeEEEEEeCCCceEEEEe----ccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCC----
Confidence 6688999999999999999987654432211 1223378899998875 4455 558999999999863
Q ss_pred cccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCC
Q 014125 209 EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDP 288 (430)
Q Consensus 209 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~ 288 (430)
.......+|...|++++|+| ++.+|++|+.||.|++||+++.+.+..+.. ...|.+++|+|++.++ +++ .|+
T Consensus 206 ----~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~-~~~-~d~ 277 (340)
T 4aow_A 206 ----KLKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GDIINALCFSPNRYWL-CAA-TGP 277 (340)
T ss_dssp ----EEEEEECCCSSCEEEEEECT-TSSEEEEEETTCEEEEEETTTTEEEEEEEC-SSCEEEEEECSSSSEE-EEE-ETT
T ss_pred ----ceeeEecCCCCcEEEEEECC-CCCEEEEEeCCCeEEEEEeccCceeeeecC-CceEEeeecCCCCcee-ecc-CCC
Confidence 22233467889999999999 677999999999999999999999888874 4689999999988655 555 699
Q ss_pred eEEEEeCCCCceEEEEe-----ecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCC
Q 014125 289 YILCWDLRKAVQVVYKL-----YRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGK 345 (430)
Q Consensus 289 ~i~i~d~~~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 345 (430)
.|++||+++........ .....|...|++++|+|+|++|++|+.||.|+|||+.+|+
T Consensus 278 ~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 278 SIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred EEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 99999998764332111 1224678899999999999999999999999999999885
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-34 Score=255.48 Aligned_cols=268 Identities=13% Similarity=0.107 Sum_probs=198.7
Q ss_pred EEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEe
Q 014125 66 IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTT 145 (430)
Q Consensus 66 ~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 145 (430)
..+.+++++|++|+.||+|++||+.+++....+. ...|.++.|+ |+ +++++
T Consensus 42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~-------------------~~~v~~~~~~-------~~---~~s~s 92 (343)
T 3lrv_A 42 KSMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT-------------------TPNPRTGGEH-------PA---IISRG 92 (343)
T ss_dssp SSSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE-------------------EECCCTTCCC-------CS---EEEEC
T ss_pred hhhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe-------------------cCCceeeeeC-------Cc---eEEec
Confidence 3455688999999999999999998765432211 2467777774 44 99999
Q ss_pred CCCcEEEEecc---------CCceeeeeecccccccccceEEEEECC--CCcEEE-EEcCCeEEEEEcCCCCCccccccc
Q 014125 146 RDHPIHLWDAT---------TGLLRCTYRAYDAVDEITAAFSVAFNP--TGTKIF-AGYNKSVRVFDVHRPGRDFEKYST 213 (430)
Q Consensus 146 ~dg~i~vwd~~---------~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~ 213 (430)
.|++|++|+.. +++.+..+.. .+...|.+++|+| ++.+++ ++.|+.|++||++.... .
T Consensus 93 ~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-~----- 162 (343)
T 3lrv_A 93 PCNRLLLLYPGNQITILDSKTNKVLREIEV----DSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ-Y----- 162 (343)
T ss_dssp STTEEEEEETTTEEEEEETTTCCEEEEEEC----CCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCE-E-----
T ss_pred CCCeEEEEEccCceEEeecCCcceeEEeec----CCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE-E-----
Confidence 99999999765 3333333331 1223799999999 999999 55899999999986432 1
Q ss_pred ccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceee-EEeec-cccCeEEEEEccCCCEEEEEecCCCeEE
Q 014125 214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELL-YVLHG-QEGGVTHVQFSRDGNYLYTGGRKDPYIL 291 (430)
Q Consensus 214 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~-~~~~~-~~~~i~~~~~~~~~~~l~~~~~~d~~i~ 291 (430)
......+...+.+++|+| ++.+|++|+.||.|++||+++++.. ..+.. |.++|++++|+|++.+|++++ .+ .|+
T Consensus 163 -~~~~~~~~~~i~~~~~~p-dg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~-~v~ 238 (343)
T 3lrv_A 163 -IVHSAKSDVEYSSGVLHK-DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQ-TVV 238 (343)
T ss_dssp -EEECCCSSCCCCEEEECT-TSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SS-BEE
T ss_pred -EEEecCCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CC-eEE
Confidence 111123455699999999 6779999999999999999999877 77887 999999999999999999998 55 999
Q ss_pred EEeCCCCceEEEEeecccCCccce--EEEEEcCCCCEEEEEcc-CCcEEEEEcCCCCeecccccccCCeeEEEEcC---C
Q 014125 292 CWDLRKAVQVVYKLYRSSEHTNQR--ILFDIEPSGRHLGTGGQ-DGLVHIYDLQTGKWISGFQAAADTVNGFSFHP---F 365 (430)
Q Consensus 292 i~d~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~---~ 365 (430)
+||+++..... .+.....+...+ .+++|+|+|++|++++. |+.|++|++.+....... .++..+.|.| +
T Consensus 239 iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~ 313 (343)
T 3lrv_A 239 CFDLRKDVGTL-AYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTAD 313 (343)
T ss_dssp EEETTSSTTCB-SSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CC
T ss_pred EEEcCCCCcce-eecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccc
Confidence 99999875321 111111122233 46999999999999988 999999999766543322 5678889998 8
Q ss_pred CcEEEEeeCCceeeec
Q 014125 366 LPMAASSSGHRRFPVD 381 (430)
Q Consensus 366 ~~~l~s~~~d~~~~vw 381 (430)
...+++++.|+.+.++
T Consensus 314 ~~~l~~~~~d~~~~~~ 329 (343)
T 3lrv_A 314 FTDMDVVCGDGGIAAI 329 (343)
T ss_dssp CCEEEEEEETTEEEEE
T ss_pred cceeEEEecCCceEEE
Confidence 8899999887777665
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-34 Score=263.32 Aligned_cols=257 Identities=11% Similarity=0.113 Sum_probs=194.4
Q ss_pred cCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCc-----------eeeeeeccccc-------ccccceEE
Q 014125 117 TEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGL-----------LRCTYRAYDAV-------DEITAAFS 178 (430)
Q Consensus 117 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-----------~~~~~~~~~~~-------~~~~~v~~ 178 (430)
.+...|.+++| +|++.+|++|+.||.|++||+.+++ ....+..|... .....|.+
T Consensus 26 ~~~~~V~~v~~-------s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~ 98 (447)
T 3dw8_B 26 AEADIISTVEF-------NHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINK 98 (447)
T ss_dssp CGGGSEEEEEE-------CSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCE
T ss_pred cccCcEEEEEE-------CCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEE
Confidence 45579999999 7789999999999999999998876 35566655410 00137999
Q ss_pred EEECCCC--cEEE-EEcCCeEEEEEcCCCCCccccc--------------------------------ccccCCCCCCCc
Q 014125 179 VAFNPTG--TKIF-AGYNKSVRVFDVHRPGRDFEKY--------------------------------STLKGNKEGQAG 223 (430)
Q Consensus 179 ~~~~~~~--~~l~-~~~d~~i~v~d~~~~~~~~~~~--------------------------------~~~~~~~~~~~~ 223 (430)
++|+|++ ..++ ++.|+.|++||+.......... ........+|..
T Consensus 99 l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 178 (447)
T 3dw8_B 99 IRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTY 178 (447)
T ss_dssp EEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSS
T ss_pred EEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCc
Confidence 9999998 5666 5699999999987522100000 000011357889
Q ss_pred ceEEEEEcCCCCceEEEecCCCeEEEEEcCCc-eeeE-------EeeccccCeEEEEEccCC-CEEEEEecCCCeEEEEe
Q 014125 224 IMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-ELLY-------VLHGQEGGVTHVQFSRDG-NYLYTGGRKDPYILCWD 294 (430)
Q Consensus 224 ~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~-~~~~-------~~~~~~~~i~~~~~~~~~-~~l~~~~~~d~~i~i~d 294 (430)
.|.+++|+| ++.+|++| .|+.|++||+++. +... .+..|...|++++|+|++ .+|++++ .||.|++||
T Consensus 179 ~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~dg~i~iwd 255 (447)
T 3dw8_B 179 HINSISINS-DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSS-SKGTIRLCD 255 (447)
T ss_dssp CCCEEEECT-TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEE-TTSCEEEEE
T ss_pred ceEEEEEcC-CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEe-CCCeEEEEE
Confidence 999999999 67788888 7999999999844 4443 255788999999999998 8999999 999999999
Q ss_pred CCCCceEEEEeecccCCcc------------ceEEEEEcCCCCEEEEEccCCcEEEEEcCC-CCeecccccccCC-----
Q 014125 295 LRKAVQVVYKLYRSSEHTN------------QRILFDIEPSGRHLGTGGQDGLVHIYDLQT-GKWISGFQAAADT----- 356 (430)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~------------~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~----- 356 (430)
+++.............|.. .|.+++|+|+|++|++++. +.|++||+++ ++++..+.+|...
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~ 334 (447)
T 3dw8_B 256 MRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLC 334 (447)
T ss_dssp TTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHH
T ss_pred CcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccc
Confidence 9987531000111133443 8999999999999999999 9999999997 8888888888642
Q ss_pred ----------eeEEEEcCCCcEEEEeeCCceeeecCCC
Q 014125 357 ----------VNGFSFHPFLPMAASSSGHRRFPVDDFE 384 (430)
Q Consensus 357 ----------v~~~~~~~~~~~l~s~~~d~~~~vw~~~ 384 (430)
+..++|+|++++|++++.|+.|++|+..
T Consensus 335 ~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~ 372 (447)
T 3dw8_B 335 SLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRN 372 (447)
T ss_dssp HHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETT
T ss_pred ccccccccccceEEEECCCCCEEEEeccCCEEEEEEcC
Confidence 2349999999999999988888777654
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-33 Score=257.40 Aligned_cols=266 Identities=16% Similarity=0.277 Sum_probs=204.8
Q ss_pred eecccCCCceeEEEECcC-CceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccC
Q 014125 54 RTSSIPNNFLKGIKWSPD-GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS 132 (430)
Q Consensus 54 ~~~~~h~~~v~~~~~sp~-~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 132 (430)
....+|.+.|++++|+|+ +.+||+++.||.|++|++........ .............|...|.+++|
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~-------~~~~~~~~~~~~~h~~~v~~l~~----- 189 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE-------PSGECQPDLRLRGHQKEGYGLSW----- 189 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC-------TTCCCCCSEEEECCSSCCCCEEE-----
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC-------ccccCCCcEEecCCCCCeEEEEe-----
Confidence 345689999999999997 78999999999999999975321100 00011222344567889999999
Q ss_pred ccCCCCc-eEEEEeCCCcEEEEeccCCce-------eeeeecccccccccceEEEEECC-CCcEEEE-EcCCeEEEEEcC
Q 014125 133 ASDPTSC-VFASTTRDHPIHLWDATTGLL-------RCTYRAYDAVDEITAAFSVAFNP-TGTKIFA-GYNKSVRVFDVH 202 (430)
Q Consensus 133 ~~~~~~~-~l~~~~~dg~i~vwd~~~~~~-------~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~-~~d~~i~v~d~~ 202 (430)
+|++. +|++|+.||.|++|++.++.. ...+.. +...|.+++|+| ++.++++ +.|+.|++||++
T Consensus 190 --~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-----h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~ 262 (430)
T 2xyi_A 190 --NPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTG-----HTAVVEDVAWHLLHESLFGSVADDQKLMIWDTR 262 (430)
T ss_dssp --CTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECC-----CSSCEEEEEECSSCTTEEEEEETTSEEEEEETT
T ss_pred --CCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecC-----CCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECC
Confidence 55676 999999999999999987432 222333 334899999999 5667764 589999999998
Q ss_pred CCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCC-ceeeEEeeccccCeEEEEEccCCC-EE
Q 014125 203 RPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN-MELLYVLHGQEGGVTHVQFSRDGN-YL 280 (430)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~-~l 280 (430)
..... ........|...|++++|+|++..++++|+.||.|++||+++ ..++..+..|...|.+++|+|+++ +|
T Consensus 263 ~~~~~-----~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l 337 (430)
T 2xyi_A 263 NNNTS-----KPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETIL 337 (430)
T ss_dssp CSCSS-----SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEE
T ss_pred CCCCC-----cceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEE
Confidence 74311 111122467888999999997777899999999999999998 567888888999999999999996 57
Q ss_pred EEEecCCCeEEEEeCCCCceE----------EEEeecccCCccceEEEEEcCCCC-EEEEEccCCcEEEEEcCCC
Q 014125 281 YTGGRKDPYILCWDLRKAVQV----------VYKLYRSSEHTNQRILFDIEPSGR-HLGTGGQDGLVHIYDLQTG 344 (430)
Q Consensus 281 ~~~~~~d~~i~i~d~~~~~~~----------~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~ 344 (430)
++++ .|+.|++||+...... ...+....+|...|.+++|+|++. +|++++.||.|+||++...
T Consensus 338 ~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 338 ASSG-TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp EEEE-TTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred EEEe-CCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 7777 9999999999873210 012233367888999999999998 8999999999999998753
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-33 Score=249.88 Aligned_cols=250 Identities=12% Similarity=0.080 Sum_probs=201.9
Q ss_pred cCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCc---eeeeeecccccccccceEEEEECCCCc-EEEE-E
Q 014125 117 TEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGL---LRCTYRAYDAVDEITAAFSVAFNPTGT-KIFA-G 191 (430)
Q Consensus 117 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~-~ 191 (430)
.|...|.+++| +|++.+|++++.||.|++|++.++. ....+..+. ..|.+++|+|++. +|++ +
T Consensus 9 ~h~~~v~~~~~-------s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~l~~~~ 76 (342)
T 1yfq_A 9 APKDYISDIKI-------IPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYK-----HPLLCCNFIDNTDLQIYVGT 76 (342)
T ss_dssp CCSSCEEEEEE-------EGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECS-----SCEEEEEEEESSSEEEEEEE
T ss_pred CCCCcEEEEEE-------cCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecC-----CceEEEEECCCCCcEEEEEc
Confidence 57789999999 5678999999999999999999887 223333333 3899999999999 7874 5
Q ss_pred cCCeEEEEEc-CCCCCcccccccccCCCCC--CCcceEEEEEcCCCCceEEEecCCCeEEEEEcCC---------ceeeE
Q 014125 192 YNKSVRVFDV-HRPGRDFEKYSTLKGNKEG--QAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN---------MELLY 259 (430)
Q Consensus 192 ~d~~i~v~d~-~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~---------~~~~~ 259 (430)
.|+.|++||+ ..... ....+ |...|.+++|+| +.++++++.|+.|++||+++ ++.+.
T Consensus 77 ~dg~i~~wd~~~~~~~---------~~~~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 145 (342)
T 1yfq_A 77 VQGEILKVDLIGSPSF---------QALTNNEANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSN 145 (342)
T ss_dssp TTSCEEEECSSSSSSE---------EECBSCCCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSS
T ss_pred CCCeEEEEEeccCCce---------EeccccCCCCceEEEEeCC--CCEEEEEcCCCeEEEEcccccccccccccCCeee
Confidence 8999999999 65321 12245 888999999999 66999999999999999988 77676
Q ss_pred EeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCC-CceEEEEeecccCCccceEEEEEcC-CCCEEEEEccCCcEE
Q 014125 260 VLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRK-AVQVVYKLYRSSEHTNQRILFDIEP-SGRHLGTGGQDGLVH 337 (430)
Q Consensus 260 ~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~ 337 (430)
.+. |...|.+++|+|++ +++++ .|+.|++||+++ ........ ...+...+.+++|+| +++++++++.||.|+
T Consensus 146 ~~~-~~~~v~~~~~~~~~--l~~~~-~d~~i~i~d~~~~~~~~~~~~--~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~ 219 (342)
T 1yfq_A 146 NTK-VKNKIFTMDTNSSR--LIVGM-NNSQVQWFRLPLCEDDNGTIE--ESGLKYQIRDVALLPKEQEGYACSSIDGRVA 219 (342)
T ss_dssp SSS-SCCCEEEEEECSSE--EEEEE-STTEEEEEESSCCTTCCCEEE--ECSCSSCEEEEEECSGGGCEEEEEETTSEEE
T ss_pred EEe-eCCceEEEEecCCc--EEEEe-CCCeEEEEECCccccccceee--ecCCCCceeEEEECCCCCCEEEEEecCCcEE
Confidence 666 88999999999987 88888 899999999998 54322121 146778899999999 999999999999999
Q ss_pred EEEcCCC------CeecccccccC---------CeeEEEEcCCCcEEEEeeCCceeeecCCCccccccCCCcEEEEeecc
Q 014125 338 IYDLQTG------KWISGFQAAAD---------TVNGFSFHPFLPMAASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLY 402 (430)
Q Consensus 338 vwd~~~~------~~~~~~~~~~~---------~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~ 402 (430)
+|+++.. +....+..|.. .|.+++|+|++++|++++.| |.|++|++..
T Consensus 220 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----------------g~i~vwd~~~ 282 (342)
T 1yfq_A 220 VEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSD-----------------GIISCWNLQT 282 (342)
T ss_dssp EEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETT-----------------SCEEEEETTT
T ss_pred EEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCC-----------------ceEEEEcCcc
Confidence 9999887 77778887765 99999999999999999854 5555555555
Q ss_pred cccccccCCC
Q 014125 403 ASMMENADGI 412 (430)
Q Consensus 403 ~~~~~~~~~~ 412 (430)
++.+..+.+|
T Consensus 283 ~~~~~~~~~~ 292 (342)
T 1yfq_A 283 RKKIKNFAKF 292 (342)
T ss_dssp TEEEEECCCC
T ss_pred HhHhhhhhcc
Confidence 5555555555
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-32 Score=239.97 Aligned_cols=240 Identities=18% Similarity=0.271 Sum_probs=201.4
Q ss_pred eeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-Ec
Q 014125 114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GY 192 (430)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~ 192 (430)
....|...|.+++| | ++.+|++++.||.|++||+.+++....+..+.. .|.+++|+|++.++++ +.
T Consensus 13 ~l~~h~~~v~~~~~-~-------~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~ 79 (313)
T 3odt_A 13 TLKGHDQDVRDVVA-V-------DDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQG-----FLNSVCYDSEKELLLFGGK 79 (313)
T ss_dssp EECCCSSCEEEEEE-E-------ETTEEEEEETTSEEEEEEESSSEEEEEEEECSS-----CEEEEEEETTTTEEEEEET
T ss_pred HhhCCCCCcEEEEe-c-------CCCEEEEEEcCCcEEEEECCCCEEEEEeecCCc-----cEEEEEECCCCCEEEEecC
Confidence 44567889999998 5 577899999999999999999888888777655 8999999999999995 59
Q ss_pred CCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEE
Q 014125 193 NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQ 272 (430)
Q Consensus 193 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~ 272 (430)
|+.|++|++...... .......+|...|.+++|+ +.++++++.|+.|++|| .++....+..|...+.+++
T Consensus 80 dg~i~~~~~~~~~~~-----~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~ 149 (313)
T 3odt_A 80 DTMINGVPLFATSGE-----DPLYTLIGHQGNVCSLSFQ---DGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAK 149 (313)
T ss_dssp TSCEEEEETTCCTTS-----CC-CEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEE
T ss_pred CCeEEEEEeeecCCC-----CcccchhhcccCEEEEEec---CCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEE
Confidence 999999999764321 1222346788899999994 44899999999999999 6777888888999999999
Q ss_pred Ecc-CCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccc
Q 014125 273 FSR-DGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQ 351 (430)
Q Consensus 273 ~~~-~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 351 (430)
|+| ++..+++++ .|+.|++||... ...... ..+...+.+++|+|++. +++++.||.|++||+++++.+..+.
T Consensus 150 ~~~~~~~~l~~~~-~d~~i~i~d~~~---~~~~~~--~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~ 222 (313)
T 3odt_A 150 VVSFSENKFLTAS-ADKTIKLWQNDK---VIKTFS--GIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYE 222 (313)
T ss_dssp EEETTTTEEEEEE-TTSCEEEEETTE---EEEEEC--SSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EccCCCCEEEEEE-CCCCEEEEecCc---eEEEEe--ccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhh
Confidence 998 899999999 999999999432 222221 33788999999999988 9999999999999999999999999
Q ss_pred cccCCeeEEEEcCCCcEEEEeeCCceeeecCCC
Q 014125 352 AAADTVNGFSFHPFLPMAASSSGHRRFPVDDFE 384 (430)
Q Consensus 352 ~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~ 384 (430)
+|...|.+++|+|++ .|++++.|+.+++|+..
T Consensus 223 ~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~ 254 (313)
T 3odt_A 223 GHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKE 254 (313)
T ss_dssp CCSSCEEEEEECTTS-CEEEEETTSEEEEECTT
T ss_pred cCCceEEEEEEecCC-CEEEEecCCEEEEEECC
Confidence 999999999999999 68888877777777643
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-32 Score=252.41 Aligned_cols=229 Identities=19% Similarity=0.311 Sum_probs=194.2
Q ss_pred cCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-EcCCe
Q 014125 117 TEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKS 195 (430)
Q Consensus 117 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~ 195 (430)
.+...|.++.| ++++|++|+.||.|++||+.+++....+..+.. .|.+++| ++.++++ +.||.
T Consensus 131 ~~~~~v~~~~~---------d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~-----~v~~l~~--~~~~l~sg~~dg~ 194 (435)
T 1p22_A 131 ETSKGVYCLQY---------DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTG-----SVLCLQY--DERVIITGSSDST 194 (435)
T ss_dssp SSCCCEEEEEC---------CSSEEEEEESSSCEEEEESSSCCEEEEECCCSS-----CEEEEEC--CSSEEEEEETTSC
T ss_pred CCCCcEEEEEE---------CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCC-----cEEEEEE--CCCEEEEEcCCCe
Confidence 34567888876 688999999999999999999999888887665 8999998 6778874 58999
Q ss_pred EEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceee---EEeeccccCeEEEE
Q 014125 196 VRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELL---YVLHGQEGGVTHVQ 272 (430)
Q Consensus 196 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~---~~~~~~~~~i~~~~ 272 (430)
|++||+.++. ......+|...|.+++|++ ..+++|+.||.|++||++++... ..+.+|...|.+++
T Consensus 195 i~vwd~~~~~--------~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~ 263 (435)
T 1p22_A 195 VRVWDVNTGE--------MLNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVD 263 (435)
T ss_dssp EEEEESSSCC--------EEEEECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEE
T ss_pred EEEEECCCCc--------EEEEEcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEE
Confidence 9999998742 2222357888999999975 39999999999999999987654 66778999999999
Q ss_pred EccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccccc
Q 014125 273 FSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQA 352 (430)
Q Consensus 273 ~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 352 (430)
| ++++|++++ .||.|++||+++..... .+ ..|...+.+++++ +.++++|+.||.|++||+++++.+..+.+
T Consensus 264 ~--~~~~l~s~~-~dg~i~vwd~~~~~~~~-~~---~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 334 (435)
T 1p22_A 264 F--DDKYIVSAS-GDRTIKVWNTSTCEFVR-TL---NGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEG 334 (435)
T ss_dssp E--ETTEEEEEE-TTSEEEEEETTTCCEEE-EE---ECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred e--CCCEEEEEe-CCCeEEEEECCcCcEEE-EE---cCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeC
Confidence 9 788999999 99999999999875432 22 4688899999984 68999999999999999999999999999
Q ss_pred ccCCeeEEEEcCCCcEEEEeeCCceeeecCC
Q 014125 353 AADTVNGFSFHPFLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 353 ~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~ 383 (430)
|...|.+++| ++.+|++++.||.|++||.
T Consensus 335 h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~ 363 (435)
T 1p22_A 335 HEELVRCIRF--DNKRIVSGAYDGKIKVWDL 363 (435)
T ss_dssp CSSCEEEEEC--CSSEEEEEETTSCEEEEEH
T ss_pred CcCcEEEEEe--cCCEEEEEeCCCcEEEEEC
Confidence 9999999999 7889999998777777753
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-33 Score=253.92 Aligned_cols=272 Identities=11% Similarity=0.076 Sum_probs=204.0
Q ss_pred eecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCc
Q 014125 54 RTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (430)
Q Consensus 54 ~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (430)
..+.+|...|++++|+|+| .++.+.+|+.+.... ....+...|.+++|
T Consensus 46 ~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~~-------------------~~~~~~~~V~~vaw------ 93 (588)
T 2j04_A 46 KDINCNSKNLFHVKEFPLE-------FENKLDFELAQQNGL-------------------LNSQPVCYPRVCKP------ 93 (588)
T ss_dssp SCCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSCS-------------------STTSCSCCEEEEEE------
T ss_pred ceecCCCccEEEEEECCCC-------CcceEEEEeCCCceE-------------------eecCCCCcEEEEEE------
Confidence 3447999999999999999 455555555432211 11123578999999
Q ss_pred cCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCC---ccc
Q 014125 134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGR---DFE 209 (430)
Q Consensus 134 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~---~~~ 209 (430)
||+|..||+++.||.|++||... .+..+. +........+.+++|+|+|++|++ +.||+|++||+..+.. .+.
T Consensus 94 -SPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i 169 (588)
T 2j04_A 94 -SPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFY 169 (588)
T ss_dssp -CSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCE
T ss_pred -CCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccce
Confidence 78999999999999999999544 444444 332112235899999999999995 5899999999987421 001
Q ss_pred ccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCcee---eEEe-eccccCeEEEEEccCCCEEEEEec
Q 014125 210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL---LYVL-HGQEGGVTHVQFSRDGNYLYTGGR 285 (430)
Q Consensus 210 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~---~~~~-~~~~~~i~~~~~~~~~~~l~~~~~ 285 (430)
....+.....+|...|.+++|+|++ +++++.|++|++||+.+++. ...+ .+|...|.+++|+ |+.|++++
T Consensus 170 ~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~- 243 (588)
T 2j04_A 170 FESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC- 243 (588)
T ss_dssp EEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-
T ss_pred eeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-
Confidence 2233333446788999999999954 78888999999999988763 3456 4788899999999 68888886
Q ss_pred CCCeEEEEeCCCCceEEEEeecccCCccceEEEEE--cCCCCEEEEEccCCcEEEEEcCC--------------------
Q 014125 286 KDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDI--EPSGRHLGTGGQDGLVHIYDLQT-------------------- 343 (430)
Q Consensus 286 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~dg~i~vwd~~~-------------------- 343 (430)
++.|++||+.+....... .+|...+..++| +|++..|+++++||. ++|..+.
T Consensus 244 -~~tIkLWd~~~~~~~~~~----~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW 317 (588)
T 2j04_A 244 -PGYVHKIDLKNYSISSLK----TGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKW 317 (588)
T ss_dssp -SSEEEEEETTTTEEEEEE----CSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHT
T ss_pred -CCeEEEEECCCCeEEEEE----cCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEE
Confidence 699999999987443322 268999999999 999999999999999 9998742
Q ss_pred ---CCeecccccccCCeeEEEEcCCCcEEEEeeC
Q 014125 344 ---GKWISGFQAAADTVNGFSFHPFLPMAASSSG 374 (430)
Q Consensus 344 ---~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 374 (430)
+..+..+.+ ...|.+++|+|+|+.+|+++.
T Consensus 318 ~~~g~~l~~~~~-~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 318 STIWNEFNNYET-TLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp TTTTTSSSSSCC-EEEEEEEEECTTSSEEEEEEE
T ss_pred ECCCCceeeecc-ceEEEEEEECCCCCEEEEEEe
Confidence 111222222 446899999999999999875
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-33 Score=275.01 Aligned_cols=251 Identities=14% Similarity=0.166 Sum_probs=207.8
Q ss_pred eecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEecc--CCceeeeeecccccccccceEEEEECCC--CcEEE-
Q 014125 115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDAT--TGLLRCTYRAYDAVDEITAAFSVAFNPT--GTKIF- 189 (430)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~- 189 (430)
..+|.+.|++++| +|++++|++|+.||.|++||+. +++....+..|.. .|.+++|+|+ +.+|+
T Consensus 5 l~gH~~~V~~l~~-------s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~-----~V~~l~~s~~~~~~~l~s 72 (753)
T 3jro_A 5 ANAHNELIHDAVL-------DYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEG-----PVWRVDWAHPKFGTILAS 72 (753)
T ss_dssp ---CCCCEEEECC-------CSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSS-----CEEEEEECCTTSCSEEEE
T ss_pred cccCcceeEEEEE-------CCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcC-----ceEEEEecCCCCCCEEEE
Confidence 4467789999999 7789999999999999999998 4455566665554 9999999988 88888
Q ss_pred EEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCC-CceEEEecCCCeEEEEEcCCc--eeeEEeecccc
Q 014125 190 AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTH-TGMLAIGSYSQTSAIYREDNM--ELLYVLHGQEG 266 (430)
Q Consensus 190 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~~~d~~~~--~~~~~~~~~~~ 266 (430)
++.||.|++||+..+.. .......+|...|++++|+|+. +..+++|+.||.|++||++++ .....+..|..
T Consensus 73 ~s~Dg~I~vwd~~~~~~------~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~ 146 (753)
T 3jro_A 73 CSYDGKVLIWKEENGRW------SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAI 146 (753)
T ss_dssp EETTSCEEEEEEETTEE------EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSS
T ss_pred EeCCCeEEEEECCCCcc------cccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCC
Confidence 55899999999976321 1222336788899999999942 789999999999999999887 34556678999
Q ss_pred CeEEEEEcc-------------CCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCC---CCEEEEE
Q 014125 267 GVTHVQFSR-------------DGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPS---GRHLGTG 330 (430)
Q Consensus 267 ~i~~~~~~~-------------~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~ 330 (430)
.|.+++|+| ++..+++++ .||.|++||+++.............|...|.+++|+|+ +.+|++|
T Consensus 147 ~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~ 225 (753)
T 3jro_A 147 GVNSASWAPATIEEDGEHNGTKESRKFVTGG-ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASV 225 (753)
T ss_dssp CEEEEEECCCC---------CGGGCCEEEEE-TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEE
T ss_pred ceEEEEecCcccccccccccCCCCCEEEEEE-CCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEE
Confidence 999999999 589999999 99999999998875443344444688999999999999 8999999
Q ss_pred ccCCcEEEEEcCCCC-----eecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCCC
Q 014125 331 GQDGLVHIYDLQTGK-----WISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFE 384 (430)
Q Consensus 331 ~~dg~i~vwd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~ 384 (430)
+.||.|++||+.+++ .+.....|...|++++|+|++++|++++.||.|++|+..
T Consensus 226 s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~ 284 (753)
T 3jro_A 226 SQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (753)
T ss_dssp ESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCC
T ss_pred ecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecC
Confidence 999999999999874 344455688899999999999999999999999999765
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-32 Score=248.90 Aligned_cols=280 Identities=14% Similarity=0.149 Sum_probs=217.7
Q ss_pred CceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCce
Q 014125 61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV 140 (430)
Q Consensus 61 ~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (430)
..+.+++|+|++.++++++.|+.|++||+.+++....... .....|...|.+++| ++++.+
T Consensus 123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~------------~~~~~~~~~v~~~~~-------~~~~~~ 183 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPP------------EKYKKKLGFVETISI-------PEHNEL 183 (433)
T ss_dssp SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCC------------HHHHTTCCEEEEEEE-------GGGTEE
T ss_pred CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCc------------ccccccCCceeEEEE-------cCCCEE
Confidence 4466999999888889999999999999987654321110 012345678999999 567899
Q ss_pred EEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCCcccccccccCCC
Q 014125 141 FASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYSTLKGNK 218 (430)
Q Consensus 141 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~ 218 (430)
+++++.|+.|++||+.+++.+..+..+.. .+.+++|+|++..++ ++ .++.|++||++.... ...+
T Consensus 184 ~~s~~~d~~v~~~d~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~----~~~~---- 250 (433)
T 3bws_A 184 WVSQMQANAVHVFDLKTLAYKATVDLTGK-----WSKILLYDPIRDLVYCSNWISEDISVIDRKTKLE----IRKT---- 250 (433)
T ss_dssp EEEEGGGTEEEEEETTTCCEEEEEECSSS-----SEEEEEEETTTTEEEEEETTTTEEEEEETTTTEE----EEEC----
T ss_pred EEEECCCCEEEEEECCCceEEEEEcCCCC-----CeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcE----EEEe----
Confidence 99999999999999999988888775554 789999999999886 55 689999999976321 1111
Q ss_pred CCCCcceEEEEEcCCCCceEEEec--------CCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeE
Q 014125 219 EGQAGIMSAIAFSPTHTGMLAIGS--------YSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYI 290 (430)
Q Consensus 219 ~~~~~~v~~~~~~~~~~~~l~~~~--------~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i 290 (430)
. ....+.+++|+| ++..+++++ .|+.|++||+++++....+. |...+.+++|+|+++.+++++..|+.|
T Consensus 251 ~-~~~~~~~~~~~~-~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v 327 (433)
T 3bws_A 251 D-KIGLPRGLLLSK-DGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDMCCSKI 327 (433)
T ss_dssp C-CCSEEEEEEECT-TSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEETTTTEE
T ss_pred c-CCCCceEEEEcC-CCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEEecCCCEE
Confidence 1 234589999999 555666666 58899999999988776664 667899999999998776665489999
Q ss_pred EEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEcc---------------CCcEEEEEcCCCCeecccccccC
Q 014125 291 LCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQ---------------DGLVHIYDLQTGKWISGFQAAAD 355 (430)
Q Consensus 291 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------------dg~i~vwd~~~~~~~~~~~~~~~ 355 (430)
++||+.+.... ..+ .+...+.+++|+|+|++|++++. ||.|++||+.+++.+..+.. ..
T Consensus 328 ~v~d~~~~~~~-~~~----~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~ 401 (433)
T 3bws_A 328 EVYDLKEKKVQ-KSI----PVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GN 401 (433)
T ss_dssp EEEETTTTEEE-EEE----ECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SS
T ss_pred EEEECCCCcEE-EEe----cCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CC
Confidence 99999976433 222 25567899999999999888876 57999999999998888875 45
Q ss_pred CeeEEEEcCCCcEEEEeeC-Cceeeec
Q 014125 356 TVNGFSFHPFLPMAASSSG-HRRFPVD 381 (430)
Q Consensus 356 ~v~~~~~~~~~~~l~s~~~-d~~~~vw 381 (430)
.+.+++|+|++++|++++. |+.+++|
T Consensus 402 ~~~~~~~s~dg~~l~~~~~~d~~i~v~ 428 (433)
T 3bws_A 402 QPTGLDVSPDNRYLVISDFLDHQIRVY 428 (433)
T ss_dssp SEEEEEECTTSCEEEEEETTTTEEEEE
T ss_pred CCceEEEcCCCCEEEEEECCCCeEEEE
Confidence 7899999999999988764 4444444
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-32 Score=247.81 Aligned_cols=293 Identities=16% Similarity=0.188 Sum_probs=199.1
Q ss_pred ccCCCceeEEEECc-CCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccC
Q 014125 57 SIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASD 135 (430)
Q Consensus 57 ~~h~~~v~~~~~sp-~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 135 (430)
.+|...|++++|+| ++++|++++.||.|++||+.+++.. ....+...+.+++|.|. +
T Consensus 96 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~------------------~~~~~~~~~~~~~~~~~----~ 153 (408)
T 4a11_B 96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTA------------------DVFNFEETVYSHHMSPV----S 153 (408)
T ss_dssp TCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEE------------------EEEECSSCEEEEEECSS----C
T ss_pred ccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccc------------------eeccCCCceeeeEeecC----C
Confidence 46999999999999 7889999999999999999865321 23335578899999775 5
Q ss_pred CCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCc-EEE-EEcCCeEEEEEcCCCCCccccc--
Q 014125 136 PTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGT-KIF-AGYNKSVRVFDVHRPGRDFEKY-- 211 (430)
Q Consensus 136 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~-~~~d~~i~v~d~~~~~~~~~~~-- 211 (430)
+++.++++++.||.|++||+.+++....+..+.. .|.+++|+|++. +++ ++.|+.|++||++.........
T Consensus 154 ~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~ 228 (408)
T 4a11_B 154 TKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQ-----EILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQ 228 (408)
T ss_dssp SSCCEEEEEESSSSEEEEESSSSCCCEEECCCCS-----CEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCT
T ss_pred CCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCC-----cEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccc
Confidence 5777999999999999999999988888876655 899999999998 465 5589999999998754332221
Q ss_pred ------ccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccc-----cCeEEEEEccCCCEE
Q 014125 212 ------STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE-----GGVTHVQFSRDGNYL 280 (430)
Q Consensus 212 ------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~l 280 (430)
.........|...|.+++|+| ++.+|++++.||.|++||+++++....+..+. ..+........+..+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (408)
T 4a11_B 229 HNGKKSQAVESANTAHNGKVNGLCFTS-DGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEF 307 (408)
T ss_dssp TTTCSCCCTTTSSCSCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCE
T ss_pred cccccceeeccccccccCceeEEEEcC-CCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceE
Confidence 112223357888999999999 67799999999999999999887654443221 122222223334556
Q ss_pred EEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEE
Q 014125 281 YTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGF 360 (430)
Q Consensus 281 ~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~ 360 (430)
++++ .++.|++||+.+..... .+ .+|...|.+++|+|++++|++|+.||.|++||+.+++.+.....+.. ..
T Consensus 308 ~~~~-~~~~i~v~d~~~~~~~~-~~---~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~---~~ 379 (408)
T 4a11_B 308 VFVP-YGSTIAVYTVYSGEQIT-ML---KGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTT---KS 379 (408)
T ss_dssp EEEE-ETTEEEEEETTTCCEEE-EE---CCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-----------------
T ss_pred EEEe-cCCEEEEEECcCCccee-ee---ccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEe---cc
Confidence 6666 79999999999875442 32 57889999999999999999999999999999999988765553332 22
Q ss_pred EEcC-CCcEEEEeeCCceeeecCCCc
Q 014125 361 SFHP-FLPMAASSSGHRRFPVDDFED 385 (430)
Q Consensus 361 ~~~~-~~~~l~s~~~d~~~~vw~~~~ 385 (430)
.+.| ....+.+++.++.+++|+...
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 380 QLNPAFEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp --------------------------
T ss_pred ccccccceeecccCccCceeecCCcc
Confidence 3333 334556677899999997654
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-33 Score=254.57 Aligned_cols=261 Identities=20% Similarity=0.288 Sum_probs=204.4
Q ss_pred ceeecccCCCceeEEEECc-CCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccc
Q 014125 52 QFRTSSIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH 130 (430)
Q Consensus 52 ~~~~~~~h~~~v~~~~~sp-~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 130 (430)
....+.+|.+.|++++|+| ++++|++|+.||.|+|||+.++....... ........|...|.+++|
T Consensus 73 ~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~----------~~~~~~~~h~~~v~~~~~--- 139 (402)
T 2aq5_A 73 NVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLR----------EPVITLEGHTKRVGIVAW--- 139 (402)
T ss_dssp TCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBC----------SCSEEEECCSSCEEEEEE---
T ss_pred CCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccC----------CceEEecCCCCeEEEEEE---
Confidence 4456789999999999999 99999999999999999998764322111 122234567789999999
Q ss_pred cCccCCCC-ceEEEEeCCCcEEEEeccCCceeeee--ecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCC
Q 014125 131 MSASDPTS-CVFASTTRDHPIHLWDATTGLLRCTY--RAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGR 206 (430)
Q Consensus 131 ~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~ 206 (430)
+|++ .+|++++.||.|++||+.+++.+..+ ..+.. .|.+++|+|++.+|++ +.|+.|++||++....
T Consensus 140 ----~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 210 (402)
T 2aq5_A 140 ----HPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPD-----TIYSVDWSRDGALICTSCRDKRVRVIEPRKGTV 210 (402)
T ss_dssp ----CSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCS-----CEEEEEECTTSSCEEEEETTSEEEEEETTTTEE
T ss_pred ----CcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCC-----ceEEEEECCCCCEEEEEecCCcEEEEeCCCCce
Confidence 6677 69999999999999999999888877 44444 8999999999998885 5899999999987321
Q ss_pred cccccccccCCC-CCCCcc-eEEEEEcCCCCceEEEe---cCCCeEEEEEcCCcee-eEEee-ccccCeEEEEEccCCCE
Q 014125 207 DFEKYSTLKGNK-EGQAGI-MSAIAFSPTHTGMLAIG---SYSQTSAIYREDNMEL-LYVLH-GQEGGVTHVQFSRDGNY 279 (430)
Q Consensus 207 ~~~~~~~~~~~~-~~~~~~-v~~~~~~~~~~~~l~~~---~~dg~v~~~d~~~~~~-~~~~~-~~~~~i~~~~~~~~~~~ 279 (430)
.... ..|... +.++.|+| ++.+|++| +.|+.|++||+++++. ..... .|...+.+++|+|++++
T Consensus 211 --------~~~~~~~~~~~~~~~~~~~~-~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 281 (402)
T 2aq5_A 211 --------VAEKDRPHEGTRPVHAVFVS-EGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNI 281 (402)
T ss_dssp --------EEEEECSSCSSSCCEEEECS-TTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTE
T ss_pred --------eeeeccCCCCCcceEEEEcC-CCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCE
Confidence 1111 344444 88999999 67789988 7999999999998654 32322 46778999999999999
Q ss_pred EEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCe
Q 014125 280 LYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKW 346 (430)
Q Consensus 280 l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 346 (430)
|++++..|+.|++||+.+.......+.. ..+...+.+++|+|++.++++ .++.+++|++.+++.
T Consensus 282 l~~~g~~dg~i~i~d~~~~~~~~~~l~~-~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 282 VYLCGKGDSSIRYFEITSEAPFLHYLSM-FSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKC 345 (402)
T ss_dssp EEEEETTCSCEEEEEECSSTTCEEEEEE-ECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred EEEEEcCCCeEEEEEecCCCcceEeecc-cccCCcccceEEeccccccee--cceeEEEEEcCCCcE
Confidence 9876647999999999987642323322 236788999999999988764 566899999987643
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-31 Score=233.56 Aligned_cols=251 Identities=15% Similarity=0.288 Sum_probs=199.2
Q ss_pred ecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCcc
Q 014125 55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS 134 (430)
Q Consensus 55 ~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 134 (430)
.+.+|...|++++|+|++++||+|+.||+|++|++.+++... ....|...+.++.+
T Consensus 62 ~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~-----------------~~~~h~~~~~~~~~------- 117 (318)
T 4ggc_A 62 QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR-----------------NMTSHSARVGSLSW------- 117 (318)
T ss_dssp ECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-----------------EEECCSSCEEEEEE-------
T ss_pred EecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEE-----------------EecCccceEEEeec-------
Confidence 356788999999999999999999999999999998764332 22334456666555
Q ss_pred CCCCceEEEEeCCCcEEEEeccCCc-eeeeeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCCcccccc
Q 014125 135 DPTSCVFASTTRDHPIHLWDATTGL-LRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFEKYS 212 (430)
Q Consensus 135 ~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~~~~~ 212 (430)
++..+++++.++.+++|+...+. .+..+..+.. .+..+.+++++.++++ +.|+.|++||++.......
T Consensus 118 --~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~--- 187 (318)
T 4ggc_A 118 --NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQ-----EVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV--- 187 (318)
T ss_dssp --ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSS-----CEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSC---
T ss_pred --CCCEEEEEecCCceEeeecCCCceeEEEEcCccC-----ceEEEEEcCCCCEEEEEecCcceeEEECCCCccccc---
Confidence 56699999999999999988764 3444555444 8899999999999985 5899999999987433221
Q ss_pred cccCCCCCCCcceEEEEEcCCCCceE--EEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEe-cCCCe
Q 014125 213 TLKGNKEGQAGIMSAIAFSPTHTGML--AIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGG-RKDPY 289 (430)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~~~~~~~~l--~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~d~~ 289 (430)
.......+...|.++.++|++..++ ++++.+++|++||.+......... +...+..+.|+|++..+++++ ..|+.
T Consensus 188 -~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~~d~~ 265 (318)
T 4ggc_A 188 -PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQ 265 (318)
T ss_dssp -CSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCC
T ss_pred -ceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecccccceEEEEEcCCCE
Confidence 1222345667899999999777665 456788999999999887766554 677899999999999887654 36899
Q ss_pred EEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCC
Q 014125 290 ILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGK 345 (430)
Q Consensus 290 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 345 (430)
|++||++++.... .+ .+|...|++++|+|+|++|++|+.||+|+|||+.+..
T Consensus 266 i~iwd~~~~~~~~-~l---~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 266 LVIWKYPTMAKVA-EL---KGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp EEEEETTTCCEEE-EE---CCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred EEEEECCCCcEEE-EE---cCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 9999999875432 33 6799999999999999999999999999999997654
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-31 Score=238.09 Aligned_cols=265 Identities=14% Similarity=0.169 Sum_probs=206.8
Q ss_pred ceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceE-EEEeCCCcEE
Q 014125 73 SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF-ASTTRDHPIH 151 (430)
Q Consensus 73 ~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~ 151 (430)
.++++++.|+.|++||+.+++... .+.+...+.+++| +|+++.+ ++++.|+.|+
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~------------------~~~~~~~~~~~~~-------s~dg~~l~~~~~~d~~i~ 57 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTA------------------TIPVGSNPMGAVI-------SPDGTKVYVANAHSNDVS 57 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEE------------------EEECSSSEEEEEE-------CTTSSEEEEEEGGGTEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEE------------------EeecCCCcceEEE-------CCCCCEEEEECCCCCeEE
Confidence 468899999999999998764321 2223345889999 7788876 6777999999
Q ss_pred EEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEE
Q 014125 152 LWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIA 229 (430)
Q Consensus 152 vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 229 (430)
+||+.+++.+..+..+. .+.+++|+|++++|+ ++ .++.|++||+...... ... . +...+.+++
T Consensus 58 v~d~~~~~~~~~~~~~~------~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~----~~~----~-~~~~~~~~~ 122 (391)
T 1l0q_A 58 IIDTATNNVIATVPAGS------SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVA----GTV----K-TGKSPLGLA 122 (391)
T ss_dssp EEETTTTEEEEEEECSS------SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE----EEE----E-CSSSEEEEE
T ss_pred EEECCCCeEEEEEECCC------CccceEECCCCCEEEEEECCCCEEEEEECCCCeEE----EEE----e-CCCCcceEE
Confidence 99999999888776544 788999999999886 55 5799999999864211 111 1 234589999
Q ss_pred EcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeeccc
Q 014125 230 FSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSS 309 (430)
Q Consensus 230 ~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 309 (430)
|+|++..++++++.++.|++||+.+++....+..+ ..+.+++|+|++++|++++..++.|++||+++..... ..
T Consensus 123 ~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~-~~---- 196 (391)
T 1l0q_A 123 LSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVID-TV---- 196 (391)
T ss_dssp ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE-EE----
T ss_pred ECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEE-EE----
Confidence 99966556688999999999999999988888755 5679999999999886555489999999999874332 22
Q ss_pred CCccceEEEEEcCCCCEEEEEc---cCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEE-EEeeCCceeeecCCC
Q 014125 310 EHTNQRILFDIEPSGRHLGTGG---QDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMA-ASSSGHRRFPVDDFE 384 (430)
Q Consensus 310 ~~~~~v~~~~~~~~~~~l~~~~---~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~d~~~~vw~~~ 384 (430)
.+...+.+++|+|++++|++++ .++.|++||+.+++.+..+..|. .+.+++|+|++++| ++++.|+.+++||..
T Consensus 197 ~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~ 274 (391)
T 1l0q_A 197 KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTA 274 (391)
T ss_dssp ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred ecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECC
Confidence 2456788999999999999888 68999999999999888887664 57899999999977 555656666666543
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-32 Score=229.48 Aligned_cols=262 Identities=14% Similarity=0.124 Sum_probs=169.8
Q ss_pred eeEEEECcCCc---eEEEecCCCeEEEEeCCCC---CCcccccccccccccCcccceeeecCCCeeeeeeeccc------
Q 014125 63 LKGIKWSPDGS---SFLTSSEDKTLRIFSLPEN---GISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH------ 130 (430)
Q Consensus 63 v~~~~~sp~~~---~l~s~~~dg~v~iw~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------ 130 (430)
+.++.|-..|- .+++++.. .|++|+..+. +.... ...|..+|..+.+.|.
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~-~v~lw~~~~~~~~~~~~~-----------------~~~~~~~v~~~~~~~~~~~~~~ 103 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITACED-VVSLWKALDAWQWEKLYT-----------------WHFAEVPVLQIVPVPDVYNLVC 103 (356)
T ss_dssp EEEEEEC----CEEEEEEEESS-EEEEEEESSSSBEEEEEE-----------------EECCSSCEEEECCCTTCCSCEE
T ss_pred EeeeeeccCCCCccEEEEeccc-eEEEcccCCCccceeeEE-----------------EeccCceeEEEEEcCcccceee
Confidence 55666755443 77888875 8999999876 22222 2223345555555441
Q ss_pred ------------cCccCCC----CceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE---
Q 014125 131 ------------MSASDPT----SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG--- 191 (430)
Q Consensus 131 ------------~~~~~~~----~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--- 191 (430)
..+++|+ +..+++++.+ +.+|++.+ ++++.++
T Consensus 104 ~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~~---------------------------g~lv~ss~~g 154 (356)
T 2w18_A 104 VALGNLEIREIRALFCSSDDESEKQVLLKSGNI--KAVLGLTK---------------------------RRLVSSSGTL 154 (356)
T ss_dssp EEECSSSEEEEEEECC------CCEEEEEEEEE--EEEEEETT---------------------------TEEEEEESSS
T ss_pred eeeccccccceEEEEECCCccccccEEEeCCCe--EEEEecCC---------------------------CcEEEecccC
Confidence 1223666 6667766533 55565433 3444443
Q ss_pred cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcC--CCCceEEEecCCCeEEEEEcCCceeeEEeeccc---c
Q 014125 192 YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSP--THTGMLAIGSYSQTSAIYREDNMELLYVLHGQE---G 266 (430)
Q Consensus 192 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~---~ 266 (430)
.|+.|++|++...+.... ....|...++.++|+| .++.+|++++.|++|++||+++++.+..+.+|. .
T Consensus 155 ~d~~V~~~~~s~dG~~~~-------s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~ 227 (356)
T 2w18_A 155 SDQQVEVMTFAEDGGGKE-------NQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQA 227 (356)
T ss_dssp TTCEEEEEEECTTSCEEE-------EEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---C
T ss_pred CCCcEEEEEECCCCceee-------eeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCccee
Confidence 366666666644322111 1134455566666666 456799999999999999999999999998654 3
Q ss_pred CeEEEEEccCCCEE------------EEEecCCCeEEEEeCCCCceEEEEeec-ccCCccceEEEEEcCCCCEEEEEccC
Q 014125 267 GVTHVQFSRDGNYL------------YTGGRKDPYILCWDLRKAVQVVYKLYR-SSEHTNQRILFDIEPSGRHLGTGGQD 333 (430)
Q Consensus 267 ~i~~~~~~~~~~~l------------~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d 333 (430)
.+.+++|+|+|.++ ++++ .|++|++||..++......... ..+|...+.+..++ +.++++|+.|
T Consensus 228 ~v~~vafSpdG~~lvs~s~~~~~w~laSGs-~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~D 304 (356)
T 2w18_A 228 SVCHKAYSEMGLLFIVLSHPCAKESESLRS-PVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTS 304 (356)
T ss_dssp CCEEEEEEETTEEEEEEC-------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETT
T ss_pred eeEEEEECCCCCEEEEeccCCCcceeeccC-CCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCC
Confidence 67788999999877 3455 8999999999987544222111 23555555444444 7899999999
Q ss_pred CcEEEEEcCCCCeecccccccCCee-EEEEcCCCcEEEEeeCCceeeec
Q 014125 334 GLVHIYDLQTGKWISGFQAAADTVN-GFSFHPFLPMAASSSGHRRFPVD 381 (430)
Q Consensus 334 g~i~vwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~s~~~d~~~~vw 381 (430)
++|+|||+.+++.+.++.+|...+. .++|+|+|++|++|+.|++|+||
T Consensus 305 gTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklW 353 (356)
T 2w18_A 305 GTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVY 353 (356)
T ss_dssp SCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEE
T ss_pred CcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEe
Confidence 9999999999999999999988655 58999999999999865444444
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=244.50 Aligned_cols=233 Identities=10% Similarity=0.008 Sum_probs=181.1
Q ss_pred CCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcc--cccc
Q 014125 135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDF--EKYS 212 (430)
Q Consensus 135 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~--~~~~ 212 (430)
.+++.+|++|+.||.|++||+.+++.+..+.. ..|.++.|+|+ ++.++.|+.|++|+.......+ ....
T Consensus 45 ~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~-------~~v~~~~~~~~--~~s~s~D~~i~~w~~~~~~~~~~~~~~~ 115 (343)
T 3lrv_A 45 YYDKWVCMCRCEDGALHFTQLKDSKTITTITT-------PNPRTGGEHPA--IISRGPCNRLLLLYPGNQITILDSKTNK 115 (343)
T ss_dssp SEEEEEEEEEEETTEEEEEEESSSSCEEEEEE-------ECCCTTCCCCS--EEEECSTTEEEEEETTTEEEEEETTTCC
T ss_pred cCCCCEEEEECCCCcEEEEECCCCcEEEEEec-------CCceeeeeCCc--eEEecCCCeEEEEEccCceEEeecCCcc
Confidence 56788999999999999999999988877761 26778889888 4446699999999876421000 0001
Q ss_pred cccCCCCCCCcceEEEEEcC--CCCceEEEecCCCeEEEEEcCCceeeEEee-ccccCeEEEEEccCCCEEEEEecCCCe
Q 014125 213 TLKGNKEGQAGIMSAIAFSP--THTGMLAIGSYSQTSAIYREDNMELLYVLH-GQEGGVTHVQFSRDGNYLYTGGRKDPY 289 (430)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~d~~ 289 (430)
.+.....+|...|.+++|+| + +.++++++.||+|++||+++++...... .+...+++++|+|++.+|++++ .||.
T Consensus 116 ~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~-~dg~ 193 (343)
T 3lrv_A 116 VLREIEVDSANEIIYMYGHNEVN-TEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYS-PDGI 193 (343)
T ss_dssp EEEEEECCCSSCEEEEECCC----CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEEC-TTSC
T ss_pred eeEEeecCCCCCEEEEEcCCCCC-CCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEc-CCCE
Confidence 11122245667899999999 5 4589999999999999999998876653 3455899999999999999999 9999
Q ss_pred EEEEeCCCCceEEEEeecccC-CccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccccc---ccCCee--EEEEc
Q 014125 290 ILCWDLRKAVQVVYKLYRSSE-HTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQA---AADTVN--GFSFH 363 (430)
Q Consensus 290 i~i~d~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---~~~~v~--~~~~~ 363 (430)
|++||++++......+ .. |...|.+++|+|+|.+|++++ |+.|++||+++++.+..+.. |...+. +++|+
T Consensus 194 i~iwd~~~~~~~~~~~---~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (343)
T 3lrv_A 194 LDVYNLSSPDQASSRF---PVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDID 269 (343)
T ss_dssp EEEEESSCTTSCCEEC---CCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEEC
T ss_pred EEEEECCCCCCCccEE---eccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEEC
Confidence 9999999886542232 34 889999999999999999999 45999999999887666554 444454 59999
Q ss_pred CCCcEEEEeeC-CceeeecC
Q 014125 364 PFLPMAASSSG-HRRFPVDD 382 (430)
Q Consensus 364 ~~~~~l~s~~~-d~~~~vw~ 382 (430)
|++++|++++. |+.++||+
T Consensus 270 ~~g~~l~~~s~~d~~i~v~~ 289 (343)
T 3lrv_A 270 DSGKNMIAYSNESNSLTIYK 289 (343)
T ss_dssp TTSSEEEEEETTTTEEEEEE
T ss_pred CCCCEEEEecCCCCcEEEEE
Confidence 99999999998 88888883
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-31 Score=242.30 Aligned_cols=244 Identities=14% Similarity=0.084 Sum_probs=194.2
Q ss_pred CeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCc---eeeeeecccc---------------------------
Q 014125 120 ESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGL---LRCTYRAYDA--------------------------- 169 (430)
Q Consensus 120 ~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~--------------------------- 169 (430)
.++.+++| +++|++|+++ .++.|++||+.+++ .+..+..+..
T Consensus 5 ~p~~~v~~-------s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (450)
T 2vdu_B 5 HPLQNLLT-------SRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKL 76 (450)
T ss_dssp CCCCEEEE-------CSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------
T ss_pred ccEEEEEe-------cCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhcccccccccccccc
Confidence 47888888 7789866555 57889999999998 5555543221
Q ss_pred ----------------------cccccceEEEEECCCCcEE-EEE-cCCeEEEEEcC--CCCCcccccccccCCCCCCCc
Q 014125 170 ----------------------VDEITAAFSVAFNPTGTKI-FAG-YNKSVRVFDVH--RPGRDFEKYSTLKGNKEGQAG 223 (430)
Q Consensus 170 ----------------------~~~~~~v~~~~~~~~~~~l-~~~-~d~~i~v~d~~--~~~~~~~~~~~~~~~~~~~~~ 223 (430)
..+...|.+++|+|++++| +++ .|+.|++||+. .+ .....+ . ...+..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~-~~~~~~---~--~~~~~~ 150 (450)
T 2vdu_B 77 KSNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSK-NVLKLR---K--RFCFSK 150 (450)
T ss_dssp -----------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSS-SCEEEE---E--EEECSS
T ss_pred ccCcCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCC-ceeeee---e--cccCCC
Confidence 0122269999999999996 555 89999999997 42 111111 1 024557
Q ss_pred ceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeE----EeeccccCeEEEEEccC---CCEEEEEecCCCeEEEEeCC
Q 014125 224 IMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLY----VLHGQEGGVTHVQFSRD---GNYLYTGGRKDPYILCWDLR 296 (430)
Q Consensus 224 ~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~----~~~~~~~~i~~~~~~~~---~~~l~~~~~~d~~i~i~d~~ 296 (430)
.|.+++|+| ++.+|++|+.+|.|++|++.+++... .+.+|...|++++|+|+ +++|++++ .|+.|++||++
T Consensus 151 ~v~~~~~sp-~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~-~d~~i~vwd~~ 228 (450)
T 2vdu_B 151 RPNAISIAE-DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSD-RDEHIKISHYP 228 (450)
T ss_dssp CEEEEEECT-TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEE-TTSCEEEEEES
T ss_pred CceEEEEcC-CCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEc-CCCcEEEEECC
Confidence 799999999 66799999999999999998876544 77789999999999999 99999999 99999999999
Q ss_pred CCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccc-----------------------
Q 014125 297 KAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAA----------------------- 353 (430)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~----------------------- 353 (430)
+........ .+|...|.+++|+ ++++|++++.|+.|++||+.+++.+..+..+
T Consensus 229 ~~~~~~~~~---~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (450)
T 2vdu_B 229 QCFIVDKWL---FGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENND 304 (450)
T ss_dssp CTTCEEEEC---CCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------
T ss_pred CCceeeeee---cCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccc
Confidence 875443222 4788999999999 9999999999999999999999987777532
Q ss_pred --cCCeeEEEEcCCCcEEEEee-CCceeeecCC
Q 014125 354 --ADTVNGFSFHPFLPMAASSS-GHRRFPVDDF 383 (430)
Q Consensus 354 --~~~v~~~~~~~~~~~l~s~~-~d~~~~vw~~ 383 (430)
...|.+++|+|++++|++++ .++.|++|+.
T Consensus 305 ~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 305 IIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred cceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 34689999999999999998 7777777766
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-30 Score=236.22 Aligned_cols=269 Identities=12% Similarity=0.042 Sum_probs=204.5
Q ss_pred CCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEE
Q 014125 119 GESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVR 197 (430)
Q Consensus 119 ~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~ 197 (430)
...+.+++| +|++.++++++.++.|++||+.+++............+...+.+++|+|++.+++++ .|+.|+
T Consensus 122 ~~~~~~~~~-------s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~ 194 (433)
T 3bws_A 122 GFQPKSVRF-------IDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVH 194 (433)
T ss_dssp SSCBCCCEE-------SSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEE
T ss_pred CCCceEEEE-------eCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEE
Confidence 345667888 667788888889999999999999887644332222344589999999999988866 789999
Q ss_pred EEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCC
Q 014125 198 VFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDG 277 (430)
Q Consensus 198 v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 277 (430)
+||++.... ......|...+.+++|+|++..++++++.++.|++||+++++.+..+..+ ..+.+++|+|++
T Consensus 195 ~~d~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g 265 (433)
T 3bws_A 195 VFDLKTLAY--------KATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDG 265 (433)
T ss_dssp EEETTTCCE--------EEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTS
T ss_pred EEECCCceE--------EEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCC
Confidence 999976321 11123566789999999966656677778999999999999888887754 568999999999
Q ss_pred CEEEEEec-------CCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCE-EEEEccCCcEEEEEcCCCCeecc
Q 014125 278 NYLYTGGR-------KDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRH-LGTGGQDGLVHIYDLQTGKWISG 349 (430)
Q Consensus 278 ~~l~~~~~-------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~ 349 (430)
++|++++. .|+.|++||++++.... .. .+...+..++|+|+++. +++++.|+.|++||+.+++.+..
T Consensus 266 ~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~-~~----~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~ 340 (433)
T 3bws_A 266 KELYIAQFSASNQESGGGRLGIYSMDKEKLID-TI----GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKS 340 (433)
T ss_dssp SEEEEEEEESCTTCSCCEEEEEEETTTTEEEE-EE----EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CEEEEEECCCCccccCCCeEEEEECCCCcEEe-ec----cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEE
Confidence 99998873 37899999999874332 22 34457889999999975 46678999999999999988877
Q ss_pred cccccCCeeEEEEcCCCcEEEEeeCCceeeecCCCccccccCCCcEEEEeecccccccccCC
Q 014125 350 FQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYASMMENADG 411 (430)
Q Consensus 350 ~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~ 411 (430)
+. +...+.+++|+|++++|++++.+..-. ....+++++.||.|++|+...++.+..+.+
T Consensus 341 ~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~--~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~ 399 (433)
T 3bws_A 341 IP-VFDKPNTIALSPDGKYLYVSCRGPNHP--TEGYLKKGLVLGKVYVIDTTTDTVKEFWEA 399 (433)
T ss_dssp EE-CSSSEEEEEECTTSSEEEEEECCCCCT--TTCTTSCCSSCCEEEEEETTTTEEEEEEEC
T ss_pred ec-CCCCCCeEEEcCCCCEEEEEecCCCcc--ccccccccccceEEEEEECCCCcEEEEecC
Confidence 76 677899999999999888887642110 233456666777777777776665555443
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-29 Score=228.00 Aligned_cols=304 Identities=14% Similarity=0.164 Sum_probs=220.3
Q ss_pred ecccCCCceeEEEECcCCceE-EEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCc
Q 014125 55 TSSIPNNFLKGIKWSPDGSSF-LTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (430)
Q Consensus 55 ~~~~h~~~v~~~~~sp~~~~l-~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (430)
.+.+|. .+.+++|+|+|++| ++++.|+.|++||+.+++.. ..+.....+.+++|
T Consensus 27 ~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~------------------~~~~~~~~v~~~~~------ 81 (391)
T 1l0q_A 27 TIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVI------------------ATVPAGSSPQGVAV------ 81 (391)
T ss_dssp EEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEE------------------EEEECSSSEEEEEE------
T ss_pred EeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEE------------------EEEECCCCccceEE------
Confidence 445554 48999999999976 67779999999999866432 22223348899999
Q ss_pred cCCCCceEE-EEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCCcccc
Q 014125 134 SDPTSCVFA-STTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEK 210 (430)
Q Consensus 134 ~~~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~~~ 210 (430)
+|++++|+ +++.++.|++||+.+++.+..+..+. .+.+++|+|+++.++ ++ .++.|++||+.....
T Consensus 82 -spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~------~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~---- 150 (391)
T 1l0q_A 82 -SPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK------SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAV---- 150 (391)
T ss_dssp -CTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS------SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE----
T ss_pred -CCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCC------CcceEEECCCCCEEEEEeCCCCEEEEEECCCCcE----
Confidence 77888775 45567999999999998887776543 678999999999874 55 689999999976321
Q ss_pred cccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEec--CCC
Q 014125 211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGR--KDP 288 (430)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--~d~ 288 (430)
...+ .. ...+.+++|+|++..++++++.++.|++||+++++....+. +...+.+++|+|++++|++++. .++
T Consensus 151 ~~~~----~~-~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~ 224 (391)
T 1l0q_A 151 INTV----SV-GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFN 224 (391)
T ss_dssp EEEE----EC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCC
T ss_pred EEEE----ec-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCC
Confidence 1111 12 23468999999666566788899999999999998887776 5567899999999999999884 589
Q ss_pred eEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEE-EEEccCCcEEEEEcCCCCeecccccccCCe---eEEEEcC
Q 014125 289 YILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHL-GTGGQDGLVHIYDLQTGKWISGFQAAADTV---NGFSFHP 364 (430)
Q Consensus 289 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v---~~~~~~~ 364 (430)
.|++||+++.... ..+ .. ...+.+++|+|+|++| ++++.|+.|++||+.+++.+..+..|..+. ..+.+.|
T Consensus 225 ~v~~~d~~~~~~~-~~~---~~-~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (391)
T 1l0q_A 225 TVSMIDTGTNKIT-ARI---PV-GPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIP 299 (391)
T ss_dssp EEEEEETTTTEEE-EEE---EC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECS
T ss_pred cEEEEECCCCeEE-EEE---ec-CCCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeeccc
Confidence 9999999987433 222 12 2357889999999887 677889999999999999988887776543 2355666
Q ss_pred CCcEEEEeeC-----CceeeecCCCccccccCCCcEEEEeeccccc
Q 014125 365 FLPMAASSSG-----HRRFPVDDFEDLHLSGDENCVSVWSFLYASM 405 (430)
Q Consensus 365 ~~~~l~s~~~-----d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~~ 405 (430)
++..+..+.. .+...+-+.-.+...+.|..+++|++..+..
T Consensus 300 ~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~ 345 (391)
T 1l0q_A 300 VQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSS 345 (391)
T ss_dssp SCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCE
T ss_pred ccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCcc
Confidence 5543321111 1111111112344556688899999875543
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-30 Score=232.23 Aligned_cols=243 Identities=15% Similarity=0.251 Sum_probs=189.9
Q ss_pred eeecCCCeeeeeeeccccCccCCC---CceEEEEeCCCcEEEEeccC-Ccee-eeeecccccccccceEEEEECCCCcEE
Q 014125 114 LVVTEGESVYDFCWFPHMSASDPT---SCVFASTTRDHPIHLWDATT-GLLR-CTYRAYDAVDEITAAFSVAFNPTGTKI 188 (430)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~~~~~~---~~~l~~~~~dg~i~vwd~~~-~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l 188 (430)
....|...|.+++| +|+ +.+|++|+.||.|++||+.+ +... ..+..+.. .|.+++|+|++++|
T Consensus 34 ~~~~h~~~v~~~~~-------~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l 101 (368)
T 3mmy_A 34 VTSSPDDSIGCLSF-------SPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTG-----PVLDVCWSDDGSKV 101 (368)
T ss_dssp CSSCCSSCEEEEEE-------CCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSS-----CEEEEEECTTSSEE
T ss_pred eccCCCCceEEEEE-------cCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccC-----CEEEEEECcCCCEE
Confidence 34467789999999 555 69999999999999999987 4444 55555554 89999999999999
Q ss_pred EE-EcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEE--cCCCCceEEEecCCCeEEEEEcCCceeeEEeeccc
Q 014125 189 FA-GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAF--SPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE 265 (430)
Q Consensus 189 ~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~ 265 (430)
++ +.|+.|++||++.... . ....|...|.+++| +| ++.+|++++.||.|++||+++++.+..+..+.
T Consensus 102 ~s~~~dg~v~iwd~~~~~~--------~-~~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 171 (368)
T 3mmy_A 102 FTASCDKTAKMWDLSSNQA--------I-QIAQHDAPVKTIHWIKAP-NYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE 171 (368)
T ss_dssp EEEETTSEEEEEETTTTEE--------E-EEEECSSCEEEEEEEECS-SCEEEEEEETTSEEEEECSSCSSCSEEEECSS
T ss_pred EEEcCCCcEEEEEcCCCCc--------e-eeccccCceEEEEEEeCC-CCCEEEEccCCCcEEEEECCCCcEEEEEecCC
Confidence 85 5899999999986421 1 12457889999999 77 67789999999999999999999888888654
Q ss_pred cCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCE----EEEEccCCcEEEEEc
Q 014125 266 GGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRH----LGTGGQDGLVHIYDL 341 (430)
Q Consensus 266 ~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----l~~~~~dg~i~vwd~ 341 (430)
.+.++.+. ...+++++ .++.+++|+++........... .......++.+.++... +++++.||.|++||+
T Consensus 172 -~~~~~~~~--~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~ 245 (368)
T 3mmy_A 172 -RCYCADVI--YPMAVVAT-AERGLIVYQLENQPSEFRRIES--PLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYI 245 (368)
T ss_dssp -CEEEEEEE--TTEEEEEE-GGGCEEEEECSSSCEEEEECCC--SCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEES
T ss_pred -CceEEEec--CCeeEEEe-CCCcEEEEEeccccchhhhccc--cccCCCceEEEcccCCCCCCeEEEecCCCcEEEEec
Confidence 56666665 45788888 8999999999987665544433 33344555555555444 999999999999999
Q ss_pred CCC---CeecccccccC------------CeeEEEEcCCCcEEEEeeCCceeeecCCC
Q 014125 342 QTG---KWISGFQAAAD------------TVNGFSFHPFLPMAASSSGHRRFPVDDFE 384 (430)
Q Consensus 342 ~~~---~~~~~~~~~~~------------~v~~~~~~~~~~~l~s~~~d~~~~vw~~~ 384 (430)
+.. +.+..+..|.. .|.+++|+|++++|++++.||.|++|+..
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~ 303 (368)
T 3mmy_A 246 NPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKD 303 (368)
T ss_dssp SCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETT
T ss_pred CCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECC
Confidence 987 45666677765 79999999999999999976666666543
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-31 Score=232.73 Aligned_cols=235 Identities=12% Similarity=0.104 Sum_probs=179.3
Q ss_pred ecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE-cC
Q 014125 116 VTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YN 193 (430)
Q Consensus 116 ~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d 193 (430)
..|...|.+++| +|++.+|++|+.++ +++|++.+++........ .+..+++.+++..++ ++ .|
T Consensus 16 ~~h~~~V~~v~f-------s~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~d 80 (355)
T 3vu4_A 16 NHVSNPVTDYEF-------NQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR-------HLSKVRMLHRTNYVAFVTGVK 80 (355)
T ss_dssp ---CCCCCEEEE-------CTTSSEEEEECSSE-EEEEEETTEEEEEEEECS-------CCCEEEECTTSSEEEEECSST
T ss_pred ccCCCceEEEEE-------CCCCCEEEEEcCCE-EEEEecCCcceeeeeecC-------CeEEEEEcCCCCEEEEEECCc
Confidence 446789999999 77999999998886 789999877655443221 466788888888775 44 77
Q ss_pred CeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCc-eeeEEeeccccCeEEEE
Q 014125 194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-ELLYVLHGQEGGVTHVQ 272 (430)
Q Consensus 194 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~-~~~~~~~~~~~~i~~~~ 272 (430)
+.|++||+.++... ..+ .+...|.+++++++ .++++ .++.|++||+.++ +.+..+.. +...++
T Consensus 81 ~~v~iWd~~~~~~~----~~~-----~~~~~v~~v~~~~~---~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~ 144 (355)
T 3vu4_A 81 EVVHIWDDVKKQDV----SRI-----KVDAPVKDLFLSRE---FIVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCE 144 (355)
T ss_dssp TEEEEEETTTTEEE----EEE-----ECSSCEEEEEECSS---EEEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEE
T ss_pred cEEEEEECCCCcEE----EEE-----ECCCceEEEEEcCC---EEEEE-EcCEEEEEECCCCceeeEEecc---CCceEE
Confidence 89999999764211 111 23457999999873 34443 4789999999988 66666654 444556
Q ss_pred EccCCCEEEEE-ecCCCeEEEEeCCCCceE-----------EEE-eecccCCccceEEEEEcCCCCEEEEEccCCc-EEE
Q 014125 273 FSRDGNYLYTG-GRKDPYILCWDLRKAVQV-----------VYK-LYRSSEHTNQRILFDIEPSGRHLGTGGQDGL-VHI 338 (430)
Q Consensus 273 ~~~~~~~l~~~-~~~d~~i~i~d~~~~~~~-----------~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~v 338 (430)
+++ .+++++ +..||.|++||+++.... ... .....+|...|.+++|+|+|++|++|+.||+ |++
T Consensus 145 ~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~i 222 (355)
T 3vu4_A 145 FSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRV 222 (355)
T ss_dssp EET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEE
T ss_pred EEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEE
Confidence 666 567665 448999999999875310 000 2233689999999999999999999999998 999
Q ss_pred EEcCCCCeecccc-c-ccCCeeEEEEcCCCcEEEEeeCCceeeecCC
Q 014125 339 YDLQTGKWISGFQ-A-AADTVNGFSFHPFLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 339 wd~~~~~~~~~~~-~-~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~ 383 (430)
||+++++.+..+. + |...|.+++|+|++++|++++.|+.+++|+.
T Consensus 223 wd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~ 269 (355)
T 3vu4_A 223 FKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEI 269 (355)
T ss_dssp EETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEES
T ss_pred EECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEc
Confidence 9999999999998 5 9999999999999999999999999999964
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-31 Score=239.37 Aligned_cols=265 Identities=13% Similarity=0.040 Sum_probs=170.6
Q ss_pred cccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCcc-
Q 014125 56 SSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS- 134 (430)
Q Consensus 56 ~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~- 134 (430)
...|...+....+++++.+||+|+.|++|+|||+..+..... .......+|...|.+++|+|.....
T Consensus 85 ~~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~------------~~~~~~~gH~~~v~~v~~~p~~~~~~ 152 (393)
T 4gq1_A 85 ENLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQ------------HVLGGKSGHHNFVNDIDIADVYSADN 152 (393)
T ss_dssp CC----------CCEEEEEEEEEETTSCEEEEEEETTEEEEE------------EEECTTTSCSSCEEEEEEEEEECTTC
T ss_pred ccccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCcccee------------eeecccCCCCCceEEEEEcccccccc
Confidence 344555555566667788999999999999999876532110 0111234578899999998743322
Q ss_pred CCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCc-EEE-EEcCCeEEEEEcCCCCCcccccc
Q 014125 135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGT-KIF-AGYNKSVRVFDVHRPGRDFEKYS 212 (430)
Q Consensus 135 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~-~~~d~~i~v~d~~~~~~~~~~~~ 212 (430)
..++++|++|+.|++|++||+.++.....+..+.. .+.+++|+|++. +|+ ++.|+.|++||++.+........
T Consensus 153 ~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~-----~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~ 227 (393)
T 4gq1_A 153 RLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSS-----PGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQ 227 (393)
T ss_dssp SEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSS-----CEEEEEEETTEEEEEEEEETTSEEEEEETTCCC-------
T ss_pred CCCCCEEEEEECCCeEEEEECCCCceeeeecCCCC-----CcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccc
Confidence 23789999999999999999998877776666554 899999999985 566 45999999999987543221110
Q ss_pred -----------------cccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEcc
Q 014125 213 -----------------TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSR 275 (430)
Q Consensus 213 -----------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~ 275 (430)
.......+|...+.++.|.+.++..+++++.|+++++||+..++....+..|...+..+.+.|
T Consensus 228 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~ 307 (393)
T 4gq1_A 228 TELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLP 307 (393)
T ss_dssp ---CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSC
T ss_pred cCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcc
Confidence 011123467788999999854778999999999999999988776666655554444433332
Q ss_pred -------------------CCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcE
Q 014125 276 -------------------DGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLV 336 (430)
Q Consensus 276 -------------------~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 336 (430)
.+..++++++.||.|++||+.++...... ..|...|.+++|+|+|++||+++.+| +
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~----~~~~~~V~svafspdG~~LA~as~~G-v 382 (393)
T 4gq1_A 308 NVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIP----IQLGMPIVDFCWHQDGSHLAIATEGS-V 382 (393)
T ss_dssp SEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEE----EECSSCEEEEEECTTSSEEEEEESSE-E
T ss_pred ccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEe----cCCCCcEEEEEEcCCCCEEEEEeCCC-e
Confidence 23444444448999999999987655433 35778999999999999999998876 6
Q ss_pred EEEEcC
Q 014125 337 HIYDLQ 342 (430)
Q Consensus 337 ~vwd~~ 342 (430)
.+|.+.
T Consensus 383 ~lvrL~ 388 (393)
T 4gq1_A 383 LLTRLM 388 (393)
T ss_dssp EEEEEG
T ss_pred EEEEEe
Confidence 666543
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-29 Score=234.20 Aligned_cols=310 Identities=12% Similarity=0.040 Sum_probs=231.9
Q ss_pred EECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeC
Q 014125 67 KWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTR 146 (430)
Q Consensus 67 ~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 146 (430)
.|+|++.++++++.|++|.+||..+++....+ ..+ ..+..++| +|++++|++++.
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i----------------~~g--~~~~~v~~-------spdg~~l~v~~~ 198 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVI----------------DTG--YAVHISRM-------SASGRYLLVIGR 198 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEE----------------ECS--TTEEEEEE-------CTTSCEEEEEET
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEE----------------ecC--cccceEEE-------CCCCCEEEEECC
Confidence 38999999999999999999999876543211 112 23777778 889999999999
Q ss_pred CCcEEEEec--cCCceeeeeecccccccccceEEEEECC----CCcEEEEE--cCCeEEEEEcCCCCCcccccccccCCC
Q 014125 147 DHPIHLWDA--TTGLLRCTYRAYDAVDEITAAFSVAFNP----TGTKIFAG--YNKSVRVFDVHRPGRDFEKYSTLKGNK 218 (430)
Q Consensus 147 dg~i~vwd~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~~ 218 (430)
|+.|.+||+ .+++.+..+.... .+..++|+| +|++++++ .+++|.+||..+... ...+.......
T Consensus 199 d~~V~v~D~~~~t~~~~~~i~~g~------~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~-~~~i~~~g~~~ 271 (543)
T 1nir_A 199 DARIDMIDLWAKEPTKVAEIKIGI------EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP-KQIVSTRGMTV 271 (543)
T ss_dssp TSEEEEEETTSSSCEEEEEEECCS------EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCE-EEEEECCEECS
T ss_pred CCeEEEEECcCCCCcEEEEEecCC------CcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccccc-ceeecccCccc
Confidence 999999999 7888877776432 678999999 99998854 589999999876321 11111100000
Q ss_pred C---CC-CcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeE--EeeccccCeEEEEEccCCCEEEEEecCCCeEEE
Q 014125 219 E---GQ-AGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLY--VLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILC 292 (430)
Q Consensus 219 ~---~~-~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i 292 (430)
. .| ...+..+.++|++..++++...++.|.+||..+.+.+. .+. +...+..++|+|+|+++++++..+++|.+
T Consensus 272 ~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v 350 (543)
T 1nir_A 272 DTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAV 350 (543)
T ss_dssp SSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEE
T ss_pred CccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEE
Confidence 0 02 23689999999888888999999999999998765443 333 55678899999999998887757899999
Q ss_pred EeCCCCceEEEEeec-ccCCccceEEEEEcCC-CCEEEEEc-cCCcEEEEEcCC-------CCeecccccccCCeeEEEE
Q 014125 293 WDLRKAVQVVYKLYR-SSEHTNQRILFDIEPS-GRHLGTGG-QDGLVHIYDLQT-------GKWISGFQAAADTVNGFSF 362 (430)
Q Consensus 293 ~d~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~-~~~l~~~~-~dg~i~vwd~~~-------~~~~~~~~~~~~~v~~~~~ 362 (430)
||+.+++.. ..+.. ...|......+ ++|+ |..++++. .|++|.+||+.+ ++.++++.+|.+.+..+++
T Consensus 351 ~D~~tg~l~-~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~ 428 (543)
T 1nir_A 351 IDSKDRRLS-ALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKT 428 (543)
T ss_dssp EETTTTEEE-EEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEEC
T ss_pred EECCCCeEE-EeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEc
Confidence 999988543 23321 12344434333 4777 66677775 689999999998 8999999999989999999
Q ss_pred cCCCcEEEEee-------CCceeeecCCCc-----------------------------------cccc----cCCCcEE
Q 014125 363 HPFLPMAASSS-------GHRRFPVDDFED-----------------------------------LHLS----GDENCVS 396 (430)
Q Consensus 363 ~~~~~~l~s~~-------~d~~~~vw~~~~-----------------------------------l~~~----~~d~~i~ 396 (430)
+|++++|.+++ .++.|.|||... +++. +.|+.|.
T Consensus 429 ~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~ 508 (543)
T 1nir_A 429 HPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALV 508 (543)
T ss_dssp CTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEE
T ss_pred CCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEE
Confidence 99999999987 267899996542 2221 2478999
Q ss_pred EEeecccccccccCC
Q 014125 397 VWSFLYASMMENADG 411 (430)
Q Consensus 397 ~w~~~~~~~~~~~~~ 411 (430)
+||..+.+++..+.+
T Consensus 509 v~D~~t~~~~~~i~~ 523 (543)
T 1nir_A 509 VVDDKTLKLKAVVKD 523 (543)
T ss_dssp EEETTTTEEEEEECC
T ss_pred EEECCCceEEEeecC
Confidence 999999888877764
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-29 Score=223.14 Aligned_cols=245 Identities=16% Similarity=0.156 Sum_probs=172.1
Q ss_pred eeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCc----eeeeeecccccccccceEEEEECC--CCcE
Q 014125 114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGL----LRCTYRAYDAVDEITAAFSVAFNP--TGTK 187 (430)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~--~~~~ 187 (430)
....|...|.+++| +|++++|++++.||.|++||+.++. ....+..+.. .|.+++|+| ++.+
T Consensus 6 ~~~gH~~~v~~~~~-------~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~d~~~ 73 (351)
T 3f3f_A 6 FDSGHDDLVHDVVY-------DFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDS-----SIVAIDWASPEYGRI 73 (351)
T ss_dssp EECCCSSCEEEEEE-------CSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSS-----CEEEEEECCGGGCSE
T ss_pred cCcccccceeEEEE-------cCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCC-----cEEEEEEcCCCCCCE
Confidence 45568899999999 7789999999999999999998763 4444555444 899999999 5888
Q ss_pred EE-EEcCCeEEEEEcCCCCCcccc-cccccCCCCCCCcceEEEEEcCCC-CceEEEecCCCeEEEEEcCCceeeEEee--
Q 014125 188 IF-AGYNKSVRVFDVHRPGRDFEK-YSTLKGNKEGQAGIMSAIAFSPTH-TGMLAIGSYSQTSAIYREDNMELLYVLH-- 262 (430)
Q Consensus 188 l~-~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~~~d~~~~~~~~~~~-- 262 (430)
|+ ++.|+.|++||++........ ..........|...|.+++|+|+. +.++++++.||.|++||+++++.+..+.
T Consensus 74 l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 153 (351)
T 3f3f_A 74 IASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLT 153 (351)
T ss_dssp EEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEE
T ss_pred EEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccc
Confidence 88 458999999999875321100 001122335788899999999942 7799999999999999998876543332
Q ss_pred -----------ccccCeEEEEEccC---CCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCC----
Q 014125 263 -----------GQEGGVTHVQFSRD---GNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSG---- 324 (430)
Q Consensus 263 -----------~~~~~i~~~~~~~~---~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---- 324 (430)
.|...+.+++|+|+ +..+++++ .++.+.+|+....... .......|...|.+++|+|++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~~~~~~~~~~~~~~--~~~~~~~h~~~i~~~~~~p~~~~~~ 230 (351)
T 3f3f_A 154 SEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSA-LEQAIIYQRGKDGKLH--VAAKLPGHKSLIRSISWAPSIGRWY 230 (351)
T ss_dssp EEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEE-TTEEEEEEECTTSCEE--EEEECCCCCSCEEEEEECCCSSCSS
T ss_pred ccccccccccCCcccceeEEEeccCCCCCcEEEEec-CCCcEEEEccCCCcee--eeeecCCCCcceeEEEECCCCCCcc
Confidence 57788999999997 88999999 8999988887766432 223346789999999999998
Q ss_pred CEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEee
Q 014125 325 RHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSS 373 (430)
Q Consensus 325 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 373 (430)
++|++|+.||.|++||++++........+...+....+.+....++.+.
T Consensus 231 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (351)
T 3f3f_A 231 QLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGR 279 (351)
T ss_dssp EEEEEEETTSCEEEEEEEECC----------------------------
T ss_pred eEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccc
Confidence 8999999999999999998766555544444455555555555444443
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-28 Score=221.71 Aligned_cols=313 Identities=11% Similarity=0.060 Sum_probs=215.9
Q ss_pred CceeEEEECcCCc-eEEEec----CCC----eEEEEeC--CCCCCcccccccccccccCcccceeeecCCCeeeeeeecc
Q 014125 61 NFLKGIKWSPDGS-SFLTSS----EDK----TLRIFSL--PENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFP 129 (430)
Q Consensus 61 ~~v~~~~~sp~~~-~l~s~~----~dg----~v~iw~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 129 (430)
..+....|++.|. ++++|+ .|| .+++||+ .+++.... .....|...+..+++.+
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~ 127 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQ---------------NSYKVNKQWLRYAGHTA 127 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEE---------------EEEEECGGGHHHHHHHH
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEee---------------eEEEcChhHHHHHHHHH
Confidence 4678888988775 565776 467 8999999 76643211 11223334555555533
Q ss_pred cc-------CccCCCCceEEEEeCC------CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCC-
Q 014125 130 HM-------SASDPTSCVFASTTRD------HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNK- 194 (430)
Q Consensus 130 ~~-------~~~~~~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~- 194 (430)
.. ....+.+..++.++.+ +.|++||+..+ ....+..+.. .+.+++|+|+|+.|+ ++.++
T Consensus 128 ~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~-~~~~l~~~~~-----~v~~~~~Spdg~~la~~s~~~~ 201 (415)
T 2hqs_A 128 SDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGY-NQFVVHRSPQ-----PLMSPAWSPDGSKLAYVTFESG 201 (415)
T ss_dssp HHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSC-SCEEEEEESS-----CEEEEEECTTSSEEEEEECTTS
T ss_pred HHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCC-CCEEEeCCCC-----cceeeEEcCCCCEEEEEEecCC
Confidence 10 0001235566666554 79999999754 4455554443 899999999999998 45554
Q ss_pred --eEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCe--EEEEEcCCceeeEEeeccccCeEE
Q 014125 195 --SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQT--SAIYREDNMELLYVLHGQEGGVTH 270 (430)
Q Consensus 195 --~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--v~~~d~~~~~~~~~~~~~~~~i~~ 270 (430)
.|++||+.++.. .. ...+...+.+++|+|++..++++++.++. |++||+.+++. ..+..|...+.+
T Consensus 202 ~~~i~~~d~~tg~~-----~~----l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~ 271 (415)
T 2hqs_A 202 RSALVIQTLANGAV-----RQ----VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTE 271 (415)
T ss_dssp SCEEEEEETTTCCE-----EE----EECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEE
T ss_pred CcEEEEEECCCCcE-----EE----eecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccc
Confidence 999999986421 11 23455679999999965545557776654 99999988766 466678889999
Q ss_pred EEEccCCCEEEEEecCCC--eEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccC---CcEEEEEcCCCC
Q 014125 271 VQFSRDGNYLYTGGRKDP--YILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQD---GLVHIYDLQTGK 345 (430)
Q Consensus 271 ~~~~~~~~~l~~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~ 345 (430)
++|+|+|++|++++..++ .|++||+.++... .+ ..+...+..++|+|+|++|++++.+ ..|++||+.+++
T Consensus 272 ~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~--~l---~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~ 346 (415)
T 2hqs_A 272 PTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ--RI---TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG 346 (415)
T ss_dssp EEECTTSSEEEEEECTTSSCEEEEEETTSSCCE--EC---CCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC
T ss_pred eEECCCCCEEEEEECCCCCcEEEEEECCCCCEE--EE---ecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCC
Confidence 999999999998883345 6888898876422 22 3355678899999999999988765 579999999888
Q ss_pred eecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCCCccccccCCCcEEEEeecccccccccCCCCcceeeeeccCcc
Q 014125 346 WISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYASMMENADGINGCEFNCQSEHEN 425 (430)
Q Consensus 346 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (430)
.. .+..+. .+.+++|+|+|++|++++.++ ....|++|++. ++....+.++.+ .+.+....++
T Consensus 347 ~~-~l~~~~-~~~~~~~spdg~~l~~~s~~~--------------~~~~l~~~d~~-g~~~~~l~~~~~-~v~~~~~~~~ 408 (415)
T 2hqs_A 347 VQ-VLSSTF-LDETPSLAPNGTMVIYSSSQG--------------MGSVLNLVSTD-GRFKARLPATDG-QVKFPAWSPY 408 (415)
T ss_dssp EE-ECCCSS-SCEEEEECTTSSEEEEEEEET--------------TEEEEEEEETT-SCCEEECCCSSS-EEEEEEECCC
T ss_pred EE-EecCCC-CcCCeEEcCCCCEEEEEEcCC--------------CccEEEEEECC-CCcEEEeeCCCC-CCcCCccccc
Confidence 64 455454 899999999999999887532 11267778776 444556666655 4555565555
Q ss_pred CC
Q 014125 426 LN 427 (430)
Q Consensus 426 ~~ 427 (430)
+.
T Consensus 409 ~~ 410 (415)
T 2hqs_A 409 LH 410 (415)
T ss_dssp CC
T ss_pred cc
Confidence 43
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.96 E-value=5.8e-28 Score=205.08 Aligned_cols=187 Identities=12% Similarity=0.141 Sum_probs=134.7
Q ss_pred CCceEEEEe--CCCcEEEEec-cCCceeeeeecccccccccceEEEEECC---CCcEEEE-EcCCeEEEEEcCCCCCccc
Q 014125 137 TSCVFASTT--RDHPIHLWDA-TTGLLRCTYRAYDAVDEITAAFSVAFNP---TGTKIFA-GYNKSVRVFDVHRPGRDFE 209 (430)
Q Consensus 137 ~~~~l~~~~--~dg~i~vwd~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~-~~d~~i~v~d~~~~~~~~~ 209 (430)
+++++.+++ .|+.|++|++ ++++.+..+..+.. .+..++|+| ++.+|++ +.|++|+|||+.++.. .
T Consensus 144 ~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~-----~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~-l- 216 (356)
T 2w18_A 144 KRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPP-----EETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQL-L- 216 (356)
T ss_dssp TTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCC-----SSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCE-E-
T ss_pred CCcEEEecccCCCCcEEEEEECCCCceeeeeccCCC-----ceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcE-E-
Confidence 455666644 5999999999 55888777777665 788889998 7789995 5999999999987421 1
Q ss_pred ccccccCCCCCCCcceEEEEEcCCCCceE------------EEecCCCeEEEEEcCCceeeEEe-----eccccCeEEEE
Q 014125 210 KYSTLKGNKEGQAGIMSAIAFSPTHTGML------------AIGSYSQTSAIYREDNMELLYVL-----HGQEGGVTHVQ 272 (430)
Q Consensus 210 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l------------~~~~~dg~v~~~d~~~~~~~~~~-----~~~~~~i~~~~ 272 (430)
..+... ..+...+.+++|+|+ +.++ ++|+.|++|++||..+++.+..+ .+|...+.+..
T Consensus 217 --~tL~g~-~~~v~~v~~vafSpd-G~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~ 292 (356)
T 2w18_A 217 --KKMHID-DSYQASVCHKAYSEM-GLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGD 292 (356)
T ss_dssp --EEEECC-C---CCCEEEEEEET-TEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEE
T ss_pred --EEEcCC-CcceeeeEEEEECCC-CCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccc
Confidence 112110 112346888899994 4444 67889999999999999887655 35655554444
Q ss_pred EccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceE-EEEEcCCCCEEEEEccCCcEEEEEc
Q 014125 273 FSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRI-LFDIEPSGRHLGTGGQDGLVHIYDL 341 (430)
Q Consensus 273 ~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~vwd~ 341 (430)
+ ++..+++++ .|++|+|||+.+++... .+ .+|...+. .++|+|+|++|++|+.|++|+|||+
T Consensus 293 ~--sg~~lASgS-~DgTIkIWDl~tGk~l~-tL---~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 293 V--KDHCAAAIL-TSGTIAIWDLLLGQCTA-LL---PPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp E--ETTEEEEEE-TTSCEEEEETTTCSEEE-EE---CCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred c--CCCEEEEEc-CCCcEEEEECCCCcEEE-Ee---cCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 4 477888888 99999999999986443 33 45665544 5899999999999999999999996
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-26 Score=216.68 Aligned_cols=287 Identities=12% Similarity=0.049 Sum_probs=211.3
Q ss_pred eeEEEECcCCceEEEecCCCeEEEEeC--CCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCC----
Q 014125 63 LKGIKWSPDGSSFLTSSEDKTLRIFSL--PENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP---- 136 (430)
Q Consensus 63 v~~~~~sp~~~~l~s~~~dg~v~iw~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---- 136 (430)
+.+++|+|||++|++++.|++|++||+ .+++.. ..+..+..+..++| +|
T Consensus 181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~------------------~~i~~g~~p~~va~-------sp~~~~ 235 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKV------------------AEIKIGIEARSVES-------SKFKGY 235 (543)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEE------------------EEEECCSEEEEEEE-------CCSTTC
T ss_pred cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEE------------------EEEecCCCcceEEe-------CCCcCC
Confidence 889999999999999999999999999 543221 12234556788888 88
Q ss_pred CCceEEEEeC-CCcEEEEeccCCceeeeeeccccc-----cc-ccceEEEEECCCCcEEEE-E-cCCeEEEEEcCCCCCc
Q 014125 137 TSCVFASTTR-DHPIHLWDATTGLLRCTYRAYDAV-----DE-ITAAFSVAFNPTGTKIFA-G-YNKSVRVFDVHRPGRD 207 (430)
Q Consensus 137 ~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~-----~~-~~~v~~~~~~~~~~~l~~-~-~d~~i~v~d~~~~~~~ 207 (430)
+|+++++++. +++|.+||..+++++..+...... -+ ...+.++.++|++..+++ . .++.|.+||+......
T Consensus 236 dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l 315 (543)
T 1nir_A 236 EDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNL 315 (543)
T ss_dssp TTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSC
T ss_pred CCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcc
Confidence 8999998885 899999999999988887653210 01 126789999998877664 3 7899999999764321
Q ss_pred ccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeec----cccCeEEEEEccC-CCEEEE
Q 014125 208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG----QEGGVTHVQFSRD-GNYLYT 282 (430)
Q Consensus 208 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~----~~~~i~~~~~~~~-~~~l~~ 282 (430)
. ...+ .+...+..+.|+|++..+++++..+++|.+||..+++.+..+.. |.+....+ ++|+ +..+++
T Consensus 316 ~--~~~i-----~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s 387 (543)
T 1nir_A 316 T--VTSI-----GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWST 387 (543)
T ss_dssp E--EEEE-----ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEE
T ss_pred e--eEEe-----ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEe
Confidence 1 0011 12345778999996655666777799999999999998887764 54433333 4677 444444
Q ss_pred EecCCCeEEEEeCCCC------ceEEEEeecccCCccceEEEEEcCCCCEEEEEc-------cCCcEEEEEcCCCCee-c
Q 014125 283 GGRKDPYILCWDLRKA------VQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGG-------QDGLVHIYDLQTGKWI-S 348 (430)
Q Consensus 283 ~~~~d~~i~i~d~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------~dg~i~vwd~~~~~~~-~ 348 (430)
+...|++|.+||+.+. .+.+..+ ..+...+..+.++|+|++|++++ .+++|.|||+.+++.. .
T Consensus 388 ~~~~d~~V~v~d~~~~~~~~~~~~~v~~l---~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~ 464 (543)
T 1nir_A 388 SHLGDGSISLIGTDPKNHPQYAWKKVAEL---QGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQ 464 (543)
T ss_dssp EBSSSSEEEEEECCTTTCTTTBTSEEEEE---ECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCE
T ss_pred ccCCCceEEEEEeCCCCCchhcCeEEEEE---EcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeE
Confidence 4325799999999872 1333333 45666778899999999999987 3679999999998876 3
Q ss_pred cc--------ccccCCeeEEEEcCCCcEEEEee-----CCceeeecCCCc
Q 014125 349 GF--------QAAADTVNGFSFHPFLPMAASSS-----GHRRFPVDDFED 385 (430)
Q Consensus 349 ~~--------~~~~~~v~~~~~~~~~~~l~s~~-----~d~~~~vw~~~~ 385 (430)
.+ ..+...+..++|+|+|+.|..+. .++.|.|||..+
T Consensus 465 ~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t 514 (543)
T 1nir_A 465 VLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKT 514 (543)
T ss_dssp EECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTT
T ss_pred EeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCC
Confidence 33 34567899999999999888763 379999998765
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-26 Score=227.19 Aligned_cols=299 Identities=14% Similarity=0.141 Sum_probs=201.5
Q ss_pred CCceeEEEECcCCceEEEecC-CC-----eEEEEeCCCCCCcccccccccccc-------cCcccceeeecCCCeeeeee
Q 014125 60 NNFLKGIKWSPDGSSFLTSSE-DK-----TLRIFSLPENGISYDVNACSLAKD-------QDSYEASLVVTEGESVYDFC 126 (430)
Q Consensus 60 ~~~v~~~~~sp~~~~l~s~~~-dg-----~v~iw~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~v~~~~ 126 (430)
...|.+++|||||++|++++. |+ .|++||+.+++............. ...............+.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 446999999999999999998 88 899999988754322211100000 00000000000013467788
Q ss_pred eccccCccCCCCceEEEEeCCCcEEEEeccCCc--eeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCC
Q 014125 127 WFPHMSASDPTSCVFASTTRDHPIHLWDATTGL--LRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRP 204 (430)
Q Consensus 127 ~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~ 204 (430)
| +|||++|++++. +.|++||+.++. ....+..+. ..+..++|+|||++|+.+.++.|++||+..+
T Consensus 116 ~-------SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~-----~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g 182 (741)
T 2ecf_A 116 W-------SPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGE-----GFATDAKLSPKGGFVSFIRGRNLWVIDLASG 182 (741)
T ss_dssp E-------CTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSS-----SCEEEEEECTTSSEEEEEETTEEEEEETTTT
T ss_pred E-------CCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCC-----cccccccCCCCCCEEEEEeCCcEEEEecCCC
Confidence 8 889999999887 899999999872 223333332 2788999999999999777889999999763
Q ss_pred CCcccccccccCCCCCCCc----------------ceEEEEEcCCCCceEEEecCCC-----------------------
Q 014125 205 GRDFEKYSTLKGNKEGQAG----------------IMSAIAFSPTHTGMLAIGSYSQ----------------------- 245 (430)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~----------------~v~~~~~~~~~~~~l~~~~~dg----------------------- 245 (430)
... .+ ...+.. .+..++|+|+ ++.|++++.|+
T Consensus 183 ~~~-----~~---~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpD-g~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~ 253 (741)
T 2ecf_A 183 RQM-----QL---TADGSTTIGNGIAEFVADEEMDRHTGYWWAPD-DSAIAYARIDESPVPVQKRYEVYADRTDVIEQRY 253 (741)
T ss_dssp EEE-----EC---CCCCCSSEEESCCCHHHHHHSCCCCSEEECTT-SSCEEEEEEECTTSCEEEEEEECSSCEEEEEEEC
T ss_pred CEE-----Ee---ccCCccceeccccceeeeeccccccceEECCC-CCEEEEEEEcCCCCceEecCCCCCCcccceEeec
Confidence 211 11 011111 1477999994 55666666554
Q ss_pred ----------eEEEEEcCC-ceeeEEee--ccccCeEEEEEccCCCEEEEEec----CCCeEEEEeCCCCceEEEEeecc
Q 014125 246 ----------TSAIYREDN-MELLYVLH--GQEGGVTHVQFSRDGNYLYTGGR----KDPYILCWDLRKAVQVVYKLYRS 308 (430)
Q Consensus 246 ----------~v~~~d~~~-~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~----~d~~i~i~d~~~~~~~~~~~~~~ 308 (430)
.|++||+.+ ++...... .|...+..++| |||++|++++. .+..|++||+.++..........
T Consensus 254 ~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~ 332 (741)
T 2ecf_A 254 PAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETS 332 (741)
T ss_dssp CBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEEC
T ss_pred CCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCC
Confidence 788999988 77654433 36678999999 99999997762 25689999999875433221111
Q ss_pred cCCccceEEEEEcCCCCEEEEEccCCcEEEEEcC-CCCeecccccccCCeeEE-EEcCCCcEEEEeeC-Cc--eeeecC
Q 014125 309 SEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQ-TGKWISGFQAAADTVNGF-SFHPFLPMAASSSG-HR--RFPVDD 382 (430)
Q Consensus 309 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~v~~~-~~~~~~~~l~s~~~-d~--~~~vw~ 382 (430)
......+..++|+|+|+++++++.||.++||.++ +++ ...+..|...|..+ .|+|+++.|+..+. ++ .++||+
T Consensus 333 ~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~ 410 (741)
T 2ecf_A 333 PTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYA 410 (741)
T ss_dssp SSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEE
T ss_pred CCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEE
Confidence 1111134578999999999999999988888765 345 77777788888887 59999997765544 43 666763
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-26 Score=209.97 Aligned_cols=264 Identities=14% Similarity=0.159 Sum_probs=197.2
Q ss_pred ecccCCCceeEEEECc--------------CCceEEEecCC------CeEEEEeCCCCCCcccccccccccccCccccee
Q 014125 55 TSSIPNNFLKGIKWSP--------------DGSSFLTSSED------KTLRIFSLPENGISYDVNACSLAKDQDSYEASL 114 (430)
Q Consensus 55 ~~~~h~~~v~~~~~sp--------------~~~~l~s~~~d------g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (430)
.+.+|...+..+++++ .+..++.++.+ +.|++||++... ...
T Consensus 112 ~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~------------------~~~ 173 (415)
T 2hqs_A 112 SYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN------------------QFV 173 (415)
T ss_dssp EEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS------------------CEE
T ss_pred EEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC------------------CEE
Confidence 4677888888877775 15566666554 799999997432 123
Q ss_pred eecCCCeeeeeeeccccCccCCCCceEEEEeCCC---cEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-E
Q 014125 115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDH---PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-A 190 (430)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~ 190 (430)
...|...+.+++| +|+|+.|++++.++ .|++||+.+++... +..+.. .+.+++|+|+|+.|+ +
T Consensus 174 l~~~~~~v~~~~~-------Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~-l~~~~~-----~~~~~~~spdg~~la~~ 240 (415)
T 2hqs_A 174 VHRSPQPLMSPAW-------SPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPR-----HNGAPAFSPDGSKLAFA 240 (415)
T ss_dssp EEEESSCEEEEEE-------CTTSSEEEEEECTTSSCEEEEEETTTCCEEE-EECCSS-----CEEEEEECTTSSEEEEE
T ss_pred EeCCCCcceeeEE-------cCCCCEEEEEEecCCCcEEEEEECCCCcEEE-eecCCC-----cccCEEEcCCCCEEEEE
Confidence 3445678999999 78999999999885 99999999987653 333332 788999999999888 5
Q ss_pred E-cCC--eEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecC-CC--eEEEEEcCCceeeEEeecc
Q 014125 191 G-YNK--SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY-SQ--TSAIYREDNMELLYVLHGQ 264 (430)
Q Consensus 191 ~-~d~--~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg--~v~~~d~~~~~~~~~~~~~ 264 (430)
+ .++ .|++||+..... . .+..+...+.+++|+|+ +..|++++. ++ .|++||+.+++. ..+..+
T Consensus 241 ~~~~g~~~i~~~d~~~~~~-----~----~l~~~~~~~~~~~~spd-g~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~ 309 (415)
T 2hqs_A 241 LSKTGSLNLYVMDLASGQI-----R----QVTDGRSNNTEPTWFPD-SQNLAFTSDQAGRPQVYKVNINGGAP-QRITWE 309 (415)
T ss_dssp ECTTSSCEEEEEETTTCCE-----E----ECCCCSSCEEEEEECTT-SSEEEEEECTTSSCEEEEEETTSSCC-EECCCS
T ss_pred EecCCCceEEEEECCCCCE-----E----eCcCCCCcccceEECCC-CCEEEEEECCCCCcEEEEEECCCCCE-EEEecC
Confidence 4 344 599999876321 1 12456678999999995 455555554 55 678889887764 344556
Q ss_pred ccCeEEEEEccCCCEEEEEecC--CCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCC---cEEEE
Q 014125 265 EGGVTHVQFSRDGNYLYTGGRK--DPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDG---LVHIY 339 (430)
Q Consensus 265 ~~~i~~~~~~~~~~~l~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~vw 339 (430)
...+.+++|+|+|++|++++.. +..|++||+.++... .+ ..+. .+.+++|+|+|++|++++.++ .|++|
T Consensus 310 ~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~--~l---~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~ 383 (415)
T 2hqs_A 310 GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ--VL---SSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLV 383 (415)
T ss_dssp SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE--EC---CCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEE
T ss_pred CCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE--Ee---cCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEE
Confidence 6788999999999999988833 258999999987542 22 2232 789999999999999988877 79999
Q ss_pred EcCCCCeecccccccCCeeEEEEcCCCc
Q 014125 340 DLQTGKWISGFQAAADTVNGFSFHPFLP 367 (430)
Q Consensus 340 d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 367 (430)
|+. +.....+..|.+.|.+++|+|...
T Consensus 384 d~~-g~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 384 STD-GRFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp ETT-SCCEEECCCSSSEEEEEEECCCCC
T ss_pred ECC-CCcEEEeeCCCCCCcCCccccccc
Confidence 987 555778888999999999999654
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.4e-25 Score=194.02 Aligned_cols=279 Identities=11% Similarity=0.104 Sum_probs=189.4
Q ss_pred EECcCCc-eEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEe
Q 014125 67 KWSPDGS-SFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTT 145 (430)
Q Consensus 67 ~~sp~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 145 (430)
.|.++++ .+++++.++.|.+||+.+++.... .. .+...+ .++| +|+++++++++
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~----------------~~-~~~~~~-~~~~-------s~dg~~l~~~~ 58 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQ----------------IT-LGYDFV-DTAI-------TSDCSNVVVTS 58 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEE----------------EE-CCCCEE-EEEE-------CSSSCEEEEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeee----------------EE-ccCCcc-eEEE-------cCCCCEEEEEe
Confidence 4555544 577888899999999987644211 11 123445 7888 77898666665
Q ss_pred C-CCcEEEEeccCCce-eeeeecccccccccceEEEEECCCCcEEEEEcCC----eEEEEEcCCCCCcccccccccCCCC
Q 014125 146 R-DHPIHLWDATTGLL-RCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNK----SVRVFDVHRPGRDFEKYSTLKGNKE 219 (430)
Q Consensus 146 ~-dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~----~i~v~d~~~~~~~~~~~~~~~~~~~ 219 (430)
. ++.|.+||+.+++. ...+..... +..+++|+|++++++++.++ .|.+||+..... . ..+ .
T Consensus 59 ~~~~~i~~~d~~~~~~~~~~~~~~~~-----~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~-~---~~~----~ 125 (331)
T 3u4y_A 59 DFCQTLVQIETQLEPPKVVAIQEGQS-----SMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKF-I---STI----P 125 (331)
T ss_dssp STTCEEEEEECSSSSCEEEEEEECSS-----CCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEE-E---EEE----E
T ss_pred CCCCeEEEEECCCCceeEEecccCCC-----CccceEECCCCCEEEEecCCCCcccEEEEECCCCCe-E---EEE----E
Confidence 5 88999999999887 555554432 34349999999999865433 899999976321 1 111 1
Q ss_pred CCCcceEEEEEcCCCCceEEEecCCCe-EEEEEcCCceeeE----EeeccccCeEEEEEccCCCEEEEEecCCCeEEEEe
Q 014125 220 GQAGIMSAIAFSPTHTGMLAIGSYSQT-SAIYREDNMELLY----VLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWD 294 (430)
Q Consensus 220 ~~~~~v~~~~~~~~~~~~l~~~~~dg~-v~~~d~~~~~~~~----~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d 294 (430)
......+++|+|++..++++...++. |.+|++.....+. ...........++|+|+|+++++++..++.|++||
T Consensus 126 -~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d 204 (331)
T 3u4y_A 126 -IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILE 204 (331)
T ss_dssp -CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred -CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEE
Confidence 12346899999966666677677788 9999987543321 11123456899999999998877775789999999
Q ss_pred CCCCceE--EEEeecccCCccceEEEEEcCCCCEEEEEc-cCCcEEEEEcCCCCe--ecccccc----cC---CeeEEEE
Q 014125 295 LRKAVQV--VYKLYRSSEHTNQRILFDIEPSGRHLGTGG-QDGLVHIYDLQTGKW--ISGFQAA----AD---TVNGFSF 362 (430)
Q Consensus 295 ~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~--~~~~~~~----~~---~v~~~~~ 362 (430)
+.+.... ...+ .....+..++|+|+|++|++++ .++.|.+||+.+++. +..+..+ .. ....++|
T Consensus 205 ~~~~~~~~~~~~~----~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (331)
T 3u4y_A 205 TQNPENITLLNAV----GTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMAL 280 (331)
T ss_dssp CSSTTSCEEEEEE----ECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEE
T ss_pred CCCCcccceeeec----cCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEE
Confidence 9877541 2122 1235667899999999776554 577899999998877 3322211 22 2356899
Q ss_pred cCCCcEEEEeeCCceeeecCCCccccccCCCcEEEEeecccc
Q 014125 363 HPFLPMAASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYAS 404 (430)
Q Consensus 363 ~~~~~~l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~ 404 (430)
+|++++|++++. .++.|++|++....
T Consensus 281 spdg~~l~v~~~----------------~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 281 NKTETKLFISAN----------------ISRELKVFTISGKV 306 (331)
T ss_dssp CTTSSEEEEEET----------------TTTEEEEEETTSCE
T ss_pred CCCCCEEEEecC----------------CCCcEEEEEecCCc
Confidence 999998877664 35567777765433
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-25 Score=194.82 Aligned_cols=258 Identities=15% Similarity=0.135 Sum_probs=187.4
Q ss_pred EecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEecc
Q 014125 77 TSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDAT 156 (430)
Q Consensus 77 s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~ 156 (430)
+++.|+.|++||+.+++. .....+...|.+++| +|++++|++++ ++.|++||+.
T Consensus 17 ~~~~~~~i~~~d~~~~~~------------------~~~~~~~~~v~~~~~-------spdg~~l~~~~-~~~i~~~d~~ 70 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKM------------------RVVWQTPELFEAPNW-------SPDGKYLLLNS-EGLLYRLSLA 70 (297)
T ss_dssp -CCCCEEEEEEETTTTEE------------------EEEEEESSCCEEEEE-------CTTSSEEEEEE-TTEEEEEESS
T ss_pred CCCcceeEEEEeCCCCce------------------eeeccCCcceEeeEE-------CCCCCEEEEEc-CCeEEEEeCC
Confidence 456789999999986532 123345678999999 77999999986 7899999999
Q ss_pred C-CceeeeeecccccccccceEEEEECCCCcEEEEEc---CCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcC
Q 014125 157 T-GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGY---NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSP 232 (430)
Q Consensus 157 ~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 232 (430)
+ ++.......+. ...+.+++|+|++++|+.+. ++...+|.++....... .+ . ....+..++|+|
T Consensus 71 ~~~~~~~~~~~~~----~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~---~~----~-~~~~~~~~~~sp 138 (297)
T 2ojh_A 71 GDPSPEKVDTGFA----TICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPR---LM----T-KNLPSYWHGWSP 138 (297)
T ss_dssp SCCSCEECCCTTC----CCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCE---EC----C-SSSSEEEEEECT
T ss_pred CCCCceEeccccc----cccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceE---Ee----e-cCCCccceEECC
Confidence 8 77665544332 12678899999999998542 34555665543222111 11 1 122388899999
Q ss_pred CCCceEEEecCCCeEEEEEcCC-ceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCC
Q 014125 233 THTGMLAIGSYSQTSAIYREDN-MELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEH 311 (430)
Q Consensus 233 ~~~~~l~~~~~dg~v~~~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 311 (430)
++..+++++..++.+++|+++. ......+..+...+.+++|+|+++.|++++..++.+++|++.........+ ..+
T Consensus 139 dg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~---~~~ 215 (297)
T 2ojh_A 139 DGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERI---TDS 215 (297)
T ss_dssp TSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEEC---CCC
T ss_pred CCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEE---ecC
Confidence 6655555888899999998642 233455666778899999999999888777458999999886332333232 345
Q ss_pred ccceEEEEEcCCCCEEEEEccC-----------CcEEEEEcCCCCee--cccccccCCeeEEEEcCCCcEEEEeeCC
Q 014125 312 TNQRILFDIEPSGRHLGTGGQD-----------GLVHIYDLQTGKWI--SGFQAAADTVNGFSFHPFLPMAASSSGH 375 (430)
Q Consensus 312 ~~~v~~~~~~~~~~~l~~~~~d-----------g~i~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~s~~~d 375 (430)
...+..++|+|+|++|++++.+ +.|++||+.+++.. ..+.+|...+..++|+|+++.|++++.+
T Consensus 216 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 292 (297)
T 2ojh_A 216 AYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYF 292 (297)
T ss_dssp SEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred CcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEec
Confidence 6778899999999999888776 56999999988763 3444778899999999999999888764
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=7e-25 Score=194.21 Aligned_cols=265 Identities=15% Similarity=0.206 Sum_probs=177.3
Q ss_pred eEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCC-CcEEE
Q 014125 74 SFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRD-HPIHL 152 (430)
Q Consensus 74 ~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d-g~i~v 152 (430)
.+++++.|+.|++|++..... ........+...+.+++| +|++++|++++.+ +.|.+
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~-------spdg~~l~~~~~~~~~v~~ 64 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGA---------------LTLTQVVDVPGQVQPMVV-------SPDKRYLYVGVRPEFRVLA 64 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSC---------------EEEEEEEECSSCCCCEEE-------CTTSSEEEEEETTTTEEEE
T ss_pred EEEeCCCCCeEEEEEECCCCc---------------EEEeeeEecCCCCceEEE-------CCCCCEEEEeecCCCeEEE
Confidence 444557899999999863210 011122345567788888 7789988888876 99999
Q ss_pred Eecc--CCceee--eeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCCcccccccccCCCCCCCcceE
Q 014125 153 WDAT--TGLLRC--TYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMS 226 (430)
Q Consensus 153 wd~~--~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~ 226 (430)
|++. +++... .+... ..+..++|+|++++++ ++ .++.|.+||+.. +......... . ....+.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~-~~~~~~~~~~----~-~~~~~~ 132 (343)
T 1ri6_A 65 YRIAPDDGALTFAAESALP------GSLTHISTDHQGQFVFVGSYNAGNVSVTRLED-GLPVGVVDVV----E-GLDGCH 132 (343)
T ss_dssp EEECTTTCCEEEEEEEECS------SCCSEEEECTTSSEEEEEETTTTEEEEEEEET-TEEEEEEEEE----C-CCTTBC
T ss_pred EEecCCCCceeeccccccC------CCCcEEEEcCCCCEEEEEecCCCeEEEEECCC-Cccccccccc----c-CCCCce
Confidence 9997 555332 22221 1667899999999887 44 488999999952 2111111111 1 123478
Q ss_pred EEEEcCCCCceEEEecCCCeEEEEEcCC-ceeeE----Eeec-cccCeEEEEEccCCCEEEEEecCCCeEEEEeCCC--C
Q 014125 227 AIAFSPTHTGMLAIGSYSQTSAIYREDN-MELLY----VLHG-QEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRK--A 298 (430)
Q Consensus 227 ~~~~~~~~~~~l~~~~~dg~v~~~d~~~-~~~~~----~~~~-~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~--~ 298 (430)
+++|+|++..+++++..++.|.+||+.+ ++... .+.. ....+..++|+|+++++++++..++.|.+|++.. +
T Consensus 133 ~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g 212 (343)
T 1ri6_A 133 SANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHG 212 (343)
T ss_dssp CCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTS
T ss_pred EEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCC
Confidence 8999995554444444899999999987 54432 2222 3347889999999998877765789999999964 2
Q ss_pred ceE-EEEeeccc---CCccceEEEEEcCCCCEEE-EEccCCcEEEEEcC--CC--CeecccccccCCeeEEEEcCCCcEE
Q 014125 299 VQV-VYKLYRSS---EHTNQRILFDIEPSGRHLG-TGGQDGLVHIYDLQ--TG--KWISGFQAAADTVNGFSFHPFLPMA 369 (430)
Q Consensus 299 ~~~-~~~~~~~~---~~~~~v~~~~~~~~~~~l~-~~~~dg~i~vwd~~--~~--~~~~~~~~~~~~v~~~~~~~~~~~l 369 (430)
... ........ .....+..++|+|+|++|+ ++..++.|.+||+. ++ +.+..+..+.. +.+++|+|++++|
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l 291 (343)
T 1ri6_A 213 NIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYL 291 (343)
T ss_dssp CCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEE
T ss_pred cEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEE
Confidence 211 11111111 1234577899999998877 55578999999998 33 34444544444 8999999999988
Q ss_pred EEee
Q 014125 370 ASSS 373 (430)
Q Consensus 370 ~s~~ 373 (430)
++++
T Consensus 292 ~~~~ 295 (343)
T 1ri6_A 292 IAAG 295 (343)
T ss_dssp EEEC
T ss_pred EEec
Confidence 8876
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-24 Score=192.19 Aligned_cols=275 Identities=10% Similarity=0.072 Sum_probs=200.4
Q ss_pred CCceeEEEECcCCceEEEecC-------CCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccC
Q 014125 60 NNFLKGIKWSPDGSSFLTSSE-------DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS 132 (430)
Q Consensus 60 ~~~v~~~~~sp~~~~l~s~~~-------dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 132 (430)
...+..++|+|+|++|++++. ++.|.+||..+++.... +..+..+..++|
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~------------------~~~~~~~~~~~~----- 96 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQA------------------IHNDLKPFGATI----- 96 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEE------------------EEESSCCCSEEE-----
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEE------------------EecCCCcceEEE-----
Confidence 456889999999998888774 56899999987643211 112234566777
Q ss_pred ccCCCCceE-EEEeCCCcEEEEeccCCceeeeeecccccc----cccceEEEEECCCCcEEEEE---cCCeEEEEEcCCC
Q 014125 133 ASDPTSCVF-ASTTRDHPIHLWDATTGLLRCTYRAYDAVD----EITAAFSVAFNPTGTKIFAG---YNKSVRVFDVHRP 204 (430)
Q Consensus 133 ~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~---~d~~i~v~d~~~~ 204 (430)
+|+++.+ ++...++.|.+||+.+++.+..+....... ....+.+++|+|+++.++++ .++.|.+||..+.
T Consensus 97 --s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~ 174 (353)
T 3vgz_A 97 --NNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNI 174 (353)
T ss_dssp --ETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTT
T ss_pred --CCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCC
Confidence 6788855 455667999999999999888776643211 01126789999999987743 3788999999763
Q ss_pred CCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeec----cccCeEEEEEccCCCEE
Q 014125 205 GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG----QEGGVTHVQFSRDGNYL 280 (430)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l 280 (430)
... .. ...+...+..++|+| +++.+++++.++.|.+||..+++....+.. +...+..++|+|+++++
T Consensus 175 ~~~----~~----~~~~~~~~~~~~~s~-dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l 245 (353)
T 3vgz_A 175 KLK----TA----IQNTGKMSTGLALDS-EGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRA 245 (353)
T ss_dssp EEE----EE----ECCCCTTCCCCEEET-TTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEE
T ss_pred ceE----EE----ecCCCCccceEEECC-CCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEE
Confidence 211 11 122233467889999 556777788899999999999988877664 45568889999999988
Q ss_pred EEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEc-cCCcEEEEEcCCCCeecccccccCCeeE
Q 014125 281 YTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGG-QDGLVHIYDLQTGKWISGFQAAADTVNG 359 (430)
Q Consensus 281 ~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~v~~ 359 (430)
++++..++.|.+||+.++.... .... .. ...++|+|+|+++++++ .++.|.+||+.+++.+..+..+ ..+.+
T Consensus 246 ~~~~~~~~~v~~~d~~~~~~~~-~~~~--~~---~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~ 318 (353)
T 3vgz_A 246 FITDSKAAEVLVVDTRNGNILA-KVAA--PE---SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP-THPNS 318 (353)
T ss_dssp EEEESSSSEEEEEETTTCCEEE-EEEC--SS---CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC-SEEEE
T ss_pred EEEeCCCCEEEEEECCCCcEEE-EEEc--CC---CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC-CCCCe
Confidence 8887456999999998875432 2221 11 24689999999665554 6899999999999988877644 46799
Q ss_pred EEEcCCCcEEEEeeCC
Q 014125 360 FSFHPFLPMAASSSGH 375 (430)
Q Consensus 360 ~~~~~~~~~l~s~~~d 375 (430)
++|+|++++|+.+..+
T Consensus 319 ~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 319 LALSADGKTLYVSVKQ 334 (353)
T ss_dssp EEECTTSCEEEEEEEC
T ss_pred EEEcCCCCEEEEEEcc
Confidence 9999999977766654
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.94 E-value=3.1e-25 Score=216.54 Aligned_cols=288 Identities=12% Similarity=0.005 Sum_probs=190.8
Q ss_pred ceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCC---eeeeeeeccccCccCCCC
Q 014125 62 FLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGE---SVYDFCWFPHMSASDPTS 138 (430)
Q Consensus 62 ~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~ 138 (430)
.+.+++|+|||+++++ +.||+|++||+.+++....+ ..+.. .|.+++| ||||
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~-----------------~~~~~~~~~v~~~~~-------SpDg 72 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLI-----------------EGKKIESLRAIRYEI-------SPDR 72 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEE-----------------CTTTTTTTTCSEEEE-------CTTS
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEe-----------------ccccccccccceEEE-------CCCC
Confidence 3678999999998876 78999999999876432111 11111 4788888 8899
Q ss_pred ceEEEEeCC---------CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCccc
Q 014125 139 CVFASTTRD---------HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFE 209 (430)
Q Consensus 139 ~~l~~~~~d---------g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~ 209 (430)
++|++++.+ +.+.+||+.+++. ..+.... .+...+..++|+|||+.|+.+.++.|++||+..+....
T Consensus 73 ~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~--~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~~- 148 (723)
T 1xfd_A 73 EYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPE--VSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIR- 148 (723)
T ss_dssp SEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTT--CCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEE-
T ss_pred CEEEEEecCccceeecceeeEEEEECCCCce-EeccCCc--cccccccccEECCCCCEEEEEECCeEEEEECCCCceEE-
Confidence 999999775 7788999998876 2232221 12224778999999999997777999999997643211
Q ss_pred ccccccCC--CCCC---------CcceEEEEEcCCCCceEEEecCCC---------------------------------
Q 014125 210 KYSTLKGN--KEGQ---------AGIMSAIAFSPTHTGMLAIGSYSQ--------------------------------- 245 (430)
Q Consensus 210 ~~~~~~~~--~~~~---------~~~v~~~~~~~~~~~~l~~~~~dg--------------------------------- 245 (430)
........ ..++ ...+.+++|+| +++.|++++.++
T Consensus 149 ~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 227 (723)
T 1xfd_A 149 VVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP-DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPS 227 (723)
T ss_dssp EECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT-TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCE
T ss_pred EecCCCCCceECcccceeEEEEeccCcceEEECC-CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCe
Confidence 10000000 0000 11347899999 455666665432
Q ss_pred -eEEEEEcCCceeeEEeecc------ccCeEEEEEccCCCEEEEEec---CCCeEEEEeCCCCceEEEEeecccCCccce
Q 014125 246 -TSAIYREDNMELLYVLHGQ------EGGVTHVQFSRDGNYLYTGGR---KDPYILCWDLRKAVQVVYKLYRSSEHTNQR 315 (430)
Q Consensus 246 -~v~~~d~~~~~~~~~~~~~------~~~i~~~~~~~~~~~l~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v 315 (430)
.|++||+.+++....+..+ ...+..++|+|||++|++... .+..|++||+.++........ .+...+
T Consensus 228 ~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~---~~~~~~ 304 (723)
T 1xfd_A 228 ISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHED---ESEAWL 304 (723)
T ss_dssp EEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEE---ECSSCC
T ss_pred eEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEe---ccCCEE
Confidence 7999999988765556543 567899999999998877652 235799999988754322211 122222
Q ss_pred ----EEEEEcCCCCEEEE--EccCC------cEEEEE-cCCCCe--ecccccccCCeeE-EEEcCCCcEEEEeeCC---c
Q 014125 316 ----ILFDIEPSGRHLGT--GGQDG------LVHIYD-LQTGKW--ISGFQAAADTVNG-FSFHPFLPMAASSSGH---R 376 (430)
Q Consensus 316 ----~~~~~~~~~~~l~~--~~~dg------~i~vwd-~~~~~~--~~~~~~~~~~v~~-~~~~~~~~~l~s~~~d---~ 376 (430)
..++|+|+|+.|+. +..++ .|++|| ..+++. ...+..+...+.. ++|+|+|+.|+..+.+ +
T Consensus 305 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~ 384 (723)
T 1xfd_A 305 HRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPR 384 (723)
T ss_dssp CCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTT
T ss_pred eccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCc
Confidence 36899999997775 44566 577787 344441 4555544444554 6999999998876654 5
Q ss_pred eeeecC
Q 014125 377 RFPVDD 382 (430)
Q Consensus 377 ~~~vw~ 382 (430)
.+++|+
T Consensus 385 ~~~l~~ 390 (723)
T 1xfd_A 385 RRQLYS 390 (723)
T ss_dssp CCEEEE
T ss_pred ceEEEE
Confidence 666773
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=3.4e-24 Score=189.79 Aligned_cols=275 Identities=11% Similarity=0.154 Sum_probs=180.4
Q ss_pred cCCCceeEEEECcCCceEEEecCC-CeEEEEeCC--CCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCcc
Q 014125 58 IPNNFLKGIKWSPDGSSFLTSSED-KTLRIFSLP--ENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS 134 (430)
Q Consensus 58 ~h~~~v~~~~~sp~~~~l~s~~~d-g~v~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 134 (430)
.|...+.+++|+|+|++|++++.+ +.|.+|++. ++.. ...........+..++|
T Consensus 35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~------- 91 (343)
T 1ri6_A 35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL----------------TFAAESALPGSLTHIST------- 91 (343)
T ss_dssp ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE----------------EEEEEEECSSCCSEEEE-------
T ss_pred ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCce----------------eeccccccCCCCcEEEE-------
Confidence 467789999999999998888876 999999987 3321 01111122236777888
Q ss_pred CCCCceEEEEeC-CCcEEEEeccCC---ceeeeeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCCcc
Q 014125 135 DPTSCVFASTTR-DHPIHLWDATTG---LLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDF 208 (430)
Q Consensus 135 ~~~~~~l~~~~~-dg~i~vwd~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~ 208 (430)
+|++++|++++. ++.|.+||+..+ +....+... ..+.+++|+|++++++ ++ .++.|.+||+...+...
T Consensus 92 s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~------~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~ 165 (343)
T 1ri6_A 92 DHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL------DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLV 165 (343)
T ss_dssp CTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC------TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEE
T ss_pred cCCCCEEEEEecCCCeEEEEECCCCccccccccccCC------CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCcee
Confidence 778987776654 888999999533 333333222 2577899999998777 45 78999999997633211
Q ss_pred cccc--cccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCC--cee--eEEee---cc---ccCeEEEEEccC
Q 014125 209 EKYS--TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN--MEL--LYVLH---GQ---EGGVTHVQFSRD 276 (430)
Q Consensus 209 ~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~--~~~--~~~~~---~~---~~~i~~~~~~~~ 276 (430)
. .. ... ......+..++|+|++..+++++..++.|.+|++.. ++. ...+. .. ...+..++|+|+
T Consensus 166 ~-~~~~~~~---~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~d 241 (343)
T 1ri6_A 166 A-QDPAEVT---TVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPD 241 (343)
T ss_dssp E-EEEEEEE---CSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTT
T ss_pred e-ecccccc---cCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCC
Confidence 1 00 111 112346788999996555666667899999999953 332 22222 11 235668999999
Q ss_pred CCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEc-cCCcEEEEEc--CCCCe--ecccc
Q 014125 277 GNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGG-QDGLVHIYDL--QTGKW--ISGFQ 351 (430)
Q Consensus 277 ~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~--~~~~~--~~~~~ 351 (430)
|++|++++..++.|.+||+...............+. .+..++|+|+|++|++++ .++.|.+|++ .+++. +..+.
T Consensus 242 g~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~ 320 (343)
T 1ri6_A 242 GRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTET-QPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYA 320 (343)
T ss_dssp SSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSS-SCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEE
T ss_pred CCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCC-ccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccc
Confidence 998887665799999999983211111111112222 378899999999888887 5799999955 45543 33333
Q ss_pred cccCCeeEEEEcCCCc
Q 014125 352 AAADTVNGFSFHPFLP 367 (430)
Q Consensus 352 ~~~~~v~~~~~~~~~~ 367 (430)
. .....+++|.|+.+
T Consensus 321 ~-g~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 321 V-GQGPMWVVVNAHEG 335 (343)
T ss_dssp C-SSSCCEEEEEEEC-
T ss_pred c-CCCCeeEEEEcccC
Confidence 2 24567778877543
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.3e-24 Score=188.65 Aligned_cols=269 Identities=10% Similarity=0.063 Sum_probs=187.5
Q ss_pred ceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCC-eeeeeeeccccCccCCCCceE-EEEeCCCcE
Q 014125 73 SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGE-SVYDFCWFPHMSASDPTSCVF-ASTTRDHPI 150 (430)
Q Consensus 73 ~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~l-~~~~~dg~i 150 (430)
++|++++.++.|++||+.+++.... +...+.. .+..++| +|+++.+ +++..++.|
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~----------------~~~~~~~~~~~~~~~-------s~dg~~l~v~~~~~~~v 58 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKV----------------ITIADAGPTPMVPMV-------APGGRIAYATVNKSESL 58 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEE----------------EECTTCTTCCCCEEE-------CTTSSEEEEEETTTTEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEE----------------EEcCCCCCCccceEE-------cCCCCEEEEEeCCCCeE
Confidence 5789999999999999987643211 1111111 3667777 7788765 556668899
Q ss_pred EEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-------------cCCeEEEEEcCCCCCcccccccccCC
Q 014125 151 HLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-------------YNKSVRVFDVHRPGRDFEKYSTLKGN 217 (430)
Q Consensus 151 ~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-------------~d~~i~v~d~~~~~~~~~~~~~~~~~ 217 (430)
.+||+.+++.+..+.......+...+..++|+|++++++++ .++.|.+||+..... . ..+.
T Consensus 59 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~-~---~~~~-- 132 (337)
T 1pby_B 59 VKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR-R---KAFE-- 132 (337)
T ss_dssp EEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE-E---EEEE--
T ss_pred EEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcE-E---EEEe--
Confidence 99999999887766643211111245689999999888855 479999999975321 1 1111
Q ss_pred CCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCC---------
Q 014125 218 KEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDP--------- 288 (430)
Q Consensus 218 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~--------- 288 (430)
. ...+..++|+|+ ++.++++ ++.|.+||+.+++....+..+.. ...+.|+|+++.+++++..++
T Consensus 133 --~-~~~~~~~~~s~d-g~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~ 205 (337)
T 1pby_B 133 --A-PRQITMLAWARD-GSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTA 205 (337)
T ss_dssp --C-CSSCCCEEECTT-SSCEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEE
T ss_pred --C-CCCcceeEECCC-CCEEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeecc
Confidence 1 234677899995 4555555 68999999999988777764431 113378999987776653333
Q ss_pred --------------eEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccccccc
Q 014125 289 --------------YILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAA 354 (430)
Q Consensus 289 --------------~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 354 (430)
.|.+||+.+........ ..+...+..++|+|+|++++++ ++.|++||+.+++.+..+..+
T Consensus 206 ~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~---~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~- 279 (337)
T 1pby_B 206 RKDIDPADPTAYRTGLLTMDLETGEMAMREV---RIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP- 279 (337)
T ss_dssp BTTSCTTSGGGEEEEEEEEETTTCCEEEEEE---EECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-
T ss_pred ccccccccccccccceEEEeCCCCCceEeec---CCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-
Confidence 46899999875442222 3455678889999999999888 789999999999887777643
Q ss_pred CCeeEEEEcCCCcEEEEeeCCceeeecCC
Q 014125 355 DTVNGFSFHPFLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 355 ~~v~~~~~~~~~~~l~s~~~d~~~~vw~~ 383 (430)
..+.+++|+|++++|++++.++.+.+|+.
T Consensus 280 ~~~~~~~~s~dg~~l~~~~~~~~i~v~d~ 308 (337)
T 1pby_B 280 HSYYSVNVSTDGSTVWLGGALGDLAAYDA 308 (337)
T ss_dssp SCCCEEEECTTSCEEEEESBSSEEEEEET
T ss_pred CceeeEEECCCCCEEEEEcCCCcEEEEEC
Confidence 56789999999998888865544444443
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.7e-23 Score=182.87 Aligned_cols=240 Identities=15% Similarity=0.191 Sum_probs=161.5
Q ss_pred CeeeeeeeccccCccCCCCceEEEEeC---CCcEEEEeccCCceee--eeecccccccccceEEEEECCCCcEEE-EE-c
Q 014125 120 ESVYDFCWFPHMSASDPTSCVFASTTR---DHPIHLWDATTGLLRC--TYRAYDAVDEITAAFSVAFNPTGTKIF-AG-Y 192 (430)
Q Consensus 120 ~~v~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~vwd~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~ 192 (430)
.....++| +|+|+ |++++. ++.|.+|++.+++... .+..+. ..+..++|+|++++|+ ++ .
T Consensus 40 ~~p~~~a~-------spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~-----~~p~~~a~spdg~~l~~~~~~ 106 (347)
T 3hfq_A 40 QNPTYLAL-------SAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPG-----TPPAYVAVDEARQLVYSANYH 106 (347)
T ss_dssp SCCCCEEE-------CTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEES-----CCCSEEEEETTTTEEEEEETT
T ss_pred CCcceEEE-------ccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCC-----CCCEEEEECCCCCEEEEEeCC
Confidence 45566677 78898 555544 6899999998776332 222222 2677899999999887 44 6
Q ss_pred CCeEEEEEcCCCCCcccccccccCC-----CCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcC-Cceee--EEeecc
Q 014125 193 NKSVRVFDVHRPGRDFEKYSTLKGN-----KEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED-NMELL--YVLHGQ 264 (430)
Q Consensus 193 d~~i~v~d~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~-~~~~~--~~~~~~ 264 (430)
++.|.+|++...+.. ......... .......+.+++|+|++. ++++...++.|.+|++. +++.. ..+..+
T Consensus 107 ~~~v~v~~~~~~g~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~ 184 (347)
T 3hfq_A 107 KGTAEVMKIAADGAL-TLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVLTME 184 (347)
T ss_dssp TTEEEEEEECTTSCE-EEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEEEECC
T ss_pred CCEEEEEEeCCCCCe-eecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeeeEEcC
Confidence 799999999653321 111111100 011234588999999666 88888889999999998 44432 222222
Q ss_pred -ccCeEEEEEccCCCEEEEEecCCCeEEEEeCCC--CceEE-EEeecccC---CccceEEEEEcCCCCEEE-EEccCCcE
Q 014125 265 -EGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRK--AVQVV-YKLYRSSE---HTNQRILFDIEPSGRHLG-TGGQDGLV 336 (430)
Q Consensus 265 -~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~--~~~~~-~~~~~~~~---~~~~v~~~~~~~~~~~l~-~~~~dg~i 336 (430)
...+..++|+|+|+++++++..++.|.+|++.. +.... ........ ....+..++|+|+|++|+ +...++.|
T Consensus 185 ~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v 264 (347)
T 3hfq_A 185 AGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTL 264 (347)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEE
T ss_pred CCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEE
Confidence 236788999999998888765789999999875 32111 11111111 114588899999999874 55568999
Q ss_pred EEEEcCC---CCeecccccccCCeeEEEEcCCCcEEEEeeC
Q 014125 337 HIYDLQT---GKWISGFQAAADTVNGFSFHPFLPMAASSSG 374 (430)
Q Consensus 337 ~vwd~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 374 (430)
.+|++.. .+.+..+..+...+..++|+|+|++|++++.
T Consensus 265 ~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~ 305 (347)
T 3hfq_A 265 AVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQ 305 (347)
T ss_dssp EEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEET
T ss_pred EEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEc
Confidence 9999973 2445555556667899999999998888874
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.3e-24 Score=207.80 Aligned_cols=291 Identities=15% Similarity=0.161 Sum_probs=186.5
Q ss_pred eeEEEECcCCceEEEecCCCeEEEEeCCCCCCc-ccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceE
Q 014125 63 LKGIKWSPDGSSFLTSSEDKTLRIFSLPENGIS-YDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF 141 (430)
Q Consensus 63 v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 141 (430)
+..+.|+ |+.+++++.|+ | +||+.+++.. ..+..+......-.........+...|.+++| +|+ ..+
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~-------spd-~~~ 95 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLD-------AGR-GLV 95 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEE-------TTT-TEE
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEE-------CCC-CeE
Confidence 5668888 56677777787 8 9999887652 21111110000000000001112246888999 778 555
Q ss_pred EEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCC-----CCCcccccccccC
Q 014125 142 ASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHR-----PGRDFEKYSTLKG 216 (430)
Q Consensus 142 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~-----~~~~~~~~~~~~~ 216 (430)
+.+ .++.|++||+.+++....... .. .+.+++|+|+|+.|+.+.++.|++|++.. +.... .......
T Consensus 96 ~~~-~~~~i~~~d~~~~~~~~l~~~-~~-----~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~-~~~~~~~ 167 (706)
T 2z3z_A 96 VLF-TQGGLVGFDMLARKVTYLFDT-NE-----ETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIA-VTIDGTE 167 (706)
T ss_dssp EEE-ETTEEEEEETTTTEEEEEECC-TT-----CCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEE-SCSCCBT
T ss_pred EEE-ECCEEEEEECCCCceEEccCC-cc-----cccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEE-eccCCCC
Confidence 554 359999999998876544332 22 57789999999999988899999999976 32211 0000000
Q ss_pred -------CCCCCCcceEEEEEcCCCCceEEEec---------------------------------CCCeEEEEEcCCce
Q 014125 217 -------NKEGQAGIMSAIAFSPTHTGMLAIGS---------------------------------YSQTSAIYREDNME 256 (430)
Q Consensus 217 -------~~~~~~~~v~~~~~~~~~~~~l~~~~---------------------------------~dg~v~~~d~~~~~ 256 (430)
....+...+.++.|+| +++.|++++ .+..|++||+.+++
T Consensus 168 ~~~~g~~~~~ee~~~~~~~~~Sp-Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~ 246 (706)
T 2z3z_A 168 TLVYGQAVHQREFGIEKGTFWSP-KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGK 246 (706)
T ss_dssp TEEESSCCGGGCTTCCCSEEECT-TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTE
T ss_pred CeEcccchhhhhcCCCceEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCc
Confidence 0000112257899999 555677665 44789999999887
Q ss_pred eeEEee--ccccCeEEEEEccCCCEEEEEecCCC-----eEEEEeCCCCceEEEEee-cccCCccceEEEEEcC--CCCE
Q 014125 257 LLYVLH--GQEGGVTHVQFSRDGNYLYTGGRKDP-----YILCWDLRKAVQVVYKLY-RSSEHTNQRILFDIEP--SGRH 326 (430)
Q Consensus 257 ~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~~d~-----~i~i~d~~~~~~~~~~~~-~~~~~~~~v~~~~~~~--~~~~ 326 (430)
...... .|...+.+++|+|||+.|++++ .++ .|++||+.++........ ........+..++|+| +|++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~-~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~ 325 (706)
T 2z3z_A 247 TVYLQTGEPKEKFLTNLSWSPDENILYVAE-VNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQF 325 (706)
T ss_dssp EEECCCCSCTTCEEEEEEECTTSSEEEEEE-ECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEE
T ss_pred eEeeccCCCCceeEeeEEEECCCCEEEEEE-eCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEE
Confidence 654432 4667799999999999999877 565 899999998733222211 1111112345689999 9999
Q ss_pred EEEEccCCcEEEEEcC-CCCeecccccccCCeeE-EEEcCCCcEEEEeeCC
Q 014125 327 LGTGGQDGLVHIYDLQ-TGKWISGFQAAADTVNG-FSFHPFLPMAASSSGH 375 (430)
Q Consensus 327 l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~v~~-~~~~~~~~~l~s~~~d 375 (430)
+++++.||.++||.++ +++.+..+..|...+.. ++|+|+++.|+.++.+
T Consensus 326 l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~ 376 (706)
T 2z3z_A 326 IWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTE 376 (706)
T ss_dssp EEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESS
T ss_pred EEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecC
Confidence 9999999999999886 67777778777777877 7999999977666554
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.4e-23 Score=182.49 Aligned_cols=254 Identities=13% Similarity=0.125 Sum_probs=176.2
Q ss_pred cCCCceeEEEECcCCceEEEecC-CCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCC
Q 014125 58 IPNNFLKGIKWSPDGSSFLTSSE-DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP 136 (430)
Q Consensus 58 ~h~~~v~~~~~sp~~~~l~s~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 136 (430)
.+...+ +++|+|+|++|++++. ++.|.+||+.+++.. ......+..+..+++| +|
T Consensus 38 ~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~----------------~~~~~~~~~~~~~~~~-------s~ 93 (331)
T 3u4y_A 38 LGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK----------------VVAIQEGQSSMADVDI-------TP 93 (331)
T ss_dssp CCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE----------------EEEEEECSSCCCCEEE-------CT
T ss_pred ccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee----------------EEecccCCCCccceEE-------CC
Confidence 345556 9999999997666655 889999999876430 1111122234444777 78
Q ss_pred CCceEEEEeCCC---cEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE-cCCe-EEEEEcCCCCCcccc
Q 014125 137 TSCVFASTTRDH---PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKS-VRVFDVHRPGRDFEK 210 (430)
Q Consensus 137 ~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~-i~v~d~~~~~~~~~~ 210 (430)
++++++++..++ .|.+||+.+++.+..+.... .+.+++|+|++++++ ++ .++. |.+|++...+.....
T Consensus 94 dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~------~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~ 167 (331)
T 3u4y_A 94 DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPY------DAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDT 167 (331)
T ss_dssp TSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCT------TEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEE
T ss_pred CCCEEEEecCCCCcccEEEEECCCCCeEEEEECCC------CccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeec
Confidence 999998655553 89999999998877766533 567999999998665 44 5577 999999864432111
Q ss_pred cccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCcee---eEEeeccccCeEEEEEccCCCEEEEEecCC
Q 014125 211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL---LYVLHGQEGGVTHVQFSRDGNYLYTGGRKD 287 (430)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d 287 (430)
.... .........++|+|++..+++++..++.|.+||+.+++. +..+.. ...+..++|+|+|+++++++..+
T Consensus 168 ~~~~----~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~ 242 (331)
T 3u4y_A 168 GQEF----ISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-NNLPGTIVVSRDGSTVYVLTEST 242 (331)
T ss_dssp EEEE----ECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTTSSEEEEECSSE
T ss_pred CCcc----ccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-CCCCceEEECCCCCEEEEEEcCC
Confidence 1011 122344789999996655677777899999999998887 666663 46678999999999888877568
Q ss_pred CeEEEEeCCCCceEEEEeeccc--CCc---cceEEEEEcCCCCEEEEEc-cCCcEEEEEcCCCCe
Q 014125 288 PYILCWDLRKAVQVVYKLYRSS--EHT---NQRILFDIEPSGRHLGTGG-QDGLVHIYDLQTGKW 346 (430)
Q Consensus 288 ~~i~i~d~~~~~~~~~~~~~~~--~~~---~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~ 346 (430)
+.|.+||+.++........... .+. .....++|+|+|++|++++ .++.|.+||+.....
T Consensus 243 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 307 (331)
T 3u4y_A 243 VDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVV 307 (331)
T ss_dssp EEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEE
T ss_pred CEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcc
Confidence 8999999988754211111101 111 1224589999999886555 567999999986543
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-23 Score=203.22 Aligned_cols=282 Identities=10% Similarity=0.132 Sum_probs=192.0
Q ss_pred CceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCce
Q 014125 61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV 140 (430)
Q Consensus 61 ~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (430)
..|.+++|||| +.++.+. ++.|++||+.+++.. ....+...+.+++| +|||+.
T Consensus 82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~------------------~l~~~~~~~~~~~~-------SpdG~~ 134 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVT------------------YLFDTNEETASLDF-------SPVGDR 134 (706)
T ss_dssp CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEE------------------EEECCTTCCTTCEE-------CTTSSE
T ss_pred cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceE------------------EccCCcccccCCcC-------CCCCCE
Confidence 56999999999 5555553 589999999865321 12223456778888 889999
Q ss_pred EEEEeCCCcEEEEeccC-----Cceeeeeeccccc---------ccccceEEEEECCCCcEEEEE---------------
Q 014125 141 FASTTRDHPIHLWDATT-----GLLRCTYRAYDAV---------DEITAAFSVAFNPTGTKIFAG--------------- 191 (430)
Q Consensus 141 l~~~~~dg~i~vwd~~~-----~~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~l~~~--------------- 191 (430)
|+++ .++.|++|++.+ ++........... ++...+.++.|+|||++|+.+
T Consensus 135 la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~ 213 (706)
T 2z3z_A 135 VAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDY 213 (706)
T ss_dssp EEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEEC
T ss_pred EEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeecc
Confidence 9985 679999999998 7665443322210 011125789999999999844
Q ss_pred -------------------cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCC-----eE
Q 014125 192 -------------------YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ-----TS 247 (430)
Q Consensus 192 -------------------~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~v 247 (430)
.+..|++||+..+... .+ .....+...+.+++|+| +++.|++++.++ .|
T Consensus 214 ~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~-----~~-~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~v 286 (706)
T 2z3z_A 214 HPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTV-----YL-QTGEPKEKFLTNLSWSP-DENILYVAEVNRAQNECKV 286 (706)
T ss_dssp CSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEE-----EC-CCCSCTTCEEEEEEECT-TSSEEEEEEECTTSCEEEE
T ss_pred CCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceE-----ee-ccCCCCceeEeeEEEEC-CCCEEEEEEeCCCCCeeEE
Confidence 2367999999763210 11 11124566799999999 555677766664 89
Q ss_pred EEEEcCCceeeEEee-c-ccc---CeEEEEEcc--CCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEE-EE
Q 014125 248 AIYREDNMELLYVLH-G-QEG---GVTHVQFSR--DGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRIL-FD 319 (430)
Q Consensus 248 ~~~d~~~~~~~~~~~-~-~~~---~i~~~~~~~--~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~-~~ 319 (430)
++||+.+++....+. . +.. .+.+++|+| +|++++++. .|+.+++|++.........+ ..+...+.. ++
T Consensus 287 ~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~-~~g~~~l~~~~~~~~~~~~l---~~~~~~v~~~~~ 362 (706)
T 2z3z_A 287 NAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSR-RDGWNHLYLYDTTGRLIRQV---TKGEWEVTNFAG 362 (706)
T ss_dssp EEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEEC-TTSSCEEEEEETTSCEEEEC---CCSSSCEEEEEE
T ss_pred EEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEc-cCCccEEEEEECCCCEEEec---CCCCeEEEeeeE
Confidence 999999883333332 1 222 246789999 999888887 88999999876322333233 345556766 79
Q ss_pred EcCCCCEEEEEc-cCC----cEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCC----ceeeecCC
Q 014125 320 IEPSGRHLGTGG-QDG----LVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGH----RRFPVDDF 383 (430)
Q Consensus 320 ~~~~~~~l~~~~-~dg----~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d----~~~~vw~~ 383 (430)
|+|+|+.|+.++ .++ .|+.||+.+++ ...+. |...+.+++|+|+|++++..+.+ +.+.+|+.
T Consensus 363 ~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~ 433 (706)
T 2z3z_A 363 FDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNI 433 (706)
T ss_dssp ECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEES
T ss_pred EcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEEC
Confidence 999998776554 444 67778887766 33343 66789999999999988776543 45777754
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.3e-24 Score=215.93 Aligned_cols=302 Identities=13% Similarity=0.073 Sum_probs=215.3
Q ss_pred eeecccCCCce-------eEEEECcCCceEEEecCC------CeEEEEeCCCCCCcccccccc--c--------------
Q 014125 53 FRTSSIPNNFL-------KGIKWSPDGSSFLTSSED------KTLRIFSLPENGISYDVNACS--L-------------- 103 (430)
Q Consensus 53 ~~~~~~h~~~v-------~~~~~sp~~~~l~s~~~d------g~v~iw~~~~~~~~~~~~~~~--~-------------- 103 (430)
.+.+..|...+ .+++|||||+.+++++.+ ..|.+|++.++....-..... .
T Consensus 92 ~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~ 171 (1045)
T 1k32_A 92 IKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTF 171 (1045)
T ss_dssp EEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCS
T ss_pred eEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCC
Confidence 34677888888 999999999977877754 357788876554211100000 0
Q ss_pred -----------------ccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccC-Cceeeeee
Q 014125 104 -----------------AKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATT-GLLRCTYR 165 (430)
Q Consensus 104 -----------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~ 165 (430)
..... ........|...+.++.| +++ .++++++.++.+.+|.+.. +.....+.
T Consensus 172 ~~~~~~~~~g~~~~~lw~~~~~-~~~~~l~~~~~~v~~~~~-------s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~ 242 (1045)
T 1k32_A 172 ELPHWKGYRGGTRGKIWIEVNS-GAFKKIVDMSTHVSSPVI-------VGH-RIYFITDIDGFGQIYSTDLDGKDLRKHT 242 (1045)
T ss_dssp CCTTSTTCCSTTCCEEEEEEET-TEEEEEECCSSCCEEEEE-------ETT-EEEEEECTTSSCEEEEEETTSCSCEECC
T ss_pred CccccccccCCCcCCEEEECCC-CCeEECcCCCCcccceEE-------eCC-EEEEEEeccCceEEEEEeCCCCcceEec
Confidence 00000 011112456677888888 445 5677888899999998754 33333333
Q ss_pred cccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccCC-------CCCCCcceEEEEEc-CCCCce
Q 014125 166 AYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGN-------KEGQAGIMSAIAFS-PTHTGM 237 (430)
Q Consensus 166 ~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~-------~~~~~~~v~~~~~~-~~~~~~ 237 (430)
.+. .+...+|+|+|+.|+.+.++.|++|++... ... .+... ...+...+.+++|+ | ++..
T Consensus 243 ~~~------~~~~~~~SpDG~~la~~~~~~i~~~d~~~~--~l~---~l~~~~~~~~~~~~~~~~~v~~~~~S~p-dG~~ 310 (1045)
T 1k32_A 243 SFT------DYYPRHLNTDGRRILFSKGGSIYIFNPDTE--KIE---KIEIGDLESPEDRIISIPSKFAEDFSPL-DGDL 310 (1045)
T ss_dssp CCC------SSCEEEEEESSSCEEEEETTEEEEECTTTC--CEE---ECCCCCCCBCCSEEEECGGGGEEEEEEC-GGGC
T ss_pred CCC------CcceeeEcCCCCEEEEEeCCEEEEecCCce--Eee---eeccCcccccccccccccccceeeecCC-CCCE
Confidence 322 345679999999999778999999998321 111 11110 01134468899999 9 5556
Q ss_pred EEEecCCCeEEEEEcCCceeeEEeecccc-CeEEEEEccCCCEEEEEecCCCeEE-EEeCCCCceEEEEeecccCCccce
Q 014125 238 LAIGSYSQTSAIYREDNMELLYVLHGQEG-GVTHVQFSRDGNYLYTGGRKDPYIL-CWDLRKAVQVVYKLYRSSEHTNQR 315 (430)
Q Consensus 238 l~~~~~dg~v~~~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~~d~~i~-i~d~~~~~~~~~~~~~~~~~~~~v 315 (430)
+++++ ++.|++|+..+++... +..|.. .+..++|+ +|+.|++++ .++.+. +||+...... .+ ..+...+
T Consensus 311 la~~~-~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~s-dg~~l~~~s-~~~~l~~~~d~~~~~~~--~l---~~~~~~~ 381 (1045)
T 1k32_A 311 IAFVS-RGQAFIQDVSGTYVLK-VPEPLRIRYVRRGGD-TKVAFIHGT-REGDFLGIYDYRTGKAE--KF---EENLGNV 381 (1045)
T ss_dssp EEEEE-TTEEEEECTTSSBEEE-CSCCSCEEEEEECSS-SEEEEEEEE-TTEEEEEEEETTTCCEE--EC---CCCCCSE
T ss_pred EEEEE-cCEEEEEcCCCCceEE-ccCCCcceEEeeeEc-CCCeEEEEE-CCCceEEEEECCCCCce--Ee---cCCccce
Confidence 66666 8899999998776543 555666 89999999 999999998 688888 9999876422 22 2566789
Q ss_pred EEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCc----------eeeecCCC
Q 014125 316 ILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHR----------RFPVDDFE 384 (430)
Q Consensus 316 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~----------~~~vw~~~ 384 (430)
..++|+|+|++|++++.++.|++||+.+++....+.+|...+.+++|+|+|++|++++.++ .+++|+..
T Consensus 382 ~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~ 460 (1045)
T 1k32_A 382 FAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDME 460 (1045)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETT
T ss_pred eeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECC
Confidence 9999999999999999999999999999998887778989999999999999998887644 88888653
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-23 Score=206.02 Aligned_cols=280 Identities=11% Similarity=0.108 Sum_probs=194.9
Q ss_pred ceeEEEECcCCceEEEecCCCeEEEEeCCCC---CCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCC
Q 014125 62 FLKGIKWSPDGSSFLTSSEDKTLRIFSLPEN---GISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS 138 (430)
Q Consensus 62 ~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 138 (430)
.|.+++|||||++|++++. +.|++||+.++ ... ....+...+..++| +|||
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~------------------~l~~~~~~~~~~~~-------SPDG 163 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR------------------QLTHGEGFATDAKL-------SPKG 163 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCC------------------BCCCSSSCEEEEEE-------CTTS
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEE------------------EcccCCcccccccC-------CCCC
Confidence 4889999999999999887 89999999865 211 12223467889999 8899
Q ss_pred ceEEEEeCCCcEEEEeccCCceeeeeeccccc-----------ccccceEEEEECCCCcEEEE-EcCC------------
Q 014125 139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDAV-----------DEITAAFSVAFNPTGTKIFA-GYNK------------ 194 (430)
Q Consensus 139 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-----------~~~~~v~~~~~~~~~~~l~~-~~d~------------ 194 (430)
++|++++. +.|++||+.+++........... +....+.+++|+|||++|+. +.|+
T Consensus 164 ~~la~~~~-~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~ 242 (741)
T 2ecf_A 164 GFVSFIRG-RNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVY 242 (741)
T ss_dssp SEEEEEET-TEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEEC
T ss_pred CEEEEEeC-CcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCC
Confidence 99998874 58999999988765543322210 00012468999999998884 4444
Q ss_pred ---------------------eEEEEEcCC-CCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEec-----CCCeE
Q 014125 195 ---------------------SVRVFDVHR-PGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS-----YSQTS 247 (430)
Q Consensus 195 ---------------------~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-----~dg~v 247 (430)
.|++||+.. +... .+. ....+...+..++| |++ ..|++++ .+..|
T Consensus 243 p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~-----~~~-~~~~~~~~~~~~~~-pDg-~~l~~~~~~~~~~~~~i 314 (741)
T 2ecf_A 243 ADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQ-----WID-LGKEQDIYLARVNW-RDP-QHLSFQRQSRDQKKLDL 314 (741)
T ss_dssp SSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCE-----EEC-CCSCSSEEEEEEEE-EET-TEEEEEEEETTSSEEEE
T ss_pred CCcccceEeecCCCCCCCCeeEEEEEECCCCCceE-----Eec-CCCCcceEEEEEEe-CCC-CEEEEEEecccCCeEEE
Confidence 788888865 4321 111 01246678999999 955 4555443 35789
Q ss_pred EEEEcCCceeeEEeecccc----CeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEE-EEcC
Q 014125 248 AIYREDNMELLYVLHGQEG----GVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILF-DIEP 322 (430)
Q Consensus 248 ~~~d~~~~~~~~~~~~~~~----~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~-~~~~ 322 (430)
++||+.+++....+..+.. .+..++|+|+|+++++++ .||.+++|.+..... ...+ ..+...+..+ .|+|
T Consensus 315 ~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~-~~g~~~l~~~~~~~~-~~~l---~~~~~~v~~~~~~s~ 389 (741)
T 2ecf_A 315 VEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSE-RTGFQHLYRIDSKGK-AAAL---THGNWSVDELLAVDE 389 (741)
T ss_dssp EEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEEC-TTSSCEEEEECSSSC-EEES---CCSSSCEEEEEEEET
T ss_pred EEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEec-CCCccEEEEEcCCCC-eeee---eecceEEEeEeEEeC
Confidence 9999999887776665543 456899999999777777 899888887653223 3233 3456667776 5999
Q ss_pred CCCEEE-EEccCC--cEEEEEcCC-CCeecccccccCCeeEEEEcCCCcEEEEeeCC----ceeeecC
Q 014125 323 SGRHLG-TGGQDG--LVHIYDLQT-GKWISGFQAAADTVNGFSFHPFLPMAASSSGH----RRFPVDD 382 (430)
Q Consensus 323 ~~~~l~-~~~~dg--~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d----~~~~vw~ 382 (430)
+|+.|+ +++.++ .++||++.. +.....+.. ...+..++|+|++++|+....+ ..+.+++
T Consensus 390 dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~ 456 (741)
T 2ecf_A 390 KAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFR 456 (741)
T ss_dssp TTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEE
T ss_pred CCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEE
Confidence 998765 555555 899999874 555566654 5678899999999988776443 3455553
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-23 Score=212.96 Aligned_cols=286 Identities=14% Similarity=0.063 Sum_probs=213.0
Q ss_pred eecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCc
Q 014125 54 RTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (430)
Q Consensus 54 ~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (430)
..+.+|.+.+.++.|+++ .++++++.|+.++||.+..... .......+ ..+...+|
T Consensus 197 ~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~----------------~~~~l~~~-~~~~~~~~------ 252 (1045)
T 1k32_A 197 KKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGK----------------DLRKHTSF-TDYYPRHL------ 252 (1045)
T ss_dssp EEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSC----------------SCEECCCC-CSSCEEEE------
T ss_pred EECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCC----------------cceEecCC-CCcceeeE------
Confidence 345789999999999998 6777888899999998653110 00011112 23455677
Q ss_pred cCCCCceEEEEeCCCcEEEEeccCCceeeeeecccc------cccccceEEEEEC-CCCcEEEEEcCCeEEEEEcCCCCC
Q 014125 134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDA------VDEITAAFSVAFN-PTGTKIFAGYNKSVRVFDVHRPGR 206 (430)
Q Consensus 134 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~------~~~~~~v~~~~~~-~~~~~l~~~~d~~i~v~d~~~~~~ 206 (430)
+|+|+.|+++ .++.|.+|++...+.. .+..... ..+...+.+++|+ |+|+.|+.+.++.|.+|++.....
T Consensus 253 -SpDG~~la~~-~~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~ 329 (1045)
T 1k32_A 253 -NTDGRRILFS-KGGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYV 329 (1045)
T ss_dssp -EESSSCEEEE-ETTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETTEEEEECTTSSBE
T ss_pred -cCCCCEEEEE-eCCEEEEecCCceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEEcCEEEEEcCCCCce
Confidence 6789988887 4889999999544333 3332110 0122357899999 999999877699999999865311
Q ss_pred cccccccccCCCCCCCc-ceEEEEEcCCCCceEEEecCCCeEE-EEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEe
Q 014125 207 DFEKYSTLKGNKEGQAG-IMSAIAFSPTHTGMLAIGSYSQTSA-IYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGG 284 (430)
Q Consensus 207 ~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~dg~v~-~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 284 (430)
.. ...+.. .+..++|+ ++ ..++.++.++.+. +||+.+++... +..|...+..++|+|+|++|++++
T Consensus 330 -----~~----~~~~~~~~~~~~~~s-dg-~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG~~la~~~ 397 (1045)
T 1k32_A 330 -----LK----VPEPLRIRYVRRGGD-TK-VAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNGKFAVVAN 397 (1045)
T ss_dssp -----EE----CSCCSCEEEEEECSS-SE-EEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECTTSSEEEEEE
T ss_pred -----EE----ccCCCcceEEeeeEc-CC-CeEEEEECCCceEEEEECCCCCceE-ecCCccceeeeEECCCCCEEEEEC
Confidence 11 234455 78999999 54 4666666688898 99998776544 337778899999999999999999
Q ss_pred cCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCC----------cEEEEEcCCCCeeccccccc
Q 014125 285 RKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDG----------LVHIYDLQTGKWISGFQAAA 354 (430)
Q Consensus 285 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----------~i~vwd~~~~~~~~~~~~~~ 354 (430)
.++.|++||+.++.... .. ..|...+..++|+|||++|++++.++ .|++||+.+++ +..+..|.
T Consensus 398 -~~~~v~~~d~~tg~~~~-~~---~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~ 471 (1045)
T 1k32_A 398 -DRFEIMTVDLETGKPTV-IE---RSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTEN 471 (1045)
T ss_dssp -TTSEEEEEETTTCCEEE-EE---ECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSS
T ss_pred -CCCeEEEEECCCCceEE-ec---cCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCC
Confidence 89999999998875432 21 25677788999999999999887654 89999999887 66677788
Q ss_pred CCeeEEEEcCCCcEEEEeeCCceeeecCCC
Q 014125 355 DTVNGFSFHPFLPMAASSSGHRRFPVDDFE 384 (430)
Q Consensus 355 ~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~ 384 (430)
..+..++|+|+|++|++++.++...+|+..
T Consensus 472 ~~~~~~~~spdG~~l~~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 472 SHDYAPAFDADSKNLYYLSYRSLDPSPDRV 501 (1045)
T ss_dssp SBEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred cccCCceEcCCCCEEEEEecccCCcCcchh
Confidence 889999999999999999998888877643
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-23 Score=181.65 Aligned_cols=239 Identities=13% Similarity=0.077 Sum_probs=171.2
Q ss_pred ecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCC-CCCcccccccccccccCcccceeeecCCCeeeeeeeccccCc
Q 014125 55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPE-NGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (430)
Q Consensus 55 ~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (430)
.+..|...|.+++|+|+|++|++++ ++.|++||+.+ ++.... ....+...+.+++|
T Consensus 36 ~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~----------------~~~~~~~~~~~~~~------ 92 (297)
T 2ojh_A 36 VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKV----------------DTGFATICNNDHGI------ 92 (297)
T ss_dssp EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEEC----------------CCTTCCCBCSCCEE------
T ss_pred eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEe----------------ccccccccccceEE------
Confidence 3456888999999999999999987 78999999987 532111 11112356788888
Q ss_pred cCCCCceEEEEe--CCCcEEEEec--cCCceeeeeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCCc
Q 014125 134 SDPTSCVFASTT--RDHPIHLWDA--TTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRD 207 (430)
Q Consensus 134 ~~~~~~~l~~~~--~dg~i~vwd~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~ 207 (430)
+|++++|++++ .++...+|.+ .+++ ...+.... .+..++|+|+++.|+ ++ .++.+++|+++.....
T Consensus 93 -spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~------~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~ 164 (297)
T 2ojh_A 93 -SPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL------PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV 164 (297)
T ss_dssp -CTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSS------SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC
T ss_pred -CCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCC------CccceEECCCCCEEEEEECCCCceEEEEEECCCCc
Confidence 77999999998 4455666655 4443 22222221 577899999999887 44 7899999997643222
Q ss_pred ccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcC-CceeeEEeeccccCeEEEEEccCCCEEEEEecC
Q 014125 208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED-NMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRK 286 (430)
Q Consensus 208 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 286 (430)
.. ....+...+.+++|+|++..+++++..++.+++|++. .+.....+..|...+.+++|+|+|++|++++ .
T Consensus 165 ~~-------~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~-~ 236 (297)
T 2ojh_A 165 ET-------RLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVS-Y 236 (297)
T ss_dssp EE-------ECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEE-E
T ss_pred ce-------EcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEE-c
Confidence 11 1234556799999999555444455568999999886 4556667777778899999999999998887 4
Q ss_pred C-----------CeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCC
Q 014125 287 D-----------PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDG 334 (430)
Q Consensus 287 d-----------~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 334 (430)
+ +.|++||+.+...... .....+...+..++|+|+|++|++++.+.
T Consensus 237 ~~~~~~~~~~~~~~l~~~d~~~~~~~~~--~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 237 DADVFDHPRDLDVRVQLMDMDGGNVETL--FDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp ETTCCSCCSSEEEEEEEEETTSCSCEEE--EEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred CCCCCcccccCceEEEEEecCCCCceee--eccCCCCcccccceECCCCCEEEEEEecc
Confidence 4 5699999987653321 22235667788899999999998887664
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.92 E-value=9.8e-24 Score=200.47 Aligned_cols=268 Identities=13% Similarity=0.049 Sum_probs=188.0
Q ss_pred CCceeEEEECcCCceEEEecC-CCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCC
Q 014125 60 NNFLKGIKWSPDGSSFLTSSE-DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS 138 (430)
Q Consensus 60 ~~~v~~~~~sp~~~~l~s~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 138 (430)
..+|++++|+|||+.||+++. ||+++||+++++.. ..+...+...+..++| +||
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~-----------------~~lt~~~~~~~~~~~~-------spd- 75 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET-----------------VKLNREPINSVLDPHY-------GVG- 75 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-----------------EECCSSCCSEECEECT-------TCS-
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc-----------------EeeecccccccccccC-------CCC-
Confidence 446999999999999999887 99999999754321 1111222257888999 667
Q ss_pred ceEEEEeC---CCcEEEEeccC--CceeeeeecccccccccceEEEEECCCCcE--EEEEcCCeEEEEEcCCCCCccccc
Q 014125 139 CVFASTTR---DHPIHLWDATT--GLLRCTYRAYDAVDEITAAFSVAFNPTGTK--IFAGYNKSVRVFDVHRPGRDFEKY 211 (430)
Q Consensus 139 ~~l~~~~~---dg~i~vwd~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~d~~i~v~d~~~~~~~~~~~ 211 (430)
+++++++. +....+|.+.. ......+.... .+...+|+|+++. ++++.++.+.+||+.++.. .
T Consensus 76 ~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l~~~~------~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~--~-- 145 (582)
T 3o4h_A 76 RVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVK------PMRILSGVDTGEAVVFTGATEDRVALYALDGGGL--R-- 145 (582)
T ss_dssp EEEEEEECSTTSCCEEEEEEETTSTTCCEECTTSC------SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEE--E--
T ss_pred eEEEEeccCCCCcceEEEEEeccCCCccccccCCC------CceeeeeCCCCCeEEEEecCCCCceEEEccCCcE--E--
Confidence 67777765 45566665543 22112222221 2335577777753 4455666677999976421 1
Q ss_pred ccccCCCCCCCcceEEEEEcCCCCceEEEecCC----CeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCC
Q 014125 212 STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS----QTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKD 287 (430)
Q Consensus 212 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d 287 (430)
.+. .+.. .+++|+| +++.+++++.+ +.|++||+.+++.. .+..|.+.+..++|+|||+.|+++. .+
T Consensus 146 -~l~----~~~~--~~~~~sp-DG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~-~~ 215 (582)
T 3o4h_A 146 -ELA----RLPG--FGFVSDI-RGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLE-TA 215 (582)
T ss_dssp -EEE----EESS--CEEEEEE-ETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEE-CS
T ss_pred -Eee----cCCC--ceEEECC-CCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEcc-CC
Confidence 111 1111 7889999 56677777666 78999999887765 5667888899999999999999776 78
Q ss_pred C--eEEEEeCCCCceEEEEeecccCCccceEEEE--------EcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCe
Q 014125 288 P--YILCWDLRKAVQVVYKLYRSSEHTNQRILFD--------IEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTV 357 (430)
Q Consensus 288 ~--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v 357 (430)
+ .|++||+.++... .. ..+...+..++ |+|||.++++++.|+.+++|++ ++... .+.+.|
T Consensus 216 ~~~~i~~~d~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v 285 (582)
T 3o4h_A 216 REARLVTVDPRDGSVE--DL---ELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE---APQGNH 285 (582)
T ss_dssp SCEEEEEECTTTCCEE--EC---CCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CCSSEE
T ss_pred CeeEEEEEcCCCCcEE--Ec---cCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cCCCce
Confidence 8 8999999887543 22 34444555555 9999999999999999999999 66554 234678
Q ss_pred eEEEEcCCCcEEEEeeCCc---eeeecCC
Q 014125 358 NGFSFHPFLPMAASSSGHR---RFPVDDF 383 (430)
Q Consensus 358 ~~~~~~~~~~~l~s~~~d~---~~~vw~~ 383 (430)
.+++|+ +++++++++.+. .+.+|+.
T Consensus 286 ~~~~~s-dg~~l~~~s~~~~p~~l~~~d~ 313 (582)
T 3o4h_A 286 GRVVLW-RGKLVTSHTSLSTPPRIVSLPS 313 (582)
T ss_dssp EEEEEE-TTEEEEEEEETTEEEEEEEETT
T ss_pred EEEEec-CCEEEEEEcCCCCCCeEEEEcC
Confidence 999999 999999888764 3666654
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.92 E-value=7.9e-23 Score=199.52 Aligned_cols=291 Identities=10% Similarity=0.037 Sum_probs=188.7
Q ss_pred eecccCCC---ceeEEEECcCCceEEEecCC---------CeEEEEeCCCCCCcccccccccccccCcccceeeecCCCe
Q 014125 54 RTSSIPNN---FLKGIKWSPDGSSFLTSSED---------KTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGES 121 (430)
Q Consensus 54 ~~~~~h~~---~v~~~~~sp~~~~l~s~~~d---------g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (430)
..+.+|.. .|.+++|||||++||+++.+ +.+.+||+.+++. ..+.. ...+...
T Consensus 51 ~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~--------------~~~~~~~ 115 (723)
T 1xfd_A 51 VLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDP--------------PEVSNAK 115 (723)
T ss_dssp EEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCC--------------TTCCSCC
T ss_pred EEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccC--------------Ccccccc
Confidence 34455554 49999999999999999764 7888999987643 11100 0112234
Q ss_pred eeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccc----c---------ccceEEEEECCCCcEE
Q 014125 122 VYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVD----E---------ITAAFSVAFNPTGTKI 188 (430)
Q Consensus 122 v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~----~---------~~~v~~~~~~~~~~~l 188 (430)
+..++| ||||+.|+.++. +.|++||+.+++.......+.... . ...+.+++|+|||+.|
T Consensus 116 ~~~~~~-------SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~l 187 (723)
T 1xfd_A 116 LQYAGW-------GPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRL 187 (723)
T ss_dssp CSBCCB-------CSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEE
T ss_pred ccccEE-------CCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEE
Confidence 777888 889999999886 789999999987766554322100 0 0123789999999998
Q ss_pred EE-EcCC----------------------------------eEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCC
Q 014125 189 FA-GYNK----------------------------------SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPT 233 (430)
Q Consensus 189 ~~-~~d~----------------------------------~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 233 (430)
+. +.++ .|++||+..+.... .+. .......+...+..++|+|+
T Consensus 188 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~-~l~-~~~~~~~~~~~~~~~~~SpD 265 (723)
T 1xfd_A 188 AYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDL-EMM-PPDDPRMREYYITMVKWATS 265 (723)
T ss_dssp EEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCE-ECC-CCCCGGGSSEEEEEEEESSS
T ss_pred EEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeE-Eee-CCccCCCccceeEEEEEeCC
Confidence 84 3332 78889887643211 100 00011123567899999995
Q ss_pred CCceEEEecC----CCeEEEEEcCCceeeEEeecc-ccCe----EEEEEccCCCEEEEE-ecCCC------eEEEEe-CC
Q 014125 234 HTGMLAIGSY----SQTSAIYREDNMELLYVLHGQ-EGGV----THVQFSRDGNYLYTG-GRKDP------YILCWD-LR 296 (430)
Q Consensus 234 ~~~~l~~~~~----dg~v~~~d~~~~~~~~~~~~~-~~~i----~~~~~~~~~~~l~~~-~~~d~------~i~i~d-~~ 296 (430)
++++++... +..|++||+.+++....+..+ ...+ ..++|+|+|+.|+.. +..++ .|.+|| ..
T Consensus 266 -g~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~ 344 (723)
T 1xfd_A 266 -TKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQP 344 (723)
T ss_dssp -SEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSC
T ss_pred -CeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccC
Confidence 456655543 367999999988876655433 3333 378999999987764 43667 577777 33
Q ss_pred CCce-EEEEeecccCCccceE-EEEEcCCCCEEEEEccC---CcEEEEEcCCCC--eeccccc---ccCCeeEEEEcCCC
Q 014125 297 KAVQ-VVYKLYRSSEHTNQRI-LFDIEPSGRHLGTGGQD---GLVHIYDLQTGK--WISGFQA---AADTVNGFSFHPFL 366 (430)
Q Consensus 297 ~~~~-~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~--~~~~~~~---~~~~v~~~~~~~~~ 366 (430)
.... ....+ ......+. .++|+|+|+.|+..+.+ +.+++|++.... ....+.. |...+..++|+|+|
T Consensus 345 ~~~~~~~~~l---~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg 421 (723)
T 1xfd_A 345 NSSNDNIQSI---TSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSM 421 (723)
T ss_dssp CSSSCCCCBS---CCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTS
T ss_pred CCCccceeEe---ecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCC
Confidence 3320 01111 12223344 36999999998765554 789999987432 3334443 56678999999999
Q ss_pred cEEEEee
Q 014125 367 PMAASSS 373 (430)
Q Consensus 367 ~~l~s~~ 373 (430)
++|+...
T Consensus 422 ~~l~~~~ 428 (723)
T 1xfd_A 422 DFFLLKC 428 (723)
T ss_dssp SEEEEEC
T ss_pred CEEEEEc
Confidence 9877654
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.9e-21 Score=173.50 Aligned_cols=285 Identities=12% Similarity=0.115 Sum_probs=182.8
Q ss_pred CCceEEEec----CCCeEEEEeCCC--CCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEE
Q 014125 71 DGSSFLTSS----EDKTLRIFSLPE--NGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFAST 144 (430)
Q Consensus 71 ~~~~l~s~~----~dg~v~iw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 144 (430)
...+++.|+ .++.|.+|+++. +.. ...... +......++| +|++++|+++
T Consensus 12 ~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~----------------~~~~~~-~~~~p~~l~~-------spdg~~l~~~ 67 (361)
T 3scy_A 12 SELTMLVGTYTSGNSKGIYTFRFNEETGES----------------LPLSDA-EVANPSYLIP-------SADGKFVYSV 67 (361)
T ss_dssp GEEEEEEEECCSSSCCEEEEEEEETTTCCE----------------EEEEEE-ECSCCCSEEE-------CTTSSEEEEE
T ss_pred CceEEEEEeccCCCCCCEEEEEEeCCCCCE----------------EEeecc-cCCCCceEEE-------CCCCCEEEEE
Confidence 334555553 467899997753 211 111111 4455666777 8899999999
Q ss_pred eCC----CcEEEEeccC--CceeeeeecccccccccceEEEEECCCCcEEEE-E-cCCeEEEEEcCCCCCccccccccc-
Q 014125 145 TRD----HPIHLWDATT--GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-G-YNKSVRVFDVHRPGRDFEKYSTLK- 215 (430)
Q Consensus 145 ~~d----g~i~vwd~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~-~d~~i~v~d~~~~~~~~~~~~~~~- 215 (430)
+.+ +.|.+|++.. ++......... ....+..+++ +++++++ + .++.|.+|++...+..........
T Consensus 68 ~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~---~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~ 142 (361)
T 3scy_A 68 NEFSKDQAAVSAFAFDKEKGTLHLLNTQKT---MGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEF 142 (361)
T ss_dssp ECCSSTTCEEEEEEEETTTTEEEEEEEEEC---SSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEEC
T ss_pred EccCCCCCcEEEEEEeCCCCcEEEeeEecc---CCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEc
Confidence 886 7999999876 43322222111 1114566777 7777774 4 688999999976433211111000
Q ss_pred -C----CCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCcee------e-------EEeeccccCeEEEEEccCC
Q 014125 216 -G----NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL------L-------YVLHGQEGGVTHVQFSRDG 277 (430)
Q Consensus 216 -~----~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~------~-------~~~~~~~~~i~~~~~~~~~ 277 (430)
. ....+...+.+++|+|++..+++++..++.|.+|++..... + .....+...+..++|+|+|
T Consensus 143 ~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg 222 (361)
T 3scy_A 143 KGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDG 222 (361)
T ss_dssp CCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTS
T ss_pred cCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCC
Confidence 0 01122344688999996555666666789999998875431 1 1122234567899999999
Q ss_pred CEEEEEecCCCeEEEEeCCCCceEE-EEeecccCCccceEEEEEcCCCCEEEEEccC--CcEEEEEcC--CCC--eeccc
Q 014125 278 NYLYTGGRKDPYILCWDLRKAVQVV-YKLYRSSEHTNQRILFDIEPSGRHLGTGGQD--GLVHIYDLQ--TGK--WISGF 350 (430)
Q Consensus 278 ~~l~~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~vwd~~--~~~--~~~~~ 350 (430)
+++++++..++.|.+||+.++.... ........+......++|+|+|++|+++..+ +.|.+|+++ +++ .+..+
T Consensus 223 ~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~ 302 (361)
T 3scy_A 223 KFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQ 302 (361)
T ss_dssp SEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEE
T ss_pred CEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEe
Confidence 9988887568999999998653221 1222223334556899999999998766654 889999996 455 34444
Q ss_pred ccccCCeeEEEEcCCCcEEEEeeCCceeeecCCCccccccCCCcEEEEeec
Q 014125 351 QAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFEDLHLSGDENCVSVWSFL 401 (430)
Q Consensus 351 ~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~ 401 (430)
.. ...+.+++|+|+|++|++++. .++.|.+|++.
T Consensus 303 ~~-g~~~~~~~~spdg~~l~~~~~----------------~~~~v~v~~~d 336 (361)
T 3scy_A 303 LT-GIHPRNFIITPNGKYLLVACR----------------DTNVIQIFERD 336 (361)
T ss_dssp EC-SSCCCEEEECTTSCEEEEEET----------------TTTEEEEEEEC
T ss_pred cC-CCCCceEEECCCCCEEEEEEC----------------CCCCEEEEEEE
Confidence 43 457889999999998888873 35677776655
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.92 E-value=6e-22 Score=176.69 Aligned_cols=279 Identities=14% Similarity=0.144 Sum_probs=175.9
Q ss_pred CCCceeEEEECcCCceEEEecCC----CeEEEEeCCCC-CCcccccccccccccCcccceeeecCCCeeeeeeeccccCc
Q 014125 59 PNNFLKGIKWSPDGSSFLTSSED----KTLRIFSLPEN-GISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (430)
Q Consensus 59 h~~~v~~~~~sp~~~~l~s~~~d----g~v~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (430)
|...+..++|+|||++|++++.+ +.|.+|+++.. .... .......++.....+++
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~--------------~~~~~~~~~~~p~~~~~------ 107 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLH--------------LLNTQKTMGADPCYLTT------ 107 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEE--------------EEEEEECSSSCEEEEEE------
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEE--------------EeeEeccCCCCcEEEEE------
Confidence 66778899999999999999886 79999988642 1000 00011112233444444
Q ss_pred cCCCCceEEEEe-CCCcEEEEeccCCceeeeeec---ccc------cccccceEEEEECCCCcEEE-EE-cCCeEEEEEc
Q 014125 134 SDPTSCVFASTT-RDHPIHLWDATTGLLRCTYRA---YDA------VDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDV 201 (430)
Q Consensus 134 ~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~---~~~------~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~v~d~ 201 (430)
++++|++++ .++.|.+|++.....+..... +.. ......+.+++|+|++++++ ++ .++.|.+|++
T Consensus 108 ---dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~ 184 (361)
T 3scy_A 108 ---NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNI 184 (361)
T ss_dssp ---CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred ---CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEE
Confidence 566666665 578999999975433322111 100 01122457899999999776 44 5789999999
Q ss_pred CCCCC----c-ccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCcee--eEEee---ccccCeEEE
Q 014125 202 HRPGR----D-FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL--LYVLH---GQEGGVTHV 271 (430)
Q Consensus 202 ~~~~~----~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~--~~~~~---~~~~~i~~~ 271 (430)
..... . +................+..++|+|++..++++...++.|.+|++.+++. +..+. .+......+
T Consensus 185 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i 264 (361)
T 3scy_A 185 NPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDI 264 (361)
T ss_dssp CTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEE
T ss_pred cCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccE
Confidence 76432 1 11000000001122345789999995554445555799999999987654 22222 223456799
Q ss_pred EEccCCCEEEEEecC-CCeEEEEeCC--CCceEEEEeecccCCccceEEEEEcCCCCEEEEEc-cCCcEEEEE--cCCCC
Q 014125 272 QFSRDGNYLYTGGRK-DPYILCWDLR--KAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGG-QDGLVHIYD--LQTGK 345 (430)
Q Consensus 272 ~~~~~~~~l~~~~~~-d~~i~i~d~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd--~~~~~ 345 (430)
+|+|+|++|+++... ++.|.+|++. ++.... ...... ...+..++|+|+|++|++++ .++.|.+|+ ..+++
T Consensus 265 ~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~--~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~ 341 (361)
T 3scy_A 265 HLSPDGKYLYASNRLKADGVAIFKVDETNGTLTK--VGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGL 341 (361)
T ss_dssp EECTTSSEEEEEECSSSCEEEEEEECTTTCCEEE--EEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCC
T ss_pred EECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEE--eeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCc
Confidence 999999999888744 5899999996 232211 111122 45677899999999888887 578899965 45677
Q ss_pred eeccc-ccccCCeeEEEEc
Q 014125 346 WISGF-QAAADTVNGFSFH 363 (430)
Q Consensus 346 ~~~~~-~~~~~~v~~~~~~ 363 (430)
+.... ..+...+.++.|.
T Consensus 342 ~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 342 LTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp EEECSCCEECSSEEEEEEE
T ss_pred EeecceeeeCCCCeEEEEc
Confidence 65443 2345578888885
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.1e-22 Score=177.94 Aligned_cols=248 Identities=13% Similarity=0.105 Sum_probs=179.9
Q ss_pred CeeeeeeeccccCccCCCCceEEEEeC-------CCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE
Q 014125 120 ESVYDFCWFPHMSASDPTSCVFASTTR-------DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG 191 (430)
Q Consensus 120 ~~v~~~~~~~~~~~~~~~~~~l~~~~~-------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~ 191 (430)
..+..++| +|+++.+++++. ++.|.+||..+++....+.... .+..++|+|+++.++ ++
T Consensus 41 ~~~~~~~~-------s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~------~~~~~~~s~dg~~l~v~~ 107 (353)
T 3vgz_A 41 KGAYEMAY-------SQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDL------KPFGATINNTTQTLWFGN 107 (353)
T ss_dssp SSEEEEEE-------ETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESS------CCCSEEEETTTTEEEEEE
T ss_pred cCccceEE-------CCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCC------CcceEEECCCCCEEEEEe
Confidence 45677888 778888887774 5689999999998888776533 466899999999666 44
Q ss_pred -cCCeEEEEEcCCCCCcccccccccCC--CCCCCcceEEEEEcCCCCceEEEe-cCCCeEEEEEcCCceeeEEeeccccC
Q 014125 192 -YNKSVRVFDVHRPGRDFEKYSTLKGN--KEGQAGIMSAIAFSPTHTGMLAIG-SYSQTSAIYREDNMELLYVLHGQEGG 267 (430)
Q Consensus 192 -~d~~i~v~d~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~v~~~d~~~~~~~~~~~~~~~~ 267 (430)
.++.|.+||..+..... ........ .......+.+++|+|++..+++++ ..++.|.+||..+++....+..+...
T Consensus 108 ~~~~~v~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~ 186 (353)
T 3vgz_A 108 TVNSAVTAIDAKTGEVKG-RLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKM 186 (353)
T ss_dssp TTTTEEEEEETTTCCEEE-EEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTT
T ss_pred cCCCEEEEEeCCCCeeEE-EEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCc
Confidence 57999999997643211 11000000 001112378899999655444444 35889999999999988888756666
Q ss_pred eEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEcc-CCcEEEEEcCCCCe
Q 014125 268 VTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQ-DGLVHIYDLQTGKW 346 (430)
Q Consensus 268 i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~ 346 (430)
+.+++|+|+++++++++ .++.|.+||+.+............++...+..++|+|+|+++++++. ++.|.+||+.+++.
T Consensus 187 ~~~~~~s~dg~~l~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~ 265 (353)
T 3vgz_A 187 STGLALDSEGKRLYTTN-ADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNI 265 (353)
T ss_dssp CCCCEEETTTTEEEEEC-TTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCE
T ss_pred cceEEECCCCCEEEEEc-CCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Confidence 88999999999999998 89999999999875443222212234566888999999997776655 48999999999998
Q ss_pred ecccccccCCeeEEEEcCCCcEEEEee-CCceeeecCCC
Q 014125 347 ISGFQAAADTVNGFSFHPFLPMAASSS-GHRRFPVDDFE 384 (430)
Q Consensus 347 ~~~~~~~~~~v~~~~~~~~~~~l~s~~-~d~~~~vw~~~ 384 (430)
+..+.... ...++|+|+++.++.++ .++.+.+||..
T Consensus 266 ~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 302 (353)
T 3vgz_A 266 LAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAK 302 (353)
T ss_dssp EEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECC
Confidence 87776543 36799999999665555 56777777653
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.91 E-value=6.1e-22 Score=175.68 Aligned_cols=262 Identities=16% Similarity=0.198 Sum_probs=169.7
Q ss_pred cCCCceeEEEECcCCceEEEecC---CCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCcc
Q 014125 58 IPNNFLKGIKWSPDGSSFLTSSE---DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS 134 (430)
Q Consensus 58 ~h~~~v~~~~~sp~~~~l~s~~~---dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 134 (430)
.+...+..++|+|||+ |++++. ++.|++|++.++... .......+...+..++|
T Consensus 37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~---------------~~~~~~~~~~~p~~~a~------- 93 (347)
T 3hfq_A 37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAH---------------KLNTVVAPGTPPAYVAV------- 93 (347)
T ss_dssp EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEE---------------EEEEEEEESCCCSEEEE-------
T ss_pred eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEE---------------EeeeeecCCCCCEEEEE-------
Confidence 4456688899999999 555544 689999999654210 01111223456677777
Q ss_pred CCCCceEEEEe-CCCcEEEEeccC-Ccee--eeeeccccc----ccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCC
Q 014125 135 DPTSCVFASTT-RDHPIHLWDATT-GLLR--CTYRAYDAV----DEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPG 205 (430)
Q Consensus 135 ~~~~~~l~~~~-~dg~i~vwd~~~-~~~~--~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~ 205 (430)
+|++++|++++ .++.|.+|++.. +... ..+...... .....+.+++|+|++++++++ .++.|.+|++...+
T Consensus 94 spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g 173 (347)
T 3hfq_A 94 DEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAG 173 (347)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTS
T ss_pred CCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCC
Confidence 77899888887 678999999963 3322 222111100 011247789999999955555 57899999998422
Q ss_pred CcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCC--cee--eEEeeccc------cCeEEEEEcc
Q 014125 206 RDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN--MEL--LYVLHGQE------GGVTHVQFSR 275 (430)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~--~~~--~~~~~~~~------~~i~~~~~~~ 275 (430)
. ........ ......+..++|+|++..+++++..++.|.+|++.. ++. ...+.... ..+..++|+|
T Consensus 174 ~-~~~~~~~~---~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~sp 249 (347)
T 3hfq_A 174 Q-LSEQSVLT---MEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSH 249 (347)
T ss_dssp C-EEEEEEEE---CCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECT
T ss_pred c-EEEeeeEE---cCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECC
Confidence 2 11111111 112235678999996555666678899999999874 443 22332222 3488899999
Q ss_pred CCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccC-CcEEEE--EcCCCCee
Q 014125 276 DGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQD-GLVHIY--DLQTGKWI 347 (430)
Q Consensus 276 ~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~vw--d~~~~~~~ 347 (430)
+|++|++++..++.|.+|++...... ........+...+..++|+|+|++|++++.+ +.|.+| |..++++.
T Consensus 250 dG~~l~v~~~~~~~v~v~~~~~~g~~-~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 250 DGHFLYVSNRGYNTLAVFAVTADGHL-TLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp TSCEEEEEEETTTEEEEEEECGGGCE-EEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred CCCEEEEEeCCCCEEEEEEECCCCcE-EEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 99988766647899999999743211 1222223344567899999999988887764 889999 44566654
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.91 E-value=7.6e-22 Score=175.12 Aligned_cols=278 Identities=11% Similarity=-0.003 Sum_probs=175.7
Q ss_pred EEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceE-EE
Q 014125 65 GIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF-AS 143 (430)
Q Consensus 65 ~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l-~~ 143 (430)
.+++++++.++++++.++.|++||+.+++.... +.......+..++| +|+++.+ ++
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~----------------~~~~~~~~~~~~~~-------s~dg~~~~v~ 60 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKS----------------CVMPDKFGPGTAMM-------APDNRTAYVL 60 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEE----------------EECSSCCSSCEEEE-------CTTSSEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEE----------------EecCCCCCCceeEE-------CCCCCEEEEE
Confidence 457888999999999999999999987643211 11111113556777 7788765 45
Q ss_pred EeCCCcEEEEeccCCceeeeeeccccc-ccccceEEEEECCCCcEEEEE-c------------CCeEEEEEcCCCCCccc
Q 014125 144 TTRDHPIHLWDATTGLLRCTYRAYDAV-DEITAAFSVAFNPTGTKIFAG-Y------------NKSVRVFDVHRPGRDFE 209 (430)
Q Consensus 144 ~~~dg~i~vwd~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~-~------------d~~i~v~d~~~~~~~~~ 209 (430)
+..++.|.+||+.+++....+...... .....+..++|+|++++++++ . ++.|.+||+.+... ..
T Consensus 61 ~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~ 139 (349)
T 1jmx_B 61 NNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE-AK 139 (349)
T ss_dssp ETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG-BC
T ss_pred eCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccc-cc
Confidence 567899999999999887766543210 001246789999999998855 3 48999999975211 11
Q ss_pred ccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeecccc-----------------------
Q 014125 210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEG----------------------- 266 (430)
Q Consensus 210 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~----------------------- 266 (430)
.... ..+...+.+++|+|++. +++ ++ +.|.+||..+++....+..+..
T Consensus 140 ~~~~-----~~~~~~~~~~~~s~dg~-l~~-~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (349)
T 1jmx_B 140 PVRT-----FPMPRQVYLMRAADDGS-LYV-AG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEF 210 (349)
T ss_dssp CSEE-----EECCSSCCCEEECTTSC-EEE-ES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEE
T ss_pred eeee-----ccCCCcccceeECCCCc-EEE-cc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeE
Confidence 0011 11223578899999554 444 43 4499999999887776653320
Q ss_pred -CeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcC-CCCEEEEEccCCcEEEEEcCCC
Q 014125 267 -GVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEP-SGRHLGTGGQDGLVHIYDLQTG 344 (430)
Q Consensus 267 -~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~ 344 (430)
....+++++++............+..+|..++....... ......+..++|+| +|++++++ ++.|++||+.++
T Consensus 211 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~ 285 (349)
T 1jmx_B 211 SMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEF---ADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQR 285 (349)
T ss_dssp EEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEE---EECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTT
T ss_pred EeeeeeeecCCCcCCccccccceeEEEEeccCCcEEeccc---ccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccC
Confidence 234566666543211111001112224544443222111 22455678899999 99999888 889999999999
Q ss_pred CeecccccccCCeeEEEEcCCCcEEEEeeCCceeeec
Q 014125 345 KWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVD 381 (430)
Q Consensus 345 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw 381 (430)
+.+..+.. ...+.+++|+|++++|++++.++.+.+|
T Consensus 286 ~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~v~v~ 321 (349)
T 1jmx_B 286 KLIKAANL-DHTYYCVAFDKKGDKLYLGGTFNDLAVF 321 (349)
T ss_dssp EEEEEEEC-SSCCCEEEECSSSSCEEEESBSSEEEEE
T ss_pred eEEEEEcC-CCCccceEECCCCCEEEEecCCCeEEEE
Confidence 88777763 3457899999999988887644333333
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.2e-21 Score=176.29 Aligned_cols=319 Identities=12% Similarity=0.076 Sum_probs=193.7
Q ss_pred CCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCc
Q 014125 60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC 139 (430)
Q Consensus 60 ~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (430)
...++.+++++++.+|++++.|+ ++||+.............. .............+...|.+++| +|+++
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~l~~-------spdg~ 105 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDP--NKIVDKVQGLLVPMKFPIHHLAL-------SCDNL 105 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCT--TCEEECCCCEEECCSSCEEEEEE-------CTTSC
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCc--ccccccCccccccCCCcccEEEE-------cCCCC
Confidence 44689999999999999999987 8998764221100000000 00001111223455678999999 77899
Q ss_pred eEE----EEeCCCcEEEEeccCC--------ceeeeeecccccccccceEEEEECCC-CcEEE-EEcCCeEEEEEcCCCC
Q 014125 140 VFA----STTRDHPIHLWDATTG--------LLRCTYRAYDAVDEITAAFSVAFNPT-GTKIF-AGYNKSVRVFDVHRPG 205 (430)
Q Consensus 140 ~l~----~~~~dg~i~vwd~~~~--------~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~-~~~d~~i~v~d~~~~~ 205 (430)
+|+ +++.|+.|++||+.++ +.+..+... ..|...|.+++|+|+ +.+|+ ++.|++|++||++...
T Consensus 106 ~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~--~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~ 183 (434)
T 2oit_A 106 TLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLL--KDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETV 183 (434)
T ss_dssp EEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECC--CSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSE
T ss_pred EEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeecc--CCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCc
Confidence 999 7889999999998765 222222221 123448999999998 67777 5699999999998741
Q ss_pred CcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeecc-------ccCeEEEEEccCCC
Q 014125 206 RDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ-------EGGVTHVQFSRDGN 278 (430)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~-------~~~i~~~~~~~~~~ 278 (430)
. .....+|...+.+++|+| ++.+|++|+.||+|++||.+ ++....+..| ...|.+++|++++.
T Consensus 184 ~--------~~~~~~~~~~v~~v~wsp-dg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~ 253 (434)
T 2oit_A 184 K--------VCATLPSTVAVTSVCWSP-KGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYV 253 (434)
T ss_dssp E--------EEEEECGGGCEEEEEECT-TSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTE
T ss_pred c--------eeeccCCCCceeEEEEcC-CCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCce
Confidence 1 111235677899999999 57799999999999999998 5544444433 23799999999988
Q ss_pred EEEEEecCCC------eEEEEeCCCCc----eEEEEeecc----cCCccceEEEEEcCCCCEEEEEcc-CCcEEEEEcCC
Q 014125 279 YLYTGGRKDP------YILCWDLRKAV----QVVYKLYRS----SEHTNQRILFDIEPSGRHLGTGGQ-DGLVHIYDLQT 343 (430)
Q Consensus 279 ~l~~~~~~d~------~i~i~d~~~~~----~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~ 343 (430)
++++.+..+| .+++|+++... ......... .....+-..+.+-++.+++++++. .+.|.|.....
T Consensus 254 ~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~ 333 (434)
T 2oit_A 254 FAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQS 333 (434)
T ss_dssp EEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECT
T ss_pred EEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEecC
Confidence 8776553554 38999998652 111121111 122223333444466666555543 44466665432
Q ss_pred CC--e---------ecccc----cccCCeeEEEEcCCCcEEEEeeCCceeeecCCCccccccCCCcEEEEeecc
Q 014125 344 GK--W---------ISGFQ----AAADTVNGFSFHPFLPMAASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLY 402 (430)
Q Consensus 344 ~~--~---------~~~~~----~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~ 402 (430)
.. . ...+. .......++++.-....-+....+. .+--...|....+||.+..|.+-.
T Consensus 334 ~~~~~~~~~~~d~~ra~lP~~~~~~dt~piG~~~d~~~~~~v~~~~~~--~~~p~P~l~~l~~~G~L~~~~~~~ 405 (434)
T 2oit_A 334 DQINWESWLLEDSSRAELPVTDKSDDSLPMGVVVDYTNQVEITISDEK--TLPPAPVLMLLSTDGVLCPFYMIN 405 (434)
T ss_dssp TSSCEEEEEECGGGCCBCCBCTTSCBCCEEEEEEECCCCCCEEEETTE--EECCCCEEEEEETTSEEEEEEEEE
T ss_pred CCCccEEEeccccccccccCCCCCCCceeeEEEEEccCCceeecCccc--cCCCCCEEEEECCCCEEEEEEEEe
Confidence 11 0 00111 1222345555543222111222221 111334566778899999998875
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.1e-22 Score=179.62 Aligned_cols=278 Identities=13% Similarity=0.067 Sum_probs=180.2
Q ss_pred ecccCCCceeE-----EEECcCCceEEEecC-CCe--EEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeee
Q 014125 55 TSSIPNNFLKG-----IKWSPDGSSFLTSSE-DKT--LRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFC 126 (430)
Q Consensus 55 ~~~~h~~~v~~-----~~~sp~~~~l~s~~~-dg~--v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 126 (430)
.+..|...... .+|||||++|+.++. +|. |.+||+.+++.. .+...+...+..++
T Consensus 25 ~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~-----------------~lt~~~~~~~~~~~ 87 (388)
T 3pe7_A 25 RLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVAT-----------------QLTEGRGDNTFGGF 87 (388)
T ss_dssp ECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEE-----------------ECCCSSCBCSSSCE
T ss_pred EecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceE-----------------EeeeCCCCCccceE
Confidence 45555554544 889999999998887 664 888888765321 11112223344566
Q ss_pred eccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceE--EEEECCCCcEEEEE-------------
Q 014125 127 WFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAF--SVAFNPTGTKIFAG------------- 191 (430)
Q Consensus 127 ~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~l~~~------------- 191 (430)
| +|+++.|+.++.++.|++||+.+++.......+.. .+. ...++|+++++++.
T Consensus 88 ~-------spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~-----~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~ 155 (388)
T 3pe7_A 88 L-------SPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAE-----WVGYGTWVANSDCTKLVGIEIRREDWVPLTDW 155 (388)
T ss_dssp E-------CTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTT-----EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSH
T ss_pred E-------cCCCCEEEEEeCCCeEEEEECCCCcceeeeechhh-----cccccceeECCCCCeeccccccCccccccccc
Confidence 7 88999999999999999999999987766654432 222 23458999988732
Q ss_pred ----------cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcC-CCCceEEEecC-----CCeEEEEEcCCc
Q 014125 192 ----------YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSP-THTGMLAIGSY-----SQTSAIYREDNM 255 (430)
Q Consensus 192 ----------~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~-----dg~v~~~d~~~~ 255 (430)
.+..|.+||+.++.. . .+ ..+...+..+.|+| ++..++++... ...|.++|...+
T Consensus 156 ~~~~~~~~~~~~~~l~~~d~~~g~~--~---~l----~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~ 226 (388)
T 3pe7_A 156 KKFHEFYFTKPCCRLMRVDLKTGES--T---VI----LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGT 226 (388)
T ss_dssp HHHHHHGGGCCCEEEEEEETTTCCE--E---EE----EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSC
T ss_pred chhhhhhccCCcceEEEEECCCCce--E---Ee----ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCC
Confidence 236789999876421 1 11 12334588999999 66544444332 337888888765
Q ss_pred eeeEEeeccc--cCeEEEEEccCCCEEEEEecCCC----eEEEEeCCCCceEEEEeecccCCccc---eEEEEEcCCCCE
Q 014125 256 ELLYVLHGQE--GGVTHVQFSRDGNYLYTGGRKDP----YILCWDLRKAVQVVYKLYRSSEHTNQ---RILFDIEPSGRH 326 (430)
Q Consensus 256 ~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~~d~----~i~i~d~~~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~ 326 (430)
+.. .+..+. ..+..++|+|+|+.|+..+..++ .|++||+.++........ ..+... .....|+|+|+.
T Consensus 227 ~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~--~~~~~~~~~~~~~~~spdg~~ 303 (388)
T 3pe7_A 227 NMR-KVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSM--PACSHLMSNYDGSLMVGDGSD 303 (388)
T ss_dssp CCE-ESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEE--CCEEEEEECTTSSEEEEEECC
T ss_pred ceE-EeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcC--CCceeeeecCCCCeEccCCCc
Confidence 543 333333 35788999999998766542322 399999998754322111 111000 111368999988
Q ss_pred EEEE---------ccCCcEEEEEcCCCCeecccccccC-----------CeeEEEEcCCCcEEEEeeC
Q 014125 327 LGTG---------GQDGLVHIYDLQTGKWISGFQAAAD-----------TVNGFSFHPFLPMAASSSG 374 (430)
Q Consensus 327 l~~~---------~~dg~i~vwd~~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~l~s~~~ 374 (430)
|+.. ..+..|++||+.+++. ..+..+.. .+..++|+|+|+.|+.++.
T Consensus 304 l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~ 370 (388)
T 3pe7_A 304 APVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSD 370 (388)
T ss_dssp C------------CCCCEEEEEETTTTEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEEC
T ss_pred ceeEeeeccccccCCCCEEEEEeccCCce-EEeccccCcccccccccccCCCCccCCCCCCEEEEEec
Confidence 7754 4466899999998765 44544554 5788999999998887763
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.8e-21 Score=170.57 Aligned_cols=250 Identities=13% Similarity=0.076 Sum_probs=175.1
Q ss_pred ceeEEEECcCCceE-EEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCce
Q 014125 62 FLKGIKWSPDGSSF-LTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV 140 (430)
Q Consensus 62 ~v~~~~~sp~~~~l-~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (430)
.+.+++|+|+|+++ ++++.++.|.+||+.+++....+.... ...++..+..++| +|+++.
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~------------~~~~~~~~~~~~~-------s~dg~~ 95 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLST------------PEERVKSLFGAAL-------SPDGKT 95 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCB------------TTEEEECTTCEEE-------CTTSSE
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCC------------cccccccccceEE-------CCCCCE
Confidence 47889999999765 566678999999998764322111100 0001124556667 789988
Q ss_pred EEEEe------------CCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcc
Q 014125 141 FASTT------------RDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDF 208 (430)
Q Consensus 141 l~~~~------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~ 208 (430)
|++++ .++.|.+||+.+++....+.... .+.+++|+|++++++++ ++.|.+||+......
T Consensus 96 l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~------~~~~~~~s~dg~~l~~~-~~~i~~~d~~~~~~~- 167 (337)
T 1pby_B 96 LAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPR------QITMLAWARDGSKLYGL-GRDLHVMDPEAGTLV- 167 (337)
T ss_dssp EEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCS------SCCCEEECTTSSCEEEE-SSSEEEEETTTTEEE-
T ss_pred EEEEecccccccccccccCceEEEEECCCCcEEEEEeCCC------CcceeEECCCCCEEEEe-CCeEEEEECCCCcEe-
Confidence 88886 57999999999988777665432 56789999999988866 789999999764211
Q ss_pred cccccccCCCCCCCcceEEEEEcCCCCceEEEecCCC-----------------------eEEEEEcCCceee-EEeecc
Q 014125 209 EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ-----------------------TSAIYREDNMELL-YVLHGQ 264 (430)
Q Consensus 209 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----------------------~v~~~d~~~~~~~-~~~~~~ 264 (430)
..+.. .....+ +.|+|++..+++++..++ .|.+||+.+++.. ..+..+
T Consensus 168 ---~~~~~--~~~~~~---~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~ 239 (337)
T 1pby_B 168 ---EDKPI--QSWEAE---TYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIM 239 (337)
T ss_dssp ---EEECS--TTTTTT---TBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEEC
T ss_pred ---eeeec--cccCCC---ceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCC
Confidence 11110 010112 267886554544444444 4689999988764 223345
Q ss_pred ccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCC
Q 014125 265 EGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTG 344 (430)
Q Consensus 265 ~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 344 (430)
...+.+++|+|++++++++ ++.|.+||+.+.+... .+. ....+.+++|+|+|++|++++.++.|++||+.++
T Consensus 240 ~~~~~~~~~s~dg~~l~~~---~~~v~~~d~~~~~~~~-~~~----~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~ 311 (337)
T 1pby_B 240 DVFYFSTAVNPAKTRAFGA---YNVLESFDLEKNASIK-RVP----LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETL 311 (337)
T ss_dssp SSCEEEEEECTTSSEEEEE---ESEEEEEETTTTEEEE-EEE----CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTC
T ss_pred CCceeeEEECCCCCEEEEe---CCeEEEEECCCCcCcc-eec----CCCceeeEEECCCCCEEEEEcCCCcEEEEECcCC
Confidence 5678899999999998877 5899999998874332 221 2245678999999999999999999999999999
Q ss_pred Ceeccccccc
Q 014125 345 KWISGFQAAA 354 (430)
Q Consensus 345 ~~~~~~~~~~ 354 (430)
+.+..+..+.
T Consensus 312 ~~~~~~~~~~ 321 (337)
T 1pby_B 312 EKKGQVDLPG 321 (337)
T ss_dssp CEEEEEECGG
T ss_pred cEEEEEEcCC
Confidence 9888776553
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1e-22 Score=198.51 Aligned_cols=281 Identities=10% Similarity=0.031 Sum_probs=182.0
Q ss_pred EEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCC---CeeeeeeeccccCccCCCCceE
Q 014125 65 GIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEG---ESVYDFCWFPHMSASDPTSCVF 141 (430)
Q Consensus 65 ~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~l 141 (430)
+++|+|||++++++ .|+.|++||+.+++..... ..+. ..+.+++| ||||++|
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~-----------------~~~~~~~~~~~~~~~-------SpDg~~l 74 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYTIL-----------------SNRTMKSVNASNYGL-------SPDRQFV 74 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEE-----------------CHHHHHTTTCSEEEE-------CTTSSEE
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEE-----------------ccccccccceeeEEE-------CCCCCeE
Confidence 68999999766654 6999999999876432111 1111 13778888 8899999
Q ss_pred EEEeC---------CCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccc
Q 014125 142 ASTTR---------DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYS 212 (430)
Q Consensus 142 ~~~~~---------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~ 212 (430)
++++. ++.|++||+.+++.+...... ..+..++|+|||+.|+.+.++.|++|++..+........
T Consensus 75 a~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~------~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~ 148 (719)
T 1z68_A 75 YLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELP------RPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFN 148 (719)
T ss_dssp EEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCC------SSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEECCCC
T ss_pred EEEecCceeEEeecceEEEEEECCCCccccceecC------cccccceECCCCCEEEEEECCeEEEEeCCCCCcEEEecC
Confidence 98876 789999999998763111111 157789999999999987899999999976432110000
Q ss_pred cc-cCCCCCCCc---------ceEEEEEcCCCCceEEEecCCC----------------------------------eEE
Q 014125 213 TL-KGNKEGQAG---------IMSAIAFSPTHTGMLAIGSYSQ----------------------------------TSA 248 (430)
Q Consensus 213 ~~-~~~~~~~~~---------~v~~~~~~~~~~~~l~~~~~dg----------------------------------~v~ 248 (430)
.. .....++.. ...+++|+| +++.|++++.|. .|+
T Consensus 149 ~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP-DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~ 227 (719)
T 1z68_A 149 GRENKIFNGIPDWVYEEEMLATKYALWWSP-NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIF 227 (719)
T ss_dssp CBTTTEEESSCCHHHHHHTTCSSCCEEECT-TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEE
T ss_pred CCcCCeEcccccceeeeecccCcccEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEE
Confidence 00 000011111 125899999 555777766442 788
Q ss_pred EEEcCCceee---E-----EeeccccCeEEEEEccCCCEEEEEecC-C--CeEEEEe----CCCCceEEEEeec--ccCC
Q 014125 249 IYREDNMELL---Y-----VLHGQEGGVTHVQFSRDGNYLYTGGRK-D--PYILCWD----LRKAVQVVYKLYR--SSEH 311 (430)
Q Consensus 249 ~~d~~~~~~~---~-----~~~~~~~~i~~~~~~~~~~~l~~~~~~-d--~~i~i~d----~~~~~~~~~~~~~--~~~~ 311 (430)
+||+.+++.. . .+..|...+..++|+||++.+++.... + ..|.+|| +.++... .+.. ...+
T Consensus 228 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~--~~~~~~~~~~ 305 (719)
T 1z68_A 228 IIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCP--KTQEHIEESR 305 (719)
T ss_dssp EEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECC--GGGEEEEECS
T ss_pred EEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceE--EEEecccccC
Confidence 9999887642 1 123577789999999998766664311 2 2488899 6654221 1110 0234
Q ss_pred ccceE-----EEEEcCCCCEEEE--EccCC--cEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCC-----ce
Q 014125 312 TNQRI-----LFDIEPSGRHLGT--GGQDG--LVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGH-----RR 377 (430)
Q Consensus 312 ~~~v~-----~~~~~~~~~~l~~--~~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-----~~ 377 (430)
...+. .+.|+|+|+.|+. +..+| .|++||+.+++ ...+..+...+..+.+. +++.|+..+.+ +.
T Consensus 306 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~ 383 (719)
T 1z68_A 306 TGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGR 383 (719)
T ss_dssp SSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTC
T ss_pred CceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCce
Confidence 44454 7899999986554 44555 57778887766 44555555667887777 77777666654 66
Q ss_pred eeec
Q 014125 378 FPVD 381 (430)
Q Consensus 378 ~~vw 381 (430)
.++|
T Consensus 384 ~~l~ 387 (719)
T 1z68_A 384 RNIY 387 (719)
T ss_dssp BEEE
T ss_pred EEEE
Confidence 7777
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.89 E-value=6.5e-22 Score=187.96 Aligned_cols=233 Identities=12% Similarity=0.040 Sum_probs=172.7
Q ss_pred CCeeeeeeeccccCccCCCCceEEEEeC-CCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-c---C
Q 014125 119 GESVYDFCWFPHMSASDPTSCVFASTTR-DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-Y---N 193 (430)
Q Consensus 119 ~~~v~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~---d 193 (430)
..+|++++| +|||+.||+++. ||+++||++.+++.......+.. .+..++|+|+ ++++++ . +
T Consensus 21 ~~~~~~~~~-------~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~-----~~~~~~~spd-~~l~~~~~~~g~ 87 (582)
T 3o4h_A 21 AVEKYSLQG-------VVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPIN-----SVLDPHYGVG-RVILVRDVSKGA 87 (582)
T ss_dssp HSCEEEEEE-------EETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCS-----EECEECTTCS-EEEEEEECSTTS
T ss_pred ccchheeec-------CCCCCeEEEEEccCCceeEEEEcCCCcEeeeccccc-----ccccccCCCC-eEEEEeccCCCC
Confidence 357999999 779999999887 99999999976665443322212 6789999999 666644 3 3
Q ss_pred CeEEEEEcCC--CCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEE
Q 014125 194 KSVRVFDVHR--PGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHV 271 (430)
Q Consensus 194 ~~i~v~d~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~ 271 (430)
....+|.++. .+... .+. .. ......+|+|++..++++...++.+.+||+.+++...... +.. .++
T Consensus 88 ~~~~l~~~~~~~~g~~~----~l~---~~--~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~-~~~--~~~ 155 (582)
T 3o4h_A 88 EQHALFKVNTSRPGEEQ----RLE---AV--KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELAR-LPG--FGF 155 (582)
T ss_dssp CCEEEEEEETTSTTCCE----ECT---TS--CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEE-ESS--CEE
T ss_pred cceEEEEEeccCCCccc----ccc---CC--CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeec-CCC--ceE
Confidence 5566766654 32211 110 11 1234568888666666555555666699999887665554 323 889
Q ss_pred EEccCCCEEEEEecCC----CeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCC--cEEEEEcCCCC
Q 014125 272 QFSRDGNYLYTGGRKD----PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDG--LVHIYDLQTGK 345 (430)
Q Consensus 272 ~~~~~~~~l~~~~~~d----~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~vwd~~~~~ 345 (430)
+|+|||++|++++ .+ +.|++||+.++... .+ ..+...+..++|+|||++|+++..++ .|++||+.+++
T Consensus 156 ~~spDG~~la~~~-~~~~~~~~i~~~d~~~g~~~--~l---~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~ 229 (582)
T 3o4h_A 156 VSDIRGDLIAGLG-FFGGGRVSLFTSNLSSGGLR--VF---DSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGS 229 (582)
T ss_dssp EEEEETTEEEEEE-EEETTEEEEEEEETTTCCCE--EE---CCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCC
T ss_pred EECCCCCEEEEEE-EcCCCCeEEEEEcCCCCCce--Ee---ecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCc
Confidence 9999999999877 56 78999999877533 22 35667789999999999999888888 89999999998
Q ss_pred eecccccccCCeeEEE--------EcCCCcEEEEeeCCceeeecCC
Q 014125 346 WISGFQAAADTVNGFS--------FHPFLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 346 ~~~~~~~~~~~v~~~~--------~~~~~~~l~s~~~d~~~~vw~~ 383 (430)
.. .+..|...+..++ |+|+|.++++++.++.+++|+.
T Consensus 230 ~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 230 VE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp EE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred EE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 87 7777777777777 9999999999999999999865
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-21 Score=178.22 Aligned_cols=192 Identities=15% Similarity=0.095 Sum_probs=141.4
Q ss_pred ceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCc-------ccccccccCCCCCCCcceEEEEEcCCCCceEE----EecC
Q 014125 175 AAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRD-------FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLA----IGSY 243 (430)
Q Consensus 175 ~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~-------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~----~~~~ 243 (430)
.+..+++++++.+++++....+++|+....... .............+...|.+++|+|+ +++|+ +|+.
T Consensus 38 ~~n~lavs~~~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spd-g~~lav~~~sgs~ 116 (434)
T 2oit_A 38 RSSLLAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCD-NLTLSACMMSSEY 116 (434)
T ss_dssp CCBCEEEETTTTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTT-SCEEEEEEEETTT
T ss_pred CccEEEEecCCCEEEEECCCEEEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCC-CCEEEEEEeccCC
Confidence 567899999999998664334999876421000 00000000011234567999999994 56777 7889
Q ss_pred CCeEEEEEcCCc--------ee---eEEeeccccCeEEEEEccC-CCEEEEEecCCCeEEEEeCCCCceEEEEeecccCC
Q 014125 244 SQTSAIYREDNM--------EL---LYVLHGQEGGVTHVQFSRD-GNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEH 311 (430)
Q Consensus 244 dg~v~~~d~~~~--------~~---~~~~~~~~~~i~~~~~~~~-~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 311 (430)
|+.|++||+++. +. ...+.+|...|.+++|+|+ +.+|++++ .||.|++||+++..... . ...|
T Consensus 117 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s-~Dg~v~iwD~~~~~~~~-~---~~~~ 191 (434)
T 2oit_A 117 GSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL-ADGSIAVLQVTETVKVC-A---TLPS 191 (434)
T ss_dssp EEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE-TTSCEEEEEESSSEEEE-E---EECG
T ss_pred CceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE-CCCeEEEEEcCCCccee-e---ccCC
Confidence 999999998765 22 4456679999999999998 78899898 99999999999874332 2 1357
Q ss_pred ccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccc-------cCCeeEEEEcCCCcEEEEee
Q 014125 312 TNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAA-------ADTVNGFSFHPFLPMAASSS 373 (430)
Q Consensus 312 ~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~s~~ 373 (430)
...+.+++|+|+|++|++|+.||.|++||++ ++....+..| ...|.+++|++++.++++.+
T Consensus 192 ~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~ 259 (434)
T 2oit_A 192 TVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYA 259 (434)
T ss_dssp GGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEE
T ss_pred CCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEc
Confidence 8899999999999999999999999999998 5555544433 23799999999988876543
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=3.5e-20 Score=165.31 Aligned_cols=251 Identities=12% Similarity=0.070 Sum_probs=166.1
Q ss_pred eeeeeeeccccCccCCCCceEEEEeCCCcEEEEecc-CCceeeeeecccccccccceEEEEECCCCcE--EEEE------
Q 014125 121 SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDAT-TGLLRCTYRAYDAVDEITAAFSVAFNPTGTK--IFAG------ 191 (430)
Q Consensus 121 ~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~------ 191 (430)
.+..++| +|++++|++++.+ .|.+|++. +++.......... . .+.+++|+|+|++ ++++
T Consensus 41 ~~~~~a~-------spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~-g---~~~~~~~spdg~~l~~~~~~~~~~~ 108 (365)
T 1jof_A 41 PISWMTF-------DHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG-G---HPRANDADTNTRAIFLLAAKQPPYA 108 (365)
T ss_dssp CCSEEEE-------CTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC-S---SGGGGCTTSCCEEEEEEECSSTTCC
T ss_pred CCcEEEE-------CCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC-C---CCccEEECCCCCEEEEEEecCCcce
Confidence 5666777 8899999999888 89999997 7765443322110 1 2446889999995 3332
Q ss_pred --------cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEe-cCCCeEEEEEcC-Cceee--E
Q 014125 192 --------YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIG-SYSQTSAIYRED-NMELL--Y 259 (430)
Q Consensus 192 --------~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~v~~~d~~-~~~~~--~ 259 (430)
.++.+.+|++...+.......... ..+...+.+++|+|++. +++++ ..++.|++|++. +++.. .
T Consensus 109 ~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~spdG~-~l~~~~~~~~~v~~~~~~~~g~~~~~~ 184 (365)
T 1jof_A 109 VYANPFYKFAGYGNVFSVSETGKLEKNVQNYE---YQENTGIHGMVFDPTET-YLYSADLTANKLWTHRKLASGEVELVG 184 (365)
T ss_dssp EEEEEESSSCCEEEEEEECTTCCEEEEEEEEE---CCTTCCEEEEEECTTSS-EEEEEETTTTEEEEEEECTTSCEEEEE
T ss_pred eccceeecCCceEEEEccCCCCcCcceEeeEE---eCCCCcceEEEECCCCC-EEEEEcCCCCEEEEEEECCCCCEEEee
Confidence 588999999975333211111110 12345689999999554 55554 457899999998 66543 2
Q ss_pred Eee--ccccCeEEEEEccCCCEEEEEecCCCeEEEEeCC--CCceEE--EEeeccc----CCcc------ceEEEE-EcC
Q 014125 260 VLH--GQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR--KAVQVV--YKLYRSS----EHTN------QRILFD-IEP 322 (430)
Q Consensus 260 ~~~--~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~--~~~~~~--~~~~~~~----~~~~------~v~~~~-~~~ 322 (430)
.+. .|...+..++|+|+|++|++++..++.|.+|++. ++.... ..+.... ++.. .+..++ |+|
T Consensus 185 ~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~sp 264 (365)
T 1jof_A 185 SVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTF 264 (365)
T ss_dssp EEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECT
T ss_pred eEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECC
Confidence 333 2356789999999999999887457899999875 332211 1111111 1122 578899 999
Q ss_pred CCCEEEEEccCC------cEEEEEcC-CCCeecc---cccccCCeeEEEEcC---CCcEEEEeeCCceeeecCCCccccc
Q 014125 323 SGRHLGTGGQDG------LVHIYDLQ-TGKWISG---FQAAADTVNGFSFHP---FLPMAASSSGHRRFPVDDFEDLHLS 389 (430)
Q Consensus 323 ~~~~l~~~~~dg------~i~vwd~~-~~~~~~~---~~~~~~~v~~~~~~~---~~~~l~s~~~d~~~~vw~~~~l~~~ 389 (430)
+|++|++++.+. .|.+|++. +++.... ...+...+..++|+| +|++|++++.+
T Consensus 265 dG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~-------------- 330 (365)
T 1jof_A 265 SGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQ-------------- 330 (365)
T ss_dssp TSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSS--------------
T ss_pred CCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcC--------------
Confidence 999988776432 89999996 5665431 333445678899999 89999888642
Q ss_pred cCCCcEEEEeeccc
Q 014125 390 GDENCVSVWSFLYA 403 (430)
Q Consensus 390 ~~d~~i~~w~~~~~ 403 (430)
++.|++|++...
T Consensus 331 --~~~v~v~~~~~~ 342 (365)
T 1jof_A 331 --EGWLEIYRWKDE 342 (365)
T ss_dssp --SCEEEEEEEETT
T ss_pred --CCeEEEEEEchh
Confidence 466777766554
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-19 Score=161.58 Aligned_cols=257 Identities=14% Similarity=0.188 Sum_probs=161.9
Q ss_pred CCCceeEEEECcCCceEEEecCCCeEEEEeCC-CCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCC
Q 014125 59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLP-ENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT 137 (430)
Q Consensus 59 h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 137 (430)
+...+..++|+|||++|++++.+ .|.+|++. +++... .......+....++| +|+
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~----------------~~~~~~~g~~~~~~~-------spd 93 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVH----------------EASHPIGGHPRANDA-------DTN 93 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEE----------------EEEEECCSSGGGGCT-------TSC
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEE----------------eeEeecCCCCccEEE-------CCC
Confidence 34468899999999999999888 99999986 442210 000000112333455 889
Q ss_pred Cce--EEEEe-------------CCCcEEEEecc-CCceeeeeecccccccccceEEEEECCCCcEEEEE--cCCeEEEE
Q 014125 138 SCV--FASTT-------------RDHPIHLWDAT-TGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG--YNKSVRVF 199 (430)
Q Consensus 138 ~~~--l~~~~-------------~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~d~~i~v~ 199 (430)
|+. ++++. .+|.+.+|++. +++....+..... .+...+.+++|+|+|++++++ .++.|++|
T Consensus 94 g~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~ 172 (365)
T 1jof_A 94 TRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEY-QENTGIHGMVFDPTETYLYSADLTANKLWTH 172 (365)
T ss_dssp CEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEEC-CTTCCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred CCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEe-CCCCcceEEEECCCCCEEEEEcCCCCEEEEE
Confidence 984 45553 68999999997 4655443332100 112267899999999988854 46899999
Q ss_pred EcC-CCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcC--Cceee---EEee-------cccc
Q 014125 200 DVH-RPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED--NMELL---YVLH-------GQEG 266 (430)
Q Consensus 200 d~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~--~~~~~---~~~~-------~~~~ 266 (430)
++. .+. ........ ...+...+..++|+|++..++++...++.|.+|++. +++.. ..+. +|..
T Consensus 173 ~~~~~g~--~~~~~~~~--~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~ 248 (365)
T 1jof_A 173 RKLASGE--VELVGSVD--APDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDP 248 (365)
T ss_dssp EECTTSC--EEEEEEEE--CSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCT
T ss_pred EECCCCC--EEEeeeEe--cCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCccc
Confidence 997 321 11111111 011245589999999554444444457899999865 45432 1221 1121
Q ss_pred ------CeEEEE-EccCCCEEEEEecCCC-----eEEEEeCCCCceEEEEeecccCCccceEEEEEcC---CCCEEEEEc
Q 014125 267 ------GVTHVQ-FSRDGNYLYTGGRKDP-----YILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEP---SGRHLGTGG 331 (430)
Q Consensus 267 ------~i~~~~-~~~~~~~l~~~~~~d~-----~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~ 331 (430)
.+..++ |+|+|++|+++...++ .|.+|++...............+...+..++|+| +|++|++++
T Consensus 249 ~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~ 328 (365)
T 1jof_A 249 ETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITD 328 (365)
T ss_dssp TTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEEC
T ss_pred ccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEE
Confidence 478999 9999999988763333 8999999632222211100112333455688999 899999988
Q ss_pred cC-CcEEEEEcCCC
Q 014125 332 QD-GLVHIYDLQTG 344 (430)
Q Consensus 332 ~d-g~i~vwd~~~~ 344 (430)
.+ +.|.+|+++..
T Consensus 329 ~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 329 DQEGWLEIYRWKDE 342 (365)
T ss_dssp SSSCEEEEEEEETT
T ss_pred cCCCeEEEEEEchh
Confidence 75 89999998765
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.8e-20 Score=182.62 Aligned_cols=287 Identities=13% Similarity=0.060 Sum_probs=184.7
Q ss_pred ceeEEEECcCCceEEEecC---------CCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccC
Q 014125 62 FLKGIKWSPDGSSFLTSSE---------DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS 132 (430)
Q Consensus 62 ~v~~~~~sp~~~~l~s~~~---------dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 132 (430)
.|.+++|||||++||+++. ++.|++||+.+++..... .+ ...+..++|
T Consensus 61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~----------------~l--~~~~~~~~~----- 117 (719)
T 1z68_A 61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGN----------------EL--PRPIQYLCW----- 117 (719)
T ss_dssp TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSS----------------CC--CSSBCCEEE-----
T ss_pred ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccce----------------ec--CcccccceE-----
Confidence 3899999999999999876 789999999876431000 00 135777888
Q ss_pred ccCCCCceEEEEeCCCcEEEEeccCCceeeeeeccccc----ccc---------cceEEEEECCCCcEEEE-EcC-C---
Q 014125 133 ASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAV----DEI---------TAAFSVAFNPTGTKIFA-GYN-K--- 194 (430)
Q Consensus 133 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~----~~~---------~~v~~~~~~~~~~~l~~-~~d-~--- 194 (430)
||||+.|+.+. ++.|++|++.+++........... ++. ....+++|+|||+.|+. +.| +
T Consensus 118 --SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~ 194 (719)
T 1z68_A 118 --SPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIP 194 (719)
T ss_dssp --CSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSC
T ss_pred --CCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCc
Confidence 88999999886 789999999888765432211100 000 11248999999999984 433 1
Q ss_pred ------------------------------eEEEEEcCCCCCccccccccc--CCCCCCCcceEEEEEcCCCCceEEEec
Q 014125 195 ------------------------------SVRVFDVHRPGRDFEKYSTLK--GNKEGQAGIMSAIAFSPTHTGMLAIGS 242 (430)
Q Consensus 195 ------------------------------~i~v~d~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~ 242 (430)
.|++||+..+.... . ..+. ..+.++...+..++|+|+ +.++++..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~SpD-~~~~~~~~ 271 (719)
T 1z68_A 195 VIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVG-P-QEVPVPAMIASSDYYFSWLTWVTD-ERVCLQWL 271 (719)
T ss_dssp EEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHC-C-EECCCCHHHHTSCEEEEEEEESSS-SEEEEEEE
T ss_pred eEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccc-e-eEccCCccCCCCcceEEEeEEeCC-CeEEEEEe
Confidence 78899987632100 0 0010 112356778999999996 66666643
Q ss_pred CC----CeEEEEE----cCCceeeEEe----eccccCeE-----EEEEccCCCEEEE-EecCCC--eEEEEeCCCCceEE
Q 014125 243 YS----QTSAIYR----EDNMELLYVL----HGQEGGVT-----HVQFSRDGNYLYT-GGRKDP--YILCWDLRKAVQVV 302 (430)
Q Consensus 243 ~d----g~v~~~d----~~~~~~~~~~----~~~~~~i~-----~~~~~~~~~~l~~-~~~~d~--~i~i~d~~~~~~~~ 302 (430)
.. ..|.+|| ..+++....+ ..|.+.+. .++|+|+|+.|+. .+..+| .|.+||+.++...
T Consensus 272 ~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~- 350 (719)
T 1z68_A 272 KRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAI- 350 (719)
T ss_dssp ESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCE-
T ss_pred ccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceE-
Confidence 32 3488899 8777765555 35666676 8899999996655 232455 5777787765421
Q ss_pred EEeecccCCccceEEEEEcCCCCEEEEEccC-----CcEEEEEcCC--CCe-eccc----ccccCCeeEEEEcCCCcEEE
Q 014125 303 YKLYRSSEHTNQRILFDIEPSGRHLGTGGQD-----GLVHIYDLQT--GKW-ISGF----QAAADTVNGFSFHPFLPMAA 370 (430)
Q Consensus 303 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~--~~~-~~~~----~~~~~~v~~~~~~~~~~~l~ 370 (430)
.+ ..+...+..+.++ +++.|+..+.+ +.+++|.+.. +.. ...+ .+|...+..+.|+|++++++
T Consensus 351 -~l---t~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~ 425 (719)
T 1z68_A 351 -QI---TSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYA 425 (719)
T ss_dssp -EC---SCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEE
T ss_pred -ec---ccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEE
Confidence 22 2334456676767 77776655554 7788888764 321 1222 23566788999999999777
Q ss_pred Ee-eCC--ceeeecCC
Q 014125 371 SS-SGH--RRFPVDDF 383 (430)
Q Consensus 371 s~-~~d--~~~~vw~~ 383 (430)
.. +.. ..+.+|+.
T Consensus 426 ~~~s~~~~p~~~l~d~ 441 (719)
T 1z68_A 426 LVCYGPGIPISTLHDG 441 (719)
T ss_dssp EEECCBSSCEEEEECS
T ss_pred EEcCCCCCCeEEEEEC
Confidence 54 332 34556653
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.86 E-value=9.2e-20 Score=177.75 Aligned_cols=281 Identities=12% Similarity=0.073 Sum_probs=171.9
Q ss_pred ceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceE
Q 014125 62 FLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF 141 (430)
Q Consensus 62 ~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 141 (430)
...+++|+|||++|+++ ||+|++||+.+++....+..+.. .........++| ||||+.|
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~-------Spdg~~l 76 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTF------------DEFGHSINDYSI-------SPDGQFI 76 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTT------------TTCCSCCCEEEE-------CTTSSEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhh------------hhhcccccceEE-------CCCCCEE
Confidence 36689999999999986 89999999988753211111110 000011223556 8899999
Q ss_pred EEEeCC---------CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccc
Q 014125 142 ASTTRD---------HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYS 212 (430)
Q Consensus 142 ~~~~~d---------g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~ 212 (430)
+.++.+ +.+.+||+.+++... +..+. ..+...+|||||+.|+.+.++.|++|++..+........
T Consensus 77 ~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~-l~~~~-----~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~lt~~ 150 (740)
T 4a5s_A 77 LLEYNYVKQWRHSYTASYDIYDLNKRQLIT-EERIP-----NNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWT 150 (740)
T ss_dssp EEEEEEEECSSSCEEEEEEEEETTTTEECC-SSCCC-----TTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSC
T ss_pred EEEECCeeeEEEccceEEEEEECCCCcEEE-cccCC-----CcceeeEECCCCCEEEEEECCeEEEEECCCCceEEEcCC
Confidence 998876 567799999987543 22222 268899999999999977889999999876432110000
Q ss_pred c-ccCCCCCCC---------cceEEEEEcCCCCceEEEecCC------------------------------------Ce
Q 014125 213 T-LKGNKEGQA---------GIMSAIAFSPTHTGMLAIGSYS------------------------------------QT 246 (430)
Q Consensus 213 ~-~~~~~~~~~---------~~v~~~~~~~~~~~~l~~~~~d------------------------------------g~ 246 (430)
. ......++. +....+.|+|| ++.|+.++.| .+
T Consensus 151 g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpD-g~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~ 229 (740)
T 4a5s_A 151 GKEDIIYNGITDWVYEEEVFSAYSALWWSPN-GTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVK 229 (740)
T ss_dssp CBTTTEEESBCCHHHHHHTSSSSBCEEECTT-SSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEE
T ss_pred CCccceecCcccccccchhcCCCcceEECCC-CCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeE
Confidence 0 000001111 12245899995 4556655321 15
Q ss_pred EEEEEcCC---ce--eeEEee------ccccCeEEEEEccCCCEEEEEecC---CCeEEEEeCCCCc----eEE-EEeec
Q 014125 247 SAIYREDN---ME--LLYVLH------GQEGGVTHVQFSRDGNYLYTGGRK---DPYILCWDLRKAV----QVV-YKLYR 307 (430)
Q Consensus 247 v~~~d~~~---~~--~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~~---d~~i~i~d~~~~~----~~~-~~~~~ 307 (430)
|++||+.+ ++ ....+. +|...+..++|+|||+.++..... +..|++||+.++. ... ..+.
T Consensus 230 l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~- 308 (740)
T 4a5s_A 230 FFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHI- 308 (740)
T ss_dssp EEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEE-
T ss_pred EEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEee-
Confidence 88899988 63 222333 266779999999999976655412 2379999998875 110 0000
Q ss_pred ccCCccce-----EEEEEcCCCCEEE-EEcc-C--CcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEee
Q 014125 308 SSEHTNQR-----ILFDIEPSGRHLG-TGGQ-D--GLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSS 373 (430)
Q Consensus 308 ~~~~~~~v-----~~~~~~~~~~~l~-~~~~-d--g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 373 (430)
...+...+ ....|+|||+.|+ ..+. + ..|++||+.+++...... ....|..+.+ ++++.|+..+
T Consensus 309 ~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~-g~~~v~~~~~-~d~~~i~f~~ 381 (740)
T 4a5s_A 309 EMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITK-GTWEVIGIEA-LTSDYLYYIS 381 (740)
T ss_dssp EECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCC-SSSCEEEEEE-ECSSEEEEEE
T ss_pred eccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEeccc-CCEEEEEEEE-EeCCEEEEEE
Confidence 02233333 3678999999876 5553 3 358899998776554333 3445555542 3355444433
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.4e-19 Score=163.53 Aligned_cols=273 Identities=11% Similarity=0.052 Sum_probs=172.7
Q ss_pred CceeEEEECcCCceEEEecCC---CeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCC
Q 014125 61 NFLKGIKWSPDGSSFLTSSED---KTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT 137 (430)
Q Consensus 61 ~~v~~~~~sp~~~~l~s~~~d---g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 137 (430)
..+.+++|||||++|+.+... ..|.+||+.+++.. .+..........+.| +|+
T Consensus 36 ~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~-----------------~l~~~~~~~~~~~~~-------spd 91 (396)
T 3c5m_A 36 NYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAV-----------------QLTEGKGDNTFGGFI-------STD 91 (396)
T ss_dssp CCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEE-----------------ECCCSSCBCTTTCEE-------CTT
T ss_pred eeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEE-----------------EeecCCCCccccceE-------CCC
Confidence 347889999999998877543 46888888765321 011111111223566 889
Q ss_pred CceEEEEeCCCcEEEEeccCCceeeeeeccccccccc-ceE-------------EEEECCCCcEEEE------EcCCeEE
Q 014125 138 SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEIT-AAF-------------SVAFNPTGTKIFA------GYNKSVR 197 (430)
Q Consensus 138 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-~v~-------------~~~~~~~~~~l~~------~~d~~i~ 197 (430)
|+.|+.++.++.|++||+.+++.......+......+ .+. .+.|+|+++.++. ..+..|.
T Consensus 92 g~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~ 171 (396)
T 3c5m_A 92 ERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLI 171 (396)
T ss_dssp SSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEE
T ss_pred CCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEE
Confidence 9999999999999999999887665554332200000 000 0356788876652 3456899
Q ss_pred EEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCC------CeEEEEEcCCceeeEEeecc-ccCeEE
Q 014125 198 VFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS------QTSAIYREDNMELLYVLHGQ-EGGVTH 270 (430)
Q Consensus 198 v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~v~~~d~~~~~~~~~~~~~-~~~i~~ 270 (430)
+||+..+.. . .+ ..+...+..+.|+|+++..|+..+.+ ..|.+||+..++........ ...+..
T Consensus 172 ~~d~~~g~~--~---~~----~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~ 242 (396)
T 3c5m_A 172 KVDIETGEL--E---VI----HQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTH 242 (396)
T ss_dssp EEETTTCCE--E---EE----EEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEE
T ss_pred EEECCCCcE--E---ee----ccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccc
Confidence 999876321 1 11 12345688999999333444443333 46888998765543333311 235788
Q ss_pred EEEccCCCEEEEEecCC----CeEEEEeCCCCceEEEEeecccCCccceEEEEEcC-CCCEEEEEc--------------
Q 014125 271 VQFSRDGNYLYTGGRKD----PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEP-SGRHLGTGG-------------- 331 (430)
Q Consensus 271 ~~~~~~~~~l~~~~~~d----~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~-------------- 331 (430)
++|+|+|+.|+.++..+ +.|++||+.++...... .... .. +.|+| +|+++++++
T Consensus 243 ~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~--~~~~----~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~ 315 (396)
T 3c5m_A 243 EFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVM--VMPP----CS-HLMSNFDGSLMVGDGCDAPVDVADADSYN 315 (396)
T ss_dssp EEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEE--ECCS----EE-EEEECSSSSEEEEEECCC----------C
T ss_pred eEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEee--eCCC----CC-CCccCCCCceEEEecCCcceeeccccccc
Confidence 99999999887775222 45999999877533211 1111 22 88999 999888754
Q ss_pred --cCCcEEEEEcCCCCeecccccccC-----------CeeEEEEcCCCcEEEEeeC
Q 014125 332 --QDGLVHIYDLQTGKWISGFQAAAD-----------TVNGFSFHPFLPMAASSSG 374 (430)
Q Consensus 332 --~dg~i~vwd~~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~l~s~~~ 374 (430)
.++.|++||+.+++. ..+..+.. .+..++|+|+|+.|+.++.
T Consensus 316 ~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~ 370 (396)
T 3c5m_A 316 IENDPFLYVLNTKAKSA-QKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSD 370 (396)
T ss_dssp CCCCCEEEEEETTTTBC-CEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEEC
T ss_pred cCCCCcEEEEecccCce-EEccCCCCccccccccccCCCCCceEccCCCeEEEEec
Confidence 346799999988764 34444443 2567899999998887764
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.84 E-value=1.3e-18 Score=154.30 Aligned_cols=281 Identities=7% Similarity=-0.008 Sum_probs=186.0
Q ss_pred CCceEEEec------CCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEE
Q 014125 71 DGSSFLTSS------EDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFAST 144 (430)
Q Consensus 71 ~~~~l~s~~------~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 144 (430)
++++++... .|+.|.+||..+++....+ .. ...+ .++| +|++++++++
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i----------------~~-g~~p--~i~~-------spdg~~lyv~ 67 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMV----------------PT-AFNG--HVQV-------SNDGKKIYTM 67 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEE----------------EC-CEEE--EEEE-------CTTSSEEEEE
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEe----------------cC-CCCC--ceEE-------CCCCCEEEEE
Confidence 455555442 4789999998876432111 11 1122 5666 8899999988
Q ss_pred eC----------CCcEEEEeccCCceeeeeeccccc-ccccceEEEEECCCCcEEEEE-c--CCeEEEEEcCCCCCcccc
Q 014125 145 TR----------DHPIHLWDATTGLLRCTYRAYDAV-DEITAAFSVAFNPTGTKIFAG-Y--NKSVRVFDVHRPGRDFEK 210 (430)
Q Consensus 145 ~~----------dg~i~vwd~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~-~--d~~i~v~d~~~~~~~~~~ 210 (430)
.. ++.|.+||+.+.+.+..+...... ........++++|+|++|+++ . ++.|.+||+.+...
T Consensus 68 ~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~---- 143 (361)
T 2oiz_A 68 TTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDY---- 143 (361)
T ss_dssp EEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEE----
T ss_pred EecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcE----
Confidence 63 677999999998888877653211 111245689999999999855 2 58999999986411
Q ss_pred ccc-ccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCC-ceeeEE------eeccccCeEEEEEccCCCEEEE
Q 014125 211 YST-LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN-MELLYV------LHGQEGGVTHVQFSRDGNYLYT 282 (430)
Q Consensus 211 ~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~-~~~~~~------~~~~~~~i~~~~~~~~~~~l~~ 282 (430)
... +. . .....+.+.|++...+++.+.||.+.+|+... ++.... +.....+ ..+.++|++..++.
T Consensus 144 ~~~~i~----~--~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~ 216 (361)
T 2oiz_A 144 VEDVTA----A--AGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHF 216 (361)
T ss_dssp EEEEGG----G--TTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEE
T ss_pred EEEEec----C--CCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCc-eEEEecccCCEEEE
Confidence 111 11 0 11223567786667888899999999999865 444311 2222222 23445678888887
Q ss_pred EecCCCeEEEEeCCCCceEEEEeecccC--------CccceEEEEEcCCCCEEEEEcc-----------CCcEEEEEcCC
Q 014125 283 GGRKDPYILCWDLRKAVQVVYKLYRSSE--------HTNQRILFDIEPSGRHLGTGGQ-----------DGLVHIYDLQT 343 (430)
Q Consensus 283 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~-----------dg~i~vwd~~~ 343 (430)
.+ .++.|.++|+............... .......++|+|+++.++++.. .+.|.+||+.+
T Consensus 217 ~~-~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t 295 (361)
T 2oiz_A 217 VS-YYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKT 295 (361)
T ss_dssp EB-TTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTT
T ss_pred Ee-CCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCC
Confidence 77 8899999999765432211111000 0111123689999888776643 34799999999
Q ss_pred CCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCCCccccccCCCcEEEEeeccc--cccccc
Q 014125 344 GKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYA--SMMENA 409 (430)
Q Consensus 344 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~--~~~~~~ 409 (430)
++.+..+..+. +.+++|+|+|++|++++ . +.|++||...+ +.+..+
T Consensus 296 ~~~v~~i~~~~--p~~ia~spdg~~l~v~n-----------------~-~~v~v~D~~t~~l~~~~~i 343 (361)
T 2oiz_A 296 KQRVARIPGRD--ALSMTIDQQRNLMLTLD-----------------G-GNVNVYDISQPEPKLLRTI 343 (361)
T ss_dssp TEEEEEEECTT--CCEEEEETTTTEEEEEC-----------------S-SCEEEEECSSSSCEEEEEE
T ss_pred CcEEEEEecCC--eeEEEECCCCCEEEEeC-----------------C-CeEEEEECCCCcceeeEEe
Confidence 99999998776 99999999999888775 2 77888888887 766664
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.8e-17 Score=145.35 Aligned_cols=242 Identities=10% Similarity=0.083 Sum_probs=169.2
Q ss_pred CeeeeeeeccccCccCCCCceEEEEeCC------------------------CcEEEEeccCCceeeeeecccccccccc
Q 014125 120 ESVYDFCWFPHMSASDPTSCVFASTTRD------------------------HPIHLWDATTGLLRCTYRAYDAVDEITA 175 (430)
Q Consensus 120 ~~v~~~~~~~~~~~~~~~~~~l~~~~~d------------------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~ 175 (430)
..+.++++ +++|+++++...+ +.|.+||..+++....+... ....
T Consensus 24 ~~v~~va~-------d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~----~~~~ 92 (329)
T 3fvz_A 24 GQVSGVAL-------DSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKN----LFYL 92 (329)
T ss_dssp SCEEEEEE-------CTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTT----TCSS
T ss_pred CCceEEEE-------CCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCC----ccCC
Confidence 56888888 7789999888777 47999999988876654421 2226
Q ss_pred eEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccccccc--cCCCCCCCcceEEEEEcCCCCceEEEec-CCCeEEEEE
Q 014125 176 AFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTL--KGNKEGQAGIMSAIAFSPTHTGMLAIGS-YSQTSAIYR 251 (430)
Q Consensus 176 v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~v~~~d 251 (430)
+..++++|+|.++++. .++.|++|+..........+... ......+......++++|+++.++++.+ .++.|++|+
T Consensus 93 p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~ 172 (329)
T 3fvz_A 93 PHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS 172 (329)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC
T ss_pred ceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc
Confidence 7899999999977776 67899999975431111111110 0011233446899999996677778776 699999999
Q ss_pred cCCceeeEEeec----------cccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEc
Q 014125 252 EDNMELLYVLHG----------QEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIE 321 (430)
Q Consensus 252 ~~~~~~~~~~~~----------~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~ 321 (430)
.+++.+..+.. +......++++|++..|+++...++.|++||..++... ..+ ....+...+..++++
T Consensus 173 -~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~-~~~-~~~~~~~~~~~~~~~ 249 (329)
T 3fvz_A 173 -PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFV-REI-KHASFGRNVFAISYI 249 (329)
T ss_dssp -TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEE-CCTTTTTCEEEEEEE
T ss_pred -CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEE-EEE-eccccCCCcceeeec
Confidence 45666666542 22348899999995555555558999999999865433 222 223455678899999
Q ss_pred C------CCCEEEEEccCCcEEEEEcCCCCeecccc---cccCCeeEEEEcCCCcEEEEeeCC
Q 014125 322 P------SGRHLGTGGQDGLVHIYDLQTGKWISGFQ---AAADTVNGFSFHPFLPMAASSSGH 375 (430)
Q Consensus 322 ~------~~~~l~~~~~dg~i~vwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~s~~~d 375 (430)
| +|+..++...+..|++|++.+++.+..+. ++...+.+|+++|+|.++++...+
T Consensus 250 pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~ 312 (329)
T 3fvz_A 250 PGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHT 312 (329)
T ss_dssp TTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSS
T ss_pred CCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCC
Confidence 9 33333333345689999999999988873 566679999999999777777643
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.83 E-value=3.4e-18 Score=166.69 Aligned_cols=242 Identities=12% Similarity=0.083 Sum_probs=162.7
Q ss_pred eeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cC------
Q 014125 121 SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN------ 193 (430)
Q Consensus 121 ~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d------ 193 (430)
....++| +|++.+++++ ||.|++||+.+++....+..+...........+.|||||++|+.+ .+
T Consensus 18 ~~~~~~w-------~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~ 88 (740)
T 4a5s_A 18 KLYSLRW-------ISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRH 88 (740)
T ss_dssp CCCCEEE-------CSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSS
T ss_pred cccccEE-------CCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEE
Confidence 4567888 7789888886 999999999999887776665432222223458999999999855 33
Q ss_pred ---CeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEe-eccccCe-
Q 014125 194 ---KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVL-HGQEGGV- 268 (430)
Q Consensus 194 ---~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~-~~~~~~i- 268 (430)
+.+.+||+.++. .. .+..+...+...+|+|++ +.||.+ .++.|++|++.+++..+.. .++...+
T Consensus 89 ~~~~~~~~~d~~~~~--------~~-~l~~~~~~~~~~~~SPdG-~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~ 157 (740)
T 4a5s_A 89 SYTASYDIYDLNKRQ--------LI-TEERIPNNTQWVTWSPVG-HKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIY 157 (740)
T ss_dssp CEEEEEEEEETTTTE--------EC-CSSCCCTTEEEEEECSST-TCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEE
T ss_pred ccceEEEEEECCCCc--------EE-EcccCCCcceeeEECCCC-CEEEEE-ECCeEEEEECCCCceEEEcCCCCcccee
Confidence 677899998742 11 124455679999999954 566666 4789999999887654322 2222222
Q ss_pred ----------------EEEEEccCCCEEEEEecCCC-----------------------------------eEEEEeCCC
Q 014125 269 ----------------THVQFSRDGNYLYTGGRKDP-----------------------------------YILCWDLRK 297 (430)
Q Consensus 269 ----------------~~~~~~~~~~~l~~~~~~d~-----------------------------------~i~i~d~~~ 297 (430)
..+.|||||+.|+.....++ .|++||+.+
T Consensus 158 ~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~ 237 (740)
T 4a5s_A 158 NGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDS 237 (740)
T ss_dssp ESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTS
T ss_pred cCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCC
Confidence 35899999999988752222 578888877
Q ss_pred ---Cce-EEEEeecc---cCCccceEEEEEcCCCCEEEEEcc----CCcEEEEEcCCCC----ee--ccc--ccccCCee
Q 014125 298 ---AVQ-VVYKLYRS---SEHTNQRILFDIEPSGRHLGTGGQ----DGLVHIYDLQTGK----WI--SGF--QAAADTVN 358 (430)
Q Consensus 298 ---~~~-~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~vwd~~~~~----~~--~~~--~~~~~~v~ 358 (430)
+.. ....+... .++...+..++|+|||+.++.... +..|++||+.+++ +. ..+ ..|...|.
T Consensus 238 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~ 317 (740)
T 4a5s_A 238 LSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVG 317 (740)
T ss_dssp CCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSS
T ss_pred CCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEc
Confidence 521 11122110 136677899999999997665533 3469999999987 32 222 34555554
Q ss_pred -----EEEEcCCCcEEE-EeeC-Cc--eeeecC
Q 014125 359 -----GFSFHPFLPMAA-SSSG-HR--RFPVDD 382 (430)
Q Consensus 359 -----~~~~~~~~~~l~-s~~~-d~--~~~vw~ 382 (430)
.++|+|||+.|+ ..+. +| .|.+|+
T Consensus 318 ~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~ 350 (740)
T 4a5s_A 318 RFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQ 350 (740)
T ss_dssp SSSCCCCEECTTSSEEEEEEECTTSCEEEEEEE
T ss_pred cCcCCCceEcCCCCEEEEEEEcCCCceEEEEEE
Confidence 789999999776 5553 44 455554
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.82 E-value=5.6e-18 Score=163.54 Aligned_cols=289 Identities=11% Similarity=0.101 Sum_probs=182.6
Q ss_pred ecccCCCceeEEEECcCCceEEEe--cCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeee---------
Q 014125 55 TSSIPNNFLKGIKWSPDGSSFLTS--SEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVY--------- 123 (430)
Q Consensus 55 ~~~~h~~~v~~~~~sp~~~~l~s~--~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--------- 123 (430)
.+.+|...|..++|++++-++++. +.++...||....+.....+ ..+...+.
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l-----------------~~~~~~~~~~~~~~~~~ 80 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESA-----------------LPAPWNVRNRVFEYSGF 80 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEES-----------------SCTTCCBCCCGGGTCCC
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCccee-----------------CCCCccccccccccCCc
Confidence 567899999999999987777777 66889999986433211111 11112222
Q ss_pred eeeeccccCccCCCCce-EEEEeC-CCcEEEEecc--C-CceeeeeecccccccccceEEEEECCCCcEEEE-EcC----
Q 014125 124 DFCWFPHMSASDPTSCV-FASTTR-DHPIHLWDAT--T-GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYN---- 193 (430)
Q Consensus 124 ~~~~~~~~~~~~~~~~~-l~~~~~-dg~i~vwd~~--~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d---- 193 (430)
...|.. ||||+. |+.++. +..|.++++. . +. ...+.......+...+..++|+|||+.|+. +.+
T Consensus 81 ~~~~~~-----SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~ 154 (662)
T 3azo_A 81 PWAGVP-----RPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGE 154 (662)
T ss_dssp CEEEEC-----CSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSS
T ss_pred cceeee-----ecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCC
Confidence 334421 488988 776554 5667777765 2 43 333333110012236789999999999884 444
Q ss_pred ------CeEEEEEcCCCC----CcccccccccCCCC-CCCcceEEEEEcCCCCceEEEecCC--------CeEEEEEcC-
Q 014125 194 ------KSVRVFDVHRPG----RDFEKYSTLKGNKE-GQAGIMSAIAFSPTHTGMLAIGSYS--------QTSAIYRED- 253 (430)
Q Consensus 194 ------~~i~v~d~~~~~----~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d--------g~v~~~d~~- 253 (430)
..|++||+.... ... ..+ . .+...+..++|+|+ ++.|+.++.+ ..|++||+.
T Consensus 155 ~~~~~~~~i~~~~~~~~~~~~~~~~---~~l----~~~~~~~~~~~~~SpD-G~~la~~~~~~~~~~~~~~~i~~~d~~~ 226 (662)
T 3azo_A 155 GPSDVRRFLAAVPLDGSAAADRSAV---REL----SDDAHRFVTGPRLSPD-GRQAVWLAWDHPRMPWEGTELKTARVTE 226 (662)
T ss_dssp STTCEEEEEEEEETTSTTTTCGGGS---EES----SCSCSSEECCCEECTT-SSEEEEEEECTTCCTTTCEEEEEEEECT
T ss_pred CCCCceeEEEEEECCCCccccCCce---eEE----EecCCCcccCceECCC-CCEEEEEECCCCCCCCCCcEEEEEEECC
Confidence 579999987621 111 111 2 33356778899995 5566655543 479999998
Q ss_pred Cc---eeeEEeeccccCeEEEEEccCCCEEEEEecCCC--eEEEEeCCCCceEEEEeecccCCccc--------eEEEEE
Q 014125 254 NM---ELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDP--YILCWDLRKAVQVVYKLYRSSEHTNQ--------RILFDI 320 (430)
Q Consensus 254 ~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~--------v~~~~~ 320 (430)
++ +.......+...+..++|+|||++++++. .++ .|.+||+.++... .+.. .+... +..++|
T Consensus 227 ~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~-~~~~~~l~~~~~~~~~~~--~l~~--~~~~~~~p~w~~~~~~~~~ 301 (662)
T 3azo_A 227 DGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATD-RTGWWNLHRVDPATGAAT--QLCR--REEEFAGPLWTPGMRWFAP 301 (662)
T ss_dssp TSCEEEEEEEEEETTBCEEEEEECTTSCEEEEEC-TTSSCEEEEECTTTCCEE--ESSC--CSSBSSCCCCSTTCCSEEE
T ss_pred CCcccccEEeCCCCCceEcceEECCCCeEEEEEC-CCCCeEEEEEECCCCcee--eccc--ccccccCccccccCceEeE
Confidence 56 44444444568899999999999666666 778 6777776555322 2211 11111 456899
Q ss_pred cCCCCEEEEEccCCcEEEE--EcCCCCeecccccccCCeeEE-EEcCCCcEEEEeeCCceeeec
Q 014125 321 EPSGRHLGTGGQDGLVHIY--DLQTGKWISGFQAAADTVNGF-SFHPFLPMAASSSGHRRFPVD 381 (430)
Q Consensus 321 ~~~~~~l~~~~~dg~i~vw--d~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~s~~~d~~~~vw 381 (430)
+|+++++++++. +.++|| |+.+++ +..+..|...+..+ +++++.-++++++.+....+|
T Consensus 302 ~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~ 363 (662)
T 3azo_A 302 LANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVV 363 (662)
T ss_dssp CTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred eCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEE
Confidence 999999999998 999999 555554 66777777777777 555444455555655544444
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-17 Score=147.28 Aligned_cols=273 Identities=11% Similarity=0.050 Sum_probs=184.1
Q ss_pred CceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCce
Q 014125 61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV 140 (430)
Q Consensus 61 ~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (430)
..|.++.|+|++..++..+.++.++.|.-. . ......+...+.+++| ++++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-----------------~~~~~~~~~~~~~~~~-------~~~g~l 58 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTITAE---P-----------------WLEISKKGLQLEGLNF-------DRQGQL 58 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEECE---E-----------------EEEEESSCCCEEEEEE-------CTTSCE
T ss_pred cccceeeecCCccceeEEeecccCcccccc---e-----------------eEEEeccCccccCcEE-------CCCCCE
Confidence 347888999998888877888888888221 0 0111223345677888 678888
Q ss_pred EEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEc-C----CeEEEEEcCCCCCccccccccc
Q 014125 141 FASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGY-N----KSVRVFDVHRPGRDFEKYSTLK 215 (430)
Q Consensus 141 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d----~~i~v~d~~~~~~~~~~~~~~~ 215 (430)
++++..++.|.+||..+++......... ..+.+++++|++++++++. + +.|.+||....... .. ..
T Consensus 59 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~-----~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~--~~--~~ 129 (333)
T 2dg1_A 59 FLLDVFEGNIFKINPETKEIKRPFVSHK-----ANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQ--DI--IE 129 (333)
T ss_dssp EEEETTTCEEEEECTTTCCEEEEEECSS-----SSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCE--EE--EC
T ss_pred EEEECCCCEEEEEeCCCCcEEEEeeCCC-----CCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEE--EE--Ec
Confidence 8888889999999998887655442222 2788999999999888764 4 58999998753221 00 10
Q ss_pred CCCCCCCcceEEEEEcCCCCceEEEecC------CCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCe
Q 014125 216 GNKEGQAGIMSAIAFSPTHTGMLAIGSY------SQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPY 289 (430)
Q Consensus 216 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~------dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~ 289 (430)
. ......+..++++| ++.++++... .+.|..+|..+++... +......+..++|+|+++.|+++...++.
T Consensus 130 ~--~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~ 205 (333)
T 2dg1_A 130 D--LSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTETTANR 205 (333)
T ss_dssp S--SSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEGGGTE
T ss_pred c--CccCCcccceEECC-CCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeCCCCe
Confidence 0 12335689999999 4556665543 3567777766554433 22334567899999999977766546889
Q ss_pred EEEEeCCCC-ceEE----EEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccC------Cee
Q 014125 290 ILCWDLRKA-VQVV----YKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAAD------TVN 358 (430)
Q Consensus 290 i~i~d~~~~-~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~------~v~ 358 (430)
|.+||+.+. .... ........+ ..+..++++++|+++++...++.|.+||. +++.+..+..+.. .+.
T Consensus 206 i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~ 283 (333)
T 2dg1_A 206 LHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRST 283 (333)
T ss_dssp EEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCC
T ss_pred EEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcc
Confidence 999999642 2111 011111112 46778999999998888777889999998 4666666554432 689
Q ss_pred EEEEcCCCcEEEEeeCC
Q 014125 359 GFSFHPFLPMAASSSGH 375 (430)
Q Consensus 359 ~~~~~~~~~~l~s~~~d 375 (430)
+++|+|++..|+.++.+
T Consensus 284 ~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 284 HPQFIPGTNQLIICSND 300 (333)
T ss_dssp EEEECTTSCEEEEEEEC
T ss_pred eEEECCCCCEEEEEeCc
Confidence 99999998777655544
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=5.5e-17 Score=139.52 Aligned_cols=238 Identities=10% Similarity=0.145 Sum_probs=164.2
Q ss_pred CeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeeccc-ccccccceEEEEE-CCCCcEEEEEc--CCe
Q 014125 120 ESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYD-AVDEITAAFSVAF-NPTGTKIFAGY--NKS 195 (430)
Q Consensus 120 ~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~v~~~~~-~~~~~~l~~~~--d~~ 195 (430)
....++++ ++++.++++...++.|.+||.. ++....+.... ...+...+..+++ .+++.++++.. ++.
T Consensus 30 ~~p~~v~~-------~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~ 101 (286)
T 1q7f_A 30 TEPSGVAV-------NAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQ 101 (286)
T ss_dssp SCEEEEEE-------CTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCE
T ss_pred CCCceEEE-------CCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCE
Confidence 35666777 7788888888889999999987 55555554321 1112236789999 57787777763 899
Q ss_pred EEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEee--ccccCeEEEEE
Q 014125 196 VRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH--GQEGGVTHVQF 273 (430)
Q Consensus 196 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~--~~~~~i~~~~~ 273 (430)
|.+||... .... .+. ..+...+..++++| +++++++...++.|.+||.. ++.+..+. .+...+..+++
T Consensus 102 i~~~d~~g--~~~~---~~~---~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~ 171 (286)
T 1q7f_A 102 IQIYNQYG--QFVR---KFG---ATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVV 171 (286)
T ss_dssp EEEECTTS--CEEE---EEC---TTTCSCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEE
T ss_pred EEEECCCC--cEEE---Eec---CccCCCceEEEEeC-CCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEE
Confidence 99999432 1111 111 12334688999999 55688887888999999964 55555553 34456899999
Q ss_pred ccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCC-cEEEEEcCCCCeeccccc
Q 014125 274 SRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDG-LVHIYDLQTGKWISGFQA 352 (430)
Q Consensus 274 ~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~ 352 (430)
+|+|+.+++.. .++.|++||.... . ...+ ...++...+..++++|+|+++++...++ .|.+||. +++.+..+..
T Consensus 172 ~~~g~l~v~~~-~~~~i~~~~~~g~-~-~~~~-~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~ 246 (286)
T 1q7f_A 172 NDKQEIFISDN-RAHCVKVFNYEGQ-Y-LRQI-GGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALES 246 (286)
T ss_dssp CSSSEEEEEEG-GGTEEEEEETTCC-E-EEEE-SCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEE
T ss_pred CCCCCEEEEEC-CCCEEEEEcCCCC-E-EEEE-ccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcc
Confidence 99998666555 7899999998543 2 2222 1122335788999999999888888776 9999995 4677776665
Q ss_pred ccC--CeeEEEEcCCCcEEEEeeCCceeeec
Q 014125 353 AAD--TVNGFSFHPFLPMAASSSGHRRFPVD 381 (430)
Q Consensus 353 ~~~--~v~~~~~~~~~~~l~s~~~d~~~~vw 381 (430)
+.. .+.+++++|+|+++++ +.++.|++|
T Consensus 247 ~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~ 276 (286)
T 1q7f_A 247 KVKHAQCFDVALMDDGSVVLA-SKDYRLYIY 276 (286)
T ss_dssp SSCCSCEEEEEEETTTEEEEE-ETTTEEEEE
T ss_pred cCCCCcceeEEECCCCcEEEE-CCCCeEEEE
Confidence 443 4779999999987777 444444444
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.82 E-value=2.9e-17 Score=145.64 Aligned_cols=275 Identities=15% Similarity=0.094 Sum_probs=176.1
Q ss_pred cccCCCceeEEEECcCCceEEEec----------CCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeee
Q 014125 56 SSIPNNFLKGIKWSPDGSSFLTSS----------EDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDF 125 (430)
Q Consensus 56 ~~~h~~~v~~~~~sp~~~~l~s~~----------~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 125 (430)
+..+..+ .++|+|||++|+++. .++.|.+||..+.+....+.... ....++.....+
T Consensus 47 i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~-----------~~~~~g~~p~~i 113 (361)
T 2oiz_A 47 VPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPP-----------KRVQGLNYDGLF 113 (361)
T ss_dssp EECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECT-----------TBCCBCCCGGGE
T ss_pred ecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCc-----------cccccCCCcceE
Confidence 3344444 899999999999886 36789999998664432221110 000012234445
Q ss_pred eeccccCccCCCCceEEEEeC--CCcEEEEeccCCceeee-eecccccccccceEEEEECCCC-cEEE-EEcCCeEEEEE
Q 014125 126 CWFPHMSASDPTSCVFASTTR--DHPIHLWDATTGLLRCT-YRAYDAVDEITAAFSVAFNPTG-TKIF-AGYNKSVRVFD 200 (430)
Q Consensus 126 ~~~~~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~-~~l~-~~~d~~i~v~d 200 (430)
++ +|+|++|+++.. ++.|.+||+.+++.+.. +... ....+.+.|++ ..++ .+.||.+.+|+
T Consensus 114 ~~-------spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~-------~~~~v~~~p~~~~~~~~~~~dg~~~~v~ 179 (361)
T 2oiz_A 114 RQ-------TTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA-------GCWSVIPQPNRPRSFMTICGDGGLLTIN 179 (361)
T ss_dssp EE-------CTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT-------TEEEEEECTTSSSEEEEEETTSSEEEEE
T ss_pred EE-------CCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC-------CcceeEEcCCCCeeEEEECCCCcEEEEE
Confidence 55 889999998874 57899999999987766 4432 12235567766 3333 56889999998
Q ss_pred cCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCcee--eEEeec------c----ccCe
Q 014125 201 VHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL--LYVLHG------Q----EGGV 268 (430)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~--~~~~~~------~----~~~i 268 (430)
+...+....... ..........++ .+.++|++ ..++..+.++.|.++|+..... ...+.. + ....
T Consensus 180 ~~~~g~~~~~~~-~~~~~~~~~~~~-~~~~~~~g-~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~ 256 (361)
T 2oiz_A 180 LGEDGKVASQSR-SKQMFSVKDDPI-FIAPALDK-DKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGY 256 (361)
T ss_dssp ECTTSSEEEEEE-CCCCSCTTTSCB-CSCCEECS-SEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCS
T ss_pred ECCCCcEeeecc-ccceEcCCCCce-EEEecccC-CEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCe
Confidence 865332211100 000111111111 23335533 4555566789999999875432 122110 0 1112
Q ss_pred EEEEEccCCCEEEEEec----------CCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEE
Q 014125 269 THVQFSRDGNYLYTGGR----------KDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHI 338 (430)
Q Consensus 269 ~~~~~~~~~~~l~~~~~----------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v 338 (430)
..++|+|+++.++++.. ..+.|.+||+.+.+.. ..+ ..+. +..++|+|+|++|++++. +.|.+
T Consensus 257 ~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v-~~i---~~~~--p~~ia~spdg~~l~v~n~-~~v~v 329 (361)
T 2oiz_A 257 NLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRV-ARI---PGRD--ALSMTIDQQRNLMLTLDG-GNVNV 329 (361)
T ss_dssp SCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEE-EEE---ECTT--CCEEEEETTTTEEEEECS-SCEEE
T ss_pred eEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEE-EEE---ecCC--eeEEEECCCCCEEEEeCC-CeEEE
Confidence 23789999998888762 0348999999987433 333 2233 889999999999998887 99999
Q ss_pred EEcCCC--CeecccccccCCeeEEEEcCCCc
Q 014125 339 YDLQTG--KWISGFQAAADTVNGFSFHPFLP 367 (430)
Q Consensus 339 wd~~~~--~~~~~~~~~~~~v~~~~~~~~~~ 367 (430)
||+.++ +.+..+..+......++++|+|.
T Consensus 330 ~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 330 YDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred EECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 999999 88888766777889999999875
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=4.1e-17 Score=143.11 Aligned_cols=256 Identities=11% Similarity=0.097 Sum_probs=174.2
Q ss_pred CceeEEEECcCCceEEEecCC------------------------CeEEEEeCCCCCCcccccccccccccCcccceeee
Q 014125 61 NFLKGIKWSPDGSSFLTSSED------------------------KTLRIFSLPENGISYDVNACSLAKDQDSYEASLVV 116 (430)
Q Consensus 61 ~~v~~~~~sp~~~~l~s~~~d------------------------g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (430)
+.+.+|+++|+|+++++.+.+ +.|.+||..+++..... ..
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~----------------~~ 87 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSS----------------GK 87 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEE----------------CT
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEecc----------------CC
Confidence 458999999999999988877 46888887765432110 00
Q ss_pred cCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCc-eeeeeecccc----cccccceEEEEECC-CCcEEEE
Q 014125 117 TEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGL-LRCTYRAYDA----VDEITAAFSVAFNP-TGTKIFA 190 (430)
Q Consensus 117 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~----~~~~~~v~~~~~~~-~~~~l~~ 190 (430)
.+-.....+++ +++|+++++...++.|++|+..... .+..+..... ..+...+..++++| ++.++++
T Consensus 88 ~~~~~p~gia~-------d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~ 160 (329)
T 3fvz_A 88 NLFYLPHGLSI-------DTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVS 160 (329)
T ss_dssp TTCSSEEEEEE-------CTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEE
T ss_pred CccCCceEEEE-------CCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEE
Confidence 11234566666 7789988888889999999986542 3444422110 12233678999999 7888877
Q ss_pred E--cCCeEEEEEcCCCCCcccccccccC---CCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEee--c
Q 014125 191 G--YNKSVRVFDVHRPGRDFEKYSTLKG---NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH--G 263 (430)
Q Consensus 191 ~--~d~~i~v~d~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~--~ 263 (430)
. .++.|++|+... .....+..... ...++......++++|+++.++++...++.|++||..+++.+..+. .
T Consensus 161 d~~~~~~I~~~~~~g--~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~ 238 (329)
T 3fvz_A 161 DGYCNSRIVQFSPSG--KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHAS 238 (329)
T ss_dssp ECSSCCEEEEECTTS--CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTT
T ss_pred eCCCCCeEEEEcCCC--CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccc
Confidence 6 488999999432 21111110000 0012234588999999658888888899999999999888877774 3
Q ss_pred cccCeEEEEEccCCCEEEEEe------cCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEE
Q 014125 264 QEGGVTHVQFSRDGNYLYTGG------RKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVH 337 (430)
Q Consensus 264 ~~~~i~~~~~~~~~~~l~~~~------~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 337 (430)
+...+.+++|+| +..+.+.+ ..+..|++||..++... ..+.....+...+..++++|+|.++++...+++|+
T Consensus 239 ~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~-~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~ 316 (329)
T 3fvz_A 239 FGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEII-DVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVW 316 (329)
T ss_dssp TTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEE-EEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEE
T ss_pred cCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEE-EEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEE
Confidence 556788999999 33322222 13458999999887533 23322235667789999999998888888899999
Q ss_pred EEEcCC
Q 014125 338 IYDLQT 343 (430)
Q Consensus 338 vwd~~~ 343 (430)
+|++..
T Consensus 317 ~~~~~~ 322 (329)
T 3fvz_A 317 KFTLTE 322 (329)
T ss_dssp EEEEEE
T ss_pred EEeCCc
Confidence 999864
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.5e-16 Score=136.87 Aligned_cols=254 Identities=10% Similarity=0.119 Sum_probs=169.5
Q ss_pred cccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccC
Q 014125 56 SSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASD 135 (430)
Q Consensus 56 ~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 135 (430)
..+|-..+.+++++|+|+++++.+.++.|.+||... +....+.... ....+...+..+++. .
T Consensus 25 ~~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g-~~~~~~~~~~-----------~~~~~~~~p~~i~~~------~ 86 (286)
T 1q7f_A 25 MEGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEG-RFKFQFGECG-----------KRDSQLLYPNRVAVV------R 86 (286)
T ss_dssp STTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTS-CEEEEECCBS-----------SSTTCBSSEEEEEEE------T
T ss_pred CCCccCCCceEEECCCCCEEEEECCCCEEEEECCCC-cEEEEecccC-----------CCcccccCceEEEEE------c
Confidence 345667799999999999888888899999999763 2211110000 000111345666662 2
Q ss_pred CCCceEEEEeC-CCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCccccccc
Q 014125 136 PTSCVFASTTR-DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYST 213 (430)
Q Consensus 136 ~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~ 213 (430)
+++.++++... ++.|.+|| .+++.+..+.... ...+.+++++|+++++++. .++.|.+||... .... .
T Consensus 87 ~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~----~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g--~~~~---~ 156 (286)
T 1q7f_A 87 NSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATI----LQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG--NVLH---K 156 (286)
T ss_dssp TTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTT----CSCEEEEEECTTSCEEEEETTTTEEEEECTTS--CEEE---E
T ss_pred CCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCcc----CCCceEEEEeCCCCEEEEECCCCEEEEEcCCC--CEEE---E
Confidence 45666666643 78999999 5666665553321 1267899999999877776 678999999643 1111 1
Q ss_pred ccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeecc--ccCeEEEEEccCCCEEEEEecCCC-eE
Q 014125 214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ--EGGVTHVQFSRDGNYLYTGGRKDP-YI 290 (430)
Q Consensus 214 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~~d~-~i 290 (430)
+. ...+...+..++++| +++++++...++.|++||.. ++.+..+..+ ...+..++++++|+++++.. .++ .|
T Consensus 157 ~~--~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~-~~~~~i 231 (286)
T 1q7f_A 157 FG--CSKHLEFPNGVVVND-KQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADN-HNNFNL 231 (286)
T ss_dssp EE--CTTTCSSEEEEEECS-SSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEEC-SSSCEE
T ss_pred eC--CCCccCCcEEEEECC-CCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeC-CCCEEE
Confidence 11 012334589999999 56688888889999999974 5555555433 35789999999998777766 665 99
Q ss_pred EEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCe
Q 014125 291 LCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKW 346 (430)
Q Consensus 291 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 346 (430)
.+||.... .. ..+.. ......+..++++|+|+++++ +.|+.|++|++....+
T Consensus 232 ~~~~~~g~-~~-~~~~~-~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~p 283 (286)
T 1q7f_A 232 TIFTQDGQ-LI-SALES-KVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLAP 283 (286)
T ss_dssp EEECTTSC-EE-EEEEE-SSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCCCC
T ss_pred EEECCCCC-EE-EEEcc-cCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccccc
Confidence 99996543 22 22221 223345778999999987776 5789999999876544
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.80 E-value=8.9e-18 Score=148.82 Aligned_cols=255 Identities=12% Similarity=0.103 Sum_probs=155.4
Q ss_pred ceeEEEECcCCceE-EEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecC-----CCeeeeeeeccccCccC
Q 014125 62 FLKGIKWSPDGSSF-LTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTE-----GESVYDFCWFPHMSASD 135 (430)
Q Consensus 62 ~v~~~~~sp~~~~l-~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~ 135 (430)
.+..++|+|+|+++ +++..++.|.+||+.+++...... ..+ +..+..++| +
T Consensus 44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~----------------~~~~~~~~~~~~~~~~~-------s 100 (349)
T 1jmx_B 44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN----------------LSSVPGEVGRSMYSFAI-------S 100 (349)
T ss_dssp SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE----------------SCCSTTEEEECSSCEEE-------C
T ss_pred CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEE----------------cccccccccccccceEE-------C
Confidence 57899999999865 455678999999998764321111 111 123566667 8
Q ss_pred CCCceEEEEeCC------------CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCC
Q 014125 136 PTSCVFASTTRD------------HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHR 203 (430)
Q Consensus 136 ~~~~~l~~~~~d------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~ 203 (430)
|++++|++++.+ +.|.+||+.+++......... ....+.+++|+|+++ ++++ ++.|.+||+.+
T Consensus 101 pdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~---~~~~~~~~~~s~dg~-l~~~-~~~i~~~d~~~ 175 (349)
T 1jmx_B 101 PDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP---MPRQVYLMRAADDGS-LYVA-GPDIYKMDVKT 175 (349)
T ss_dssp TTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE---CCSSCCCEEECTTSC-EEEE-SSSEEEECTTT
T ss_pred CCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc---CCCcccceeECCCCc-EEEc-cCcEEEEeCCC
Confidence 899999998865 899999998865433222111 112577899999999 5543 34599999876
Q ss_pred CCCcccccccccCCCC-------------CCC----cceEEEEEcCCCCceEEEecCCCeEEEEEcCCcee-eEEeeccc
Q 014125 204 PGRDFEKYSTLKGNKE-------------GQA----GIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL-LYVLHGQE 265 (430)
Q Consensus 204 ~~~~~~~~~~~~~~~~-------------~~~----~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~-~~~~~~~~ 265 (430)
..... .......... ... .....+++++++............+..++..+++. ...+..+.
T Consensus 176 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (349)
T 1jmx_B 176 GKYTV-ALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLT 254 (349)
T ss_dssp CCEEE-EECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECS
T ss_pred Cceec-cccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCC
Confidence 43211 1100000000 000 02344566653211100000011122244444332 11122345
Q ss_pred cCeEEEEEcc-CCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCC
Q 014125 266 GGVTHVQFSR-DGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTG 344 (430)
Q Consensus 266 ~~i~~~~~~~-~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 344 (430)
..+..++|+| ++++++++ ++.|.+||+.+..... .+. ....+..++|+|+|++|++++.++.|++||+.++
T Consensus 255 ~~~~~~~~sp~dg~~l~~~---~~~v~~~d~~~~~~~~-~~~----~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~ 326 (349)
T 1jmx_B 255 ELYFTGLRSPKDPNQIYGV---LNRLAKYDLKQRKLIK-AAN----LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL 326 (349)
T ss_dssp SCEEEEEECSSCTTEEEEE---ESEEEEEETTTTEEEE-EEE----CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred CcceeeEecCCCCCEEEEE---cCeEEEEECccCeEEE-EEc----CCCCccceEECCCCCEEEEecCCCeEEEEecccc
Confidence 6788999999 99998887 7899999999874332 221 2234678999999999888888999999999999
Q ss_pred Ceecccccc
Q 014125 345 KWISGFQAA 353 (430)
Q Consensus 345 ~~~~~~~~~ 353 (430)
+.+..+..+
T Consensus 327 ~~~~~~~~~ 335 (349)
T 1jmx_B 327 EKVKNIKLP 335 (349)
T ss_dssp EEEEEEECS
T ss_pred ceeeeeecC
Confidence 888777644
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=5.7e-15 Score=127.68 Aligned_cols=272 Identities=10% Similarity=0.064 Sum_probs=184.1
Q ss_pred ccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCC
Q 014125 57 SIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP 136 (430)
Q Consensus 57 ~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 136 (430)
..+...+.+++++++|+++++...++.|.+||.. +... ... .......+.++++ ++
T Consensus 11 ~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~-~~~---------------~~~~~~~~~~i~~-------~~ 66 (299)
T 2z2n_A 11 TNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKIT-EYP---------------LPTPDAKVMCLTI-------SS 66 (299)
T ss_dssp CSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE-EEE---------------CSSTTCCEEEEEE-------CT
T ss_pred CCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeE-Eec---------------CCcccCceeeEEE-------CC
Confidence 3455679999999999988877778899999987 4221 000 0012245777777 67
Q ss_pred CCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCccccccccc
Q 014125 137 TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLK 215 (430)
Q Consensus 137 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~ 215 (430)
++.++++...++.|..|+.. ++. ..+.... ....+.++++++++.++++. .++.|..||. .+ . .....
T Consensus 67 ~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~---~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g-~-~~~~~--- 135 (299)
T 2z2n_A 67 DGEVWFTENAANKIGRITKK-GII-KEYTLPN---PDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DG-K-IREYE--- 135 (299)
T ss_dssp TSCEEEEETTTTEEEEECTT-SCE-EEEECSS---TTCCEEEEEECTTSCEEEEETTTTEEEEECT-TC-C-EEEEE---
T ss_pred CCCEEEeCCCCCeEEEECCC-CcE-EEEeCCC---cCCCceeeEECCCCCEEEEecCCceEEEECC-CC-C-EEEec---
Confidence 88888887778889999986 332 2232211 12267899999999888876 5789999987 32 1 11110
Q ss_pred CCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEE-eeccccCeEEEEEccCCCEEEEEecCCCeEEEEe
Q 014125 216 GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYV-LHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWD 294 (430)
Q Consensus 216 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d 294 (430)
.......+..+++++ ++.++++...++.|..||. +++.... .......+.+++++++|...++.. .++.|..||
T Consensus 136 --~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~~~~i~~~~ 210 (299)
T 2z2n_A 136 --LPNKGSYPSFITLGS-DNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEI-IGNKIGRIT 210 (299)
T ss_dssp --CSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEET-TTTEEEEEC
T ss_pred --CCCCCCCCceEEEcC-CCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEcc-CCceEEEEC
Confidence 112234688999999 5567777777889999998 6654432 333345688999999998665554 688999999
Q ss_pred CCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecc-cccccCCeeEEEEcCCCcEEEEee
Q 014125 295 LRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISG-FQAAADTVNGFSFHPFLPMAASSS 373 (430)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~s~~ 373 (430)
. ++.... . ........+..++++++|++.++...++.|.+||. +++.... +..+...+.++++ +++.+.++..
T Consensus 211 ~-~g~~~~--~-~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~ 284 (299)
T 2z2n_A 211 T-SGEITE--F-KIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAME 284 (299)
T ss_dssp T-TCCEEE--E-ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEET
T ss_pred C-CCcEEE--E-ECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEec
Confidence 9 543222 1 11234567889999999997777667889999998 4543221 2344567899999 8888777764
Q ss_pred C
Q 014125 374 G 374 (430)
Q Consensus 374 ~ 374 (430)
.
T Consensus 285 ~ 285 (299)
T 2z2n_A 285 C 285 (299)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.8e-15 Score=139.65 Aligned_cols=283 Identities=13% Similarity=0.042 Sum_probs=192.3
Q ss_pred cCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCc
Q 014125 70 PDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHP 149 (430)
Q Consensus 70 p~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~ 149 (430)
|.+.++++...++.|.++|..+++.... +..+..+..+.+ +||++++++++.|+.
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~------------------i~~g~~p~~v~~-------SpDGr~lyv~~~dg~ 219 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTV------------------LDTGYAVHISRL-------SASGRYLFVIGRDGK 219 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEE------------------EECSSCEEEEEE-------CTTSCEEEEEETTSE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEE------------------EeCCCCccceEE-------CCCCCEEEEEcCCCe
Confidence 5556777888899999999987754322 122234556666 889999999999999
Q ss_pred EEEEecc--CCceeeeeecccccccccceEEEEEC----CCCcEEEEE--cCCeEEEEEcCCCCCcccccccccCCCC--
Q 014125 150 IHLWDAT--TGLLRCTYRAYDAVDEITAAFSVAFN----PTGTKIFAG--YNKSVRVFDVHRPGRDFEKYSTLKGNKE-- 219 (430)
Q Consensus 150 i~vwd~~--~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~~~-- 219 (430)
|.+||+. +++.+..+.... ....++|+ |+|++++++ .++.|.++|..+... ...+........
T Consensus 220 V~viD~~~~t~~~v~~i~~G~------~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~-~~~i~~~~~~~~~~ 292 (567)
T 1qks_A 220 VNMIDLWMKEPTTVAEIKIGS------EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEP-KKIQSTRGMTYDEQ 292 (567)
T ss_dssp EEEEETTSSSCCEEEEEECCS------EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCE-EEEEECCEECTTTC
T ss_pred EEEEECCCCCCcEeEEEecCC------CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcE-EEEEeccccccccc
Confidence 9999995 777777666533 45689999 699988854 679999999766321 111111000000
Q ss_pred -CC-CcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceee--EEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeC
Q 014125 220 -GQ-AGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELL--YVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDL 295 (430)
Q Consensus 220 -~~-~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~ 295 (430)
.| ...+..+..++++..+++....+|.|.++|..+.+.. ..+. .......+.|+|+|+++++++..++.|.++|+
T Consensus 293 ~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~ 371 (567)
T 1qks_A 293 EYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS-AERFLHDGGLDGSHRYFITAANARNKLVVIDT 371 (567)
T ss_dssp CEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE-CCSSEEEEEECTTSCEEEEEEGGGTEEEEEET
T ss_pred cccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeee-ccccccCceECCCCCEEEEEeCCCCeEEEEEC
Confidence 11 1257888889877777777788899999998765432 2222 23456788999999999988867899999999
Q ss_pred CCCceEEEEee-cccCCccceEEEEEcCCCC-EEEEEc-cCCcEEEEEcCC-------CCeecccccccCCeeEEEEcCC
Q 014125 296 RKAVQVVYKLY-RSSEHTNQRILFDIEPSGR-HLGTGG-QDGLVHIYDLQT-------GKWISGFQAAADTVNGFSFHPF 365 (430)
Q Consensus 296 ~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~-~l~~~~-~dg~i~vwd~~~-------~~~~~~~~~~~~~v~~~~~~~~ 365 (430)
.+.+....... ....|.+.-..+ ++|++. ..+++. .++.|.++|..+ .+.++.+......-..+..+|+
T Consensus 372 ~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~ 450 (567)
T 1qks_A 372 KEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPN 450 (567)
T ss_dssp TTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTT
T ss_pred CCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCC
Confidence 98753322221 122343222223 588754 444543 468999999988 6677777655444455788999
Q ss_pred CcEEEEeeC-------CceeeecCCCcc
Q 014125 366 LPMAASSSG-------HRRFPVDDFEDL 386 (430)
Q Consensus 366 ~~~l~s~~~-------d~~~~vw~~~~l 386 (430)
+++|..... ...|.|+|...+
T Consensus 451 ~~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 451 SQYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp CSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred CCeEEEecCCCCCcccCceEEEEECCcc
Confidence 998887653 347777766554
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.76 E-value=5.2e-16 Score=137.40 Aligned_cols=246 Identities=16% Similarity=0.124 Sum_probs=160.5
Q ss_pred ceeEEEECcCCceEEEec---------CCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccC
Q 014125 62 FLKGIKWSPDGSSFLTSS---------EDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS 132 (430)
Q Consensus 62 ~v~~~~~sp~~~~l~s~~---------~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 132 (430)
.+..+++ ||++++... .++.|.+|++.+++. ..+ ..+..++|
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~-------------------~~l---~~~~~~~~----- 66 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNAR-------------------RFI---ENATMPRI----- 66 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCE-------------------EEE---ESCEEEEE-----
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCce-------------------EEc---ccCCCeEE-----
Confidence 3667777 888887642 256799999876531 011 35667788
Q ss_pred ccCCCCceEEEEeCC---C--cEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-EcC-------------
Q 014125 133 ASDPTSCVFASTTRD---H--PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYN------------- 193 (430)
Q Consensus 133 ~~~~~~~~l~~~~~d---g--~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d------------- 193 (430)
+|||+.|+.++.+ + .|.+|++.+++........ .+..+.|+|+++.|+. +.+
T Consensus 67 --SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-------~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~ 137 (347)
T 2gop_A 67 --SPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-------NIRSLEWNEDSRKLLIVGFKRREDEDFIFEDDV 137 (347)
T ss_dssp --CTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-------EEEEEEECTTSSEEEEEEECCCC---------C
T ss_pred --CCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-------CccceeECCCCCEEEEEEccCCCcCCcEEEccc
Confidence 8899999887654 2 4888888887665443321 1778999999998884 322
Q ss_pred --------------CeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCC-------eEEEEEc
Q 014125 194 --------------KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ-------TSAIYRE 252 (430)
Q Consensus 194 --------------~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-------~v~~~d~ 252 (430)
..|.+||+..+.. .. .+ .. . .+..+.|+|++ +++++..++ ...+|.+
T Consensus 138 ~~~~~g~~~~~~~~~~l~~~d~~~~~~-~~---~l----~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~ 205 (347)
T 2gop_A 138 PAWFDDLGFFDGEKTTFWIFDTESEEV-IE---EF----EK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIW 205 (347)
T ss_dssp CCC---------CEEEEEEEETTTTEE-EE---EE----EE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEE
T ss_pred ceeecCcccccCccceEEEEECCCCeE-Ee---ee----cC-C-CcccccCCCCe--EEEEEecccccccccccccEEEe
Confidence 5688889865321 01 11 11 1 46788999955 777665432 3344443
Q ss_pred CCceeeEEeeccccCeEEEEEccCCCEEEEEecCC--------CeEEEEeCCCCceEEEEeecccCCccceEE-EEEcCC
Q 014125 253 DNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKD--------PYILCWDLRKAVQVVYKLYRSSEHTNQRIL-FDIEPS 323 (430)
Q Consensus 253 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d--------~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~ 323 (430)
.+++.. .+..+ ..+..+ +|+|+.|+.++ .+ ..|.+|| ++. .. .+. ..+...+.. +.|+ +
T Consensus 206 d~~~~~-~l~~~-~~~~~~--spdg~~l~~~~-~~~~~~~~~~~~l~~~d--~~~-~~-~l~--~~~~~~~~~~~~~s-d 273 (347)
T 2gop_A 206 EDGKEE-KMFEK-VSFYAV--DSDGERILLYG-KPEKKYMSEHNKLYIYD--GKE-VM-GIL--DEVDRGVGQAKIKD-G 273 (347)
T ss_dssp ETTEEE-EEEEE-ESEEEE--EECSSCEEEEE-CCSSSCCCSSCEEEEEC--SSC-EE-ESS--TTCCSEEEEEEEET-T
T ss_pred CCCceE-EeccC-cceeeE--CCCCCEEEEEE-ccccCCccccceEEEEC--CCc-eE-ecc--ccCCcccCCccEEc-C
Confidence 345443 33334 555544 99999888777 33 4688888 332 21 221 344566775 8999 8
Q ss_pred CCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeC
Q 014125 324 GRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSG 374 (430)
Q Consensus 324 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 374 (430)
+ ++++++.++.++|| +.+++... +..+...|.+++|+| .++++++.
T Consensus 274 g-~~~~~~~~~~~~l~-~~~g~~~~-~~~~~~~v~~~~~s~--~~~~~~~~ 319 (347)
T 2gop_A 274 K-VYFTLFEEGSVNLY-IWDGEIKP-IAKGRHWIMGFDVDE--IVVYLKET 319 (347)
T ss_dssp E-EEEEEEETTEEEEE-EESSSEEE-EECSSSEEEEEEESS--SEEEEEEC
T ss_pred c-EEEEEecCCcEEEE-EcCCceEE-EecCCCeEEeeeeeC--cEEEEEcC
Confidence 8 99999999999999 88666543 334567899999999 66666654
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.76 E-value=7.7e-17 Score=155.57 Aligned_cols=258 Identities=10% Similarity=0.015 Sum_probs=158.7
Q ss_pred eecccCCCcee---------EEEEC--cCCce-EEEecC-CCeEEEEeCC--C-CCCcccccccccccccCcccceeeec
Q 014125 54 RTSSIPNNFLK---------GIKWS--PDGSS-FLTSSE-DKTLRIFSLP--E-NGISYDVNACSLAKDQDSYEASLVVT 117 (430)
Q Consensus 54 ~~~~~h~~~v~---------~~~~s--p~~~~-l~s~~~-dg~v~iw~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (430)
+.+..|...+. ...|+ |||+. |+.++. +..|.+|++. + +.. ..+... ....
T Consensus 61 ~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~-~~l~~~------------~~~~ 127 (662)
T 3azo_A 61 ESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVP-RPLTPV------------SAVG 127 (662)
T ss_dssp EESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCC-EECSCC------------CCST
T ss_pred ceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCC-EeccCC------------ccCC
Confidence 34556665665 66665 99998 776654 5667777665 2 211 000000 0000
Q ss_pred CCCeeeeeeeccccCccCCCCceEEEEeCC----------CcEEEEeccC------CceeeeeecccccccccceEEEEE
Q 014125 118 EGESVYDFCWFPHMSASDPTSCVFASTTRD----------HPIHLWDATT------GLLRCTYRAYDAVDEITAAFSVAF 181 (430)
Q Consensus 118 ~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d----------g~i~vwd~~~------~~~~~~~~~~~~~~~~~~v~~~~~ 181 (430)
+...+..++| +|||+.|++++.+ ..|++||+.+ ++......... ..+..++|
T Consensus 128 ~~~~~~~~~~-------spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~~ 195 (662)
T 3azo_A 128 GGLRWADPVL-------LPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAH-----RFVTGPRL 195 (662)
T ss_dssp TCEEEEEEEE-------ETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCS-----SEECCCEE
T ss_pred CCccccCcEE-------CCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCC-----CcccCceE
Confidence 3457788899 7799999998877 5899999988 55432220222 26678899
Q ss_pred CCCCcEEE-EEcC--------CeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCC--eEEEE
Q 014125 182 NPTGTKIF-AGYN--------KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ--TSAIY 250 (430)
Q Consensus 182 ~~~~~~l~-~~~d--------~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~v~~~ 250 (430)
+|||++|+ ++.+ ..|++||+...+.. . .......++...+..+.|+|++. +++++..++ .|.+|
T Consensus 196 SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~-~---~~~~l~~~~~~~~~~~~~spdg~-l~~~~~~~~~~~l~~~ 270 (662)
T 3azo_A 196 SPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRF-A---DTRTLLGGPEEAIAQAEWAPDGS-LIVATDRTGWWNLHRV 270 (662)
T ss_dssp CTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCE-E---EEEEEEEETTBCEEEEEECTTSC-EEEEECTTSSCEEEEE
T ss_pred CCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcc-c---ccEEeCCCCCceEcceEECCCCe-EEEEECCCCCeEEEEE
Confidence 99999998 4544 37999999732210 0 01111123356789999999665 888888888 67777
Q ss_pred EcCCceeeEEeeccccC--------eEEEEEccCCCEEEEEecCCCeEEEE--eCCCCceEEEEeecccCCccceEEE-E
Q 014125 251 REDNMELLYVLHGQEGG--------VTHVQFSRDGNYLYTGGRKDPYILCW--DLRKAVQVVYKLYRSSEHTNQRILF-D 319 (430)
Q Consensus 251 d~~~~~~~~~~~~~~~~--------i~~~~~~~~~~~l~~~~~~d~~i~i~--d~~~~~~~~~~~~~~~~~~~~v~~~-~ 319 (430)
|+.+++.......+... +..++|+|++++++++. . +.+++| |+.++. ...+ ..+...+..+ +
T Consensus 271 ~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~-~-~~~~l~~~d~~~~~--~~~l---~~~~~~~~~~~s 343 (662)
T 3azo_A 271 DPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHG-K-GAAVLGILDPESGE--LVDA---AGPWTEWAATLT 343 (662)
T ss_dssp CTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEB-S-SSCEEEEEETTTTE--EEEC---CSSCCEEEEEEE
T ss_pred ECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEE-c-CccEEEEEECCCCc--EEEe---cCCCCeEEEEEe
Confidence 77666654443333222 56789999999888888 7 999999 554442 2232 3445566666 4
Q ss_pred EcCCCCEEEEEccCC--cEEEEEcCCCCeec
Q 014125 320 IEPSGRHLGTGGQDG--LVHIYDLQTGKWIS 348 (430)
Q Consensus 320 ~~~~~~~l~~~~~dg--~i~vwd~~~~~~~~ 348 (430)
++++.-++++++.+. .|+++|+.+++...
T Consensus 344 ~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~ 374 (662)
T 3azo_A 344 VSGTRAVGVAASPRTAYEVVELDTVTGRART 374 (662)
T ss_dssp EETTEEEEEEEETTEEEEEEEEETTTCCEEE
T ss_pred cCCCEEEEEEcCCCCCCEEEEEECCCCceEE
Confidence 443333344444443 46667777776543
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=9.2e-16 Score=148.94 Aligned_cols=243 Identities=11% Similarity=0.006 Sum_probs=162.3
Q ss_pred eeeeeeeccccCccCCCCceEEEEeCCC-----cEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCC
Q 014125 121 SVYDFCWFPHMSASDPTSCVFASTTRDH-----PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNK 194 (430)
Q Consensus 121 ~v~~~~~~~~~~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~ 194 (430)
.+..++| ||||++|+.+..++ .|++||+.+++......... .+..++|+|||+.|+ ++.++
T Consensus 126 ~~~~~~~-------SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~------~~~~~~wspDg~~l~~~~~~~ 192 (710)
T 2xdw_A 126 ALRGYAF-------SEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERV------KFSCMAWTHDGKGMFYNAYPQ 192 (710)
T ss_dssp EEEEEEE-------CTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEE------CSCCEEECTTSSEEEEEECCC
T ss_pred EEEEEEE-------CCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCc------ccceEEEEeCCCEEEEEEECC
Confidence 5777888 88999998776543 89999999998765322111 356799999999888 44554
Q ss_pred e----------------EEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecC-----CCeEEEEEcC
Q 014125 195 S----------------VRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY-----SQTSAIYRED 253 (430)
Q Consensus 195 ~----------------i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg~v~~~d~~ 253 (430)
. |++|++.++..... +......+...+..+.|+|++. .|+.++. +..|++||+.
T Consensus 193 ~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~----~v~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~~~l~~~d~~ 267 (710)
T 2xdw_A 193 QDGKSDGTETSTNLHQKLYYHVLGTDQSEDI----LCAEFPDEPKWMGGAELSDDGR-YVLLSIREGCDPVNRLWYCDLQ 267 (710)
T ss_dssp CSSCCSSSCCCCCCCCEEEEEETTSCGGGCE----EEECCTTCTTCEEEEEECTTSC-EEEEEEECSSSSCCEEEEEEGG
T ss_pred ccccccccccccCCCCEEEEEECCCCcccce----EEeccCCCCeEEEEEEEcCCCC-EEEEEEEccCCCccEEEEEECc
Confidence 4 99999976421111 1111123445678999999555 5554443 5689999998
Q ss_pred C------ce-eeEEeeccccCeEEEEEccCCCEEEEEecCC---CeEEEEeCCCCce-EEEEeecccCCccceEEEEEcC
Q 014125 254 N------ME-LLYVLHGQEGGVTHVQFSRDGNYLYTGGRKD---PYILCWDLRKAVQ-VVYKLYRSSEHTNQRILFDIEP 322 (430)
Q Consensus 254 ~------~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d---~~i~i~d~~~~~~-~~~~~~~~~~~~~~v~~~~~~~ 322 (430)
+ +. ....+..+...+.. .|+|+|+.|+..+..+ +.|.+||+.++.. ....+.. ......+..++|++
T Consensus 268 ~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~-~~~~~~~~~~~~~~ 345 (710)
T 2xdw_A 268 QESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVP-EHEKDVLEWVACVR 345 (710)
T ss_dssp GSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEEC-CCSSCEEEEEEEET
T ss_pred ccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccC-CCCCCeEEEEEEEc
Confidence 6 43 35555556655554 5889999888776333 3699999987631 1112211 11123677899998
Q ss_pred CCCEEEEEccCCc--EEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEe-eC---CceeeecCC
Q 014125 323 SGRHLGTGGQDGL--VHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASS-SG---HRRFPVDDF 383 (430)
Q Consensus 323 ~~~~l~~~~~dg~--i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~---d~~~~vw~~ 383 (430)
++.++++...|+. |++|++.+++.+..+..+.+.+..+.++|++..++.. ++ .+.+.+||.
T Consensus 346 ~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~ 412 (710)
T 2xdw_A 346 SNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDL 412 (710)
T ss_dssp TTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEET
T ss_pred CCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEEC
Confidence 8888888888884 6677877788777787777789999999998755533 22 245555543
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.7e-15 Score=128.71 Aligned_cols=252 Identities=13% Similarity=0.041 Sum_probs=178.2
Q ss_pred CCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccC
Q 014125 137 TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKG 216 (430)
Q Consensus 137 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~ 216 (430)
.+++|++++.++.|.+||.++|+.+..+..+.. ..+.++.++|+|++++ +.++.|..||. ++...+. ..
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~----~~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~~W~----~~- 72 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKG----WECNSVAATKAGEILF-SYSKGAKMITR-DGRELWN----IA- 72 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTT----CCCCEEEECTTSCEEE-ECBSEEEEECT-TSCEEEE----EE-
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCcc----CCCcCeEECCCCCEEE-eCCCCEEEECC-CCCEEEE----Ec-
Confidence 467899999999999999999999998886541 1567899999999888 56788999998 4322111 11
Q ss_pred CCCCCCcceEEEEEcCCCCceEEEecC-CCeEEEEEcCCceeeEEeec------cccCeEEEEEccCCCEEEEEecCCCe
Q 014125 217 NKEGQAGIMSAIAFSPTHTGMLAIGSY-SQTSAIYREDNMELLYVLHG------QEGGVTHVQFSRDGNYLYTGGRKDPY 289 (430)
Q Consensus 217 ~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~v~~~d~~~~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~~d~~ 289 (430)
.+....+.++.+.| +++++++.+. ++.|..+|. +++.+..+.. +......+++.++|+++++.. .++.
T Consensus 73 --~~~~~~~~~~~~~~-dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~-~~~~ 147 (276)
T 3no2_A 73 --APAGCEMQTARILP-DGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLF-ATSE 147 (276)
T ss_dssp --CCTTCEEEEEEECT-TSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEET-TTTE
T ss_pred --CCCCccccccEECC-CCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEec-CCCE
Confidence 11223578889999 5667777766 788888886 6776665541 223455678899999998887 8999
Q ss_pred EEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccccccc------CCeeEEEEc
Q 014125 290 ILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAA------DTVNGFSFH 363 (430)
Q Consensus 290 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~------~~v~~~~~~ 363 (430)
|.+||.. ++... .... ...+..+...++|+++++++.+++|..+|..+|+.+..+..+. ..+..++..
T Consensus 148 v~~~d~~-G~~~w-~~~~----~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~ 221 (276)
T 3no2_A 148 VREIAPN-GQLLN-SVKL----SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPL 221 (276)
T ss_dssp EEEECTT-SCEEE-EEEC----SSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEEC
T ss_pred EEEECCC-CCEEE-EEEC----CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEc
Confidence 9999998 64443 2221 1345567788999999999888899999999999988886442 127888999
Q ss_pred CCCcEEEEeeCCceee---ecCCCccccccCCCcEEEEeecccccccccCCC
Q 014125 364 PFLPMAASSSGHRRFP---VDDFEDLHLSGDENCVSVWSFLYASMMENADGI 412 (430)
Q Consensus 364 ~~~~~l~s~~~d~~~~---vw~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~ 412 (430)
++|.++++..... .. --+...++-...+|.+ +|.+........+.++
T Consensus 222 ~~G~i~v~~~~g~-~~~~~~~~~~~~~~~~~~g~~-~W~~~~~~~~~~~~~~ 271 (276)
T 3no2_A 222 QNGGLYICNWQGH-DREAGKGKHPQLVEIDSEGKV-VWQLNDKVKFGMISTI 271 (276)
T ss_dssp TTSCEEEEEECTT-CTTGGGSCCCSEEEECTTSBE-EEEECCTTTSCCCCEE
T ss_pred CCCCEEEEeccCc-cccccccCCceEEEECCCCCE-EEEecCcccccceeee
Confidence 9999888874210 00 0001112222346766 9998887777666653
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.76 E-value=8.1e-17 Score=144.93 Aligned_cols=221 Identities=11% Similarity=-0.019 Sum_probs=141.0
Q ss_pred cCCCCceEEEEeC-CCc--EEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCccc
Q 014125 134 SDPTSCVFASTTR-DHP--IHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFE 209 (430)
Q Consensus 134 ~~~~~~~l~~~~~-dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~ 209 (430)
++|||+.|+.++. +|. |.+||+.+++.......+.. .+..+.|+|+++.|+ ++.++.|++||+.++....
T Consensus 43 ~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~-----~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~- 116 (388)
T 3pe7_A 43 FTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGD-----NTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENV- 116 (388)
T ss_dssp BCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCB-----CSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEE-
T ss_pred CCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCC-----CccceEEcCCCCEEEEEeCCCeEEEEECCCCccee-
Confidence 3889999998887 674 88889988877665544332 344678999999998 4577899999998743211
Q ss_pred ccccccCCCCCCCcceEEE--EEcCCCCceEEE----------------------ecCCCeEEEEEcCCceeeEEeeccc
Q 014125 210 KYSTLKGNKEGQAGIMSAI--AFSPTHTGMLAI----------------------GSYSQTSAIYREDNMELLYVLHGQE 265 (430)
Q Consensus 210 ~~~~~~~~~~~~~~~v~~~--~~~~~~~~~l~~----------------------~~~dg~v~~~d~~~~~~~~~~~~~~ 265 (430)
. ...+...+... .++| ++.+++. ...+..|.+||+.+++.... ..+.
T Consensus 117 ~-------~~~~~~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l-~~~~ 187 (388)
T 3pe7_A 117 V-------YQVPAEWVGYGTWVANS-DCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVI-LQEN 187 (388)
T ss_dssp E-------EECCTTEEEEEEEEECT-TSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEE-EEES
T ss_pred e-------eechhhcccccceeECC-CCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEe-ecCC
Confidence 0 11222233333 3477 4445543 22457899999998865544 3466
Q ss_pred cCeEEEEEcc-CCCEEEEEecC-----CCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEcc-CC----
Q 014125 266 GGVTHVQFSR-DGNYLYTGGRK-----DPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQ-DG---- 334 (430)
Q Consensus 266 ~~i~~~~~~~-~~~~l~~~~~~-----d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg---- 334 (430)
..+..++|+| +|+.|+..... ...|.++|+...... .+.. ......+..++|+|+|+.|+..+. ++
T Consensus 188 ~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~--~l~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~ 264 (388)
T 3pe7_A 188 QWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR--KVKT-HAEGESCTHEFWVPDGSALVYVSYLKGSPDR 264 (388)
T ss_dssp SCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE--ESCC-CCTTEEEEEEEECTTSSCEEEEEEETTCCCE
T ss_pred ccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE--Eeee-CCCCcccccceECCCCCEEEEEecCCCCCcc
Confidence 7789999999 99988877722 237888887665322 2211 111135778899999997765443 22
Q ss_pred cEEEEEcCCCCeec--ccccccC---CeeEEEEcCCCcEEEEe
Q 014125 335 LVHIYDLQTGKWIS--GFQAAAD---TVNGFSFHPFLPMAASS 372 (430)
Q Consensus 335 ~i~vwd~~~~~~~~--~~~~~~~---~v~~~~~~~~~~~l~s~ 372 (430)
.|++||+.+++... .+.++.. ....+.|+|+|+.|+..
T Consensus 265 ~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~ 307 (388)
T 3pe7_A 265 FIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVD 307 (388)
T ss_dssp EEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC---
T ss_pred eEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeE
Confidence 39999999987432 2332111 12234789999877754
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-15 Score=131.87 Aligned_cols=229 Identities=11% Similarity=0.038 Sum_probs=158.2
Q ss_pred CCeeeeeeeccccCccCCCCc-eEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeE
Q 014125 119 GESVYDFCWFPHMSASDPTSC-VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSV 196 (430)
Q Consensus 119 ~~~v~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i 196 (430)
.....+++| +|+++ +++++..++.|..|+..++ ...+..... .+.+++++|+++++++. .++.|
T Consensus 27 ~~~~eg~~~-------d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~-----~~~~l~~~~dg~l~v~~~~~~~i 92 (296)
T 3e5z_A 27 FTWTEGPVY-------VPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSH-----HQNGHCLNKQGHLIACSHGLRRL 92 (296)
T ss_dssp CSSEEEEEE-------EGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCS-----SEEEEEECTTCCEEEEETTTTEE
T ss_pred CccccCCeE-------eCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCC-----CcceeeECCCCcEEEEecCCCeE
Confidence 345667788 66787 7888888999999999887 444544332 68899999999988876 46899
Q ss_pred EEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEE----ec-------------CCCeEEEEEcCCceeeE
Q 014125 197 RVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAI----GS-------------YSQTSAIYREDNMELLY 259 (430)
Q Consensus 197 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~----~~-------------~dg~v~~~d~~~~~~~~ 259 (430)
.+||..++.. ...... ........+..++++| +++++++ |+ ..+.|..++.. ++. .
T Consensus 93 ~~~d~~~g~~--~~~~~~--~~~~~~~~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~ 165 (296)
T 3e5z_A 93 ERQREPGGEW--ESIADS--FEGKKLNSPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-S 165 (296)
T ss_dssp EEECSTTCCE--EEEECE--ETTEECCCCCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-E
T ss_pred EEEcCCCCcE--EEEeec--cCCCCCCCCCCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-E
Confidence 9999865321 111000 0011123467899999 5567776 33 13466666665 443 3
Q ss_pred EeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCC-CCce-EEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEE
Q 014125 260 VLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR-KAVQ-VVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVH 337 (430)
Q Consensus 260 ~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~-~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 337 (430)
.+..+......++|+|+++.+++.. .++.|.+|++. ++.. ...... ..+...+..++++++|+++++. ++.|.
T Consensus 166 ~~~~~~~~~~gi~~s~dg~~lv~~~-~~~~i~~~~~~~~g~~~~~~~~~--~~~~~~p~~i~~d~~G~l~v~~--~~~v~ 240 (296)
T 3e5z_A 166 APIRDRVKPNGLAFLPSGNLLVSDT-GDNATHRYCLNARGETEYQGVHF--TVEPGKTDGLRVDAGGLIWASA--GDGVH 240 (296)
T ss_dssp EEECCCSSEEEEEECTTSCEEEEET-TTTEEEEEEECSSSCEEEEEEEE--CCSSSCCCSEEEBTTSCEEEEE--TTEEE
T ss_pred EeecCCCCCccEEECCCCCEEEEeC-CCCeEEEEEECCCCcCcCCCeEe--eCCCCCCCeEEECCCCCEEEEc--CCeEE
Confidence 3444556778999999999985544 78999999997 3322 111222 2244556779999999876666 78899
Q ss_pred EEEcCCCCeecccccccCCeeEEEE-cCCCcEEEEeeCC
Q 014125 338 IYDLQTGKWISGFQAAADTVNGFSF-HPFLPMAASSSGH 375 (430)
Q Consensus 338 vwd~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~s~~~d 375 (430)
+||.. ++.+..+..+.. +.+++| .|+++.|..++.+
T Consensus 241 ~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~ 277 (296)
T 3e5z_A 241 VLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVST 277 (296)
T ss_dssp EECTT-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETT
T ss_pred EECCC-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCC
Confidence 99987 778877877777 999999 5898888888754
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1e-15 Score=130.40 Aligned_cols=235 Identities=10% Similarity=-0.004 Sum_probs=156.2
Q ss_pred eeeeeeeccccCccCCCCceEE-EEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEE
Q 014125 121 SVYDFCWFPHMSASDPTSCVFA-STTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVF 199 (430)
Q Consensus 121 ~v~~~~~~~~~~~~~~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~ 199 (430)
...++++ ++++++++ +...++.|.+|+..++........ ....+.++++++++.++++..++.|.+|
T Consensus 25 ~p~~i~~-------~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~-----~~~~p~~i~~~~~g~l~v~~~~~~i~~~ 92 (270)
T 1rwi_B 25 SPSGVAV-------DSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFN-----GLYQPQGLAVDGAGTVYVTDFNNRVVTL 92 (270)
T ss_dssp CEEEEEE-------CTTCCEEEEECSSSCEEEEECC-----EECCCC-----SCCSCCCEEECTTCCEEEEETTTEEEEE
T ss_pred CccceEE-------CCCCCEEEEccCCCCcEEEecCCCcccceEeeC-----CcCCcceeEECCCCCEEEEcCCCEEEEE
Confidence 4455555 77888777 547788999999766543221111 1125678999999997776668899999
Q ss_pred EcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCE
Q 014125 200 DVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNY 279 (430)
Q Consensus 200 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 279 (430)
|...... . .. .......+..++++| +++++++...++.|.+|+..+.............+.+++++++|+.
T Consensus 93 d~~~~~~--~---~~---~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l 163 (270)
T 1rwi_B 93 AAGSNNQ--T---VL---PFDGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNV 163 (270)
T ss_dssp CTTCSCC--E---EC---CCCSCSSEEEEEECT-TCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCE
T ss_pred eCCCceE--e---ee---ecCCcCCCcceEECC-CCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCE
Confidence 9765321 1 11 012224588999999 5567777777899999986654433322223346789999999985
Q ss_pred EEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeE
Q 014125 280 LYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNG 359 (430)
Q Consensus 280 l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~ 359 (430)
+++.. .++.|.+||........ . .......+..++++++|.++++...++.|.+|+............+...+.+
T Consensus 164 ~v~~~-~~~~i~~~~~~~~~~~~-~---~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~ 238 (270)
T 1rwi_B 164 YVTDT-DNNRVVKLEAESNNQVV-L---PFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLA 238 (270)
T ss_dssp EEEEG-GGTEEEEECTTTCCEEE-C---CCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEE
T ss_pred EEEEC-CCCEEEEEecCCCceEe-e---cccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCcee
Confidence 55554 68899999988764322 1 1223366889999999988887777889999998765443322233457899
Q ss_pred EEEcCCCcEEEEeeCCceeeec
Q 014125 360 FSFHPFLPMAASSSGHRRFPVD 381 (430)
Q Consensus 360 ~~~~~~~~~l~s~~~d~~~~vw 381 (430)
++++|+|+++++...++.|.++
T Consensus 239 i~~~~~g~l~v~~~~~~~v~~~ 260 (270)
T 1rwi_B 239 VAVDSDRTVYVADRGNDRVVKL 260 (270)
T ss_dssp EEECTTCCEEEEEGGGTEEEEE
T ss_pred EEECCCCCEEEEECCCCEEEEE
Confidence 9999999987777654444444
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-14 Score=134.89 Aligned_cols=301 Identities=8% Similarity=0.014 Sum_probs=195.9
Q ss_pred ceeEEEECcCCceEEEecCCCeEEEEeCC--CCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccC----
Q 014125 62 FLKGIKWSPDGSSFLTSSEDKTLRIFSLP--ENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASD---- 135 (430)
Q Consensus 62 ~v~~~~~sp~~~~l~s~~~dg~v~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---- 135 (430)
.+..+.|||||++|++++.|+.|.+||+. +.+.. ..+..+.....++| +
T Consensus 198 ~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v------------------~~i~~G~~P~~ia~-------s~~~~ 252 (567)
T 1qks_A 198 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTV------------------AEIKIGSEARSIET-------SKMEG 252 (567)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEE------------------EEEECCSEEEEEEE-------CCSTT
T ss_pred CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEe------------------EEEecCCCCceeEE-------ccccC
Confidence 46689999999999999999999999995 43221 11222334566777 6
Q ss_pred CCCceEEEEeC-CCcEEEEeccCCceeeeeeccccc-c----c-ccceEEEEECCCCcEEEEE--cCCeEEEEEcCCCCC
Q 014125 136 PTSCVFASTTR-DHPIHLWDATTGLLRCTYRAYDAV-D----E-ITAAFSVAFNPTGTKIFAG--YNKSVRVFDVHRPGR 206 (430)
Q Consensus 136 ~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~-~----~-~~~v~~~~~~~~~~~l~~~--~d~~i~v~d~~~~~~ 206 (430)
|+|++++++.. +++|.++|..+.+.+..+...... . + ...+..+..++++..++.. .+|.|.++|......
T Consensus 253 pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~ 332 (567)
T 1qks_A 253 WEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN 332 (567)
T ss_dssp CTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSE
T ss_pred CCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCcc
Confidence 58988887765 589999999999888876643210 0 1 1156788889887766643 679999999865321
Q ss_pred cccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeec-----cccCeEEEEEccCCCEEE
Q 014125 207 DFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG-----QEGGVTHVQFSRDGNYLY 281 (430)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~l~ 281 (430)
. . ...+ ........+.|+|++..++++...++.|.++|+.+++.+..+.. |.+.-..+ ++|++..++
T Consensus 333 ~-~-v~~i-----~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~ 404 (567)
T 1qks_A 333 L-K-TTEI-----SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVW 404 (567)
T ss_dssp E-E-EEEE-----ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEE
T ss_pred c-e-eeee-----eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEE
Confidence 0 0 0111 11234668899996666666677789999999999987766653 32211122 578755555
Q ss_pred EEe-cCCCeEEEEeCCCCc------eEEEEeecccCCccceEEEEEcCCCCEEEEEcc-------CCcEEEEEcCCC---
Q 014125 282 TGG-RKDPYILCWDLRKAV------QVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQ-------DGLVHIYDLQTG--- 344 (430)
Q Consensus 282 ~~~-~~d~~i~i~d~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------dg~i~vwd~~~~--- 344 (430)
+++ ..++.|.++|..+.. +....+.. ....-..+..+|++++|.+... .++|.|+|+.+.
T Consensus 405 ~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~---~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~ 481 (567)
T 1qks_A 405 ATSHMGDDSVALIGTDPEGHPDNAWKILDSFPA---LGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGD 481 (567)
T ss_dssp EEEBSSSSEEEEEECCTTTCTTTBTSEEEEEEC---SCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCS
T ss_pred EeCCCCCCeEEEecCCCCCCccccCEEEEEEec---CCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCccccc
Confidence 443 246899999998721 23333321 1222234678999999888663 358999999876
Q ss_pred --Ce-ecccc--------cccCCeeEEEEcCCCcEEEEeeCCceeeecCCCccccccCCCcEEEEeecccccccccC
Q 014125 345 --KW-ISGFQ--------AAADTVNGFSFHPFLPMAASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYASMMENAD 410 (430)
Q Consensus 345 --~~-~~~~~--------~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~~~~~~~ 410 (430)
.. +..+. .....+..+.|+|+|..+..+.+.+ . ..++.|.++|..+.+++..+.
T Consensus 482 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~-------~-----~~~~~i~v~D~~t~~~~~~i~ 546 (567)
T 1qks_A 482 GSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNG-------K-----DQESALVVVDDKTLELKHVIK 546 (567)
T ss_dssp SSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECC-------T-----TSCCEEEEEETTTTEEEEEEC
T ss_pred ccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecC-------C-----CCCCcEEEEECCCceEEEEeC
Confidence 21 12221 1234689999999999776653210 0 035677777777776665555
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.73 E-value=7.7e-15 Score=124.90 Aligned_cols=241 Identities=8% Similarity=0.018 Sum_probs=161.7
Q ss_pred ceeEEEECcCCceEE-EecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCce
Q 014125 62 FLKGIKWSPDGSSFL-TSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV 140 (430)
Q Consensus 62 ~v~~~~~sp~~~~l~-s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (430)
...+++++|+|++++ +.+.++.|.+|+..+..... ........+.++++ ++++++
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~-----------------~~~~~~~~p~~i~~-------~~~g~l 80 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV-----------------LPFNGLYQPQGLAV-------DGAGTV 80 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EE-----------------CCCCSCCSCCCEEE-------CTTCCE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccce-----------------EeeCCcCCcceeEE-------CCCCCE
Confidence 578899999999777 55778899999876432110 00111134556666 778886
Q ss_pred EEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccccccccCCCC
Q 014125 141 FASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKE 219 (430)
Q Consensus 141 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~ 219 (430)
+++.. ++.|.+||....... .+... ....+..+++++++.++++. .++.|.+|+....... . . ..
T Consensus 81 ~v~~~-~~~i~~~d~~~~~~~-~~~~~----~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~---~--~---~~ 146 (270)
T 1rwi_B 81 YVTDF-NNRVVTLAAGSNNQT-VLPFD----GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQT---V--L---PF 146 (270)
T ss_dssp EEEET-TTEEEEECTTCSCCE-ECCCC----SCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCE---E--C---CC
T ss_pred EEEcC-CCEEEEEeCCCceEe-eeecC----CcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeE---e--e---cc
Confidence 66655 889999998765432 22211 11267899999999877765 6788999965432110 0 0 11
Q ss_pred CCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCc
Q 014125 220 GQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAV 299 (430)
Q Consensus 220 ~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~ 299 (430)
.....+..++++| +++++++...++.|.+||............+...+.+++++++|..+++.. .++.|.+||.....
T Consensus 147 ~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~-~~~~v~~~~~~~~~ 224 (270)
T 1rwi_B 147 TGLNDPDGVAVDN-SGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEH-NTNQVVKLLAGSTT 224 (270)
T ss_dssp CSCCSCCCEEECT-TCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEET-TTSCEEEECTTCSC
T ss_pred ccCCCceeEEEeC-CCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEEC-CCCcEEEEcCCCCc
Confidence 2223467899999 456777777789999999887655433333336789999999996555554 78899999987653
Q ss_pred eEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCe
Q 014125 300 QVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKW 346 (430)
Q Consensus 300 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 346 (430)
... . ...+...+..++++|+|+++++...++.|+++++...+.
T Consensus 225 ~~~--~--~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 225 STV--L--PFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp CEE--C--CCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred cee--e--ccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence 221 1 122335688999999999888888999999999876543
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.2e-15 Score=129.54 Aligned_cols=256 Identities=7% Similarity=-0.008 Sum_probs=165.8
Q ss_pred CCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCc
Q 014125 80 EDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGL 159 (430)
Q Consensus 80 ~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 159 (430)
.+++|.+||..+++....+.... . ....+.....+.+ . ++.++++...++.|.+||..+++
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~---------n--~~~lg~~~~~i~~-------~-~~~lyv~~~~~~~v~viD~~t~~ 75 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRA---------N--GFKLGDVAQSMVI-------R-DGIGWIVVNNSHVIFAIDINTFK 75 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHH---------H--SSCCBSCEEEEEE-------E-TTEEEEEEGGGTEEEEEETTTCC
T ss_pred CCceEEEEECCCCEEhhhhHhhh---------c--CcccCccceEEEE-------E-CCEEEEEEcCCCEEEEEECcccE
Confidence 48899999998875432221000 0 0011123344544 1 34556666678999999999999
Q ss_pred eeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceE
Q 014125 160 LRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGML 238 (430)
Q Consensus 160 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 238 (430)
.+..+.... .+..++++++++.+++. .++.|.+||..+.... ..+ .. ....+.......+++ . ++.++
T Consensus 76 ~~~~i~~~~------~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~-~~i-~~-g~~~~~~~~p~~i~~-~-~~~ly 144 (328)
T 3dsm_A 76 EVGRITGFT------SPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEIT-GYI-EC-PDMDMESGSTEQMVQ-Y-GKYVY 144 (328)
T ss_dssp EEEEEECCS------SEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEE-EEE-EC-TTCCTTTCBCCCEEE-E-TTEEE
T ss_pred EEEEcCCCC------CCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEE-EEE-Ec-CCccccCCCcceEEE-E-CCEEE
Confidence 888775322 67789999998655565 6899999998763211 011 00 000111113445666 3 55566
Q ss_pred EEec-CCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCC----------CeEEEEeCCCCceEEEEeec
Q 014125 239 AIGS-YSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKD----------PYILCWDLRKAVQVVYKLYR 307 (430)
Q Consensus 239 ~~~~-~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d----------~~i~i~d~~~~~~~~~~~~~ 307 (430)
++.. .++.|.++|..+++....+.. ......++++|+|++++++. .+ +.|.++|..+.. ....+..
T Consensus 145 v~~~~~~~~v~viD~~t~~~~~~i~~-g~~p~~i~~~~dG~l~v~~~-~~~~~~~~~~~~~~v~~id~~t~~-v~~~~~~ 221 (328)
T 3dsm_A 145 VNCWSYQNRILKIDTETDKVVDELTI-GIQPTSLVMDKYNKMWTITD-GGYEGSPYGYEAPSLYRIDAETFT-VEKQFKF 221 (328)
T ss_dssp EEECTTCCEEEEEETTTTEEEEEEEC-SSCBCCCEECTTSEEEEEBC-CBCTTCSSCBCCCEEEEEETTTTE-EEEEEEC
T ss_pred EEcCCCCCEEEEEECCCCeEEEEEEc-CCCccceEEcCCCCEEEEEC-CCccCCccccCCceEEEEECCCCe-EEEEEec
Confidence 6654 489999999999988877764 33457899999998666554 44 789999998774 3222211
Q ss_pred ccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecc--cccccCCeeEEEEcC-CCcEEEEe
Q 014125 308 SSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISG--FQAAADTVNGFSFHP-FLPMAASS 372 (430)
Q Consensus 308 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~-~~~~l~s~ 372 (430)
........++++|++++|+++.. .|.+||+.+++.... +..+.....+++++| ++.+.++.
T Consensus 222 --~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~ 285 (328)
T 3dsm_A 222 --KLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVAD 285 (328)
T ss_dssp --CTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEE
T ss_pred --CCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEc
Confidence 11236789999999999888765 899999998876432 222245788999999 45555554
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.72 E-value=6.7e-15 Score=127.08 Aligned_cols=244 Identities=10% Similarity=0.095 Sum_probs=162.3
Q ss_pred ecccCCCceeEEEECcCCc-eEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCc
Q 014125 55 TSSIPNNFLKGIKWSPDGS-SFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (430)
Q Consensus 55 ~~~~h~~~v~~~~~sp~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (430)
.+..+.....+++|+|+|+ +++++..++.|.+|+..++ . . ....+...+.++++
T Consensus 22 ~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~-~-----------------~~~~~~~~~~~l~~------ 76 (296)
T 3e5z_A 22 RLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L-S-----------------PEMHPSHHQNGHCL------ 76 (296)
T ss_dssp EEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E-E-----------------EEESSCSSEEEEEE------
T ss_pred EEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e-E-----------------EEECCCCCcceeeE------
Confidence 3445566688999999998 7888888999999998754 1 1 11123356778888
Q ss_pred cCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE----c--------------CCe
Q 014125 134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG----Y--------------NKS 195 (430)
Q Consensus 134 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----~--------------d~~ 195 (430)
+++++++++...++.|.+||..+++.......... .....+..++++|+|+++++. . .+.
T Consensus 77 -~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~-~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~ 154 (296)
T 3e5z_A 77 -NKQGHLIACSHGLRRLERQREPGGEWESIADSFEG-KKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRW 154 (296)
T ss_dssp -CTTCCEEEEETTTTEEEEECSTTCCEEEEECEETT-EECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCE
T ss_pred -CCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCC-CCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcE
Confidence 77898888877778999999988876544332211 111246689999999988852 1 234
Q ss_pred EEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcC-Ccee---eEEeeccccCeEEE
Q 014125 196 VRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED-NMEL---LYVLHGQEGGVTHV 271 (430)
Q Consensus 196 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~-~~~~---~~~~~~~~~~i~~~ 271 (430)
|..++.. +. ... . ..+......++|+|++ +.+++.+.++.|.+|++. +++. ...+..+...+.++
T Consensus 155 l~~~~~~--g~-~~~---~----~~~~~~~~gi~~s~dg-~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i 223 (296)
T 3e5z_A 155 VFRLAPD--GT-LSA---P----IRDRVKPNGLAFLPSG-NLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGL 223 (296)
T ss_dssp EEEECTT--SC-EEE---E----ECCCSSEEEEEECTTS-CEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSE
T ss_pred EEEECCC--CC-EEE---e----ecCCCCCccEEECCCC-CEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeE
Confidence 5555443 21 111 1 1233457889999955 455888888999999986 4443 22333345567889
Q ss_pred EEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEE-cCCCCEEEEEccCCcEEEEEcCCCCe
Q 014125 272 QFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDI-EPSGRHLGTGGQDGLVHIYDLQTGKW 346 (430)
Q Consensus 272 ~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~vwd~~~~~~ 346 (430)
+++++|+++++. ++.|.+||.... ....+ ..+.. +.+++| +|+++.|++++.++ +.-++..+.++
T Consensus 224 ~~d~~G~l~v~~---~~~v~~~~~~g~--~~~~~---~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~~ 289 (296)
T 3e5z_A 224 RVDAGGLIWASA---GDGVHVLTPDGD--ELGRV---LTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRGL 289 (296)
T ss_dssp EEBTTSCEEEEE---TTEEEEECTTSC--EEEEE---ECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCCBC
T ss_pred EECCCCCEEEEc---CCeEEEECCCCC--EEEEE---ECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEcccccc
Confidence 999999855443 788999998732 22222 22333 788999 68999888887764 55666665554
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.71 E-value=8.6e-14 Score=122.33 Aligned_cols=241 Identities=12% Similarity=0.095 Sum_probs=158.2
Q ss_pred eeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccC
Q 014125 53 FRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS 132 (430)
Q Consensus 53 ~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 132 (430)
...+..+...+.+++|+|+|++++++..++.|.+||..+++... ....+...+.+++|
T Consensus 37 ~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~-----------------~~~~~~~~~~~i~~----- 94 (333)
T 2dg1_A 37 WLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKR-----------------PFVSHKANPAAIKI----- 94 (333)
T ss_dssp EEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE-----------------EEECSSSSEEEEEE-----
T ss_pred eEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEE-----------------EeeCCCCCcceEEE-----
Confidence 34455667778999999999988888899999999987653210 11123457888888
Q ss_pred ccCCCCceEEEEeCC----CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcC-------CeEEEEEc
Q 014125 133 ASDPTSCVFASTTRD----HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYN-------KSVRVFDV 201 (430)
Q Consensus 133 ~~~~~~~~l~~~~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d-------~~i~v~d~ 201 (430)
+++++++++...+ +.|.+||..++.....+.... ....+..++++|++.++++... +.|..++.
T Consensus 95 --~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~---~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~ 169 (333)
T 2dg1_A 95 --HKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLS---TAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSP 169 (333)
T ss_dssp --CTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSS---SCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECT
T ss_pred --CCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCc---cCCcccceEECCCCCEEEEeccccccCCCceEEEEeC
Confidence 7788888877666 689999998876543332111 1236889999999988886642 44555554
Q ss_pred CCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCC-ceeeEE--------eeccccCeEEEE
Q 014125 202 HRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN-MELLYV--------LHGQEGGVTHVQ 272 (430)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~-~~~~~~--------~~~~~~~i~~~~ 272 (430)
.. ...... ......+..++|+|++..++++.+.++.|.+||..+ +..... +..+ ..+..++
T Consensus 170 ~~--~~~~~~-------~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~ 239 (333)
T 2dg1_A 170 DF--RTVTPI-------IQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCC 239 (333)
T ss_dssp TS--CCEEEE-------EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEE
T ss_pred CC--CEEEEe-------ecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceE
Confidence 32 111111 011234788999995554666667789999999864 332211 1111 3578899
Q ss_pred EccCCCEEEEEecCCCeEEEEeCCCCceEEEEeeccc---CCccceEEEEEcCCCCEEEEEccC
Q 014125 273 FSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSS---EHTNQRILFDIEPSGRHLGTGGQD 333 (430)
Q Consensus 273 ~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d 333 (430)
++++|+++++.. .++.|.+||.... . ...+.... ++...+..++|+|+++.|+.++.+
T Consensus 240 ~d~~G~l~v~~~-~~~~v~~~d~~g~-~-~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 240 IDSDDNLYVAMY-GQGRVLVFNKRGY-P-IGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp EBTTCCEEEEEE-TTTEEEEECTTSC-E-EEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred ECCCCCEEEEEc-CCCEEEEECCCCC-E-EEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 999998777766 7899999998532 2 22221111 122267889999998777666655
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=4.6e-15 Score=144.06 Aligned_cols=248 Identities=11% Similarity=-0.001 Sum_probs=161.1
Q ss_pred ccCCCceeEEEECcCCceEEEecCCC-----eEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecccc
Q 014125 57 SIPNNFLKGIKWSPDGSSFLTSSEDK-----TLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (430)
Q Consensus 57 ~~h~~~v~~~~~sp~~~~l~s~~~dg-----~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (430)
.+|...+..++|||||++||.++.++ .|++||+.+++.... ...+ ..+..++|
T Consensus 121 ~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~-----------------~~~~-~~~~~~~w---- 178 (710)
T 2xdw_A 121 DDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD-----------------VLER-VKFSCMAW---- 178 (710)
T ss_dssp TTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE-----------------EEEE-ECSCCEEE----
T ss_pred cCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc-----------------cccC-cccceEEE----
Confidence 34555788999999999999776543 899999987643210 1111 12567888
Q ss_pred CccCCCCceEEEEeCCCc----------------EEEEeccCCcee--eeeecccccccccceEEEEECCCCcEEEE-Ec
Q 014125 132 SASDPTSCVFASTTRDHP----------------IHLWDATTGLLR--CTYRAYDAVDEITAAFSVAFNPTGTKIFA-GY 192 (430)
Q Consensus 132 ~~~~~~~~~l~~~~~dg~----------------i~vwd~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~ 192 (430)
+|||+.|+.++.++. |++|++.+++.. ..+.... +...+..+.|+|+|++|+. +.
T Consensus 179 ---spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~---~~~~~~~~~~SpDg~~l~~~~~ 252 (710)
T 2xdw_A 179 ---THDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPD---EPKWMGGAELSDDGRYVLLSIR 252 (710)
T ss_dssp ---CTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTT---CTTCEEEEEECTTSCEEEEEEE
T ss_pred ---EeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCC---CCeEEEEEEEcCCCCEEEEEEE
Confidence 789999999988766 999999887632 2222211 1224678999999999883 33
Q ss_pred -----CCeEEEEEcCC------CCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCC---CeEEEEEcCCcee-
Q 014125 193 -----NKSVRVFDVHR------PGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS---QTSAIYREDNMEL- 257 (430)
Q Consensus 193 -----d~~i~v~d~~~------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~v~~~d~~~~~~- 257 (430)
+..|++||+.. +..... .+ ..+...+.. .|+|++..+++.+..+ +.|.+||+.++..
T Consensus 253 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~---~l----~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~ 324 (710)
T 2xdw_A 253 EGCDPVNRLWYCDLQQESNGITGILKWV---KL----IDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEES 324 (710)
T ss_dssp CSSSSCCEEEEEEGGGSSSSSCSSCCCE---EE----ECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGG
T ss_pred ccCCCccEEEEEECcccccccCCccceE---Ee----eCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcc
Confidence 56899999875 211111 11 122223333 4778566555555433 4799999987642
Q ss_pred -eEEeecccc--CeEEEEEccCCCEEEEEecCCCe--EEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEE-c
Q 014125 258 -LYVLHGQEG--GVTHVQFSRDGNYLYTGGRKDPY--ILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTG-G 331 (430)
Q Consensus 258 -~~~~~~~~~--~i~~~~~~~~~~~l~~~~~~d~~--i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~ 331 (430)
...+..|.. .+..++|++++.++++.. .++. |.+|++.++... ..+ ..+...+..++++|++..++.. +
T Consensus 325 ~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~-~~g~~~l~~~~~~~g~~~-~~l---~~~~~~v~~~~~s~d~~~l~~~~s 399 (710)
T 2xdw_A 325 KWKVLVPEHEKDVLEWVACVRSNFLVLCYL-HDVKNTLQLHDLATGALL-KIF---PLEVGSVVGYSGQKKDTEIFYQFT 399 (710)
T ss_dssp GCEEEECCCSSCEEEEEEEETTTEEEEEEE-ETTEEEEEEEETTTCCEE-EEE---CCCSSEEEEEECCTTCSEEEEEEE
T ss_pred cceeccCCCCCCeEEEEEEEcCCEEEEEEE-ECCEEEEEEEECCCCCEE-Eec---CCCCceEEEEecCCCCCEEEEEEe
Confidence 234444433 678899987776666666 7874 566777555422 222 2346678889999998766533 2
Q ss_pred ---cCCcEEEEEcCCCC
Q 014125 332 ---QDGLVHIYDLQTGK 345 (430)
Q Consensus 332 ---~dg~i~vwd~~~~~ 345 (430)
..+.|++||+.+++
T Consensus 400 s~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 400 SFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp CSSCCCEEEEEETTSSS
T ss_pred CCCCCCEEEEEECCCCc
Confidence 34789999998877
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.4e-13 Score=116.50 Aligned_cols=270 Identities=10% Similarity=0.059 Sum_probs=180.8
Q ss_pred CCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCC
Q 014125 59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS 138 (430)
Q Consensus 59 h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 138 (430)
....+.++++.++|+.+++...++.|.+|+.. ++... .. .......+..+++ ++++
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~---------------~~~~~~~~~~i~~-------~~~g 73 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FE---------------VPTPDAKVMCLIV-------SSLG 73 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EE---------------CSSTTCCEEEEEE-------CTTS
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EE---------------CCCCCCcceeEEE-------CCCC
Confidence 34568899999999988887788999999976 32210 00 0011245667777 6778
Q ss_pred ceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccccccccCC
Q 014125 139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGN 217 (430)
Q Consensus 139 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~ 217 (430)
.++++...++.|..+|.. ++.. .+..... ...+.++++.+++.++++. .++.|..++.. + .. ....
T Consensus 74 ~l~v~~~~~~~v~~~d~~-g~~~-~~~~~~~---~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g-~~-~~~~----- 140 (300)
T 2qc5_A 74 DIWFTENGANKIGKLSKK-GGFT-EYPLPQP---DSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-G-TI-YEYD----- 140 (300)
T ss_dssp CEEEEETTTTEEEEECTT-SCEE-EEECSST---TCCEEEEEECSTTCEEEEETTTTEEEEECTT-S-CE-EEEE-----
T ss_pred CEEEEecCCCeEEEECCC-CCeE-EecCCCC---CCCCccceECCCCCEEEEccCCCeEEEECCC-C-CE-EEcc-----
Confidence 877777778889999987 5543 2322111 1267899999999888876 47889999875 2 11 1110
Q ss_pred CCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEE-eeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCC
Q 014125 218 KEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYV-LHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR 296 (430)
Q Consensus 218 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~ 296 (430)
.......+..+++.+ +++++++...++.|..||. +++.... ...+...+..++++++|...++.. ..+.|..||.
T Consensus 141 ~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~-~~~~i~~~~~- 216 (300)
T 2qc5_A 141 LPNKGSYPAFITLGS-DNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEI-MGNKIGRITT- 216 (300)
T ss_dssp CSSTTCCEEEEEECT-TSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEET-TTTEEEEECT-
T ss_pred CCCCCCCceeEEECC-CCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEcc-CCCEEEEEcC-
Confidence 111234688999999 4557777766889999998 4544332 223345688999999997665554 6778999998
Q ss_pred CCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeec-ccccccCCeeEEEEcCCCcEEEEee
Q 014125 297 KAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWIS-GFQAAADTVNGFSFHPFLPMAASSS 373 (430)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~s~~ 373 (430)
++....... ......+..++++++|++.++...++.|..||. +++... .+......+.++++.++|.+.++..
T Consensus 217 ~g~~~~~~~---~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~ 290 (300)
T 2qc5_A 217 TGEISEYDI---PTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK 290 (300)
T ss_dssp TCCEEEEEC---SSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS
T ss_pred CCcEEEEEC---CCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc
Confidence 332222111 234566889999999997777767789999998 454332 2233345688999999988776654
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.2e-15 Score=147.77 Aligned_cols=247 Identities=13% Similarity=-0.013 Sum_probs=155.2
Q ss_pred cCCCceeEEEECcCCceEE-----EecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccC
Q 014125 58 IPNNFLKGIKWSPDGSSFL-----TSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS 132 (430)
Q Consensus 58 ~h~~~v~~~~~sp~~~~l~-----s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 132 (430)
+|...+.+++|||||++|| .|+.+..|++||+.+++..... ... ......++|
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~----------------~~~-~~~~~~~~w----- 175 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD----------------VIE-GGKYATPKW----- 175 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC----------------CBS-CCTTCCCEE-----
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc----------------ccC-cccccceEE-----
Confidence 5666799999999999999 4555678999999987542000 000 011256788
Q ss_pred ccCCCCceEEEEeCCCc-------------EEEEeccCCcee--eeeecccccccccceEEEEECCCCcEEE-EEcCC--
Q 014125 133 ASDPTSCVFASTTRDHP-------------IHLWDATTGLLR--CTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNK-- 194 (430)
Q Consensus 133 ~~~~~~~~l~~~~~dg~-------------i~vwd~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~-- 194 (430)
+|||+.|+.++.|.. |++|++.++... ..+... .+...+..+.|+|+|++|+ ++.++
T Consensus 176 --spDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~---~~~~~~~~~~~SpDG~~l~~~~~~~~~ 250 (695)
T 2bkl_A 176 --TPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERT---GDPTTFLQSDLSRDGKYLFVYILRGWS 250 (695)
T ss_dssp --CTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCC---CCTTCEEEEEECTTSCCEEEEEEETTT
T ss_pred --ecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecC---CCCEEEEEEEECCCCCEEEEEEeCCCC
Confidence 889999999988776 999999887632 222221 1222677899999999888 44444
Q ss_pred --eEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEec---CCCeEEEEEcCCcee---eEEeecc-c
Q 014125 195 --SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS---YSQTSAIYREDNMEL---LYVLHGQ-E 265 (430)
Q Consensus 195 --~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~v~~~d~~~~~~---~~~~~~~-~ 265 (430)
.|++++... ..... + ..+...+....+ +++. +++.+. .++.|.+||+.+++. ...+..+ .
T Consensus 251 ~~~l~~~~~~~--~~~~~---l----~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~ 319 (695)
T 2bkl_A 251 ENDVYWKRPGE--KDFRL---L----VKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSS 319 (695)
T ss_dssp EEEEEEECTTC--SSCEE---E----EECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSS
T ss_pred ceEEEEEcCCC--CceEE---e----ecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCC
Confidence 555554322 11211 1 112223444455 4355 666554 358899999987653 3333323 3
Q ss_pred cCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEE----ccCCcEEEEEc
Q 014125 266 GGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTG----GQDGLVHIYDL 341 (430)
Q Consensus 266 ~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----~~dg~i~vwd~ 341 (430)
..+..++|+ ++..+++.. .|+..++|.+.........+. ......+..++++|++..++.. ...+.|++||+
T Consensus 320 ~~l~~~~~~-~~~lv~~~~-~dg~~~l~~~~~~g~~~~~l~--~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~ 395 (695)
T 2bkl_A 320 ASLLSVSIV-GGHLSLEYL-KDATSEVRVATLKGKPVRTVQ--LPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSV 395 (695)
T ss_dssp CEEEEEEEE-TTEEEEEEE-ETTEEEEEEEETTCCEEEECC--CSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEET
T ss_pred CeEEEEEEE-CCEEEEEEE-ECCEEEEEEEeCCCCeeEEec--CCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEEC
Confidence 457888887 555666666 899888876552222222221 1225567778889998776633 33578999999
Q ss_pred CCCCe
Q 014125 342 QTGKW 346 (430)
Q Consensus 342 ~~~~~ 346 (430)
.+++.
T Consensus 396 ~~g~~ 400 (695)
T 2bkl_A 396 STGKS 400 (695)
T ss_dssp TTCCE
T ss_pred CCCcE
Confidence 98764
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.4e-13 Score=122.07 Aligned_cols=284 Identities=11% Similarity=-0.043 Sum_probs=181.6
Q ss_pred ECcCCceEEEecC--CC---eEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEE
Q 014125 68 WSPDGSSFLTSSE--DK---TLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFA 142 (430)
Q Consensus 68 ~sp~~~~l~s~~~--dg---~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 142 (430)
..|++++++++.. .. +|.+||..+++....+. .+..- .+++ +||++.++
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~------------------~g~~p-~i~~-------spDg~~ly 81 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVN------------------GGFLP-NPVA-------AHSGSEFA 81 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEec------------------CCCCC-CeEE-------CCCCCEEE
Confidence 3467776666553 22 88999998764321111 11111 4444 88999999
Q ss_pred EEe----------CCCcEEEEeccCCceeeeeecc--cccccccceEEEEECCCCcEEEEE-c--CCeEEEEEcCCCCCc
Q 014125 143 STT----------RDHPIHLWDATTGLLRCTYRAY--DAVDEITAAFSVAFNPTGTKIFAG-Y--NKSVRVFDVHRPGRD 207 (430)
Q Consensus 143 ~~~----------~dg~i~vwd~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~-~--d~~i~v~d~~~~~~~ 207 (430)
++. .++.|.+||..+.+.+..+... ...........+.|+|+|++|+++ . ++.|.++| .+...
T Consensus 82 v~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~- 159 (373)
T 2mad_H 82 LASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSS- 159 (373)
T ss_pred EEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCE-
Confidence 886 3678999999998888776543 110001134589999999999854 2 47899999 76321
Q ss_pred ccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEee-----ccccC-eEEEEEccCCCEEE
Q 014125 208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH-----GQEGG-VTHVQFSRDGNYLY 281 (430)
Q Consensus 208 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~-----~~~~~-i~~~~~~~~~~~l~ 281 (430)
. ..+ ... . .++.+.|++...+++.+.||.+.++|. +++...... ....+ .....+.+++..++
T Consensus 160 ~---~~~---i~~-~---~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 228 (373)
T 2mad_H 160 D---DQL---LSS-P---TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIV 228 (373)
T ss_pred E---eEE---cCC-C---ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEE
Confidence 1 110 010 0 124556667777888889999999999 776653322 11122 23356677776666
Q ss_pred EEecCCCeEEEEeCCCCceEEEEeeccc--------CCccceEEEEEcCCCCEEEEEcc----------CCcEEEEEcCC
Q 014125 282 TGGRKDPYILCWDLRKAVQVVYKLYRSS--------EHTNQRILFDIEPSGRHLGTGGQ----------DGLVHIYDLQT 343 (430)
Q Consensus 282 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~vwd~~~ 343 (430)
..+ ..+.+.+.|+.............. ........+.++|+++.++++.. .+.|.++|+.+
T Consensus 229 ~~~-~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t 307 (373)
T 2mad_H 229 WPV-YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLV 307 (373)
T ss_pred EEc-CCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCC
Confidence 666 688999999976532211111000 01222344788999988777643 35799999999
Q ss_pred CCeecccccccCCeeEEEEcCCCc-EEEEeeCCceeeecCCCccccccCCCcEEEEeecccccccc
Q 014125 344 GKWISGFQAAADTVNGFSFHPFLP-MAASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYASMMEN 408 (430)
Q Consensus 344 ~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~~~~~ 408 (430)
++.+..+.. .....+++|+|+|+ +++++.. .++.|.++|....+.+..
T Consensus 308 ~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~----------------~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 308 GQTSSQISL-GHDVDAISVAQDGGPDLYALSA----------------GTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred CEEEEEEEC-CCCcCeEEECCCCCeEEEEEcC----------------CCCeEEEEECCCCCEEee
Confidence 999888863 33689999999999 6766652 357788888887777665
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.2e-15 Score=147.75 Aligned_cols=242 Identities=11% Similarity=0.023 Sum_probs=154.9
Q ss_pred CeeeeeeeccccCccCCCCceEE-----EEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcC
Q 014125 120 ESVYDFCWFPHMSASDPTSCVFA-----STTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYN 193 (430)
Q Consensus 120 ~~v~~~~~~~~~~~~~~~~~~l~-----~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d 193 (430)
..+..++| ||||++|| .|+.+..|++||+.+++.+....... . ....++|+|||+.|+ ++.+
T Consensus 121 ~~~~~~~~-------SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~----~-~~~~~~wspDg~~l~~~~~d 188 (695)
T 2bkl_A 121 VSLGTWAV-------SWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEG----G-KYATPKWTPDSKGFYYEWLP 188 (695)
T ss_dssp EEEEEEEE-------CTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSC----C-TTCCCEECTTSSEEEEEECC
T ss_pred EEEEEEEE-------CCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCc----c-cccceEEecCCCEEEEEEec
Confidence 46788888 88999998 34445689999999987641101100 0 125789999999888 4565
Q ss_pred Ce-------------EEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCC----eEEEEEcCCce
Q 014125 194 KS-------------VRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ----TSAIYREDNME 256 (430)
Q Consensus 194 ~~-------------i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg----~v~~~d~~~~~ 256 (430)
.. |++|++.++..... +......+...+..+.|+|++. .|+.++.++ .|++++..+++
T Consensus 189 ~~~~~~~~~~~~~~~v~~~~l~t~~~~~~----lv~~~~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~~~l~~~~~~~~~ 263 (695)
T 2bkl_A 189 TDPSIKVDERPGYTTIRYHTLGTEPSKDT----VVHERTGDPTTFLQSDLSRDGK-YLFVYILRGWSENDVYWKRPGEKD 263 (695)
T ss_dssp CCTTSCGGGGGGGCEEEEEETTSCGGGCE----EEECCCCCTTCEEEEEECTTSC-CEEEEEEETTTEEEEEEECTTCSS
T ss_pred CCCCCccccCCCCCEEEEEECCCCchhce----EEEecCCCCEEEEEEEECCCCC-EEEEEEeCCCCceEEEEEcCCCCc
Confidence 54 99999976432111 1111233445788999999654 555554444 67777665554
Q ss_pred eeEEeeccccCeEEEEEccCCCEEEEEecC---CCeEEEEeCCCCceE-EEEeecccCCccceEEEEEcCCCCEEEEEcc
Q 014125 257 LLYVLHGQEGGVTHVQFSRDGNYLYTGGRK---DPYILCWDLRKAVQV-VYKLYRSSEHTNQRILFDIEPSGRHLGTGGQ 332 (430)
Q Consensus 257 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~---d~~i~i~d~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 332 (430)
. ..+..+...+....+ ++|. ++..+.. ++.|.+||+.++... ...+.. ......+..++|+ ++.++++...
T Consensus 264 ~-~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~-~~~~~~l~~~~~~-~~~lv~~~~~ 338 (695)
T 2bkl_A 264 F-RLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVP-EDSSASLLSVSIV-GGHLSLEYLK 338 (695)
T ss_dssp C-EEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEEC-CCSSCEEEEEEEE-TTEEEEEEEE
T ss_pred e-EEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEec-CCCCCeEEEEEEE-CCEEEEEEEE
Confidence 3 344445556666666 6777 6655522 578999999776420 111211 1224567788888 6778889999
Q ss_pred CCcEEEEEcC-CCCeecccccc-cCCeeEEEEcCCCcEEEEee----CCceeeecCC
Q 014125 333 DGLVHIYDLQ-TGKWISGFQAA-ADTVNGFSFHPFLPMAASSS----GHRRFPVDDF 383 (430)
Q Consensus 333 dg~i~vwd~~-~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~----~d~~~~vw~~ 383 (430)
|+..+||.++ +++....+..+ .+.+..++++|++..++... ..+.+.+|+.
T Consensus 339 dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~ 395 (695)
T 2bkl_A 339 DATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSV 395 (695)
T ss_dssp TTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEET
T ss_pred CCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEEC
Confidence 9988887665 46656666555 56788899999998666332 2466777754
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.9e-16 Score=140.16 Aligned_cols=217 Identities=7% Similarity=-0.082 Sum_probs=139.7
Q ss_pred CCCCceEEEEeCC---CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCcccc
Q 014125 135 DPTSCVFASTTRD---HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEK 210 (430)
Q Consensus 135 ~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~ 210 (430)
+|+|+.|+..... ..|.+||+.+++.......... ....+.|+|+++.|+ ++.++.|++||+..+... .
T Consensus 44 SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~-----~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~--~ 116 (396)
T 3c5m_A 44 TQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGD-----NTFGGFISTDERAFFYVKNELNLMKVDLETLEEQ--V 116 (396)
T ss_dssp CTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCB-----CTTTCEECTTSSEEEEEETTTEEEEEETTTCCEE--E
T ss_pred CCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCC-----ccccceECCCCCEEEEEEcCCcEEEEECCCCCcE--E
Confidence 8899998877543 3688889988875443322211 222478999999997 567788999998764211 1
Q ss_pred cccccCCCCCCCcceEE-------------------EEEcCCCCceEEEe-----cCCCeEEEEEcCCceeeEEeecccc
Q 014125 211 YSTLKGNKEGQAGIMSA-------------------IAFSPTHTGMLAIG-----SYSQTSAIYREDNMELLYVLHGQEG 266 (430)
Q Consensus 211 ~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~~l~~~-----~~dg~v~~~d~~~~~~~~~~~~~~~ 266 (430)
... .+...... +.|+|++. .++.. ..+..|++||+.+++..... .+..
T Consensus 117 ~~~------~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~ 188 (396)
T 3c5m_A 117 IYT------VDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTS-WEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTA 188 (396)
T ss_dssp EEE------CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCS-HHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESS
T ss_pred EEe------cccccCCCCCEEEeccCCccccccccccccCCCCc-ceeeeeeccCCCcceEEEEECCCCcEEeec-cCCc
Confidence 111 01111111 35677443 44433 45678999999887765444 4667
Q ss_pred CeEEEEEcc-CCCEEEEEecCC------CeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccC-----C
Q 014125 267 GVTHVQFSR-DGNYLYTGGRKD------PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQD-----G 334 (430)
Q Consensus 267 ~i~~~~~~~-~~~~l~~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g 334 (430)
.+..+.|+| +++.|+..+ .+ ..|.+||+...... .+.. ......+..++|+|+|++|+.++.+ +
T Consensus 189 ~~~~~~~sp~dg~~l~~~~-~~~~~~~~~~l~~~d~~~~~~~--~l~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~ 264 (396)
T 3c5m_A 189 WLGHPIYRPFDDSTVGFCH-EGPHDLVDARMWLVNEDGSNVR--KIKE-HAEGESCTHEFWIPDGSAMAYVSYFKGQTDR 264 (396)
T ss_dssp CEEEEEEETTEEEEEEEEE-CSCSSSCSCCCEEEETTSCCCE--ESSC-CCTTEEEEEEEECTTSSCEEEEEEETTTCCE
T ss_pred ccccceECCCCCCEEEEEe-cCCCCCCCceEEEEECCCCcee--Eeec-cCCCccccceEECCCCCEEEEEecCCCCccc
Confidence 889999999 788777665 33 46888998765321 2211 1113357789999999988777554 4
Q ss_pred cEEEEEcCCCCeecccccccCCeeEEEEcC-CCcEEEEee
Q 014125 335 LVHIYDLQTGKWISGFQAAADTVNGFSFHP-FLPMAASSS 373 (430)
Q Consensus 335 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~ 373 (430)
.|++||+.+++...... .. ... +.|+| +|+++++++
T Consensus 265 ~l~~~d~~~g~~~~l~~-~~-~~~-~~~s~~dg~~l~~~~ 301 (396)
T 3c5m_A 265 VIYKANPETLENEEVMV-MP-PCS-HLMSNFDGSLMVGDG 301 (396)
T ss_dssp EEEEECTTTCCEEEEEE-CC-SEE-EEEECSSSSEEEEEE
T ss_pred eEEEEECCCCCeEEeee-CC-CCC-CCccCCCCceEEEec
Confidence 49999999887543222 11 223 89999 999888765
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.69 E-value=7.9e-14 Score=121.45 Aligned_cols=238 Identities=9% Similarity=0.012 Sum_probs=158.1
Q ss_pred eeeeeeeccccCccCCCCceEEE-------EeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCC-CcEEEEEc
Q 014125 121 SVYDFCWFPHMSASDPTSCVFAS-------TTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT-GTKIFAGY 192 (430)
Q Consensus 121 ~v~~~~~~~~~~~~~~~~~~l~~-------~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~ 192 (430)
...+++| ++++.++++ +..++.|.+||..+++...... .........+.+++++++ +.+++++.
T Consensus 19 ~~~~~~~-------~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~-~~~~~~~~~~~~i~~~~~~g~l~v~~~ 90 (314)
T 1pjx_A 19 GAEGPVF-------DKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICK-PEVNGYGGIPAGCQCDRDANQLFVADM 90 (314)
T ss_dssp TCEEEEE-------CTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEEC-CEETTEECCEEEEEECSSSSEEEEEET
T ss_pred CccCceE-------CCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEe-cccCCCCCCCceEEEecCCCcEEEEEC
Confidence 3456677 678887777 5778899999988887543221 100011236789999999 87777776
Q ss_pred CCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCC---------------CeEEEEEcCCcee
Q 014125 193 NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS---------------QTSAIYREDNMEL 257 (430)
Q Consensus 193 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---------------g~v~~~d~~~~~~ 257 (430)
.+.|.+||.. +. . .... ...........+.+++++| +++++++...+ +.|..|+.. ++.
T Consensus 91 ~~~l~~~d~~-g~-~-~~~~-~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~ 164 (314)
T 1pjx_A 91 RLGLLVVQTD-GT-F-EEIA-KKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQM 164 (314)
T ss_dssp TTEEEEEETT-SC-E-EECC-SBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCE
T ss_pred CCCEEEEeCC-CC-E-EEEE-eccCCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCCeEEEECCC-CCE
Confidence 6689999986 22 1 1110 0000011224578999999 45666666554 578888765 544
Q ss_pred eEEeeccccCeEEEEEc----cCCCEEEEEecCCCeEEEEeCC-CCceEE-EEeecccCCc-cceEEEEEcCCCCEEEEE
Q 014125 258 LYVLHGQEGGVTHVQFS----RDGNYLYTGGRKDPYILCWDLR-KAVQVV-YKLYRSSEHT-NQRILFDIEPSGRHLGTG 330 (430)
Q Consensus 258 ~~~~~~~~~~i~~~~~~----~~~~~l~~~~~~d~~i~i~d~~-~~~~~~-~~~~~~~~~~-~~v~~~~~~~~~~~l~~~ 330 (430)
... ..+......++|+ |+++.|+++...++.|.+||+. ++.... ........+. ..+..++++++|+++++.
T Consensus 165 ~~~-~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~ 243 (314)
T 1pjx_A 165 IQV-DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVAN 243 (314)
T ss_dssp EEE-EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEE
T ss_pred EEe-ccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEE
Confidence 332 2344557889999 9998777775468999999986 332111 1111122232 567889999999988887
Q ss_pred ccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEee
Q 014125 331 GQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSS 373 (430)
Q Consensus 331 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 373 (430)
..++.|.+||..+++.+..+..+...+.+++|+|+++.|..++
T Consensus 244 ~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~ 286 (314)
T 1pjx_A 244 WGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTE 286 (314)
T ss_dssp ETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEE
T ss_pred cCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEe
Confidence 7788999999988887777766667899999999999555544
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.8e-14 Score=124.85 Aligned_cols=258 Identities=12% Similarity=0.064 Sum_probs=170.3
Q ss_pred CceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCce
Q 014125 61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV 140 (430)
Q Consensus 61 ~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (430)
.....+.+. +++.+++...++.|.+||..+++....+ ........+++ ++++.+
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i------------------~~~~~p~~i~~-------~~~g~l 97 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRI------------------TGFTSPRYIHF-------LSDEKA 97 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEE------------------ECCSSEEEEEE-------EETTEE
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEc------------------CCCCCCcEEEE-------eCCCeE
Confidence 345677774 4556666677899999999877543222 12245666666 557755
Q ss_pred EEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE--cCCeEEEEEcCCCCCcccccccccCCC
Q 014125 141 FASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG--YNKSVRVFDVHRPGRDFEKYSTLKGNK 218 (430)
Q Consensus 141 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~~ 218 (430)
+++...++.|.+||+.+++....+..............+++ .+++++++. .++.|.++|+.+.... ..+.
T Consensus 98 yv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~----~~i~--- 169 (328)
T 3dsm_A 98 YVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVV----DELT--- 169 (328)
T ss_dssp EEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEE----EEEE---
T ss_pred EEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEE----EEEE---
Confidence 55554889999999999988777665431111113446666 455555555 3889999999764211 1111
Q ss_pred CCCCcceEEEEEcCCCCceEEEecCC----------CeEEEEEcCCceeeEEeecc-ccCeEEEEEccCCCEEEEEecCC
Q 014125 219 EGQAGIMSAIAFSPTHTGMLAIGSYS----------QTSAIYREDNMELLYVLHGQ-EGGVTHVQFSRDGNYLYTGGRKD 287 (430)
Q Consensus 219 ~~~~~~v~~~~~~~~~~~~l~~~~~d----------g~v~~~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~~d 287 (430)
. ......+.++| ++++++++..+ +.|.++|..+++....+... ......++|+|+++.|+++. .
T Consensus 170 -~-g~~p~~i~~~~-dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~-~- 244 (328)
T 3dsm_A 170 -I-GIQPTSLVMDK-YNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWIN-N- 244 (328)
T ss_dssp -C-SSCBCCCEECT-TSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEES-S-
T ss_pred -c-CCCccceEEcC-CCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEc-c-
Confidence 1 12245788899 45566666554 78999999998877666532 23689999999999999876 4
Q ss_pred CeEEEEeCCCCceEEEEeecccCCccceEEEEEcC-CCCEEEEE----ccCCcEEEEEcCCCCeecccccccCCeeEEEE
Q 014125 288 PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEP-SGRHLGTG----GQDGLVHIYDLQTGKWISGFQAAADTVNGFSF 362 (430)
Q Consensus 288 ~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~----~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 362 (430)
.|.+||..+......... .........++++| ++.+.++. ..++.|.+||.. ++.+..+... .....++|
T Consensus 245 -~v~~~d~~t~~~~~~~~~--~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G-~~P~~~~~ 319 (328)
T 3dsm_A 245 -DIWRMPVEADRVPVRPFL--EFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVG-IIPGAFCW 319 (328)
T ss_dssp -SEEEEETTCSSCCSSCSB--CCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEE-ESEEEEEE
T ss_pred -EEEEEECCCCceeeeeee--cCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEec-cCcceEEE
Confidence 899999987643210110 11145688899999 55666665 568899999998 9988887643 23455555
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.66 E-value=3e-13 Score=114.81 Aligned_cols=246 Identities=11% Similarity=0.031 Sum_probs=164.4
Q ss_pred CCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcE
Q 014125 71 DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPI 150 (430)
Q Consensus 71 ~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i 150 (430)
.++.|++++.|+.|.+||.++++....+... ....+.++.+ +|+|++|+ +.++.|
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~----------------~~~~~~~~~~-------~pdG~ilv--s~~~~V 58 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLE----------------KGWECNSVAA-------TKAGEILF--SYSKGA 58 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECC----------------TTCCCCEEEE-------CTTSCEEE--ECBSEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCC----------------ccCCCcCeEE-------CCCCCEEE--eCCCCE
Confidence 3679999999999999999887553322211 1124555666 77899888 357779
Q ss_pred EEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-c-CCeEEEEEcCCCCCcccccccccCCCCCCCcceEEE
Q 014125 151 HLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-Y-NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAI 228 (430)
Q Consensus 151 ~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~-d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 228 (430)
..||. +++.+..+..... ..+.++.+.++|+++++. . ++.|..+|. .+.....+. +......+......+
T Consensus 59 ~~~d~-~G~~~W~~~~~~~----~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~--~Gk~l~~~~-~~~~~~~~~~~~~~v 130 (276)
T 3no2_A 59 KMITR-DGRELWNIAAPAG----CEMQTARILPDGNALVAWCGHPSTILEVNM--KGEVLSKTE-FETGIERPHAQFRQI 130 (276)
T ss_dssp EEECT-TSCEEEEEECCTT----CEEEEEEECTTSCEEEEEESTTEEEEEECT--TSCEEEEEE-ECCSCSSGGGSCSCC
T ss_pred EEECC-CCCEEEEEcCCCC----ccccccEECCCCCEEEEecCCCCEEEEEeC--CCCEEEEEe-ccCCCCcccccccCc
Confidence 99999 8998888876421 167788999999999965 3 556666654 232221111 111111222234455
Q ss_pred EEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecc
Q 014125 229 AFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRS 308 (430)
Q Consensus 229 ~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~ 308 (430)
++.+ +++++++...++.|..||.. ++.+..+... ....++.+.++|+.++++. .++.|..+|..+++.....-...
T Consensus 131 ~~~~-~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~-~~~~v~~~d~~tG~~~w~~~~~~ 206 (276)
T 3no2_A 131 NKNK-KGNYLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACG-DAHCFVQLNLESNRIVRRVNAND 206 (276)
T ss_dssp EECT-TSCEEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECB-TTSEEEEECTTTCCEEEEEEGGG
T ss_pred eECC-CCCEEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeC-CCCeEEEEeCcCCcEEEEecCCC
Confidence 6778 66789999999999999998 9988888754 4566788899999888887 78899999999875544322110
Q ss_pred -c-CCccceEEEEEcCCCCEEEEEccC--------CcEEEEEc-CCCCeecccccc
Q 014125 309 -S-EHTNQRILFDIEPSGRHLGTGGQD--------GLVHIYDL-QTGKWISGFQAA 353 (430)
Q Consensus 309 -~-~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~vwd~-~~~~~~~~~~~~ 353 (430)
. .....+..++..++|.++++.... +..+++.+ .+++.+.++..+
T Consensus 207 ~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~ 262 (276)
T 3no2_A 207 IEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDK 262 (276)
T ss_dssp SBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCT
T ss_pred CCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecCc
Confidence 1 122347788889999988876321 23355555 467776666543
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.9e-14 Score=125.25 Aligned_cols=233 Identities=10% Similarity=0.107 Sum_probs=147.6
Q ss_pred CceeEEEECcCCceEEEecCC---Ce--EEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccC
Q 014125 61 NFLKGIKWSPDGSSFLTSSED---KT--LRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASD 135 (430)
Q Consensus 61 ~~v~~~~~sp~~~~l~s~~~d---g~--v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 135 (430)
..+..++|||||++||.++.+ +. |.+|++.+++. ........ +..++| +
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~------------------~~l~~~~~-~~~~~w-------s 112 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSS------------------KKILEAKN-IRSLEW-------N 112 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEE------------------EEEEEESE-EEEEEE-------C
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCce------------------EEEEcCCC-ccceeE-------C
Confidence 457889999999999987754 33 77777765421 11111223 888899 7
Q ss_pred CCCceEEEEeCC---------------------------CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEE
Q 014125 136 PTSCVFASTTRD---------------------------HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKI 188 (430)
Q Consensus 136 ~~~~~l~~~~~d---------------------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 188 (430)
|+++.|+.++.+ ..|.+||+.+++.+..+.. . .+..+.|+|++ ++
T Consensus 113 pdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~------~~~~~~~spdg-~~ 184 (347)
T 2gop_A 113 EDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P------RFSSGIWHRDK-IV 184 (347)
T ss_dssp TTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E------TTCEEEEETTE-EE
T ss_pred CCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C------CcccccCCCCe-EE
Confidence 789988887642 5699999988876344433 1 45688999999 66
Q ss_pred EEE-cC------C-eEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCC--------CeEEEEEc
Q 014125 189 FAG-YN------K-SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS--------QTSAIYRE 252 (430)
Q Consensus 189 ~~~-~d------~-~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------g~v~~~d~ 252 (430)
+++ .+ . ...+|.++ .+. .. .+. .+ ..+..+ +|++. .|+.++.+ ..|.+||
T Consensus 185 ~~~~~~~~~~~~~~~~~l~~~d-~~~-~~---~l~----~~-~~~~~~--spdg~-~l~~~~~~~~~~~~~~~~l~~~d- 250 (347)
T 2gop_A 185 VNVPHREIIPQYFKFWDIYIWE-DGK-EE---KMF----EK-VSFYAV--DSDGE-RILLYGKPEKKYMSEHNKLYIYD- 250 (347)
T ss_dssp EEEECCCSSCCSSCCEEEEEEE-TTE-EE---EEE----EE-ESEEEE--EECSS-CEEEEECCSSSCCCSSCEEEEEC-
T ss_pred EEEecccccccccccccEEEeC-CCc-eE---Eec----cC-cceeeE--CCCCC-EEEEEEccccCCccccceEEEEC-
Confidence 654 32 2 44555554 221 11 111 11 334444 88555 45444432 4688888
Q ss_pred CCceeeEEeeccccCeEE-EEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEc
Q 014125 253 DNMELLYVLHGQEGGVTH-VQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGG 331 (430)
Q Consensus 253 ~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 331 (430)
+++.......+...+.. +.|+ ++ .+++++ .++.+++| +.++ ... .+ ..+...+..++|+| .++++++
T Consensus 251 -~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~-~~~~~~l~-~~~g-~~~-~~---~~~~~~v~~~~~s~--~~~~~~~ 318 (347)
T 2gop_A 251 -GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLF-EEGSVNLY-IWDG-EIK-PI---AKGRHWIMGFDVDE--IVVYLKE 318 (347)
T ss_dssp -SSCEEESSTTCCSEEEEEEEET-TE-EEEEEE-ETTEEEEE-EESS-SEE-EE---ECSSSEEEEEEESS--SEEEEEE
T ss_pred -CCceEeccccCCcccCCccEEc-Cc-EEEEEe-cCCcEEEE-EcCC-ceE-EE---ecCCCeEEeeeeeC--cEEEEEc
Confidence 55555445556677886 9999 88 777777 89999999 8743 322 22 13366789999999 6777777
Q ss_pred cCCcE-EEEEcCCCCeecccccccC
Q 014125 332 QDGLV-HIYDLQTGKWISGFQAAAD 355 (430)
Q Consensus 332 ~dg~i-~vwd~~~~~~~~~~~~~~~ 355 (430)
.++.. .+|.++ ++ ...+..|..
T Consensus 319 ~~~~~~~l~~~~-g~-~~~lt~~n~ 341 (347)
T 2gop_A 319 TATRLRELFTWD-GE-EKQLTDYND 341 (347)
T ss_dssp CSSSCCEEEEES-SS-EEECCCTTS
T ss_pred CCCChHHheEeC-Cc-EEEeccccH
Confidence 77664 777766 54 334444443
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.64 E-value=9.1e-14 Score=121.51 Aligned_cols=288 Identities=11% Similarity=0.044 Sum_probs=183.2
Q ss_pred EECcCCceEEEecC-----CCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceE
Q 014125 67 KWSPDGSSFLTSSE-----DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF 141 (430)
Q Consensus 67 ~~sp~~~~l~s~~~-----dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 141 (430)
...|+++.++.... ++.|.+.|..+++....+. .+. .+ . +++ +|||+++
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~----------------vG~-~P-~-va~-------spDG~~l 92 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMID----------------GGF-LP-N-PVV-------ADDGSFI 92 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEE----------------ECS-SC-E-EEE-------CTTSSCE
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEE----------------CCC-CC-c-EEE-------CCCCCEE
Confidence 34678877776654 6799999998765432211 111 12 2 555 8899998
Q ss_pred EEEe----------CCCcEEEEeccCCceeeeeeccccc--ccccceEEEEECCCCcEEEEE-c--CCeEEEEEcCCCCC
Q 014125 142 ASTT----------RDHPIHLWDATTGLLRCTYRAYDAV--DEITAAFSVAFNPTGTKIFAG-Y--NKSVRVFDVHRPGR 206 (430)
Q Consensus 142 ~~~~----------~dg~i~vwd~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~-~--d~~i~v~d~~~~~~ 206 (430)
+++. .++.|.+||..+.+.+..+...... ........+.|+|||++++++ . ++.|.++|+.+...
T Consensus 93 yVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~v 172 (386)
T 3sjl_D 93 AHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF 172 (386)
T ss_dssp EEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEE
T ss_pred EEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcE
Confidence 8876 3678999999999988887653210 001134579999999998854 3 68999999987321
Q ss_pred cccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCC-ceeeEEeecc----ccCeE-EEEEc-cCCCE
Q 014125 207 DFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN-MELLYVLHGQ----EGGVT-HVQFS-RDGNY 279 (430)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~-~~~~~~~~~~----~~~i~-~~~~~-~~~~~ 279 (430)
...+.. .+ +....|.+...+++.+.||++.+.++.+ ++.......+ ..++. ...|. ++|++
T Consensus 173 ----v~tI~v--~g------~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~ 240 (386)
T 3sjl_D 173 ----KRMLDV--PD------CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRL 240 (386)
T ss_dssp ----EEEEEC--CS------EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEE
T ss_pred ----EEEEEC--CC------cceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcE
Confidence 111110 01 1122343666777888899999999876 5543221111 12221 24554 67766
Q ss_pred EEEEecCCCeEEEEeCCCCceEEEEeec--------ccCCccceEEEEEcCCCCEEEEEcc----------CCcEEEEEc
Q 014125 280 LYTGGRKDPYILCWDLRKAVQVVYKLYR--------SSEHTNQRILFDIEPSGRHLGTGGQ----------DGLVHIYDL 341 (430)
Q Consensus 280 l~~~~~~d~~i~i~d~~~~~~~~~~~~~--------~~~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~vwd~ 341 (430)
++ .+ .+|.|++.|+.+.......... ..-.......++++|+++.++.... .+.|.+.|+
T Consensus 241 ~~-vs-~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~ 318 (386)
T 3sjl_D 241 VW-PT-YTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDA 318 (386)
T ss_dssp EE-EB-TTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEET
T ss_pred EE-Ee-CCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEEC
Confidence 55 44 5899999999765422111110 0001122334777999888777643 257999999
Q ss_pred CCCCeecccccccCCeeEEEEcCCCc-EEEEeeCCceeeecCCCccccccCCCcEEEEeecccccccccCC
Q 014125 342 QTGKWISGFQAAADTVNGFSFHPFLP-MAASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYASMMENADG 411 (430)
Q Consensus 342 ~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~ 411 (430)
.+++.+..+... ..+.+|+++|+++ +|+++.. .++.|.++|...++.+..+..
T Consensus 319 ~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~----------------~~~~VsViD~~t~k~~~~i~~ 372 (386)
T 3sjl_D 319 KTGERLAKFEMG-HEIDSINVSQDEKPLLYALST----------------GDKTLYIHDAESGEELRSVNQ 372 (386)
T ss_dssp TTCCEEEEEEEE-EEECEEEECSSSSCEEEEEET----------------TTTEEEEEETTTCCEEEEECC
T ss_pred CCCeEEEEEECC-CCcceEEECCCCCeEEEEEcC----------------CCCeEEEEECCCCcEEEEecC
Confidence 999999988743 3788999999997 6666542 467788888887777666654
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=3e-12 Score=110.50 Aligned_cols=236 Identities=8% Similarity=0.029 Sum_probs=164.2
Q ss_pred CeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEE
Q 014125 120 ESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRV 198 (430)
Q Consensus 120 ~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v 198 (430)
..+.++++ +++|+++++...++.|.+||.. ++.. .+.... ....+.++++++++.++++. .++.|..
T Consensus 15 ~~~~~i~~-------d~~g~l~v~~~~~~~v~~~d~~-~~~~-~~~~~~---~~~~~~~i~~~~~g~l~v~~~~~~~i~~ 82 (299)
T 2z2n_A 15 TGPYGITV-------SDKGKVWITQHKANMISCINLD-GKIT-EYPLPT---PDAKVMCLTISSDGEVWFTENAANKIGR 82 (299)
T ss_dssp CCEEEEEE-------CTTSCEEEEETTTTEEEEECTT-CCEE-EEECSS---TTCCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred CCccceEE-------CCCCCEEEEecCCCcEEEEcCC-CCeE-EecCCc---ccCceeeEEECCCCCEEEeCCCCCeEEE
Confidence 46778887 7788887777668899999988 5543 222211 11368899999999988876 4788999
Q ss_pred EEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeE-EeeccccCeEEEEEccCC
Q 014125 199 FDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLY-VLHGQEGGVTHVQFSRDG 277 (430)
Q Consensus 199 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~-~~~~~~~~i~~~~~~~~~ 277 (430)
|+... . ..... . ......+..++++| ++.++++...++.|..||. +++... ........+..++++++|
T Consensus 83 ~~~~g--~-~~~~~-~----~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g 152 (299)
T 2z2n_A 83 ITKKG--I-IKEYT-L----PNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDN 152 (299)
T ss_dssp ECTTS--C-EEEEE-C----SSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTS
T ss_pred ECCCC--c-EEEEe-C----CCcCCCceeeEECC-CCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCC
Confidence 98752 1 11111 1 11234688999998 5667777777899999998 554432 222344578999999999
Q ss_pred CEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecc-cccccCC
Q 014125 278 NYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISG-FQAAADT 356 (430)
Q Consensus 278 ~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~ 356 (430)
..+++.. .++.|..||. ++...... .......+..++++++|.+.++...++.|.+||. +++.... +..+...
T Consensus 153 ~l~v~~~-~~~~i~~~~~-~g~~~~~~---~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~ 226 (299)
T 2z2n_A 153 ALWFTEN-QNNAIGRITE-SGDITEFK---IPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNAR 226 (299)
T ss_dssp CEEEEET-TTTEEEEECT-TCCEEEEE---CSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCC
T ss_pred CEEEEeC-CCCEEEEEcC-CCcEEEee---CCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCC
Confidence 7666655 6789999998 44332211 1233456789999999998777777889999999 6664332 2334467
Q ss_pred eeEEEEcCCCcEEEEeeCCceeeecCC
Q 014125 357 VNGFSFHPFLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 357 v~~~~~~~~~~~l~s~~~d~~~~vw~~ 383 (430)
+.+++++++|.++++...++.|.+++.
T Consensus 227 ~~~i~~~~~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 227 PHAITAGAGIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp EEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred ceeEEECCCCCEEEeccCCceEEEECC
Confidence 899999999997777766777777764
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.63 E-value=9.3e-13 Score=113.54 Aligned_cols=232 Identities=12% Similarity=0.082 Sum_probs=154.1
Q ss_pred eeeeeeeccccCccCC-CCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEE
Q 014125 121 SVYDFCWFPHMSASDP-TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVF 199 (430)
Q Consensus 121 ~v~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~ 199 (430)
-..+..| ++ ++.++++...++.|..||..+++.. .+... ..+.+++++++++++++. ++.|.+|
T Consensus 14 ~~Egp~w-------~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~------~~~~~i~~~~dG~l~v~~-~~~l~~~ 78 (297)
T 3g4e_A 14 CGESPVW-------EEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVTMD------APVSSVALRQSGGYVATI-GTKFCAL 78 (297)
T ss_dssp BEEEEEE-------ETTTTEEEEEETTTTEEEEEETTTCCEE-EEECS------SCEEEEEEBTTSSEEEEE-TTEEEEE
T ss_pred cccCCeE-------ECCCCEEEEEECCCCEEEEEECCCCcEE-EEeCC------CceEEEEECCCCCEEEEE-CCeEEEE
Confidence 3445667 44 4556777777899999999887652 33222 268899999999966554 6789999
Q ss_pred EcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecC-----------CCeEEEEEcCCceeeEEeeccccCe
Q 014125 200 DVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY-----------SQTSAIYREDNMELLYVLHGQEGGV 268 (430)
Q Consensus 200 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----------dg~v~~~d~~~~~~~~~~~~~~~~i 268 (430)
|..+.. ...+.... .......+..++++|+ ++++++... .+.|..++.. ++.. .+.......
T Consensus 79 d~~~g~--~~~~~~~~--~~~~~~~~~di~~d~d-G~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~-~~~~~~~~p 151 (297)
T 3g4e_A 79 NWKEQS--AVVLATVD--NDKKNNRFNDGKVDPA-GRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVK-KYFDQVDIS 151 (297)
T ss_dssp ETTTTE--EEEEEECC--TTCSSEEEEEEEECTT-SCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEE-EEEEEESBE
T ss_pred ECCCCc--EEEEEecC--CCCCCCCCCCEEECCC-CCEEEecCCcccccccccCCCcEEEEEECC-CCEE-EEeeccccc
Confidence 986532 11111110 1112345889999994 455554422 2345555443 3332 233344556
Q ss_pred EEEEEccCCCEEEEEecCCCeEEEEeCC--CCceEE-EEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCC
Q 014125 269 THVQFSRDGNYLYTGGRKDPYILCWDLR--KAVQVV-YKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGK 345 (430)
Q Consensus 269 ~~~~~~~~~~~l~~~~~~d~~i~i~d~~--~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 345 (430)
+.++|+|+++.|+.+...++.|.+|++. ++.... ..+.........+..++++++|++.++...++.|.+||..+++
T Consensus 152 ngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~ 231 (297)
T 3g4e_A 152 NGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGK 231 (297)
T ss_dssp EEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCC
T ss_pred cceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCce
Confidence 8999999999887776578999999874 332111 1122222334567889999999888877778889999999999
Q ss_pred eecccccccCCeeEEEEc-CCCcEEEEeeC
Q 014125 346 WISGFQAAADTVNGFSFH-PFLPMAASSSG 374 (430)
Q Consensus 346 ~~~~~~~~~~~v~~~~~~-~~~~~l~s~~~ 374 (430)
.+..+..+...+++++|. |+++.|..++.
T Consensus 232 ~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 232 RLQTVKLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEEEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred EEEEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence 998888777789999998 88876655553
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.62 E-value=5.5e-13 Score=116.57 Aligned_cols=266 Identities=11% Similarity=0.087 Sum_probs=161.1
Q ss_pred EEEECcCCceEEEec----------CCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCcc
Q 014125 65 GIKWSPDGSSFLTSS----------EDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS 134 (430)
Q Consensus 65 ~~~~sp~~~~l~s~~----------~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 134 (430)
.+++||||++|+++. .++.|.+||..+.+....+. ...+..+. ..-.|....+
T Consensus 82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~----------------v~~g~r~~-~g~~P~~~a~ 144 (386)
T 3sjl_D 82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIE----------------LPDAPRFL-VGTYPWMTSL 144 (386)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEE----------------ETTCCCCC-BSCCGGGEEE
T ss_pred cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEE----------------CCCccccc-cCCCCceEEE
Confidence 499999999888775 35789999998875432221 11100000 0002333444
Q ss_pred CCCCceEEEEeC--CCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEE-EEEcCCeEEEEEcCCCCCccccc
Q 014125 135 DPTSCVFASTTR--DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKI-FAGYNKSVRVFDVHRPGRDFEKY 211 (430)
Q Consensus 135 ~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~d~~i~v~d~~~~~~~~~~~ 211 (430)
+|||++++++.. ++.|.++|+.+++.+..+..... ...+....+.+ +.+.||.+.+.++...+......
T Consensus 145 spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~--------~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~ 216 (386)
T 3sjl_D 145 TPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC--------YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITH 216 (386)
T ss_dssp CTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE--------EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEE
T ss_pred cCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc--------ceeecCCCceeEEECCCCCEEEEECCCCCeEEEee
Confidence 899999988864 68899999999999888865321 11222122333 35577777777776533221100
Q ss_pred ccccCCCCCCCcceE-EEEEcCCCCceEEEecCCCeEEEEEcCCce--eeEEee----------ccccCeEEEEEccCCC
Q 014125 212 STLKGNKEGQAGIMS-AIAFSPTHTGMLAIGSYSQTSAIYREDNME--LLYVLH----------GQEGGVTHVQFSRDGN 278 (430)
Q Consensus 212 ~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~--~~~~~~----------~~~~~i~~~~~~~~~~ 278 (430)
...+.....++. ...|.+.++++++ .+.+|+|++.|+.+.. ....+. ...+....++++|+++
T Consensus 217 ---~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~ 292 (386)
T 3sjl_D 217 ---TEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALD 292 (386)
T ss_dssp ---CCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTT
T ss_pred ---cceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCC
Confidence 011111111221 2355432444444 5558999999997654 222221 0123445688899999
Q ss_pred EEEEEecC---------CCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCC-EEEEE-ccCCcEEEEEcCCCCee
Q 014125 279 YLYTGGRK---------DPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGR-HLGTG-GQDGLVHIYDLQTGKWI 347 (430)
Q Consensus 279 ~l~~~~~~---------d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~-~~dg~i~vwd~~~~~~~ 347 (430)
.+++.... .+.|.++|+.+.+... .+. -...+..++++||++ +|++. ..++.|.++|..+++.+
T Consensus 293 ~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~-~i~----vg~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~ 367 (386)
T 3sjl_D 293 RIYLLVDQRDEWRHKTASRFVVVLDAKTGERLA-KFE----MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEEL 367 (386)
T ss_dssp EEEEEEEECCTTCTTSCEEEEEEEETTTCCEEE-EEE----EEEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred eEEEEeccccccccCCCCCEEEEEECCCCeEEE-EEE----CCCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEE
Confidence 98887511 2579999999985443 321 123677899999996 66664 45899999999999999
Q ss_pred cccccccCCeeEEEEcCC
Q 014125 348 SGFQAAADTVNGFSFHPF 365 (430)
Q Consensus 348 ~~~~~~~~~v~~~~~~~~ 365 (430)
.++... +.-..|.+++|
T Consensus 368 ~~i~~~-~~p~~l~~s~d 384 (386)
T 3sjl_D 368 RSVNQL-GHGPQVITTAD 384 (386)
T ss_dssp EEECCC-CSSCCEEEECC
T ss_pred EEecCC-CCCceeEECCc
Confidence 888743 33345555554
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.8e-13 Score=133.45 Aligned_cols=239 Identities=13% Similarity=0.039 Sum_probs=152.1
Q ss_pred eeeeeeeccccCccCCCCceEEEEeCC-----CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCC
Q 014125 121 SVYDFCWFPHMSASDPTSCVFASTTRD-----HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNK 194 (430)
Q Consensus 121 ~v~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~ 194 (430)
.+..++| ||||++|+.++.+ ..|++||+.+++.+.... ... .+..++|+|| +.|+ ++.++
T Consensus 164 ~~~~~~~-------SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~-~~~-----~~~~~~wspD-~~l~~~~~~~ 229 (741)
T 1yr2_A 164 ALDAWAA-------SDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL-KWV-----KFSGLAWLGN-DALLYSRFAE 229 (741)
T ss_dssp EEEEEEE-------CTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE-EEE-----ESCCCEESTT-SEEEEEECCC
T ss_pred EEEeEEE-------CCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC-CCc-----eeccEEEECC-CEEEEEEecC
Confidence 6777888 8899999877654 359999999998754311 111 2357899999 8777 44443
Q ss_pred --------------eEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCC-----CeEEEEEcCCc
Q 014125 195 --------------SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS-----QTSAIYREDNM 255 (430)
Q Consensus 195 --------------~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~v~~~d~~~~ 255 (430)
.|++|++.++..... +......+...+..+.|+|++. .|+..+.+ ..|++||+.++
T Consensus 230 ~~~~~~~~~~~~~~~v~~~~lgt~~~~~~----lv~~~~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~~~~l~~~d~~~~ 304 (741)
T 1yr2_A 230 PKEGQAFQALNYNQTVWLHRLGTPQSADQ----PVFATPELPKRGHGASVSSDGR-WVVITSSEGTDPVNTVHVARVTNG 304 (741)
T ss_dssp C--------CCCCCEEEEEETTSCGGGCE----EEECCTTCTTCEEEEEECTTSC-EEEEEEECTTCSCCEEEEEEEETT
T ss_pred cccccccccCCCCCEEEEEECCCCchhCE----EEeccCCCCeEEEEEEECCCCC-EEEEEEEccCCCcceEEEEECCCC
Confidence 388899865421111 1111123334588999999554 55554433 48999999876
Q ss_pred --eeeEEeeccccCeEEEEEccCCCEEEEEecC---CCeEEEEeCCCCc-eEEEEeecccCCccceEEEEEcCCCCEEEE
Q 014125 256 --ELLYVLHGQEGGVTHVQFSRDGNYLYTGGRK---DPYILCWDLRKAV-QVVYKLYRSSEHTNQRILFDIEPSGRHLGT 329 (430)
Q Consensus 256 --~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~---d~~i~i~d~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 329 (430)
+....+..+...+.... +|+|+.|+..+.. ++.|.+||+.++. ... .+. ..+...+..++++ ++.++++
T Consensus 305 ~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~-~l~--~~~~~~l~~~~~~-~~~lv~~ 379 (741)
T 1yr2_A 305 KIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFD-TVV--PESKDNLESVGIA-GNRLFAS 379 (741)
T ss_dssp EECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEE-EEE--CCCSSEEEEEEEE-BTEEEEE
T ss_pred CCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccE-EEe--cCCCCeEEEEEEE-CCEEEEE
Confidence 31445554555555554 4899988887722 3469999988742 222 222 2334456677887 5677888
Q ss_pred EccCCcEEEEEcC-CCCeeccccc-ccCCeeEEEEcCCCcEEEEe-e---CCceeeecCC
Q 014125 330 GGQDGLVHIYDLQ-TGKWISGFQA-AADTVNGFSFHPFLPMAASS-S---GHRRFPVDDF 383 (430)
Q Consensus 330 ~~~dg~i~vwd~~-~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~-~---~d~~~~vw~~ 383 (430)
...|+..+||.++ +++....+.. +.+.+..+.++|+++.|+.. + ..+.+.+||.
T Consensus 380 ~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~ 439 (741)
T 1yr2_A 380 YIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDP 439 (741)
T ss_dssp EEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEET
T ss_pred EEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEEC
Confidence 8889887777554 4555565654 35678899999998855532 2 2356666653
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-13 Score=123.26 Aligned_cols=284 Identities=11% Similarity=0.040 Sum_probs=182.3
Q ss_pred cCCceEEEecC-C----CeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEE
Q 014125 70 PDGSSFLTSSE-D----KTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFAST 144 (430)
Q Consensus 70 p~~~~l~s~~~-d----g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 144 (430)
|+++.++++.. + +.|.++|..+.+....+. .+. .+ .+.+ +||++.++++
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~----------------vG~-~P--gia~-------SpDgk~lyVa 135 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTD----------------GGF-LP--HPVA-------AEDGSFFAQA 135 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEE----------------ECS-SC--EEEE-------CTTSSCEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEE----------------CCC-CC--ceEE-------CCCCCEEEEE
Confidence 35555544433 2 699999998775432221 111 12 4555 8899998888
Q ss_pred e----------CCCcEEEEeccCCceeeeeecc--cccccccceEEEEECCCCcEEEEE-c--CCeEEEEEcCCCCCccc
Q 014125 145 T----------RDHPIHLWDATTGLLRCTYRAY--DAVDEITAAFSVAFNPTGTKIFAG-Y--NKSVRVFDVHRPGRDFE 209 (430)
Q Consensus 145 ~----------~dg~i~vwd~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~-~--d~~i~v~d~~~~~~~~~ 209 (430)
. .++.|.++|..+.+.+..+... ...........+.++|||++++++ . ++.|.+.|+.+...
T Consensus 136 n~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kv--- 212 (426)
T 3c75_H 136 STVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTF--- 212 (426)
T ss_dssp EEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEE---
T ss_pred eccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeE---
Confidence 6 4678999999999988887653 100001134578999999999865 2 57899999987321
Q ss_pred ccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEE----eeccccCe-EEEEEccCCCEEEEEe
Q 014125 210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYV----LHGQEGGV-THVQFSRDGNYLYTGG 284 (430)
Q Consensus 210 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~----~~~~~~~i-~~~~~~~~~~~l~~~~ 284 (430)
...+.. + . +....|++...+++.+.||.+.+.+..+++.... +.....++ ..+.|.+++..++...
T Consensus 213 -v~~I~v---~--g---~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s 283 (426)
T 3c75_H 213 -DRMLDV---P--D---CYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPT 283 (426)
T ss_dssp -EEEEEC---C--S---EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEB
T ss_pred -EEEEEc---C--C---ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEe
Confidence 111110 0 0 1233454556777777888888888866654422 11111221 2457799999888887
Q ss_pred cCCCeEEEEeCCCCceEEEEeeccc--------CCccceEEEEEcCCCCEEEEEcc----------CCcEEEEEcCCCCe
Q 014125 285 RKDPYILCWDLRKAVQVVYKLYRSS--------EHTNQRILFDIEPSGRHLGTGGQ----------DGLVHIYDLQTGKW 346 (430)
Q Consensus 285 ~~d~~i~i~d~~~~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~vwd~~~~~~ 346 (430)
..+.|.+.|+.............. ........++++|+++.+++... ++.|.++|+.+.+.
T Consensus 284 -~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kv 362 (426)
T 3c75_H 284 -YTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGER 362 (426)
T ss_dssp -TTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE
T ss_pred -CCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeE
Confidence 789999999876532211111000 00111123689999887776642 35799999999999
Q ss_pred ecccccccCCeeEEEEcCCCc-EEEEeeCCceeeecCCCccccccCCCcEEEEeeccccccccc
Q 014125 347 ISGFQAAADTVNGFSFHPFLP-MAASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYASMMENA 409 (430)
Q Consensus 347 ~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~~~~~~ 409 (430)
+..+.... ...+++|+|+++ +++++.. .++.|.++|....+.+..+
T Consensus 363 v~~I~vg~-~P~gia~spDg~~~lyv~n~----------------~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 363 INKIELGH-EIDSINVSQDAEPLLYALSA----------------GTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEEEEEEE-EECEEEECCSSSCEEEEEET----------------TTTEEEEEETTTCCEEEEE
T ss_pred EEEEECCC-CcCeEEEccCCCEEEEEEcC----------------CCCeEEEEECCCCCEEEEe
Confidence 99887433 589999999999 8887763 3678888888877777664
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.4e-13 Score=132.59 Aligned_cols=248 Identities=11% Similarity=0.025 Sum_probs=149.4
Q ss_pred cCCCceeEEEECcCCceEEEecCC-----CeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccC
Q 014125 58 IPNNFLKGIKWSPDGSSFLTSSED-----KTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS 132 (430)
Q Consensus 58 ~h~~~v~~~~~sp~~~~l~s~~~d-----g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 132 (430)
+|...+..++|||||++||.++.+ ..|++||+.+++.... ..+...+..++|
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~------------------~~~~~~~~~~~w----- 216 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD------------------ELKWVKFSGLAW----- 216 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE------------------EEEEEESCCCEE-----
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc------------------cCCCceeccEEE-----
Confidence 344468899999999999987653 4699999988753210 001112356778
Q ss_pred ccCCCCceEEEEeCCCc--------------EEEEeccCCcee--eeeecccccccccceEEEEECCCCcEEE-EEcC--
Q 014125 133 ASDPTSCVFASTTRDHP--------------IHLWDATTGLLR--CTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYN-- 193 (430)
Q Consensus 133 ~~~~~~~~l~~~~~dg~--------------i~vwd~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d-- 193 (430)
+|| +.|+.++.++. |++|++.++... ..+.... +...+..+.|+|||++|+ ++.+
T Consensus 217 --spD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~---~~~~~~~~~~SpDG~~l~~~~~~~~ 290 (741)
T 1yr2_A 217 --LGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPE---LPKRGHGASVSSDGRWVVITSSEGT 290 (741)
T ss_dssp --STT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTT---CTTCEEEEEECTTSCEEEEEEECTT
T ss_pred --ECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCC---CCeEEEEEEECCCCCEEEEEEEccC
Confidence 778 88888877654 889998877532 2222211 112467899999999888 4433
Q ss_pred ---CeEEEEEcCCCCCc-ccccccccCCCCCCCcceEEEEEcCCCCceEEEecC---CCeEEEEEcCCc--eeeEEeecc
Q 014125 194 ---KSVRVFDVHRPGRD-FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY---SQTSAIYREDNM--ELLYVLHGQ 264 (430)
Q Consensus 194 ---~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~v~~~d~~~~--~~~~~~~~~ 264 (430)
..|++||+..+... .. .+. .+........ +|++..+++.... ++.|.+||+.++ +....+..+
T Consensus 291 ~~~~~l~~~d~~~~~~~~~~---~l~----~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~ 362 (741)
T 1yr2_A 291 DPVNTVHVARVTNGKIGPVT---ALI----PDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPES 362 (741)
T ss_dssp CSCCEEEEEEEETTEECCCE---EEE----CSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCC
T ss_pred CCcceEEEEECCCCCCcccE---Eec----CCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCC
Confidence 38999998764111 11 111 1112233333 3645544444332 456999999874 334444444
Q ss_pred ccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEE----ccCCcEEEEE
Q 014125 265 EGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTG----GQDGLVHIYD 340 (430)
Q Consensus 265 ~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----~~dg~i~vwd 340 (430)
...+..++|+ ++..+++.. .|+..++|.+.........+. ......+..++++|++..|+.. ...+.|++||
T Consensus 363 ~~~l~~~~~~-~~~lv~~~~-~dg~~~l~~~~~~g~~~~~l~--~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d 438 (741)
T 1yr2_A 363 KDNLESVGIA-GNRLFASYI-HDAKSQVLAFDLDGKPAGAVS--LPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALD 438 (741)
T ss_dssp SSEEEEEEEE-BTEEEEEEE-ETTEEEEEEEETTSCEEEECB--CSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEE
T ss_pred CCeEEEEEEE-CCEEEEEEE-ECCEEEEEEEeCCCCceeecc--CCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEE
Confidence 4556677776 455555565 888877775542112222221 1235668889999998766522 3357899999
Q ss_pred cCCCCe
Q 014125 341 LQTGKW 346 (430)
Q Consensus 341 ~~~~~~ 346 (430)
+.+++.
T Consensus 439 ~~tg~~ 444 (741)
T 1yr2_A 439 PATAKT 444 (741)
T ss_dssp TTTTEE
T ss_pred CCCCcE
Confidence 988763
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.59 E-value=9.2e-12 Score=110.37 Aligned_cols=250 Identities=11% Similarity=0.013 Sum_probs=155.0
Q ss_pred EEEECcCCceEEEec----------CCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCcc
Q 014125 65 GIKWSPDGSSFLTSS----------EDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS 134 (430)
Q Consensus 65 ~~~~sp~~~~l~s~~----------~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 134 (430)
.+++||||++|+.+. .++.|.+||..+.+....+.... . .....+..-..+.|
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~--------~--~~~~~g~~p~~~~~------- 132 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPD--------A--PRFDVGPYSWMNAN------- 132 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCC--------c--cccccCCCccceEE-------
Confidence 899999999999885 36789999998664432221110 0 00000112234445
Q ss_pred CCCCceEEEEeC--CCcEEEEeccCCceeee-eecccccccccceEEEEECCCCcE--EEEEcCCeEEEEEcCCCCCccc
Q 014125 135 DPTSCVFASTTR--DHPIHLWDATTGLLRCT-YRAYDAVDEITAAFSVAFNPTGTK--IFAGYNKSVRVFDVHRPGRDFE 209 (430)
Q Consensus 135 ~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~d~~i~v~d~~~~~~~~~ 209 (430)
+|||++|+++.. ++.|.++| .+++.+.. +.... ++.+.|++.. ++.+.||.+.++|. .......
T Consensus 133 spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~---------~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~ 201 (373)
T 2mad_H 133 TPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT---------CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGA 201 (373)
T ss_pred CCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc---------eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEE
Confidence 889999998874 47899999 99988766 54322 2445555533 33457899999998 5322111
Q ss_pred ccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCce--eeEEeec----------cccCeEEEEEccCC
Q 014125 210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME--LLYVLHG----------QEGGVTHVQFSRDG 277 (430)
Q Consensus 210 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~--~~~~~~~----------~~~~i~~~~~~~~~ 277 (430)
.. ......+.........+.++++.++++. ..+.+.+.|+.+.. .+..+.. .......++++|++
T Consensus 202 -~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~ 278 (373)
T 2mad_H 202 -GL-VGAMLTAAQNLLTQPAQANKSGRIVWPV-YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSS 278 (373)
T ss_pred -Ee-ccccccCCcceeecceeEecCCEEEEEc-CCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCC
Confidence 00 0000011111122345666555455544 67899999987543 2222211 11234457899999
Q ss_pred CEEEEEec---------CCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCC-EEEEEc-cCCcEEEEEcCCCCe
Q 014125 278 NYLYTGGR---------KDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGR-HLGTGG-QDGLVHIYDLQTGKW 346 (430)
Q Consensus 278 ~~l~~~~~---------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-~dg~i~vwd~~~~~~ 346 (430)
+.++++.. ..+.|.++|+.+.+.. ..+. .......++|+|||+ +++++. .++.|.++|+.+++.
T Consensus 279 ~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv-~~i~----~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~v 353 (373)
T 2mad_H 279 DGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTS-SQIS----LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQ 353 (373)
T ss_pred CEEEEEeccCCcccccCCCCeEEEEECCCCEEE-EEEE----CCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCE
Confidence 98888752 1357999999887433 2331 223578899999999 777777 489999999999999
Q ss_pred eccc
Q 014125 347 ISGF 350 (430)
Q Consensus 347 ~~~~ 350 (430)
+..+
T Consensus 354 v~~i 357 (373)
T 2mad_H 354 DQST 357 (373)
T ss_pred Eeee
Confidence 8773
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.6e-12 Score=114.66 Aligned_cols=246 Identities=13% Similarity=0.082 Sum_probs=159.6
Q ss_pred CceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCce
Q 014125 61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV 140 (430)
Q Consensus 61 ~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (430)
.....|+|+|+|+++++...++.|++||..++... .......... ++| +++++.
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~------------------~~~~~~~~~~-ia~-------~~~g~~ 184 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVT------------------TVHPGFKGGK-PAV-------TKDKQR 184 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEE------------------EEEETCCBCB-CEE-------CTTSSE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEE------------------EeeccCCCCc-eeE-------ecCCCc
Confidence 35789999999998888888899999999865321 0111112223 666 778988
Q ss_pred EEEEeCCC--cEEEEeccCCceeeeeecccccccccceEEEEECCC-CcEEEEEcCCeEEEEEcCCCCCcccccccccCC
Q 014125 141 FASTTRDH--PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT-GTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGN 217 (430)
Q Consensus 141 l~~~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~ 217 (430)
|+++..++ .|.+++...+.....+..... .....+.+++++|+ +.++++..++.|+.||...... .......
T Consensus 185 l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~-~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~--~~~~~~~-- 259 (409)
T 3hrp_A 185 VYSIGWEGTHTVYVYMKASGWAPTRIGQLGS-TFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEV--TLIKQLE-- 259 (409)
T ss_dssp EEEEBSSTTCEEEEEEGGGTTCEEEEEECCT-TSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCE--EEEEECC--
T ss_pred EEEEecCCCceEEEEEcCCCceeEEeeeccc-hhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCE--EEEeccc--
Confidence 88888766 788888877654333311000 01125678999994 5555544678899999875421 1110000
Q ss_pred CCCCCcc--eEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccc---------------cCeEEEEEccCCCEE
Q 014125 218 KEGQAGI--MSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE---------------GGVTHVQFSRDGNYL 280 (430)
Q Consensus 218 ~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~---------------~~i~~~~~~~~~~~l 280 (430)
..+.... ...++|+|+++.++++-..++.|+.|+.... ...+.++. .....++++|+|. |
T Consensus 260 ~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-l 336 (409)
T 3hrp_A 260 LSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-F 336 (409)
T ss_dssp CCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-E
T ss_pred ccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-E
Confidence 0111111 2389999976778888888899999997643 22222221 3478999999998 6
Q ss_pred EEEec-CCCeEEEEeCCCCceEEEEeecc--c---------CCccceEEEEEcCCCCEEEEEccCCcEEEEEc
Q 014125 281 YTGGR-KDPYILCWDLRKAVQVVYKLYRS--S---------EHTNQRILFDIEPSGRHLGTGGQDGLVHIYDL 341 (430)
Q Consensus 281 ~~~~~-~d~~i~i~d~~~~~~~~~~~~~~--~---------~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 341 (430)
+++.. .++.|+.|++.++. ........ . ..-.....++++++|.++++-..+++|+.+++
T Consensus 337 yvad~~~~~~I~~~~~~~G~-v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 337 YIVDGFKGYCLRKLDILDGY-VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEEETTTTCEEEEEETTTTE-EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred EEEeCCCCCEEEEEECCCCE-EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 66665 68899999976653 22121110 0 01245789999999888888888888988875
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.8e-12 Score=115.36 Aligned_cols=233 Identities=10% Similarity=0.057 Sum_probs=152.5
Q ss_pred ccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCC--eEEEEEcCCCCCccc
Q 014125 133 ASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNK--SVRVFDVHRPGRDFE 209 (430)
Q Consensus 133 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~--~i~v~d~~~~~~~~~ 209 (430)
+++++++++++...++.|++||+.++.......... ... ++|++++..|+++ .++ .|.+++...... ..
T Consensus 137 a~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~------~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~-~~ 208 (409)
T 3hrp_A 137 AAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFK------GGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA-PT 208 (409)
T ss_dssp EECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCC------BCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC-EE
T ss_pred EEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCC------CCc-eeEecCCCcEEEEecCCCceEEEEEcCCCce-eE
Confidence 337889888888888999999998887665544321 333 8999999988855 434 788888764321 11
Q ss_pred ccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEE----eeccccCe--EEEEEccCCCEEEEE
Q 014125 210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYV----LHGQEGGV--THVQFSRDGNYLYTG 283 (430)
Q Consensus 210 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~----~~~~~~~i--~~~~~~~~~~~l~~~ 283 (430)
...... ......+.+++++|+++.+++ +..++.|+.||..++..... ..++...- ..++|+|++..|+.+
T Consensus 209 ~~g~~~---~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~ 284 (409)
T 3hrp_A 209 RIGQLG---STFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMS 284 (409)
T ss_dssp EEEECC---TTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEE
T ss_pred Eeeecc---chhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEE
Confidence 110000 112345678999995554444 66788999999987653322 22222222 399999976666666
Q ss_pred ecCCCeEEEEeCCCCceEEEEeecc--c---------CCccceEEEEEcCCCCEEEEEc-cCCcEEEEEcCCCCeecccc
Q 014125 284 GRKDPYILCWDLRKAVQVVYKLYRS--S---------EHTNQRILFDIEPSGRHLGTGG-QDGLVHIYDLQTGKWISGFQ 351 (430)
Q Consensus 284 ~~~d~~i~i~d~~~~~~~~~~~~~~--~---------~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~ 351 (430)
...++.|+.|+....... ..... . ..-.....++++|+|+++++-. .+++|+.|++.+++. ..+.
T Consensus 285 d~~~~~I~~~~~~g~~~~--~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~~ 361 (409)
T 3hrp_A 285 DQNLSSVYKITPDGECEW--FCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-STVA 361 (409)
T ss_dssp ETTTTEEEEECTTCCEEE--EEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-EEEE
T ss_pred eCCCCEEEEEecCCCEEE--EEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-EEEe
Confidence 657899999998754211 11110 0 0124578899999999888877 889999999877764 3333
Q ss_pred cc---------------cCCeeEEEEcCCCcEEEEeeCCceeee
Q 014125 352 AA---------------ADTVNGFSFHPFLPMAASSSGHRRFPV 380 (430)
Q Consensus 352 ~~---------------~~~v~~~~~~~~~~~l~s~~~d~~~~v 380 (430)
++ -....+++++|++.++++-..+++|+.
T Consensus 362 g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~ 405 (409)
T 3hrp_A 362 GQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRK 405 (409)
T ss_dssp ECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEE
T ss_pred CCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEE
Confidence 32 235789999999888777765554443
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.57 E-value=8.4e-12 Score=108.54 Aligned_cols=245 Identities=12% Similarity=0.137 Sum_probs=155.6
Q ss_pred CceeEEEECcCCceEEE-------ecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCc
Q 014125 61 NFLKGIKWSPDGSSFLT-------SSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (430)
Q Consensus 61 ~~v~~~~~sp~~~~l~s-------~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (430)
....+++|+++|+++++ +..++.|.+||..+++.... .. .....+...+..+++
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~-~~------------~~~~~~~~~~~~i~~------ 78 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVI-CK------------PEVNGYGGIPAGCQC------ 78 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEE-EC------------CEETTEECCEEEEEE------
T ss_pred CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEE-Ee------------cccCCCCCCCceEEE------
Confidence 34679999999988887 67788999999876543100 00 000012245677777
Q ss_pred cCCC-CceEEEEeCCCcEEEEeccCCceeee-eecccccccccceEEEEECCCCcEEEEEc-C---------------Ce
Q 014125 134 SDPT-SCVFASTTRDHPIHLWDATTGLLRCT-YRAYDAVDEITAAFSVAFNPTGTKIFAGY-N---------------KS 195 (430)
Q Consensus 134 ~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d---------------~~ 195 (430)
+++ ++++++.. .+.|.+||.. ++.... ...... .....+.++++++++.++++.. + +.
T Consensus 79 -~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~-~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~ 154 (314)
T 1pjx_A 79 -DRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEG-RRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGS 154 (314)
T ss_dssp -CSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTS-CBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEE
T ss_pred -ecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCC-ccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCe
Confidence 667 66555544 4469999988 665432 221111 1122578999999998887663 3 45
Q ss_pred EEEEEcCCCCCcccccccccCCCCCCCcceEEEEEc----CCCCceEEEecCCCeEEEEEcC-Cce-----eeEEeeccc
Q 014125 196 VRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFS----PTHTGMLAIGSYSQTSAIYRED-NME-----LLYVLHGQE 265 (430)
Q Consensus 196 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~l~~~~~dg~v~~~d~~-~~~-----~~~~~~~~~ 265 (430)
|..|+.. +. .... ..+......++++ |++..++++...++.|.+||.. +++ ....+..+.
T Consensus 155 l~~~~~~--g~-~~~~-------~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~ 224 (314)
T 1pjx_A 155 IYCFTTD--GQ-MIQV-------DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTH 224 (314)
T ss_dssp EEEECTT--SC-EEEE-------EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCS
T ss_pred EEEECCC--CC-EEEe-------ccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCC
Confidence 6666543 11 1111 0112236788999 8544556666778999999976 343 222333333
Q ss_pred -cCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEE-EEEccCCcEEEEEcCC
Q 014125 266 -GGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHL-GTGGQDGLVHIYDLQT 343 (430)
Q Consensus 266 -~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~vwd~~~ 343 (430)
..+..++++++|..+++.. .++.|.+||..++.... .. ..+...+.+++++|+|+.| ++...++.|..|++..
T Consensus 225 ~~~p~~i~~d~~G~l~v~~~-~~~~i~~~d~~~g~~~~-~~---~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 225 EGGADGMDFDEDNNLLVANW-GSSHIEVFGPDGGQPKM-RI---RCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp SCEEEEEEEBTTCCEEEEEE-TTTEEEEECTTCBSCSE-EE---ECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCCCCceEECCCCCEEEEEc-CCCEEEEEcCCCCcEeE-EE---eCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 5578899999998777776 78899999987543322 11 2234678999999999955 4555668899999874
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=8.8e-13 Score=127.36 Aligned_cols=248 Identities=10% Similarity=0.085 Sum_probs=158.8
Q ss_pred ccCCCceeEEEECcCCceEEE-----ecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecccc
Q 014125 57 SIPNNFLKGIKWSPDGSSFLT-----SSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (430)
Q Consensus 57 ~~h~~~v~~~~~sp~~~~l~s-----~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (430)
.+|...+..++|||||++||. |+....|++||+.+++.... .. .......++|
T Consensus 125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-----------------~~-~~~k~~~~~W---- 182 (693)
T 3iuj_A 125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-----------------PL-KDVKFSGISW---- 182 (693)
T ss_dssp TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-----------------EE-EEEESCCCEE----
T ss_pred CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-----------------cc-CCceeccEEE----
Confidence 456667899999999999984 33346799999998753110 00 0011346677
Q ss_pred CccCCCCceEEEEeCCCc-------------EEEEeccCCce--eeeeecccccccccceEEEEECCCCcEEEE-Ec---
Q 014125 132 SASDPTSCVFASTTRDHP-------------IHLWDATTGLL--RCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GY--- 192 (430)
Q Consensus 132 ~~~~~~~~~l~~~~~dg~-------------i~vwd~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~--- 192 (430)
+ |++.|+.++.+.. |++|++.++.. ...+.... .+.....++.|+|||++|+. ..
T Consensus 183 ---s-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~--~~~~~~~~~~~SpDg~~l~~~~~~~~ 256 (693)
T 3iuj_A 183 ---L-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIP--AQHHRYVGATVTEDDRFLLISAANST 256 (693)
T ss_dssp ---E-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSG--GGCCSEEEEEECTTSCEEEEEEESSS
T ss_pred ---e-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCC--CCCeEEEEEEEcCCCCEEEEEEccCC
Confidence 8 8888888887743 99999887653 22222211 01124668899999998873 22
Q ss_pred -CCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCC---CeEEEEEcCCcee--eEEeecccc
Q 014125 193 -NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS---QTSAIYREDNMEL--LYVLHGQEG 266 (430)
Q Consensus 193 -d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~v~~~d~~~~~~--~~~~~~~~~ 266 (430)
.+.|+++|+..+......+ ..+....... ++++++.+++....+ +.|..+|+.++.. ...+..|..
T Consensus 257 ~~~~i~~~d~~~~~~~~~~l-------~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~ 328 (693)
T 3iuj_A 257 SGNRLYVKDLSQENAPLLTV-------QGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQ 328 (693)
T ss_dssp SCCEEEEEETTSTTCCCEEE-------ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS
T ss_pred CCcEEEEEECCCCCCceEEE-------eCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCC
Confidence 2589999997654322221 1122223333 556566666666554 6799999987654 345555666
Q ss_pred CeEEEEEccCCCEEEEEecCCC--eEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccC----CcEEEEE
Q 014125 267 GVTHVQFSRDGNYLYTGGRKDP--YILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQD----GLVHIYD 340 (430)
Q Consensus 267 ~i~~~~~~~~~~~l~~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~vwd 340 (430)
.+. .|+++++.|+.....++ .|++||+...... .+. ......+..+.++|++..|+....+ +.|+.||
T Consensus 329 ~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~--~l~--~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d 402 (693)
T 3iuj_A 329 QVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKRVR--EVA--LPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFE 402 (693)
T ss_dssp SCE--EEEEETTEEEEEEEETTEEEEEEECTTSCEEE--EEC--CSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEEC
T ss_pred CEE--EEEEECCEEEEEEEECCeeEEEEEECCCCeeE--Eee--cCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEE
Confidence 555 89999998888774555 6889998754221 221 1234556777888888766655444 7899999
Q ss_pred cCCCCe
Q 014125 341 LQTGKW 346 (430)
Q Consensus 341 ~~~~~~ 346 (430)
+.+++.
T Consensus 403 ~~~g~~ 408 (693)
T 3iuj_A 403 PKSGAI 408 (693)
T ss_dssp TTTCCE
T ss_pred CCCCeE
Confidence 987753
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.2e-12 Score=109.93 Aligned_cols=232 Identities=12% Similarity=0.097 Sum_probs=150.9
Q ss_pred CeeeeeeeccccCccCCCCc-eEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEE
Q 014125 120 ESVYDFCWFPHMSASDPTSC-VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVR 197 (430)
Q Consensus 120 ~~v~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~ 197 (430)
.......| +++++ ++++...++.|..|+. +++. ..+..... .+..++++++|+++++. .++.|.
T Consensus 45 ~~~egp~~-------~~~g~~l~~~d~~~~~i~~~~~-~g~~-~~~~~~~~-----~~~gl~~d~dG~l~v~~~~~~~v~ 110 (305)
T 3dr2_A 45 TWSEGPAW-------WEAQRTLVWSDLVGRRVLGWRE-DGTV-DVLLDATA-----FTNGNAVDAQQRLVHCEHGRRAIT 110 (305)
T ss_dssp SSEEEEEE-------EGGGTEEEEEETTTTEEEEEET-TSCE-EEEEESCS-----CEEEEEECTTSCEEEEETTTTEEE
T ss_pred cCccCCeE-------eCCCCEEEEEECCCCEEEEEeC-CCCE-EEEeCCCC-----ccceeeECCCCCEEEEECCCCEEE
Confidence 34556777 56777 6677778899999998 4543 33333322 67899999999987776 457899
Q ss_pred EEEcCCCCCcccccccccCCCCC-CCcceEEEEEcCCCCceEEE----ecC-------------CCeEEEEEcCCceeeE
Q 014125 198 VFDVHRPGRDFEKYSTLKGNKEG-QAGIMSAIAFSPTHTGMLAI----GSY-------------SQTSAIYREDNMELLY 259 (430)
Q Consensus 198 v~d~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~----~~~-------------dg~v~~~d~~~~~~~~ 259 (430)
+|+.. + . ...... ...+ ....+..++++| +++++++ |.. .+.|..||..+++...
T Consensus 111 ~~~~~-g-~-~~~~~~---~~~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~ 183 (305)
T 3dr2_A 111 RSDAD-G-Q-AHLLVG---RYAGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQR 183 (305)
T ss_dssp EECTT-S-C-EEEEEC---EETTEECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEE
T ss_pred EECCC-C-C-EEEEEe---ccCCCccCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEE
Confidence 99875 2 1 111111 0111 123467799999 5567775 432 3568888876666543
Q ss_pred EeeccccCeEEEEEccCCCEEEEEecCC------CeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccC
Q 014125 260 VLHGQEGGVTHVQFSRDGNYLYTGGRKD------PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQD 333 (430)
Q Consensus 260 ~~~~~~~~i~~~~~~~~~~~l~~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 333 (430)
.. .......++|+|+++.|+++. .. +.|.+|++............ .........++++++|++.+ ++.+
T Consensus 184 ~~--~~~~p~gl~~spdg~~lyv~~-~~~~~~~~~~i~~~~~~~~~l~~~~~~~-~~~~~~pdgi~~d~~G~lwv-~~~~ 258 (305)
T 3dr2_A 184 MA--DLDHPNGLAFSPDEQTLYVSQ-TPEQGHGSVEITAFAWRDGALHDRRHFA-SVPDGLPDGFCVDRGGWLWS-SSGT 258 (305)
T ss_dssp EE--EESSEEEEEECTTSSEEEEEE-CCC---CCCEEEEEEEETTEEEEEEEEE-CCSSSCCCSEEECTTSCEEE-CCSS
T ss_pred Ee--cCCCCcceEEcCCCCEEEEEe-cCCcCCCCCEEEEEEecCCCccCCeEEE-ECCCCCCCeEEECCCCCEEE-ecCC
Confidence 33 345678899999999888887 44 78999998765311111111 11233445688999999544 4444
Q ss_pred CcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCceeee
Q 014125 334 GLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPV 380 (430)
Q Consensus 334 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~v 380 (430)
| |.+|+. +++.+..+..+. .+.+++|.|+++.|..++.++.+++
T Consensus 259 g-v~~~~~-~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 259 G-VCVFDS-DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWML 302 (305)
T ss_dssp E-EEEECT-TSCEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEEE
T ss_pred c-EEEECC-CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEEE
Confidence 4 999998 577777776554 5899999999988887776554443
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.55 E-value=2.4e-13 Score=119.43 Aligned_cols=181 Identities=10% Similarity=0.052 Sum_probs=132.4
Q ss_pred ceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCccc-ccccccC-CCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEc
Q 014125 175 AAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFE-KYSTLKG-NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRE 252 (430)
Q Consensus 175 ~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~-~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~ 252 (430)
.+..+++++...+++++....+.+|++........ ....... ....+.. |+.++| ++..|+++ .++.|++||+
T Consensus 39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f---d~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF---HGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE---ETTEEEEE-ESSEEEEEES
T ss_pred cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE---CCCEEEEE-cCCcEEEEEc
Confidence 67889999999999977666888898753210000 0000110 1123445 999999 44577777 8899999999
Q ss_pred CCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEcc
Q 014125 253 DNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQ 332 (430)
Q Consensus 253 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 332 (430)
++.........|..++.++.+.+. .++++. .||.|.+||+.+.... . +...|++++|||+| ++.|..
T Consensus 114 ~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~-~dG~L~v~dl~~~~~~--~------~~~~Vs~v~WSpkG--~~vg~~ 180 (388)
T 1xip_A 114 EELSEFRTVTSFEKPVFQLKNVNN--TLVILN-SVNDLSALDLRTKSTK--Q------LAQNVTSFDVTNSQ--LAVLLK 180 (388)
T ss_dssp SSTTCEEEEEECSSCEEEEEECSS--EEEEEE-TTSEEEEEETTTCCEE--E------EEESEEEEEECSSE--EEEEET
T ss_pred hhhhccCccceeecceeeEEecCC--CEEEEE-CCCCEEEEEccCCccc--c------ccCCceEEEEcCCc--eEEEEc
Confidence 877665566667778888887654 377777 8999999999976532 1 34579999999999 678999
Q ss_pred CCcEEEEEcCCCCe--eccc------c---cccCCeeEEEEcCCCcEEEEee
Q 014125 333 DGLVHIYDLQTGKW--ISGF------Q---AAADTVNGFSFHPFLPMAASSS 373 (430)
Q Consensus 333 dg~i~vwd~~~~~~--~~~~------~---~~~~~v~~~~~~~~~~~l~s~~ 373 (430)
||.+++|+...++. ..++ . +|...|.+|.|.+++.++++-.
T Consensus 181 dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 181 DRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp TSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred CCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 99999999887764 4444 2 3677899999999999888744
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.9e-11 Score=106.69 Aligned_cols=229 Identities=12% Similarity=0.030 Sum_probs=149.4
Q ss_pred eeeeeeccccCccCCC-CceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEE
Q 014125 122 VYDFCWFPHMSASDPT-SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFD 200 (430)
Q Consensus 122 v~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d 200 (430)
....+| +|+ +.++++...++.|..||..+++.. .+... ..+.++++++++++++++. ..|.+||
T Consensus 51 ~egp~~-------~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~------~~v~~i~~~~dg~l~v~~~-~gl~~~d 115 (326)
T 2ghs_A 51 GEGPTF-------DPASGTAWWFNILERELHELHLASGRKT-VHALP------FMGSALAKISDSKQLIASD-DGLFLRD 115 (326)
T ss_dssp EEEEEE-------ETTTTEEEEEEGGGTEEEEEETTTTEEE-EEECS------SCEEEEEEEETTEEEEEET-TEEEEEE
T ss_pred CcCCeE-------eCCCCEEEEEECCCCEEEEEECCCCcEE-EEECC------CcceEEEEeCCCeEEEEEC-CCEEEEE
Confidence 345667 444 456667777889999999887543 23221 2688999999999888764 4599999
Q ss_pred cCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecC------CCeEEEEEcCCceeeEEeeccccCeEEEEEc
Q 014125 201 VHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY------SQTSAIYREDNMELLYVLHGQEGGVTHVQFS 274 (430)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~------dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~ 274 (430)
...+.. ..+.... .......+..++++|+ ++++++... .+.|..++ +++... +..+......++|+
T Consensus 116 ~~~g~~--~~~~~~~--~~~~~~~~~~i~~d~~-G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~~~i~~s 187 (326)
T 2ghs_A 116 TATGVL--TLHAELE--SDLPGNRSNDGRMHPS-GALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIPNSICFS 187 (326)
T ss_dssp TTTCCE--EEEECSS--TTCTTEEEEEEEECTT-SCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSEEEEEEC
T ss_pred CCCCcE--EEEeeCC--CCCCCCCCCCEEECCC-CCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcccCCeEEc
Confidence 865321 1111110 0112246889999995 455554432 25666666 454332 32334457899999
Q ss_pred cCCCEEEEEecCCCeEEEEeCC--CC-ceE-EEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccc
Q 014125 275 RDGNYLYTGGRKDPYILCWDLR--KA-VQV-VYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGF 350 (430)
Q Consensus 275 ~~~~~l~~~~~~d~~i~i~d~~--~~-~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 350 (430)
|+++.|+.+...++.|.+||+. ++ ... ...+.........+..++++++|.+.++...++.|.+||. +++.+..+
T Consensus 188 ~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i 266 (326)
T 2ghs_A 188 PDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARY 266 (326)
T ss_dssp TTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEE
T ss_pred CCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEE
Confidence 9999887776467899999986 43 210 0111111223345678999999988777666788999998 57777777
Q ss_pred ccccCCeeEEEEc-CCCcEEEEeeC
Q 014125 351 QAAADTVNGFSFH-PFLPMAASSSG 374 (430)
Q Consensus 351 ~~~~~~v~~~~~~-~~~~~l~s~~~ 374 (430)
..+...+++++|. |++..|..++.
T Consensus 267 ~~~~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 267 EVPGKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp ECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred ECCCCCcEEEEEecCCCCEEEEEec
Confidence 7666679999998 88876655543
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.53 E-value=7.3e-11 Score=101.73 Aligned_cols=236 Identities=8% Similarity=-0.005 Sum_probs=162.4
Q ss_pred CeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEE
Q 014125 120 ESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRV 198 (430)
Q Consensus 120 ~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v 198 (430)
..+.++++ ++++.++++...++.|.+||.. ++... +.... ....+.++++++++.++++. .++.|..
T Consensus 20 ~~p~~i~~-------d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~---~~~~~~~i~~~~~g~l~v~~~~~~~v~~ 87 (300)
T 2qc5_A 20 SGPYGITS-------SEDGKVWFTQHKANKISSLDQS-GRIKE-FEVPT---PDAKVMCLIVSSLGDIWFTENGANKIGK 87 (300)
T ss_dssp CCEEEEEE-------CTTSCEEEEETTTTEEEEECTT-SCEEE-EECSS---TTCCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred CCcceeeE-------CCCCCEEEEcCCCCeEEEECCC-CceEE-EECCC---CCCcceeEEECCCCCEEEEecCCCeEEE
Confidence 45667777 7788888877778999999987 55433 22221 12367899999999888776 4688999
Q ss_pred EEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeE-EeeccccCeEEEEEccCC
Q 014125 199 FDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLY-VLHGQEGGVTHVQFSRDG 277 (430)
Q Consensus 199 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~-~~~~~~~~i~~~~~~~~~ 277 (430)
||.. +.. ... . .......+..+++.+ ++.++++...++.|..+|.. ++... .+......+..++++++|
T Consensus 88 ~d~~-g~~--~~~---~--~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g 157 (300)
T 2qc5_A 88 LSKK-GGF--TEY---P--LPQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDN 157 (300)
T ss_dssp ECTT-SCE--EEE---E--CSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTS
T ss_pred ECCC-CCe--EEe---c--CCCCCCCCccceECC-CCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCC
Confidence 9876 211 111 1 111224588999998 56677777778899999987 54432 233234578999999999
Q ss_pred CEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecc-cccccCC
Q 014125 278 NYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISG-FQAAADT 356 (430)
Q Consensus 278 ~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~ 356 (430)
+..++.. .++.|..||. ++.... . ........+..++++++|.+.++....+.|.+||. +++.... +..+...
T Consensus 158 ~l~v~~~-~~~~i~~~~~-~g~~~~--~-~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~ 231 (300)
T 2qc5_A 158 ALWFTEN-QNNSIGRITN-TGKLEE--Y-PLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNAR 231 (300)
T ss_dssp SEEEEET-TTTEEEEECT-TCCEEE--E-ECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCC
T ss_pred CEEEEec-CCCeEEEECC-CCcEEE--e-eCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCC
Confidence 8555544 6789999998 433222 1 11234456889999999988777777788999998 5554332 3334557
Q ss_pred eeEEEEcCCCcEEEEeeCCceeeecCC
Q 014125 357 VNGFSFHPFLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 357 v~~~~~~~~~~~l~s~~~d~~~~vw~~ 383 (430)
+.+++++++|.+.++...++.|..++.
T Consensus 232 ~~~i~~d~~g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 232 PHAITAGKNSEIWFTEWGANQIGRITN 258 (300)
T ss_dssp EEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred ceEEEECCCCCEEEeccCCCeEEEECC
Confidence 899999999997777766677777764
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.53 E-value=7.2e-11 Score=101.67 Aligned_cols=232 Identities=9% Similarity=0.023 Sum_probs=150.4
Q ss_pred CCCceeEEEECcC-CceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCC
Q 014125 59 PNNFLKGIKWSPD-GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT 137 (430)
Q Consensus 59 h~~~v~~~~~sp~-~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 137 (430)
+...--+..|+|+ +.++++...++.|..||..++.. ........+.++++ +++
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-------------------~~~~~~~~~~~i~~-------~~d 64 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-------------------QRVTMDAPVSSVAL-------RQS 64 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-------------------EEEECSSCEEEEEE-------BTT
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-------------------EEEeCCCceEEEEE-------CCC
Confidence 3344668999995 55667777789999999876532 11122356788888 668
Q ss_pred CceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cC---------CeEEEEEcCCCCCc
Q 014125 138 SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN---------KSVRVFDVHRPGRD 207 (430)
Q Consensus 138 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d---------~~i~v~d~~~~~~~ 207 (430)
++++++ . ++.|.+||..+++.......... .....+..++++|+|+++++. .. ..-.+|.+...+..
T Consensus 65 G~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~-~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~ 141 (297)
T 3g4e_A 65 GGYVAT-I-GTKFCALNWKEQSAVVLATVDND-KKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHV 141 (297)
T ss_dssp SSEEEE-E-TTEEEEEETTTTEEEEEEECCTT-CSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCE
T ss_pred CCEEEE-E-CCeEEEEECCCCcEEEEEecCCC-CCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCE
Confidence 885554 4 45699999988765443332211 112357889999999977754 21 33456666543221
Q ss_pred ccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEc--CCcee-----eEEeeccccCeEEEEEccCCCEE
Q 014125 208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRE--DNMEL-----LYVLHGQEGGVTHVQFSRDGNYL 280 (430)
Q Consensus 208 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~--~~~~~-----~~~~~~~~~~i~~~~~~~~~~~l 280 (430)
.. . .........++|+|++..++++.+.++.|.+|++ .++.. ...+..+.+....++++++|.+.
T Consensus 142 ~~----~----~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lw 213 (297)
T 3g4e_A 142 KK----Y----FDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLW 213 (297)
T ss_dssp EE----E----EEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEE
T ss_pred EE----E----eeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEE
Confidence 11 0 1112346789999966667777788899999987 34432 22333344567899999999866
Q ss_pred EEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEc-CCCCEEEEEcc
Q 014125 281 YTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIE-PSGRHLGTGGQ 332 (430)
Q Consensus 281 ~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~ 332 (430)
++.. .++.|..||..+++... .+ ..+...+++++|. |+++.|+.++.
T Consensus 214 va~~-~~~~v~~~d~~tG~~~~-~i---~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 214 VACY-NGGRVIRLDPVTGKRLQ-TV---KLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEEE-TTTEEEEECTTTCCEEE-EE---ECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred EEEc-CCCEEEEEcCCCceEEE-EE---ECCCCCceEEEEeCCCCCEEEEEcC
Confidence 6666 78899999998664332 22 2334678999998 88776655543
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=2.4e-12 Score=112.78 Aligned_cols=268 Identities=9% Similarity=-0.064 Sum_probs=170.0
Q ss_pred eEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEe----------CCCcEEE
Q 014125 83 TLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTT----------RDHPIHL 152 (430)
Q Consensus 83 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~----------~dg~i~v 152 (430)
+|.++|..+++....+ ..+. .+ .+.+ +||++.++++. .++.|.+
T Consensus 47 ~vsvID~~t~~v~~~i----------------~vG~-~P--~i~~-------spDg~~lyVan~~~~r~~~G~~~~~Vsv 100 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHS----------------LGAF-LS--LAVA-------GHSGSDFALASTSFARSAKGKRTDYVEV 100 (368)
T ss_dssp EEEEEETTTTEEEEEE----------------EECT-TC--EEEE-------CTTSSCEEEEEEEETTTTSSSEEEEEEE
T ss_pred eEEEEECCCCeEEEEE----------------eCCC-CC--ceEE-------CCCCCEEEEEcccccccccCCCCCEEEE
Confidence 7889999877543221 1111 12 3555 88999999886 4788999
Q ss_pred EeccCCceeeeeecccccc--cccceEEEEECCCCcEEEEE-c--CCeEEE--EEcCCCCCcccccccccCCCCCCCcce
Q 014125 153 WDATTGLLRCTYRAYDAVD--EITAAFSVAFNPTGTKIFAG-Y--NKSVRV--FDVHRPGRDFEKYSTLKGNKEGQAGIM 225 (430)
Q Consensus 153 wd~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~-~--d~~i~v--~d~~~~~~~~~~~~~~~~~~~~~~~~v 225 (430)
||+.+++.+..+....... .......+.++|||++++++ . +..|.+ +|+.+ .. .+.. .+
T Consensus 101 iD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t----v~---~i~v--~~----- 166 (368)
T 1mda_H 101 FDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD----DQ---LTKS--AS----- 166 (368)
T ss_dssp ECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE----EE---EEEC--SS-----
T ss_pred EECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh----ce---EEEC--CC-----
Confidence 9999999999887541100 00134579999999998865 2 467888 88754 11 1100 00
Q ss_pred EEEEEcCCCCceEEEecCCCeEEEEEcCC-----ceeeE----EeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCC
Q 014125 226 SAIAFSPTHTGMLAIGSYSQTSAIYREDN-----MELLY----VLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR 296 (430)
Q Consensus 226 ~~~~~~~~~~~~l~~~~~dg~v~~~d~~~-----~~~~~----~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~ 296 (430)
+..+.|++...+++.+.||.+.+.|+.+ ++... .+.....+. . ++++..++..+ . +.|.+.|+.
T Consensus 167 -~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs-~-~~V~viD~~ 239 (368)
T 1mda_H 167 -CFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAV-A-SSILQGDIP 239 (368)
T ss_dssp -CCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECB-S-SCCEEEECC
T ss_pred -ceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEc-C-CEEEEEECC
Confidence 0123454666777778899988889886 44331 111112333 3 66777777777 6 999999987
Q ss_pred CCceEEEEeecccC--------CccceEEEEEcCCCCEEEEEcc-C--------CcEEEEEcCCCCeecccccccCCeeE
Q 014125 297 KAVQVVYKLYRSSE--------HTNQRILFDIEPSGRHLGTGGQ-D--------GLVHIYDLQTGKWISGFQAAADTVNG 359 (430)
Q Consensus 297 ~~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~-d--------g~i~vwd~~~~~~~~~~~~~~~~v~~ 359 (430)
.............. .......++++|+++.++.+.. + +.+.++|+.+++.+..+.... ...+
T Consensus 240 ~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~g 318 (368)
T 1mda_H 240 AAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDA 318 (368)
T ss_dssp SSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECE
T ss_pred CCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-Ccce
Confidence 54322211111000 0111112679999988876543 2 356699999999999887554 6899
Q ss_pred EEEcCCCcEE-EEeeCCceeeecCCCccccccCCCcEEEEeecccccccccCCCCc
Q 014125 360 FSFHPFLPMA-ASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYASMMENADGING 414 (430)
Q Consensus 360 ~~~~~~~~~l-~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~ 414 (430)
++|+|+++.+ ++.. ..++.|.++|....+.+..+.....
T Consensus 319 i~~s~Dg~~l~va~~----------------~~~~~VsVID~~t~kvv~~I~vg~~ 358 (368)
T 1mda_H 319 IIAAQDGASDNYANS----------------AGTEVLDIYDAASDQDQSSVELDKG 358 (368)
T ss_dssp EEECCSSSCEEEEEE----------------TTTTEEEEEESSSCEEEEECCCCSC
T ss_pred EEECCCCCEEEEEcc----------------CCCCeEEEEECCCCcEEEEEECCCC
Confidence 9999999854 4443 1367888888888888777764433
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.49 E-value=4e-11 Score=106.83 Aligned_cols=250 Identities=13% Similarity=0.109 Sum_probs=153.0
Q ss_pred EEEECcCCceEEEec----------CCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCcc
Q 014125 65 GIKWSPDGSSFLTSS----------EDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS 134 (430)
Q Consensus 65 ~~~~sp~~~~l~s~~----------~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 134 (430)
.+.++|||++|+.+. .++.|.++|..+.+....+.. ...... ...-.|....+
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v----------------~g~~r~-~~g~~P~~~~~ 184 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIEL----------------PDAPRF-LVGTYQWMNAL 184 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEE----------------TTCCCC-CBSCCGGGSEE
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEEC----------------CCcccc-ccCCCcceEEE
Confidence 799999999888876 367899999987754322211 000000 00012444455
Q ss_pred CCCCceEEEEeC--CCcEEEEeccCCceeeeeecccccccccceEEEEECCCC-c-EEEEEcCCeEEEEEcCCCCCcccc
Q 014125 135 DPTSCVFASTTR--DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG-T-KIFAGYNKSVRVFDVHRPGRDFEK 210 (430)
Q Consensus 135 ~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~-~l~~~~d~~i~v~d~~~~~~~~~~ 210 (430)
+|||++++++.. ++.|.+.|+.+++.+..+..... ....|++ . +++.+.||.+.+.+... +.....
T Consensus 185 spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~---------~~~~p~g~~~~v~~~~dG~~~~V~~~~-~~v~~~ 254 (426)
T 3c75_H 185 TPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC---------YHIFPASPTVFYMNCRDGSLARVDFAD-GETKVT 254 (426)
T ss_dssp CTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---------EEEEEEETTEEEEEETTSSEEEEECCT-TCCEEE
T ss_pred cCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc---------eeeccCCCcEEEEEcCCCCEEEEECCC-CcEEEE
Confidence 999999998874 57899999999998888775321 1222322 2 22344666666666622 111100
Q ss_pred cccccCCCCCCCcc-eEEEEEcCCCCceEEEecCCCeEEEEEcCCceee--EEeec----------cccCeEEEEEccCC
Q 014125 211 YSTLKGNKEGQAGI-MSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELL--YVLHG----------QEGGVTHVQFSRDG 277 (430)
Q Consensus 211 ~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~--~~~~~----------~~~~i~~~~~~~~~ 277 (430)
.. ..+.....+ ...+.+.+++..+++ ....+.|.+.|+...... ..+.. .......++++|++
T Consensus 255 ~~---~~~~v~~~p~~~~~~~~~dg~~~~~-~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg 330 (426)
T 3c75_H 255 NT---EVFHTEDELLINHPAFSLRSGRLVW-PTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQS 330 (426)
T ss_dssp EC---CCCSCTTSCBCSCCEECTTTCEEEE-EBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGG
T ss_pred ee---eeeccCCCceeeEeeecCCCCEEEE-EeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCC
Confidence 00 000000111 123467885554444 456789999998754321 11110 11222347899999
Q ss_pred CEEEEEecC---------CCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCC-EEEEEc-cCCcEEEEEcCCCCe
Q 014125 278 NYLYTGGRK---------DPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGR-HLGTGG-QDGLVHIYDLQTGKW 346 (430)
Q Consensus 278 ~~l~~~~~~---------d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-~dg~i~vwd~~~~~~ 346 (430)
+.+++.... ++.|.++|+.+.+... .+. -......+.|+|+|+ ++++.. .++.|.|+|+.+++.
T Consensus 331 ~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~-~I~----vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kv 405 (426)
T 3c75_H 331 DRIYLLVDQRDEWKHKAASRFVVVLNAETGERIN-KIE----LGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEE 405 (426)
T ss_dssp TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEE-EEE----EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred CEEEEEecccccccccCCCCEEEEEECCCCeEEE-EEE----CCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCE
Confidence 988887511 3579999999885443 321 122477899999998 888887 589999999999999
Q ss_pred eccc
Q 014125 347 ISGF 350 (430)
Q Consensus 347 ~~~~ 350 (430)
+.++
T Consensus 406 v~tI 409 (426)
T 3c75_H 406 LRSV 409 (426)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9886
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.49 E-value=6.3e-13 Score=116.75 Aligned_cols=181 Identities=9% Similarity=-0.007 Sum_probs=125.6
Q ss_pred eeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceee-----eeecccccccccceEEEEECCCCcEEEEEcCCe
Q 014125 121 SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRC-----TYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKS 195 (430)
Q Consensus 121 ~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~ 195 (430)
.+..+++ ++...++++|+.++ +.+|++....... .+.......... |+.++| ++.+|+++.++.
T Consensus 39 ~~nlLai-------s~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~~~~~ 107 (388)
T 1xip_A 39 SLQNLDI-------SNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVSTRNA 107 (388)
T ss_dssp CCBCEEE-------ETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEEESSE
T ss_pred cccEEEE-------cCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEEcCCc
Confidence 5677777 66788999999987 6679876433100 011100112223 889999 889999779999
Q ss_pred EEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEcc
Q 014125 196 VRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSR 275 (430)
Q Consensus 196 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~ 275 (430)
|++||++...... . ...+...+.++.+.+. .+++++.||.|.+||+.++.... +...|++++|+|
T Consensus 108 l~v~dv~sl~~~~-~-------~~~~~~~v~~i~~~~p---~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSp 172 (388)
T 1xip_A 108 LYSLDLEELSEFR-T-------VTSFEKPVFQLKNVNN---TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTN 172 (388)
T ss_dssp EEEEESSSTTCEE-E-------EEECSSCEEEEEECSS---EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECS
T ss_pred EEEEEchhhhccC-c-------cceeecceeeEEecCC---CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcC
Confidence 9999997643211 1 1233345777777652 28888999999999999776543 456899999999
Q ss_pred CCCEEEEEecCCCeEEEEeCCCCceE-EEEee------cccCCccceEEEEEcCCCCEEEEE
Q 014125 276 DGNYLYTGGRKDPYILCWDLRKAVQV-VYKLY------RSSEHTNQRILFDIEPSGRHLGTG 330 (430)
Q Consensus 276 ~~~~l~~~~~~d~~i~i~d~~~~~~~-~~~~~------~~~~~~~~v~~~~~~~~~~~l~~~ 330 (430)
+| ++++. .||.+++|+....... ...+. ...+|...|.++.|.+++.++++=
T Consensus 173 kG--~~vg~-~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 173 SQ--LAVLL-KDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp SE--EEEEE-TTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred Cc--eEEEE-cCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 99 66777 8999999988776421 22221 111367889999999999888763
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=2.2e-10 Score=99.99 Aligned_cols=225 Identities=15% Similarity=0.131 Sum_probs=142.2
Q ss_pred ceeEEEECcC-CceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCce
Q 014125 62 FLKGIKWSPD-GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV 140 (430)
Q Consensus 62 ~v~~~~~sp~-~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (430)
...+..|+|+ +.++++...++.|.+||..++... .......+.+++| ++++++
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-------------------~~~~~~~v~~i~~-------~~dg~l 103 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-------------------VHALPFMGSALAK-------ISDSKQ 103 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-------------------EEECSSCEEEEEE-------EETTEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-------------------EEECCCcceEEEE-------eCCCeE
Confidence 3567899997 456667777889999998765210 1112346888888 567877
Q ss_pred EEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcC-------CeEEEEEcCCCCCccccccc
Q 014125 141 FASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYN-------KSVRVFDVHRPGRDFEKYST 213 (430)
Q Consensus 141 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d-------~~i~v~d~~~~~~~~~~~~~ 213 (430)
+++. .++ |.+||..+++.......... .....+..++++|+|+++++..+ +.|..++ . +. ...
T Consensus 104 ~v~~-~~g-l~~~d~~~g~~~~~~~~~~~-~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~-g~-~~~--- 173 (326)
T 2ghs_A 104 LIAS-DDG-LFLRDTATGVLTLHAELESD-LPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--K-GK-VTK--- 173 (326)
T ss_dssp EEEE-TTE-EEEEETTTCCEEEEECSSTT-CTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--T-TE-EEE---
T ss_pred EEEE-CCC-EEEEECCCCcEEEEeeCCCC-CCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--C-Cc-EEE---
Confidence 6654 444 99999988875433222111 11236789999999997775431 3455554 2 21 111
Q ss_pred ccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcC--Cc-ee-----eEEeeccccCeEEEEEccCCCEEEEEec
Q 014125 214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED--NM-EL-----LYVLHGQEGGVTHVQFSRDGNYLYTGGR 285 (430)
Q Consensus 214 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~--~~-~~-----~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 285 (430)
+. ........++|+|++..++++.+.++.|.+||+. ++ .. ...+.........++++++|.+.++..
T Consensus 174 ~~----~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~- 248 (326)
T 2ghs_A 174 LF----ADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARW- 248 (326)
T ss_dssp EE----EEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEE-
T ss_pred ee----CCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEe-
Confidence 10 1112467899999665566666778999999986 55 31 222222335578899999998776665
Q ss_pred CCCeEEEEeCCCCceEEEEeecccCCccceEEEEEc-CCCCEEEEEcc
Q 014125 286 KDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIE-PSGRHLGTGGQ 332 (430)
Q Consensus 286 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~ 332 (430)
.++.|..||.. +.. ...+ ..+...+.+++|+ |+++.|+.++.
T Consensus 249 ~~~~v~~~d~~-g~~-~~~i---~~~~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 249 GEGAVDRYDTD-GNH-IARY---EVPGKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp TTTEEEEECTT-CCE-EEEE---ECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred CCCEEEEECCC-CCE-EEEE---ECCCCCcEEEEEecCCCCEEEEEec
Confidence 67899999984 322 2222 2334568999998 88877655543
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.43 E-value=5.2e-11 Score=104.82 Aligned_cols=268 Identities=8% Similarity=-0.000 Sum_probs=163.0
Q ss_pred eeeeeeeccccCccCCCCceEEEEeC--CCcEEEEeccCCceeeeeecc--cccccccceEEEEECCCCcEEEEE-c---
Q 014125 121 SVYDFCWFPHMSASDPTSCVFASTTR--DHPIHLWDATTGLLRCTYRAY--DAVDEITAAFSVAFNPTGTKIFAG-Y--- 192 (430)
Q Consensus 121 ~v~~~~~~~~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~-~--- 192 (430)
....+++ +++|+++++... ++.++||.+.+++. ..+... ....+...+..++++++++++++. .
T Consensus 18 ~p~~va~-------~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~ 89 (343)
T 2qe8_A 18 APGNITL-------TPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQS 89 (343)
T ss_dssp CEEEEEE-------CTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHH
T ss_pred CcceEEE-------CCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCc
Confidence 4556666 788998888642 34356666555543 222211 111234478899999999877765 2
Q ss_pred --CCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEec---CCCeEEEEEcCCceeeEEeeccc--
Q 014125 193 --NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS---YSQTSAIYREDNMELLYVLHGQE-- 265 (430)
Q Consensus 193 --d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~v~~~d~~~~~~~~~~~~~~-- 265 (430)
++.|.+||+.++.. ...+ .+......+...+..++++|+++..+++.. .++.|.+||+.+++....+..|.
T Consensus 90 ~~~~~i~~~d~~tg~~-~~~~-~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~ 167 (343)
T 2qe8_A 90 KSVPKLVAWDTLNNQL-SRVI-YLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGI 167 (343)
T ss_dssp TSCCEEEEEETTTTEE-EEEE-ECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTT
T ss_pred CCCCeEEEEECCCCeE-EEEE-ECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcc
Confidence 57999999876421 1111 111111123345688999985566666665 67899999998877655543321
Q ss_pred ---------------------------cCeEEEEEccCCCEEEEEecCCCeEEEEeCC---CCc----eEEEEeecccCC
Q 014125 266 ---------------------------GGVTHVQFSRDGNYLYTGGRKDPYILCWDLR---KAV----QVVYKLYRSSEH 311 (430)
Q Consensus 266 ---------------------------~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~---~~~----~~~~~~~~~~~~ 311 (430)
..+..|+|+|+|+.|+++......+..++.. ... .....+ ...++
T Consensus 168 ~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~g~ 246 (343)
T 2qe8_A 168 APEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKI-ERYSE 246 (343)
T ss_dssp SCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTC-EEEEE
T ss_pred cccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcce-Eeccc
Confidence 2358899999999999888333456555532 110 000000 00012
Q ss_pred ccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccccc-ccCCeeEEEEcCCCcEEEEeeCCceeeecCCCcccccc
Q 014125 312 TNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQA-AADTVNGFSFHPFLPMAASSSGHRRFPVDDFEDLHLSG 390 (430)
Q Consensus 312 ~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~l~~~~ 390 (430)
......++++++|.++++...++.|.+||..+++....... +...+.+++|.+++.++++.+..+.+.++.... --
T Consensus 247 ~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f~~~~---~~ 323 (343)
T 2qe8_A 247 KPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPLNAGE---NI 323 (343)
T ss_dssp CCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGGBTTC---CC
T ss_pred CCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccccccccccCC---Cc
Confidence 22445689999999999999999999999855654322221 244689999999999888887666555543220 01
Q ss_pred CCCcEEEEeecc
Q 014125 391 DENCVSVWSFLY 402 (430)
Q Consensus 391 ~d~~i~~w~~~~ 402 (430)
.+...+||.+..
T Consensus 324 ~~~~~~i~~~~~ 335 (343)
T 2qe8_A 324 SAPPYYIFRLKP 335 (343)
T ss_dssp CCSCEEEEEECC
T ss_pred CcCCeEEEEEEC
Confidence 223357776653
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=2.1e-11 Score=117.73 Aligned_cols=239 Identities=13% Similarity=0.071 Sum_probs=148.6
Q ss_pred CeeeeeeeccccCccCCCCceEEEE-----eCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcC
Q 014125 120 ESVYDFCWFPHMSASDPTSCVFAST-----TRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYN 193 (430)
Q Consensus 120 ~~v~~~~~~~~~~~~~~~~~~l~~~-----~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d 193 (430)
..+..++| ||||++||.+ +....|++||+.+++.+.... ... ....++|+ |++.|+ +..+
T Consensus 129 ~~l~~~~~-------SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~-----k~~~~~Ws-Dg~~l~y~~~~ 194 (693)
T 3iuj_A 129 TALDQLSF-------SRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDV-----KFSGISWL-GNEGFFYSSYD 194 (693)
T ss_dssp CEEEEEEE-------CTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEE-----ESCCCEEE-TTTEEEEEESS
T ss_pred EEEEEEEE-------CCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCc-----eeccEEEe-CCCEEEEEEec
Confidence 36777788 8899988843 233579999999998654311 110 13478999 998887 5555
Q ss_pred C-------------eEEEEEcCCCCCcccccccccCCCCC-CCcceEEEEEcCCCCceEEEecC---CCeEEEEEcCCce
Q 014125 194 K-------------SVRVFDVHRPGRDFEKYSTLKGNKEG-QAGIMSAIAFSPTHTGMLAIGSY---SQTSAIYREDNME 256 (430)
Q Consensus 194 ~-------------~i~v~d~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~---dg~v~~~d~~~~~ 256 (430)
. .|++|++.++......+ ..... +...+..+.|+|++..++++... ...|+++|+.++.
T Consensus 195 ~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v----~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~ 270 (693)
T 3iuj_A 195 KPDGSELSARTDQHKVYFHRLGTAQEDDRLV----FGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQEN 270 (693)
T ss_dssp CCC-------CCCCEEEEEETTSCGGGCEEE----ESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTT
T ss_pred CcccccccccCCCcEEEEEECCCCcccceEE----EecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCC
Confidence 3 49999987643211111 11122 33457789999966655555442 3589999998763
Q ss_pred -eeEEeeccccCeEEEEEccCCCEEEEEecCC---CeEEEEeCCCCceE-EEEeecccCCccceEEEEEcCCCCEEEEEc
Q 014125 257 -LLYVLHGQEGGVTHVQFSRDGNYLYTGGRKD---PYILCWDLRKAVQV-VYKLYRSSEHTNQRILFDIEPSGRHLGTGG 331 (430)
Q Consensus 257 -~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d---~~i~i~d~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 331 (430)
....+..+....... |+++|..|+..+..+ +.|..+|+.++... ...+ ..+...+. .|++++++|+...
T Consensus 271 ~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l---~~~~~~~~--~~s~~g~~lv~~~ 344 (693)
T 3iuj_A 271 APLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDL---IPERQQVL--TVHSGSGYLFAEY 344 (693)
T ss_dssp CCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEE---ECCCSSCE--EEEEETTEEEEEE
T ss_pred CceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEE---ecCCCCEE--EEEEECCEEEEEE
Confidence 344555555555554 677777766655243 68999999876430 1122 12333343 8889998877666
Q ss_pred cCC---cEEEEEcCCCCeecccc-cccCCeeEEEEcCCCcEEEEeeCC----ceeeecCC
Q 014125 332 QDG---LVHIYDLQTGKWISGFQ-AAADTVNGFSFHPFLPMAASSSGH----RRFPVDDF 383 (430)
Q Consensus 332 ~dg---~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d----~~~~vw~~ 383 (430)
.++ .|++|++..+. ...+. ...+.+..+.++|++..|+....+ +.+..++.
T Consensus 345 ~~~g~~~l~~~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~ 403 (693)
T 3iuj_A 345 MVDATARVEQFDYEGKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEP 403 (693)
T ss_dssp EETTEEEEEEECTTSCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECT
T ss_pred EECCeeEEEEEECCCCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEEC
Confidence 543 68999988543 34433 234567788888888866655443 66777654
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.37 E-value=3e-10 Score=98.17 Aligned_cols=236 Identities=11% Similarity=0.099 Sum_probs=143.9
Q ss_pred cccCCCceeEEEECcCCc-eEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCcc
Q 014125 56 SSIPNNFLKGIKWSPDGS-SFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS 134 (430)
Q Consensus 56 ~~~h~~~v~~~~~sp~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 134 (430)
+...........|+|+|+ ++++...++.|..|+.. +.. .........+..+++
T Consensus 40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~------------------~~~~~~~~~~~gl~~------- 93 (305)
T 3dr2_A 40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTV------------------DVLLDATAFTNGNAV------- 93 (305)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCE------------------EEEEESCSCEEEEEE-------
T ss_pred EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCE------------------EEEeCCCCccceeeE-------
Confidence 344455678899999998 66777788999999874 311 111123345777777
Q ss_pred CCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE----Ec--------------CCeE
Q 014125 135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA----GY--------------NKSV 196 (430)
Q Consensus 135 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~----~~--------------d~~i 196 (430)
+++|+++++...++.|.+|+.. ++.......... .....+..++++|+|.++++ +. .+.|
T Consensus 94 d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~-~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v 171 (305)
T 3dr2_A 94 DAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAG-KRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSV 171 (305)
T ss_dssp CTTSCEEEEETTTTEEEEECTT-SCEEEEECEETT-EECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEE
T ss_pred CCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCC-CccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeE
Confidence 7789877666666789999986 553322221111 11224678999999998875 21 2456
Q ss_pred EEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCC------CeEEEEEcCCceee--EEe-eccccC
Q 014125 197 RVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS------QTSAIYREDNMELL--YVL-HGQEGG 267 (430)
Q Consensus 197 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~v~~~d~~~~~~~--~~~-~~~~~~ 267 (430)
..+|...+.. .... .......++|+|++ ..|+++... +.|.+|++...... ..+ ....+.
T Consensus 172 ~~~d~~~g~~--~~~~--------~~~~p~gl~~spdg-~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~ 240 (305)
T 3dr2_A 172 YRLPPDGSPL--QRMA--------DLDHPNGLAFSPDE-QTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGL 240 (305)
T ss_dssp EEECSSSCCC--EEEE--------EESSEEEEEECTTS-SEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSC
T ss_pred EEEcCCCCcE--EEEe--------cCCCCcceEEcCCC-CEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCC
Confidence 6666543211 1110 12346789999954 445554443 78999998754411 111 112344
Q ss_pred eEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEE
Q 014125 268 VTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYD 340 (430)
Q Consensus 268 i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd 340 (430)
...++++++|+ |.+++ .+ .|.+|+.... . ...+.. . ..+..++|+|+++.|+.++.++ ++.++
T Consensus 241 pdgi~~d~~G~-lwv~~-~~-gv~~~~~~g~-~-~~~~~~---~-~~~~~~~f~~d~~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 241 PDGFCVDRGGW-LWSSS-GT-GVCVFDSDGQ-L-LGHIPT---P-GTASNCTFDQAQQRLFITGGPC-LWMLP 303 (305)
T ss_dssp CCSEEECTTSC-EEECC-SS-EEEEECTTSC-E-EEEEEC---S-SCCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred CCeEEECCCCC-EEEec-CC-cEEEECCCCC-E-EEEEEC---C-CceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence 56789999998 55554 44 4999998543 2 222221 1 2477899999998888877764 44333
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.35 E-value=1.1e-10 Score=102.21 Aligned_cols=259 Identities=9% Similarity=-0.024 Sum_probs=151.1
Q ss_pred EEEECcCCceEEEec----------CCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCcc
Q 014125 65 GIKWSPDGSSFLTSS----------EDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS 134 (430)
Q Consensus 65 ~~~~sp~~~~l~s~~----------~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 134 (430)
.+.++|||++|+++. .++.|.+||+.+.+....+.... ....+ .--.|....+
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~---------------~~~~~--~g~~P~~ia~ 131 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPD---------------APRFS--VGPRVHIIGN 131 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETT---------------SCSCC--BSCCTTSEEE
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCC---------------ccccc--cCCCcceEEE
Confidence 799999999998886 36889999999875543322110 00000 0012444555
Q ss_pred CCCCceEEEEeC--CCcEEE--EeccCCceeeeeecccccccccceEEEEECCCCc--EEEEEcCCeEEEEEcCCCCCc-
Q 014125 135 DPTSCVFASTTR--DHPIHL--WDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGT--KIFAGYNKSVRVFDVHRPGRD- 207 (430)
Q Consensus 135 ~~~~~~l~~~~~--dg~i~v--wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~d~~i~v~d~~~~~~~- 207 (430)
+|||++++++.. +..+.+ +|+.+ +..+.... . +.+.|++. +++.+.|+.+.+.++......
T Consensus 132 SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~------~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~ 199 (368)
T 1mda_H 132 CASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSAS------C---FHIHPGAAATHYLGSCPASLAASDLAAAPAAA 199 (368)
T ss_dssp CTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSS------C---CCCEEEETTEEECCCCTTSCEEEECCSSCCCC
T ss_pred cCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCC------c---eEEccCCCeEEEEEcCCCCEEEEECccccccC
Confidence 999999999875 356888 99877 34443211 1 11224442 333446777777787651110
Q ss_pred ccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCce--eeEEeec----------cccCeEEEEEcc
Q 014125 208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME--LLYVLHG----------QEGGVTHVQFSR 275 (430)
Q Consensus 208 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~--~~~~~~~----------~~~~i~~~~~~~ 275 (430)
.+..........-...+. . .++++.++ ..+. +.|.+.|..+.. .+..+.. .......++++|
T Consensus 200 ~~v~~~~t~~i~vg~~P~---~-~~~~~~~~-~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~ 273 (368)
T 1mda_H 200 GIVGAQCTGAQNCSSQAA---Q-ANYPGMLV-WAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLK 273 (368)
T ss_dssp EECCCCSCTTSCBCSCCE---E-ETTTTEEE-ECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEET
T ss_pred CeEEEEeeeeeeCCCCcc---c-cccCCEEE-EEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcC
Confidence 000000000011112233 3 55455444 4444 999999986532 2222211 111222378999
Q ss_pred CCCEEEEEec-C-------CCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCE-EEEEc-cCCcEEEEEcCCCC
Q 014125 276 DGNYLYTGGR-K-------DPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRH-LGTGG-QDGLVHIYDLQTGK 345 (430)
Q Consensus 276 ~~~~l~~~~~-~-------d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~-~dg~i~vwd~~~~~ 345 (430)
+++.++++.. . ++.+.++|+.+.+... .+. -......++|+|+|++ +++.. .++.|.++|+.+++
T Consensus 274 dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~-~i~----vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~k 348 (368)
T 1mda_H 274 NTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSG-PIS----NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ 348 (368)
T ss_dssp TTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEE-CCE----EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred CCCEEEEEeccccCcccccCCCEEEEECCCCeEEE-EEE----CCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCc
Confidence 9999998762 1 2356699999875432 221 1225778999999974 55555 58999999999999
Q ss_pred eecccccccCCeeEEEEcC
Q 014125 346 WISGFQAAADTVNGFSFHP 364 (430)
Q Consensus 346 ~~~~~~~~~~~v~~~~~~~ 364 (430)
.+..+.... ...++++.+
T Consensus 349 vv~~I~vg~-~P~~i~~~~ 366 (368)
T 1mda_H 349 DQSSVELDK-GPESLSVQN 366 (368)
T ss_dssp EEEECCCCS-CCCEEECCC
T ss_pred EEEEEECCC-CCCEEEeec
Confidence 999887554 345666654
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.31 E-value=8.1e-10 Score=106.04 Aligned_cols=294 Identities=11% Similarity=0.060 Sum_probs=169.0
Q ss_pred CceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEE
Q 014125 72 GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIH 151 (430)
Q Consensus 72 ~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 151 (430)
+..|+.++.++.|.-+|..+++..-........ ...........-..+. -.+..+++++.|+.|.
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~------~~~~~~~~~~~~~~~~---------~~~g~v~v~~~dg~l~ 134 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDR------HRAGEACCDAVNRGVA---------VWKGKVYVGVLDGRLE 134 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCG------GGGGGCTTCSCCCCCE---------EETTEEEEECTTSEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCc------cccccccccCCCCccE---------EECCEEEEEccCCEEE
Confidence 556777788889999999988764333211100 0000000000000011 1355788899999999
Q ss_pred EEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE------cCCeEEEEEcCCCCCcccccccccCCC-------
Q 014125 152 LWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG------YNKSVRVFDVHRPGRDFEKYSTLKGNK------- 218 (430)
Q Consensus 152 vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~------~d~~i~v~d~~~~~~~~~~~~~~~~~~------- 218 (430)
.+|..+|+.+..+...........+.+--.-.++..++.+ .++.|+.||..++...+..........
T Consensus 135 AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~ 214 (689)
T 1yiq_A 135 AIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKG 214 (689)
T ss_dssp EEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHH
T ss_pred EEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccccccccc
Confidence 9999999998877653110000011100000155555532 268899999988655443221100000
Q ss_pred --------C--------CCCcceEEEEEcCCCCceEEEecCCCe-------------------EEEEEcCCceeeEEeec
Q 014125 219 --------E--------GQAGIMSAIAFSPTHTGMLAIGSYSQT-------------------SAIYREDNMELLYVLHG 263 (430)
Q Consensus 219 --------~--------~~~~~v~~~~~~~~~~~~l~~~~~dg~-------------------v~~~d~~~~~~~~~~~~ 263 (430)
. +.......++++| ...++++++.++. |..+|.++++.+..++.
T Consensus 215 ~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~ 293 (689)
T 1yiq_A 215 MEIAAKTWFGDAYVEQGGGGTAWDSFAYDP-ELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQT 293 (689)
T ss_dssp HHHHHTTCCSSTHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEES
T ss_pred ccccccccCCceeeecCCCCccccceeEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeec
Confidence 0 1111123578888 5567888887764 99999999999887764
Q ss_pred --cc-------cCeEEEEEccCCC---EEEEEecCCCeEEEEeCCCCceEEEEeeccc----------------------
Q 014125 264 --QE-------GGVTHVQFSRDGN---YLYTGGRKDPYILCWDLRKAVQVVYKLYRSS---------------------- 309 (430)
Q Consensus 264 --~~-------~~i~~~~~~~~~~---~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~---------------------- 309 (430)
|. .+........+|+ .++.++ .+|.++++|.++++..........
T Consensus 294 ~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~-~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~ 372 (689)
T 1yiq_A 294 TPGDAWDYTATQHMILAELPIDGKPRKVLMQAP-KNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAY 372 (689)
T ss_dssp STTCCSCCCCCSCEEEEEEEETTEEEEEEEECC-TTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCT
T ss_pred CCcccccccCCCCcEEEeeccCCcEEEEEEEEC-CCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccc
Confidence 21 1122222223554 677777 899999999999865432211100
Q ss_pred --CCcc-----------ceEEEEEcCCCCEEEEEcc--------------------------------------------
Q 014125 310 --EHTN-----------QRILFDIEPSGRHLGTGGQ-------------------------------------------- 332 (430)
Q Consensus 310 --~~~~-----------~v~~~~~~~~~~~l~~~~~-------------------------------------------- 332 (430)
.... .-..++++|+..++++...
T Consensus 373 ~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~ 452 (689)
T 1yiq_A 373 WKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKS 452 (689)
T ss_dssp TTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTT
T ss_pred cCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCC
Confidence 0000 0112688888777776532
Q ss_pred -CCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCC
Q 014125 333 -DGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 333 -dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~ 383 (430)
+|.|+.||+.+++.+..++.+. ++..-.+...+.+++.++.|+.+++||.
T Consensus 453 ~~g~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~ 503 (689)
T 1yiq_A 453 WSGKLIAWDPVKQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAA 503 (689)
T ss_dssp CEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred cceeEEEEECCCCCeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEEC
Confidence 3779999999999988877543 3344455667778888877666666654
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.31 E-value=3.2e-09 Score=94.75 Aligned_cols=272 Identities=7% Similarity=0.035 Sum_probs=155.9
Q ss_pred CCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCee-eeeeeccccCccCCCCceEEEEeCCCc
Q 014125 71 DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESV-YDFCWFPHMSASDPTSCVFASTTRDHP 149 (430)
Q Consensus 71 ~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~l~~~~~dg~ 149 (430)
++..|++++.++.|..+|..+++..-........ . ........+ ..+. .++..++.++.++.
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~----~----~~~~~~~~~~~~~~---------~~~~~v~v~~~~g~ 114 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKD----G----WFSKEPALLSGGVT---------VSGGHVYIGSEKAQ 114 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----------CCSCCCCCEEEEEE---------EETTEEEEEETTSE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCcccc----c----cccccCcccccCce---------EeCCEEEEEcCCCE
Confidence 3567888888999999999887654322211000 0 000000111 1111 13557888889999
Q ss_pred EEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccC-CCCCCCcceEEE
Q 014125 150 IHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKG-NKEGQAGIMSAI 228 (430)
Q Consensus 150 i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~-~~~~~~~~v~~~ 228 (430)
|..+|..+|+.+.......... ..... .++..++.+.++.|..+|..++...+........ ...... ..
T Consensus 115 l~a~d~~tG~~~W~~~~~~~~~-----~~p~~-~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~----~~ 184 (376)
T 3q7m_A 115 VYALNTSDGTVAWQTKVAGEAL-----SRPVV-SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGES----AP 184 (376)
T ss_dssp EEEEETTTCCEEEEEECSSCCC-----SCCEE-ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCC----CC
T ss_pred EEEEECCCCCEEEEEeCCCceE-----cCCEE-ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCC----Cc
Confidence 9999999999887766543211 11112 2455555568899999998775433322110000 000001 11
Q ss_pred EEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccC----eE---EEEEcc--CCCEEEEEecCCCeEEEEeCCCCc
Q 014125 229 AFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGG----VT---HVQFSR--DGNYLYTGGRKDPYILCWDLRKAV 299 (430)
Q Consensus 229 ~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~----i~---~~~~~~--~~~~l~~~~~~d~~i~i~d~~~~~ 299 (430)
... ...++++..++.|..+|..+++.+......... +. .+.-.| .+..+++++ .++.+..+|..+++
T Consensus 185 ~~~---~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~-~~g~l~~~d~~tG~ 260 (376)
T 3q7m_A 185 TTA---FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALA-YNGNLTALDLRSGQ 260 (376)
T ss_dssp EEE---TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEEC-TTSCEEEEETTTCC
T ss_pred EEE---CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEe-cCcEEEEEECCCCc
Confidence 121 236778888999999999999887766522110 00 011111 345677777 89999999999886
Q ss_pred eEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccc-cCCeeEEEEcCCCcEEEEeeCCcee
Q 014125 300 QVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAA-ADTVNGFSFHPFLPMAASSSGHRRF 378 (430)
Q Consensus 300 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~d~~~ 378 (430)
...... ......+.. ++..|+.++.++.|..+|..+++.+...... ...+..... .+..|+.++.+|.+
T Consensus 261 ~~w~~~------~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l 330 (376)
T 3q7m_A 261 IMWKRE------LGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYL 330 (376)
T ss_dssp EEEEEC------CCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEE
T ss_pred EEeecc------CCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeE
Confidence 543221 112333433 3667888888999999999999987665421 222222222 24566667666666
Q ss_pred eecCC
Q 014125 379 PVDDF 383 (430)
Q Consensus 379 ~vw~~ 383 (430)
.++|.
T Consensus 331 ~~~d~ 335 (376)
T 3q7m_A 331 HWINV 335 (376)
T ss_dssp EEEET
T ss_pred EEEEC
Confidence 66654
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.30 E-value=1.1e-08 Score=86.45 Aligned_cols=221 Identities=12% Similarity=0.061 Sum_probs=138.3
Q ss_pred eeeeeeeccccCccCCCC-ceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE-cCCeEE
Q 014125 121 SVYDFCWFPHMSASDPTS-CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVR 197 (430)
Q Consensus 121 ~v~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~ 197 (430)
....++| ++++ .++++-...+.|..+++..+......... ......+++++++..|+ +. ..+.|.
T Consensus 37 ~~~gi~~-------d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~-----~~~p~~ia~d~~~~~lyv~d~~~~~I~ 104 (267)
T 1npe_A 37 VIIGLAF-------DCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQD-----LGSPEGIALDHLGRTIFWTDSQLDRIE 104 (267)
T ss_dssp EEEEEEE-------ETTTTEEEEEETTTTEEEEEESSSCCCEEEECTT-----CCCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred cEEEEEE-------ecCCCEEEEEECCCCEEEEEecCCCCcEEEEECC-----CCCccEEEEEecCCeEEEEECCCCEEE
Confidence 4567777 5544 44555556789999998766543332211 12567899999766665 44 568899
Q ss_pred EEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecC--CCeEEEEEcCCceeeEEeeccccCeEEEEEcc
Q 014125 198 VFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY--SQTSAIYREDNMELLYVLHGQEGGVTHVQFSR 275 (430)
Q Consensus 198 v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~ 275 (430)
+++++.... .. +. .........++++|+++.++++... .+.|..+++..................++++|
T Consensus 105 ~~~~~g~~~--~~---~~---~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~ 176 (267)
T 1npe_A 105 VAKMDGTQR--RV---LF---DTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDA 176 (267)
T ss_dssp EEETTSCSC--EE---EE---CSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEET
T ss_pred EEEcCCCCE--EE---EE---ECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcC
Confidence 999864211 11 11 1111346899999965655555543 47888888764332212222234578999999
Q ss_pred CCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccC
Q 014125 276 DGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAAD 355 (430)
Q Consensus 276 ~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 355 (430)
++..|+.+....+.|..+|....... .... .......++.. .+.++++....+.|.++|..+++.+..+.....
T Consensus 177 ~~~~lyv~d~~~~~I~~~~~~g~~~~--~~~~---~~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~ 250 (267)
T 1npe_A 177 FSSQLCWVDAGTHRAECLNPAQPGRR--KVLE---GLQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQ 250 (267)
T ss_dssp TTTEEEEEETTTTEEEEEETTEEEEE--EEEE---CCCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSC
T ss_pred CCCEEEEEECCCCEEEEEecCCCceE--EEec---CCCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEccccc
Confidence 98888888767789999999754221 1211 12233456654 344444444568999999999998887764432
Q ss_pred -CeeEEEEcCCCc
Q 014125 356 -TVNGFSFHPFLP 367 (430)
Q Consensus 356 -~v~~~~~~~~~~ 367 (430)
...++++.|++.
T Consensus 251 ~~p~gi~~~~~~~ 263 (267)
T 1npe_A 251 TRLYGITIALSQC 263 (267)
T ss_dssp CCCCCEEEECSCC
T ss_pred cccceeeecCccC
Confidence 467888888653
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.30 E-value=3.9e-09 Score=93.00 Aligned_cols=231 Identities=9% Similarity=0.002 Sum_probs=143.2
Q ss_pred CCCceEE-EEeCCCcEEEEeccCC----ceeeeeeccccc--ccccceEEEEECCCCcEEEEE-cC------CeEEEEEc
Q 014125 136 PTSCVFA-STTRDHPIHLWDATTG----LLRCTYRAYDAV--DEITAAFSVAFNPTGTKIFAG-YN------KSVRVFDV 201 (430)
Q Consensus 136 ~~~~~l~-~~~~dg~i~vwd~~~~----~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~-~d------~~i~v~d~ 201 (430)
.++++|+ .+..++.|.++|+.+. +....+....-. ........+...|+| ++++. .+ +.|.++|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 5666655 4566789999999765 444444211000 001144567888999 55532 33 68999998
Q ss_pred CCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEec-------------------CCCeEEEEEcCCceeeEEee
Q 014125 202 HRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS-------------------YSQTSAIYREDNMELLYVLH 262 (430)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-------------------~dg~v~~~d~~~~~~~~~~~ 262 (430)
.+... ....... ......-..+-|+| +.+.+++.. .+.+|.+||+.+++.+.++.
T Consensus 172 ~T~~v----~~~~~~~-~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~ 245 (462)
T 2ece_A 172 YSFEP----LGKWEID-RGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLT 245 (462)
T ss_dssp TTCCE----EEECCSB-CTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEE
T ss_pred CCCeE----EEEEccC-CCCccccceEEECC-CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEe
Confidence 76321 1111110 11112234678899 555777663 47899999999988877776
Q ss_pred cc--ccCeEEEEE--ccCCCEEEEEec-----CCCeEEEEeCCCCceEEEEeecccC----------------CccceEE
Q 014125 263 GQ--EGGVTHVQF--SRDGNYLYTGGR-----KDPYILCWDLRKAVQVVYKLYRSSE----------------HTNQRIL 317 (430)
Q Consensus 263 ~~--~~~i~~~~~--~~~~~~l~~~~~-----~d~~i~i~d~~~~~~~~~~~~~~~~----------------~~~~v~~ 317 (430)
.- ......+.| +|+++++++++. .+++|.+|....+.-.......... .......
T Consensus 246 vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~ 325 (462)
T 2ece_A 246 LGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTD 325 (462)
T ss_dssp SCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCC
T ss_pred cCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeE
Confidence 42 123445655 999999999985 5678888766543211111100000 0245678
Q ss_pred EEEcCCCCEEEEEcc-CCcEEEEEcCC---CCeeccccccc--------------CCeeEEEEcCCCcEEEEee
Q 014125 318 FDIEPSGRHLGTGGQ-DGLVHIYDLQT---GKWISGFQAAA--------------DTVNGFSFHPFLPMAASSS 373 (430)
Q Consensus 318 ~~~~~~~~~l~~~~~-dg~i~vwd~~~---~~~~~~~~~~~--------------~~v~~~~~~~~~~~l~s~~ 373 (430)
+.+||||++|.++.. .+.|.+||+.. .+.+..+.... +....++++|+|++|.++.
T Consensus 326 I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 326 IDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp EEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 999999999887765 57899999863 23444433220 1368899999999888876
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.30 E-value=7.1e-10 Score=97.52 Aligned_cols=255 Identities=12% Similarity=0.058 Sum_probs=148.6
Q ss_pred CceeEEEECcCCceEEEec--CCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCC
Q 014125 61 NFLKGIKWSPDGSSFLTSS--EDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS 138 (430)
Q Consensus 61 ~~v~~~~~sp~~~~l~s~~--~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 138 (430)
.....++++|+|+.+++.. .++.++||.+.+++.. .+.... .....+-..+..+++ ++++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~----------~~~~~~~~~p~gv~~-------d~~g 78 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQS----------GNAIITFDTVLGIKS-------DGNG 78 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCC----------SSCCCCCSCEEEEEE-------CSSS
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcc----------cCcccceeEeeEEEE-------cCCC
Confidence 5689999999999988864 2343556655433211 110000 001123346777887 7778
Q ss_pred ceEEEEeC-----CCcEEEEeccCCceeeeeeccccc-ccccceEEEEECCCCcEEE-EE----cCCeEEEEEcCCCCCc
Q 014125 139 CVFASTTR-----DHPIHLWDATTGLLRCTYRAYDAV-DEITAAFSVAFNPTGTKIF-AG----YNKSVRVFDVHRPGRD 207 (430)
Q Consensus 139 ~~l~~~~~-----dg~i~vwd~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~-~~----~d~~i~v~d~~~~~~~ 207 (430)
+++++-.. ++.|.+||+.+++.+..+...... .....+..+++++++..++ +. .++.|.+||+.... .
T Consensus 79 ~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~-~ 157 (343)
T 2qe8_A 79 IVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGL-A 157 (343)
T ss_dssp EEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCC-E
T ss_pred cEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCC-E
Confidence 76666544 578999999999877776543211 1122457899998655544 43 46899999987532 1
Q ss_pred cccccc---ccC-----CCCC--------------CCcceEEEEEcCCCCceEEEecCC-CeEEEEEcC---Cc-----e
Q 014125 208 FEKYST---LKG-----NKEG--------------QAGIMSAIAFSPTHTGMLAIGSYS-QTSAIYRED---NM-----E 256 (430)
Q Consensus 208 ~~~~~~---~~~-----~~~~--------------~~~~v~~~~~~~~~~~~l~~~~~d-g~v~~~d~~---~~-----~ 256 (430)
...... ... ...+ ....+..++|+|++ +.|+++... ..+..++.. .+ +
T Consensus 158 ~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg-~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~ 236 (343)
T 2qe8_A 158 ARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAEN-EWLYLSPMHSTSMYRIKSADLSNLQLTDAE 236 (343)
T ss_dssp EEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTS-CEEEEEESSCSEEEEEEHHHHTCTTCCHHH
T ss_pred EEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCC-CEEEEEeCCCCeEEEEEHHHhcCCCCChhh
Confidence 111100 000 0000 01236889999955 455555444 466666532 11 0
Q ss_pred eeE--EeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCC
Q 014125 257 LLY--VLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDG 334 (430)
Q Consensus 257 ~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 334 (430)
... ...++.+....++++++|..+++.. .++.|.+||..++. .. .+.. ......+..++|.++|.++++.+..+
T Consensus 237 ~~~~~~~~g~~g~pdgia~d~~G~l~va~~-~~~~V~~~d~~~G~-~~-~~~~-~~~~~~p~~va~~~~g~l~v~~~~~~ 312 (343)
T 2qe8_A 237 LGSKIERYSEKPICDGISIDKDHNIYVGDL-AHSAIGVITSADRA-YK-LLVT-DEKLSWTDSFNFGSDGYLYFDCNQLH 312 (343)
T ss_dssp HHTTCEEEEECCSCSCEEECTTCCEEEEEG-GGTEEEEEETTTTE-EE-EEEE-CGGGSCEEEEEECTTSCEEEEECCGG
T ss_pred hhcceEecccCCCCceEEECCCCCEEEEcc-CCCeEEEEECCCCC-EE-EEEE-CCceecCCeeEECCCCcEEEEeCccc
Confidence 000 1113344567899999998776666 88999999984443 21 2221 12345688999999998888877655
Q ss_pred cEEEE
Q 014125 335 LVHIY 339 (430)
Q Consensus 335 ~i~vw 339 (430)
.+.+|
T Consensus 313 ~~~~f 317 (343)
T 2qe8_A 313 HSAPL 317 (343)
T ss_dssp GSGGG
T ss_pred ccccc
Confidence 55443
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.30 E-value=5e-09 Score=92.36 Aligned_cols=238 Identities=12% Similarity=0.110 Sum_probs=143.2
Q ss_pred cCCceEEE-ecCCCeEEEEeCCCCCCcccccccccccccCcccc-eeeecCCCeeeeeeeccccCccCCCCceEEEEeCC
Q 014125 70 PDGSSFLT-SSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEA-SLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRD 147 (430)
Q Consensus 70 p~~~~l~s-~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d 147 (430)
+++++|+. +..+++|.|+|+.+......+... ... .+.-.. ..+ .|+...++|+| +++++..+
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~--------ie~~~~~~~~-----g~s-~Ph~~~~~pdG-i~Vs~~g~ 157 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKV--------IEPEEVKKVS-----GYS-RLHTVHCGPDA-IYISALGN 157 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEE--------ECHHHHHHHH-----CEE-EEEEEEECSSC-EEEEEEEE
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeee--------echhhccccc-----CCC-cccceeECCCe-EEEEcCCC
Confidence 77877665 556789999999754211000000 000 000000 011 23333447888 77766555
Q ss_pred ------CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEc--------------------CCeEEEEEc
Q 014125 148 ------HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGY--------------------NKSVRVFDV 201 (430)
Q Consensus 148 ------g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--------------------d~~i~v~d~ 201 (430)
|.|.++|..+.+.+..+...... ..-.+.+-|+|+++.++++. +.+|.+||+
T Consensus 158 ~~g~~~g~v~vlD~~T~~v~~~~~~~~~~--~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~ 235 (462)
T 2ece_A 158 EEGEGPGGILMLDHYSFEPLGKWEIDRGD--QYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDL 235 (462)
T ss_dssp TTSCSCCEEEEECTTTCCEEEECCSBCTT--CCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEET
T ss_pred cCCCCCCeEEEEECCCCeEEEEEccCCCC--ccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEEC
Confidence 78999999999999888754321 11234688899999888773 789999999
Q ss_pred CCCCCcccccccccCCCCCCCcceEEEEE--cCCCCceEEEec-----CCCeEEEEEcCCcee--eEEe--ecc------
Q 014125 202 HRPGRDFEKYSTLKGNKEGQAGIMSAIAF--SPTHTGMLAIGS-----YSQTSAIYREDNMEL--LYVL--HGQ------ 264 (430)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~~~~-----~dg~v~~~d~~~~~~--~~~~--~~~------ 264 (430)
.+. . ....+.. .........+.| +|++...++++. .+++|.+|....++. ...+ ...
T Consensus 236 ~~~-k---~~~tI~v--g~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~l 309 (462)
T 2ece_A 236 RKR-K---RIHSLTL--GEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNL 309 (462)
T ss_dssp TTT-E---EEEEEES--CTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSC
T ss_pred CCC-c---EeeEEec--CCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccc
Confidence 863 1 1111111 011223445555 996665555555 678898876654421 1111 110
Q ss_pred ----------ccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCc--eEEEEeecccCC------------ccceEEEEE
Q 014125 265 ----------EGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAV--QVVYKLYRSSEH------------TNQRILFDI 320 (430)
Q Consensus 265 ----------~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~~------------~~~v~~~~~ 320 (430)
......|.++|||++|+++....+.|.+||+.... .....+.. .+. ......+++
T Consensus 310 p~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~t-GG~~~~~~~~~G~~~~ggPr~~~l 388 (462)
T 2ece_A 310 PEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKL-GGIFHRADHPAGHKLTGAPQMLEI 388 (462)
T ss_dssp CGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-BTTTTCBCCTTSCCCCSCCCCEEE
T ss_pred cccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEe-CCeeccccccccccCCCCCCEEEE
Confidence 23468899999999999999889999999986432 22222211 110 113567999
Q ss_pred cCCCCEEEEEc
Q 014125 321 EPSGRHLGTGG 331 (430)
Q Consensus 321 ~~~~~~l~~~~ 331 (430)
+|||++|+++.
T Consensus 389 SpDGk~LyVaN 399 (462)
T 2ece_A 389 SRDGRRVYVTN 399 (462)
T ss_dssp CTTSSEEEEEC
T ss_pred cCCCCEEEEEc
Confidence 99999999887
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.29 E-value=9.4e-11 Score=106.90 Aligned_cols=244 Identities=11% Similarity=0.041 Sum_probs=159.2
Q ss_pred cCCceEEEecC-CCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccC-CCCceEEEEe--
Q 014125 70 PDGSSFLTSSE-DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASD-PTSCVFASTT-- 145 (430)
Q Consensus 70 p~~~~l~s~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~l~~~~-- 145 (430)
+||++|..... ++.|.+.|+++.+.... +.+..+.....+++. + |++.++++++
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~i----------------i~ip~g~~phg~~~~------~~p~~~~v~~~~~~ 156 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAI----------------LEIPNAKGIHGLRPQ------KWPRSNYVFCNGED 156 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEE----------------EECSSCCSEEEEEEC------CSSBCSEEEEEECS
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeE----------------EeCCCCCCCcceeee------ecCCCcEEEEeccc
Confidence 38887776655 56799999987653321 122222344455541 2 5677777774
Q ss_pred ----------------CCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCC--------------
Q 014125 146 ----------------RDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNK-------------- 194 (430)
Q Consensus 146 ----------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~-------------- 194 (430)
.++.+.++|..+.+...++.... ....++++|+|++++++ .+.
T Consensus 157 ~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg------~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~ 230 (595)
T 1fwx_A 157 ETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG------NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEM 230 (595)
T ss_dssp CEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS------CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSE
T ss_pred ccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC------CccceEECCCCCEEEEEecCcccCcchhhcccccc
Confidence 34679999999998888877543 22367899999999854 331
Q ss_pred -eEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCC--cee-eEEeeccccCeEE
Q 014125 195 -SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN--MEL-LYVLHGQEGGVTH 270 (430)
Q Consensus 195 -~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~--~~~-~~~~~~~~~~i~~ 270 (430)
.|.+.|..... .+.+++....+ +.|.+.|.++ ++. +..+.. .....+
T Consensus 231 d~v~V~~~~~~~-----------------------~~v~~Gk~~~i-----~~V~VID~~~~~~~~~~~~Ipv-g~~PhG 281 (595)
T 1fwx_A 231 DHIVVFNIAEIE-----------------------KAIAAGDYQEL-----NGVKVVDGRKEASSLFTRYIPI-ANNPHG 281 (595)
T ss_dssp EEEEEEEHHHHH-----------------------HHHHHTCSEEE-----TTEEEEECSGGGCCSSEEEEEE-ESSCCC
T ss_pred ceEEEeecccee-----------------------EeccCCCeeEE-----CcEEEEeCcccCCceeEEEEec-CCCceE
Confidence 24455442200 11222322222 5599999998 544 445542 345688
Q ss_pred EEEccCCCEEEEEecCCCeEEEEeCCCCce-----------EEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEE
Q 014125 271 VQFSRDGNYLYTGGRKDPYILCWDLRKAVQ-----------VVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIY 339 (430)
Q Consensus 271 ~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 339 (430)
+.++|||+++++++..+.+|.++|+.+... .... ..-......++|+|+|...++...|+.|.+|
T Consensus 282 v~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~----v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kw 357 (595)
T 1fwx_A 282 CNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE----PELGLGPLHTAFDGRGNAYTSLFLDSQVVKW 357 (595)
T ss_dssp EEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEEC----CBCCSCEEEEEECTTSEEEEEETTTTEEEEE
T ss_pred EEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEE----cCCCCCcceEEECCCCeEEEEEecCCcEEEE
Confidence 999999999999988899999999985421 1111 2234567889999999545566779999999
Q ss_pred EcCC----------CCeecccccccCC-----eeEEEEcCCCcEEEEeeC
Q 014125 340 DLQT----------GKWISGFQAAADT-----VNGFSFHPFLPMAASSSG 374 (430)
Q Consensus 340 d~~~----------~~~~~~~~~~~~~-----v~~~~~~~~~~~l~s~~~ 374 (430)
|+.+ .+.+..+..|-.+ -.++..+|||++|+++..
T Consensus 358 di~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk 407 (595)
T 1fwx_A 358 NIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK 407 (595)
T ss_dssp EHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred EhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence 9987 4556666554332 233456899999999864
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.29 E-value=9.2e-10 Score=105.43 Aligned_cols=295 Identities=9% Similarity=0.066 Sum_probs=172.0
Q ss_pred CceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEE
Q 014125 72 GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIH 151 (430)
Q Consensus 72 ~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 151 (430)
+..|+.++.++.|.-+|..+++..-.......... ...... ......++. ++..+++++.|+.|.
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~--~~~~~~----~~~~~~~a~---------~~~~v~v~~~dg~l~ 141 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRST--GFKGCC----DVVNRGVAL---------WKGKVYVGAWDGRLI 141 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGG--GGGSSS----CSCCCCCEE---------ETTEEEEECTTSEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccc--cccccc----cCCCCCceE---------ECCEEEEEcCCCEEE
Confidence 45666777788999999988865433221110000 000000 000001111 356788889999999
Q ss_pred EEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEc------CCeEEEEEcCCCCCcccccccccCC--------
Q 014125 152 LWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGY------NKSVRVFDVHRPGRDFEKYSTLKGN-------- 217 (430)
Q Consensus 152 vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------d~~i~v~d~~~~~~~~~~~~~~~~~-------- 217 (430)
.+|..+|+.+..+...........+.+--...++..++++. ++.|+.+|..++...+.........
T Consensus 142 alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~ 221 (677)
T 1kb0_A 142 ALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDES 221 (677)
T ss_dssp EEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHH
T ss_pred EEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccc
Confidence 99999999988887641100000111111111454554332 6899999998765443321111000
Q ss_pred -------CC---------CCCcceEEEEEcCCCCceEEEecCCC-------------------eEEEEEcCCceeeEEee
Q 014125 218 -------KE---------GQAGIMSAIAFSPTHTGMLAIGSYSQ-------------------TSAIYREDNMELLYVLH 262 (430)
Q Consensus 218 -------~~---------~~~~~v~~~~~~~~~~~~l~~~~~dg-------------------~v~~~d~~~~~~~~~~~ 262 (430)
.. +.......++++| ...+++++..++ .|..+|.++++.+..++
T Consensus 222 ~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~-~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~ 300 (677)
T 1kb0_A 222 MKRAARTWDPSGKWWEAGGGGTMWDSMTFDA-ELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQ 300 (677)
T ss_dssp HHHHHTTSCGGGCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEE
T ss_pred cccccccccccCceeEeCCCcccccceeEcC-CCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEe
Confidence 00 1111223578888 455777776654 59999999999887766
Q ss_pred c--cc-------cCeEEEEEccCC---CEEEEEecCCCeEEEEeCCCCceEEEEeecccC-------Cccce--------
Q 014125 263 G--QE-------GGVTHVQFSRDG---NYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSE-------HTNQR-------- 315 (430)
Q Consensus 263 ~--~~-------~~i~~~~~~~~~---~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-------~~~~v-------- 315 (430)
. |. .....+....+| ..++.++ .+|.|+++|..+++........... ....+
T Consensus 301 ~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~-~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~ 379 (677)
T 1kb0_A 301 ETPGDNWDYTSTQPMILADIKIAGKPRKVILHAP-KNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDG 379 (677)
T ss_dssp SSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECC-TTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCT
T ss_pred cCCCcccccccCCCcEEEecccCCcEeeEEEEEC-CCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcC
Confidence 3 21 112223334477 5677777 8999999999998654432211000 00000
Q ss_pred ----------------EEEEEcCCCCEEEEEcc-------------------------------------------CCcE
Q 014125 316 ----------------ILFDIEPSGRHLGTGGQ-------------------------------------------DGLV 336 (430)
Q Consensus 316 ----------------~~~~~~~~~~~l~~~~~-------------------------------------------dg~i 336 (430)
..++++|++.++++... .|.|
T Consensus 380 ~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l 459 (677)
T 1kb0_A 380 SKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRL 459 (677)
T ss_dssp TSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEE
T ss_pred CCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEE
Confidence 14688998888777543 2779
Q ss_pred EEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCCC
Q 014125 337 HIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFE 384 (430)
Q Consensus 337 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~ 384 (430)
..||+.+++.+..+. +..++.+..+...+.+++.++.|+.+++||..
T Consensus 460 ~A~D~~tG~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~ 506 (677)
T 1kb0_A 460 LAWDPVAQKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAA 506 (677)
T ss_dssp EEEETTTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred EEEeCCCCcEEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECC
Confidence 999999999888776 33455555667778888888877777777653
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.28 E-value=4.7e-09 Score=100.76 Aligned_cols=278 Identities=14% Similarity=0.082 Sum_probs=163.7
Q ss_pred CceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEe------
Q 014125 72 GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTT------ 145 (430)
Q Consensus 72 ~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~------ 145 (430)
+..|+.++.|+.|..+|..+++..-...... +......+...|. -.++ .++.++
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~---------------~~~~~~~~~~sP~----v~~g-~v~vg~~~~~~~ 180 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRA---------------DHKRSYTITGAPR----VVNG-KVVIGNGGAEFG 180 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCS---------------CTTSCCBCCSCCE----EETT-EEEECCBCTTTC
T ss_pred CCEEEEEccCCEEEEEECCCCCEeeeecCcC---------------CCCCCccccCCcE----EECC-EEEEEeCCCccC
Confidence 4578888899999999999886543322110 0000011111110 0033 344443
Q ss_pred CCCcEEEEeccCCceeeeeeccccc--------------------------ccccceEEEEECCCCcEEEEE-cCC----
Q 014125 146 RDHPIHLWDATTGLLRCTYRAYDAV--------------------------DEITAAFSVAFNPTGTKIFAG-YNK---- 194 (430)
Q Consensus 146 ~dg~i~vwd~~~~~~~~~~~~~~~~--------------------------~~~~~v~~~~~~~~~~~l~~~-~d~---- 194 (430)
.+|.|..||..+|+.+..+...... ........++++|+...++.+ .++
T Consensus 181 ~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~ 260 (689)
T 1yiq_A 181 VRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWD 260 (689)
T ss_dssp CBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSC
T ss_pred CCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccc
Confidence 3689999999999988877532100 000011257888888877755 443
Q ss_pred ---------------eEEEEEcCCCCCcccccccccCCC-CCCCcceEEEEEcCCC--CceEEEecCCCeEEEEEcCCce
Q 014125 195 ---------------SVRVFDVHRPGRDFEKYSTLKGNK-EGQAGIMSAIAFSPTH--TGMLAIGSYSQTSAIYREDNME 256 (430)
Q Consensus 195 ---------------~i~v~d~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~--~~~l~~~~~dg~v~~~d~~~~~ 256 (430)
.|..+|..++...+.......... .....+........++ ...++.++.+|.++++|.++++
T Consensus 261 ~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 340 (689)
T 1yiq_A 261 PKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGE 340 (689)
T ss_dssp HHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred cCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCC
Confidence 499999988654443211100000 0011122222222212 2378889999999999999998
Q ss_pred eeEEeeccc----------------------------c-----------CeEEEEEccCCCEEEEEecC-----------
Q 014125 257 LLYVLHGQE----------------------------G-----------GVTHVQFSRDGNYLYTGGRK----------- 286 (430)
Q Consensus 257 ~~~~~~~~~----------------------------~-----------~i~~~~~~~~~~~l~~~~~~----------- 286 (430)
.+....... . .-..++|+|+...+++....
T Consensus 341 ~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~ 420 (689)
T 1yiq_A 341 LLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEA 420 (689)
T ss_dssp EEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSC
T ss_pred EeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeecccc
Confidence 874332100 0 01137888988888776311
Q ss_pred ---------------------------------CCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccC
Q 014125 287 ---------------------------------DPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQD 333 (430)
Q Consensus 287 ---------------------------------d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 333 (430)
+|.|+.||+.+++........ .....-.+...+.+++.|+.|
T Consensus 421 ~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~-----~~~~~g~~~tagglvf~gt~d 495 (689)
T 1yiq_A 421 PKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV-----TIFNGGTLSTAGNLVFEGSAD 495 (689)
T ss_dssp CCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES-----SSCCCCEEEETTTEEEEECTT
T ss_pred ccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCC-----CCccCccceECCCEEEEECCC
Confidence 378999999998655433221 122223445567899999999
Q ss_pred CcEEEEEcCCCCeecccccccCC-eeEEEEcCCCc-EEEEeeC
Q 014125 334 GLVHIYDLQTGKWISGFQAAADT-VNGFSFHPFLP-MAASSSG 374 (430)
Q Consensus 334 g~i~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~-~l~s~~~ 374 (430)
|.++.||.++|+.+..++...+. ..-+.|..+|+ ++++.+.
T Consensus 496 g~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~~G 538 (689)
T 1yiq_A 496 GRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFMAG 538 (689)
T ss_dssp SEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred CcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEEEec
Confidence 99999999999999888755432 24467778887 5555544
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.26 E-value=2.1e-09 Score=103.03 Aligned_cols=273 Identities=12% Similarity=0.034 Sum_probs=165.3
Q ss_pred CceEEEecCCCeEEEEeCCCCCCccccccc-ccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeC----
Q 014125 72 GSSFLTSSEDKTLRIFSLPENGISYDVNAC-SLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTR---- 146 (430)
Q Consensus 72 ~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~---- 146 (430)
+..|+.++.|+.|..+|..+++..-..... .. .....+ .-.|. - .+..+++++.
T Consensus 128 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~-------------~~~~~~---~~~p~----v-~~~~v~v~~~~~~~ 186 (677)
T 1kb0_A 128 KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQ-------------KGSLTI---TGAPR----V-FKGKVIIGNGGAEY 186 (677)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEETTTTC-------------CSSCBC---CSCCE----E-ETTEEEECCBCTTT
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeeecCCcCc-------------CcCccc---ccCcE----E-ECCEEEEEeccccc
Confidence 457888888999999999988664333221 00 000000 00010 0 1234454443
Q ss_pred --CCcEEEEeccCCceeeeeecccccc---------------------------cccceEEEEECCCCcEEEEE-cCC--
Q 014125 147 --DHPIHLWDATTGLLRCTYRAYDAVD---------------------------EITAAFSVAFNPTGTKIFAG-YNK-- 194 (430)
Q Consensus 147 --dg~i~vwd~~~~~~~~~~~~~~~~~---------------------------~~~~v~~~~~~~~~~~l~~~-~d~-- 194 (430)
+|.|+.+|..+|+.+..+....... .......++++|++..++.+ .++
T Consensus 187 ~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~ 266 (677)
T 1kb0_A 187 GVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSP 266 (677)
T ss_dssp CCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEES
T ss_pred CCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCcc
Confidence 6899999999999988776533210 00112357888888888754 332
Q ss_pred -----------------eEEEEEcCCCCCcccccccccCCC-CCCCcceEEEEEcCCCC--ceEEEecCCCeEEEEEcCC
Q 014125 195 -----------------SVRVFDVHRPGRDFEKYSTLKGNK-EGQAGIMSAIAFSPTHT--GMLAIGSYSQTSAIYREDN 254 (430)
Q Consensus 195 -----------------~i~v~d~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~--~~l~~~~~dg~v~~~d~~~ 254 (430)
.|..+|..++...+.......... .........+....++. ..++.++.+|.++++|..+
T Consensus 267 w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~t 346 (677)
T 1kb0_A 267 WSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTN 346 (677)
T ss_dssp SCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTT
T ss_pred ccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCC
Confidence 488888887654332211100000 00011122223333232 6889999999999999999
Q ss_pred ceeeEEeeccc-----------cCe------------------------EEEEEccCCCEEEEEecC-------------
Q 014125 255 MELLYVLHGQE-----------GGV------------------------THVQFSRDGNYLYTGGRK------------- 286 (430)
Q Consensus 255 ~~~~~~~~~~~-----------~~i------------------------~~~~~~~~~~~l~~~~~~------------- 286 (430)
++.+..+.... .++ ..++|+|++..+++.. .
T Consensus 347 G~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~-~~~~~~~~~~~~~~ 425 (677)
T 1kb0_A 347 GKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPA-QNVPVNLMDDKKWE 425 (677)
T ss_dssp CCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEE-EECCCEEEECTTCC
T ss_pred CCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeC-hhcceeeecccccc
Confidence 99876654211 001 1578899988888765 2
Q ss_pred ------------------------------CCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcE
Q 014125 287 ------------------------------DPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLV 336 (430)
Q Consensus 287 ------------------------------d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 336 (430)
.|.|..||+.+++....... ...+....+...+..++.++.||.+
T Consensus 426 ~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~-----~~~~~~g~~~~~g~~v~~g~~dg~l 500 (677)
T 1kb0_A 426 FNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH-----VSPWNGGTLTTAGNVVFQGTADGRL 500 (677)
T ss_dssp TTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE-----SSSCCCCEEEETTTEEEEECTTSEE
T ss_pred cccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC-----CCCCcCcceEeCCCEEEEECCCCcE
Confidence 17899999999865543321 2223334455678889999999999
Q ss_pred EEEEcCCCCeecccccccC-CeeEEEEcCCCcEEEE
Q 014125 337 HIYDLQTGKWISGFQAAAD-TVNGFSFHPFLPMAAS 371 (430)
Q Consensus 337 ~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~s 371 (430)
++||+.+++.+..+....+ ...-+.|.++|+.++.
T Consensus 501 ~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 501 VAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp EEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred EEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEE
Confidence 9999999999998875432 2344566778874433
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=5.2e-12 Score=112.11 Aligned_cols=239 Identities=15% Similarity=0.047 Sum_probs=128.7
Q ss_pred CCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCCccccccccc
Q 014125 137 TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFEKYSTLK 215 (430)
Q Consensus 137 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~ 215 (430)
++..+++++.||.|+.||..+|+.+..+.. . .+.+..+..++..+++ +.|+.|+.||..++...+.......
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~------~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~ 80 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-D------PVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIP 80 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC-C------CSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC-C------CceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCc
Confidence 567899999999999999999999888775 2 3444445567766665 4899999999976543222110000
Q ss_pred CCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeC
Q 014125 216 GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDL 295 (430)
Q Consensus 216 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~ 295 (430)
... ...+ .+. .+..+++++.++.|+.||..+++.+..+..+. ...++|++..+++++ .|+.|+.||.
T Consensus 81 ~~~--~~sp----~~~--~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~-~dg~v~a~d~ 147 (369)
T 2hz6_A 81 ELV--QASP----CRS--SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGR-TEYTITMYDT 147 (369)
T ss_dssp HHH--TTCS----CC-------CCCCEEEEEEEEECCC--------------------------EEEEE-EEEEEECCCS
T ss_pred ccc--ccCc----eEe--cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEe-cCCEEEEEEC
Confidence 000 0011 111 22367778889999999999999887776543 235567888888888 8999999999
Q ss_pred CCCceEEEEeecccCCccceEEEEEcCCC---CEEEEEccCCcEEEEEcCCCCeecccccccCCe-eEEEEcCCCcEEE-
Q 014125 296 RKAVQVVYKLYRSSEHTNQRILFDIEPSG---RHLGTGGQDGLVHIYDLQTGKWISGFQAAADTV-NGFSFHPFLPMAA- 370 (430)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~- 370 (430)
++++........ . .....++++. ..+++++.||.|+.||..+++.+..+.. ..++ ....+++++...+
T Consensus 148 ~tG~~~W~~~~~--~----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~-~~pv~~~~~~~~dg~~~v~ 220 (369)
T 2hz6_A 148 KTRELRWNATYF--D----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY-ASPVVAFYVWQREGLRKVM 220 (369)
T ss_dssp SSSSCCCEEEEE--E----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC-SSCEEEEEECTTSSCEEEC
T ss_pred CCCCEEEeEecc--c----ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC-CCceEEEEEecCCceEecc
Confidence 987643322110 1 1122233322 4577788999999999999998877763 3344 3345566664321
Q ss_pred ---Eee--------CCce---eeecCCC-------------ccccccCCCcEEEEeecc
Q 014125 371 ---SSS--------GHRR---FPVDDFE-------------DLHLSGDENCVSVWSFLY 402 (430)
Q Consensus 371 ---s~~--------~d~~---~~vw~~~-------------~l~~~~~d~~i~~w~~~~ 402 (430)
.++ .+|. +.+|... .++.++.||.++..+...
T Consensus 221 ~~~~~~~~l~~ld~~tG~~~~~~~W~~~~~~~~~sp~~~~g~lyv~~~~G~l~al~~~~ 279 (369)
T 2hz6_A 221 HINVAVETLRYLTFMSGEVGRITKWKYPFPKETEAKSKLTPTLYVGKYSTSLYASPSMV 279 (369)
T ss_dssp CEEEEHHHHHHHHHHHHHHHHHHTSCCCCCCHHHHHHHSEEEECBEECSSCEECCEEEE
T ss_pred ceeecccceeeeehhcCCcccceeeeeccCccccccccccceEEEecccCCEEecCccc
Confidence 111 1111 1445332 356677788888888764
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.19 E-value=8.5e-09 Score=91.97 Aligned_cols=265 Identities=9% Similarity=0.110 Sum_probs=151.0
Q ss_pred CCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcE
Q 014125 71 DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPI 150 (430)
Q Consensus 71 ~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i 150 (430)
++..++.++.++.|..+|..+++........ ..+.. .| .-.+..++.++.++.|
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~------------------~~~~~---~p-----~~~~~~v~v~~~~g~l 155 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVA------------------GEALS---RP-----VVSDGLVLIHTSNGQL 155 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECS------------------SCCCS---CC-----EEETTEEEEECTTSEE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCC------------------CceEc---CC-----EEECCEEEEEcCCCeE
Confidence 3456777888999999999887543221110 01100 00 0023477888889999
Q ss_pred EEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccCCC-------CCCCc
Q 014125 151 HLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNK-------EGQAG 223 (430)
Q Consensus 151 ~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~-------~~~~~ 223 (430)
..+|..+|+.+..................... ++..+++..++.|..+|..++...+.......... .....
T Consensus 156 ~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~ 234 (376)
T 3q7m_A 156 QALNEADGAVKWTVNLDMPSLSLRGESAPTTA-FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTT 234 (376)
T ss_dssp EEEETTTCCEEEEEECCC-----CCCCCCEEE-TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCC
T ss_pred EEEECCCCcEEEEEeCCCCceeecCCCCcEEE-CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCC
Confidence 99999999988777654321100000111222 44444455788999999876543322111000000 00011
Q ss_pred ceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEE
Q 014125 224 IMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVY 303 (430)
Q Consensus 224 ~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~ 303 (430)
+ .. .+..+++++.++.+..+|..+++.+..... .....+.. ++..+++++ .++.|..+|..+++....
T Consensus 235 p----~~---~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~--~~~~l~~~~-~~g~l~~~d~~tG~~~w~ 302 (376)
T 3q7m_A 235 P----VV---VNGVVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIV--DGNRIYLVD-QNDRVMALTIDGGVTLWT 302 (376)
T ss_dssp C----EE---ETTEEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEE--ETTEEEEEE-TTCCEEEEETTTCCEEEE
T ss_pred c----EE---ECCEEEEEecCcEEEEEECCCCcEEeeccC--CCCCCceE--ECCEEEEEc-CCCeEEEEECCCCcEEEe
Confidence 1 11 124677778899999999999988766542 23444444 466788888 899999999998865432
Q ss_pred EeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCceeee
Q 014125 304 KLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPV 380 (430)
Q Consensus 304 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~v 380 (430)
.. . .....+..... .+..|+.++.+|.|+++|..+++.+.........+...... .+..|+.++.+|.+..
T Consensus 303 ~~-~--~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~-~~~~l~v~~~~G~l~~ 373 (376)
T 3q7m_A 303 QS-D--LLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVA-ADGKLLIQAKDGTVYS 373 (376)
T ss_dssp EC-T--TTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEE-ETTEEEEEBTTSCEEE
T ss_pred ec-c--cCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEE-ECCEEEEEeCCCEEEE
Confidence 21 0 11111222222 25678889999999999999999887766533333221111 1344555554444443
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.16 E-value=3.1e-09 Score=92.89 Aligned_cols=213 Identities=12% Similarity=0.078 Sum_probs=134.7
Q ss_pred CceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccCC
Q 014125 138 SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGN 217 (430)
Q Consensus 138 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~ 217 (430)
+..+..++.++.+..+|.. ++.......... .+.++...+++.+++++.++.|..+|.. +...... .
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~-----~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~--~---- 173 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKA-----IYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRF--K---- 173 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEEECSSC-----CCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEE--E----
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCc-----eeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEE--e----
Confidence 3467778888999999988 776665554332 4556677778887777778999999986 3221111 0
Q ss_pred CCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCC
Q 014125 218 KEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRK 297 (430)
Q Consensus 218 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~ 297 (430)
.....+.++...+ ++. +.+++ +.|..+| .+++...........+.++...++|. |++++ .++.|..+|..
T Consensus 174 --~~~~~~~~~~~d~-~g~-l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t-~~~gl~~~~~~- 243 (330)
T 3hxj_A 174 --TNDAITSAASIGK-DGT-IYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTS-LDGHLYAINPD- 243 (330)
T ss_dssp --CSSCCCSCCEECT-TCC-EEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEEEE-TTTEEEEECTT-
T ss_pred --cCCCceeeeEEcC-CCE-EEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEEEc-CCCeEEEECCC-
Confidence 1122345556655 343 44455 8899999 67777666665556788888888875 55566 67888888753
Q ss_pred CceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCce
Q 014125 298 AVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRR 377 (430)
Q Consensus 298 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~ 377 (430)
+.... ... .....+..+.+.+++ .|..++.+|.|..+|. +++.+..+......+.++...+++.+.+ ++.+|.
T Consensus 244 g~~~~-~~~---~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~~-gt~~G~ 316 (330)
T 3hxj_A 244 GTEKW-RFK---TGKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTIYF-GTRNGK 316 (330)
T ss_dssp SCEEE-EEE---CSSCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCEEE-ECTTSC
T ss_pred CCEeE-Eee---CCCCccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEEEE-EcCCCe
Confidence 32322 221 112222334555555 4667788888999996 6777666655555677777777776544 444444
Q ss_pred eee
Q 014125 378 FPV 380 (430)
Q Consensus 378 ~~v 380 (430)
+.+
T Consensus 317 ~~~ 319 (330)
T 3hxj_A 317 FYA 319 (330)
T ss_dssp EEE
T ss_pred EEE
Confidence 433
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=8e-08 Score=79.55 Aligned_cols=200 Identities=9% Similarity=0.062 Sum_probs=129.4
Q ss_pred ceeEEEECcCCceEEEecC--CCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCc
Q 014125 62 FLKGIKWSPDGSSFLTSSE--DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC 139 (430)
Q Consensus 62 ~v~~~~~sp~~~~l~s~~~--dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (430)
....+.|+||+.++++.+. ++.|++.|+.+++........ .......+++ . .+.
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~----------------~~~fgeGi~~-------~-g~~ 77 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMD----------------DSYFGEGLTL-------L-NEK 77 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECC----------------TTCCEEEEEE-------E-TTE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecC----------------CCcceEEEEE-------e-CCE
Confidence 4679999999766665553 579999999988654332211 1011112333 1 123
Q ss_pred eEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccccccccCCC
Q 014125 140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNK 218 (430)
Q Consensus 140 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~ 218 (430)
+.++.-.++.+.++|..+.+.+..+... . . . ...++++++.++.+ .++.|.++|..+.... ..+.-..
T Consensus 78 lyv~t~~~~~v~viD~~t~~v~~~i~~g-~-~---~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~----~~I~Vg~ 146 (266)
T 2iwa_A 78 LYQVVWLKNIGFIYDRRTLSNIKNFTHQ-M-K---D--GWGLATDGKILYGSDGTSILYEIDPHTFKLI----KKHNVKY 146 (266)
T ss_dssp EEEEETTCSEEEEEETTTTEEEEEEECC-S-S---S--CCEEEECSSSEEEECSSSEEEEECTTTCCEE----EEEECEE
T ss_pred EEEEEecCCEEEEEECCCCcEEEEEECC-C-C---C--eEEEEECCCEEEEECCCCeEEEEECCCCcEE----EEEEECC
Confidence 4455556889999999999988888654 1 1 1 23344577766654 6789999998763211 1111000
Q ss_pred CC-CCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccc-------------cCeEEEEEccCCCEEEEEe
Q 014125 219 EG-QAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE-------------GGVTHVQFSRDGNYLYTGG 284 (430)
Q Consensus 219 ~~-~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~-------------~~i~~~~~~~~~~~l~~~~ 284 (430)
.+ .-..+..+.|. ++.+++....++.|.+.|..+++.+..+.... ...+.|+|+|+++.+++++
T Consensus 147 ~~~p~~~~nele~~--dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTg 224 (266)
T 2iwa_A 147 NGHRVIRLNELEYI--NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTG 224 (266)
T ss_dssp TTEECCCEEEEEEE--TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEE
T ss_pred CCcccccceeEEEE--CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEEC
Confidence 01 11235677777 34566666678999999999999888876321 2458999999999888887
Q ss_pred cCCCeEEEEeCCCC
Q 014125 285 RKDPYILCWDLRKA 298 (430)
Q Consensus 285 ~~d~~i~i~d~~~~ 298 (430)
...+.|...++...
T Consensus 225 k~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 225 KLWPKLFEIKLHLV 238 (266)
T ss_dssp TTCSEEEEEEEEEC
T ss_pred CCCCeEEEEEEecc
Confidence 67888888877543
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.06 E-value=5.5e-07 Score=75.91 Aligned_cols=233 Identities=9% Similarity=0.004 Sum_probs=137.1
Q ss_pred eEEEEeCCCcEEEEeccCCcee-----eeeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCCcccccc
Q 014125 140 VFASTTRDHPIHLWDATTGLLR-----CTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYS 212 (430)
Q Consensus 140 ~l~~~~~dg~i~vwd~~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~~~~~ 212 (430)
+|+.+.. +.|+.+++...... ..+.... ..+..++|++++..|+ +. .++.|..+++..... .
T Consensus 3 ~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~-----~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~--~--- 71 (267)
T 1npe_A 3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPA-----KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP--T--- 71 (267)
T ss_dssp EEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEE-----EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC--E---
T ss_pred EEEEEcC-CeEEEEEecCcccccccceeeecCCC-----CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc--E---
Confidence 4444443 46888888765321 1111111 1567899999776666 44 578999999865321 1
Q ss_pred cccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecC--CCeE
Q 014125 213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRK--DPYI 290 (430)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~--d~~i 290 (430)
... .........++++|+++.++++-...+.|.++++..................++++|++..|+.+... .+.|
T Consensus 72 ~~~---~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I 148 (267)
T 1npe_A 72 TII---RQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKI 148 (267)
T ss_dssp EEE---CTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEE
T ss_pred EEE---ECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEE
Confidence 110 11123578999999667777777778899999987543222222222457899999987777776623 4688
Q ss_pred EEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEE-EEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEE
Q 014125 291 LCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLG-TGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMA 369 (430)
Q Consensus 291 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 369 (430)
..+++....... +. .........++++|++..|. +-...+.|.++|+........+.. .....+++.. +..|
T Consensus 149 ~~~~~dg~~~~~--~~--~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d--~~~l 221 (267)
T 1npe_A 149 ETSHMDGTNRRI--LA--QDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY--GKNL 221 (267)
T ss_dssp EEEETTSCCCEE--EE--CTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE--TTEE
T ss_pred EEEecCCCCcEE--EE--ECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEEEEe--CCEE
Confidence 888886543221 11 12234578899999876655 444567899999985443322222 2233455543 3333
Q ss_pred EEeeCCceeeecCCCccccccCCCcEEEEeeccccccccc
Q 014125 370 ASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYASMMENA 409 (430)
Q Consensus 370 ~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~~~~~~ 409 (430)
..+.. ..+.|.+++...++.+..+
T Consensus 222 yva~~----------------~~~~v~~~d~~~g~~~~~i 245 (267)
T 1npe_A 222 YYTDW----------------KTNSVIAMDLAISKEMDTF 245 (267)
T ss_dssp EEEET----------------TTTEEEEEETTTTEEEEEE
T ss_pred EEEEC----------------CCCeEEEEeCCCCCceEEE
Confidence 33332 2456666666655554444
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=1.1e-07 Score=78.82 Aligned_cols=185 Identities=10% Similarity=0.073 Sum_probs=122.1
Q ss_pred eEEEEECCCCcEEEEE-c--CCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEc
Q 014125 176 AFSVAFNPTGTKIFAG-Y--NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRE 252 (430)
Q Consensus 176 v~~~~~~~~~~~l~~~-~--d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~ 252 (430)
...+.|++++.+++++ . ++.|+++|+.++... .... + ..+ .....+++. +..++++.-.++.+.++|.
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~-~~i~-l----~~~-~fgeGi~~~--g~~lyv~t~~~~~v~viD~ 93 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVE-NIHK-M----DDS-YFGEGLTLL--NEKLYQVVWLKNIGFIYDR 93 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEE-EEEE-C----CTT-CCEEEEEEE--TTEEEEEETTCSEEEEEET
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEE-EEEe-c----CCC-cceEEEEEe--CCEEEEEEecCCEEEEEEC
Confidence 4689999987555554 2 589999999874321 1110 1 111 112345554 4557777778999999999
Q ss_pred CCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeeccc-CCccceEEEEEcCCCCEEEEEc
Q 014125 253 DNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSS-EHTNQRILFDIEPSGRHLGTGG 331 (430)
Q Consensus 253 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~ 331 (430)
.+.+.+..+..... ....+++||+.++++. .++.|.++|..+.+.......... ..-..++.+.|. +|+..+...
T Consensus 94 ~t~~v~~~i~~g~~--~g~glt~Dg~~l~vs~-gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~ 169 (266)
T 2iwa_A 94 RTLSNIKNFTHQMK--DGWGLATDGKILYGSD-GTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIW 169 (266)
T ss_dssp TTTEEEEEEECCSS--SCCEEEECSSSEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEET
T ss_pred CCCcEEEEEECCCC--CeEEEEECCCEEEEEC-CCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecC
Confidence 99998888763211 1234566888888887 789999999988754432221111 111236678887 676555555
Q ss_pred cCCcEEEEEcCCCCeecccccc-------------cCCeeEEEEcCCCcEEEEee
Q 014125 332 QDGLVHIYDLQTGKWISGFQAA-------------ADTVNGFSFHPFLPMAASSS 373 (430)
Q Consensus 332 ~dg~i~vwd~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~l~s~~ 373 (430)
.++.|.+.|..+++.+..+... .....+|+|+|+++.|+.++
T Consensus 170 ~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTg 224 (266)
T 2iwa_A 170 QTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTG 224 (266)
T ss_dssp TSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEE
T ss_pred CCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEEC
Confidence 6789999999999998877532 13568999999987555544
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=1.5e-07 Score=81.82 Aligned_cols=228 Identities=11% Similarity=0.051 Sum_probs=136.8
Q ss_pred CCCCceEEEEeCCCcEEEEeccCCceeeeeecccc---------------cccccceEEEEECC-CCcEEEEEcCCeEEE
Q 014125 135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDA---------------VDEITAAFSVAFNP-TGTKIFAGYNKSVRV 198 (430)
Q Consensus 135 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~---------------~~~~~~v~~~~~~~-~~~~l~~~~d~~i~v 198 (430)
++++++++++..++.|..|+..+++.. .+..... ......+..+++.+ ++.++++...+.|..
T Consensus 27 d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~~~i~~ 105 (322)
T 2fp8_A 27 DSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSV 105 (322)
T ss_dssp CTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETTTEEEE
T ss_pred cCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECCCCEEE
Confidence 778888888888999999998765443 2221100 00112567899997 777666766666888
Q ss_pred EEcCCCCCcccccccccCCCCC-CCcceEEEEEcC-CCCceEEEecC-----------------CCeEEEEEcCCceeeE
Q 014125 199 FDVHRPGRDFEKYSTLKGNKEG-QAGIMSAIAFSP-THTGMLAIGSY-----------------SQTSAIYREDNMELLY 259 (430)
Q Consensus 199 ~d~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~-~~~~~l~~~~~-----------------dg~v~~~d~~~~~~~~ 259 (430)
+|..... ...+.. ...+ .......+++.+ ++ +++++-.. ++.|..||..+++...
T Consensus 106 ~d~~~g~--~~~~~~---~~~~~~~~~p~~i~~d~~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~ 179 (322)
T 2fp8_A 106 VGSEGGH--ATQLAT---SVDGVPFKWLYAVTVDQRTG-IVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTL 179 (322)
T ss_dssp ECTTCEE--CEEEES---EETTEECSCEEEEEECTTTC-CEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEE
T ss_pred EeCCCCE--EEEecc---cCCCCcccccceEEEecCCC-EEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEE
Confidence 8765321 111110 0011 113467899998 55 45554322 3778999987665433
Q ss_pred EeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCce-EEEEeecccCCccceEEEEEcCCCCEEEEEcc------
Q 014125 260 VLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQ-VVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQ------ 332 (430)
Q Consensus 260 ~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------ 332 (430)
... .......++|+|+++.|+++....+.|..|++..... ....+.. ... ...++++++|++.++...
T Consensus 180 ~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~---~~g-P~gi~~d~~G~l~va~~~~~~~~~ 254 (322)
T 2fp8_A 180 LLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK---IPN-PGNIKRNADGHFWVSSSEELDGNM 254 (322)
T ss_dssp EEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE---CSS-EEEEEECTTSCEEEEEEEETTSST
T ss_pred ecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe---CCC-CCCeEECCCCCEEEEecCcccccc
Confidence 322 2234578999999998887764678999999875311 0111111 112 677899999987666544
Q ss_pred ----CCcEEEEEcCCCCeeccccccc----CCeeEEEEcCCCcEEEEeeCCc
Q 014125 333 ----DGLVHIYDLQTGKWISGFQAAA----DTVNGFSFHPFLPMAASSSGHR 376 (430)
Q Consensus 333 ----dg~i~vwd~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~s~~~d~ 376 (430)
.+.|..+|.. ++.+..+.... ..++.+++ .++.+.++....+
T Consensus 255 ~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~ 304 (322)
T 2fp8_A 255 HGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHG 304 (322)
T ss_dssp TSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCS
T ss_pred cCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCC
Confidence 4668888864 77666554332 34566666 3555555544333
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.6e-06 Score=75.99 Aligned_cols=259 Identities=11% Similarity=-0.010 Sum_probs=155.3
Q ss_pred CCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCc
Q 014125 60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC 139 (430)
Q Consensus 60 ~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (430)
.+..+|.+..+++ +|+.+.. ..|+..++..... ............++|.+ .++.
T Consensus 33 ~d~~~C~~~~~~~-~ll~~~~-~~I~~i~~~g~~~------------------~~~~~~~~~~~~l~~d~------~~~~ 86 (349)
T 3v64_C 33 PDRRSCKALGPEP-VLLFANR-IDIRQVLPHRSEY------------------TLLLNNLENAIALDFHH------RREL 86 (349)
T ss_dssp TTSSCEEESSSCC-EEEEECB-SCEEEECTTSCCE------------------EEEECSCSCEEEEEEET------TTTE
T ss_pred CCCCcccccccCc-eeEeecc-cceEEEeCCCCee------------------EEeecCCCceEEEEEec------cccE
Confidence 4456677777754 4443333 4577777754321 11222234567888843 1344
Q ss_pred eEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCCcccccccccCC
Q 014125 140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYSTLKGN 217 (430)
Q Consensus 140 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~~~~~~~~~~ 217 (430)
++++-...+.|..+++..+.......... .....+++.+.+..|+ +. ..+.|.+.+++..... .+.
T Consensus 87 ly~~D~~~~~I~r~~~~g~~~~~~~~~~~-----~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~-----~l~-- 154 (349)
T 3v64_C 87 VFWSDVTLDRILRANLNGSNVEEVVSTGL-----ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK-----VLL-- 154 (349)
T ss_dssp EEEEETTTTEEEEEETTSCSCEEEECSSC-----SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-----EEE--
T ss_pred EEEEeccCCceEEEecCCCCceEEEeCCC-----CCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceE-----EEE--
Confidence 55555567889999987765433332211 1456889988666555 44 5678999988643211 111
Q ss_pred CCCCCcceEEEEEcCCCCceEEEecCC-CeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCC
Q 014125 218 KEGQAGIMSAIAFSPTHTGMLAIGSYS-QTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR 296 (430)
Q Consensus 218 ~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~ 296 (430)
.........++++|.++.++++-... +.|..+++............-.....|+++|++..|+.+....+.|..+|+.
T Consensus 155 -~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~d 233 (349)
T 3v64_C 155 -WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD 233 (349)
T ss_dssp -CTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred -eCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence 11223468999999667667766666 8899998875433322222234578999999888888887677899999987
Q ss_pred CCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEE
Q 014125 297 KAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSF 362 (430)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 362 (430)
...... .. .........+++. .+...++-...+.|..++..+++.+..+........++++
T Consensus 234 G~~~~~-~~---~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v 294 (349)
T 3v64_C 234 GSHRKA-VI---SQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHT 294 (349)
T ss_dssp SCSCEE-EE---CSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEECSCSCCCCEEE
T ss_pred CCceEE-EE---eCCCCCceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEeccCCCCCceEEE
Confidence 643322 11 1123455667773 4555566666788999987777766665543333444443
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=99.04 E-value=7.4e-07 Score=76.78 Aligned_cols=226 Identities=14% Similarity=0.088 Sum_probs=137.6
Q ss_pred CeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcC--C-eE
Q 014125 120 ESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYN--K-SV 196 (430)
Q Consensus 120 ~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d--~-~i 196 (430)
.....++| +++++++++-..++.|..||.... ....+... ..+..+++.++++++++... + .|
T Consensus 32 ~~pegia~-------~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~~------~~p~gia~~~dG~l~vad~~~~~~~v 97 (306)
T 2p4o_A 32 TFLENLAS-------APDGTIFVTNHEVGEIVSITPDGN-QQIHATVE------GKVSGLAFTSNGDLVATGWNADSIPV 97 (306)
T ss_dssp CCEEEEEE-------CTTSCEEEEETTTTEEEEECTTCC-EEEEEECS------SEEEEEEECTTSCEEEEEECTTSCEE
T ss_pred CCcceEEE-------CCCCCEEEEeCCCCeEEEECCCCc-eEEEEeCC------CCceeEEEcCCCcEEEEeccCCcceE
Confidence 44566677 778887777778899999998653 33333321 16778999999997776532 2 46
Q ss_pred EEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCcee-eEEee---------cccc
Q 014125 197 RVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL-LYVLH---------GQEG 266 (430)
Q Consensus 197 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~-~~~~~---------~~~~ 266 (430)
..++...+. ....... ........++..+ ++..+++-..++.|+.+|..+++. +.... ....
T Consensus 98 ~~~d~~~g~--~~~~~~~-----~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~ 169 (306)
T 2p4o_A 98 VSLVKSDGT--VETLLTL-----PDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFP 169 (306)
T ss_dssp EEEECTTSC--EEEEEEC-----TTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSC
T ss_pred EEEcCCCCe--EEEEEeC-----CCccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCC
Confidence 666654422 1111111 1112234455555 555556555689999999875431 21111 0112
Q ss_pred CeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceE--EEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCC
Q 014125 267 GVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQV--VYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTG 344 (430)
Q Consensus 267 ~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 344 (430)
....+ +|+++.|+++....+.|..|++...... ...... ......++++++|++.++....+.|.++|.. +
T Consensus 170 ~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~----~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G 242 (306)
T 2p4o_A 170 AANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE----QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-R 242 (306)
T ss_dssp SEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE----SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-C
T ss_pred cCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec----cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-C
Confidence 34455 8899888888767889999998752111 011111 1234558899999887777778899999975 6
Q ss_pred Ce--ecccccccCCeeEEEEc---CCCcEEEEeeC
Q 014125 345 KW--ISGFQAAADTVNGFSFH---PFLPMAASSSG 374 (430)
Q Consensus 345 ~~--~~~~~~~~~~v~~~~~~---~~~~~l~s~~~ 374 (430)
+. +..+.......++++|. |++..|..++.
T Consensus 243 ~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 243 STTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN 277 (306)
T ss_dssp CEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred CEEEEeecccccCCceEEEEecccCCCCEEEEECC
Confidence 65 32344333568999998 88776666554
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.1e-06 Score=78.22 Aligned_cols=257 Identities=11% Similarity=-0.013 Sum_probs=154.3
Q ss_pred ceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceE
Q 014125 62 FLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF 141 (430)
Q Consensus 62 ~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 141 (430)
.-+|.+..+.+ +|+.+.. ..|+..++..... ............++|.+ .++.++
T Consensus 78 ~~~C~~~~~~~-~l~~~~~-~~I~~i~~~~~~~------------------~~~~~~~~~~~gl~~d~------~~~~ly 131 (386)
T 3v65_B 78 RRSCKALGPEP-VLLFANR-IDIRQVLPHRSEY------------------TLLLNNLENAIALDFHH------RRELVF 131 (386)
T ss_dssp SSCEEECSSCC-EEEEECB-SCEEEECTTSCCC------------------EEEECSCSCEEEEEEET------TTTEEE
T ss_pred CCeECCccccc-eeEeecC-ccceeeccCCCcE------------------EEEecCCCccEEEEEec------CCCeEE
Confidence 34555555543 4444333 4677777764321 11222234567888843 134455
Q ss_pred EEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCCcccccccccCCCC
Q 014125 142 ASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKE 219 (430)
Q Consensus 142 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~ 219 (430)
++-...+.|..+++..+.....+..... ....+++.+.+..|+ +. ..+.|.+.+++.... .. +. .
T Consensus 132 ~~D~~~~~I~r~~~~g~~~~~~~~~~~~-----~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~--~~---l~---~ 198 (386)
T 3v65_B 132 WSDVTLDRILRANLNGSNVEEVVSTGLE-----SPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR--KV---LL---W 198 (386)
T ss_dssp EEETTTTEEEEEETTSCCEEEEECSSCS-----CCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC--EE---EE---C
T ss_pred EEeCCCCcEEEEecCCCCcEEEEeCCCC-----CccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce--EE---ee---c
Confidence 5556678899999877654333322111 445788887666655 44 567788887754211 11 10 1
Q ss_pred CCCcceEEEEEcCCCCceEEEecCC-CeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCC
Q 014125 220 GQAGIMSAIAFSPTHTGMLAIGSYS-QTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKA 298 (430)
Q Consensus 220 ~~~~~v~~~~~~~~~~~~l~~~~~d-g~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~ 298 (430)
........++++|.++.++++-... +.|..+++............-.....|+|+|++..|+.+....+.|..+|+...
T Consensus 199 ~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~ 278 (386)
T 3v65_B 199 QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS 278 (386)
T ss_dssp SSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSC
T ss_pred CCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence 1224578999999666666665555 789999987543333333233457899999988888888767789999998764
Q ss_pred ceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEE
Q 014125 299 VQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSF 362 (430)
Q Consensus 299 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 362 (430)
.... .. .........+++ ..+.++++-...+.|..++..+++.+..+........+|++
T Consensus 279 ~~~~-~~---~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v 337 (386)
T 3v65_B 279 HRKA-VI---SQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHT 337 (386)
T ss_dssp SCEE-EE---CSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEECSCSCCCCEEE
T ss_pred eeEE-EE---ECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEccCCCCCceEEE
Confidence 3322 11 122345567777 34555666667788999997778776666544344455544
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=5.1e-06 Score=81.68 Aligned_cols=287 Identities=8% Similarity=0.051 Sum_probs=172.3
Q ss_pred CCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCc
Q 014125 60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC 139 (430)
Q Consensus 60 ~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (430)
...|.++...++|.+.+....+| +.+||..+++......... .. .......|.++.. .++|.
T Consensus 214 ~~~i~~i~~d~~g~lwigt~~~G-l~~~~~~~~~~~~~~~~~~-------~~---~~l~~~~i~~i~~-------d~~g~ 275 (795)
T 4a2l_A 214 TKQIQAILQQSPTRIWVATEGAG-LFLINPKTKEIKNYLHSPS-------NP---KSISSNYIRSLAM-------DSQNR 275 (795)
T ss_dssp CCCEEEEEEEETTEEEEEEBSSC-EEEEETTTTEEEEECCCTT-------CT---TSCSCSBEEEEEE-------CTTSC
T ss_pred CCeeEEEEEcCCCCEEEEECCCC-eEEEeCCCCeEEEeecCCC-------Cc---cccCCCeEEEEEE-------cCCCC
Confidence 45688888888887655433344 8888876543211000000 00 0011246888876 55666
Q ss_pred eEEEEeCCCcEEEEeccCCceeeeeeccc--ccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccCC
Q 014125 140 VFASTTRDHPIHLWDATTGLLRCTYRAYD--AVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGN 217 (430)
Q Consensus 140 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~ 217 (430)
+.+ |+.+| |.+|+..+++......... ..-....|.++...++|.+.+++.++-|..|+..... +.........
T Consensus 276 lWi-gt~~G-l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~--~~~~~~~~~~ 351 (795)
T 4a2l_A 276 LWI-GTFND-LNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNR--FKNIRNIPYK 351 (795)
T ss_dssp EEE-EESSC-EEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGS--SEEECCCTTS
T ss_pred EEE-EeCCh-hheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCccc--ceEEcCCCCC
Confidence 544 44555 8999987775443322111 0011237899999999998888887889999865421 1111111101
Q ss_pred CCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeec--------cccCeEEEEEccCCCEEEEEecCCCe
Q 014125 218 KEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG--------QEGGVTHVQFSRDGNYLYTGGRKDPY 289 (430)
Q Consensus 218 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~--------~~~~i~~~~~~~~~~~l~~~~~~d~~ 289 (430)
..-....|.++...+ .+ .|.+|+.++-|..|+..+++....... ....|.++...++|..|.+++ .++-
T Consensus 352 ~~l~~~~V~~i~~d~-~g-~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt-~~~G 428 (795)
T 4a2l_A 352 NSLSDNVVSCIVEDK-DK-NLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGT-HAGG 428 (795)
T ss_dssp SSCSCSSEEEEEECT-TS-CEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEE-TTTE
T ss_pred CCCCCCeeEEEEECC-CC-CEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEe-CcCc
Confidence 111235688998877 33 466688888899999877654332211 135689999988888566676 6778
Q ss_pred EEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccc------cccCCeeEEEEc
Q 014125 290 ILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQ------AAADTVNGFSFH 363 (430)
Q Consensus 290 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~------~~~~~v~~~~~~ 363 (430)
|..||..++................|.++...++|.+.+.. .+ -+.+||..+++...... .....|.++...
T Consensus 429 l~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d 506 (795)
T 4a2l_A 429 LSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-LS-ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRD 506 (795)
T ss_dssp EEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-SS-CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEEC
T ss_pred eeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-cC-ceeEEeCCCCeEEEccccccccccCCceEEEEEEC
Confidence 99999887643221110111234578899988888765544 44 48899988765432221 123568999999
Q ss_pred CCCcEEEEee
Q 014125 364 PFLPMAASSS 373 (430)
Q Consensus 364 ~~~~~l~s~~ 373 (430)
++|.+.+...
T Consensus 507 ~~g~lWigt~ 516 (795)
T 4a2l_A 507 SHKRLWIGGE 516 (795)
T ss_dssp TTCCEEEEES
T ss_pred CCCCEEEEeC
Confidence 9888776554
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.03 E-value=6e-10 Score=98.86 Aligned_cols=256 Identities=11% Similarity=0.049 Sum_probs=132.4
Q ss_pred CCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcE
Q 014125 71 DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPI 150 (430)
Q Consensus 71 ~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i 150 (430)
++..+++++.||.|+.||..+++....... ..+.+..+ ..++..+++++.||.|
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-------------------~~~~s~p~-------~~~g~~~v~~s~dg~l 61 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-------------------DPVLQVPT-------HVEEPAFLPDPNDGSL 61 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC-------------------CCSCCCC------------CCEEECTTTCCE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC-------------------CCceecce-------EcCCCEEEEeCCCCEE
Confidence 567899999999999999988854322111 12222211 3467788888999999
Q ss_pred EEEeccCCceeeeeecccccccccceE-EEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEE
Q 014125 151 HLWDATTGLLRCTYRAYDAVDEITAAF-SVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIA 229 (430)
Q Consensus 151 ~vwd~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 229 (430)
+.||..+|+.+..+...... .+. +..+..++..++++.++.|+.||..++...+.. ..+. ...
T Consensus 62 ~a~d~~tG~~~w~~~~~~~~----~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~--------~~~~----~~~ 125 (369)
T 2hz6_A 62 YTLGSKNNEGLTKLPFTIPE----LVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTL--------SSAF----ADS 125 (369)
T ss_dssp EEC-----CCSEECSCCHHH----HHTTCSCC-----CCCCEEEEEEEEECCC---------------------------
T ss_pred EEEECCCCceeeeeeccCcc----ccccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEe--------cCCC----ccc
Confidence 99999998876665433210 000 111112344444568899999999875433221 1111 134
Q ss_pred EcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCC---CEEEEEecCCCeEEEEeCCCCceEEEEee
Q 014125 230 FSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDG---NYLYTGGRKDPYILCWDLRKAVQVVYKLY 306 (430)
Q Consensus 230 ~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~~d~~i~i~d~~~~~~~~~~~~ 306 (430)
++| .+..+++++.++.|+.||.++++.+..+..+. ....+++++. ..+++++ .||.|+.||.++++......
T Consensus 126 ~~p-~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~-~dg~v~a~d~~tG~~~W~~~- 200 (369)
T 2hz6_A 126 LSP-STSLLYLGRTEYTITMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSN-GDGLVVTVDSESGDVLWIQN- 200 (369)
T ss_dssp --------EEEEEEEEEEECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEE-TSCEEEEECTTTCCEEEEEE-
T ss_pred ccc-cCCEEEEEecCCEEEEEECCCCCEEEeEeccc--ccCccccCCccccceEEEEC-CCCEEEEEECCCCcEEEEec-
Confidence 456 55688888999999999999998776655322 2233344432 4577777 89999999999886543221
Q ss_pred cccCCccce-EEEEEcCCCCEE----EEEccCCcEEEEEcCCCC----eecccccccCCeeEEEEcCCCcEEEEeeCCce
Q 014125 307 RSSEHTNQR-ILFDIEPSGRHL----GTGGQDGLVHIYDLQTGK----WISGFQAAADTVNGFSFHPFLPMAASSSGHRR 377 (430)
Q Consensus 307 ~~~~~~~~v-~~~~~~~~~~~l----~~~~~dg~i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~ 377 (430)
...++ ....++++|... +.+ ++.++.+|..+|+ .+..+... +.+. ...-.+..|+.++.+|.
T Consensus 201 ----~~~pv~~~~~~~~dg~~~v~~~~~~--~~~l~~ld~~tG~~~~~~~W~~~~~-~~~~--sp~~~~g~lyv~~~~G~ 271 (369)
T 2hz6_A 201 ----YASPVVAFYVWQREGLRKVMHINVA--VETLRYLTFMSGEVGRITKWKYPFP-KETE--AKSKLTPTLYVGKYSTS 271 (369)
T ss_dssp ----CSSCEEEEEECTTSSCEEECCEEEE--HHHHHHHHHHHHHHHHHHTSCCCCC-CHHH--HHHHSEEEECBEECSSC
T ss_pred ----CCCceEEEEEecCCceEeccceeec--ccceeeeehhcCCcccceeeeeccC-cccc--ccccccceEEEecccCC
Confidence 22333 334455565432 122 3346666666665 43333211 1111 00013456666777777
Q ss_pred eeecC
Q 014125 378 FPVDD 382 (430)
Q Consensus 378 ~~vw~ 382 (430)
+...+
T Consensus 272 l~al~ 276 (369)
T 2hz6_A 272 LYASP 276 (369)
T ss_dssp EECCE
T ss_pred EEecC
Confidence 77664
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=3.1e-06 Score=83.23 Aligned_cols=279 Identities=11% Similarity=0.108 Sum_probs=167.2
Q ss_pred eeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEE
Q 014125 63 LKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFA 142 (430)
Q Consensus 63 v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 142 (430)
|.++...++|.+.+ ++.++-+..|+..+++..... .......|.++.. .+++.+.+
T Consensus 175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~----------------~~~~~~~i~~i~~-------d~~g~lwi 230 (795)
T 4a2l_A 175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKVI----------------PILGTKQIQAILQ-------QSPTRIWV 230 (795)
T ss_dssp CEEEEEEETTEEEE-EESSSCEEEEETTTCCEEECC--------------------CCCEEEEEE-------EETTEEEE
T ss_pred eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEec----------------CCCCCCeeEEEEE-------cCCCCEEE
Confidence 88888888886655 555445888887655321100 0012345666665 34555444
Q ss_pred EEeCCCcEEEEeccCCceeeeeeccc--ccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCccccccccc-CCCC
Q 014125 143 STTRDHPIHLWDATTGLLRCTYRAYD--AVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLK-GNKE 219 (430)
Q Consensus 143 ~~~~dg~i~vwd~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~-~~~~ 219 (430)
++.++-+..||..+++......... ..-....|.++...++|.+.+++.+ -|.+|+..... +....... ....
T Consensus 231 -gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~--~~~~~~~~~~~~~ 306 (795)
T 4a2l_A 231 -ATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTFN-DLNIYHEGTDS--FASYSSNPVENGS 306 (795)
T ss_dssp -EEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEESS-CEEEEETTTTE--EEEECCCTTSTTS
T ss_pred -EECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeCC-hhheEcCCCCe--EEEEecCCCCCCC
Confidence 4444349999987765443222110 0011236899999999988877655 68888875421 11111000 0111
Q ss_pred CCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEee------ccccCeEEEEEccCCCEEEEEecCCCeEEEE
Q 014125 220 GQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH------GQEGGVTHVQFSRDGNYLYTGGRKDPYILCW 293 (430)
Q Consensus 220 ~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~ 293 (430)
-....|.++...++ + .|.+|+.++-|..|+..+........ .....|.++...++|.. ..++ .++-|..|
T Consensus 307 l~~~~i~~i~~D~~-g-~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~l-WiGt-~~~Gl~~~ 382 (795)
T 4a2l_A 307 LSQRSVRSIFMDSQ-G-GMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNL-WIGT-NDGGLNLY 382 (795)
T ss_dssp CSSSCEEEEEECTT-S-CEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCE-EEEE-SSSCEEEE
T ss_pred CCCCcEEEEEEeCC-c-CEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCE-EEEE-CCCCeEEE
Confidence 23356999998873 3 46667777889999876554322111 02346899999888874 4566 67779999
Q ss_pred eCCCCceEEEEeec---c-cCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccc----cccCCeeEEEEcCC
Q 014125 294 DLRKAVQVVYKLYR---S-SEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQ----AAADTVNGFSFHPF 365 (430)
Q Consensus 294 d~~~~~~~~~~~~~---~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~----~~~~~v~~~~~~~~ 365 (430)
|..+.......... . .-....|.++...++|+.|..|+.++-|.+||..+++...... .....|.++...++
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~ 462 (795)
T 4a2l_A 383 NPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGE 462 (795)
T ss_dssp CTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSS
T ss_pred cCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCC
Confidence 98765322211110 0 1124678899988888856667777779999998876433211 23457899999988
Q ss_pred CcEEEEee
Q 014125 366 LPMAASSS 373 (430)
Q Consensus 366 ~~~l~s~~ 373 (430)
+.+.+...
T Consensus 463 g~lwigt~ 470 (795)
T 4a2l_A 463 GNLWLGTL 470 (795)
T ss_dssp SCEEEEES
T ss_pred CCEEEEec
Confidence 88666554
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.99 E-value=4.5e-07 Score=82.97 Aligned_cols=228 Identities=11% Similarity=0.052 Sum_probs=140.7
Q ss_pred eEEEEeCCCcEEEEeccCCceeeeeeccccccc----------------------------------ccceEEEEECC--
Q 014125 140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDE----------------------------------ITAAFSVAFNP-- 183 (430)
Q Consensus 140 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~----------------------------------~~~v~~~~~~~-- 183 (430)
.|.+|+..|.++|+-+.+++.+..+........ .+.......|.
T Consensus 17 ~f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~ 96 (595)
T 1fwx_A 17 GFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTE 96 (595)
T ss_dssp EEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEET
T ss_pred EEeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCC
Confidence 477889999999999999887776554321100 01122344444
Q ss_pred ---CCcEEEEE--cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEE-c-CCCCceEEEe---------------
Q 014125 184 ---TGTKIFAG--YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAF-S-PTHTGMLAIG--------------- 241 (430)
Q Consensus 184 ---~~~~l~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~~~l~~~--------------- 241 (430)
||+++... .++.|.+.|+.+.. ....+ .. ........+++ . |+++ +++++
T Consensus 97 g~~DG~~lfVnd~~~~rVavIdl~t~~----~~~ii--~i-p~g~~phg~~~~~~p~~~-~v~~~~~~~~p~~~dg~~l~ 168 (595)
T 1fwx_A 97 GKYDGRFLFMNDKANTRVARVRCDVMK----CDAIL--EI-PNAKGIHGLRPQKWPRSN-YVFCNGEDETPLVNDGTNME 168 (595)
T ss_dssp TEEEEEEEEEEETTTTEEEEEETTTTE----EEEEE--EC-SSCCSEEEEEECCSSBCS-EEEEEECSCEESSCSSSSTT
T ss_pred CCcCCCEEEEEcCCCCEEEEEECCCce----EeeEE--eC-CCCCCCcceeeeecCCCc-EEEEecccccccCCCCcccc
Confidence 78888854 56779999997631 11111 11 11123677777 4 7444 55555
Q ss_pred ---cCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCC------------------------------
Q 014125 242 ---SYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDP------------------------------ 288 (430)
Q Consensus 242 ---~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~------------------------------ 288 (430)
..++.+.+.|..+.+....+..-. ....++++|+|+++++++ .+.
T Consensus 169 ~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~-~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~ 246 (595)
T 1fwx_A 169 DVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTS-YNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIA 246 (595)
T ss_dssp CGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEE-SCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHH
T ss_pred cccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEe-cCcccCcchhhccccccceEEEeeccceeEecc
Confidence 345689999999998888876432 457788999999999988 332
Q ss_pred --------eEEEEeCCC--CceEEEEeecccCCccceEEEEEcCCCCEEEEEc-cCCcEEEEEcCCCC------------
Q 014125 289 --------YILCWDLRK--AVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGG-QDGLVHIYDLQTGK------------ 345 (430)
Q Consensus 289 --------~i~i~d~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~------------ 345 (430)
.|.+.|.++ .......+. -.....++.++|||+++++++ .+.+|.++|+.+.+
T Consensus 247 ~Gk~~~i~~V~VID~~~~~~~~~~~~Ip----vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~ 322 (595)
T 1fwx_A 247 AGDYQELNGVKVVDGRKEASSLFTRYIP----IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSA 322 (595)
T ss_dssp HTCSEEETTEEEEECSGGGCCSSEEEEE----EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGG
T ss_pred CCCeeEECcEEEEeCcccCCceeEEEEe----cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccc
Confidence 355566655 221111111 112334589999999876655 57889999999653
Q ss_pred eecccccccCCeeEEEEcCCCcEEEEeeCCceeeecC
Q 014125 346 WISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDD 382 (430)
Q Consensus 346 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~ 382 (430)
.+..+. -......++|+|+|...++.--|+.+.+|+
T Consensus 323 v~~~v~-vG~gP~h~aF~~dG~aY~t~~ldsqV~kwd 358 (595)
T 1fwx_A 323 VVAEPE-LGLGPLHTAFDGRGNAYTSLFLDSQVVKWN 358 (595)
T ss_dssp EEECCB-CCSCEEEEEECTTSEEEEEETTTTEEEEEE
T ss_pred eEEEcC-CCCCcceEEECCCCeEEEEEecCCcEEEEE
Confidence 222332 224678999999994334444344444443
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.98 E-value=1.2e-07 Score=77.56 Aligned_cols=193 Identities=7% Similarity=0.077 Sum_probs=122.1
Q ss_pred cceeecccCCC--ceeEEEECcCCceEEEecCCC--eEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeee
Q 014125 51 NQFRTSSIPNN--FLKGIKWSPDGSSFLTSSEDK--TLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFC 126 (430)
Q Consensus 51 ~~~~~~~~h~~--~v~~~~~sp~~~~l~s~~~dg--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 126 (430)
+.++.+ .|.. ....+.|+ ++.++.+.+.+| .|+++|+.+++......... .----.++
T Consensus 32 ~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~----------------~~FgeGit 93 (262)
T 3nol_A 32 QIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK----------------RYFGEGIS 93 (262)
T ss_dssp EEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT----------------TCCEEEEE
T ss_pred EEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC----------------ccceeEEE
Confidence 344444 4443 45889998 677777777776 89999999886543332110 00001122
Q ss_pred eccccCccCCCC-ceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCC
Q 014125 127 WFPHMSASDPTS-CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRP 204 (430)
Q Consensus 127 ~~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~ 204 (430)
. ++ .+.+....++.+.++|..+.+.+.++.... .-..++ +++..|+.+ .++.|.++|..+.
T Consensus 94 ~---------~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~------eG~glt--~dg~~L~~SdGs~~i~~iDp~T~ 156 (262)
T 3nol_A 94 D---------WKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDG------EGWGLT--HNDQYLIMSDGTPVLRFLDPESL 156 (262)
T ss_dssp E---------ETTEEEEEESSSSEEEEEETTTCCEEEEEECSS------CCCCEE--ECSSCEEECCSSSEEEEECTTTC
T ss_pred E---------eCCEEEEEEeeCCEEEEEECccCcEEEEEECCC------CceEEe--cCCCEEEEECCCCeEEEEcCCCC
Confidence 1 23 333444468899999999999999888643 223444 567777654 5778999998763
Q ss_pred CCcccccccccCCCCCCC-cceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeecc------------ccCeEEE
Q 014125 205 GRDFEKYSTLKGNKEGQA-GIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ------------EGGVTHV 271 (430)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~------------~~~i~~~ 271 (430)
... ..+.-...+.. ..++.+.|. ++.+++..-.+..|.+.|.++++.+..+... ..-.+.|
T Consensus 157 ~v~----~~I~V~~~g~~~~~lNELe~~--~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGI 230 (262)
T 3nol_A 157 TPV----RTITVTAHGEELPELNELEWV--DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGI 230 (262)
T ss_dssp SEE----EEEECEETTEECCCEEEEEEE--TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEE
T ss_pred eEE----EEEEeccCCccccccceeEEE--CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEE
Confidence 211 11111111111 234557776 4456666667899999999999988777632 1245899
Q ss_pred EEccCCCEEEEEe
Q 014125 272 QFSRDGNYLYTGG 284 (430)
Q Consensus 272 ~~~~~~~~l~~~~ 284 (430)
+|+|+++.|++++
T Consensus 231 A~dp~~~~lfVTG 243 (262)
T 3nol_A 231 AWDKEHHRLFVTG 243 (262)
T ss_dssp EEETTTTEEEEEE
T ss_pred EEcCCCCEEEEEC
Confidence 9999999999988
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.98 E-value=8.4e-08 Score=91.85 Aligned_cols=293 Identities=12% Similarity=0.067 Sum_probs=166.1
Q ss_pred CceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEE
Q 014125 72 GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIH 151 (430)
Q Consensus 72 ~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 151 (430)
+..|+.++.++.|.-+|..+++..-........ ...........-..+.. .+..++.++.|+.|.
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~------~~~~~~~~~~~~~~~~~---------~~~~v~v~~~dg~l~ 130 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAK------VKARTSCCDAVNRGVAL---------WGDKVYVGTLDGRLI 130 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCG------GGGGGCTTCSCCCCCEE---------EBTEEEEECTTSEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCc------cccccccccCCccceEE---------ECCEEEEEcCCCEEE
Confidence 456677777889999999888664332211100 00000000000001111 355788888999999
Q ss_pred EEeccCCceeeeeecccccccccceEE-EEECCCCcEEEEEc------CCeEEEEEcCCCCCcccccccccCCCC-----
Q 014125 152 LWDATTGLLRCTYRAYDAVDEITAAFS-VAFNPTGTKIFAGY------NKSVRVFDVHRPGRDFEKYSTLKGNKE----- 219 (430)
Q Consensus 152 vwd~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~------d~~i~v~d~~~~~~~~~~~~~~~~~~~----- 219 (430)
.+|..+|+.+..+....... ...+.+ ... .++..++... ++.|..+|..++...+...........
T Consensus 131 alD~~tG~~~W~~~~~~~~~-~~~~~~~P~v-~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~ 208 (668)
T 1kv9_A 131 ALDAKTGKAIWSQQTTDPAK-PYSITGAPRV-VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHP 208 (668)
T ss_dssp EEETTTCCEEEEEECSCTTS-SCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSH
T ss_pred EEECCCCCEeeeeccCCCCC-cceecCCCEE-ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCcccccc
Confidence 99999999988876532100 001111 011 1454444322 588999999876554432211000000
Q ss_pred ------------------CCCcceEEEEEcCCCCceEEEecCCC-------------------eEEEEEcCCceeeEEee
Q 014125 220 ------------------GQAGIMSAIAFSPTHTGMLAIGSYSQ-------------------TSAIYREDNMELLYVLH 262 (430)
Q Consensus 220 ------------------~~~~~v~~~~~~~~~~~~l~~~~~dg-------------------~v~~~d~~~~~~~~~~~ 262 (430)
+.......++++| ...++++++.++ .|..+|.++++.+..++
T Consensus 209 ~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~ 287 (668)
T 1kv9_A 209 ELREAAKTWQGDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQ 287 (668)
T ss_dssp HHHHHHTTCCSSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEE
T ss_pred ccccccccCCccceeeeCCCCccccceEEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEee
Confidence 0111223468888 455777777666 49999999999888776
Q ss_pred c--cc-------cCeEEEEEccCCC---EEEEEecCCCeEEEEeCCCCceEEEEeecc-------c-CCccc--------
Q 014125 263 G--QE-------GGVTHVQFSRDGN---YLYTGGRKDPYILCWDLRKAVQVVYKLYRS-------S-EHTNQ-------- 314 (430)
Q Consensus 263 ~--~~-------~~i~~~~~~~~~~---~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~-------~-~~~~~-------- 314 (430)
. |. .+.....+..+|+ .++.++ .+|.++++|..+++......... . ....+
T Consensus 288 ~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~-~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~ 366 (668)
T 1kv9_A 288 VTPGDSWDFTATQQITLAELNIDGKPRKVLMQAP-KNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRY 366 (668)
T ss_dssp SSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECC-TTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTC
T ss_pred cCCCccccccCCCCcEEEEeccCCcEEEEEEEEC-CCCEEEEEECCCCCEeccccccccccccccccccCCccccccccc
Confidence 4 22 2222233334665 577777 89999999999886542211100 0 00000
Q ss_pred ----------------eEEEEEcCCCCEEEEE------------------------------------ccCCcEEEEEcC
Q 014125 315 ----------------RILFDIEPSGRHLGTG------------------------------------GQDGLVHIYDLQ 342 (430)
Q Consensus 315 ----------------v~~~~~~~~~~~l~~~------------------------------------~~dg~i~vwd~~ 342 (430)
-..++++|+...++.. ..+|.|..||+.
T Consensus 367 ~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~ 446 (668)
T 1kv9_A 367 EKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPV 446 (668)
T ss_dssp SSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETT
T ss_pred cCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCC
Confidence 0125677776655431 134789999999
Q ss_pred CCCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCCC
Q 014125 343 TGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFE 384 (430)
Q Consensus 343 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~ 384 (430)
+++.+.....+ .+.....+...+.+++.++.|+.++++|..
T Consensus 447 tG~~~W~~~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~ 487 (668)
T 1kv9_A 447 KQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSAD 487 (668)
T ss_dssp TTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred CCcEEEEccCC-CCCcCceeEeCCCEEEEECCcccchhhhhh
Confidence 99988777643 334444455567888888888888887653
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.94 E-value=4.2e-08 Score=85.66 Aligned_cols=209 Identities=13% Similarity=0.091 Sum_probs=130.4
Q ss_pred eEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccCCCC
Q 014125 140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKE 219 (430)
Q Consensus 140 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~ 219 (430)
.+..++.++.|..|| .+++.......... .+.++...+++.+++++.+ |..+|. .+ ... ... .
T Consensus 32 ~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~-----~~~~~~~~~~g~l~v~t~~--l~~~d~-~g-~~~---~~~----~ 94 (330)
T 3hxj_A 32 TIYLGSSNKNLYAIN-TDGSVKWFFKSGEI-----IECRPSIGKDGTIYFGSDK--VYAINP-DG-TEK---WRF----D 94 (330)
T ss_dssp CEECSSTTTTTEEEC-TTSCEEESSCGGGE-----EEECCEETTTTEECCSSCE--EEEECC-CG-GGG---GGS----C
T ss_pred eEEEEcCCCEEEEEC-CCCcEEEEEecCCC-----cccceEEecCCcEEEecCc--EEEECC-CC-cEE---EEE----E
Confidence 566777888899999 88877655443222 4567777777765554433 777775 21 111 111 0
Q ss_pred CCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCc
Q 014125 220 GQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAV 299 (430)
Q Consensus 220 ~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~ 299 (430)
..........+. ...+.+++.++.|..+|.. ++...........+.++...+++. +++++ .++.|..+|.. +.
T Consensus 95 ~~~~~~~~~~~~---~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt-~~~~l~~~d~~-g~ 167 (330)
T 3hxj_A 95 TKKAIVSDFTIF---EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGS-NDNYLYAINPD-GT 167 (330)
T ss_dssp C-----CCEEEE---TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEEC-TTSEEEEECTT-SC
T ss_pred CCCCcccCceEE---CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEc-CCCEEEEECCC-CC
Confidence 111111222222 3367778889999999998 776666665555667777777776 55566 78999999998 54
Q ss_pred eEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCceee
Q 014125 300 QVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFP 379 (430)
Q Consensus 300 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~ 379 (430)
...... .....+.++...+++.+.+ ++ +.|..+| .+++.+..+......+.++...+++.+.+. +.++.+.
T Consensus 168 ~~~~~~----~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~-t~~~gl~ 238 (330)
T 3hxj_A 168 EKWRFK----TNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVT-SLDGHLY 238 (330)
T ss_dssp EEEEEE----CSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEE-ETTTEEE
T ss_pred EeEEEe----cCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEE-cCCCeEE
Confidence 332221 2233455667777777554 44 7799999 777777666655567888888888765554 4444444
Q ss_pred ec
Q 014125 380 VD 381 (430)
Q Consensus 380 vw 381 (430)
.+
T Consensus 239 ~~ 240 (330)
T 3hxj_A 239 AI 240 (330)
T ss_dssp EE
T ss_pred EE
Confidence 44
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.93 E-value=1.1e-06 Score=84.28 Aligned_cols=305 Identities=14% Similarity=0.084 Sum_probs=168.2
Q ss_pred CceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeC-----
Q 014125 72 GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTR----- 146 (430)
Q Consensus 72 ~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~----- 146 (430)
+..++.++.|+.|..+|..+++..-....... .....+.-.|. - .+..++++..
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~----------------~~~~~~~~~P~----v-~~~~v~vg~~~~~~~ 175 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDP----------------AKPYSITGAPR----V-VKGKVIIGNGGAEYG 175 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCT----------------TSSCBCCSCCE----E-ETTEEEECCBCTTTC
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCC----------------CCcceecCCCE----E-ECCEEEEeCCCCCcC
Confidence 45677888899999999998865433221100 00000000010 0 1224444433
Q ss_pred -CCcEEEEeccCCceeeeeecccccc--------------------------cccceEEEEECCCCcEEEEE-cCC----
Q 014125 147 -DHPIHLWDATTGLLRCTYRAYDAVD--------------------------EITAAFSVAFNPTGTKIFAG-YNK---- 194 (430)
Q Consensus 147 -dg~i~vwd~~~~~~~~~~~~~~~~~--------------------------~~~~v~~~~~~~~~~~l~~~-~d~---- 194 (430)
+|.|..+|..+|+.+..+....... .......++++|+...++.+ .++
T Consensus 176 ~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~ 255 (668)
T 1kv9_A 176 VRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWN 255 (668)
T ss_dssp CBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSC
T ss_pred CCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccc
Confidence 5889999999999988876421100 00011246888877777754 343
Q ss_pred ---------------eEEEEEcCCCCCcccccccccCCC-CCCCcceEEEEEcCCCC--ceEEEecCCCeEEEEEcCCce
Q 014125 195 ---------------SVRVFDVHRPGRDFEKYSTLKGNK-EGQAGIMSAIAFSPTHT--GMLAIGSYSQTSAIYREDNME 256 (430)
Q Consensus 195 ---------------~i~v~d~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~--~~l~~~~~dg~v~~~d~~~~~ 256 (430)
.|..+|..++...+.......... .....+.....+..++. ..++.++.+|.++++|..+++
T Consensus 256 ~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 335 (668)
T 1kv9_A 256 REVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGK 335 (668)
T ss_dssp HHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred cCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCC
Confidence 488888887654433211100000 00112222222222222 368899999999999999998
Q ss_pred eeEEeeccc------------cC------------------------eEEEEEccCCCEEEEEe----------------
Q 014125 257 LLYVLHGQE------------GG------------------------VTHVQFSRDGNYLYTGG---------------- 284 (430)
Q Consensus 257 ~~~~~~~~~------------~~------------------------i~~~~~~~~~~~l~~~~---------------- 284 (430)
.+....... .+ -..++++|+...+++..
T Consensus 336 ~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~ 415 (668)
T 1kv9_A 336 LISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVT 415 (668)
T ss_dssp EEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCC
T ss_pred EeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeecccccc
Confidence 874432111 00 01267788777666521
Q ss_pred -------------------cCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCC
Q 014125 285 -------------------RKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGK 345 (430)
Q Consensus 285 -------------------~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 345 (430)
..+|.|..||+.+++........ .......+...+.++++++.||.+++||.++++
T Consensus 416 ~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~-----~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~ 490 (668)
T 1kv9_A 416 RKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP-----THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGE 490 (668)
T ss_dssp CSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES-----SSCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred ccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC-----CCCcCceeEeCCCEEEEECCcccchhhhhhcCh
Confidence 02378999999998655433221 112222334457889999999999999999999
Q ss_pred eecccccccCCe-eEEEEcCCCc-EEEEeeC-CceeeecCC--CccccccCCCcEEEEeecc
Q 014125 346 WISGFQAAADTV-NGFSFHPFLP-MAASSSG-HRRFPVDDF--EDLHLSGDENCVSVWSFLY 402 (430)
Q Consensus 346 ~~~~~~~~~~~v-~~~~~~~~~~-~l~s~~~-d~~~~vw~~--~~l~~~~~d~~i~~w~~~~ 402 (430)
.+..++...+.. .-+.+..+|+ +++.++. ++..-.+-. ....-.+..+.|.++.+..
T Consensus 491 ~l~~~~~~~~~~~~p~~~~~~G~~yva~~~G~g~~~~~~~~~~~~~~~~~~~~~i~~~~l~g 552 (668)
T 1kv9_A 491 ALWQFEAQSGIVAAPMTFELAGRQYVAIMAGWGGVATLTGGESMNLPGMKNRSRLLVFALDG 552 (668)
T ss_dssp EEEEEECSSCCCSCCEEEEETTEEEEEEEECCCSHHHHHCCGGGGSTTCCCCCEEEEEEETC
T ss_pred hheEecCCCCcccCceEEEECCEEEEEEEecCCCccccccccccccccCCCCCeEEEEEcCc
Confidence 998887543211 2344445666 5555553 332222110 1112223456777776643
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.93 E-value=9.8e-06 Score=69.99 Aligned_cols=209 Identities=12% Similarity=0.017 Sum_probs=126.2
Q ss_pred CeeeeeeeccccCccCCCC-ceEEEEeCCCcEEEEeccC----CceeeeeecccccccccceEEEEECCCCcEEE-EE-c
Q 014125 120 ESVYDFCWFPHMSASDPTS-CVFASTTRDHPIHLWDATT----GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-Y 192 (430)
Q Consensus 120 ~~v~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~ 192 (430)
.....++| ++.+ .++++-...+.|..+++.. ......+... ...+..+++++.+..|+ +. .
T Consensus 30 ~~p~g~~~-------d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~-----~~~p~glavd~~~~~ly~~d~~ 97 (316)
T 1ijq_A 30 RNVVALDT-------EVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD-----IQAPDGLAVDWIHSNIYWTDSV 97 (316)
T ss_dssp SSEEEEEE-------ETTTTEEEEEETTTTEEEEEEC--------CEEEECSS-----CSCCCEEEEETTTTEEEEEETT
T ss_pred CceEEEEE-------EeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCC-----CCCcCEEEEeecCCeEEEEECC
Confidence 45677888 4444 4555556678899999876 2222222111 11456888987665555 44 6
Q ss_pred CCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCC-CeEEEEEcCCceeeEEeeccccCeEEE
Q 014125 193 NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS-QTSAIYREDNMELLYVLHGQEGGVTHV 271 (430)
Q Consensus 193 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~v~~~d~~~~~~~~~~~~~~~~i~~~ 271 (430)
.+.|.++++.... ... +. .........++++|.++.++++.... +.|..+++............-.....+
T Consensus 98 ~~~I~~~~~~g~~--~~~---~~---~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gl 169 (316)
T 1ijq_A 98 LGTVSVADTKGVK--RKT---LF---RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGI 169 (316)
T ss_dssp TTEEEEEETTSSS--EEE---EE---ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEE
T ss_pred CCEEEEEeCCCCc--eEE---EE---ECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEE
Confidence 7889999886421 111 11 11123568999999666666665443 789988886433222222223457899
Q ss_pred EEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccc
Q 014125 272 QFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQ 351 (430)
Q Consensus 272 ~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 351 (430)
+++|++..|+.+....+.|..+|+....... +............+++. .+.++++-...+.|..++..+++.+..+.
T Consensus 170 a~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~--~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 170 TLDLLSGRLYWVDSKLHSISSIDVNGGNRKT--ILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCEE--EEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EEeccCCEEEEEECCCCeEEEEecCCCceEE--EeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEEe
Confidence 9999888888887677899999997543322 11111223345667775 35566666677889999988887666554
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=1.1e-06 Score=82.34 Aligned_cols=273 Identities=14% Similarity=0.090 Sum_probs=152.6
Q ss_pred CceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeC-----
Q 014125 72 GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTR----- 146 (430)
Q Consensus 72 ~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~----- 146 (430)
+..++.++.|+.+..+|..+++..-....... . .... +.-.|. - .+..+++++.
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~-------~------~~~~---~~~~P~----v-~~g~v~vg~~~~~~~ 173 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDP-------K------VGST---LTQAPF----V-AKDTVLMGCSGAELG 173 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCG-------G------GTCB---CCSCCE----E-ETTEEEEECBCGGGT
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCC-------C------ccce---eccCCE----E-ECCEEEEEecCCccC
Confidence 44677778889999999988765432211100 0 0000 000110 0 1234555544
Q ss_pred -CCcEEEEeccCCceeeeeeccccccc--------------------------------cc-ceEEEEECCCCcEEEEEc
Q 014125 147 -DHPIHLWDATTGLLRCTYRAYDAVDE--------------------------------IT-AAFSVAFNPTGTKIFAGY 192 (430)
Q Consensus 147 -dg~i~vwd~~~~~~~~~~~~~~~~~~--------------------------------~~-~v~~~~~~~~~~~l~~~~ 192 (430)
++.|..+|..+|+.+..+........ .. ....+++.++...++.+.
T Consensus 174 ~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~ 253 (571)
T 2ad6_A 174 VRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGS 253 (571)
T ss_dssp CCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEEC
T ss_pred CCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEEC
Confidence 78999999999998887765322100 00 002356666655665432
Q ss_pred -C----------------CeEEEEEcCCCCCcccccccccC--CCCCCCcceEEEEEcCCCC--ceEEEecCCCeEEEEE
Q 014125 193 -N----------------KSVRVFDVHRPGRDFEKYSTLKG--NKEGQAGIMSAIAFSPTHT--GMLAIGSYSQTSAIYR 251 (430)
Q Consensus 193 -d----------------~~i~v~d~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~--~~l~~~~~dg~v~~~d 251 (430)
+ +.|..+|..++...+........ .......++. +...+++. .+++.++.+|.++++|
T Consensus 254 g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD 332 (571)
T 2ad6_A 254 GNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLN 332 (571)
T ss_dssp CCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEE
T ss_pred CCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEE
Confidence 1 35888888875443322111000 0001122222 22223232 4677889999999999
Q ss_pred cCCceeeEEeeccc-------------cCe--------------------------EEEEEccCCCEEEEEec-------
Q 014125 252 EDNMELLYVLHGQE-------------GGV--------------------------THVQFSRDGNYLYTGGR------- 285 (430)
Q Consensus 252 ~~~~~~~~~~~~~~-------------~~i--------------------------~~~~~~~~~~~l~~~~~------- 285 (430)
..+++.+....... .++ ..++++|+...+++...
T Consensus 333 ~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~ 412 (571)
T 2ad6_A 333 RENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWE 412 (571)
T ss_dssp TTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEE
T ss_pred CCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhcccccc
Confidence 99998876654211 111 24678888777777641
Q ss_pred -----------------------------CCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcE
Q 014125 286 -----------------------------KDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLV 336 (430)
Q Consensus 286 -----------------------------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 336 (430)
.+|.|..||+.+++........ ..+....+...+..++.++.||.|
T Consensus 413 ~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~-----~~~~~~~~~t~gg~v~~g~~dg~l 487 (571)
T 2ad6_A 413 PFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK-----FAAWGGTLYTKGGLVWYATLDGYL 487 (571)
T ss_dssp ECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES-----SCCCSBCEEETTTEEEEECTTSEE
T ss_pred ccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCC-----CCccceeEEECCCEEEEEcCCCeE
Confidence 2478999999988655433221 111111222245677889999999
Q ss_pred EEEEcCCCCeecccccccCC-eeEEEEcCCCcEEEE
Q 014125 337 HIYDLQTGKWISGFQAAADT-VNGFSFHPFLPMAAS 371 (430)
Q Consensus 337 ~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~s 371 (430)
+.+|.++++.+..++..... -.-+.+..+|+.++.
T Consensus 488 ~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~ 523 (571)
T 2ad6_A 488 KALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIG 523 (571)
T ss_dssp EEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred EEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEE
Confidence 99999999999888744321 122345567764443
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.90 E-value=4.5e-07 Score=74.11 Aligned_cols=183 Identities=13% Similarity=0.094 Sum_probs=117.3
Q ss_pred eEEEEECCCCcEEE-EEcCC--eEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEc
Q 014125 176 AFSVAFNPTGTKIF-AGYNK--SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRE 252 (430)
Q Consensus 176 v~~~~~~~~~~~l~-~~~d~--~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~ 252 (430)
...+.|+ ++.++. +|.+| .|+++|+.++.... .. .+ .....-..+++. +..+++..-.++.+.+||.
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~-~~-~l-----~~~~FgeGit~~--g~~ly~ltw~~~~v~v~D~ 114 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQ-QI-EL-----GKRYFGEGISDW--KDKIVGLTWKNGLGFVWNI 114 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEE-EE-EC-----CTTCCEEEEEEE--TTEEEEEESSSSEEEEEET
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEE-EE-ec-----CCccceeEEEEe--CCEEEEEEeeCCEEEEEEC
Confidence 4578888 565444 45555 89999998753211 11 11 111111234443 4556666667999999999
Q ss_pred CCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCC-ccceEEEEEcCCCCEEEEEc
Q 014125 253 DNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEH-TNQRILFDIEPSGRHLGTGG 331 (430)
Q Consensus 253 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~ 331 (430)
.+.+.+.++.... ....++++++.|+.+. .++.|.++|..+............+. -..++.+.|. +|+..+..-
T Consensus 115 ~t~~~~~ti~~~~---eG~glt~dg~~L~~Sd-Gs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w 189 (262)
T 3nol_A 115 RNLRQVRSFNYDG---EGWGLTHNDQYLIMSD-GTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVW 189 (262)
T ss_dssp TTCCEEEEEECSS---CCCCEEECSSCEEECC-SSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEET
T ss_pred ccCcEEEEEECCC---CceEEecCCCEEEEEC-CCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEc
Confidence 9999998887432 2233345788888877 68899999999875443222111111 1334557776 676665555
Q ss_pred cCCcEEEEEcCCCCeecccccc------------cCCeeEEEEcCCCcEEEEee
Q 014125 332 QDGLVHIYDLQTGKWISGFQAA------------ADTVNGFSFHPFLPMAASSS 373 (430)
Q Consensus 332 ~dg~i~vwd~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~l~s~~ 373 (430)
.++.|.+.|..+++.+..+... ....++|+|+|+++.|...+
T Consensus 190 ~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 190 QTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp TSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred cCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 6889999999999987766431 13568999999887666655
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.89 E-value=1.1e-05 Score=69.39 Aligned_cols=237 Identities=12% Similarity=0.087 Sum_probs=136.1
Q ss_pred CceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCce
Q 014125 61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV 140 (430)
Q Consensus 61 ~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (430)
.....++|+|+|+++++-..++.|..||...... ...........+++ ++++++
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~-------------------~~~~~~~~p~gia~-------~~dG~l 85 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQ-------------------IHATVEGKVSGLAF-------TSNGDL 85 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEE-------------------EEEECSSEEEEEEE-------CTTSCE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCceE-------------------EEEeCCCCceeEEE-------cCCCcE
Confidence 4577899999999777777889999998764210 11112235666777 778886
Q ss_pred EEEEeCCC--cEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccc-cccccC
Q 014125 141 FASTTRDH--PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEK-YSTLKG 216 (430)
Q Consensus 141 l~~~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~-~~~~~~ 216 (430)
+++..... .|..++..+++.......... .....++..+++..+++. .++.|.++|.......... ......
T Consensus 86 ~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~----~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~ 161 (306)
T 2p4o_A 86 VATGWNADSIPVVSLVKSDGTVETLLTLPDA----IFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLAR 161 (306)
T ss_dssp EEEEECTTSCEEEEEECTTSCEEEEEECTTC----SCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSC
T ss_pred EEEeccCCcceEEEEcCCCCeEEEEEeCCCc----cccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCcccc
Confidence 66554332 466677777765433332111 123345555555555555 5788888887542100000 000000
Q ss_pred -CCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCC-cee--eEEeeccccCeEEEEEccCCCEEEEEecCCCeEEE
Q 014125 217 -NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN-MEL--LYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILC 292 (430)
Q Consensus 217 -~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~-~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i 292 (430)
...........+ +|+++.++++-...+.|..|++.. ++. ...+. .......++++++|++.++.. ..+.|.+
T Consensus 162 ~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~l~va~~-~~~~V~~ 237 (306)
T 2p4o_A 162 SNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATH-IYNSVVR 237 (306)
T ss_dssp SSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECB-TTCCEEE
T ss_pred ccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCCEEEEeC-CCCeEEE
Confidence 001111234445 775666777777889999999874 321 11121 113457789999997655544 6789999
Q ss_pred EeCCCCceEEEEeecccCCccceEEEEEc---CCCCEEEEEccCC
Q 014125 293 WDLRKAVQVVYKLYRSSEHTNQRILFDIE---PSGRHLGTGGQDG 334 (430)
Q Consensus 293 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~l~~~~~dg 334 (430)
+|.. +... ............++++|. |+++.|+.++..+
T Consensus 238 ~~~~-G~~~--~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 238 IAPD-RSTT--IIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp ECTT-CCEE--EEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred ECCC-CCEE--EEeecccccCCceEEEEecccCCCCEEEEECCCC
Confidence 9975 3221 111112223567899998 8877776665543
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.87 E-value=8.8e-07 Score=84.96 Aligned_cols=275 Identities=12% Similarity=0.050 Sum_probs=147.3
Q ss_pred EEEECc-CCceEEEecCCC-----------eEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccC
Q 014125 65 GIKWSP-DGSSFLTSSEDK-----------TLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS 132 (430)
Q Consensus 65 ~~~~sp-~~~~l~s~~~dg-----------~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 132 (430)
++++.| +++.++.|+.+. .+.+||..++..... ......+.....++++
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~--------------~~~~~~~~~~~~~~~~----- 250 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDR--------------TVTVTKHDMFCPGISM----- 250 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCC--------------EEEECSCCCSSCEEEE-----
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeC--------------cccCCCCCCccccccC-----
Confidence 566677 888888887643 588899887643211 0010111111112333
Q ss_pred ccCCCCceEEEEeC-CCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE--cC-----CeEEEEEcCCC
Q 014125 133 ASDPTSCVFASTTR-DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG--YN-----KSVRVFDVHRP 204 (430)
Q Consensus 133 ~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~d-----~~i~v~d~~~~ 204 (430)
..++.+++.|+. +..+.+||..+++....-.... ...-.+++..+++++++.| .+ ..+.+||..+.
T Consensus 251 --~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~----~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~ 324 (656)
T 1k3i_A 251 --DGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQV----ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK 324 (656)
T ss_dssp --CTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSS----CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred --CCCCCEEEeCCCCCCceEEecCcCCceeECCCCCc----cccccceEEecCCeEEEEeCcccCCcccccceEeCCCCC
Confidence 457888998884 4589999998876544322111 1122355666788888854 23 57899998763
Q ss_pred CCcccccccc---cCCCCCCCcceEEEEEcCCCCceEEEecCC---------CeEEEEEcCCceeeEEeecccc------
Q 014125 205 GRDFEKYSTL---KGNKEGQAGIMSAIAFSPTHTGMLAIGSYS---------QTSAIYREDNMELLYVLHGQEG------ 266 (430)
Q Consensus 205 ~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---------g~v~~~d~~~~~~~~~~~~~~~------ 266 (430)
. +...... ......+. ..+.. ++.+++.|+.+ ..+..||..+.........+..
T Consensus 325 ~--W~~~~~~~~~p~~~~~~~-----~~~~~-~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~ 396 (656)
T 1k3i_A 325 T--WTSLPNAKVNPMLTADKQ-----GLYRS-DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAP 396 (656)
T ss_dssp E--EEEETTSCSGGGCCCCTT-----GGGTT-TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECC
T ss_pred c--ceeCCCcccccccccccc-----ceeec-CCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCC
Confidence 2 2111000 00000000 11222 34455555444 4567888877653332222211
Q ss_pred ---CeEEEEEcc-CCCEEEEEecCCC-----------eEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEc
Q 014125 267 ---GVTHVQFSR-DGNYLYTGGRKDP-----------YILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGG 331 (430)
Q Consensus 267 ---~i~~~~~~~-~~~~l~~~~~~d~-----------~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 331 (430)
.-.++.|.. +++.++.|+ .++ .|.+||..+..-.... .........-.++...|++++++.|+
T Consensus 397 ~~~~~~av~~~~~~~~i~v~GG-~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~-~~~mp~~R~~~~~~~l~~g~i~v~GG 474 (656)
T 1k3i_A 397 DAMCGNAVMYDAVKGKILTFGG-SPDYQDSDATTNAHIITLGEPGTSPNTVFA-SNGLYFARTFHTSVVLPDGSTFITGG 474 (656)
T ss_dssp CCBTCEEEEEETTTTEEEEECC-BSSSSSSBCCCCEEEEECCSTTSCCEEEEC-TTCCSSCCBSCEEEECTTSCEEEECC
T ss_pred CCCCCceEeccCCCCeEEEEeC-CCCCCCCCcCCcceEEEcCCCCCCCeeEEc-cCCCCCCcccCCeEECCCCCEEEECC
Confidence 234455543 566666665 432 6788888765432211 00111122223456678999999998
Q ss_pred cC-----------CcEEEEEcCCCCeec--ccccccCCeeEEEEcCCCcEEEEeeC
Q 014125 332 QD-----------GLVHIYDLQTGKWIS--GFQAAADTVNGFSFHPFLPMAASSSG 374 (430)
Q Consensus 332 ~d-----------g~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~s~~~ 374 (430)
.+ ..+.+||..+.+... .+...........+.|++++++.|+.
T Consensus 475 ~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 475 QRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp BSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred cccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 64 468999988765422 22211112234556799999999885
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=1.2e-06 Score=76.13 Aligned_cols=258 Identities=12% Similarity=0.067 Sum_probs=138.7
Q ss_pred ceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccc---cCcccceeeecCCCeeeeeeeccccCccCC-C
Q 014125 62 FLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKD---QDSYEASLVVTEGESVYDFCWFPHMSASDP-T 137 (430)
Q Consensus 62 ~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~ 137 (430)
...+++|+++|+++.++..++.|..|+..++.... +........ ..................+++ .+ +
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~-------~~~~ 91 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVD-FAYASPYWNKAFCENSTDAEKRPLCGRTYDISY-------NLQN 91 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEE-EEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEE-------ETTT
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEE-EecccccccccccccccchhccccCCCCceEEE-------cCCC
Confidence 35678999999988888889999999887543210 000000000 000000000000123556666 54 4
Q ss_pred CceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECC-CCcEEEEEc------------------CCeEEE
Q 014125 138 SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNP-TGTKIFAGY------------------NKSVRV 198 (430)
Q Consensus 138 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~------------------d~~i~v 198 (430)
++ |+.+...+.|..+|..++... .+..............+++.+ +|.+.++.. ++.|..
T Consensus 92 g~-l~v~d~~~~i~~~d~~~g~~~-~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~ 169 (322)
T 2fp8_A 92 NQ-LYIVDCYYHLSVVGSEGGHAT-QLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIK 169 (322)
T ss_dssp TE-EEEEETTTEEEEECTTCEECE-EEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEE
T ss_pred Cc-EEEEECCCCEEEEeCCCCEEE-EecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEE
Confidence 54 444544445888887655432 221111001112467899999 898777642 256777
Q ss_pred EEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCce--eeEEeeccccCeEEEEEccC
Q 014125 199 FDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME--LLYVLHGQEGGVTHVQFSRD 276 (430)
Q Consensus 199 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~--~~~~~~~~~~~i~~~~~~~~ 276 (430)
||..... ... ... .......++++|++..++++-...+.|.+|++.... ....+....+ ...++++++
T Consensus 170 ~d~~~~~--~~~---~~~----~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~ 239 (322)
T 2fp8_A 170 YDPSTKE--TTL---LLK----ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNAD 239 (322)
T ss_dssp EETTTTE--EEE---EEE----EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTT
T ss_pred EeCCCCE--EEE---ecc----CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCC
Confidence 7765421 110 000 012245689999554455665677899999987521 1111111223 788999999
Q ss_pred CCEEEEEecC----------CCeEEEEeCCCCceEEEEeecccCC-ccceEEEEEcCCCCEEEEEccCCcEEEEEcCC
Q 014125 277 GNYLYTGGRK----------DPYILCWDLRKAVQVVYKLYRSSEH-TNQRILFDIEPSGRHLGTGGQDGLVHIYDLQT 343 (430)
Q Consensus 277 ~~~l~~~~~~----------d~~i~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 343 (430)
|.+.++.. . .+.|..+|... .....+....+. ...+..+++ .++++.++....+.|.++++..
T Consensus 240 G~l~va~~-~~~~~~~~~~~~~~v~~~d~~G--~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 240 GHFWVSSS-EELDGNMHGRVDPKGIKFDEFG--NILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp SCEEEEEE-EETTSSTTSCEEEEEEEECTTS--CEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred CCEEEEec-CcccccccCCCccEEEEECCCC--CEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 98666554 3 46688888653 232233221111 234556665 3566666666778899998764
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.86 E-value=2.1e-05 Score=70.24 Aligned_cols=248 Identities=11% Similarity=0.026 Sum_probs=145.7
Q ss_pred eEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEE
Q 014125 74 SFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLW 153 (430)
Q Consensus 74 ~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vw 153 (430)
+|+.+.. ..|+..++..... .........+..++|.+. ++.++.+-...+.|+.+
T Consensus 85 ~ll~~~~-~~I~~i~l~~~~~------------------~~~~~~~~~~~~l~~d~~------~~~lywsD~~~~~I~~~ 139 (400)
T 3p5b_L 85 YLFFTNR-HEVRKMTLDRSEY------------------TSLIPNLRNVVALDTEVA------SNRIYWSDLSQRMICST 139 (400)
T ss_dssp EEEEEET-TEEEEECTTSCSC------------------EEEECSCSCEEEEEEETT------TTEEEEEETTTTEEEEE
T ss_pred eeEEecc-ceeEEEccCCcce------------------eEeccccCcceEEeeeec------cCceEEEecCCCeEEEE
Confidence 4444443 5788888875421 112223356778888431 34444555567788888
Q ss_pred eccCCc----eeeeeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEE
Q 014125 154 DATTGL----LRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSA 227 (430)
Q Consensus 154 d~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~ 227 (430)
++.... ....+... ......+++.+.+..|+ +. ..+.|.+.+++.... .. +. .........
T Consensus 140 ~~~g~~~~~~~~~~~~~~-----~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~--~~---l~---~~~~~~P~~ 206 (400)
T 3p5b_L 140 QLDRAHGVSSYDTVISRD-----IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR--KT---LF---RENGSKPRA 206 (400)
T ss_dssp EC------CCCEEEECSS-----CSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSE--EE---EE---ECSSCCEEE
T ss_pred EcccCCCCCcceEEEeCC-----CCCcccEEEEecCCceEEEECCCCeEEEEeCCCCce--EE---EE---eCCCCCcce
Confidence 886522 22222211 12567889988555555 44 567888888764211 11 10 112234789
Q ss_pred EEEcCCCCceEEEecC-CCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEee
Q 014125 228 IAFSPTHTGMLAIGSY-SQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLY 306 (430)
Q Consensus 228 ~~~~~~~~~~l~~~~~-dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~ 306 (430)
++++|.++.++.+-.. .+.|...++............-.....|++++++..|+.+....+.|..+|+........ .
T Consensus 207 iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~--~ 284 (400)
T 3p5b_L 207 IVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI--L 284 (400)
T ss_dssp EEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEE--E
T ss_pred EEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEE--E
Confidence 9999966655555433 478999998754433333333356789999998888888876778999999876533221 1
Q ss_pred cccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEE
Q 014125 307 RSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSF 362 (430)
Q Consensus 307 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 362 (430)
...........+++. .+.++++-...+.|..+|..+++.+..+........+++.
T Consensus 285 ~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~p~~i~v 339 (400)
T 3p5b_L 285 EDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVL 339 (400)
T ss_dssp ECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEECSCSCEEEEEE
T ss_pred eCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEecCCCCCceEEE
Confidence 112223345567663 3445556666788999998888777666544444455543
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.84 E-value=6.7e-06 Score=73.16 Aligned_cols=218 Identities=8% Similarity=-0.003 Sum_probs=136.3
Q ss_pred CCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCCcccccccccCCCCCCCc
Q 014125 146 RDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAG 223 (430)
Q Consensus 146 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 223 (430)
....|+.+++............. .+..++|++.+..|+ +. ..+.|..+++..... . .+. .....
T Consensus 94 ~~~~I~~i~~~~~~~~~~~~~~~------~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~--~---~~~---~~~~~ 159 (386)
T 3v65_B 94 NRIDIRQVLPHRSEYTLLLNNLE------NAIALDFHHRRELVFWSDVTLDRILRANLNGSNV--E---EVV---STGLE 159 (386)
T ss_dssp CBSCEEEECTTSCCCEEEECSCS------CEEEEEEETTTTEEEEEETTTTEEEEEETTSCCE--E---EEE---CSSCS
T ss_pred cCccceeeccCCCcEEEEecCCC------ccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCc--E---EEE---eCCCC
Confidence 34568888887765544433222 577899998766666 54 678899998865321 1 110 11112
Q ss_pred ceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCC-CeEEEEeCCCCceEE
Q 014125 224 IMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKD-PYILCWDLRKAVQVV 302 (430)
Q Consensus 224 ~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d-~~i~i~d~~~~~~~~ 302 (430)
....+++.+.+++++++-...+.|.+.++........+.........++++|.+..|+.+.... +.|..+++.......
T Consensus 160 ~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~ 239 (386)
T 3v65_B 160 SPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRI 239 (386)
T ss_dssp CCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE
T ss_pred CccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEE
Confidence 3466888876777778777788999998875443333333335678999999888887776445 789888887653322
Q ss_pred EEeecccCCccceEEEEEcCCCCEEEEE-ccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeec
Q 014125 303 YKLYRSSEHTNQRILFDIEPSGRHLGTG-GQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVD 381 (430)
Q Consensus 303 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw 381 (430)
. . .........++++|++..|..+ +..+.|..+|++.......+........+|++ ..+.++++-...+.|...
T Consensus 240 ~-~---~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~ 314 (386)
T 3v65_B 240 I-A---DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSA 314 (386)
T ss_dssp E-E---CSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEE
T ss_pred E-E---ECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEE
Confidence 1 1 1223456889999876655544 45678999998754333223323345677777 345555555555666554
Q ss_pred C
Q 014125 382 D 382 (430)
Q Consensus 382 ~ 382 (430)
+
T Consensus 315 ~ 315 (386)
T 3v65_B 315 N 315 (386)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.8e-05 Score=69.34 Aligned_cols=216 Identities=8% Similarity=-0.010 Sum_probs=134.6
Q ss_pred CCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCCcccccccccCCCCCCCcc
Q 014125 147 DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGI 224 (430)
Q Consensus 147 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 224 (430)
...|+..++............. .+..++|++.+..|+ +. ..+.|..+++...... . +. ......
T Consensus 52 ~~~I~~i~~~g~~~~~~~~~~~------~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~--~---~~---~~~~~~ 117 (349)
T 3v64_C 52 RIDIRQVLPHRSEYTLLLNNLE------NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE--E---VV---STGLES 117 (349)
T ss_dssp BSCEEEECTTSCCEEEEECSCS------CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE--E---EE---CSSCSC
T ss_pred ccceEEEeCCCCeeEEeecCCC------ceEEEEEeccccEEEEEeccCCceEEEecCCCCce--E---EE---eCCCCC
Confidence 3458888886655443332221 567899998766666 54 6788999988753211 1 10 111123
Q ss_pred eEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCC-CeEEEEeCCCCceEEE
Q 014125 225 MSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKD-PYILCWDLRKAVQVVY 303 (430)
Q Consensus 225 v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d-~~i~i~d~~~~~~~~~ 303 (430)
...+++.+.+++++++-...+.|.+.++........+.........++++|.+..|+.+.... +.|..+++......
T Consensus 118 p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~-- 195 (349)
T 3v64_C 118 PGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR-- 195 (349)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE--
T ss_pred ccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcE--
Confidence 567888886777778877888999999875543333333335678999999877777776455 78998888764322
Q ss_pred EeecccCCccceEEEEEcCCCCEEEEE-ccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeec
Q 014125 304 KLYRSSEHTNQRILFDIEPSGRHLGTG-GQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVD 381 (430)
Q Consensus 304 ~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw 381 (430)
.+. .........++++|++..|..+ ...+.|..+|++.......+........++++ ..+.+.++-...+.|...
T Consensus 196 ~~~--~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~ 271 (349)
T 3v64_C 196 IIA--DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSA 271 (349)
T ss_dssp ESC--CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEE
T ss_pred EEE--ECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEEE
Confidence 111 1234457889999876665554 45678999998754332223223345677777 345555555555555554
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.83 E-value=5.7e-07 Score=73.49 Aligned_cols=182 Identities=10% Similarity=-0.013 Sum_probs=118.2
Q ss_pred eEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCC
Q 014125 176 AFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN 254 (430)
Q Consensus 176 v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~ 254 (430)
...+.|+. +.++. +|.+|.|+++|+.++...... +. . ...-..+++. +..+++..-.++.+.+||..+
T Consensus 57 tqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~---l~----~-~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~T 125 (268)
T 3nok_A 57 TQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME---RL----G-NIFAEGLASD--GERLYQLTWTEGLLFTWSGMP 125 (268)
T ss_dssp EEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE---EC----T-TCCEEEEEEC--SSCEEEEESSSCEEEEEETTT
T ss_pred cceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE---CC----C-CcceeEEEEe--CCEEEEEEccCCEEEEEECCc
Confidence 35778863 33333 447788999999875332211 11 1 1111234443 456777777899999999999
Q ss_pred ceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecc-cCCccceEEEEEcCCCCEEEEEccC
Q 014125 255 MELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRS-SEHTNQRILFDIEPSGRHLGTGGQD 333 (430)
Q Consensus 255 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d 333 (430)
.+.+.++... ..-..++ ++++.|+.+. .++.|.++|..+.+......... ...-..++.+.|. +|+..+..-.+
T Consensus 126 l~~~~ti~~~-~eGwGLt--~Dg~~L~vSd-Gs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s 200 (268)
T 3nok_A 126 PQRERTTRYS-GEGWGLC--YWNGKLVRSD-GGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHS 200 (268)
T ss_dssp TEEEEEEECS-SCCCCEE--EETTEEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTC
T ss_pred CcEEEEEeCC-CceeEEe--cCCCEEEEEC-CCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCC
Confidence 9999888743 2223444 5788899888 79999999998875443222111 1112245667776 67655555567
Q ss_pred CcEEEEEcCCCCeecccccc-------------cCCeeEEEEcCCCcEEEEee
Q 014125 334 GLVHIYDLQTGKWISGFQAA-------------ADTVNGFSFHPFLPMAASSS 373 (430)
Q Consensus 334 g~i~vwd~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~l~s~~ 373 (430)
+.|.+.|..+++.+..+... .+..++|+|+|+++.|...+
T Consensus 201 ~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 201 SDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp SEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred CeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 89999999999987766422 13568999999776555444
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=6.5e-06 Score=77.17 Aligned_cols=240 Identities=14% Similarity=0.069 Sum_probs=136.3
Q ss_pred CceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEE-EEECCCCcEEEEEc------CCeEEEEEcCCCCCcccc
Q 014125 138 SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFS-VAFNPTGTKIFAGY------NKSVRVFDVHRPGRDFEK 210 (430)
Q Consensus 138 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~------d~~i~v~d~~~~~~~~~~ 210 (430)
+..++.++.|+.+..+|..+|+.+........... ..+.+ ... .++..++.+. ++.|..+|..++...++.
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~-~~~~~~P~v-~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 192 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVG-STLTQAPFV-AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRA 192 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGT-CBCCSCCEE-ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCcc-ceeccCCEE-ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence 45788888899999999999998887665331100 01111 111 1455544433 689999999876544322
Q ss_pred cccccC------C------------------------CCCCCcceEEEEEcCCCCceEEEecCC----------------
Q 014125 211 YSTLKG------N------------------------KEGQAGIMSAIAFSPTHTGMLAIGSYS---------------- 244 (430)
Q Consensus 211 ~~~~~~------~------------------------~~~~~~~v~~~~~~~~~~~~l~~~~~d---------------- 244 (430)
...... . ..+.......+++.+. ...++.+..+
T Consensus 193 ~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~-~g~vy~~~g~~~~~~~~~~~gd~~y~ 271 (571)
T 2ad6_A 193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPK-LNLFYYGSGNPAPWNETMRPGDNKWT 271 (571)
T ss_dssp ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETT-TTEEEEECCCCSCSCGGGSCSCCTTT
T ss_pred ccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCC-CCeEEEECCCCccccCCccCCCceeE
Confidence 111000 0 0000001123556663 3455555432
Q ss_pred CeEEEEEcCCceeeEEeecc--c--------cCeEEEEEccCCC---EEEEEecCCCeEEEEeCCCCceEEEEeeccc--
Q 014125 245 QTSAIYREDNMELLYVLHGQ--E--------GGVTHVQFSRDGN---YLYTGGRKDPYILCWDLRKAVQVVYKLYRSS-- 309 (430)
Q Consensus 245 g~v~~~d~~~~~~~~~~~~~--~--------~~i~~~~~~~~~~---~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~-- 309 (430)
+.|..+|.++++.+..++.. . .++ -+...++|+ .++.++ .+|.++++|..+++..........
T Consensus 272 ~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~-~~G~l~~lD~~tG~~~w~~~~~~~~~ 349 (571)
T 2ad6_A 272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTPLLSHID-RNGILYTLNRENGNLIVAEKVDPAVN 349 (571)
T ss_dssp TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEEEEEEEC-TTSEEEEEETTTCCEEEEEESSTTCC
T ss_pred EEEEEEecCCCcEEEEecCCCCcccccccCCCCE-EEecccCCcEEEEEEEeC-CCcEEEEEECCCCCEEeeecccCCcc
Confidence 36999999999988777532 1 111 122224674 456666 899999999998865543221110
Q ss_pred -------CCccce--------------------------EEEEEcCCCCEEEEEc-------------------------
Q 014125 310 -------EHTNQR--------------------------ILFDIEPSGRHLGTGG------------------------- 331 (430)
Q Consensus 310 -------~~~~~v--------------------------~~~~~~~~~~~l~~~~------------------------- 331 (430)
....++ ..++++|+..++++..
T Consensus 350 w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~ 429 (571)
T 2ad6_A 350 VFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATL 429 (571)
T ss_dssp SEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEE
T ss_pred ccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccc
Confidence 000111 2357788777666543
Q ss_pred ------------cCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCC
Q 014125 332 ------------QDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 332 ------------~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~ 383 (430)
.+|.|..||+.+++.+..+... ..+.+......+.+++.++.|+.+.++|.
T Consensus 430 ~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~ 492 (571)
T 2ad6_A 430 AMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDN 492 (571)
T ss_dssp EEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEET
T ss_pred eeccCccccCCCCCCeEEEEECCCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEEC
Confidence 3478999999999988776532 23333333334566666777777777765
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.80 E-value=1.4e-06 Score=78.74 Aligned_cols=236 Identities=13% Similarity=0.108 Sum_probs=132.5
Q ss_pred cccCccCC-CCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEc-CC----eEEEEEc
Q 014125 129 PHMSASDP-TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGY-NK----SVRVFDV 201 (430)
Q Consensus 129 ~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~-d~----~i~v~d~ 201 (430)
|...+++| ++..|+.+...+.|+.+|+..+........ . .....++|+++++.|+ +.. ++ .+..++.
T Consensus 139 P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~-~-----~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~ 212 (430)
T 3tc9_A 139 AVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSG-L-----SKVRTICWTHEADSMIITNDQNNNDRPNNYILTR 212 (430)
T ss_dssp CCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECC-C-----SCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG
T ss_pred CCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecC-C-----CCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC
Confidence 44445576 355566665558899999887665444331 1 2677999999999666 433 12 2333443
Q ss_pred CCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeec-cccCeEEEEEccCCCEE
Q 014125 202 HRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG-QEGGVTHVQFSRDGNYL 280 (430)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l 280 (430)
... . .....+. .......++++|+++.++++-..++.|..++...+........ .......++|+|+|++|
T Consensus 213 ~g~-~--~~~~~l~-----~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~l 284 (430)
T 3tc9_A 213 ESG-F--KVITELT-----KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYA 284 (430)
T ss_dssp GGT-S--CSEEEEE-----ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEE
T ss_pred CCc-e--eeeeeec-----cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEE
Confidence 221 1 0000111 1123567889996676777777789999999987654222221 12346789999999977
Q ss_pred EEEecCCCeEEEEeCCCCc-eE--EEEeecc---cC---------CccceE-EEEEc--------CCCCEEEEEccCCcE
Q 014125 281 YTGGRKDPYILCWDLRKAV-QV--VYKLYRS---SE---------HTNQRI-LFDIE--------PSGRHLGTGGQDGLV 336 (430)
Q Consensus 281 ~~~~~~d~~i~i~d~~~~~-~~--~~~~~~~---~~---------~~~~v~-~~~~~--------~~~~~l~~~~~dg~i 336 (430)
+.+....+.|..++..... .. ...+... .+ .-.... .++.. ++|.+.++-...+.|
T Consensus 285 yv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I 364 (430)
T 3tc9_A 285 YIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCI 364 (430)
T ss_dssp EEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEE
T ss_pred EEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEE
Confidence 7776578899998865421 11 0011100 00 011223 45553 346666666667788
Q ss_pred EEEEcCCCCeecccc-------c----------ccCCeeEEEEcCC-CcEEEEeeCCceee
Q 014125 337 HIYDLQTGKWISGFQ-------A----------AADTVNGFSFHPF-LPMAASSSGHRRFP 379 (430)
Q Consensus 337 ~vwd~~~~~~~~~~~-------~----------~~~~v~~~~~~~~-~~~l~s~~~d~~~~ 379 (430)
+.++. +++...... + .-.....|+++|+ +.++++-..+.+|+
T Consensus 365 ~~i~~-~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr 424 (430)
T 3tc9_A 365 RILTP-QGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIR 424 (430)
T ss_dssp EEECT-TSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEE
T ss_pred EEECC-CCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEE
Confidence 88883 454322211 0 0124688999984 55555544333333
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.2e-05 Score=75.49 Aligned_cols=273 Identities=14% Similarity=0.096 Sum_probs=152.0
Q ss_pred EEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEe------CCC
Q 014125 75 FLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTT------RDH 148 (430)
Q Consensus 75 l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~------~dg 148 (430)
|+.++.|+.+.-+|..+++..-....... . ....+ .-.|. -.++ .+++++ .+|
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~-------~------~~~~~---~ssP~----v~~g-~V~vg~~g~e~g~~g 182 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDI-------K------VGSTL---TIAPY----VVKD-KVIIGSSGAELGVRG 182 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCG-------G------GTCBC---CSCCE----EETT-EEEECCBCGGGTCCC
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCC-------C------cccee---ecCCE----EECC-EEEEEecccccCCCC
Confidence 77888899999999988865432211100 0 00000 00010 0023 444444 378
Q ss_pred cEEEEeccCCceeeeeeccccccc--------------------------------ccce-EEEEECCCCcEEEEE-cC-
Q 014125 149 PIHLWDATTGLLRCTYRAYDAVDE--------------------------------ITAA-FSVAFNPTGTKIFAG-YN- 193 (430)
Q Consensus 149 ~i~vwd~~~~~~~~~~~~~~~~~~--------------------------------~~~v-~~~~~~~~~~~l~~~-~d- 193 (430)
.|+.+|..+|+.+..+........ ...+ ..+++.++...++.+ .+
T Consensus 183 ~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~ 262 (599)
T 1w6s_A 183 YLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNP 262 (599)
T ss_dssp EEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCC
T ss_pred eEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCC
Confidence 999999999998887765432100 0001 134566666666644 33
Q ss_pred ---------------CeEEEEEcCCCCCcccccccccC--CCCCCCcceEEEEEc-CCCC--ceEEEecCCCeEEEEEcC
Q 014125 194 ---------------KSVRVFDVHRPGRDFEKYSTLKG--NKEGQAGIMSAIAFS-PTHT--GMLAIGSYSQTSAIYRED 253 (430)
Q Consensus 194 ---------------~~i~v~d~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~-~~~~--~~l~~~~~dg~v~~~d~~ 253 (430)
+.|..+|.+++...+........ .......++. +... .++. ..++.++.+|.++++|.+
T Consensus 263 ~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~ 341 (599)
T 1w6s_A 263 APWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRT 341 (599)
T ss_dssp SCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETT
T ss_pred ccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECC
Confidence 37888888875443321111000 0011112222 2222 3232 467788999999999999
Q ss_pred CceeeEEeeccc-------------cCe--------------------------EEEEEccCCCEEEEEe----------
Q 014125 254 NMELLYVLHGQE-------------GGV--------------------------THVQFSRDGNYLYTGG---------- 284 (430)
Q Consensus 254 ~~~~~~~~~~~~-------------~~i--------------------------~~~~~~~~~~~l~~~~---------- 284 (430)
+++.+....... .++ ..++++|+...+++..
T Consensus 342 tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~ 421 (599)
T 1w6s_A 342 DGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPF 421 (599)
T ss_dssp TCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEEC
T ss_pred CCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecc
Confidence 998876554110 011 2456777766665532
Q ss_pred ----------------------c------CCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcE
Q 014125 285 ----------------------R------KDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLV 336 (430)
Q Consensus 285 ----------------------~------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 336 (430)
. ..|.|..||+.+++............... +...+.+++.++.||.+
T Consensus 422 ~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~-----~~tagg~vf~gt~dg~l 496 (599)
T 1w6s_A 422 MLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGT-----MATAGDLVFYGTLDGYL 496 (599)
T ss_dssp CCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBC-----EEETTTEEEEECTTSEE
T ss_pred cccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcc-----eEecCCEEEEECCCCeE
Confidence 0 23688889998886554332211111111 12246778889999999
Q ss_pred EEEEcCCCCeecccccccCCe-eEEEEcCCCc-EEEEeeC
Q 014125 337 HIYDLQTGKWISGFQAAADTV-NGFSFHPFLP-MAASSSG 374 (430)
Q Consensus 337 ~vwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~-~l~s~~~ 374 (430)
+.||.++|+.+..++.....+ .-+.+..+|+ ++++.+.
T Consensus 497 ~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv~~~~G 536 (599)
T 1w6s_A 497 KARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIYYG 536 (599)
T ss_dssp EEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred EEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEEEEEEcc
Confidence 999999999998886543322 2345556776 5555544
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.77 E-value=2.5e-06 Score=69.74 Aligned_cols=184 Identities=11% Similarity=0.107 Sum_probs=120.2
Q ss_pred CceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCce
Q 014125 61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV 140 (430)
Q Consensus 61 ~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (430)
.....+.|+ ++.++.+.+.+|.|+++|+.+++..... .. ..----.++. . .+.+
T Consensus 55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~----------------~~~FgeGit~-------~-g~~L 108 (268)
T 3nok_A 55 AFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RL----------------GNIFAEGLAS-------D-GERL 108 (268)
T ss_dssp CCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-EC----------------TTCCEEEEEE-------C-SSCE
T ss_pred cccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC----------------CCcceeEEEE-------e-CCEE
Confidence 345789998 4677888888999999999988765433 11 0000011222 1 1234
Q ss_pred EEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccccccccCCCC
Q 014125 141 FASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKE 219 (430)
Q Consensus 141 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~ 219 (430)
.+....++.+.+||..+.+.+.++.... .-..++ ++++.|+.+ .++.|.++|..+.... ..+.-...
T Consensus 109 y~ltw~~~~v~V~D~~Tl~~~~ti~~~~------eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~----~~I~V~~~ 176 (268)
T 3nok_A 109 YQLTWTEGLLFTWSGMPPQRERTTRYSG------EGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALV----GAVQVKLR 176 (268)
T ss_dssp EEEESSSCEEEEEETTTTEEEEEEECSS------CCCCEE--EETTEEEEECSSSEEEEECTTTCCEE----EEEECEET
T ss_pred EEEEccCCEEEEEECCcCcEEEEEeCCC------ceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEE----EEEEeCCC
Confidence 4445578899999999999999888642 223444 567777755 6889999998763211 11111001
Q ss_pred C-CCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeecc-------------ccCeEEEEEccCCCEEEEEe
Q 014125 220 G-QAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ-------------EGGVTHVQFSRDGNYLYTGG 284 (430)
Q Consensus 220 ~-~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~-------------~~~i~~~~~~~~~~~l~~~~ 284 (430)
+ .-..++.+.|. ++.+++....+..|.+.|.++++.+..+... ..-.+.|+++|+++.|++++
T Consensus 177 g~~v~~lNeLe~~--dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 177 GQPVELINELECA--NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp TEECCCEEEEEEE--TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred CcccccccccEEe--CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 1 11235667776 3456666667889999999999988777632 12568999999988888887
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.76 E-value=4.7e-06 Score=67.53 Aligned_cols=185 Identities=14% Similarity=0.165 Sum_probs=117.8
Q ss_pred CceeEEEECcCCceEEEecCCC--eEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCC
Q 014125 61 NFLKGIKWSPDGSSFLTSSEDK--TLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS 138 (430)
Q Consensus 61 ~~v~~~~~sp~~~~l~s~~~dg--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 138 (430)
.....+.|++ +.++.+.+.+| .|+++|+.+++......... .----.++. . .+
T Consensus 21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~----------------~~fgeGi~~-------~-~~ 75 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPP----------------PYFGAGIVA-------W-RD 75 (243)
T ss_dssp CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCT----------------TCCEEEEEE-------E-TT
T ss_pred cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCC----------------CcceeEEEE-------e-CC
Confidence 4466899987 66677777654 89999999886644332211 000011111 0 13
Q ss_pred ceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccccccccCC
Q 014125 139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGN 217 (430)
Q Consensus 139 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~ 217 (430)
.+......++.+.++|..+.+.+.++.... .-..++ +++..|+.+ .++.|.++|..+.... ..+.-.
T Consensus 76 ~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~------~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~----~~I~V~ 143 (243)
T 3mbr_X 76 RLIQLTWRNHEGFVYDLATLTPRARFRYPG------EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQV----GSIKVT 143 (243)
T ss_dssp EEEEEESSSSEEEEEETTTTEEEEEEECSS------CCCEEE--ECSSCEEEECSSSEEEEECTTTCCEE----EEEECE
T ss_pred EEEEEEeeCCEEEEEECCcCcEEEEEeCCC------CceEEe--eCCCEEEEECCCCeEEEEeCCCCeEE----EEEEEc
Confidence 344445578899999999999999888643 223455 466666654 6788999998763211 111110
Q ss_pred CCCC-CcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeecc-------------ccCeEEEEEccCCCEEEEE
Q 014125 218 KEGQ-AGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ-------------EGGVTHVQFSRDGNYLYTG 283 (430)
Q Consensus 218 ~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~-------------~~~i~~~~~~~~~~~l~~~ 283 (430)
..+. -..++.+.+. ++.+++..-.+..|.+.|.++++.+..+... ..-.+.|+++|+++.|+++
T Consensus 144 ~~g~~~~~lNeLe~~--~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVT 221 (243)
T 3mbr_X 144 AGGRPLDNLNELEWV--NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVT 221 (243)
T ss_dssp ETTEECCCEEEEEEE--TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEE
T ss_pred cCCcccccceeeEEe--CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEE
Confidence 0111 1235566665 4456666667889999999999988776522 1246889999999988888
Q ss_pred e
Q 014125 284 G 284 (430)
Q Consensus 284 ~ 284 (430)
+
T Consensus 222 G 222 (243)
T 3mbr_X 222 G 222 (243)
T ss_dssp E
T ss_pred C
Confidence 8
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.75 E-value=2.2e-06 Score=77.33 Aligned_cols=235 Identities=10% Similarity=0.026 Sum_probs=133.3
Q ss_pred cccCccCCC--CceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCC-----eEEEEEc
Q 014125 129 PHMSASDPT--SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNK-----SVRVFDV 201 (430)
Q Consensus 129 ~~~~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~-----~i~v~d~ 201 (430)
|...+++|+ ...|+.+...+.|+.+++.++......... .....+++++++.++++...+ .+...+.
T Consensus 141 P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~------~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~ 214 (433)
T 4hw6_A 141 IWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNI------GQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTR 214 (433)
T ss_dssp CCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCC------SCEEEEEECTTCCEEEEECCSCTTSEEEEEECG
T ss_pred CceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCC------CCccEEEECCCCCEEEEcCCCCcccceEEEEEC
Confidence 333444663 334555544488999999877665443311 257899999999955555322 2333332
Q ss_pred CCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEe-ec-cccCeEEEEEccCCCE
Q 014125 202 HRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVL-HG-QEGGVTHVQFSRDGNY 279 (430)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~-~~-~~~~i~~~~~~~~~~~ 279 (430)
... .... ..+ ........++++|.++.++++-..++.|+.+|..++.....+ .. ....-..++|+|+++.
T Consensus 215 ~~~-~~~~--~~~-----~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~ 286 (433)
T 4hw6_A 215 ASG-FTER--LSL-----CNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDW 286 (433)
T ss_dssp GGT-TCCE--EEE-----EECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSE
T ss_pred CCC-eecc--ccc-----cccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCE
Confidence 211 0000 000 011234567888866666666667889999999877652222 21 1122347999999997
Q ss_pred EEEEecCCCeEEEEeCCCCce-E--EEEeecc---c---------CCccceEEEEE---------cCCCCEEEEEccCCc
Q 014125 280 LYTGGRKDPYILCWDLRKAVQ-V--VYKLYRS---S---------EHTNQRILFDI---------EPSGRHLGTGGQDGL 335 (430)
Q Consensus 280 l~~~~~~d~~i~i~d~~~~~~-~--~~~~~~~---~---------~~~~~v~~~~~---------~~~~~~l~~~~~dg~ 335 (430)
|+.+....+.|+.++...... . ...+... . ..-.....+++ .++|.+.++-...+.
T Consensus 287 LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~ 366 (433)
T 4hw6_A 287 AYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHT 366 (433)
T ss_dssp EEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTE
T ss_pred EEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCE
Confidence 877775778999988653211 0 0011110 0 01234667888 777777777777788
Q ss_pred EEEEEcCCCCeecccccc------------------cCCeeEEEEc-CCCcEEEEeeCCceee
Q 014125 336 VHIYDLQTGKWISGFQAA------------------ADTVNGFSFH-PFLPMAASSSGHRRFP 379 (430)
Q Consensus 336 i~vwd~~~~~~~~~~~~~------------------~~~v~~~~~~-~~~~~l~s~~~d~~~~ 379 (430)
|+.++. ++... .+.+. -....+|+++ +++.++++=..+++|+
T Consensus 367 I~~~~~-~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr 427 (433)
T 4hw6_A 367 VRVLTP-EGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVR 427 (433)
T ss_dssp EEEECT-TSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEE
T ss_pred EEEECC-CCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEE
Confidence 999985 45332 22111 1236788888 5665555544333333
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.75 E-value=2.1e-05 Score=64.69 Aligned_cols=214 Identities=10% Similarity=0.083 Sum_probs=127.8
Q ss_pred eecccCCCceeEEEECcCCceE-EEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccC
Q 014125 54 RTSSIPNNFLKGIKWSPDGSSF-LTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS 132 (430)
Q Consensus 54 ~~~~~h~~~v~~~~~sp~~~~l-~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 132 (430)
+.+.+-.+.+..++|+|+++.| ++...++.|...|.. ++..... .+......-.+++
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i----------------~l~g~~D~EGIa~----- 77 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTI----------------PLDFVKDLETIEY----- 77 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEE----------------ECSSCSSEEEEEE-----
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEE----------------ecCCCCChHHeEE-----
Confidence 3455666679999999976644 456678888888886 4322111 1111134555666
Q ss_pred ccCCCCceEEEEeCCCcEEEEeccCCce---eeeeecc-cccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCC--CC
Q 014125 133 ASDPTSCVFASTTRDHPIHLWDATTGLL---RCTYRAY-DAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHR--PG 205 (430)
Q Consensus 133 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~---~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~--~~ 205 (430)
.+++.++++.-.++.+.++++..... ....... .........-.++|+|.+..|. +.......+|.++. ..
T Consensus 78 --~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~ 155 (255)
T 3qqz_A 78 --IGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSS 155 (255)
T ss_dssp --CSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCS
T ss_pred --eCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccC
Confidence 55677667766778899998766542 2222211 1112233567999999986666 44444445555431 11
Q ss_pred CcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccc---------cCeEEEEEccC
Q 014125 206 RDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE---------GGVTHVQFSRD 276 (430)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~---------~~i~~~~~~~~ 276 (430)
...................+.+++++|..+.+++.+..+..+..+|.. ++.+..+.-.. .....|+|.++
T Consensus 156 ~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~ 234 (255)
T 3qqz_A 156 NELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDAS 234 (255)
T ss_dssp SCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTT
T ss_pred CceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCC
Confidence 111110000000011223578999999888889999999999999976 55554443221 25689999999
Q ss_pred CCEEEEEecCCCeEEEEe
Q 014125 277 GNYLYTGGRKDPYILCWD 294 (430)
Q Consensus 277 ~~~l~~~~~~d~~i~i~d 294 (430)
|+ |+..+ ..+.++.|.
T Consensus 235 G~-lyIvs-E~n~~y~f~ 250 (255)
T 3qqz_A 235 GN-IYIVS-EPNRFYRFT 250 (255)
T ss_dssp CC-EEEEE-TTTEEEEEE
T ss_pred CC-EEEEc-CCceEEEEE
Confidence 97 55566 677666664
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.74 E-value=7.8e-05 Score=73.14 Aligned_cols=286 Identities=10% Similarity=0.022 Sum_probs=166.4
Q ss_pred CCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCC
Q 014125 59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS 138 (430)
Q Consensus 59 h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 138 (430)
....|.++...++|. |-.|+.++-|..++.............. ...........|.+++. .+++
T Consensus 311 ~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~v~~i~~-------d~~g 374 (781)
T 3v9f_A 311 SNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPT--------QMNESSLSNKVVSSVCD-------DGQG 374 (781)
T ss_dssp SSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC------------CCCSSCCSSSCEEEEEE-------CTTS
T ss_pred CCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCcc--------ccccCCCCCcceEEEEE-------cCCC
Confidence 456799999998886 4456666668888876543211000000 00000012245777776 4455
Q ss_pred ceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccCCC
Q 014125 139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNK 218 (430)
Q Consensus 139 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~ 218 (430)
. |..|+.++-|..|+..++..... .... ......|.++...+++.+.+++.++-|..++..+.. ... ....
T Consensus 375 ~-lWigt~~~Gl~~~~~~~~~~~~~-~~~~-~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~--~~~---~~~~- 445 (781)
T 3v9f_A 375 K-LWIGTDGGGINVFENGKRVAIYN-KENR-ELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKK--FQI---IELE- 445 (781)
T ss_dssp C-EEEEEBSSCEEEEETTEEEEECC-------CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCE--EEE---CCST-
T ss_pred C-EEEEeCCCcEEEEECCCCeEEEc-cCCC-CCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCc--EEE---eccC-
Confidence 5 55566555699999876543221 1100 111237889999888988887777788888875421 111 1100
Q ss_pred CCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeecc-----ccCeEEEEEccCCCEEEEEecCCCeEEEE
Q 014125 219 EGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ-----EGGVTHVQFSRDGNYLYTGGRKDPYILCW 293 (430)
Q Consensus 219 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~~d~~i~i~ 293 (430)
......|.++...+ .+ .|..|+. +-|..||..+++........ ...|.++...++|...+ ++ .++-|..|
T Consensus 446 ~~~~~~v~~i~~d~-~g-~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt-~~~Gl~~~ 520 (781)
T 3v9f_A 446 KNELLDVRVFYEDK-NK-KIWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GT-FGGGVGIY 520 (781)
T ss_dssp TTCCCCEEEEEECT-TS-EEEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EE-SSSCEEEE
T ss_pred CCCCCeEEEEEECC-CC-CEEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEE-EE-cCCCEEEE
Confidence 12235688888877 34 4555555 56889998876544332211 35789999999887555 44 44447778
Q ss_pred eCCCCceEEEEeec-ccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccccc----ccCCeeEEEEcCCCcE
Q 014125 294 DLRKAVQVVYKLYR-SSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQA----AADTVNGFSFHPFLPM 368 (430)
Q Consensus 294 d~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~ 368 (430)
|..+.... .... ..-....|.++..+++|.+.++. .+|.|..||..+++.. .+.. ....|.++...++|.+
T Consensus 521 ~~~~~~~~--~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d~~~~~~~-~~~~~~gl~~~~i~~i~~d~~g~l 596 (781)
T 3v9f_A 521 TPDMQLVR--KFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLVCFPSARNFDYQ-VFQRKEGLPNTHIRAISEDKNGNI 596 (781)
T ss_dssp CTTCCEEE--EECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEEEESCTTTCCCE-EECGGGTCSCCCCCEEEECSSSCE
T ss_pred eCCCCeEE--EccCCCCCCCCeeEEEEECCCCCEEEEE-CCCceEEECCCCCcEE-EccccCCCCCceEEEEEECCCCCE
Confidence 88765322 2211 11234578899998888865544 4675588998776532 2221 1235788888888887
Q ss_pred EEEeeCCceee
Q 014125 369 AASSSGHRRFP 379 (430)
Q Consensus 369 l~s~~~d~~~~ 379 (430)
.+++ ..|..+
T Consensus 597 W~~t-~~Gl~~ 606 (781)
T 3v9f_A 597 WAST-NTGISC 606 (781)
T ss_dssp EEEC-SSCEEE
T ss_pred EEEc-CCceEE
Confidence 6664 444333
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.73 E-value=0.00011 Score=72.08 Aligned_cols=289 Identities=11% Similarity=0.057 Sum_probs=165.9
Q ss_pred CceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCce
Q 014125 61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV 140 (430)
Q Consensus 61 ~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (430)
..|.++...++|.+.+. +.+ -+.+||..++.......... .........|.++.. .++|.
T Consensus 211 ~~i~~i~~d~~g~lwig-t~~-Gl~~~d~~~~~~~~~~~~~~----------~~~~l~~~~i~~i~~-------d~~g~- 270 (781)
T 3v9f_A 211 NDVRCIYKDTNGNIWIG-TSK-GLALFNANTETFTNFHNNPG----------NIHGALSSYIFSIKQ-------LKDNK- 270 (781)
T ss_dssp SSEEEEEECTTCCEEEE-ETT-EEEEEETTTTEEEC---------------------CCCCEEEEEE-------CTTSE-
T ss_pred CceeEEEEcCCCCEEEE-eCC-cHheECCCCCcEEEEEcCCC----------ccccccCceEEEEEE-------CCCCC-
Confidence 56888988888876554 444 58888876543211000000 000012246777776 45565
Q ss_pred EEEEeCCCcEEEEeccCCceeeeee-------cc--cccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCccccc
Q 014125 141 FASTTRDHPIHLWDATTGLLRCTYR-------AY--DAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKY 211 (430)
Q Consensus 141 l~~~~~dg~i~vwd~~~~~~~~~~~-------~~--~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~ 211 (430)
|..|+..+-|.+++..++....... .. ...-....|.++...++|.+-+++.++-|..++..... +...
T Consensus 271 lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~--~~~~ 348 (781)
T 3v9f_A 271 LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGINFISNAPPT--FHTW 348 (781)
T ss_dssp EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCEEEECSSCCS--CEEE
T ss_pred EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCc--ceee
Confidence 4455554458899987765432211 10 00011236889999999988887778888888876432 1111
Q ss_pred cccc---CCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEe---eccccCeEEEEEccCCCEEEEEec
Q 014125 212 STLK---GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVL---HGQEGGVTHVQFSRDGNYLYTGGR 285 (430)
Q Consensus 212 ~~~~---~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~ 285 (430)
.... .........|.++...++ + .|.+|+.++-|..||..++...... ......|.++...++|...+ ++
T Consensus 349 ~~~~~~~~~~~l~~~~v~~i~~d~~-g-~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt- 424 (781)
T 3v9f_A 349 SYSPTQMNESSLSNKVVSSVCDDGQ-G-KLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GT- 424 (781)
T ss_dssp C----CCCSSCCSSSCEEEEEECTT-S-CEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EE-
T ss_pred ccCccccccCCCCCcceEEEEEcCC-C-CEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-Ee-
Confidence 1000 011112356889888773 3 4666776777999998765432211 11235689999888887544 55
Q ss_pred CCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccc-----cCCeeEE
Q 014125 286 KDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAA-----ADTVNGF 360 (430)
Q Consensus 286 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-----~~~v~~~ 360 (430)
.++-|..+|..+.... ...........|.++...++|.+.+ |+. +-|..+|..+++........ ...|.++
T Consensus 425 ~~~Gl~~~~~~~~~~~--~~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i 500 (781)
T 3v9f_A 425 YLGNISYYNTRLKKFQ--IIELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSI 500 (781)
T ss_dssp TTEEEEEECSSSCEEE--ECCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEE
T ss_pred ccCCEEEEcCCCCcEE--EeccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEE
Confidence 5677888988765321 2211112346788898888876554 444 45889998876543322111 3578999
Q ss_pred EEcCCCcEEEEeeCCceee
Q 014125 361 SFHPFLPMAASSSGHRRFP 379 (430)
Q Consensus 361 ~~~~~~~~l~s~~~d~~~~ 379 (430)
...++|.+.+.....|..+
T Consensus 501 ~~d~~g~lWigt~~~Gl~~ 519 (781)
T 3v9f_A 501 AQDSEGRFWIGTFGGGVGI 519 (781)
T ss_dssp EECTTCCEEEEESSSCEEE
T ss_pred EEcCCCCEEEEEcCCCEEE
Confidence 9999888776655455433
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.73 E-value=5e-06 Score=80.89 Aligned_cols=197 Identities=11% Similarity=0.137 Sum_probs=110.5
Q ss_pred ceeEEEEC-cCCceEEEecC-C----CeEEEEeCCCC-CCcccccccccccccCcccceeeecCCCeeeeeeeccccCcc
Q 014125 62 FLKGIKWS-PDGSSFLTSSE-D----KTLRIFSLPEN-GISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS 134 (430)
Q Consensus 62 ~v~~~~~s-p~~~~l~s~~~-d----g~v~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 134 (430)
.+...+|| |||++||.+.. + ..|+++|+.++ ..... .+ ......++|
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~---------------~~----~~~~~~~~W------- 228 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD---------------KV----SGTNGEIVW------- 228 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC---------------CE----EEECSCCEE-------
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc---------------cc----cCceeeEEE-------
Confidence 57889999 99998885433 2 35999999876 42100 00 012345678
Q ss_pred CCCCceEEEEeCC-----CcEEEEeccCCcee--eeeecccccccccceEEEEECCCCcEEE-EE---cCCeEEEEEcCC
Q 014125 135 DPTSCVFASTTRD-----HPIHLWDATTGLLR--CTYRAYDAVDEITAAFSVAFNPTGTKIF-AG---YNKSVRVFDVHR 203 (430)
Q Consensus 135 ~~~~~~l~~~~~d-----g~i~vwd~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~---~d~~i~v~d~~~ 203 (430)
+||++.|+....+ ..|.++++.++... ..+..... .....+.|+|||++|+ .+ ....|.++|+..
T Consensus 229 spDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~----~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~ 304 (751)
T 2xe4_A 229 GPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNP----LFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRK 304 (751)
T ss_dssp CSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCT----TCEEEEEECTTSSEEEEEEECSSCEEEEEEESSS
T ss_pred ecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCC----ceEEEEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence 7788888777665 25788888776432 22222111 1345789999999888 33 245688888876
Q ss_pred CCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCC----CeEEEEEcCCceeeEE-eecccc--CeEEEEEccC
Q 014125 204 PGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS----QTSAIYREDNMELLYV-LHGQEG--GVTHVQFSRD 276 (430)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~v~~~d~~~~~~~~~-~~~~~~--~i~~~~~~~~ 276 (430)
+..... ...+ .........++.|+. ++.+++....+ ..|..+++.+...... +..+.. .+..+.+ .
T Consensus 305 ~~~~~~-~~~l---~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~--~ 377 (751)
T 2xe4_A 305 GNAHNT-LEIV---RPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV--R 377 (751)
T ss_dssp CTTCCC-EEES---SCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE--C
T ss_pred CCCCce-eEEe---ecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE--E
Confidence 421110 0111 122234455566554 55566655543 3677777765222122 222333 3444544 4
Q ss_pred CCEEEEEecCCCe--EEEEeC
Q 014125 277 GNYLYTGGRKDPY--ILCWDL 295 (430)
Q Consensus 277 ~~~l~~~~~~d~~--i~i~d~ 295 (430)
+..|+.....++. |.++++
T Consensus 378 ~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 378 SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp SSEEEEEEEETTEEEEEEEEC
T ss_pred CCEEEEEEEeCCEEEEEEEec
Confidence 5666655547775 455564
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.72 E-value=3.2e-05 Score=72.58 Aligned_cols=175 Identities=13% Similarity=0.084 Sum_probs=102.7
Q ss_pred CeEEEEEcCCCCCcccccccccC--CCCCCCcceEEEEEc-CCCC--ceEEEecCCCeEEEEEcCCceeeEEeeccc---
Q 014125 194 KSVRVFDVHRPGRDFEKYSTLKG--NKEGQAGIMSAIAFS-PTHT--GMLAIGSYSQTSAIYREDNMELLYVLHGQE--- 265 (430)
Q Consensus 194 ~~i~v~d~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~-~~~~--~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~--- 265 (430)
+.|..+|..++...+........ .......++. +... .++. ..++.++.+|.++++|..+++.+..+....
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~ 369 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNIT 369 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCC
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcc
Confidence 57888888876544332111000 0011112222 2222 3232 478889999999999999998876654321
Q ss_pred ----------cC--------------------------------eEEEEEccCCCEEEEEec------------------
Q 014125 266 ----------GG--------------------------------VTHVQFSRDGNYLYTGGR------------------ 285 (430)
Q Consensus 266 ----------~~--------------------------------i~~~~~~~~~~~l~~~~~------------------ 285 (430)
.+ -..++++|+...+++...
T Consensus 370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~ 449 (582)
T 1flg_A 370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSA 449 (582)
T ss_dssp SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSC
T ss_pred ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCc
Confidence 00 013566776666655431
Q ss_pred --------------CCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccc
Q 014125 286 --------------KDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQ 351 (430)
Q Consensus 286 --------------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 351 (430)
.+|.|..||+.+++............... + ...+.+++.|+.||.++.||.++|+.+..++
T Consensus 450 ~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~---~--~tagglvf~g~~dg~l~A~D~~tG~~lW~~~ 524 (582)
T 1flg_A 450 YLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGV---L--ATAGNLVFTGTGDGYFKAFDAKSGKELWKFQ 524 (582)
T ss_dssp CCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCSCC---E--EETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred eeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCcccc---e--EeCCCEEEEECCCCcEEEEECCCCCEEEEec
Confidence 25789999999987654433211111111 1 1236788889999999999999999999887
Q ss_pred cccCCe-eEEEEcCCCc-EEEEeeC
Q 014125 352 AAADTV-NGFSFHPFLP-MAASSSG 374 (430)
Q Consensus 352 ~~~~~v-~~~~~~~~~~-~l~s~~~ 374 (430)
...+.. .-+.+..+|+ ++++.+.
T Consensus 525 ~~~g~~a~P~~y~~~G~qYv~~~~G 549 (582)
T 1flg_A 525 TGSGIVSPPITWEQDGEQYLGVTVG 549 (582)
T ss_dssp CSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred CCCCcccCceEEEECCEEEEEEEcc
Confidence 544322 2256667777 5555443
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.72 E-value=5.5e-05 Score=65.14 Aligned_cols=218 Identities=11% Similarity=0.005 Sum_probs=131.9
Q ss_pred CeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceee-eeecccccccccceEEEEECCCCcEEE-EE-cCCeE
Q 014125 120 ESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRC-TYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSV 196 (430)
Q Consensus 120 ~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i 196 (430)
.....+.|.+. ++.++.+-...+.|..+++..+.... .+... ......+++.+.+..|+ +. ..+.|
T Consensus 35 ~~~~~ld~d~~------~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~-----l~~p~glavd~~~g~ly~~d~~~~~I 103 (318)
T 3sov_A 35 EDAAAVDFVFS------HGLIYWSDVSEEAIKRTEFNKTESVQNVVVSG-----LLSPDGLACDWLGEKLYWTDSETNRI 103 (318)
T ss_dssp EEEEEEEEEGG------GTEEEEEETTTTEEEEEETTSSSCCCEEEEEC-----CSCCCEEEEETTTTEEEEEETTTTEE
T ss_pred CccEEEEEEeC------CCEEEEEECCCCcEEEEEccCCCceEEEEcCC-----CCCccEEEEEcCCCeEEEEECCCCEE
Confidence 35667888432 34455565667889999987663221 11111 11455788887665555 44 56789
Q ss_pred EEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEec-CCCeEEEEEcCCceeeEEeeccccCeEEEEEcc
Q 014125 197 RVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS-YSQTSAIYREDNMELLYVLHGQEGGVTHVQFSR 275 (430)
Q Consensus 197 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~ 275 (430)
.+++++.... .. +. .........++++|.++.++.+-. ..+.|..+++............-...+.|+++|
T Consensus 104 ~~~~~dG~~~--~~---l~---~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~ 175 (318)
T 3sov_A 104 EVSNLDGSLR--KV---LF---WQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDY 175 (318)
T ss_dssp EEEETTSCSC--EE---EE---CSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEET
T ss_pred EEEECCCCcE--EE---EE---eCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEec
Confidence 9999864221 11 10 122234689999985555555542 367899988864333222222234568999999
Q ss_pred CCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccC
Q 014125 276 DGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAAD 355 (430)
Q Consensus 276 ~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 355 (430)
++..|+.+....+.|..+|+....... .. .........+++.. +.++.+-...+.|..++..+++....+.....
T Consensus 176 ~~~~lY~aD~~~~~I~~~d~dG~~~~~-~~---~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~ 250 (318)
T 3sov_A 176 EEQKLYWADAKLNFIHKSNLDGTNRQA-VV---KGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGLREIHSDIF 250 (318)
T ss_dssp TTTEEEEEETTTTEEEEEETTSCSCEE-EE---CSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEECCCS
T ss_pred cCCEEEEEECCCCEEEEEcCCCCceEE-Ee---cCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCceEEEeCCCC
Confidence 888888887678899999987543322 11 12234456677753 44555666678899999988877665543333
Q ss_pred CeeEEE
Q 014125 356 TVNGFS 361 (430)
Q Consensus 356 ~v~~~~ 361 (430)
...+++
T Consensus 251 ~P~~i~ 256 (318)
T 3sov_A 251 SPMDIH 256 (318)
T ss_dssp SCCCEE
T ss_pred CCcEEE
Confidence 334443
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.72 E-value=5.8e-05 Score=62.07 Aligned_cols=207 Identities=12% Similarity=0.093 Sum_probs=127.3
Q ss_pred CeeeeeeeccccCccCCCC-ceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEE
Q 014125 120 ESVYDFCWFPHMSASDPTS-CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVR 197 (430)
Q Consensus 120 ~~v~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~ 197 (430)
..+..++|. |++ .++++...++.|...|+. ++.+..+..... ...-.+++.+++.++++. .++.+.
T Consensus 27 ~~lSGla~~-------~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~----~D~EGIa~~~~g~~~vs~E~~~~l~ 94 (255)
T 3qqz_A 27 NNISSLTWS-------AQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFV----KDLETIEYIGDNQFVISDERDYAIY 94 (255)
T ss_dssp SCEEEEEEE-------TTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSC----SSEEEEEECSTTEEEEEETTTTEEE
T ss_pred cCcceeEEe-------CCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCC----CChHHeEEeCCCEEEEEECCCCcEE
Confidence 468889994 444 455667888999999997 887777754321 245678899999877776 678899
Q ss_pred EEEcCCCCCccccccccc--CCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcC---CceeeEEee-------ccc
Q 014125 198 VFDVHRPGRDFEKYSTLK--GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED---NMELLYVLH-------GQE 265 (430)
Q Consensus 198 v~d~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~---~~~~~~~~~-------~~~ 265 (430)
++++..... ........ ............++|+|.+..+++ +.+.....+|.++ ....+..+. .+.
T Consensus 95 ~~~v~~~~~-i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~v-a~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~ 172 (255)
T 3qqz_A 95 VISLTPNSE-VKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWF-FKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTL 172 (255)
T ss_dssp EEEECTTCC-EEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEE-EEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCS
T ss_pred EEEcCCCCe-eeeeeeeccccccccccCCcceEEEeCCCCEEEE-EECcCCceEEEEcccccCCceeeecchhhcccccc
Confidence 999876543 11111111 111233556899999995544444 4444444444433 111122221 122
Q ss_pred cCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeeccc----CCccceEEEEEcCCCCEEEEEccCCcEEEEEc
Q 014125 266 GGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSS----EHTNQRILFDIEPSGRHLGTGGQDGLVHIYDL 341 (430)
Q Consensus 266 ~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 341 (430)
..+.+++++|....+++.+...+.|..+|..........+.... ..-...-.++|.++|++.++ ++-+.++++.-
T Consensus 173 ~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 173 DDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred CCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence 35789999997766666665888999999876532222222100 01235678999999985554 67777777754
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.1e-05 Score=65.50 Aligned_cols=184 Identities=13% Similarity=0.047 Sum_probs=116.5
Q ss_pred ceEEEEECCCCcEEEE-EcC--CeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEE
Q 014125 175 AAFSVAFNPTGTKIFA-GYN--KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYR 251 (430)
Q Consensus 175 ~v~~~~~~~~~~~l~~-~~d--~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d 251 (430)
-...+.|++ +.++.+ |.+ +.|+.+|+.++... ... .+ ..+ ..-..+++. +..++...-.++.+.+||
T Consensus 22 ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~-~~~-~l----~~~-~fgeGi~~~--~~~ly~ltw~~~~v~v~D 91 (243)
T 3mbr_X 22 FTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRIL-QRA-EV----PPP-YFGAGIVAW--RDRLIQLTWRNHEGFVYD 91 (243)
T ss_dssp CEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEE-EEE-EC----CTT-CCEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred ccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEE-EEE-eC----CCC-cceeEEEEe--CCEEEEEEeeCCEEEEEE
Confidence 345788876 444443 443 58999999874321 111 11 111 111233443 455777777799999999
Q ss_pred cCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccC-CccceEEEEEcCCCCEEEEE
Q 014125 252 EDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSE-HTNQRILFDIEPSGRHLGTG 330 (430)
Q Consensus 252 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~ 330 (430)
..+.+.+.++.... .-..++ +++..|+++. .++.|.++|..+............+ .-..++.+.+. +|+..+..
T Consensus 92 ~~tl~~~~ti~~~~-~Gwglt--~dg~~L~vSd-gs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanv 166 (243)
T 3mbr_X 92 LATLTPRARFRYPG-EGWALT--SDDSHLYMSD-GTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANV 166 (243)
T ss_dssp TTTTEEEEEEECSS-CCCEEE--ECSSCEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEE
T ss_pred CCcCcEEEEEeCCC-CceEEe--eCCCEEEEEC-CCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEE
Confidence 99999998887432 224444 5788888888 6899999999987543322211111 11345566665 56655555
Q ss_pred ccCCcEEEEEcCCCCeecccccc-------------cCCeeEEEEcCCCcEEEEee
Q 014125 331 GQDGLVHIYDLQTGKWISGFQAA-------------ADTVNGFSFHPFLPMAASSS 373 (430)
Q Consensus 331 ~~dg~i~vwd~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~l~s~~ 373 (430)
-.+..|.+.|..+++.+..+... ....++|+++|+++.|...+
T Consensus 167 w~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 167 WLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp TTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred CCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 56789999999999987765421 13568999999877555554
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=2.4e-05 Score=73.35 Aligned_cols=203 Identities=12% Similarity=0.084 Sum_probs=121.3
Q ss_pred CceEEEEeC-CCcEEEEec-cCCceeeeeecccccccc------cceEEEEECC-CCc----EEEEEcCCeEEEEEcCCC
Q 014125 138 SCVFASTTR-DHPIHLWDA-TTGLLRCTYRAYDAVDEI------TAAFSVAFNP-TGT----KIFAGYNKSVRVFDVHRP 204 (430)
Q Consensus 138 ~~~l~~~~~-dg~i~vwd~-~~~~~~~~~~~~~~~~~~------~~v~~~~~~~-~~~----~l~~~~d~~i~v~d~~~~ 204 (430)
+..+++++. ++.|.-+|. .+|+.+..+......... .....+++.| ++. +++.+.|+.|.-+|..++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 345666776 889999999 899988887654321100 0012345533 333 444558899999999876
Q ss_pred CCcccccccccC-CCCCCCcceEEEEEcCCCCceEEEec------CCCeEEEEEcCCceeeEEeeccccC----------
Q 014125 205 GRDFEKYSTLKG-NKEGQAGIMSAIAFSPTHTGMLAIGS------YSQTSAIYREDNMELLYVLHGQEGG---------- 267 (430)
Q Consensus 205 ~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~------~dg~v~~~d~~~~~~~~~~~~~~~~---------- 267 (430)
...++....... .......++ +. ++ .+++++ .+|.|+.+|.++++.+..+......
T Consensus 142 ~~~W~~~~~~~~~~~~~~ssP~----v~--~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~ 214 (599)
T 1w6s_A 142 ETVWKVENSDIKVGSTLTIAPY----VV--KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFN 214 (599)
T ss_dssp CEEEEEECCCGGGTCBCCSCCE----EE--TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTT
T ss_pred CEEEeecCCCCCccceeecCCE----EE--CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccc
Confidence 554432110000 000001111 11 33 455555 3799999999999988776532111
Q ss_pred ---------------------------e-EEEEEccCCCEEEEEecCC----------------CeEEEEeCCCCceEEE
Q 014125 268 ---------------------------V-THVQFSRDGNYLYTGGRKD----------------PYILCWDLRKAVQVVY 303 (430)
Q Consensus 268 ---------------------------i-~~~~~~~~~~~l~~~~~~d----------------~~i~i~d~~~~~~~~~ 303 (430)
+ ..+++.+....++.+. .+ +.|..+|.++++....
T Consensus 215 ~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~-g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~ 293 (599)
T 1w6s_A 215 IKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGT-GNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFG 293 (599)
T ss_dssp TTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEEC-CCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEE
T ss_pred cccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeC-CCCccccCcccCCCccccceEEEEeCCCCceeeE
Confidence 0 1346667777788776 44 4899999999876543
Q ss_pred EeecccCCc--------cceEEEEEc-CCC---CEEEEEccCCcEEEEEcCCCCeecccc
Q 014125 304 KLYRSSEHT--------NQRILFDIE-PSG---RHLGTGGQDGLVHIYDLQTGKWISGFQ 351 (430)
Q Consensus 304 ~~~~~~~~~--------~~v~~~~~~-~~~---~~l~~~~~dg~i~vwd~~~~~~~~~~~ 351 (430)
... ..|. .++. +... .+| ..++.++.+|.++++|..+|+++....
T Consensus 294 ~q~--~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~ 350 (599)
T 1w6s_A 294 YQK--TPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANK 350 (599)
T ss_dssp EES--STTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred eec--CCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeeccc
Confidence 332 2221 2222 3332 567 567888999999999999999876543
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.66 E-value=0.00014 Score=62.62 Aligned_cols=223 Identities=8% Similarity=0.010 Sum_probs=136.6
Q ss_pred EEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCC--CcccccccccC
Q 014125 141 FASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPG--RDFEKYSTLKG 216 (430)
Q Consensus 141 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~v~d~~~~~--~~~~~~~~~~~ 216 (430)
|+.+.. ..|+..|+.+.+....+.... .+.+++|++.+..|+ +. ..+.|..+++.... .... .+.
T Consensus 4 ll~~~~-~~I~~i~~~~~~~~~~~~~~~------~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~---~~~- 72 (316)
T 1ijq_A 4 LFFTNR-HEVRKMTLDRSEYTSLIPNLR------NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD---TVI- 72 (316)
T ss_dssp EEEECB-SSEEEEETTSCCCEEEECSCS------SEEEEEEETTTTEEEEEETTTTEEEEEEC--------CE---EEE-
T ss_pred EEEECC-CeEEEEECCCcceEehhcCCC------ceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccE---EEE-
Confidence 344333 458999998876555443222 567899998776665 55 56899999986511 0111 110
Q ss_pred CCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCC-CeEEEEeC
Q 014125 217 NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKD-PYILCWDL 295 (430)
Q Consensus 217 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d-~~i~i~d~ 295 (430)
.........+++++.+++++++-...+.|.++++........+.........++++|.+..|+.+.... +.|..+++
T Consensus 73 --~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~ 150 (316)
T 1ijq_A 73 --SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL 150 (316)
T ss_dssp --CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred --eCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcC
Confidence 111123568888875677777777889999999875443333332335678999999877777776233 78888888
Q ss_pred CCCceEEEEeecccCCccceEEEEEcCCCCEEEEE-ccCCcEEEEEcCCCCeeccccc---ccCCeeEEEEcCCCcEEEE
Q 014125 296 RKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTG-GQDGLVHIYDLQTGKWISGFQA---AADTVNGFSFHPFLPMAAS 371 (430)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s 371 (430)
....... +. ...-.....++++|++..|..+ +..+.|..+|++... ...+.. ......++++. .+.++++
T Consensus 151 dG~~~~~--~~--~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~-~~~ly~~ 224 (316)
T 1ijq_A 151 NGVDIYS--LV--TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVF-EDKVFWT 224 (316)
T ss_dssp TSCCEEE--EE--CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEE-TTEEEEE
T ss_pred CCCCeEE--EE--ECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEE-CCEEEEE
Confidence 6543321 11 1233567889999877666555 456789999987432 222221 12345677775 3556666
Q ss_pred eeCCceeeecC
Q 014125 372 SSGHRRFPVDD 382 (430)
Q Consensus 372 ~~~d~~~~vw~ 382 (430)
-...+.|...+
T Consensus 225 d~~~~~V~~~~ 235 (316)
T 1ijq_A 225 DIINEAIFSAN 235 (316)
T ss_dssp ETTTTEEEEEE
T ss_pred ECCCCeEEEEe
Confidence 65566666654
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.65 E-value=3.9e-05 Score=72.00 Aligned_cols=208 Identities=18% Similarity=0.136 Sum_probs=117.6
Q ss_pred eEEEEeCCCcEEEEeccCCceeeeeecccccccc---cc-eEEEEECCCCcEEEEEcCCeEEEEEcCCCCCccccccccc
Q 014125 140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEI---TA-AFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLK 215 (430)
Q Consensus 140 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~---~~-v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~ 215 (430)
.+++++.++.|..+|..+|+.+..+......... .. ...++. .++..++.+.++.|.-+|..++...++......
T Consensus 70 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~-~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~ 148 (582)
T 1flg_A 70 VIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI-YGDKVFFGTLDASVVALNKNTGKVVWKKKFADH 148 (582)
T ss_dssp EEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE-ETTEEEEEETTTEEEEEESSSCCEEEEEECSCG
T ss_pred EEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE-ECCEEEEEeCCCEEEEEECCCCCEEeeecCCCC
Confidence 4555555344999999999998887654321100 00 011222 245555566899999999988655443211100
Q ss_pred C-CCCCCCcceEEEEEcC-CCCceEEEec------CCCeEEEEEcCCceeeEEeeccccC--------------------
Q 014125 216 G-NKEGQAGIMSAIAFSP-THTGMLAIGS------YSQTSAIYREDNMELLYVLHGQEGG-------------------- 267 (430)
Q Consensus 216 ~-~~~~~~~~v~~~~~~~-~~~~~l~~~~------~dg~v~~~d~~~~~~~~~~~~~~~~-------------------- 267 (430)
. .......++ +.=.. ++...+++++ .++.|+.+|..+++.+.........
T Consensus 149 ~~~~~~~~sP~--v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w 226 (582)
T 1flg_A 149 GAGYTMTGAPT--IVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSW 226 (582)
T ss_dssp GGTCBCCSCCE--EEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTS
T ss_pred CcCcccccCCE--EeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccC
Confidence 0 000011111 11111 1122566655 3789999999999887655421100
Q ss_pred ---------------------eEEEEEccCCCEEEEEecC-------------------C----CeEEEEeCCCCceEEE
Q 014125 268 ---------------------VTHVQFSRDGNYLYTGGRK-------------------D----PYILCWDLRKAVQVVY 303 (430)
Q Consensus 268 ---------------------i~~~~~~~~~~~l~~~~~~-------------------d----~~i~i~d~~~~~~~~~ 303 (430)
-..++++|....++.+... | +.|..+|..+++....
T Consensus 227 ~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~ 306 (582)
T 1flg_A 227 PDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWF 306 (582)
T ss_dssp CBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEE
T ss_pred CCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEE
Confidence 0135666777777776621 2 5899999999876654
Q ss_pred Eeeccc------CCccceEEEEEc-CCCC---EEEEEccCCcEEEEEcCCCCeecccc
Q 014125 304 KLYRSS------EHTNQRILFDIE-PSGR---HLGTGGQDGLVHIYDLQTGKWISGFQ 351 (430)
Q Consensus 304 ~~~~~~------~~~~~v~~~~~~-~~~~---~l~~~~~dg~i~vwd~~~~~~~~~~~ 351 (430)
...... ....++. +... .+|+ .++.++.+|.++++|..+|+++..+.
T Consensus 307 ~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~ 363 (582)
T 1flg_A 307 YQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFP 363 (582)
T ss_dssp EESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccc
Confidence 332111 0112222 2222 4674 78889999999999999999876544
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.64 E-value=0.00012 Score=70.87 Aligned_cols=210 Identities=12% Similarity=0.011 Sum_probs=125.8
Q ss_pred CeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCc----eeeeeecccccccccceEEEEECCCCcEEE-EE-cC
Q 014125 120 ESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGL----LRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YN 193 (430)
Q Consensus 120 ~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d 193 (430)
..+..++|.+. ++.++++-...+.|+.+++.... ....+... ...+..|++.+.+..|+ +. ..
T Consensus 424 ~~~~gl~~d~~------~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~-----l~~P~GLAvD~~~~~LY~tD~~~ 492 (791)
T 3m0c_C 424 RNVVALDTEVA------SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD-----IQAPDGLAVDWIHSNIYWTDSVL 492 (791)
T ss_dssp SSEEEEEEETT------TTEEEEEETTTTEEEEEEC--------CEEEECSS-----CSCCCEEEEETTTTEEEEEETTT
T ss_pred CceEEEeeccc------CCeeEEeeccceeEEEEeccCCCCCcceeEEEecC-----CCCcceeeeeecCCcEEEEecCC
Confidence 45667777331 34455555666788888886531 12222211 12556899988886666 44 67
Q ss_pred CeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCC-CeEEEEEcCCceeeEEeeccccCeEEEE
Q 014125 194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS-QTSAIYREDNMELLYVLHGQEGGVTHVQ 272 (430)
Q Consensus 194 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~v~~~d~~~~~~~~~~~~~~~~i~~~~ 272 (430)
+.|.+.++..... . .+. .........|+++|..+.++++-... +.|...++........+...-.....|+
T Consensus 493 ~~I~v~~ldG~~~--~---~l~---~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLa 564 (791)
T 3m0c_C 493 GTVSVADTKGVKR--K---TLF---RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGIT 564 (791)
T ss_dssp TEEEEEETTSSSE--E---EEE---ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEE
T ss_pred CeEEEEeCCCCeE--E---EEE---eCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEE
Confidence 8899999864211 1 111 11223478999999656566554333 7899999875544433333335688999
Q ss_pred EccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccc
Q 014125 273 FSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQ 351 (430)
Q Consensus 273 ~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 351 (430)
+++.+..|+.+....+.|..+++......... ...........|++.. +.++++-...+.|...|..+++.+..+.
T Consensus 565 vD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~--~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 565 LDLLSGRLYWVDSKLHSISSIDVNGGNRKTIL--EDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDVNLLA 640 (791)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCSCEEEE--ECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EecCCCeEEEEeCCCCcEEEEecCCCceEEEe--cCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCCcceEEee
Confidence 99888888888767789999999765433221 1112223445666643 3444455566788888887776655553
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=98.63 E-value=0.0002 Score=62.46 Aligned_cols=217 Identities=11% Similarity=0.135 Sum_probs=138.6
Q ss_pred CCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccc
Q 014125 135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTL 214 (430)
Q Consensus 135 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~ 214 (430)
+|..+.+|.-. ..++.++|+++...+..+.... .|.-..|-.+. .|+--.+..|+-|++.....+.+.+...
T Consensus 74 nP~~~iiALra-g~~lQiFnle~K~klks~~~~e------~VvfWkWis~~-~l~lVT~taVyHWsi~~~s~P~kvFdR~ 145 (494)
T 1bpo_A 74 NPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD------DVTFWKWISLN-TVALVTDNAVYHWSMEGESQPVKMFDRH 145 (494)
T ss_dssp CSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS------CCCEEEEEETT-EEEEECSSEEEEEESSSSCCCEEEEECC
T ss_pred CCCCcEEEEec-CCeEEEEchHHhhhhcceecCC------CceEEEecCCC-eEEEEcCCeeEEecccCCCCchhheecc
Confidence 55566666654 6789999999998888777654 66677786544 4554467899999997644443333221
Q ss_pred cCCCCCCCcceEEEEEcCCCCceEEEec------CCCeEEEEEcCCceeeEEeeccccCeEEEEEccC--CCEEEEEecC
Q 014125 215 KGNKEGQAGIMSAIAFSPTHTGMLAIGS------YSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRD--GNYLYTGGRK 286 (430)
Q Consensus 215 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~------~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~~ 286 (430)
. .+. ...|..-..+++...++++|- -.|.+.+|..+ .+..+.+++|.+....+...-+ ...|++-...
T Consensus 146 ~-~L~--~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~e-r~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r 221 (494)
T 1bpo_A 146 S-SLA--GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD-RKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVR 221 (494)
T ss_dssp G-GGT--TCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEEST-TCCEEEECCSEEEEEEEECTTCSSEEEEEEEEEC
T ss_pred h-hcc--cceEEEEEECCCCCeEEEEeecccCCcccceEEEeecc-ccccchheeeeeeeEEEecCCCCCCceEEEEEEe
Confidence 1 111 345777777885555555553 24778899886 4455677888766655554321 1223333212
Q ss_pred ---CCeEEEEeCCCC--------ceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccC
Q 014125 287 ---DPYILCWDLRKA--------VQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAAD 355 (430)
Q Consensus 287 ---d~~i~i~d~~~~--------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 355 (430)
.+.+++.++... ++.....+.......-..++..++.-..+..-+.-|.|++||+.++.++..-+-...
T Consensus 222 ~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~ 301 (494)
T 1bpo_A 222 GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGE 301 (494)
T ss_dssp STTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred cCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCC
Confidence 378999998543 112222222233455667888888888888889999999999999999887665555
Q ss_pred CeeEEEEc
Q 014125 356 TVNGFSFH 363 (430)
Q Consensus 356 ~v~~~~~~ 363 (430)
+|-.-+-+
T Consensus 302 ~iF~t~~~ 309 (494)
T 1bpo_A 302 TIFVTAPH 309 (494)
T ss_dssp CEEEEEEE
T ss_pred ceEEeccc
Confidence 55444433
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.62 E-value=0.00025 Score=63.29 Aligned_cols=227 Identities=7% Similarity=-0.024 Sum_probs=137.3
Q ss_pred eEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCCcccccccccCC
Q 014125 140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYSTLKGN 217 (430)
Q Consensus 140 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~~~~~~~~~~ 217 (430)
+|+.+ ....|+..++............ ..+..++|++.+..|+ +. ..+.|+.+++......... ..+
T Consensus 85 ~ll~~-~~~~I~~i~l~~~~~~~~~~~~------~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~-~~~--- 153 (400)
T 3p5b_L 85 YLFFT-NRHEVRKMTLDRSEYTSLIPNL------RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY-DTV--- 153 (400)
T ss_dssp EEEEE-ETTEEEEECTTSCSCEEEECSC------SCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCC-EEE---
T ss_pred eeEEe-ccceeEEEccCCcceeEecccc------CcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcc-eEE---
Confidence 34433 3467999998876554443322 2678999998776666 54 6788998888642110000 011
Q ss_pred CCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecC-CCeEEEEeCC
Q 014125 218 KEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRK-DPYILCWDLR 296 (430)
Q Consensus 218 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-d~~i~i~d~~ 296 (430)
..........+++.+.+++++++-...+.|.+.++........+.........|+++|.+..|+.+... .+.|...++.
T Consensus 154 ~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~d 233 (400)
T 3p5b_L 154 ISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN 233 (400)
T ss_dssp ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETT
T ss_pred EeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCC
Confidence 111223577899988677778887788999999987655444444334457899999987777776522 3789888887
Q ss_pred CCceEEEEeecccCCccceEEEEEcCCCCEEEEE-ccCCcEEEEEcCCCCeeccccc--ccCCeeEEEEcCCCcEEEEee
Q 014125 297 KAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTG-GQDGLVHIYDLQTGKWISGFQA--AADTVNGFSFHPFLPMAASSS 373 (430)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~ 373 (430)
....... . ...-.....++++|++..|+.+ ...+.|..+|++.......... ......+++.. .+.++.+-.
T Consensus 234 G~~~~~~-~---~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~ 308 (400)
T 3p5b_L 234 GVDIYSL-V---TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDI 308 (400)
T ss_dssp SCSCEEE-E---CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEES
T ss_pred CCccEEE-E---ECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecC
Confidence 6533321 1 1233567889999877766655 4567899999875433222221 12344566663 344555554
Q ss_pred CCceeeecC
Q 014125 374 GHRRFPVDD 382 (430)
Q Consensus 374 ~d~~~~vw~ 382 (430)
..+.|...+
T Consensus 309 ~~~~V~~~~ 317 (400)
T 3p5b_L 309 INEAIFSAN 317 (400)
T ss_dssp SSCSEEEEE
T ss_pred CCCeEEEEE
Confidence 455555443
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.62 E-value=3.6e-05 Score=69.69 Aligned_cols=206 Identities=14% Similarity=0.086 Sum_probs=118.2
Q ss_pred cCccCCC--CceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEE-------CCCCcEEE-EEcCC------
Q 014125 131 MSASDPT--SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAF-------NPTGTKIF-AGYNK------ 194 (430)
Q Consensus 131 ~~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~-------~~~~~~l~-~~~d~------ 194 (430)
..+++|. ++++++....+.|++.|+.++.......... ........++| ++++..|+ +...+
T Consensus 143 ~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~--~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~ 220 (496)
T 3kya_A 143 RLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINT--IPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES 220 (496)
T ss_dssp EEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTT--SSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred EEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCc--cccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence 3344662 4444444445679999998877665544322 12235789999 99998666 44332
Q ss_pred -eEEEEEcCCCCCcccc-c--ccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcC-------Ccee------
Q 014125 195 -SVRVFDVHRPGRDFEK-Y--STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED-------NMEL------ 257 (430)
Q Consensus 195 -~i~v~d~~~~~~~~~~-~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~-------~~~~------ 257 (430)
.|.+++....+. +.. . ..+. . -.....++++|+++.++++-..++.|..+|+. ++..
T Consensus 221 ~~V~~i~r~~~G~-~~~~~~~~~v~-~----~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~ 294 (496)
T 3kya_A 221 PSVYIIKRNADGT-FDDRSDIQLIA-A----YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVK 294 (496)
T ss_dssp EEEEEEECCTTSC-CSTTSCEEEEE-E----ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGG
T ss_pred ceEEEEecCCCCc-eeecccceeec-c----CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccc
Confidence 255665332111 110 0 0111 0 11245678899777788888889999999987 4443
Q ss_pred -----eEE-ee-ccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEE---EEeecc---cC---------Cccce
Q 014125 258 -----LYV-LH-GQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVV---YKLYRS---SE---------HTNQR 315 (430)
Q Consensus 258 -----~~~-~~-~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~---~~~~~~---~~---------~~~~v 315 (430)
... +. ........|+|+|+|+.|+.+....+.|+.++........ ..+... .+ .-...
T Consensus 295 ~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P 374 (496)
T 3kya_A 295 NNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNP 374 (496)
T ss_dssp GCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSE
T ss_pred ccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCC
Confidence 111 11 1223467999999999777776578899996654322111 111110 11 11223
Q ss_pred E-EEEEc-------CCCCEEEEEccCCcEEEEEcCCCC
Q 014125 316 I-LFDIE-------PSGRHLGTGGQDGLVHIYDLQTGK 345 (430)
Q Consensus 316 ~-~~~~~-------~~~~~l~~~~~dg~i~vwd~~~~~ 345 (430)
. .+... ++|.++++-....+|+.++ .++.
T Consensus 375 ~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~ 411 (496)
T 3kya_A 375 CQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI 411 (496)
T ss_dssp EEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB
T ss_pred eEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC
Confidence 4 44554 4566777767788899998 4453
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.60 E-value=5.2e-05 Score=64.80 Aligned_cols=206 Identities=12% Similarity=0.153 Sum_probs=126.0
Q ss_pred CCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECC----CCc---EEEEE--c--CCeEEEEEcCC
Q 014125 135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNP----TGT---KIFAG--Y--NKSVRVFDVHR 203 (430)
Q Consensus 135 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~---~l~~~--~--d~~i~v~d~~~ 203 (430)
.|...+++.....+-+.+||+ +|+.+..+... .+..+..-| .++ +++++ . +++|.+|++..
T Consensus 37 dp~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~g-------~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp 108 (355)
T 3amr_A 37 TPQNSKLITTNKKSGLVVYSL-DGKMLHSYNTG-------KLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDG 108 (355)
T ss_dssp CGGGCEEEEEETTTEEEEEET-TSCEEEEECCS-------CEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECT
T ss_pred CCCccEEEEEcCCCCEEEEcC-CCcEEEEccCC-------CcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECC
Confidence 445566777777888999999 88888777541 333444333 222 23344 3 58899998854
Q ss_pred CCCcccccccccCCCCCCCcceEEEEE--cCCCC-ceEEEecCCCeEEEEEcC-------CceeeEEeeccccCeEEEEE
Q 014125 204 PGRDFEKYSTLKGNKEGQAGIMSAIAF--SPTHT-GMLAIGSYSQTSAIYRED-------NMELLYVLHGQEGGVTHVQF 273 (430)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~-~~l~~~~~dg~v~~~d~~-------~~~~~~~~~~~~~~i~~~~~ 273 (430)
....+................+..+++ +|..+ .++++...+|.+..|++. +.+.++++.. .+.+..+..
T Consensus 109 ~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~Egcvv 187 (355)
T 3amr_A 109 KNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAA 187 (355)
T ss_dssp TTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEE
T ss_pred CCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEE
Confidence 333232221110000011134566676 67444 367778888999999883 3355666663 467889999
Q ss_pred ccCCCEEEEEecCCCeEEEEeCCCCc----eEEEEeecccCCccceEEEEE--cCCCC-EEEEEc-cCCcEEEEEcC-CC
Q 014125 274 SRDGNYLYTGGRKDPYILCWDLRKAV----QVVYKLYRSSEHTNQRILFDI--EPSGR-HLGTGG-QDGLVHIYDLQ-TG 344 (430)
Q Consensus 274 ~~~~~~l~~~~~~d~~i~i~d~~~~~----~~~~~~~~~~~~~~~v~~~~~--~~~~~-~l~~~~-~dg~i~vwd~~-~~ 344 (430)
.+....|+++- .+.-|..++.+... ..+... ........+..+++ .++++ ||++++ .++++.+||.. +.
T Consensus 188 Dd~~g~Lyv~e-Ed~GIw~~da~p~~~~~~~~v~~~-~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~ 265 (355)
T 3amr_A 188 DDEYGRLYIAE-EDEAIWKFSAEPDGGSNGTVIDRA-DGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKN 265 (355)
T ss_dssp ETTTTEEEEEE-TTTEEEEEECSTTSCSCCEEEEEB-SSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTC
T ss_pred cCCCCeEEEec-ccceEEEEeCCcCCCCCceEEEEe-cCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCC
Confidence 99888999998 77777777755221 222221 11222335777777 45555 666555 56789999997 66
Q ss_pred Ceecccc
Q 014125 345 KWISGFQ 351 (430)
Q Consensus 345 ~~~~~~~ 351 (430)
+.+..|.
T Consensus 266 ~~vg~f~ 272 (355)
T 3amr_A 266 KYVADFR 272 (355)
T ss_dssp CEEEEEE
T ss_pred cEEEEEE
Confidence 7766664
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.55 E-value=0.00018 Score=61.98 Aligned_cols=221 Identities=9% Similarity=0.019 Sum_probs=132.6
Q ss_pred CCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCCcccccccccCCCCCCCcc
Q 014125 147 DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGI 224 (430)
Q Consensus 147 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 224 (430)
...|+..++........+.... ...+.++.|++.+..|+ +. ..+.|..+++......... . ......
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~----~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~---~----~~~l~~ 80 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGG----LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNV---V----VSGLLS 80 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEE----EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEE---E----EECCSC
T ss_pred cCeEEEEECCCCceEEEEEecC----CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEE---E----cCCCCC
Confidence 4568999987764211111110 11566899998766665 55 6788999988653211100 0 011123
Q ss_pred eEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEec-CCCeEEEEeCCCCceEEE
Q 014125 225 MSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGR-KDPYILCWDLRKAVQVVY 303 (430)
Q Consensus 225 v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-~d~~i~i~d~~~~~~~~~ 303 (430)
...+++.+.+++++++-...+.|.++++........+.........++++|.+..|+.+.. ..+.|...++.......
T Consensus 81 p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~- 159 (318)
T 3sov_A 81 PDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFI- 159 (318)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEE-
T ss_pred ccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEE-
Confidence 5678888767777787777889999998754333333333456789999998777777662 25788888887543221
Q ss_pred EeecccCCccceEEEEEcCCCCEEEEE-ccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeecC
Q 014125 304 KLYRSSEHTNQRILFDIEPSGRHLGTG-GQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDD 382 (430)
Q Consensus 304 ~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~ 382 (430)
.. ...-.....++++|++..|..+ +..+.|..+|++................++++.. +.++.+-...+.|...+
T Consensus 160 ~~---~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~ 235 (318)
T 3sov_A 160 II---NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACN 235 (318)
T ss_dssp EE---CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEE
T ss_pred EE---ECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEE
Confidence 11 1223456789999976665554 4567899999874332222222334556777753 34555544556666554
Q ss_pred C
Q 014125 383 F 383 (430)
Q Consensus 383 ~ 383 (430)
.
T Consensus 236 ~ 236 (318)
T 3sov_A 236 K 236 (318)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=98.53 E-value=8.7e-07 Score=85.10 Aligned_cols=220 Identities=12% Similarity=0.013 Sum_probs=123.5
Q ss_pred eeeeeeeccccCccCCCCceEEEE-eCCCcEEEEeccC----CceeeeeecccccccccceEEEEECCCCcEEE-EE-cC
Q 014125 121 SVYDFCWFPHMSASDPTSCVFAST-TRDHPIHLWDATT----GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YN 193 (430)
Q Consensus 121 ~v~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~vwd~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d 193 (430)
.+..++| ++.+..|+.+ ...+.|+.+++.. ......+... ......+++.+.+..|+ +. ..
T Consensus 407 ~p~gla~-------d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~-----~~~P~glavD~~~g~LY~tD~~~ 474 (699)
T 1n7d_A 407 NVVALDT-------EVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD-----IQAPDGLAVDWIHSNIYWTDSVL 474 (699)
T ss_dssp TCCCCEE-------ETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSC-----C--CCCEECCCSSSBCEECCTTT
T ss_pred ceEEEcc-------ccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCC-----CCCcceEEEEeeCCcEEEEeccC
Confidence 4456666 4444444444 4567899998875 1211111110 11345688876554444 43 56
Q ss_pred CeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCC-CeEEEEEcCCceeeEEeeccccCeEEEE
Q 014125 194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS-QTSAIYREDNMELLYVLHGQEGGVTHVQ 272 (430)
Q Consensus 194 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~v~~~d~~~~~~~~~~~~~~~~i~~~~ 272 (430)
+.|.++++..... . .+. .........++++|.++.++++-... +.|..+++........+...-.....|+
T Consensus 475 ~~I~v~d~dg~~~--~---~l~---~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGla 546 (699)
T 1n7d_A 475 GTVSVADTKGVKR--K---TLF---REQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGIT 546 (699)
T ss_dssp SCEEEEBSSSCCE--E---EEC---CCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEE
T ss_pred CeEEEEecCCCce--E---EEE---eCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEE
Confidence 7899988764211 1 111 11112356788998666555554333 7888888764332222222234467899
Q ss_pred EccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccccc
Q 014125 273 FSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQA 352 (430)
Q Consensus 273 ~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 352 (430)
|+|++..|+.+....+.|..+++....... +............+++..+ .++++....+.|..++..+++.+..+..
T Consensus 547 vd~~~~~LY~aD~~~~~I~~~d~dG~~~~~--~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~~ 623 (699)
T 1n7d_A 547 LDLLSGRLYWVDSKLHSISSIDVNGGNRKT--ILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLAE 623 (699)
T ss_dssp ECTTTCCEEEEETTTTEEEEECSSSSCCEE--ECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCCT
T ss_pred EeccCCEEEEEecCCCeEEEEccCCCceEE--EEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEeec
Confidence 999888787777577899999997543222 1111111223344555543 4555556678899999888887776654
Q ss_pred ccCCeeEEEEc
Q 014125 353 AADTVNGFSFH 363 (430)
Q Consensus 353 ~~~~v~~~~~~ 363 (430)
......+|++.
T Consensus 624 ~~~~P~~i~v~ 634 (699)
T 1n7d_A 624 NLLSPEDMVLF 634 (699)
T ss_dssp TCSSCCCCCBC
T ss_pred CCCCCcEEEEe
Confidence 33344455443
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.52 E-value=0.00039 Score=67.40 Aligned_cols=220 Identities=7% Similarity=-0.022 Sum_probs=130.5
Q ss_pred CCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCCcccccccccCCCCCCCc
Q 014125 146 RDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAG 223 (430)
Q Consensus 146 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 223 (430)
....|+..++............. .+..++|++.+..|+ +. ..+.|+.+++......... ..+. .....
T Consensus 402 n~~~Ir~i~l~~~~~~~l~~~~~------~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~-~~vi---~~~l~ 471 (791)
T 3m0c_C 402 NRHEVRKMTLDRSEYTSLIPNLR------NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY-DTVI---SRDIQ 471 (791)
T ss_dssp CBSSEEEECTTSCCCEEEECSCS------SEEEEEEETTTTEEEEEETTTTEEEEEEC--------C-EEEE---CSSCS
T ss_pred cccceeEeeccCCcceeeecCCC------ceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcce-eEEE---ecCCC
Confidence 34568888887665444433222 677899998666665 54 5678888888642110000 0111 11223
Q ss_pred ceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCC-CeEEEEeCCCCceEE
Q 014125 224 IMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKD-PYILCWDLRKAVQVV 302 (430)
Q Consensus 224 ~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d-~~i~i~d~~~~~~~~ 302 (430)
....|++.+.+++++++-...+.|.+.++........+.........|+++|.+.+|+.+.... +.|...++.......
T Consensus 472 ~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~ 551 (791)
T 3m0c_C 472 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS 551 (791)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE
T ss_pred CcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEE
Confidence 4567899886777888888889999999975544433433445678999999877777776233 789999987654332
Q ss_pred EEeecccCCccceEEEEEcCCCCEEEEE-ccCCcEEEEEcCCCCeecccccc--cCCeeEEEEcCCCcEEEEeeCCceee
Q 014125 303 YKLYRSSEHTNQRILFDIEPSGRHLGTG-GQDGLVHIYDLQTGKWISGFQAA--ADTVNGFSFHPFLPMAASSSGHRRFP 379 (430)
Q Consensus 303 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~s~~~d~~~~ 379 (430)
.. .........|++++.+..|+.+ ...+.|...+++.......+... .....+|++.. +.+.++-...+.|.
T Consensus 552 -lv---~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~ 626 (791)
T 3m0c_C 552 -LV---TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIF 626 (791)
T ss_dssp -EE---CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEE
T ss_pred -EE---eCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEE
Confidence 11 2233567889999876666655 44567999998754433322221 12344666533 23333333344444
Q ss_pred e
Q 014125 380 V 380 (430)
Q Consensus 380 v 380 (430)
.
T Consensus 627 ~ 627 (791)
T 3m0c_C 627 S 627 (791)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.52 E-value=0.00014 Score=65.57 Aligned_cols=239 Identities=13% Similarity=0.099 Sum_probs=132.4
Q ss_pred ceeEEEECc-CCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCce
Q 014125 62 FLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV 140 (430)
Q Consensus 62 ~v~~~~~sp-~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (430)
....|+++| ++..|..+...+.|+.+|+..+... ...........++| +++++.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~------------------~~~~~~~~P~~ia~-------d~~G~~ 192 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVS------------------TVYSGLSKVRTICW-------THEADS 192 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEE------------------EEECCCSCEEEEEE-------CTTSSE
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEE------------------EEecCCCCcceEEE-------eCCCCE
Confidence 457899998 4555555555478888988754221 11112345667777 778885
Q ss_pred EEEEeC-CC----cEEEEeccCCcee--eeeecccccccccceEEEEECC-CCcEEEEE-cCCeEEEEEcCCCCCccccc
Q 014125 141 FASTTR-DH----PIHLWDATTGLLR--CTYRAYDAVDEITAAFSVAFNP-TGTKIFAG-YNKSVRVFDVHRPGRDFEKY 211 (430)
Q Consensus 141 l~~~~~-dg----~i~vwd~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~-~d~~i~v~d~~~~~~~~~~~ 211 (430)
|+.+.. ++ .+.+.+. .+... ..+.. ......++++| ++.++++. .++.|..++...... ...
T Consensus 193 lyvad~~~~~~~~~v~~~~~-~g~~~~~~~l~~------~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~--~~~ 263 (430)
T 3tc9_A 193 MIITNDQNNNDRPNNYILTR-ESGFKVITELTK------GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQET--TPL 263 (430)
T ss_dssp EEEEECCSCTTSEEEEEEEG-GGTSCSEEEEEE------CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEE--EEE
T ss_pred EEEEeCCCCcccceEEEEeC-CCceeeeeeecc------CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcE--EEE
Confidence 655544 22 2333343 33222 22221 11456889999 66666665 678899999864211 011
Q ss_pred ccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCC--cee--eEEeecc---------------ccCeE-EE
Q 014125 212 STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN--MEL--LYVLHGQ---------------EGGVT-HV 271 (430)
Q Consensus 212 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~--~~~--~~~~~~~---------------~~~i~-~~ 271 (430)
.. .+.......++|+|++..++++-...+.|..++... ++. ...+.+. -.... .+
T Consensus 264 ~~-----~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv 338 (430)
T 3tc9_A 264 FT-----IQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGT 338 (430)
T ss_dssp EE-----CSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEE
T ss_pred EE-----cCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceE
Confidence 00 111234678999995554677777788999987653 221 1122111 01122 44
Q ss_pred EEc--------cCCCEEEEEecCCCeEEEEeCCCCceEEEEeec----ccC----------CccceEEEEEcCC-CCEEE
Q 014125 272 QFS--------RDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYR----SSE----------HTNQRILFDIEPS-GRHLG 328 (430)
Q Consensus 272 ~~~--------~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~----~~~----------~~~~v~~~~~~~~-~~~l~ 328 (430)
+.. ++| .|+++....+.|+.++.. + ........ ..+ .-.....++++|+ +.+++
T Consensus 339 ~v~~~~y~~~D~~g-~lyvaD~~n~~I~~i~~~-G-~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyV 415 (430)
T 3tc9_A 339 FVKNPAYKGSSDEY-DFYFCDRENHCIRILTPQ-G-RVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFI 415 (430)
T ss_dssp EEECGGGTTSSCCE-EEEEEEGGGTEEEEECTT-S-EEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEE
T ss_pred EEccccccccCCCC-eEEEEECCCcEEEEECCC-C-cEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEE
Confidence 543 234 455555467889988843 3 22222211 001 1225788999994 66666
Q ss_pred EEccCCcEEEEEcC
Q 014125 329 TGGQDGLVHIYDLQ 342 (430)
Q Consensus 329 ~~~~dg~i~vwd~~ 342 (430)
+-..+++|+.++++
T Consensus 416 aD~~n~rIr~i~~e 429 (430)
T 3tc9_A 416 GDRENRRIRKIGYE 429 (430)
T ss_dssp EEGGGTEEEEEEEC
T ss_pred EECCCCeEEEEccC
Confidence 65667788888764
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.48 E-value=0.00049 Score=59.63 Aligned_cols=278 Identities=9% Similarity=0.026 Sum_probs=142.9
Q ss_pred CCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCc
Q 014125 60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC 139 (430)
Q Consensus 60 ~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (430)
...+.+|.|.+++..+++ +.+|.|. ...+.++.=...... .......+.++.+ ++ +.
T Consensus 35 ~~~~~~v~~~~~~~~~~~-G~~g~i~-~s~DgG~tW~~~~~~-------------~~~~~~~~~~i~~-------~~-~~ 91 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLV-GVNATLM-ETRDGGQTWEPRTLV-------------LDHSDYRFNSVSF-------QG-NE 91 (327)
T ss_dssp SSCEEEEEESSSSCEEEE-ETTTEEE-EESSTTSSCEECCCC-------------CSCCCCEEEEEEE-------ET-TE
T ss_pred CCcEEEEEECCCCcEEEE-cCCCeEE-EeCCCCCCCeECCCC-------------CCCCCccEEEEEe-------cC-Ce
Confidence 346899999887777774 4567552 233322210000000 0011346777777 33 33
Q ss_pred eEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccCCCC
Q 014125 140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKE 219 (430)
Q Consensus 140 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~ 219 (430)
.++ ++..|.|.. ....|+.-....... .....+..+.+.+++..++++.++.| |.....+..+.... .
T Consensus 92 ~~~-~g~~g~i~~-S~DgG~tW~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~g~v--~~S~DgG~tW~~~~------~ 159 (327)
T 2xbg_A 92 GWI-VGEPPIMLH-TTDGGQSWSQIPLDP--KLPGSPRLIKALGNGSAEMITNVGAI--YRTKDSGKNWQALV------Q 159 (327)
T ss_dssp EEE-EEETTEEEE-ESSTTSSCEECCCCT--TCSSCEEEEEEEETTEEEEEETTCCE--EEESSTTSSEEEEE------C
T ss_pred EEE-EECCCeEEE-ECCCCCCceECcccc--CCCCCeEEEEEECCCCEEEEeCCccE--EEEcCCCCCCEEee------c
Confidence 344 445563332 222333322222111 01124567777777777777766654 33333344443322 1
Q ss_pred CCCcceEEEEEcCCCCceEEEecCCCeEEEEEc--CCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCC
Q 014125 220 GQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRE--DNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRK 297 (430)
Q Consensus 220 ~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~ 297 (430)
.....+..+.+.| ++.+++++...+..+-.|- .+.+.+. ......+..+.+.+++..++ .+ .+|.+++.+...
T Consensus 160 ~~~~~~~~~~~~~-~~~~~~~g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~-~~-~~G~~~~s~~D~ 234 (327)
T 2xbg_A 160 EAIGVMRNLNRSP-SGEYVAVSSRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWM-IV-NGGKIAFSDPDN 234 (327)
T ss_dssp SCCCCEEEEEECT-TSCEEEEETTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEE-EE-TTTEEEEEETTE
T ss_pred CCCcceEEEEEcC-CCcEEEEECCCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEE-Ee-CCceEEEecCCC
Confidence 2234688899998 5556666654333333342 2223331 23446788999999987554 44 688887764221
Q ss_pred CceEEEEeecc-cCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccc---cccCCeeEEEEcCCCcEEEEee
Q 014125 298 AVQVVYKLYRS-SEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQ---AAADTVNGFSFHPFLPMAASSS 373 (430)
Q Consensus 298 ~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~s~~ 373 (430)
+ ......... ......+..+.+.+++..++++. +|.| ++..+.++.-..+. .....+.++.|.+++. +++++
T Consensus 235 G-~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G 310 (327)
T 2xbg_A 235 S-ENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILG 310 (327)
T ss_dssp E-EEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEEC
T ss_pred C-CeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEc
Confidence 2 111111111 11223578899998887777665 6666 44555554433333 2235678888876555 44444
Q ss_pred CCceeeec
Q 014125 374 GHRRFPVD 381 (430)
Q Consensus 374 ~d~~~~vw 381 (430)
.+|.+.-+
T Consensus 311 ~~G~i~~~ 318 (327)
T 2xbg_A 311 QKGILLRY 318 (327)
T ss_dssp STTEEEEE
T ss_pred CCceEEEE
Confidence 45544433
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=0.0015 Score=61.90 Aligned_cols=203 Identities=10% Similarity=-0.021 Sum_probs=126.6
Q ss_pred CeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE-cCCeEE
Q 014125 120 ESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVR 197 (430)
Q Consensus 120 ~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~ 197 (430)
.....++|.+. ++.++++-..++.|..+++........+.... ..+..+++.+.+..|+ +. ..+.|.
T Consensus 37 ~~~~~l~~d~~------~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~-----~~P~GlAvD~~~~~LY~tD~~~~~I~ 105 (628)
T 4a0p_A 37 KEASALDFDVT------DNRIYWTDISLKTISRAFMNGSALEHVVEFGL-----DYPEGMAVDWLGKNLYWADTGTNRIE 105 (628)
T ss_dssp SCEEEEEEETT------TTEEEEEETTTTEEEEEETTSCSCEEEECSSC-----SCCCEEEEETTTTEEEEEETTTTEEE
T ss_pred CceEEEEEECC------CCEEEEEECCCCeEEEEECCCCCcEEEEeCCC-----CCcceEEEEeCCCEEEEEECCCCEEE
Confidence 35677888431 34455555667889999887654433332211 1456888887766666 44 568899
Q ss_pred EEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEe-cCCCeEEEEEcCCceeeEEeeccccCeEEEEEccC
Q 014125 198 VFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIG-SYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRD 276 (430)
Q Consensus 198 v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~ 276 (430)
+.+++.... . .+. .........++++|..+.++.+- +..+.|...++.......... .-.....|+++++
T Consensus 106 v~~~dG~~~--~---~l~---~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~-~~~~P~GlalD~~ 176 (628)
T 4a0p_A 106 VSKLDGQHR--Q---VLV---WKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP-NVGRANGLTIDYA 176 (628)
T ss_dssp EEETTSTTC--E---EEE---CSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-SCSSEEEEEEETT
T ss_pred EEecCCCcE--E---EEE---eCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC-CCCCcceEEEccc
Confidence 998864321 1 111 11223468999999556555553 235788888886544333333 3456789999999
Q ss_pred CCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeec
Q 014125 277 GNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWIS 348 (430)
Q Consensus 277 ~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 348 (430)
+..|+.+....+.|..+|+....... +.. .......+++.. +..+++-...+.|...|..+++...
T Consensus 177 ~~~LY~aD~~~~~I~~~d~dG~~~~v--~~~---~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~ 242 (628)
T 4a0p_A 177 KRRLYWTDLDTNLIESSNMLGLNREV--IAD---DLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRT 242 (628)
T ss_dssp TTEEEEEETTTTEEEEEETTSCSCEE--EEE---CCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCE
T ss_pred cCEEEEEECCCCEEEEEcCCCCceEE--eec---cCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCceE
Confidence 88888887678899999997654422 211 223445677765 4445555557889999977765433
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.32 E-value=0.00055 Score=61.70 Aligned_cols=241 Identities=12% Similarity=0.100 Sum_probs=130.5
Q ss_pred ceeEEEECcC--CceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCc
Q 014125 62 FLKGIKWSPD--GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC 139 (430)
Q Consensus 62 ~v~~~~~sp~--~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (430)
....|+|+|+ +..|..+...+.|+.++..++... ...........+++ +++++
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~------------------~~~~~~~~P~giav-------d~dG~ 194 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVD------------------IKTTNIGQCADVNF-------TLNGD 194 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEE------------------EECCCCSCEEEEEE-------CTTCC
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEE------------------EeecCCCCccEEEE-------CCCCC
Confidence 4568999985 334444443378999988655321 11112234666777 77888
Q ss_pred eEEEEeCC---C-cEEEEeccCCcee-eeeecccccccccceEEEEECC-CCcEEEEE-cCCeEEEEEcCCCCCcccccc
Q 014125 140 VFASTTRD---H-PIHLWDATTGLLR-CTYRAYDAVDEITAAFSVAFNP-TGTKIFAG-YNKSVRVFDVHRPGRDFEKYS 212 (430)
Q Consensus 140 ~l~~~~~d---g-~i~vwd~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~ 212 (430)
++++.... . .+...+...+... ..+.. ......++++| ++.++++. .++.|+.++...+... ....
T Consensus 195 lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~~------~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~-~~~~ 267 (433)
T 4hw6_A 195 MVVVDDQSSDTNTGIYLFTRASGFTERLSLCN------ARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLT-EEEV 267 (433)
T ss_dssp EEEEECCSCTTSEEEEEECGGGTTCCEEEEEE------CSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEE-EEEE
T ss_pred EEEEcCCCCcccceEEEEECCCCeeccccccc------cCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEE-EEEe
Confidence 44444321 1 1333333222110 11111 11455789999 66666555 5678888887642210 1110
Q ss_pred cccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcC--Ccee--eEEeecc---------------ccCeEEEEE
Q 014125 213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED--NMEL--LYVLHGQ---------------EGGVTHVQF 273 (430)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~--~~~~--~~~~~~~---------------~~~i~~~~~ 273 (430)
. .+.......++|+|++..++++-...+.|+.++.. ++.. ...+.+. -.....+++
T Consensus 268 ~-----~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav 342 (433)
T 4hw6_A 268 M-----MDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIF 342 (433)
T ss_dssp E-----CSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEE
T ss_pred c-----cCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEE
Confidence 0 01112234799999655477777778899998865 2221 1111111 123567898
Q ss_pred ---------ccCCCEEEEEecCCCeEEEEeCCCCceEEEEeeccc--------------CCccceEEEEEc-CCCCEEEE
Q 014125 274 ---------SRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSS--------------EHTNQRILFDIE-PSGRHLGT 329 (430)
Q Consensus 274 ---------~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~--------------~~~~~v~~~~~~-~~~~~l~~ 329 (430)
.++|. |+++....+.|+.++.. + .......... ..-.....++++ ++|.++++
T Consensus 343 ~~n~~y~~dd~~g~-lyvaD~~n~~I~~~~~~-G-~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVa 419 (433)
T 4hw6_A 343 VKNEAYAGEEDEYD-FYFCDRDSHTVRVLTPE-G-RVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIG 419 (433)
T ss_dssp EECGGGTTSSCCEE-EEEEETTTTEEEEECTT-S-EEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEE
T ss_pred EccccccccCCCCc-EEEEECCCCEEEEECCC-C-CEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEE
Confidence 66665 44444377899999853 3 2222211100 012346789999 66666666
Q ss_pred EccCCcEEEEEcC
Q 014125 330 GGQDGLVHIYDLQ 342 (430)
Q Consensus 330 ~~~dg~i~vwd~~ 342 (430)
-..+++|+.++++
T Consensus 420 D~~n~rIr~i~~e 432 (433)
T 4hw6_A 420 DCDNHRVRKIAPE 432 (433)
T ss_dssp EGGGTEEEEEEEC
T ss_pred eCCCCEEEEEecC
Confidence 6667788888764
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=98.31 E-value=2.2e-05 Score=75.45 Aligned_cols=220 Identities=8% Similarity=-0.013 Sum_probs=123.5
Q ss_pred CCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE--cCCeEEEEEcCCCCCcccccccccCCCCCCCcc
Q 014125 147 DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG--YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGI 224 (430)
Q Consensus 147 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 224 (430)
.+.|+..++........+.... .+..++|++.+..|+.+ ..+.|+.+++......... ..+ .......
T Consensus 385 ~~~I~~id~~~~~~~~~~~~~~------~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~-~~~---i~~~~~~ 454 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPNLR------NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY-DTV---ISRDIQA 454 (699)
T ss_dssp TTC-CEECTTSCCEECCSCCCT------TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCC-CCB---CCSCC--
T ss_pred ccceEEEeCCCCcceeeeccCc------ceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcce-EEE---EeCCCCC
Confidence 3568888887765543332221 55688999877777644 5688999998641100000 001 0111123
Q ss_pred eEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCC-CeEEEEeCCCCceEEE
Q 014125 225 MSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKD-PYILCWDLRKAVQVVY 303 (430)
Q Consensus 225 v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d-~~i~i~d~~~~~~~~~ 303 (430)
...+++.+.+++++++-...+.|.++++........+.........|+++|.+.+|+.+.... +.|..+++.......
T Consensus 455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~- 533 (699)
T 1n7d_A 455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS- 533 (699)
T ss_dssp CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCE-
T ss_pred cceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeE-
Confidence 456788865677777767788999999876544433332234567899999777676655223 688888876543221
Q ss_pred EeecccCCccceEEEEEcCCCCEE-EEEccCCcEEEEEcCCCCeecccc--cccCCeeEEEEcCCCcEEEEeeCCceeee
Q 014125 304 KLYRSSEHTNQRILFDIEPSGRHL-GTGGQDGLVHIYDLQTGKWISGFQ--AAADTVNGFSFHPFLPMAASSSGHRRFPV 380 (430)
Q Consensus 304 ~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~d~~~~v 380 (430)
+. .........++|+|++..| ++-+..+.|.++++........+. .......+|++..+ .++++....+.|..
T Consensus 534 -l~--~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~ 609 (699)
T 1n7d_A 534 -LV--TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFS 609 (699)
T ss_dssp -ES--CSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEE
T ss_pred -EE--eCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEE
Confidence 11 1123345679999876544 455566789999987433222221 11123345555443 44444444444544
Q ss_pred c
Q 014125 381 D 381 (430)
Q Consensus 381 w 381 (430)
.
T Consensus 610 ~ 610 (699)
T 1n7d_A 610 A 610 (699)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.28 E-value=2.3e-05 Score=76.34 Aligned_cols=147 Identities=15% Similarity=0.075 Sum_probs=88.8
Q ss_pred ceEEEEEc-CCCCceEEEecCCC----eEEEEEcCCc-eeeEEeeccccCeEEEEEccCCCEEEEEecCC-----CeEEE
Q 014125 224 IMSAIAFS-PTHTGMLAIGSYSQ----TSAIYREDNM-ELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKD-----PYILC 292 (430)
Q Consensus 224 ~v~~~~~~-~~~~~~l~~~~~dg----~v~~~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d-----~~i~i 292 (430)
.+....|+ |++..++++...+| +|+++|+.++ +.+... -......++|+|||+.|+... .+ ..|+.
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~--~~~~~~~~~WspDg~~l~y~~-~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADK--VSGTNGEIVWGPDHTSLFYVT-KDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCC--EEEECSCCEECSSTTEEEEEE-ECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcc--ccCceeeEEEecCCCEEEEEE-ECCCCCCCEEEE
Confidence 57889999 96554444444333 5999999988 632110 111245789999999888776 44 36888
Q ss_pred EeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEcc---CCcEEEEEcCCCC--e--ecccccccCCeeEEEEcCC
Q 014125 293 WDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQ---DGLVHIYDLQTGK--W--ISGFQAAADTVNGFSFHPF 365 (430)
Q Consensus 293 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~vwd~~~~~--~--~~~~~~~~~~v~~~~~~~~ 365 (430)
+++.++......+... ........+.|+|||++|+..+. ...|+++|+.++. . ........+...++.|+..
T Consensus 252 ~~lgt~~~~~~lv~~~-~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g 330 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEE-HNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGT 330 (751)
T ss_dssp EETTSCGGGCEEEEEC-CCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETT
T ss_pred EECCCCchhcEEEEec-CCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeC
Confidence 8887753211112111 22234567899999999876653 3458999998752 3 2222333445556665544
Q ss_pred CcEEEEeeC
Q 014125 366 LPMAASSSG 374 (430)
Q Consensus 366 ~~~l~s~~~ 374 (430)
+.+++.+..
T Consensus 331 ~~l~~~t~~ 339 (751)
T 2xe4_A 331 SHLVILTNE 339 (751)
T ss_dssp TEEEEEECT
T ss_pred CEEEEEeCC
Confidence 444444443
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.25 E-value=8.4e-05 Score=71.23 Aligned_cols=244 Identities=11% Similarity=0.062 Sum_probs=126.3
Q ss_pred CCceeEEEECcCCceEEEecC-CCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCC
Q 014125 60 NNFLKGIKWSPDGSSFLTSSE-DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS 138 (430)
Q Consensus 60 ~~~v~~~~~sp~~~~l~s~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 138 (430)
.....++++.++|+.++.|+. +..+.+||..+....... .......-.+++. .+++
T Consensus 242 ~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~----------------~~~~~R~~~s~~~-------~~dg 298 (656)
T 1k3i_A 242 DMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGP----------------DMQVARGYQSSAT-------MSDG 298 (656)
T ss_dssp CCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECC----------------CCSSCCSSCEEEE-------CTTS
T ss_pred CCccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECC----------------CCCccccccceEE-------ecCC
Confidence 333445778889999999985 457999998754321100 0000001111222 3578
Q ss_pred ceEEEEe-CC-----CcEEEEeccCCceeeeeecc-cccccccceEEEEECCCCcEEE-EEc---------CCeEEEEEc
Q 014125 139 CVFASTT-RD-----HPIHLWDATTGLLRCTYRAY-DAVDEITAAFSVAFNPTGTKIF-AGY---------NKSVRVFDV 201 (430)
Q Consensus 139 ~~l~~~~-~d-----g~i~vwd~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~-~~~---------d~~i~v~d~ 201 (430)
++++.|+ .+ ..+.+||..+++....-... ........ ...+..++..++ .+. ...+..||.
T Consensus 299 ~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~--~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~ 376 (656)
T 1k3i_A 299 RVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADK--QGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYT 376 (656)
T ss_dssp CEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCT--TGGGTTTCSCCEEECGGGCEEECCSSSEEEEEEC
T ss_pred eEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccc--cceeecCCceEEEECCCCcEEEecCccceeeeec
Confidence 8888888 34 56999999887644321000 00000000 011122333333 333 346778888
Q ss_pred CCCCCcccccccccCC--CCCCCcceEEEEEcCCCCceEEEecCCC-----------eEEEEEcCCceeeEEe--ecccc
Q 014125 202 HRPGRDFEKYSTLKGN--KEGQAGIMSAIAFSPTHTGMLAIGSYSQ-----------TSAIYREDNMELLYVL--HGQEG 266 (430)
Q Consensus 202 ~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----------~v~~~d~~~~~~~~~~--~~~~~ 266 (430)
...... ......... .......-.++.|...++.++++|+.++ .|.+||..+..-.... .....
T Consensus 377 ~~~~w~-~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~ 455 (656)
T 1k3i_A 377 SGSGDV-KSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFA 455 (656)
T ss_dssp STTCEE-EEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSC
T ss_pred CCccee-ecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCC
Confidence 653211 000000000 0001112344555444677888887543 6888888776544332 11222
Q ss_pred C-eEEEEEccCCCEEEEEecCC-----------CeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEcc
Q 014125 267 G-VTHVQFSRDGNYLYTGGRKD-----------PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQ 332 (430)
Q Consensus 267 ~-i~~~~~~~~~~~l~~~~~~d-----------~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 332 (430)
. -.+++..|+++.++.++ .+ ..+.+||..+..-. .+..............+.|+|+.++.|+.
T Consensus 456 R~~~~~~~l~~g~i~v~GG-~~~~~~~~~~~~~~~v~~ydp~t~~W~--~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 456 RTFHTSVVLPDGSTFITGG-QRRGIPFEDSTPVFTPEIYVPEQDTFY--KQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CBSCEEEECTTSCEEEECC-BSBCCTTCCCSBCCCCEEEEGGGTEEE--ECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred cccCCeEECCCCCEEEECC-cccCcCcCCCCcccceEEEcCCCCcee--ecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 2 23456678999888887 43 46899998775321 22221222233344566799999999985
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=0.0018 Score=61.18 Aligned_cols=204 Identities=11% Similarity=0.015 Sum_probs=118.1
Q ss_pred CeeeeeeeccccCccCCCCc-eEEEEeCCCcEEEEeccCCce-eeeeecccccccccceEEEEECCCCcEEE-EE-cCCe
Q 014125 120 ESVYDFCWFPHMSASDPTSC-VFASTTRDHPIHLWDATTGLL-RCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKS 195 (430)
Q Consensus 120 ~~v~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~ 195 (430)
.....++| ++.+. ++++-...+.|..+++..... ...+... ...+..+++.+.+..|+ +. ..+.
T Consensus 40 ~~~~~ld~-------~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~-----~~~P~GlAvD~~~~~ly~~d~~~~~ 107 (619)
T 3s94_A 40 EDAAAVDF-------VFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSG-----LLSPDGLACDWLGEKLYWTDSETNR 107 (619)
T ss_dssp SCEEEEEE-------ETTTTEEEEEETTTTEEEEEEC-----CEEEECSS-----CSCEEEEEEETTTTEEEEEETTTTE
T ss_pred CceEEEEE-------EeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCC-----CCCcCeEEEEecCCEEEEEeCCCCE
Confidence 45667777 43344 444445567788888865432 1122211 12567899998776666 44 5789
Q ss_pred EEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEec-CCCeEEEEEcCCceeeEEeeccccCeEEEEEc
Q 014125 196 VRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS-YSQTSAIYREDNMELLYVLHGQEGGVTHVQFS 274 (430)
Q Consensus 196 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~ 274 (430)
|.+.+++..... .+. .........++++|.++.++++-. ..+.|...++............-.....|+++
T Consensus 108 I~v~~~dG~~~~-----~l~---~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald 179 (619)
T 3s94_A 108 IEVSNLDGSLRK-----VLF---WQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLD 179 (619)
T ss_dssp EEEEETTSCSCE-----EEE---CSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEE
T ss_pred EEEEECCCCCEE-----EEE---eCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEE
Confidence 999998753211 111 112234678999995565555542 24678777776443333332233467899999
Q ss_pred cCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeec
Q 014125 275 RDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWIS 348 (430)
Q Consensus 275 ~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 348 (430)
+++..|+.+....+.|..+|+....... ... ........+++..+ ...++-...+.|...|..+++...
T Consensus 180 ~~~~~LY~aD~~~~~I~~~~~dG~~~~~-~~~---~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~ 248 (619)
T 3s94_A 180 YEEQKLYWADAKLNFIHKSNLDGTNRQA-VVK---GSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLR 248 (619)
T ss_dssp TTTTEEEEEETTTCCEEEESSSCCEEC-------------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCE
T ss_pred ccCCEEEEEeCCCCeEEEecCCCCccEE-EEe---CCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcccE
Confidence 9888888887677899999997653322 111 11222345666654 444444566789999988776443
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=0.0061 Score=57.70 Aligned_cols=218 Identities=10% Similarity=0.023 Sum_probs=136.5
Q ss_pred CCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCCcccccccccCCCCCCCc
Q 014125 146 RDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAG 223 (430)
Q Consensus 146 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 223 (430)
....|+..++.+......+.... ...+..++|++.+..|+ +. .++.|..++++.... ... . .....
T Consensus 13 ~~~~I~~i~l~~~~~~~~~~~~~----~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~--~~v--~----~~g~~ 80 (628)
T 4a0p_A 13 RRADIRRISLETNNNNVAIPLTG----VKEASALDFDVTDNRIYWTDISLKTISRAFMNGSAL--EHV--V----EFGLD 80 (628)
T ss_dssp ETTEEEEEESSCTTCEEECCCCS----CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EEE--E----CSSCS
T ss_pred eCCcEEEEECCCCCcceEEEcCC----CCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCc--EEE--E----eCCCC
Confidence 45679999998765433332211 12677999999877776 54 678899888864321 111 1 11113
Q ss_pred ceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEec-CCCeEEEEeCCCCceEE
Q 014125 224 IMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGR-KDPYILCWDLRKAVQVV 302 (430)
Q Consensus 224 ~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-~d~~i~i~d~~~~~~~~ 302 (430)
....+++.+.+++++++-...+.|.+.++........+...-.....|+++|....|+.+.. ..+.|...++.......
T Consensus 81 ~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~ 160 (628)
T 4a0p_A 81 YPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTT 160 (628)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE
T ss_pred CcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEE
Confidence 45678888767778888788899999998754433233233345789999997667777652 25688888887654322
Q ss_pred EEeecccCCccceEEEEEcCCCCEEEEE-ccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeec
Q 014125 303 YKLYRSSEHTNQRILFDIEPSGRHLGTG-GQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVD 381 (430)
Q Consensus 303 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw 381 (430)
+. ........+++++++..|..+ ...+.|..+|++.... ..+........++++.. +.+.++-...+.|..-
T Consensus 161 --l~---~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~ 233 (628)
T 4a0p_A 161 --LV---PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERA 233 (628)
T ss_dssp --EE---CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEE
T ss_pred --EE---CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEE
Confidence 11 134567889999976666555 4567899999875443 33333334456777765 4444444445555554
Q ss_pred C
Q 014125 382 D 382 (430)
Q Consensus 382 ~ 382 (430)
+
T Consensus 234 d 234 (628)
T 4a0p_A 234 N 234 (628)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=98.13 E-value=0.0018 Score=54.88 Aligned_cols=198 Identities=11% Similarity=0.103 Sum_probs=118.6
Q ss_pred EEEEECCCCcEEE-EE-cCCeEEEEEcCCCCCcccccccccCCC--CCCCcceEEEEE---cCCCCceEEEec-------
Q 014125 177 FSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYSTLKGNK--EGQAGIMSAIAF---SPTHTGMLAIGS------- 242 (430)
Q Consensus 177 ~~~~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~---~~~~~~~l~~~~------- 242 (430)
-++.|++....+. ++ ..+.|..|+...+.. ... .+.... ......+..+.| .| .+.++++..
T Consensus 16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~--~~~-~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~af~~ 91 (334)
T 2p9w_A 16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSH--FNV-VIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKSFNF 91 (334)
T ss_dssp SCEEEETTTTEEEEEETTTTEEEEECTTTCCE--EEE-CCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTTTCT
T ss_pred cCccCcCCCCEEEEEeccCCEEEEEcCCCCeE--EEE-ecCCccccCCCcceeeEEEEeccCC-CCcEEEEEcccccccc
Confidence 3789987555554 55 789999999864211 111 111100 111224689999 68 466666543
Q ss_pred ------CCCeEEEEEcC---CceeeEEee--ccc-----------cCeEEEEEccCCCEEEEEecCC-CeEEEEeCCCCc
Q 014125 243 ------YSQTSAIYRED---NMELLYVLH--GQE-----------GGVTHVQFSRDGNYLYTGGRKD-PYILCWDLRKAV 299 (430)
Q Consensus 243 ------~dg~v~~~d~~---~~~~~~~~~--~~~-----------~~i~~~~~~~~~~~l~~~~~~d-~~i~i~d~~~~~ 299 (430)
.+..|..||+. +++.+.... ... .....++..++|+..++.+ .. +.|...+.....
T Consensus 92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s-~~~~~I~rV~pdG~~ 170 (334)
T 2p9w_A 92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFA-LGMPAIARVSADGKT 170 (334)
T ss_dssp TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEE-ESSCEEEEECTTSCC
T ss_pred cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCC-CCCCeEEEEeCCCCE
Confidence 26779999999 777665544 111 2478999999999887777 66 777777766442
Q ss_pred eEEEEeecc--cCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCe--ecccc--cc---cCCeeEE-EEcCCCcE-
Q 014125 300 QVVYKLYRS--SEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKW--ISGFQ--AA---ADTVNGF-SFHPFLPM- 368 (430)
Q Consensus 300 ~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~--~~---~~~v~~~-~~~~~~~~- 368 (430)
... ..... .......+.++++|+|..|++....|.+..+|+.+... +. .. +. -.....| .--.+|+.
T Consensus 171 ~~~-~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~-~~~~G~~~~~~~~dgilp~~~~G~vl 248 (334)
T 2p9w_A 171 VST-FAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEP-VKINGDFGTLSGTEKIVTVPVGNESV 248 (334)
T ss_dssp EEE-EEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEE-CEESSCCCCCTTEEEEEEEEETTEEE
T ss_pred Eee-eeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeec-ccccCCcccccCcccccccccCCEEE
Confidence 221 11111 12223466899999999888887799999999884322 11 11 21 1123443 33346776
Q ss_pred EEEeeCCceeeec
Q 014125 369 AASSSGHRRFPVD 381 (430)
Q Consensus 369 l~s~~~d~~~~vw 381 (430)
|++....+.+.+-
T Consensus 249 lV~~~~~~~~~l~ 261 (334)
T 2p9w_A 249 LVGARAPYAISFR 261 (334)
T ss_dssp EEEEETTEEEEEE
T ss_pred EEEcCCCCEEEEE
Confidence 5555556655554
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=0.00068 Score=58.79 Aligned_cols=187 Identities=12% Similarity=0.111 Sum_probs=107.8
Q ss_pred CCCcEEEEeccCCc-eeeeeeccc--ccccccceEEEEECC--CCc--EEEEE---cCCeEEEEEcCCCCCccccccccc
Q 014125 146 RDHPIHLWDATTGL-LRCTYRAYD--AVDEITAAFSVAFNP--TGT--KIFAG---YNKSVRVFDVHRPGRDFEKYSTLK 215 (430)
Q Consensus 146 ~dg~i~vwd~~~~~-~~~~~~~~~--~~~~~~~v~~~~~~~--~~~--~l~~~---~d~~i~v~d~~~~~~~~~~~~~~~ 215 (430)
.+|.|.++|+.+.. ....+.... ..........+.+.+ ++. ++++. .+..|.+|+++..+..........
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 68999999987421 122222211 011122556677655 343 33443 257888998876544433333332
Q ss_pred CCCCCCCcceEEEEEcCCCCceEEEec-----------------CCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCC
Q 014125 216 GNKEGQAGIMSAIAFSPTHTGMLAIGS-----------------YSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGN 278 (430)
Q Consensus 216 ~~~~~~~~~v~~~~~~~~~~~~l~~~~-----------------~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~ 278 (430)
. ..-...+.+.+.+ .+.++++.. ..|.|..+|.. +.. .+...-...+.++|+||++
T Consensus 161 g---~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~~-~~~~~l~~pNGia~spDg~ 233 (355)
T 3sre_A 161 H---KLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DVR-VVAEGFDFANGINISPDGK 233 (355)
T ss_dssp C---TTCSSEEEEEEEE-TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CCE-EEEEEESSEEEEEECTTSS
T ss_pred c---CCCCCCceEEEeC-CCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--eEE-EeecCCcccCcceECCCCC
Confidence 2 1234578899998 555666543 13556666653 322 2222334578999999999
Q ss_pred EEEEEecCCCeEEEEeCCCCceEE-EEeecccCCccceEEEEEcC-CCCEEEEEccC-CcEEEEEcC
Q 014125 279 YLYTGGRKDPYILCWDLRKAVQVV-YKLYRSSEHTNQRILFDIEP-SGRHLGTGGQD-GLVHIYDLQ 342 (430)
Q Consensus 279 ~l~~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d-g~i~vwd~~ 342 (430)
.|+++....+.|..|++....... .... ......-.+++++ +|++.+++..+ +.|..|+..
T Consensus 234 ~lYvadt~~~~I~~~~~~~~g~l~~~~~~---~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 234 YVYIAELLAHKIHVYEKHANWTLTPLRVL---SFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAE 297 (355)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEEEEEE---ECSSEEEEEEECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred EEEEEeCCCCeEEEEEECCCCcEecCEEE---eCCCCCceEEEeCCCCcEEEEecCCceEEEEECCC
Confidence 999888678999999987432221 1122 1235567789999 58887766544 344444443
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.11 E-value=0.005 Score=55.83 Aligned_cols=261 Identities=10% Similarity=0.062 Sum_probs=137.4
Q ss_pred eeEEEECcC-C-ceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCce
Q 014125 63 LKGIKWSPD-G-SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV 140 (430)
Q Consensus 63 v~~~~~sp~-~-~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (430)
...|+|+|. . +++++-...+.|++.|+.++.+....... ...-.....++|......+++++..
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~--------------~~~~~~p~~ia~~~~~~~~d~~G~~ 206 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNIN--------------TIPTNRIRSIAFNKKIEGYADEAEY 206 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCT--------------TSSCSBEEEEEECCCBTTTBCTTCE
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccC--------------ccccCCCcEEEEeecccccCCCCCE
Confidence 568999983 4 44444444467888888765332111000 0011245666663333344668886
Q ss_pred EEEEeCCC-c------EEEEeccC-Ccee-----eeeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcC---
Q 014125 141 FASTTRDH-P------IHLWDATT-GLLR-----CTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVH--- 202 (430)
Q Consensus 141 l~~~~~dg-~------i~vwd~~~-~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~v~d~~--- 202 (430)
|+++...+ . |.+++... +... ..+... .....++++|++..|+ +. .++.|..+|+.
T Consensus 207 lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~------~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~ 280 (496)
T 3kya_A 207 MIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY------KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYF 280 (496)
T ss_dssp EEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE------SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHH
T ss_pred EEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccC------CCceEEEEcCCCCeEEEEECCCCEEEEEeccccc
Confidence 66665543 2 55665443 2221 122211 1445789999655544 55 67889999987
Q ss_pred ----CCCC--cc-cc----cccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcC--Ccee--eEEeecc---
Q 014125 203 ----RPGR--DF-EK----YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED--NMEL--LYVLHGQ--- 264 (430)
Q Consensus 203 ----~~~~--~~-~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~--~~~~--~~~~~~~--- 264 (430)
.+.. +. .. ...+. ..+.......++|+|++..++++-+....|+.++.. .+.. ...+-+.
T Consensus 281 ~~~~tg~~~tp~~~~~~g~~~~l~--~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~ 358 (496)
T 3kya_A 281 KTIKNGGSWDPIVKNNPNTFKQLF--TIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQ 358 (496)
T ss_dssp HHHHTTCCCCCBGGGCTTTEEEEE--ECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTB
T ss_pred ccccCceeecccccccccccceeE--ecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCC
Confidence 3221 00 00 00110 012234467999999554456666778889996653 3321 1122111
Q ss_pred c------------cCeE-EEEEc-------cCCCEEEEEecCCCeEEEEeCCCCceEEEEeeccc----------C----
Q 014125 265 E------------GGVT-HVQFS-------RDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSS----------E---- 310 (430)
Q Consensus 265 ~------------~~i~-~~~~~-------~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~----------~---- 310 (430)
. .... .++.. +++. |+++....+.|+.++. ++ ......-... +
T Consensus 359 ~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~-lyVaD~~N~rIr~i~~-~G-~v~TiaG~g~~~~~~~~~~~G~~dG 435 (496)
T 3kya_A 359 SGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYD-FYFVDRLNFCVRKVTP-EG-IVSTYAGRGASTSLADGNQWGTDDG 435 (496)
T ss_dssp CCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEE-EEEEEGGGTEEEEECT-TC-BEEEEEESCTTHHHHHSCSCCCCCE
T ss_pred CcccCCcccccccCCCeEEEEEccccccccCCCe-EEEEECCCCEEEEEeC-CC-CEEEEecccccccccCccccccCCC
Confidence 0 1233 34443 3444 5555547889999984 33 2222211100 1
Q ss_pred ------CccceEEEEEcCC-CCEEEEEccCCcEEEEEcCCCCeec
Q 014125 311 ------HTNQRILFDIEPS-GRHLGTGGQDGLVHIYDLQTGKWIS 348 (430)
Q Consensus 311 ------~~~~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~ 348 (430)
.-.....++++++ |.++++=..+.+|+.+++.....+.
T Consensus 436 ~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~~ 480 (496)
T 3kya_A 436 DLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENVA 480 (496)
T ss_dssp ETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC---
T ss_pred CchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCcccc
Confidence 1234678999986 7666666677889999887655443
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=98.03 E-value=0.0003 Score=59.58 Aligned_cols=159 Identities=11% Similarity=0.116 Sum_probs=103.2
Q ss_pred eEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEE-eec----cc--cCeEEEEE---ccCCCEEEEEec---------
Q 014125 225 MSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYV-LHG----QE--GGVTHVQF---SRDGNYLYTGGR--------- 285 (430)
Q Consensus 225 v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~-~~~----~~--~~i~~~~~---~~~~~~l~~~~~--------- 285 (430)
..++.|++..+.++++.-..++|..||...+..... +.. .. ..+..|.| .|+++++++...
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~ 94 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ 94 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence 456789885565666666899999999975543322 221 01 13578999 688777665330
Q ss_pred ---CCCeEEEEeCC---CCceEEEEeeccc--C-------CccceEEEEEcCCCCEEEEEccC-CcEEEEEcCCCCeecc
Q 014125 286 ---KDPYILCWDLR---KAVQVVYKLYRSS--E-------HTNQRILFDIEPSGRHLGTGGQD-GLVHIYDLQTGKWISG 349 (430)
Q Consensus 286 ---~d~~i~i~d~~---~~~~~~~~~~~~~--~-------~~~~v~~~~~~~~~~~l~~~~~d-g~i~vwd~~~~~~~~~ 349 (430)
.+..|..||+. +++.....-.... + .......++..++|+..++++.. +.|...+.+.. .+..
T Consensus 95 ~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~~~~ 173 (334)
T 2p9w_A 95 SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-TVST 173 (334)
T ss_dssp CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-CEEE
T ss_pred ccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-EEee
Confidence 26789999998 5544432221100 0 12347889999999999988888 87777776633 2222
Q ss_pred cc------cccCCeeEEEEcCCCcEEEEeeCCceeeecCCC
Q 014125 350 FQ------AAADTVNGFSFHPFLPMAASSSGHRRFPVDDFE 384 (430)
Q Consensus 350 ~~------~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~ 384 (430)
+. ...-..+.|+++|++.+|++....+.+...|..
T Consensus 174 ~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 174 FAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp EEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred eeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 21 111246799999999988888767777766544
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=97.95 E-value=0.0021 Score=64.90 Aligned_cols=212 Identities=11% Similarity=0.142 Sum_probs=127.9
Q ss_pred CCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccc
Q 014125 135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTL 214 (430)
Q Consensus 135 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~ 214 (430)
+|..+.+|.-. ..++.|+|+++...+..+.... +|.-..|-.+. .|+--.+..|.-|++.....+.+.+...
T Consensus 74 nP~~~iiALra-g~~lQiFnl~~k~klks~~~~e------~VvfWkWis~~-~l~lVT~~aVyHW~~~~~s~P~k~fdR~ 145 (1630)
T 1xi4_A 74 NPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD------DVTFWKWISLN-TVALVTDNAVYHWSMEGESQPVKMFDRH 145 (1630)
T ss_pred CCCcceEEEec-CCeEEEeehHHhhhhcccccCC------CceEEEecCCC-eeEEEcCCeEEEeccCCCCccHHHHhcc
Confidence 45555666554 6789999999988777766544 67777886554 4443456789999997543333322211
Q ss_pred cCCCCCCCcceEEEEEcCCCCceEEEec------CCCeEEEEEcCCceeeEEeeccccCeEEEEEc--cCCCEEEEEec-
Q 014125 215 KGNKEGQAGIMSAIAFSPTHTGMLAIGS------YSQTSAIYREDNMELLYVLHGQEGGVTHVQFS--RDGNYLYTGGR- 285 (430)
Q Consensus 215 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~------~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~- 285 (430)
. .+. ...|..-..+++...++++|- -.|.+.+|+... +..+.+.+|.+....+... +....|++-+.
T Consensus 146 ~-~L~--~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er-~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~ 221 (1630)
T 1xi4_A 146 S-SLA--GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVR 221 (1630)
T ss_pred h-hcc--cCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccc-ccchhhhHhHhhhheeccCCCCCCceEEEEEEe
Confidence 1 111 345666777775555555553 357889998763 4445667776655444442 22223433220
Q ss_pred --CCCeEEEEeCCCC---ce-----EEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccC
Q 014125 286 --KDPYILCWDLRKA---VQ-----VVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAAD 355 (430)
Q Consensus 286 --~d~~i~i~d~~~~---~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 355 (430)
..+.++|.++... .. .....+.......-..++..++.-..+..-+.-|.|+++|+.++.++..-+-...
T Consensus 222 ~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~ 301 (1630)
T 1xi4_A 222 GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGE 301 (1630)
T ss_pred cCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCC
Confidence 2378999988543 11 1111111122334455677787777788888999999999999988776554444
Q ss_pred Cee
Q 014125 356 TVN 358 (430)
Q Consensus 356 ~v~ 358 (430)
+|-
T Consensus 302 ~iF 304 (1630)
T 1xi4_A 302 TIF 304 (1630)
T ss_pred ceE
Confidence 443
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.95 E-value=0.0081 Score=52.46 Aligned_cols=234 Identities=9% Similarity=0.002 Sum_probs=117.5
Q ss_pred eeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCC---CcEEE-EEc-C--
Q 014125 121 SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT---GTKIF-AGY-N-- 193 (430)
Q Consensus 121 ~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~-~~~-d-- 193 (430)
.-+.++| .|+|++++ +..+|.|.+++ +++...................++++|+ +..|+ +.. .
T Consensus 32 ~P~~ia~-------~pdG~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~ 101 (352)
T 2ism_A 32 VPWALAF-------LPDGGMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEG 101 (352)
T ss_dssp CEEEEEE-------CTTSCEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTT
T ss_pred CceEEEE-------cCCCeEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCC
Confidence 3456777 77888554 45669999998 4432211111111111236789999998 44554 332 2
Q ss_pred ---CeEEEEEcCCCCC-cccc-cccccC-CCCCCCcceEEEEEcCCCCceEEEecC-------------CCeEEEEEcCC
Q 014125 194 ---KSVRVFDVHRPGR-DFEK-YSTLKG-NKEGQAGIMSAIAFSPTHTGMLAIGSY-------------SQTSAIYREDN 254 (430)
Q Consensus 194 ---~~i~v~d~~~~~~-~~~~-~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~-------------dg~v~~~d~~~ 254 (430)
+.|..++...... ..+. +..+.. ....| ....++|.|++ .++++.+. .|.|.-++...
T Consensus 102 ~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h--~~~~l~~~pdG-~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG 178 (352)
T 2ism_A 102 GLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLH--SGGRIAFGPDG-MLYVTTGEVYERELAQDLASLGGKILRLTPEG 178 (352)
T ss_dssp SSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCC--CCCCEEECTTS-CEEEECCCTTCGGGGGCTTCSSSEEEEECTTS
T ss_pred CCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCc--CCceEEECCCC-CEEEEECCCCCCccccCCCCCceEEEEEcCCC
Confidence 6787887753210 0001 111110 01122 23589999955 55555321 25666666543
Q ss_pred c-------------eeeEEeeccccCeEEEEEcc-CCCEEEEEecCCCe--------EEEEeCCCCce------------
Q 014125 255 M-------------ELLYVLHGQEGGVTHVQFSR-DGNYLYTGGRKDPY--------ILCWDLRKAVQ------------ 300 (430)
Q Consensus 255 ~-------------~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~d~~--------i~i~d~~~~~~------------ 300 (430)
. .......++ .....++|+| ++..+++-. ..+. |.+.. .+..
T Consensus 179 ~~p~~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~-g~~~~~~~~~dei~~i~--~G~nyGwp~~~g~~~~ 254 (352)
T 2ism_A 179 EPAPGNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEH-GPSGEQGYGHDEVNLIV--PGGNYGWPRVVGRGND 254 (352)
T ss_dssp SBCTTCTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEE-CC------CCCEEEEEC--TTCBCCTTTCCSCCCC
T ss_pred CCCCCCcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEc-CCCCCCCCCCeEEEEec--cCCcCCCCcccCCCCC
Confidence 1 111111123 2357789999 566444433 2332 33322 1110
Q ss_pred --EEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCe------ecccccccCCeeEEEEcCCCcEEEEe
Q 014125 301 --VVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKW------ISGFQAAADTVNGFSFHPFLPMAASS 372 (430)
Q Consensus 301 --~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~s~ 372 (430)
........ .+......++| .+|.++++.-..+.|...++..... ...+......+..+++.|+|.+.++.
T Consensus 255 ~~~~~p~~~~-~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~ 332 (352)
T 2ism_A 255 PRYRDPLYFW-PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTT 332 (352)
T ss_dssp TTSCCCSEEC-TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEE
T ss_pred CCCcCCeEec-CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEE
Confidence 00000010 12234556777 4566666666667788887764431 11221223578999999999877766
Q ss_pred e
Q 014125 373 S 373 (430)
Q Consensus 373 ~ 373 (430)
.
T Consensus 333 ~ 333 (352)
T 2ism_A 333 S 333 (352)
T ss_dssp C
T ss_pred e
Confidence 4
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=0.014 Score=55.08 Aligned_cols=185 Identities=11% Similarity=0.008 Sum_probs=112.3
Q ss_pred EEEEEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeecccc
Q 014125 187 KIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEG 266 (430)
Q Consensus 187 ~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~ 266 (430)
+|+.+..+.|+..++......... + .. ..-..+..++|++.++.++++-...+.|+.+++........+...-.
T Consensus 319 ~Ll~~~~~~i~~i~l~~~~~~~~~---~--~~-~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~ 392 (619)
T 3s94_A 319 LLLLARRTDLRRISLDTPDFTDIV---L--QL-EDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIA 392 (619)
T ss_dssp EEEEEESSCEEEEESSSTTCCCEE---C--CC-SCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCS
T ss_pred EEEEEcccceEEEecCCCccceeE---E--ec-cccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCC
Confidence 455555667777777653321100 0 00 11234778999986666666666788999999876444333333334
Q ss_pred CeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEcc--CCcEEEEEcCCC
Q 014125 267 GVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQ--DGLVHIYDLQTG 344 (430)
Q Consensus 267 ~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~ 344 (430)
....+++.+.+..|+.+....+.|.+.++....... +. ...-.....++++|...+|+.... .+.|...+++..
T Consensus 393 ~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~--l~--~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~ 468 (619)
T 3s94_A 393 HPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKI--LI--SEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGS 468 (619)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE--EE--CTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred CcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEE--EE--ECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCC
Confidence 677899988777777777578899999988654322 21 223456789999997545544432 356777777633
Q ss_pred CeecccccccCCeeEEEEcCCCcEEEEeeC-Cceeeec
Q 014125 345 KWISGFQAAADTVNGFSFHPFLPMAASSSG-HRRFPVD 381 (430)
Q Consensus 345 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-d~~~~vw 381 (430)
.........-...++|+++++...|..+.. .+.|...
T Consensus 469 ~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~ 506 (619)
T 3s94_A 469 DRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVM 506 (619)
T ss_dssp SCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred ccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEE
Confidence 222222223346789999987766665543 3444443
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=0.0098 Score=51.93 Aligned_cols=238 Identities=11% Similarity=0.006 Sum_probs=120.7
Q ss_pred eeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCc-eeeeeecccccccccceEEEEECCC---CcEEE-EEc---
Q 014125 121 SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGL-LRCTYRAYDAVDEITAAFSVAFNPT---GTKIF-AGY--- 192 (430)
Q Consensus 121 ~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~-~~~--- 192 (430)
..+.++| .|+|++ +++..+|.|++++ .+++ .+..+.. ..........++++|+ +..|. +..
T Consensus 30 ~P~~ia~-------~pdG~l-~V~e~~g~I~~~d-~~G~~~~~~~~v--~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~ 98 (354)
T 3a9g_A 30 VPWSIAP-------LGGGRY-LVTERPGRLVLIS-PSGKKLVASFDV--ANVGEAGLLGLALHPEFPKKSWVYLYASYFA 98 (354)
T ss_dssp CEEEEEE-------EETTEE-EEEETTTEEEEEC-SSCEEEEEECCC--CCSTTCSEEEEEECTTTTTSCEEEEEEEEEC
T ss_pred CCeEEEE-------cCCCeE-EEEeCCCEEEEEe-CCCceEeeccce--eecCCCceeeEEeCCCCCcCCEEEEEEeccC
Confidence 4566777 667874 4456669999997 3454 1111110 0111235789999998 44444 332
Q ss_pred -C----CeEEEEEcCCCCCccccccccc---CCCCCCCcceEEEEEcCCCCceEEEecC-------------CCeEEEEE
Q 014125 193 -N----KSVRVFDVHRPGRDFEKYSTLK---GNKEGQAGIMSAIAFSPTHTGMLAIGSY-------------SQTSAIYR 251 (430)
Q Consensus 193 -d----~~i~v~d~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~l~~~~~-------------dg~v~~~d 251 (430)
+ +.|..|+.............+. .....| ....++|.|++ .++++.+. .|.|.-++
T Consensus 99 ~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h--~~~~l~~~pDG-~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~ 175 (354)
T 3a9g_A 99 EGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIH--NGGRIRFGPDG-MLYITTGDAADPRLAQDLSSLAGKILRVD 175 (354)
T ss_dssp GGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSC--CCCCEEECTTS-CEEEECCCTTCGGGGTCTTCCSSEEEEEC
T ss_pred CCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCc--CCceEEECCCC-cEEEEECCCCCCccccCCCCCCeEEEEEc
Confidence 2 5677777654311111111110 011122 24678999954 55555322 25666666
Q ss_pred cCCc--------eeeEEeeccccCeEEEEEcc-CCCEEEEEecCCC--eEEEEeCCC--------Cce----EEEEeecc
Q 014125 252 EDNM--------ELLYVLHGQEGGVTHVQFSR-DGNYLYTGGRKDP--YILCWDLRK--------AVQ----VVYKLYRS 308 (430)
Q Consensus 252 ~~~~--------~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~d~--~i~i~d~~~--------~~~----~~~~~~~~ 308 (430)
.... .......++. ....++|+| ++..+++-...+. .|.+..... ... ........
T Consensus 176 ~dG~~p~~npf~~~~i~a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~ 254 (354)
T 3a9g_A 176 EEGRPPADNPFPNSPIWSYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDT 254 (354)
T ss_dssp TTSCCCTTSSSTTCCEEEECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC
T ss_pred CCCCCCCCCCCCCCcEEEEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeec
Confidence 5422 0111112332 346899999 5664444331221 233322110 000 00011111
Q ss_pred cCCccceEEEEEc-------CCCCEEEEEccCCcEEEEEcCCC-Cee--ccc-ccccCCeeEEEEcCCCcEEEEee
Q 014125 309 SEHTNQRILFDIE-------PSGRHLGTGGQDGLVHIYDLQTG-KWI--SGF-QAAADTVNGFSFHPFLPMAASSS 373 (430)
Q Consensus 309 ~~~~~~v~~~~~~-------~~~~~l~~~~~dg~i~vwd~~~~-~~~--~~~-~~~~~~v~~~~~~~~~~~l~s~~ 373 (430)
.........++|. .+|.++++.-..+.|...++... +.. ..+ ......+..+++.|+|.+.++..
T Consensus 255 ~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 255 GSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp TTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred CCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 0123456778883 46777777667778888888753 322 122 22235789999999998777654
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=97.89 E-value=0.008 Score=52.52 Aligned_cols=239 Identities=8% Similarity=-0.000 Sum_probs=119.3
Q ss_pred eeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeeccc--ccccccceEEEEECCC---CcEEE-EE-c-
Q 014125 121 SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYD--AVDEITAAFSVAFNPT---GTKIF-AG-Y- 192 (430)
Q Consensus 121 ~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~---~~~l~-~~-~- 192 (430)
..+.++| .|+|+.|+++...|.|++++.. +.....+.... ..........++++|+ +..|. +. .
T Consensus 19 ~P~~i~~-------~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~ 90 (353)
T 2g8s_A 19 HPWALAF-------LPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEV 90 (353)
T ss_dssp SEEEEEE-------CSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEE
T ss_pred CcEEEEE-------cCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCC
Confidence 3456666 7788834555678999999853 33221111110 0011225678999996 44444 32 2
Q ss_pred ------CCeEEEEEcCCCCCcccccccccCC-----CCCCCcceEEEEEcCCCCceEEEecC-------------CCeEE
Q 014125 193 ------NKSVRVFDVHRPGRDFEKYSTLKGN-----KEGQAGIMSAIAFSPTHTGMLAIGSY-------------SQTSA 248 (430)
Q Consensus 193 ------d~~i~v~d~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~l~~~~~-------------dg~v~ 248 (430)
...|..|++............+... ...| ....++|.|++ .++++.+. .|.|.
T Consensus 91 ~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h--~~~~l~~~pdG-~Lyv~~Gd~~~~~~~q~~~~~~g~I~ 167 (353)
T 2g8s_A 91 GDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNH--FGGRLVFDGKG-YLFIALGENNQRPTAQDLDKLQGKLV 167 (353)
T ss_dssp CSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSC--CCCCEEECSSS-EEEEEECCTTCGGGGGCTTSCTTEEE
T ss_pred CCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcc--cCccEEECCCC-cEEEEECCCCCCCccCCCCCCCeEEE
Confidence 2356666665432221111111101 1122 23569999955 45554322 25677
Q ss_pred EEEcCCce------------eeEEe-eccccCeEEEEEccCCCEEEEEe-cCCCeEEEEeCCCCceE-------------
Q 014125 249 IYREDNME------------LLYVL-HGQEGGVTHVQFSRDGNYLYTGG-RKDPYILCWDLRKAVQV------------- 301 (430)
Q Consensus 249 ~~d~~~~~------------~~~~~-~~~~~~i~~~~~~~~~~~l~~~~-~~d~~i~i~d~~~~~~~------------- 301 (430)
-++....- ....+ .++ .....++|+|....|+++. ..++.=.|.-+..+...
T Consensus 168 ri~~dG~~p~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~ 246 (353)
T 2g8s_A 168 RLTDQGEIPDDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSG 246 (353)
T ss_dssp EEETTSCCCTTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTS
T ss_pred EECCCCCCCCCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCC
Confidence 77765320 11111 123 2467899999433444443 12211122222111100
Q ss_pred --------------EEEeecccCCccceEEEEEcC-------CCCEEEEEccCCcEEEEEcCCCCeecc---cccccCCe
Q 014125 302 --------------VYKLYRSSEHTNQRILFDIEP-------SGRHLGTGGQDGLVHIYDLQTGKWISG---FQAAADTV 357 (430)
Q Consensus 302 --------------~~~~~~~~~~~~~v~~~~~~~-------~~~~l~~~~~dg~i~vwd~~~~~~~~~---~~~~~~~v 357 (430)
...... ..+...+..+.|.. +|.++++.-..+.|...++..++.+.. +......+
T Consensus 247 ~~~~~~~~~~~~~~~~P~~~-~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp 325 (353)
T 2g8s_A 247 FKIPEAKGEIVAGTEQPVFY-WKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRI 325 (353)
T ss_dssp SCCTTCCBSSCTTSCCCSEE-ESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCE
T ss_pred CccCcccCCCCCCccCCeEE-eCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCce
Confidence 000000 01223566677753 466777766778888888876543322 12223478
Q ss_pred eEEEEcCCCcEEEEe
Q 014125 358 NGFSFHPFLPMAASS 372 (430)
Q Consensus 358 ~~~~~~~~~~~l~s~ 372 (430)
..+++.|+|.+.++.
T Consensus 326 ~~v~~~pdG~lyv~t 340 (353)
T 2g8s_A 326 RDVRTGPDGYLYVLT 340 (353)
T ss_dssp EEEEECTTSCEEEEE
T ss_pred eEEEECCCCcEEEEE
Confidence 999999999877654
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.88 E-value=0.0034 Score=53.74 Aligned_cols=186 Identities=15% Similarity=0.204 Sum_probs=109.0
Q ss_pred cEEE-EEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCC---CCc---eEEE-ecC--CCeEEEEEcC-C
Q 014125 186 TKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPT---HTG---MLAI-GSY--SQTSAIYRED-N 254 (430)
Q Consensus 186 ~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~---~l~~-~~~--dg~v~~~d~~-~ 254 (430)
.+++ +...+-+.+||+.. .... .+ .. +.+..+..-|. ++. ++++ ... +++|.+|++. .
T Consensus 41 s~ii~t~k~~gL~Vydl~G--~~l~---~~----~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~ 109 (355)
T 3amr_A 41 SKLITTNKKSGLVVYSLDG--KMLH---SY----NT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGK 109 (355)
T ss_dssp CEEEEEETTTEEEEEETTS--CEEE---EE----CC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTT
T ss_pred cEEEEEcCCCCEEEEcCCC--cEEE---Ec----cC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCC
Confidence 4444 44778999999943 2111 11 11 34566665551 111 2233 333 5789999773 2
Q ss_pred ceeeEEeec------cc-cCeEEEEE--ccC-CC-EEEEEecCCCeEEEEeCCC---CceEEEEeecccCCccceEEEEE
Q 014125 255 MELLYVLHG------QE-GGVTHVQF--SRD-GN-YLYTGGRKDPYILCWDLRK---AVQVVYKLYRSSEHTNQRILFDI 320 (430)
Q Consensus 255 ~~~~~~~~~------~~-~~i~~~~~--~~~-~~-~l~~~~~~d~~i~i~d~~~---~~~~~~~~~~~~~~~~~v~~~~~ 320 (430)
...+..+.. .. ..+..+++ +|. ++ ++++.. .+|.+..|++.. +.... +..+.....+.+-.|..
T Consensus 110 ~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~-k~G~~~q~~l~~~~~g~~~~-~lVR~f~lgsq~Egcvv 187 (355)
T 3amr_A 110 NGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTG-KEGEFEQYELKADKNGYISG-KKVRAFKMNSQTEGMAA 187 (355)
T ss_dssp TCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEEC-SSSEEEEEEEEECTTSCEEE-EEEEEEECSSCEEEEEE
T ss_pred CCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEEC-CCCeEEEEEEEeCCCCcccc-eEEEEecCCCCcceEEE
Confidence 223444421 11 45677888 774 44 577777 889999999843 21111 11111223457888999
Q ss_pred cCCCCEEEEEccCCcEEEEEcC-----CCCeecccc-cc-cCCeeEEEE--cCCCc-EEEEee-CCceeeecCCC
Q 014125 321 EPSGRHLGTGGQDGLVHIYDLQ-----TGKWISGFQ-AA-ADTVNGFSF--HPFLP-MAASSS-GHRRFPVDDFE 384 (430)
Q Consensus 321 ~~~~~~l~~~~~dg~i~vwd~~-----~~~~~~~~~-~~-~~~v~~~~~--~~~~~-~l~s~~-~d~~~~vw~~~ 384 (430)
.+....|+.+-++.-|..++.+ +++.+..+. ++ ...+..|+. .++++ +|++++ .+..+.||+.+
T Consensus 188 Dd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 188 DDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp ETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred cCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 9988999999998777777755 344554442 22 236888888 45555 555555 57788888764
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=97.88 E-value=0.01 Score=51.26 Aligned_cols=231 Identities=9% Similarity=0.030 Sum_probs=120.2
Q ss_pred CeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEE
Q 014125 120 ESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVF 199 (430)
Q Consensus 120 ~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~ 199 (430)
..+.++.+ .+.+..++ ++..|.| +.....++.-....... ......+.++.+++ +..++++..+.|.
T Consensus 36 ~~~~~v~~-------~~~~~~~~-~G~~g~i-~~s~DgG~tW~~~~~~~-~~~~~~~~~i~~~~-~~~~~~g~~g~i~-- 102 (327)
T 2xbg_A 36 ATILDMSF-------IDRHHGWL-VGVNATL-METRDGGQTWEPRTLVL-DHSDYRFNSVSFQG-NEGWIVGEPPIML-- 102 (327)
T ss_dssp SCEEEEEE-------SSSSCEEE-EETTTEE-EEESSTTSSCEECCCCC-SCCCCEEEEEEEET-TEEEEEEETTEEE--
T ss_pred CcEEEEEE-------CCCCcEEE-EcCCCeE-EEeCCCCCCCeECCCCC-CCCCccEEEEEecC-CeEEEEECCCeEE--
Confidence 46778877 44455566 4556654 23333343222221110 01122677888876 5556677677443
Q ss_pred EcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEE-eeccccCeEEEEEccCCC
Q 014125 200 DVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYV-LHGQEGGVTHVQFSRDGN 278 (430)
Q Consensus 200 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~ 278 (430)
.....+..+...... ......+..+.+.+ .+.+++++. +|.|.. ....++.-.. .......+..+++.|++.
T Consensus 103 ~S~DgG~tW~~~~~~----~~~~~~~~~i~~~~-~~~~~~~~~-~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~ 175 (327)
T 2xbg_A 103 HTTDGGQSWSQIPLD----PKLPGSPRLIKALG-NGSAEMITN-VGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGE 175 (327)
T ss_dssp EESSTTSSCEECCCC----TTCSSCEEEEEEEE-TTEEEEEET-TCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSC
T ss_pred EECCCCCCceECccc----cCCCCCeEEEEEEC-CCCEEEEeC-CccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCc
Confidence 333444444332211 11223466777765 444555554 554432 1222322222 223456789999999988
Q ss_pred EEEEEecCCCeEE-EEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccccc----c
Q 014125 279 YLYTGGRKDPYIL-CWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQA----A 353 (430)
Q Consensus 279 ~l~~~~~~d~~i~-i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~----~ 353 (430)
+++++. +|.+. -.|-. +.. ..... ......+..+.+.++++.++. +.+|.+++.+.+.++.-..+.. +
T Consensus 176 ~~~~g~--~G~~~~S~d~g-G~t-W~~~~--~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G~tW~~~~~~~~~~ 248 (327)
T 2xbg_A 176 YVAVSS--RGSFYSTWEPG-QTA-WEPHN--RTTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNSENWGELLSPLRRN 248 (327)
T ss_dssp EEEEET--TSSEEEEECTT-CSS-CEEEE--CCSSSCEEEEEECTTSCEEEE-ETTTEEEEEETTEEEEECCCBCTTSSC
T ss_pred EEEEEC--CCcEEEEeCCC-CCc-eeECC--CCCCCccceeEECCCCCEEEE-eCCceEEEecCCCCCeeEeccCCcccC
Confidence 776654 45444 34421 111 11111 234457788999998876654 4578887775332333222221 2
Q ss_pred cCCeeEEEEcCCCcEEEEeeCCcee
Q 014125 354 ADTVNGFSFHPFLPMAASSSGHRRF 378 (430)
Q Consensus 354 ~~~v~~~~~~~~~~~l~s~~~d~~~ 378 (430)
...+.++.+.+++.+++.+. ++.+
T Consensus 249 ~~~~~~v~~~~~~~~~~~g~-~g~i 272 (327)
T 2xbg_A 249 SVGFLDLAYRTPNEVWLAGG-AGAL 272 (327)
T ss_dssp CSCEEEEEESSSSCEEEEES-TTCE
T ss_pred CcceEEEEecCCCEEEEEeC-CCeE
Confidence 23588999998877766654 4544
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=0.0092 Score=51.72 Aligned_cols=198 Identities=13% Similarity=0.152 Sum_probs=113.6
Q ss_pred EEEECCCCcEEEEE-------------cCCeEEEEEcCCCCCcccccccccCC-CCCCCcceEEEEEcCC--CC-ceEEE
Q 014125 178 SVAFNPTGTKIFAG-------------YNKSVRVFDVHRPGRDFEKYSTLKGN-KEGQAGIMSAIAFSPT--HT-GMLAI 240 (430)
Q Consensus 178 ~~~~~~~~~~l~~~-------------~d~~i~v~d~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~--~~-~~l~~ 240 (430)
.+...|+|..++++ .+|.|.++|...+......+. +... ..........+.+.++ +. .++++
T Consensus 54 Di~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~-~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vv 132 (355)
T 3sre_A 54 DLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELE-IIGNTLDISSFNPHGISTFIDDDNTVYLLVV 132 (355)
T ss_dssp EEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECE-EECSSCCGGGCCEEEEEEEECTTCCEEEEEE
T ss_pred eeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEE-ccCCCCCcCceeeeeeEEEECCCCcEEEEEE
Confidence 56667777666654 589999999875433222211 1110 1122345667777552 33 35555
Q ss_pred ecC--CCeEEEEEcCCc--e--eeEEeecc-ccCeEEEEEccCCCEEEEEec----------------CCCeEEEEeCCC
Q 014125 241 GSY--SQTSAIYREDNM--E--LLYVLHGQ-EGGVTHVQFSRDGNYLYTGGR----------------KDPYILCWDLRK 297 (430)
Q Consensus 241 ~~~--dg~v~~~d~~~~--~--~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~----------------~d~~i~i~d~~~ 297 (430)
-.. +.+|.+|++... . .+..+.+. -...+.+.+.++|.+.++... ..|.|.-+|...
T Consensus 133 nh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~ 212 (355)
T 3sre_A 133 NHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPND 212 (355)
T ss_dssp ECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTC
T ss_pred ECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCe
Confidence 444 567888876543 1 22333322 235789999999986665430 124555555531
Q ss_pred CceEEEEeecccCCccceEEEEEcCCCCEEEEEc-cCCcEEEEEcCC-CCe--ecccccccCCeeEEEEcC-CCcEEEEe
Q 014125 298 AVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGG-QDGLVHIYDLQT-GKW--ISGFQAAADTVNGFSFHP-FLPMAASS 372 (430)
Q Consensus 298 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~-~~~--~~~~~~~~~~v~~~~~~~-~~~~l~s~ 372 (430)
.. .. ...-...+.++|+||++.|+.+. ..+.|+.|++.. ++. ...+ ...+....++..+ +|++.+++
T Consensus 213 ---~~-~~---~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~ 284 (355)
T 3sre_A 213 ---VR-VV---AEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGC 284 (355)
T ss_dssp ---CE-EE---EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEE
T ss_pred ---EE-Ee---ecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEe
Confidence 11 11 11234467899999998776654 568899999863 332 1223 2245678899999 59988877
Q ss_pred eCC-ceeeecCCC
Q 014125 373 SGH-RRFPVDDFE 384 (430)
Q Consensus 373 ~~d-~~~~vw~~~ 384 (430)
..+ +.+..++.+
T Consensus 285 ~~~g~~v~~~~P~ 297 (355)
T 3sre_A 285 HPNGMRIFFYDAE 297 (355)
T ss_dssp ESCHHHHHSCCTT
T ss_pred cCCceEEEEECCC
Confidence 644 344445443
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=97.79 E-value=0.043 Score=55.75 Aligned_cols=190 Identities=12% Similarity=0.117 Sum_probs=91.3
Q ss_pred CCceeEEEECcC------CceEEEecC-CCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccC
Q 014125 60 NNFLKGIKWSPD------GSSFLTSSE-DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS 132 (430)
Q Consensus 60 ~~~v~~~~~sp~------~~~l~s~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 132 (430)
.+.|.|+++.|. ++++|.|.. |++|+|+++++.+..... .........+++....
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~----------------~L~~~~~p~si~l~~~-- 614 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKE----------------MLGGEIIPRSILMTTF-- 614 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEE----------------ECCSSCCEEEEEEEEE--
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEE----------------ECCCCCCCcEEEEEEe--
Confidence 457999999863 369999986 999999999853221100 0111112222322110
Q ss_pred ccCCCCceEEEEeCCCcEEEEec--cCCceeeeeecccccccccceEEEEECCCCc-EEEEEcCCeEEEEEcCCCCCccc
Q 014125 133 ASDPTSCVFASTTRDHPIHLWDA--TTGLLRCTYRAYDAVDEITAAFSVAFNPTGT-KIFAGYNKSVRVFDVHRPGRDFE 209 (430)
Q Consensus 133 ~~~~~~~~l~~~~~dg~i~vwd~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~d~~i~v~d~~~~~~~~~ 209 (430)
....+|..|-.||.+..+.+ .+|.....-...-+ ..++.-..+...+. .+++..+....+|.-+. . +.
T Consensus 615 ---~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG---~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~--~-l~ 685 (1158)
T 3ei3_A 615 ---ESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLG---TQPTVLRTFRSLSTTNVFACSDRPTVIYSSNH--K-LV 685 (1158)
T ss_dssp ---TTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECC---SSCCEEEEEESSSCEEEEEESSSCEEEEESSS--S-EE
T ss_pred ---CCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcC---CCceEEEEEeeCCceeEEEECCCCEEEEEcCC--c-eE
Confidence 12357888999998765554 34444322111111 11343333433332 33344455544544321 1 10
Q ss_pred ccccccCCCCCCCcceEEEEEcCCC-CceEEEecCCCeEEEEEcCCce--eeEEeeccccCeEEEEEccCCCEEEEEe
Q 014125 210 KYSTLKGNKEGQAGIMSAIAFSPTH-TGMLAIGSYSQTSAIYREDNME--LLYVLHGQEGGVTHVQFSRDGNYLYTGG 284 (430)
Q Consensus 210 ~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~~~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 284 (430)
+..+.. ...-....|+... ..-++..+ ++.++|..+.+.. ..+++. -...+..++++|..+.++++.
T Consensus 686 -~s~l~~-----~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~ 755 (1158)
T 3ei3_A 686 -FSNVNL-----KEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQEVSQCFGVLS 755 (1158)
T ss_dssp -EEEBSS-----SCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEEE
T ss_pred -EeccCh-----HHhceEeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEEe-CCCCceEEEEcCCCCEEEEEE
Confidence 111100 0111233454321 22344333 4568888765432 222332 335677888888777655443
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=0.016 Score=50.59 Aligned_cols=247 Identities=11% Similarity=0.041 Sum_probs=118.7
Q ss_pred CceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCce
Q 014125 61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV 140 (430)
Q Consensus 61 ~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (430)
..-..|+|.|+|+++++ ..+|.|++++. ++. ..+... . ...........+++.|.. ..++.+
T Consensus 29 ~~P~~ia~~pdG~l~V~-e~~g~I~~~d~-~G~--~~~~~~----------~-v~~~g~~g~~gia~~pdf---~~~g~l 90 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVT-ERPGRLVLISP-SGK--KLVASF----------D-VANVGEAGLLGLALHPEF---PKKSWV 90 (354)
T ss_dssp SCEEEEEEEETTEEEEE-ETTTEEEEECS-SCE--EEEEEC----------C-CCCSTTCSEEEEEECTTT---TTSCEE
T ss_pred CCCeEEEEcCCCeEEEE-eCCCEEEEEeC-CCc--eEeecc----------c-eeecCCCceeeEEeCCCC---CcCCEE
Confidence 34678999999986555 55689998863 221 000000 0 011112356778884421 112444
Q ss_pred EEEEeC---C----CcEEEEeccCC--ce---eeeeec-ccccccccceEEEEECCCCcEEEEEcC--------------
Q 014125 141 FASTTR---D----HPIHLWDATTG--LL---RCTYRA-YDAVDEITAAFSVAFNPTGTKIFAGYN-------------- 193 (430)
Q Consensus 141 l~~~~~---d----g~i~vwd~~~~--~~---~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~d-------------- 193 (430)
+++-+. + ..|..|+...+ .. ...+.. .....| ....++|.|+|.++++..+
T Consensus 91 yv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h--~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~ 168 (354)
T 3a9g_A 91 YLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIH--NGGRIRFGPDGMLYITTGDAADPRLAQDLSSLA 168 (354)
T ss_dssp EEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSC--CCCCEEECTTSCEEEECCCTTCGGGGTCTTCCS
T ss_pred EEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCc--CCceEEECCCCcEEEEECCCCCCccccCCCCCC
Confidence 444332 3 56777776544 11 111111 111111 3457999999987765322
Q ss_pred CeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCC---eEEEEEcCC----------------
Q 014125 194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ---TSAIYREDN---------------- 254 (430)
Q Consensus 194 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---~v~~~d~~~---------------- 254 (430)
+.|.-++.+..-..-..+........++. ....++|+|+.+.++++-.... .|.+.....
T Consensus 169 G~I~ri~~dG~~p~~npf~~~~i~a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~ 247 (354)
T 3a9g_A 169 GKILRVDEEGRPPADNPFPNSPIWSYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEF 247 (354)
T ss_dssp SEEEEECTTSCCCTTSSSTTCCEEEECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTS
T ss_pred eEEEEEcCCCCCCCCCCCCCCcEEEEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCC
Confidence 34444444321000000000000001221 2457889985555555432221 233322110
Q ss_pred ceeeEEeeccccCeEEEEEc-------cCCCEEEEEecCCCeEEEEeCCCCceEE--EEeecccCCccceEEEEEcCCCC
Q 014125 255 MELLYVLHGQEGGVTHVQFS-------RDGNYLYTGGRKDPYILCWDLRKAVQVV--YKLYRSSEHTNQRILFDIEPSGR 325 (430)
Q Consensus 255 ~~~~~~~~~~~~~i~~~~~~-------~~~~~l~~~~~~d~~i~i~d~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~ 325 (430)
..++..+.........++|. .+|.++++.- ..+.|...++....... ..+. ......+..+++.|+|.
T Consensus 248 ~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~-~~~~v~~~~~~~~g~~~~~~~~~--~~~~~rp~~v~~~pDG~ 324 (354)
T 3a9g_A 248 VDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACL-RGSMLAAVNFGDNMEVRKISTFF--KNVFGRLRDVVIDDDGG 324 (354)
T ss_dssp CCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEET-TTTEEEEEEECGGGCEEEEEEEC--TTTSCCEEEEEECTTSC
T ss_pred cCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEc-CCCEEEEEEECCCCcccceeeec--cCCCCCeeEEEECCCCc
Confidence 01222331112357788884 4565555544 77889888887542221 1111 12245688999999997
Q ss_pred EEEEEc
Q 014125 326 HLGTGG 331 (430)
Q Consensus 326 ~l~~~~ 331 (430)
+.++..
T Consensus 325 lyv~~~ 330 (354)
T 3a9g_A 325 ILISTS 330 (354)
T ss_dssp EEEEEC
T ss_pred EEEEEe
Confidence 666553
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.022 Score=49.10 Aligned_cols=241 Identities=11% Similarity=0.021 Sum_probs=123.4
Q ss_pred CeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeeccc-ccccccceEEEEECCC---CcEEEEE----
Q 014125 120 ESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYD-AVDEITAAFSVAFNPT---GTKIFAG---- 191 (430)
Q Consensus 120 ~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~---~~~l~~~---- 191 (430)
..-+.++| .|+|.++++-...|.|++++...++......... ..........|+++|+ +..|..+
T Consensus 32 ~~P~~ia~-------~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~ 104 (347)
T 3das_A 32 NSPWGLAP-------LPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSA 104 (347)
T ss_dssp SSEEEEEE-------CTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECS
T ss_pred CCceEEEE-------cCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecC
Confidence 34567777 7788877776558999999876665422211110 0112236789999995 3444432
Q ss_pred cCCeEEEEEcCCCCC---cc---ccc-ccccCCCCCCCcceEEEEEcCCCCceEEEec-------------CCCeEEEEE
Q 014125 192 YNKSVRVFDVHRPGR---DF---EKY-STLKGNKEGQAGIMSAIAFSPTHTGMLAIGS-------------YSQTSAIYR 251 (430)
Q Consensus 192 ~d~~i~v~d~~~~~~---~~---~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-------------~dg~v~~~d 251 (430)
.++.|.-|....... .. +.+ ..+.. ...| ....|.|.|++ .++++.+ ..|.|.-++
T Consensus 105 ~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~-~~~H--~g~~l~fgpDG-~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~ 180 (347)
T 3das_A 105 SDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPK-GVIH--NGGRIAFGPDK-MLYAGTGESGDTGLSQDRKSLGGKILRMT 180 (347)
T ss_dssp SSEEEEEEEBCTTSCTTCCBCCCEEEEEEECC-CSSC--CCCCEEECTTS-CEEEECBCTTCGGGTTCTTCSTTCEEEEC
T ss_pred CCCEEEEEEeCCCCcccccCCCcEEEEEcCCC-CCCc--cCccccCCCCC-CEEEEECCCCCCccccCCCCCCCEEEEEe
Confidence 345666666654210 11 111 11111 1223 34679999954 5555533 235565555
Q ss_pred cCCc--------e-eeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceE--------------EEEeecc
Q 014125 252 EDNM--------E-LLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQV--------------VYKLYRS 308 (430)
Q Consensus 252 ~~~~--------~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~--------------~~~~~~~ 308 (430)
.... . .+.. .+|. ....++|+|+|.+.++-...|+.=.|--+..+... .......
T Consensus 181 ~dG~ip~~nPf~~~~i~a-~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~ 258 (347)
T 3das_A 181 PDGEPAPGNPFPGSPVYS-YGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQW 258 (347)
T ss_dssp TTSSBCTTCSSTTCCEEE-BCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEE
T ss_pred CCCCccCCCCCCCCeEEe-eCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEec
Confidence 5422 1 1111 2343 35689999988755544323332222222221110 0000000
Q ss_pred cCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCe----ecccccccCCeeEEEEcCCCcEEEEeeC
Q 014125 309 SEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKW----ISGFQAAADTVNGFSFHPFLPMAASSSG 374 (430)
Q Consensus 309 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 374 (430)
..+......++|. +|..++..-..+.|....+..... ...+.+....+..|+..|+|.++++.+.
T Consensus 259 ~~~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td~ 327 (347)
T 3das_A 259 STDEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTSN 327 (347)
T ss_dssp CTTTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEECT
T ss_pred CCCCCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEcC
Confidence 1111345566766 355555555566677777664432 2223334467999999999987777653
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.03 Score=48.80 Aligned_cols=105 Identities=18% Similarity=0.255 Sum_probs=63.0
Q ss_pred ceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCC---CCceEEEecCC-----Ce
Q 014125 175 AAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPT---HTGMLAIGSYS-----QT 246 (430)
Q Consensus 175 ~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~~d-----g~ 246 (430)
....++|.|+|+++++..++.|++++ .. . ...+..+. ...........++++|+ ++.++++-... +.
T Consensus 32 ~P~~ia~~pdG~l~V~e~~g~I~~i~-~g--~-~~~~~~~~-v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 32 VPWALAFLPDGGMLIAERPGRIRLFR-EG--R-LSTYAELS-VYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp CEEEEEECTTSCEEEEETTTEEEEEE-TT--E-EEEEEECC-CCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CceEEEEcCCCeEEEEeCCCeEEEEE-CC--C-ccEeecce-EeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 56689999999988888789999998 22 1 11111111 11222346789999995 45555554433 67
Q ss_pred EEEEEcCCce-----ee-EEee---ccccCeEEEEEccCCCEEEEEe
Q 014125 247 SAIYREDNME-----LL-YVLH---GQEGGVTHVQFSRDGNYLYTGG 284 (430)
Q Consensus 247 v~~~d~~~~~-----~~-~~~~---~~~~~i~~~~~~~~~~~l~~~~ 284 (430)
|..|+..... .+ ..+. ........++|.|+|.+.++.+
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 8888876431 11 1122 1112346899999996555543
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.014 Score=49.66 Aligned_cols=191 Identities=13% Similarity=0.160 Sum_probs=95.5
Q ss_pred CCceEEEEe-CC-----CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcC-----CeEEEEEcCCC
Q 014125 137 TSCVFASTT-RD-----HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYN-----KSVRVFDVHRP 204 (430)
Q Consensus 137 ~~~~l~~~~-~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d-----~~i~v~d~~~~ 204 (430)
++.+++.|+ .+ ..+.+||+.+++....-..... . .-.+++. .++.+++ +|.+ ..+.+||+.+.
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~---r-~~~~~~~-~~~~l~v~GG~~~~~~~~~~~~~d~~~~ 88 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRK---R-RYVASVS-LHDRIYVIGGYDGRSRLSSVECLDYTAD 88 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSC---C-BSCEEEE-ETTEEEEECCBCSSCBCCCEEEEETTCC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChh---h-ccccEEE-ECCEEEEEcCCCCCccCceEEEEECCCC
Confidence 445666666 33 3688999888764432221111 0 1112222 2455555 4433 46889998764
Q ss_pred CC-cccccccccCCCCCCCcceEEEEEcCCCCceEEEecCC-----CeEEEEEcCCceeeE--EeeccccCeEEEEEccC
Q 014125 205 GR-DFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS-----QTSAIYREDNMELLY--VLHGQEGGVTHVQFSRD 276 (430)
Q Consensus 205 ~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~v~~~d~~~~~~~~--~~~~~~~~i~~~~~~~~ 276 (430)
.. .+.....+.... .....+.+ ++.+++.|+.+ ..+.+||..+.+-.. .+......-..+.+ +
T Consensus 89 ~~~~W~~~~~~p~~r----~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~ 159 (301)
T 2vpj_A 89 EDGVWYSVAPMNVRR----GLAGATTL---GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--S 159 (301)
T ss_dssp TTCCCEEECCCSSCC----BSCEEEEE---TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--T
T ss_pred CCCeeEECCCCCCCc----cceeEEEE---CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--C
Confidence 30 122222221111 11222233 45677777654 368899987765332 22211112222222 5
Q ss_pred CCEEEEEecCC-----CeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccC-----CcEEEEEcCCCCe
Q 014125 277 GNYLYTGGRKD-----PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQD-----GLVHIYDLQTGKW 346 (430)
Q Consensus 277 ~~~l~~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~ 346 (430)
++.++.++ .+ ..+.+||+.+..-. ..............+.+ ++++++.|+.+ ..+.+||+.+.+.
T Consensus 160 ~~iyv~GG-~~~~~~~~~~~~~d~~~~~W~--~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 234 (301)
T 2vpj_A 160 GVIYCLGG-YDGLNILNSVEKYDPHTGHWT--NVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSW 234 (301)
T ss_dssp TEEEEECC-BCSSCBCCCEEEEETTTTEEE--EECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred CEEEEECC-CCCCcccceEEEEeCCCCcEE--eCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcE
Confidence 66666665 43 46889998876322 22111111112222332 56777777764 4689999987654
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=97.40 E-value=0.021 Score=50.13 Aligned_cols=153 Identities=16% Similarity=0.240 Sum_probs=93.5
Q ss_pred CCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccc------
Q 014125 137 TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEK------ 210 (430)
Q Consensus 137 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~------ 210 (430)
++..++.+- ++.||.-++..+..-+.+...... ....+..+..+|+|.+|+...+..|.|..+..+......
T Consensus 31 n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i-~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~ 108 (452)
T 3pbp_A 31 NGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHL-VLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDA 108 (452)
T ss_dssp TTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTC-CCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHT
T ss_pred CCCEEEEEE-CCEEEEEECCCCCcceEEecCccc-ccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccc
Confidence 344444432 356777676644333333332100 011567899999999999888899999999743211110
Q ss_pred ----cccccCCCCCCCcceEEEEEcCCCC--ceEEEecCCCeEEEEEcCCc--eeeEEee---------ccccCeEEEEE
Q 014125 211 ----YSTLKGNKEGQAGIMSAIAFSPTHT--GMLAIGSYSQTSAIYREDNM--ELLYVLH---------GQEGGVTHVQF 273 (430)
Q Consensus 211 ----~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~~~~~dg~v~~~d~~~~--~~~~~~~---------~~~~~i~~~~~ 273 (430)
...+.........+|..+.|+|-+. ..|++-..|+.|++||+... ++. .+. .....|.+++|
T Consensus 109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~F 187 (452)
T 3pbp_A 109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEF 187 (452)
T ss_dssp TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEE
T ss_pred cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEE
Confidence 0011111111357899999999653 48999999999999998752 222 221 12257889999
Q ss_pred ccCCCEEEE--EecCCCeEEEE
Q 014125 274 SRDGNYLYT--GGRKDPYILCW 293 (430)
Q Consensus 274 ~~~~~~l~~--~~~~d~~i~i~ 293 (430)
.+++-.|++ .. .+|.|+-.
T Consensus 188 g~~~lTLYvl~~t-~~GDIYAl 208 (452)
T 3pbp_A 188 SKDGLTLYCLNTT-EGGDIFAF 208 (452)
T ss_dssp CTTSSCEEEEECT-TSCEEEEE
T ss_pred cCCCcEEEEEecC-CCCCEEEE
Confidence 998776666 43 56777654
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=97.37 E-value=0.15 Score=51.90 Aligned_cols=181 Identities=10% Similarity=0.083 Sum_probs=102.3
Q ss_pred CcEEEEeccCCceeeeeecccccccccceEEEEECCC-CcEEEEEc-----------CCeEEEEEcCCCCCccccccccc
Q 014125 148 HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT-GTKIFAGY-----------NKSVRVFDVHRPGRDFEKYSTLK 215 (430)
Q Consensus 148 g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~-----------d~~i~v~d~~~~~~~~~~~~~~~ 215 (430)
+.|++.|..+.+.+..+..... +....+..+.|..+ ..++++|. .|.|.+|++.. ..++....
T Consensus 807 s~i~lidp~t~~~i~~~~l~~n-E~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~--~kL~lv~~-- 881 (1158)
T 3ei3_A 807 HNLLIIDQHTFEVLHAHQFLQN-EYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSD--GKLQTVAE-- 881 (1158)
T ss_dssp EEEEEEETTTCCEEEEEECCTT-EEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEET--TEEEEEEE--
T ss_pred EEEEEEeCCCCeEEEEEeCCCC-cceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEEC--CEEEEEEE--
Confidence 3477888777776666554432 22223333445433 35666431 36799999862 12222111
Q ss_pred CCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeC
Q 014125 216 GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDL 295 (430)
Q Consensus 216 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~ 295 (430)
....+++++++--. + .|++|- ..+|++|++...+.+..-..+-..|..+.....+.++++|. .-..|.++..
T Consensus 882 ---~~v~g~v~al~~~~--g-~Lla~i-g~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD-~~~Sv~~~~y 953 (1158)
T 3ei3_A 882 ---KEVKGAVYSMVEFN--G-KLLASI-NSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGD-LMRSVLLLAY 953 (1158)
T ss_dssp ---EEESSCEEEEEEET--T-EEEEEE-TTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEE-SSBCEEEEEE
T ss_pred ---EEcCCcCEEEeeeC--C-EEEEEc-CCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEE-hhheEEEEEE
Confidence 12346788887543 3 344333 58899999986654431111112233333334577888888 5666666544
Q ss_pred CCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCC
Q 014125 296 RKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQT 343 (430)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 343 (430)
+........+.. ......++++.+-.+ ..++.+..+|.+.+...+.
T Consensus 954 ~~~~~~L~~~a~-D~~~~~vta~~~ld~-~t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 954 KPMEGNFEEIAR-DFNPNWMSAVEILDD-DNFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp ETTTTEEEEEEE-CCSCBCEEEEEEEET-TEEEEEETTSEEEEEEECT
T ss_pred EcCCCeEEEEEe-ecccccEEEEEEEcc-CcEEEEcCCCcEEEEecCC
Confidence 332222223222 445677888888654 4677789999999998764
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.019 Score=48.73 Aligned_cols=189 Identities=13% Similarity=0.201 Sum_probs=95.6
Q ss_pred CCceEEEEeCC-----CcEEEEeccCCc---eeeeeecccccccccceEEEEECCCCcEEEEE-cC-----CeEEEEEcC
Q 014125 137 TSCVFASTTRD-----HPIHLWDATTGL---LRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN-----KSVRVFDVH 202 (430)
Q Consensus 137 ~~~~l~~~~~d-----g~i~vwd~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d-----~~i~v~d~~ 202 (430)
++.+++.|+.+ ..+.+||+.+++ ....-..... ......+.+ ++++++.| .+ ..+.+||+.
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~---r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~ 136 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVR---RGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPN 136 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSC---CBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETT
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCC---ccceeEEEE--CCEEEEEcccCCCcccceEEEEcCC
Confidence 45667777654 468999998876 4333221111 011122222 55555543 32 468888876
Q ss_pred CCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCC-----CeEEEEEcCCceeeEE--eeccccCeEEEEEcc
Q 014125 203 RPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS-----QTSAIYREDNMELLYV--LHGQEGGVTHVQFSR 275 (430)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~v~~~d~~~~~~~~~--~~~~~~~i~~~~~~~ 275 (430)
+. .+............ ...+.+ ++.+++.|+.+ ..+.+||+.+.+-... +.........+.+
T Consensus 137 ~~--~W~~~~~~p~~r~~----~~~~~~---~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-- 205 (301)
T 2vpj_A 137 ID--QWSMLGDMQTAREG----AGLVVA---SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL-- 205 (301)
T ss_dssp TT--EEEEEEECSSCCBS----CEEEEE---TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--
T ss_pred CC--eEEECCCCCCCccc----ceEEEE---CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--
Confidence 53 22222222111111 222223 45677777754 4588999887654322 1111111222232
Q ss_pred CCCEEEEEecCC-----CeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccC-----CcEEEEEcCCCC
Q 014125 276 DGNYLYTGGRKD-----PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQD-----GLVHIYDLQTGK 345 (430)
Q Consensus 276 ~~~~l~~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~ 345 (430)
+++.++.++ .+ ..+.+||+.+..-. .+............+.+ ++++++.|+.+ ..+.+||+.+.+
T Consensus 206 ~~~i~v~GG-~~~~~~~~~v~~yd~~~~~W~--~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 206 NDHIYVVGG-FDGTAHLSSVEAYNIRTDSWT--TVTSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp TTEEEEECC-BCSSSBCCCEEEEETTTTEEE--EECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred CCEEEEEeC-CCCCcccceEEEEeCCCCcEE--ECCCCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 555666665 43 46899999876432 22111111122222333 56777777765 357888887655
Q ss_pred e
Q 014125 346 W 346 (430)
Q Consensus 346 ~ 346 (430)
.
T Consensus 281 W 281 (301)
T 2vpj_A 281 W 281 (301)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=97.33 E-value=0.048 Score=46.51 Aligned_cols=189 Identities=12% Similarity=0.148 Sum_probs=94.2
Q ss_pred CCceEEEEeCC----CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-Ec----C-----CeEEEEEcC
Q 014125 137 TSCVFASTTRD----HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GY----N-----KSVRVFDVH 202 (430)
Q Consensus 137 ~~~~l~~~~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~----d-----~~i~v~d~~ 202 (430)
++.+++.|+.+ ..+.+||+.+++....-..... . .-.+++.. ++.+++. |. + +.+.+||+.
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~-r---~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~ 98 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVP-R---SGLAGCVV-GGLLYAVGGRNNSPDGNTDSSALDCYNPM 98 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSC-C---BSCEEEEE-TTEEEEECCEEEETTEEEECCCEEEEETT
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcc-c---ccceEEEE-CCEEEEECCCcCCCCCCeecceEEEECCC
Confidence 45566666642 3688999888765443211111 0 11122222 4555553 33 2 468888886
Q ss_pred CCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCC-----CeEEEEEcCCceeeEE--eeccccCeEEEEEcc
Q 014125 203 RPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS-----QTSAIYREDNMELLYV--LHGQEGGVTHVQFSR 275 (430)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~v~~~d~~~~~~~~~--~~~~~~~i~~~~~~~ 275 (430)
+. .+.....+... ......+.+ ++.+++.|+.+ ..+.+||..+.+-... +......-..+.+
T Consensus 99 ~~--~W~~~~~~p~~----r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-- 167 (308)
T 1zgk_A 99 TN--QWSPCAPMSVP----RNRIGVGVI---DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-- 167 (308)
T ss_dssp TT--EEEECCCCSSC----CBTCEEEEE---TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--
T ss_pred CC--eEeECCCCCcC----ccccEEEEE---CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--
Confidence 53 22222211111 111222333 45677777643 4688899887643222 1111112222233
Q ss_pred CCCEEEEEecCC-----CeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccC-----CcEEEEEcCCCC
Q 014125 276 DGNYLYTGGRKD-----PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQD-----GLVHIYDLQTGK 345 (430)
Q Consensus 276 ~~~~l~~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~ 345 (430)
+++.++.++ .+ ..+.+||+.+..-. ..............+.+ ++++++.|+.+ ..+.+||+.+.+
T Consensus 168 ~~~iyv~GG-~~~~~~~~~~~~yd~~~~~W~--~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 242 (308)
T 1zgk_A 168 NRLLYAVGG-FDGTNRLNSAECYYPERNEWR--MITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETET 242 (308)
T ss_dssp TTEEEEECC-BCSSCBCCCEEEEETTTTEEE--ECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred CCEEEEEeC-CCCCCcCceEEEEeCCCCeEe--eCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCc
Confidence 555555555 43 46889998776322 22111111222222333 56777777764 459999998765
Q ss_pred e
Q 014125 346 W 346 (430)
Q Consensus 346 ~ 346 (430)
.
T Consensus 243 W 243 (308)
T 1zgk_A 243 W 243 (308)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=97.30 E-value=0.027 Score=49.38 Aligned_cols=133 Identities=13% Similarity=0.039 Sum_probs=87.0
Q ss_pred CCeEEEEEcCCceeeEEeecc----ccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceE----------EEEeeccc
Q 014125 244 SQTSAIYREDNMELLYVLHGQ----EGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQV----------VYKLYRSS 309 (430)
Q Consensus 244 dg~v~~~d~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~----------~~~~~~~~ 309 (430)
++.||.-++......+.+... ...|..+..+|+|.+|+..+ +..|.|-.+..+... ....+...
T Consensus 40 ~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g--~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~ 117 (452)
T 3pbp_A 40 DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN--DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSID 117 (452)
T ss_dssp TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC--SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGG
T ss_pred CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec--CCeEEEEEecCccccCcccccccccceeEEEcC
Confidence 467777777644444444432 23688899999999999987 778999888732110 00111111
Q ss_pred ----CCccceEEEEEcCC---CCEEEEEccCCcEEEEEcCCCC--eecccc---------cccCCeeEEEEcCCCcEEEE
Q 014125 310 ----EHTNQRILFDIEPS---GRHLGTGGQDGLVHIYDLQTGK--WISGFQ---------AAADTVNGFSFHPFLPMAAS 371 (430)
Q Consensus 310 ----~~~~~v~~~~~~~~---~~~l~~~~~dg~i~vwd~~~~~--~~~~~~---------~~~~~v~~~~~~~~~~~l~s 371 (430)
....+|..+.|+|- +..|++-..|+.|++||+.... +. .++ .....|.+++|.+++-.|..
T Consensus 118 ~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYv 196 (452)
T 3pbp_A 118 EEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYC 196 (452)
T ss_dssp GCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEE
T ss_pred CcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEE
Confidence 13577999999996 4689999999999999998522 22 221 12246889999987775555
Q ss_pred ee--CCceee
Q 014125 372 SS--GHRRFP 379 (430)
Q Consensus 372 ~~--~d~~~~ 379 (430)
.+ ..|.|.
T Consensus 197 l~~t~~GDIY 206 (452)
T 3pbp_A 197 LNTTEGGDIF 206 (452)
T ss_dssp EECTTSCEEE
T ss_pred EecCCCCCEE
Confidence 44 556554
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=97.24 E-value=0.11 Score=46.99 Aligned_cols=113 Identities=14% Similarity=0.296 Sum_probs=57.6
Q ss_pred CeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeeccccc---ccccceEEEEECCC---CcEEE-EEc
Q 014125 120 ESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAV---DEITAAFSVAFNPT---GTKIF-AGY 192 (430)
Q Consensus 120 ~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~---~~~l~-~~~ 192 (430)
...+.++| .|+|+++++-...+.|++++..+++........... ........|+|+|+ +..|. +..
T Consensus 27 ~~P~~~a~-------~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s 99 (454)
T 1cru_A 27 NKPHALLW-------GPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGT 99 (454)
T ss_dssp SSEEEEEE-------CTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEE
T ss_pred CCceEEEE-------cCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEe
Confidence 34567777 678887766544457888887655543222221111 12236779999995 44444 322
Q ss_pred -------------CCeEEEEEcCCCCCcccccccccC-CCCCCCcceEEEEEcCCCCceEEE
Q 014125 193 -------------NKSVRVFDVHRPGRDFEKYSTLKG-NKEGQAGIMSAIAFSPTHTGMLAI 240 (430)
Q Consensus 193 -------------d~~i~v~d~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~ 240 (430)
...|.-++.............+.. ...........|+|.|++ .++++
T Consensus 100 ~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG-~Lyv~ 160 (454)
T 1cru_A 100 FKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQ-KIYYT 160 (454)
T ss_dssp EECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTS-CEEEE
T ss_pred ccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCC-eEEEE
Confidence 235666665432211111111110 001112347899999965 45554
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.036 Score=47.10 Aligned_cols=189 Identities=14% Similarity=0.244 Sum_probs=91.9
Q ss_pred CceEEEEeCC----CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-EcC-----CeEEEEEcCCCCCc
Q 014125 138 SCVFASTTRD----HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYN-----KSVRVFDVHRPGRD 207 (430)
Q Consensus 138 ~~~l~~~~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d-----~~i~v~d~~~~~~~ 207 (430)
+.+++.|+.+ ..+..||+.+.+....-..... . .-.+++.. ++.+++. |.+ ..+.+||..+. .
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~-r---~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~--~ 88 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSR-R---CRAGMVYM-AGLVFAVGGFNGSLRVRTVDSYDPVKD--Q 88 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSC-C---BSCEEEEE-TTEEEEESCBCSSSBCCCEEEEETTTT--E
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcc-c---ccceEEEE-CCEEEEEeCcCCCccccceEEECCCCC--c
Confidence 4455666543 3588899888764433111111 0 11122222 5555553 433 45888887653 2
Q ss_pred ccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCC-----eEEEEEcCCceeeEE--eeccccCeEEEEEccCCCEE
Q 014125 208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ-----TSAIYREDNMELLYV--LHGQEGGVTHVQFSRDGNYL 280 (430)
Q Consensus 208 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~v~~~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l 280 (430)
+.....+..... ....+.+ ++.+++.|+.++ .+.+||+.+.+-... +.........+.+ +++.+
T Consensus 89 W~~~~~~p~~r~----~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iy 159 (302)
T 2xn4_A 89 WTSVANMRDRRS----TLGAAVL---NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLY 159 (302)
T ss_dssp EEEECCCSSCCB----SCEEEEE---TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEE
T ss_pred eeeCCCCCcccc----ceEEEEE---CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEE
Confidence 222222211111 1222233 456777777553 578889877653322 1111111222222 55555
Q ss_pred EEEecC------CCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccC-----CcEEEEEcCCCCe
Q 014125 281 YTGGRK------DPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQD-----GLVHIYDLQTGKW 346 (430)
Q Consensus 281 ~~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~ 346 (430)
+.++.. -..+.+||+.+..-. ..............+.+ ++++++.|+.+ ..+.+||+.+.+.
T Consensus 160 v~GG~~~~~~~~~~~~~~yd~~~~~W~--~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 232 (302)
T 2xn4_A 160 AVGGYDVASRQCLSTVECYNATTNEWT--YIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAW 232 (302)
T ss_dssp EECCEETTTTEECCCEEEEETTTTEEE--EECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEE
T ss_pred EEeCCCCCCCccccEEEEEeCCCCcEE--ECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCE
Confidence 555411 245889998876322 22111111122222332 56777777764 3689999987654
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.04 Score=46.80 Aligned_cols=189 Identities=16% Similarity=0.278 Sum_probs=94.3
Q ss_pred CCceEEEEeCC-----CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcC-----CeEEEEEcCCCC
Q 014125 137 TSCVFASTTRD-----HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYN-----KSVRVFDVHRPG 205 (430)
Q Consensus 137 ~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d-----~~i~v~d~~~~~ 205 (430)
++.+++.|+.+ ..+.+||+.+.+....-...... .....+.+ ++.+++ +|.+ ..+.+||+.+.
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r---~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~- 134 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRR---STLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSN- 134 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCC---BSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTT-
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccc---cceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCC-
Confidence 45667777654 35888998887654432221110 01112222 455555 5544 35778887653
Q ss_pred CcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCC-------CeEEEEEcCCceeeEE--eeccccCeEEEEEccC
Q 014125 206 RDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS-------QTSAIYREDNMELLYV--LHGQEGGVTHVQFSRD 276 (430)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-------g~v~~~d~~~~~~~~~--~~~~~~~i~~~~~~~~ 276 (430)
.+.....+.... .....+.+ ++.+++.|+.+ ..+.+||..+.+-... +.........+.+ +
T Consensus 135 -~W~~~~~~p~~r----~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~ 204 (302)
T 2xn4_A 135 -EWFHVAPMNTRR----SSVGVGVV---GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--N 204 (302)
T ss_dssp -EEEEECCCSSCC----BSCEEEEE---TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--T
T ss_pred -eEeecCCCCCcc----cCceEEEE---CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE--C
Confidence 222222221111 11222223 45677777643 4588999887653322 2111112222222 5
Q ss_pred CCEEEEEecCC-----CeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCC-----cEEEEEcCCCCe
Q 014125 277 GNYLYTGGRKD-----PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDG-----LVHIYDLQTGKW 346 (430)
Q Consensus 277 ~~~l~~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~ 346 (430)
++.++.++ .+ ..+.+||+.+..-. .+............+.+ ++++++.|+.++ .+.+||+.+.+.
T Consensus 205 ~~iyv~GG-~~~~~~~~~~~~yd~~~~~W~--~~~~~~~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 279 (302)
T 2xn4_A 205 NLLYAVGG-HDGPLVRKSVEVYDPTTNAWR--QVADMNMCRRNAGVCAV--NGLLYVVGGDDGSCNLASVEYYNPTTDKW 279 (302)
T ss_dssp TEEEEECC-BSSSSBCCCEEEEETTTTEEE--EECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred CEEEEECC-CCCCcccceEEEEeCCCCCEe--eCCCCCCccccCeEEEE--CCEEEEECCcCCCcccccEEEEcCCCCeE
Confidence 66666665 43 46889999876322 22111111111222222 567777777653 488999887654
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.051 Score=46.21 Aligned_cols=216 Identities=13% Similarity=0.085 Sum_probs=104.4
Q ss_pred CceEEEEeC--CCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-EcC----CeEEEEEcCCCCCcccc
Q 014125 138 SCVFASTTR--DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYN----KSVRVFDVHRPGRDFEK 210 (430)
Q Consensus 138 ~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d----~~i~v~d~~~~~~~~~~ 210 (430)
+.+++.|+. ...+.+||..+++....-..... ......+.+ ++.+++. |.+ ..+.+||+.+. .+..
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~---r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~--~W~~ 84 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEK---RRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKD--SWYS 84 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCC---CBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTT--EEEE
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcc---cceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCC--eEEE
Confidence 345566654 35789999988765433221111 011112222 5555554 433 67888888653 2222
Q ss_pred cccccCCCCCCCcceEEEEEcCCCCceEEEecCC------CeEEEEEcCCceeeEE--eeccccCeEEEEEccCCCEEEE
Q 014125 211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS------QTSAIYREDNMELLYV--LHGQEGGVTHVQFSRDGNYLYT 282 (430)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~v~~~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~ 282 (430)
...+..... ....+.+ ++.+++.|+.+ ..+.+||..+.+-... +.........+.+ +++.++.
T Consensus 85 ~~~~p~~r~----~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~ 155 (306)
T 3ii7_A 85 KLGPPTPRD----SLAACAA---EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVC 155 (306)
T ss_dssp EECCSSCCB----SCEEEEE---TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEE
T ss_pred CCCCCcccc----ceeEEEE---CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEE
Confidence 222211111 1222233 45677777765 4588999887653322 1111111122222 5555555
Q ss_pred EecC--------CCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccC-----CcEEEEEcCCCCeec-
Q 014125 283 GGRK--------DPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQD-----GLVHIYDLQTGKWIS- 348 (430)
Q Consensus 283 ~~~~--------d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~- 348 (430)
++.. -..+.+||+.+..-. .+.........-..+.+ ++++++.|+.+ ..+.+||+.+.+...
T Consensus 156 GG~~~~~~~~~~~~~~~~yd~~~~~W~--~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~ 231 (306)
T 3ii7_A 156 GGSLGNNVSGRVLNSCEVYDPATETWT--ELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMV 231 (306)
T ss_dssp CCEESCTTTCEECCCEEEEETTTTEEE--EECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEEC
T ss_pred CCCCCCCCcccccceEEEeCCCCCeEE--ECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEEC
Confidence 5411 345889999876322 22111111122222322 56777777654 358999998765432
Q ss_pred -ccccccCCeeEEEEcCCCcEEEEeeCC
Q 014125 349 -GFQAAADTVNGFSFHPFLPMAASSSGH 375 (430)
Q Consensus 349 -~~~~~~~~v~~~~~~~~~~~l~s~~~d 375 (430)
.+.........+.+ ++.+++.|+.+
T Consensus 232 ~~~p~~r~~~~~~~~--~~~i~v~GG~~ 257 (306)
T 3ii7_A 232 SPMPWKGVTVKCAAV--GSIVYVLAGFQ 257 (306)
T ss_dssp CCCSCCBSCCEEEEE--TTEEEEEECBC
T ss_pred CCCCCCccceeEEEE--CCEEEEEeCcC
Confidence 22211112222222 56666666643
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.059 Score=45.85 Aligned_cols=189 Identities=9% Similarity=0.105 Sum_probs=95.9
Q ss_pred CCceEEEEeCC----CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcC------CeEEEEEcCCCC
Q 014125 137 TSCVFASTTRD----HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYN------KSVRVFDVHRPG 205 (430)
Q Consensus 137 ~~~~l~~~~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d------~~i~v~d~~~~~ 205 (430)
++.+++.|+.+ ..+.+||+.+++....-...... .....+.+ ++++++ +|.+ ..+.+||..+.
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r---~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~- 128 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPR---DSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTE- 128 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCC---BSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTT-
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccc---cceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCC-
Confidence 45567777654 56888999887654432222111 01112222 555555 4443 46888888753
Q ss_pred CcccccccccCCCCCCCcceEEEEEcCCCCceEEEecC---------CCeEEEEEcCCceeeEE--eeccccCeEEEEEc
Q 014125 206 RDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY---------SQTSAIYREDNMELLYV--LHGQEGGVTHVQFS 274 (430)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---------dg~v~~~d~~~~~~~~~--~~~~~~~i~~~~~~ 274 (430)
.+.....+...... ...+.+ ++.+++.|+. -..+.+||..+.+-... +......-..+.+
T Consensus 129 -~W~~~~~~p~~r~~----~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~- 199 (306)
T 3ii7_A 129 -SWHTKPSMLTQRCS----HGMVEA---NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV- 199 (306)
T ss_dssp -EEEEECCCSSCCBS----CEEEEE---TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-
T ss_pred -ceEeCCCCcCCcce----eEEEEE---CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE-
Confidence 22222222111111 122222 4567777764 34588999887653322 1111111122222
Q ss_pred cCCCEEEEEecCC-----CeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccC-----CcEEEEEcCCC
Q 014125 275 RDGNYLYTGGRKD-----PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQD-----GLVHIYDLQTG 344 (430)
Q Consensus 275 ~~~~~l~~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~ 344 (430)
+++.++.++ .+ ..+.+||+.+..-. .+............+.+ ++++++.|+.+ ..+.+||+.+.
T Consensus 200 -~~~i~v~GG-~~~~~~~~~~~~yd~~~~~W~--~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 200 -KDKIFAVGG-QNGLGGLDNVEYYDIKLNEWK--MVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp -TTEEEEECC-EETTEEBCCEEEEETTTTEEE--ECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred -CCEEEEEeC-CCCCCCCceEEEeeCCCCcEE--ECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 555555555 33 46889998876322 22111112222233333 56778888754 45888998876
Q ss_pred Ce
Q 014125 345 KW 346 (430)
Q Consensus 345 ~~ 346 (430)
+.
T Consensus 274 ~W 275 (306)
T 3ii7_A 274 KW 275 (306)
T ss_dssp EE
T ss_pred eE
Confidence 54
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=97.03 E-value=0.082 Score=47.79 Aligned_cols=107 Identities=16% Similarity=0.206 Sum_probs=60.9
Q ss_pred ceEEEEEcCCCCceEEEecCCCeEEEEEcCCceee--EEeec------cccCeEEEEEccC---CCEEEEEecC------
Q 014125 224 IMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELL--YVLHG------QEGGVTHVQFSRD---GNYLYTGGRK------ 286 (430)
Q Consensus 224 ~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~--~~~~~------~~~~i~~~~~~~~---~~~l~~~~~~------ 286 (430)
....|+|.| +++++++-...+.|++++..+++.. ..+.. ..+.+..|+|+|+ +..|+++...
T Consensus 28 ~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 28 KPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 467999999 4556665544457988886555432 22221 2356789999996 6666665522
Q ss_pred ------CCeEEEEeCCCCc-eE--EEEeec--ccCCccceEEEEEcCCCCEEEEEc
Q 014125 287 ------DPYILCWDLRKAV-QV--VYKLYR--SSEHTNQRILFDIEPSGRHLGTGG 331 (430)
Q Consensus 287 ------d~~i~i~d~~~~~-~~--~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~ 331 (430)
...|.-|++.... .. ...+.. ..........++|.|+|.+.++.+
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 2355556553321 10 111111 112223468899999998776654
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.18 Score=43.87 Aligned_cols=69 Identities=12% Similarity=0.064 Sum_probs=40.6
Q ss_pred cCeEEEEEcc-------CCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEc-cCCcE
Q 014125 266 GGVTHVQFSR-------DGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGG-QDGLV 336 (430)
Q Consensus 266 ~~i~~~~~~~-------~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i 336 (430)
.....++|.+ +|.++++.- ..+.|...++.... ..............+..+++.|+|.+.++.. .+|.|
T Consensus 271 ~ap~G~~~y~g~~fp~~~g~l~v~~~-~~~~v~~~~~~~~~-~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g~I 347 (353)
T 2g8s_A 271 PAVSGMAFYNSDKFPQWQQKLFIGAL-KDKDVIVMSVNGDK-VTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSGEL 347 (353)
T ss_dssp CCEEEEEEECCSSSGGGTTEEEEEET-TTTEEEEEEEETTE-EEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTEEE
T ss_pred cCcceeEEECCccCcccCCcEEEEEc-cCCEEEEEEeCCCe-EeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCCEE
Confidence 3567788863 455555544 78888888887542 2211111112235788999999998666433 34543
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.012 Score=50.61 Aligned_cols=117 Identities=13% Similarity=0.118 Sum_probs=72.4
Q ss_pred ceEEEecCCCeEEEEEcCCceeeEEeeccc-cCeEEEEE--ccCCCEEEEEe-cCCCeEEEEeCCCCceEEEEeecccCC
Q 014125 236 GMLAIGSYSQTSAIYREDNMELLYVLHGQE-GGVTHVQF--SRDGNYLYTGG-RKDPYILCWDLRKAVQVVYKLYRSSEH 311 (430)
Q Consensus 236 ~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~-~~i~~~~~--~~~~~~l~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~ 311 (430)
.++++++.||.|+-+|..+|+....+.... .++....- .+.+..++... ..||.|..++..++.............
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 378999999999999999999998887541 22222110 01122444442 279999999988764332111110011
Q ss_pred ccceEE---EEE-c----CCCCEEEEEccCCcEEEEEcCCCCeeccccc
Q 014125 312 TNQRIL---FDI-E----PSGRHLGTGGQDGLVHIYDLQTGKWISGFQA 352 (430)
Q Consensus 312 ~~~v~~---~~~-~----~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 352 (430)
..++.. ... . ..+..+++|+.+|++...|+.+|+.+..+..
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~ 139 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP 139 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 112211 000 0 0356788999999999999999999888763
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.21 Score=43.05 Aligned_cols=249 Identities=10% Similarity=0.071 Sum_probs=116.2
Q ss_pred CCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCc
Q 014125 60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC 139 (430)
Q Consensus 60 ~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (430)
-..-+.|+|.|||+++++--..|.|++++..++... .+. ....+..........++++|... .++.
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~-~v~----------~~~~v~~~g~~GllGia~~Pdf~---~~g~ 96 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKT-ELG----------EVPGVSPSGEGGLLGIALSPDYA---SDHM 96 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE-EEE----------ECTTCCCBTTBSEEEEEECTTHH---HHCE
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEe-eec----------ccCceeecCCCCceeeEeccccc---cCCE
Confidence 445789999999998887766899999876543211 000 00011122335677888854211 1233
Q ss_pred eEEEEe--CCCcEEEEeccCCc--------eeeeeecc-cccccccceEEEEECCCCcEEEE-Ec-------------CC
Q 014125 140 VFASTT--RDHPIHLWDATTGL--------LRCTYRAY-DAVDEITAAFSVAFNPTGTKIFA-GY-------------NK 194 (430)
Q Consensus 140 ~l~~~~--~dg~i~vwd~~~~~--------~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~-~~-------------d~ 194 (430)
+.++-+ .++.|.-|.+..+. ....+... ....| ....+.|.|+|.+.++ |. .+
T Consensus 97 lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H--~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G 174 (347)
T 3das_A 97 VYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIH--NGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGG 174 (347)
T ss_dssp EEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSC--CCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTT
T ss_pred EEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCc--cCccccCCCCCCEEEEECCCCCCccccCCCCCCC
Confidence 333322 34455556554421 11111111 11112 3457999999987774 32 23
Q ss_pred eEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEe-cCCCeEEEEEcCCce-----------------
Q 014125 195 SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIG-SYSQTSAIYREDNME----------------- 256 (430)
Q Consensus 195 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~v~~~d~~~~~----------------- 256 (430)
.|.-.+.+..-..-..+........++. ....++|+| .+.++++= +.++.-.|.-+..+.
T Consensus 175 ~IlRi~~dG~ip~~nPf~~~~i~a~G~R-Np~Gla~dp-~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~ 252 (347)
T 3das_A 175 KILRMTPDGEPAPGNPFPGSPVYSYGHR-NVQGLAWDD-KQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFH 252 (347)
T ss_dssp CEEEECTTSSBCTTCSSTTCCEEEBCCS-BCCEEEECT-TCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCC
T ss_pred EEEEEeCCCCccCCCCCCCCeEEeeCCC-CcceEEECC-CCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCcccc
Confidence 4444443321000000000000112332 245789998 45444432 223222222222111
Q ss_pred -eeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceE--EEEeecccCCccceEEEEEcCCCCEEEEE
Q 014125 257 -LLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQV--VYKLYRSSEHTNQRILFDIEPSGRHLGTG 330 (430)
Q Consensus 257 -~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 330 (430)
++..+..+......++|. +|..+...- ..+.|....+...... ...+. .+....+..++..|||.++++-
T Consensus 253 ~P~~~~~~~~~ap~G~~~~-~g~~~~~~l-~~~~l~~v~~~~~~~~~~~e~~l--~~~~gR~~dv~~~pDG~lyv~t 325 (347)
T 3das_A 253 DPVAQWSTDEASPSGIAYA-EGSVWMAGL-RGERLWRIPLKGTAAAADPQAFL--EGEYGRLRTVAPAGGDKLWLVT 325 (347)
T ss_dssp CCSEEECTTTCCEEEEEEE-TTEEEEEES-TTCSEEEEEEETTEESSCCEEES--TTTSSCEEEEEEEETTEEEEEE
T ss_pred CCcEecCCCCCCCcceEEE-cCceeeccc-cCCEEEEEEecCCceecceEEee--cCCCCCccEEEECCCCcEEEEE
Confidence 122222222345677775 344444444 5566666666544211 01111 2334678889999988765544
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.22 Score=42.51 Aligned_cols=185 Identities=13% Similarity=0.119 Sum_probs=90.4
Q ss_pred eEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEc----C-------CeEEEEEcCCCCCc
Q 014125 140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGY----N-------KSVRVFDVHRPGRD 207 (430)
Q Consensus 140 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~----d-------~~i~v~d~~~~~~~ 207 (430)
+++.|+ ..+..||..+++... ...... .. .........++.+++ +|. + ..+.+||..+. .
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~-~~~~~p--~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~--~ 78 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYC-ASLSSQ--VP-KNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDS--E 78 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEE-EECCCC--SC-SSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTT--E
T ss_pred EEEEcC--CceEEECCCCCeEec-CCCCCC--CC-ccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCC--e
Confidence 445555 569999999887543 221110 00 112222334566655 453 1 12677777653 2
Q ss_pred ccccccccCCCCCCCcceEEEEEcCCCCceEEEecCC--------CeEEEEEcCCceeeE--EeeccccCeEEEEEccCC
Q 014125 208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS--------QTSAIYREDNMELLY--VLHGQEGGVTHVQFSRDG 277 (430)
Q Consensus 208 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------g~v~~~d~~~~~~~~--~~~~~~~~i~~~~~~~~~ 277 (430)
+.....+..... ....+.+ ++.+++.|+.+ ..+.+||..+.+-.. .+.........+. -++
T Consensus 79 W~~~~~~p~~r~----~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~ 149 (315)
T 4asc_A 79 WLGMPPLPSPRC----LFGLGEA---LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMD 149 (315)
T ss_dssp EEECCCBSSCEE----SCEEEEE---TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETT
T ss_pred EEECCCCCcchh----ceeEEEE---CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECC
Confidence 222222111111 1122222 45677777742 458899988764322 1111111112222 355
Q ss_pred CEEEEEecC-C-----CeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCC-----cEEEEEcCCCCe
Q 014125 278 NYLYTGGRK-D-----PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDG-----LVHIYDLQTGKW 346 (430)
Q Consensus 278 ~~l~~~~~~-d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~ 346 (430)
+.++.++ . + ..+.+||..+..-. ..............+.+ ++++++.|+.++ .+.+||+.+.+.
T Consensus 150 ~iyv~GG-~~~~~~~~~~~~~yd~~~~~W~--~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 224 (315)
T 4asc_A 150 LVYVIGG-KGSDRKCLNKMCVYDPKKFEWK--ELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKW 224 (315)
T ss_dssp EEEEECC-BCTTSCBCCCEEEEETTTTEEE--ECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEE
T ss_pred EEEEEeC-CCCCCcccceEEEEeCCCCeEE--ECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeE
Confidence 5566665 4 2 46889998876322 22111111112222322 567777777654 488999887654
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=96.73 E-value=0.22 Score=42.25 Aligned_cols=189 Identities=15% Similarity=0.195 Sum_probs=93.7
Q ss_pred CCceEEEEeC----C-----CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-Ec-----CCeEEEEEc
Q 014125 137 TSCVFASTTR----D-----HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GY-----NKSVRVFDV 201 (430)
Q Consensus 137 ~~~~l~~~~~----d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~-----d~~i~v~d~ 201 (430)
++.+++.|+. + ..+.+||+.+.+....-..... ......+.+ ++++++. |. -..+.+||+
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~---r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~ 144 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVP---RNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEP 144 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSC---CBTCEEEEE--TTEEEEECCEETTEECCCEEEEET
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcC---ccccEEEEE--CCEEEEEcCCCCCcccccEEEECC
Confidence 4556666665 2 4688899888764433221111 011122222 5555554 32 246888888
Q ss_pred CCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCC-----CeEEEEEcCCceeeEE--eeccccCeEEEEEc
Q 014125 202 HRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS-----QTSAIYREDNMELLYV--LHGQEGGVTHVQFS 274 (430)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~v~~~d~~~~~~~~~--~~~~~~~i~~~~~~ 274 (430)
.+. .+.....+..... ....+.+ ++.+++.|+.+ ..+.+||+.+.+-... +.........+.+
T Consensus 145 ~~~--~W~~~~~~p~~r~----~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~- 214 (308)
T 1zgk_A 145 ERD--EWHLVAPMLTRRI----GVGVAVL---NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL- 214 (308)
T ss_dssp TTT--EEEECCCCSSCCB----SCEEEEE---TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-
T ss_pred CCC--eEeECCCCCcccc----ceEEEEE---CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-
Confidence 653 2222222111111 1222333 45677777754 4588999877643221 1111112222333
Q ss_pred cCCCEEEEEecCC-----CeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccC-----CcEEEEEcCCC
Q 014125 275 RDGNYLYTGGRKD-----PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQD-----GLVHIYDLQTG 344 (430)
Q Consensus 275 ~~~~~l~~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~ 344 (430)
+++.++.++ .+ ..+.+||+.+..-. .+............+.+ ++++++.|+.+ ..+.+||+.+.
T Consensus 215 -~~~iyv~GG-~~~~~~~~~v~~yd~~~~~W~--~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 215 -HNCIYAAGG-YDGQDQLNSVERYDVETETWT--FVAPMKHRRSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp -TTEEEEECC-BCSSSBCCCEEEEETTTTEEE--ECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred -CCEEEEEeC-CCCCCccceEEEEeCCCCcEE--ECCCCCCCccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 556666665 43 56899999876322 22111111112222222 56777777754 34788888765
Q ss_pred Ce
Q 014125 345 KW 346 (430)
Q Consensus 345 ~~ 346 (430)
+.
T Consensus 289 ~W 290 (308)
T 1zgk_A 289 TW 290 (308)
T ss_dssp EE
T ss_pred EE
Confidence 44
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.1 Score=41.31 Aligned_cols=107 Identities=10% Similarity=0.047 Sum_probs=61.6
Q ss_pred ceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCee--------eeeeeccccCc
Q 014125 62 FLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESV--------YDFCWFPHMSA 133 (430)
Q Consensus 62 ~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--------~~~~~~~~~~~ 133 (430)
.++.++|+|+|.+.+. .+|.+.-.+..+.... ........| .++.|
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~------------------~W~~s~t~IG~~Gw~~F~a~~f------ 95 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDND------------------NWMGRAKKIGNGGWNQFQFLFF------ 95 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTC------------------CHHHHCEEEECSCGGGCSEEEE------
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcc------------------cccccccEecccccccceEEEE------
Confidence 6789999999986666 6676655554332110 000011222 44455
Q ss_pred cCCCCceEEEEeCCCcEEEEeccCCceeeeeecccc--cccccceEEEEECCCCcEEEEEcCCeEEE
Q 014125 134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDA--VDEITAAFSVAFNPTGTKIFAGYNKSVRV 198 (430)
Q Consensus 134 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~d~~i~v 198 (430)
.++|.+.++ .||.|.-++..+.....-+..... ...-..+..+.+.|+|.+.++. |+.++-
T Consensus 96 -D~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~lyr 158 (236)
T 1tl2_A 96 -DPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQFYK 158 (236)
T ss_dssp -CTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTEEEE
T ss_pred -CCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-CCcEEe
Confidence 678887777 569888887644221111000000 0001267899999999999988 888543
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.087 Score=45.95 Aligned_cols=21 Identities=10% Similarity=0.079 Sum_probs=13.5
Q ss_pred CCceEEEEeCC-CcEEEEeccC
Q 014125 137 TSCVFASTTRD-HPIHLWDATT 157 (430)
Q Consensus 137 ~~~~l~~~~~d-g~i~vwd~~~ 157 (430)
++.+++.|+.+ ..+.++|+.+
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~ 40 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQA 40 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTS
T ss_pred CCEEEEEeCcCCCeEEEEcccc
Confidence 45566666543 4688889864
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.28 Score=41.80 Aligned_cols=190 Identities=13% Similarity=0.119 Sum_probs=92.8
Q ss_pred CCceEEEEeC-----C------CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcC--------CeE
Q 014125 137 TSCVFASTTR-----D------HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYN--------KSV 196 (430)
Q Consensus 137 ~~~~l~~~~~-----d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d--------~~i 196 (430)
++.+++.|+. . ..+.+||+.+++....-..... . .-.+++.. ++.+++ +|.+ ..+
T Consensus 45 ~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-r---~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~ 119 (315)
T 4asc_A 45 ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSP-R---CLFGLGEA-LNSIYVVGGREIKDGERCLDSV 119 (315)
T ss_dssp TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSC-E---ESCEEEEE-TTEEEEECCEESSTTCCBCCCE
T ss_pred CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcc-h---hceeEEEE-CCEEEEEeCCcCCCCCcccceE
Confidence 5667777773 1 1277888887765332211111 0 11122222 455555 3321 458
Q ss_pred EEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecC-C-----CeEEEEEcCCceeeEE--eeccccCe
Q 014125 197 RVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY-S-----QTSAIYREDNMELLYV--LHGQEGGV 268 (430)
Q Consensus 197 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d-----g~v~~~d~~~~~~~~~--~~~~~~~i 268 (430)
.+||..+. .+.....+..... ....+.+ ++.+++.|+. + ..+.+||..+.+-... +.......
T Consensus 120 ~~~d~~~~--~W~~~~~~p~~r~----~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~ 190 (315)
T 4asc_A 120 MCYDRLSF--KWGESDPLPYVVY----GHTVLSH---MDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLF 190 (315)
T ss_dssp EEEETTTT--EEEECCCCSSCCB----SCEEEEE---TTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSC
T ss_pred EEECCCCC--cEeECCCCCCccc----ceeEEEE---CCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhce
Confidence 88888753 2222222211111 1222222 5567888776 2 4689999887643221 11111112
Q ss_pred EEEEEccCCCEEEEEecCCC-----eEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCC---------
Q 014125 269 THVQFSRDGNYLYTGGRKDP-----YILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDG--------- 334 (430)
Q Consensus 269 ~~~~~~~~~~~l~~~~~~d~-----~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--------- 334 (430)
.++.+ +++.++.++ .++ .+.+||+.+..-. .+............+.+ ++++++.|+.++
T Consensus 191 ~~~~~--~~~iyv~GG-~~~~~~~~~~~~yd~~~~~W~--~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~ 263 (315)
T 4asc_A 191 GATVH--DGRIIVAAG-VTDTGLTSSAEVYSITDNKWA--PFEAFPQERSSLSLVSL--VGTLYAIGGFATLETESGELV 263 (315)
T ss_dssp EEEEE--TTEEEEEEE-ECSSSEEEEEEEEETTTTEEE--EECCCSSCCBSCEEEEE--TTEEEEEEEEEEEECTTSCEE
T ss_pred EEEEE--CCEEEEEec-cCCCCccceEEEEECCCCeEE--ECCCCCCcccceeEEEE--CCEEEEECCccccCcCCcccc
Confidence 22222 566666776 443 5888998876322 22211111222222333 467777776532
Q ss_pred -----cEEEEEcCCCCee
Q 014125 335 -----LVHIYDLQTGKWI 347 (430)
Q Consensus 335 -----~i~vwd~~~~~~~ 347 (430)
.+.+||+.+.+..
T Consensus 264 ~~~~~~v~~yd~~~~~W~ 281 (315)
T 4asc_A 264 PTELNDIWRYNEEEKKWE 281 (315)
T ss_dssp EEEEEEEEEEETTTTEEE
T ss_pred ccccCcEEEecCCCChhh
Confidence 3778888776543
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.017 Score=49.67 Aligned_cols=199 Identities=11% Similarity=0.002 Sum_probs=102.5
Q ss_pred CceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEE---ECCCCcEEEE--EcCCeEEEEEcCCCCCcccccc
Q 014125 138 SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVA---FNPTGTKIFA--GYNKSVRVFDVHRPGRDFEKYS 212 (430)
Q Consensus 138 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~l~~--~~d~~i~v~d~~~~~~~~~~~~ 212 (430)
+.+++.++.||.|.-+|..+|+....++.... .++.... ...++..++. ..||.|..++...+...+..
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~----~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~-- 83 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENF----QPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPL-- 83 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGS----CCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEE--
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCcc----CCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeee--
Confidence 34789999999999999999999988876410 0111110 0012334443 36888888887653211110
Q ss_pred cccCCCCCCCcceEE---EEE-cC---CCCceEEEecCCCeEEEEEcCCceeeEEeecccc-C------eEEEEEc----
Q 014125 213 TLKGNKEGQAGIMSA---IAF-SP---THTGMLAIGSYSQTSAIYREDNMELLYVLHGQEG-G------VTHVQFS---- 274 (430)
Q Consensus 213 ~~~~~~~~~~~~v~~---~~~-~~---~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~-~------i~~~~~~---- 274 (430)
...... ...++.. ... .+ .....+++|+.+|.+...|+++|+.+..+..... . ..|....
T Consensus 84 ~~~~lv--~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~ 161 (339)
T 2be1_A 84 SIRQLV--STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKL 161 (339)
T ss_dssp EHHHHH--TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC-----------------
T ss_pred ccccce--eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCccccccccccccccccccc
Confidence 000000 0111221 000 00 0234789999999999999999999988863211 0 0111111
Q ss_pred -cCCCEEEEEecCCCeEEEEeCCCCceEEEEee---cccCCccceE-EEEEcCCCCEEEEEccCCcEEEEEcCCCCeec
Q 014125 275 -RDGNYLYTGGRKDPYILCWDLRKAVQVVYKLY---RSSEHTNQRI-LFDIEPSGRHLGTGGQDGLVHIYDLQTGKWIS 348 (430)
Q Consensus 275 -~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 348 (430)
-.+..++.+. .+..+.+.+ +++. ...... ........+. .-..+.++.+ +.++.||.|.-+|..+|+.+.
T Consensus 162 d~~~~~v~ig~-~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 162 QECENMIVIGK-TIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp ---CCEEEEEE-EEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred ccCCCeEEEec-ceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 1234566665 666666666 3331 110000 0000000000 0001234666 447889999999999888765
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=96.26 E-value=0.56 Score=41.44 Aligned_cols=241 Identities=13% Similarity=0.136 Sum_probs=146.1
Q ss_pred EEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEE
Q 014125 65 GIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFAST 144 (430)
Q Consensus 65 ~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 144 (430)
+.-.+|..+.||-=. ..++.|+|+++...... ..-.+.|.-=.|. + .+.|+-.
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks------------------~~~~e~VvfWkWi------s--~~~l~lV 122 (494)
T 1bpo_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKA------------------HTMTDDVTFWKWI------S--LNTVALV 122 (494)
T ss_dssp EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEE------------------EECSSCCCEEEEE------E--TTEEEEE
T ss_pred eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcc------------------eecCCCceEEEec------C--CCeEEEE
Confidence 344577777666554 56899999986532211 1112355555663 2 2234444
Q ss_pred eCCCcEEEEeccC-CceeeeeecccccccccceEEEEECCCCcEEE-EE---c----CCeEEEEEcCCCCCccccccccc
Q 014125 145 TRDHPIHLWDATT-GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG---Y----NKSVRVFDVHRPGRDFEKYSTLK 215 (430)
Q Consensus 145 ~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~---~----d~~i~v~d~~~~~~~~~~~~~~~ 215 (430)
+ +..|+-|++.. ..+...+..+.... ...|..-..+++.++++ +| . .|.+.+|..+.. ..
T Consensus 123 T-~taVyHWsi~~~s~P~kvFdR~~~L~-~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~---------~s 191 (494)
T 1bpo_A 123 T-DNAVYHWSMEGESQPVKMFDRHSSLA-GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK---------VS 191 (494)
T ss_dssp C-SSEEEEEESSSSCCCEEEEECCGGGT-TCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC---------CE
T ss_pred c-CCeeEEecccCCCCchhheecchhcc-cceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc---------cc
Confidence 3 45599999974 45667777766554 35788888999999987 44 2 367889988753 22
Q ss_pred CCCCCCCcceEEEEEcCC--CCceEEEecC---CCeEEEEEcCCc---ee-----eEE-ee---ccccCeEEEEEccCCC
Q 014125 216 GNKEGQAGIMSAIAFSPT--HTGMLAIGSY---SQTSAIYREDNM---EL-----LYV-LH---GQEGGVTHVQFSRDGN 278 (430)
Q Consensus 216 ~~~~~~~~~v~~~~~~~~--~~~~l~~~~~---dg~v~~~d~~~~---~~-----~~~-~~---~~~~~i~~~~~~~~~~ 278 (430)
...++|......+.+..+ ...+++.+.. .+.+++.++... .. ... +- .-.+-..++..++...
T Consensus 192 Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kyg 271 (494)
T 1bpo_A 192 QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD 271 (494)
T ss_dssp EEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTT
T ss_pred chheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCC
Confidence 234666655555544321 1224444433 378999887532 11 111 11 1123456788888888
Q ss_pred EEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeec
Q 014125 279 YLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWIS 348 (430)
Q Consensus 279 ~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 348 (430)
.++... .-|.|++||+.++...... .-....|...+.+....-++.....|.|.--.++....+.
T Consensus 272 viyviT-K~G~i~lyDleTgt~i~~n----rIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~ivp 336 (494)
T 1bpo_A 272 VVFLIT-KYGYIHLYDLETGTCIYMN----RISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIP 336 (494)
T ss_dssp EEEEEE-TTSEEEEEETTTCCEEEEE----ECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTTHHH
T ss_pred EEEEEe-cCceEEEEecccceeeeee----cccCCceEEecccCCCCcEEEEccCceEEEEEEccccchh
Confidence 888888 8999999999999655322 2334445444444444455666688888777777665543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=96.02 E-value=0.77 Score=47.11 Aligned_cols=236 Identities=13% Similarity=0.131 Sum_probs=127.7
Q ss_pred ECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCC
Q 014125 68 WSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRD 147 (430)
Q Consensus 68 ~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d 147 (430)
.+|..+.||-=. ..++.|+|+++........ -..+|.-=.|. +++ .|+-.+ +
T Consensus 73 MnP~~~iiALra-g~~lQiFnl~~k~klks~~------------------~~e~VvfWkWi------s~~--~l~lVT-~ 124 (1630)
T 1xi4_A 73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHT------------------MTDDVTFWKWI------SLN--TVALVT-D 124 (1630)
T ss_pred cCCCcceEEEec-CCeEEEeehHHhhhhcccc------------------cCCCceEEEec------CCC--eeEEEc-C
Confidence 466666666544 5689999987653322211 12356666673 222 333333 3
Q ss_pred CcEEEEeccC-CceeeeeecccccccccceEEEEECCCCcEEE-EE-------cCCeEEEEEcCCCCCcccccccccCCC
Q 014125 148 HPIHLWDATT-GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-------YNKSVRVFDVHRPGRDFEKYSTLKGNK 218 (430)
Q Consensus 148 g~i~vwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-------~d~~i~v~d~~~~~~~~~~~~~~~~~~ 218 (430)
..|.-|++.. ..+...+..+.... ...|..-..+++.++++ +| -.|.+.+|..+... ....
T Consensus 125 ~aVyHW~~~~~s~P~k~fdR~~~L~-~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~---------sQ~i 194 (1630)
T 1xi4_A 125 NAVYHWSMEGESQPVKMFDRHSSLA-GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV---------SQPI 194 (1630)
T ss_pred CeEEEeccCCCCccHHHHhcchhcc-cCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc---------chhh
Confidence 4599999964 34555555554333 24788888899999887 44 23788888887532 2223
Q ss_pred CCCCcceEEEEEc--CCCCceEEEecC---CCeEEEEEcCCc---eee------EEeec---cccCeEEEEEccCCCEEE
Q 014125 219 EGQAGIMSAIAFS--PTHTGMLAIGSY---SQTSAIYREDNM---ELL------YVLHG---QEGGVTHVQFSRDGNYLY 281 (430)
Q Consensus 219 ~~~~~~v~~~~~~--~~~~~~l~~~~~---dg~v~~~d~~~~---~~~------~~~~~---~~~~i~~~~~~~~~~~l~ 281 (430)
.||......+... +....+++.+.. .+.++|.++... ... ..+-. -..-..++..++....++
T Consensus 195 egha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy 274 (1630)
T 1xi4_A 195 EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVF 274 (1630)
T ss_pred hHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEE
Confidence 4444433333332 111223332222 368888887542 111 01111 122345677788777888
Q ss_pred EEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCe
Q 014125 282 TGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKW 346 (430)
Q Consensus 282 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 346 (430)
..+ .-|.|.+||+.++.... ...-....|...+-+....-++.....|.|.--.++....
T Consensus 275 ~it-k~G~~~~~d~~t~~~i~----~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~i 334 (1630)
T 1xi4_A 275 LIT-KYGYIHLYDLETGTCIY----MNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENI 334 (1630)
T ss_pred EEe-cCceEEEEecccchhhh----hccccCCceEEeccCCCCCceEEEcCCceEEEEEEccchh
Confidence 888 89999999999985432 1122233333333333222344444666666555554443
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=95.63 E-value=0.9 Score=38.64 Aligned_cols=187 Identities=12% Similarity=0.129 Sum_probs=88.2
Q ss_pred eEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEc-----CC-------eEEEEEcCCCCCc
Q 014125 140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGY-----NK-------SVRVFDVHRPGRD 207 (430)
Q Consensus 140 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----d~-------~i~v~d~~~~~~~ 207 (430)
+++.|+. .+..||..+++... ........ .........++.+++.|. ++ .+.+||..+. .
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~-~~~~~~~~---r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~--~ 89 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYL-TALAEQIP---RNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSS--E 89 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEE-EEECTTSC---SSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTT--E
T ss_pred hhhcccc--ceEEECCCCCceec-ccCCccCC---ccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCC--c
Confidence 4444543 38899998887654 22111000 111222334566666442 11 1667776542 2
Q ss_pred ccccccccCCCCCCCcceEEEEEcCCCCceEEEecCC-------CeEEEEEcCCceeeEE--eeccccCeEEEEEccCCC
Q 014125 208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS-------QTSAIYREDNMELLYV--LHGQEGGVTHVQFSRDGN 278 (430)
Q Consensus 208 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-------g~v~~~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~ 278 (430)
+.....+..... ....+.+ ++.+++.|+.+ ..+.+||..+.+-... +......-..+. .+++
T Consensus 90 W~~~~~~p~~r~----~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~ 160 (318)
T 2woz_A 90 WVGLPPLPSARC----LFGLGEV---DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS--HNGM 160 (318)
T ss_dssp EEECSCBSSCBC----SCEEEEE---TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE--ETTE
T ss_pred EEECCCCCcccc----ccceEEE---CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE--ECCE
Confidence 222222211111 1222233 45677777754 3588899887653322 111111112222 3565
Q ss_pred EEEEEecC-----CCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccC-----CcEEEEEcCCCCee
Q 014125 279 YLYTGGRK-----DPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQD-----GLVHIYDLQTGKWI 347 (430)
Q Consensus 279 ~l~~~~~~-----d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~ 347 (430)
.++.|+.. -..+.+||..+..-. ..............+.+ ++++++.|+.+ ..+.+||+.+.+..
T Consensus 161 iyv~GG~~~~~~~~~~~~~yd~~~~~W~--~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 235 (318)
T 2woz_A 161 IYCLGGKTDDKKCTNRVFIYNPKKGDWK--DLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKWE 235 (318)
T ss_dssp EEEECCEESSSCBCCCEEEEETTTTEEE--EECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCEE
T ss_pred EEEEcCCCCCCCccceEEEEcCCCCEEE--ECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeEE
Confidence 55555521 235899999876422 22111111111222222 46777777654 34778998876543
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=95.57 E-value=0.92 Score=38.34 Aligned_cols=127 Identities=7% Similarity=0.008 Sum_probs=71.4
Q ss_pred EEcCCCCceEEEe---cCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEe
Q 014125 229 AFSPTHTGMLAIG---SYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKL 305 (430)
Q Consensus 229 ~~~~~~~~~l~~~---~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~ 305 (430)
.|++++..++.+- .....|+..++..... ..+..+.. .+|+|+++.|+-.+.....|...++...... .+
T Consensus 110 ~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~-~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~--~l 182 (302)
T 3s25_A 110 YASLIGNYIYYLHYDTQTATSLYRIRIDGEEK-KKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEA--LF 182 (302)
T ss_dssp EEEEETTEEEEEEESSSSCEEEEEEETTSCCC-EEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEE--EE
T ss_pred EEEEeCCEEEEEeecCCCCceEEEEECCCCCe-EEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEE--EE
Confidence 5666455444444 2445666667764333 33333322 4578899999877734678888888766433 22
Q ss_pred ecccCCccceEEEEEcCCCCEEEEEccC--CcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEee
Q 014125 306 YRSSEHTNQRILFDIEPSGRHLGTGGQD--GLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSS 373 (430)
Q Consensus 306 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 373 (430)
.. + ... ..++|++.+|+-...+ ..|..-+++.... ..+.. ..+ ..|+|++.+|.-++
T Consensus 183 ~~--~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~-~~Lt~--~~~--~~~~~~g~~Iy~~~ 241 (302)
T 3s25_A 183 YD--C---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNP-VVLTE--ANI--EHYNVYGSLIFYQR 241 (302)
T ss_dssp EC--S---CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCC-EECSC--SCE--EEEEEETTEEEEEE
T ss_pred eC--C---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCe-EEEeC--CCc--ceEEECCCEEEEEE
Confidence 21 1 112 2356889888766543 3577777765442 23321 222 23677777776553
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=95.48 E-value=1.5 Score=42.12 Aligned_cols=201 Identities=11% Similarity=0.100 Sum_probs=100.2
Q ss_pred CCceEEEEeCC----CcEEEEeccCCceeeee-ecc-cccccccceEEEEECC-CCcEEE-EEcC------CeEEEEEcC
Q 014125 137 TSCVFASTTRD----HPIHLWDATTGLLRCTY-RAY-DAVDEITAAFSVAFNP-TGTKIF-AGYN------KSVRVFDVH 202 (430)
Q Consensus 137 ~~~~l~~~~~d----g~i~vwd~~~~~~~~~~-~~~-~~~~~~~~v~~~~~~~-~~~~l~-~~~d------~~i~v~d~~ 202 (430)
++.+++.|+.+ ..+.+||+.+++....- ... ........-.+++..+ ++.+++ +|.+ +.+.+||..
T Consensus 397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~ 476 (695)
T 2zwa_A 397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMK 476 (695)
T ss_dssp SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETT
T ss_pred CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCC
Confidence 45667777653 46888998887655433 210 0000001112333333 566665 4432 357888876
Q ss_pred CCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCC--eEEEEEcCCceeeEEe-----eccccCeEEEEEcc
Q 014125 203 RPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ--TSAIYREDNMELLYVL-----HGQEGGVTHVQFSR 275 (430)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~v~~~d~~~~~~~~~~-----~~~~~~i~~~~~~~ 275 (430)
+. .+.....+...... . +++... ++.+++.|+.++ .+.+||..+..-...- ........++.+..
T Consensus 477 t~--~W~~~~~~p~~R~~----h-~~~~~~-~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~ 548 (695)
T 2zwa_A 477 TR--EWSMIKSLSHTRFR----H-SACSLP-DGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDP 548 (695)
T ss_dssp TT--EEEECCCCSBCCBS----C-EEEECT-TSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEET
T ss_pred CC--cEEECCCCCCCccc----c-eEEEEc-CCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeC
Confidence 53 22222211111111 2 222222 566888887655 6999998876533221 11112223355555
Q ss_pred C-CCEEEEEecC--C-----CeEEEEeCCCCce----EEEEeecc-cCCccceEEEEEcCCCCEEEEEccC--------C
Q 014125 276 D-GNYLYTGGRK--D-----PYILCWDLRKAVQ----VVYKLYRS-SEHTNQRILFDIEPSGRHLGTGGQD--------G 334 (430)
Q Consensus 276 ~-~~~l~~~~~~--d-----~~i~i~d~~~~~~----~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d--------g 334 (430)
+ ++.++.|| . + ..+.+||+.+..- ....+... .........+ ...++++++.|+.+ .
T Consensus 549 ~~~~iyv~GG-~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~-~~~~~~iyv~GG~~~~~~~~~~~ 626 (695)
T 2zwa_A 549 VSKQGIILGG-GFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIK-YITPRKLLIVGGTSPSGLFDRTN 626 (695)
T ss_dssp TTTEEEEECC-BCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEE-EEETTEEEEECCBCSSCCCCTTT
T ss_pred CCCEEEEECC-cCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEE-EeCCCEEEEECCccCCCCCCCCC
Confidence 5 55555565 4 2 4688999987751 01111110 1111112222 23336777777743 4
Q ss_pred cEEEEEcCCCCee
Q 014125 335 LVHIYDLQTGKWI 347 (430)
Q Consensus 335 ~i~vwd~~~~~~~ 347 (430)
.|.+||+.+.+..
T Consensus 627 ~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 627 SIISLDPLSETLT 639 (695)
T ss_dssp SEEEEETTTTEEE
T ss_pred eEEEEECCCCeEE
Confidence 5999999877653
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=95.47 E-value=0.11 Score=47.19 Aligned_cols=108 Identities=12% Similarity=0.043 Sum_probs=70.4
Q ss_pred cCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCce-----E---EEEeecccCCccceEEEEEcCCCCEEEEEccCCcEE
Q 014125 266 GGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQ-----V---VYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVH 337 (430)
Q Consensus 266 ~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~-----~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 337 (430)
.....+.++|||+++++++.-+.++.++|++.... . .........-.......+|+++|....+---|..|.
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvv 402 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVV 402 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEE
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEE
Confidence 34567899999999999998899999999874211 0 000001112345567899999996666777899999
Q ss_pred EEEcCCC----------CeecccccccCCeeEEE------EcCCCcEEEEeeC
Q 014125 338 IYDLQTG----------KWISGFQAAADTVNGFS------FHPFLPMAASSSG 374 (430)
Q Consensus 338 vwd~~~~----------~~~~~~~~~~~~v~~~~------~~~~~~~l~s~~~ 374 (430)
-|++... ..+..+..|-.+ -.+. -.|+|++|++...
T Consensus 403 kWni~~a~~~~~g~~~~~v~~k~dv~Yqp-GH~~~~~get~~~dGk~lv~lnK 454 (638)
T 3sbq_A 403 KWNMEEAVRAYKGEKVNYIKQKLDVHYQP-GHLHASLCETNEADGKWLVALSK 454 (638)
T ss_dssp EEEHHHHHHHHTTCCCCCEEEEEECSSCE-EEEEETTTTSTTCCSCEEEEEES
T ss_pred EEeccHHHHHhcCccCCeeeeccccccCC-cccccCCCccCCCCccEEEEecc
Confidence 9998742 234444433322 2222 2578899888753
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=95.45 E-value=1 Score=38.07 Aligned_cols=200 Identities=6% Similarity=-0.018 Sum_probs=106.3
Q ss_pred CCCCceEEEEeCC--------------CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE--cCCeEE
Q 014125 135 DPTSCVFASTTRD--------------HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG--YNKSVR 197 (430)
Q Consensus 135 ~~~~~~l~~~~~d--------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~--~d~~i~ 197 (430)
++++..|+-+... ..|+..++..++....... .+..|++++..|+ +. .++.-.
T Consensus 61 ~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~----------~~~~~s~~g~~Iy~~~~~~~~~~~ 130 (302)
T 3s25_A 61 NADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPD----------PCIYASLIGNYIYYLHYDTQTATS 130 (302)
T ss_dssp EECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEECS----------CEEEEEEETTEEEEEEESSSSCEE
T ss_pred EEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecC----------CccEEEEeCCEEEEEeecCCCCce
Confidence 4466666655432 4577777766653332211 1336777888888 44 244444
Q ss_pred EEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCC
Q 014125 198 VFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDG 277 (430)
Q Consensus 198 v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 277 (430)
||.+...+...+.+ .. +. + ..++|++..++.+......|.+.++..+.....+. +... ..+.|++
T Consensus 131 Iy~~~~dGs~~~~l---t~----~~--~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g 195 (302)
T 3s25_A 131 LYRIRIDGEEKKKI---KN----HY--L--FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD---CNCY-KPVVLDD 195 (302)
T ss_dssp EEEEETTSCCCEEE---ES----SC--C--CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC---SCEE-EEEEEET
T ss_pred EEEEECCCCCeEEE---eC----CC--c--eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC---CCcc-ceeeecC
Confidence 55444333222211 11 11 1 34566566666666657788888887665443333 2222 3456999
Q ss_pred CEEEEEecCC-CeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEc--cCCcEEEEEcCCCCeeccccccc
Q 014125 278 NYLYTGGRKD-PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGG--QDGLVHIYDLQTGKWISGFQAAA 354 (430)
Q Consensus 278 ~~l~~~~~~d-~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~ 354 (430)
.+|+-....+ ..|..-++...... .+. ...+ ..|+|++.+|.-++ ..+.|..-+++... ...+...
T Consensus 196 ~~iy~t~~~~~~~I~~~~ldG~~~~--~Lt-----~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~-r~~l~~~- 264 (302)
T 3s25_A 196 TNVYYMDVNRDNAIVHVNINNPNPV--VLT-----EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTG-FKELAKG- 264 (302)
T ss_dssp TEEEEEEGGGTTEEEEECSSSCCCE--ECS-----CSCE--EEEEEETTEEEEEECSSSCEEEEEETTSCC-CEEEEES-
T ss_pred CEEEEEEcCCCcEEEEEECCCCCeE--EEe-----CCCc--ceEEECCCEEEEEECCCCcEEEEEECCCCc-cEEeeCC-
Confidence 9998876333 36666677655432 221 1122 34788888887653 24567777776433 2223211
Q ss_pred CCeeEEEEcCCCcEEEEee
Q 014125 355 DTVNGFSFHPFLPMAASSS 373 (430)
Q Consensus 355 ~~v~~~~~~~~~~~l~s~~ 373 (430)
.+. .+++.+.+|.-..
T Consensus 265 -~~~--~i~i~~d~Iy~td 280 (302)
T 3s25_A 265 -EFC--NINVTSQYVYFTD 280 (302)
T ss_dssp -CEE--EEEECSSEEEEEE
T ss_pred -ccc--eEEEeCCEEEEEE
Confidence 233 3344555555544
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=95.45 E-value=2.1 Score=41.65 Aligned_cols=272 Identities=13% Similarity=0.079 Sum_probs=141.5
Q ss_pred CceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCce
Q 014125 61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV 140 (430)
Q Consensus 61 ~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (430)
..|.++....+|.+.+ |+..| +..++..++.... ..... . .......|.++.. ..++..
T Consensus 146 ~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~~~~~-~~~~~------~-----~~~~~~~i~~i~~-------d~~~~~ 204 (758)
T 3ott_A 146 NTIYSIIRTKDNQIYV-GTYNG-LCRYIPSNGKFEG-IPLPV------H-----SSQSNLFVNSLLE-------DTTRQC 204 (758)
T ss_dssp SCEEEEEECTTCCEEE-EETTE-EEEEETTTTEEEE-ECCCC------C-----TTCSSCCEEEEEE-------ETTTTE
T ss_pred CeEEEEEEcCCCCEEE-EeCCC-HhhCccCCCceEE-ecCCC------c-----cccccceeEEEEE-------ECCCCE
Confidence 4578888877776555 44444 6677765442210 00000 0 0001124666655 334554
Q ss_pred EEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccc-cCCCC
Q 014125 141 FASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTL-KGNKE 219 (430)
Q Consensus 141 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~-~~~~~ 219 (430)
|..|+.. -+..++..+++......... ..|.++...++|.+.+++ ++-+.+++..... ...+... .....
T Consensus 205 lWigt~~-Gl~~~~~~~~~~~~~~~l~~-----~~i~~i~~d~~g~lWigT-~~Gl~~~~~~~~~--~~~~~~~~~~~~~ 275 (758)
T 3ott_A 205 VWIGTEG-YLFQYFPSTGQIKQTEAFHN-----NSIKSLALDGNGDLLAGT-DNGLYVYHNDTTP--LQHIIHDSRNIQS 275 (758)
T ss_dssp EEEEEEE-EEEEEETTTTEEEEEEEEEE-----EEEEEEEECTTCCEEEEE-TTEEEEECCTTSC--CEEECCCTTCTTS
T ss_pred EEEEECC-CCeEEcCCCCeEEeccCCCC-----CeEEEEEEcCCCCEEEEe-CCceeEEecCCCc--EEEEEcCCCCcCc
Confidence 5555544 48888887765432211111 268888888888888766 4567788765421 1111100 00011
Q ss_pred CCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEee-------ccccCeEEEEEccCCCEEEEEecCCCeEEE
Q 014125 220 GQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH-------GQEGGVTHVQFSRDGNYLYTGGRKDPYILC 292 (430)
Q Consensus 220 ~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i 292 (430)
-....|.++....+ + .|-+|+..| +.++.... . ...+. .....|.++.-..+|...+ ++ .+| +..
T Consensus 276 l~~~~i~~i~~D~~-g-~lWiGT~~G-l~~~~~~~-~-~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWi-Gt-~~G-l~~ 347 (758)
T 3ott_A 276 LTNNIIWNIFADQE-H-NIWLGTDYG-ISLSRYNS-A-LQFIPISQITGTGDGNQFYSLFRDSKGFYWF-GG-ANG-LIR 347 (758)
T ss_dssp CSCSCEEEEEECTT-C-CEEEEESSS-EEEECCCC---CEEEEHHHHSCSCCCCBEEEEEECTTCCEEE-EE-TTE-EEE
T ss_pred CCcCeEEEEEEcCC-C-CEEEEeCCc-ccccccCC-c-eeEEecccCCCCCCCceEEEEEEcCCCCEEE-ee-CCc-cee
Confidence 12345888887763 3 355555566 54443321 1 11111 0124588888888887544 45 455 556
Q ss_pred EeCCCCceEEEEeecc-----cCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccc-c-----ccCCeeEEE
Q 014125 293 WDLRKAVQVVYKLYRS-----SEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQ-A-----AADTVNGFS 361 (430)
Q Consensus 293 ~d~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~-----~~~~v~~~~ 361 (430)
++..+........... .-....|.++.-..+|++.+ |+. +-+..+|..+++...... . ....|.++.
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWi-gt~-~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~ 425 (758)
T 3ott_A 348 FTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWI-ATD-GSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIF 425 (758)
T ss_dssp ESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEE-EET-TEEEEEETTTTEEEEEEEECCC--CBSSSEEEEE
T ss_pred ecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEE-EeC-CcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEE
Confidence 6655421110011110 11234688888888877544 443 469999988765432110 0 123578888
Q ss_pred EcCCCcEEEEe
Q 014125 362 FHPFLPMAASS 372 (430)
Q Consensus 362 ~~~~~~~l~s~ 372 (430)
-.+++.+.+..
T Consensus 426 ~d~~g~lWigT 436 (758)
T 3ott_A 426 EDTAGQLWIST 436 (758)
T ss_dssp ECTTSEEEEEE
T ss_pred EcCCCCEEEEE
Confidence 88877766543
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=95.38 E-value=1.1 Score=38.09 Aligned_cols=191 Identities=14% Similarity=0.180 Sum_probs=90.9
Q ss_pred CCceEEEEeC----CC-------cEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcC-------CeEE
Q 014125 137 TSCVFASTTR----DH-------PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYN-------KSVR 197 (430)
Q Consensus 137 ~~~~l~~~~~----dg-------~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d-------~~i~ 197 (430)
++.+++.|+. ++ .+.+||..+++....-..... . .-.+++.. ++.+++ +|.+ ..+.
T Consensus 56 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-r---~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~ 130 (318)
T 2woz_A 56 QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSA-R---CLFGLGEV-DDKIYVVAGKDLQTEASLDSVL 130 (318)
T ss_dssp SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSC-B---CSCEEEEE-TTEEEEEEEEBTTTCCEEEEEE
T ss_pred CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcc-c---cccceEEE-CCEEEEEcCccCCCCcccceEE
Confidence 5667777773 12 177788877765433211111 0 11122222 455555 4543 3577
Q ss_pred EEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecC------CCeEEEEEcCCceeeEE--eeccccCeE
Q 014125 198 VFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY------SQTSAIYREDNMELLYV--LHGQEGGVT 269 (430)
Q Consensus 198 v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~------dg~v~~~d~~~~~~~~~--~~~~~~~i~ 269 (430)
+||+.+. .+.....+......| ..+.. ++.+++.|+. -..+.+||..+.+-... +........
T Consensus 131 ~yd~~~~--~W~~~~~~p~~r~~~----~~~~~---~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~ 201 (318)
T 2woz_A 131 CYDPVAA--KWSEVKNLPIKVYGH----NVISH---NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFG 201 (318)
T ss_dssp EEETTTT--EEEEECCCSSCEESC----EEEEE---TTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCE
T ss_pred EEeCCCC--CEeECCCCCCccccc----EEEEE---CCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccce
Confidence 7887653 222222221111121 22222 5567777764 24589999887653322 111111122
Q ss_pred EEEEccCCCEEEEEecCC----CeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccC------------
Q 014125 270 HVQFSRDGNYLYTGGRKD----PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQD------------ 333 (430)
Q Consensus 270 ~~~~~~~~~~l~~~~~~d----~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------------ 333 (430)
.+.+ +++.++.++..+ ..+.+||+.+..-. .+............+.+ ++++++.|+.+
T Consensus 202 ~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~--~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~~~ 275 (318)
T 2woz_A 202 VAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKWE--VMTEFPQERSSISLVSL--AGSLYAIGGFAMIQLESKEFAPT 275 (318)
T ss_dssp EEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCEE--ECCCCSSCCBSCEEEEE--TTEEEEECCBCCBC----CCBCC
T ss_pred EEEE--CCEEEEEcCcCCCCccceEEEEECCCCeEE--ECCCCCCcccceEEEEE--CCEEEEECCeeccCCCCceeccc
Confidence 2222 566666666222 35778998776422 22111111111222222 46677777654
Q ss_pred --CcEEEEEcCCCCee
Q 014125 334 --GLVHIYDLQTGKWI 347 (430)
Q Consensus 334 --g~i~vwd~~~~~~~ 347 (430)
..+.+||+.+.+..
T Consensus 276 ~~~~v~~yd~~~~~W~ 291 (318)
T 2woz_A 276 EVNDIWKYEDDKKEWA 291 (318)
T ss_dssp BCCCEEEEETTTTEEE
T ss_pred eeeeEEEEeCCCCEeh
Confidence 34778888776543
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=94.89 E-value=1.1 Score=35.49 Aligned_cols=149 Identities=11% Similarity=-0.008 Sum_probs=76.6
Q ss_pred eeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccc--cccceEEEEECCCCcEEEEEcCCeEEE
Q 014125 121 SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVD--EITAAFSVAFNPTGTKIFAGYNKSVRV 198 (430)
Q Consensus 121 ~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~d~~i~v 198 (430)
.+.+++| +|++.+.++ .+|.+.-.+..+.....-+....... .-..-.++.|.|+|.+.++ .||.|.-
T Consensus 42 ~~~~laf-------~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav-~dG~iyr 111 (236)
T 1tl2_A 42 NFKFLFL-------SPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV-SKDKLYK 111 (236)
T ss_dssp TCSEEEE-------CTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE-ETTEEEE
T ss_pred cceeEEE-------CCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe-CCCEEEE
Confidence 5567777 777876666 77776666654422211111100000 0001368999999988888 7798887
Q ss_pred EEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCce------eeEEee-ccccCeEEE
Q 014125 199 FDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME------LLYVLH-GQEGGVTHV 271 (430)
Q Consensus 199 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~------~~~~~~-~~~~~i~~~ 271 (430)
++-.+.+.. .....-...-..--..+..+.+.| ++.+.++. |+.++-....+.. ....+- ..-.....+
T Consensus 112 ~~pP~~~~~-~Wl~~a~~vg~~gw~~~~~lff~p-~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l 187 (236)
T 1tl2_A 112 ASPPQSDTD-NWIARATEVGSGGWSGFKFLFFHP-NGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFL 187 (236)
T ss_dssp ESCCCSTTC-CHHHHSEEEECSSGGGEEEEEECT-TSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEE
T ss_pred eCCCcCCCC-ceeccccEeccCCCCceEEEEECC-CceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEE
Confidence 765332211 000000000011224579999999 56566666 7776543332211 011111 222234556
Q ss_pred EEccCCCEEEEE
Q 014125 272 QFSRDGNYLYTG 283 (430)
Q Consensus 272 ~~~~~~~~l~~~ 283 (430)
.|.+++...++.
T Consensus 188 ~f~~~G~l~~v~ 199 (236)
T 1tl2_A 188 FFSSVGTLFGVQ 199 (236)
T ss_dssp EECTTSCEEEEE
T ss_pred EECCCCcEEEEe
Confidence 788888766554
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.88 E-value=1.7 Score=37.57 Aligned_cols=142 Identities=12% Similarity=0.025 Sum_probs=63.7
Q ss_pred CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-Ec------CCeEEEEEcCCCCCcccccccccCCCCC
Q 014125 148 HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GY------NKSVRVFDVHRPGRDFEKYSTLKGNKEG 220 (430)
Q Consensus 148 g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~------d~~i~v~d~~~~~~~~~~~~~~~~~~~~ 220 (430)
..+.+||+.+.+....-....... .-.+++.. ++++++. |. ...+.+||++.....+.....+.... .
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~---~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~-~ 242 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGT---AGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPD-G 242 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCC---BSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTT-C
T ss_pred ccEEEEeCCCCcEEECCCCCCCCc---ccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCc-c
Confidence 468899998876554422221100 10123332 4555553 32 34677788743333333322221110 0
Q ss_pred CCcceEEEEEcCCCCceEEEecCC----------------------CeEEEEEcCCcee--eEEeeccccCeEEEEEccC
Q 014125 221 QAGIMSAIAFSPTHTGMLAIGSYS----------------------QTSAIYREDNMEL--LYVLHGQEGGVTHVQFSRD 276 (430)
Q Consensus 221 ~~~~v~~~~~~~~~~~~l~~~~~d----------------------g~v~~~d~~~~~~--~~~~~~~~~~i~~~~~~~~ 276 (430)
.....++.+ ++.+++.|+.+ ..+.+||+.+.+- +..+......-.++. .+
T Consensus 243 -~~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~ 316 (357)
T 2uvk_A 243 -VAGGFAGIS---NDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLP--WN 316 (357)
T ss_dssp -CBSCEEEEE---TTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEE--ET
T ss_pred -cccceEEEE---CCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEE--eC
Confidence 011122222 45677777642 2578899876542 322322222222222 36
Q ss_pred CCEEEEEecCCC------eEEEEeCCCCceE
Q 014125 277 GNYLYTGGRKDP------YILCWDLRKAVQV 301 (430)
Q Consensus 277 ~~~l~~~~~~d~------~i~i~d~~~~~~~ 301 (430)
++.++.|| .++ .|.++++++.+..
T Consensus 317 ~~i~v~GG-~~~~~~~~~~v~~l~~~~~~~~ 346 (357)
T 2uvk_A 317 NSLLIIGG-ETAGGKAVTDSVLITVKDNKVT 346 (357)
T ss_dssp TEEEEEEE-ECGGGCEEEEEEEEEC-CCSCE
T ss_pred CEEEEEee-eCCCCCEeeeEEEEEEcCcEeE
Confidence 67777777 432 4566677776544
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=92.71 E-value=7.7 Score=37.64 Aligned_cols=290 Identities=11% Similarity=-0.030 Sum_probs=147.2
Q ss_pred CceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCce
Q 014125 61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV 140 (430)
Q Consensus 61 ~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (430)
..|.++...++|.+.+ |+.+ -+.+++..+.......... ... ..-....|+++.- ..+|.
T Consensus 232 ~~i~~i~~d~~g~lWi-gT~~-Gl~~~~~~~~~~~~~~~~~-------~~~---~~l~~~~i~~i~~-------D~~g~- 291 (758)
T 3ott_A 232 NSIKSLALDGNGDLLA-GTDN-GLYVYHNDTTPLQHIIHDS-------RNI---QSLTNNIIWNIFA-------DQEHN- 291 (758)
T ss_dssp EEEEEEEECTTCCEEE-EETT-EEEEECCTTSCCEEECCCT-------TCT---TSCSCSCEEEEEE-------CTTCC-
T ss_pred CeEEEEEEcCCCCEEE-EeCC-ceeEEecCCCcEEEEEcCC-------CCc---CcCCcCeEEEEEE-------cCCCC-
Confidence 3477777777776554 4444 4777877654321100000 000 0011235777765 44555
Q ss_pred EEEEeCCCcEEEEeccCCceeeeeecc--cccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCC-cccccccccCC
Q 014125 141 FASTTRDHPIHLWDATTGLLRCTYRAY--DAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGR-DFEKYSTLKGN 217 (430)
Q Consensus 141 l~~~~~dg~i~vwd~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~-~~~~~~~~~~~ 217 (430)
|-.|+..| +.++... .. ...+... ........|.++.-..+|.+.+++.+ -+..++...... ...........
T Consensus 292 lWiGT~~G-l~~~~~~-~~-~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt~~-Gl~~~~~~~~~~~~~~~~~~~~~~ 367 (758)
T 3ott_A 292 IWLGTDYG-ISLSRYN-SA-LQFIPISQITGTGDGNQFYSLFRDSKGFYWFGGAN-GLIRFTDPAGERHDAIWYRMGDKT 367 (758)
T ss_dssp EEEEESSS-EEEECCC-C--CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEEETT-EEEEESCTTSSCCCCEEECTTCSS
T ss_pred EEEEeCCc-ccccccC-Cc-eeEEecccCCCCCCCceEEEEEEcCCCCEEEeeCC-cceeecccccccceeEEeccCCcC
Confidence 44455556 5544332 21 1111110 00011236888888888888877654 466666543211 11111100000
Q ss_pred CCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEe--ec----cccCeEEEEEccCCCEEEEEecCCCeEE
Q 014125 218 KEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVL--HG----QEGGVTHVQFSRDGNYLYTGGRKDPYIL 291 (430)
Q Consensus 218 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~--~~----~~~~i~~~~~~~~~~~l~~~~~~d~~i~ 291 (430)
..-....|.++.-.+ .+ .|..|+ ++-+..||..+++..... .. ....|.++...++|. |..++ ..+-|.
T Consensus 368 ~~l~~~~v~~i~~d~-~g-~lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigT-~~~Gl~ 442 (758)
T 3ott_A 368 YPLSHNRIRHIYEDK-EQ-QLWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQ-LWIST-CLGGIF 442 (758)
T ss_dssp SCCSCSCEEEEEECT-TS-CEEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSE-EEEEE-SSSCEE
T ss_pred CCCCCCceEEEEECC-CC-CEEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCC-EEEEE-CCCceE
Confidence 011224588888776 33 344455 457999998876543221 11 123578888877775 44455 556678
Q ss_pred EEeCCCC-----ceEE--EEeeccc-CCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccc-c--ccCCeeEE
Q 014125 292 CWDLRKA-----VQVV--YKLYRSS-EHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQ-A--AADTVNGF 360 (430)
Q Consensus 292 i~d~~~~-----~~~~--~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~--~~~~v~~~ 360 (430)
++|..+. .... ....... -....|.++...++|.+.+.++..+-|..+|..+++...... . ....+.++
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i 522 (758)
T 3ott_A 443 VVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYL 522 (758)
T ss_dssp EEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEE
T ss_pred EEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceE
Confidence 8875421 1111 0111111 123458889889888876533334458889988765433211 1 12457788
Q ss_pred EEcCCCcEEEEeeCCceeeec
Q 014125 361 SFHPFLPMAASSSGHRRFPVD 381 (430)
Q Consensus 361 ~~~~~~~~l~s~~~d~~~~vw 381 (430)
....+|.+.+.. ..| +..+
T Consensus 523 ~~d~~g~lWigt-~~G-l~~~ 541 (758)
T 3ott_A 523 LCDEDGLLWVGF-HGG-VMRI 541 (758)
T ss_dssp EECTTSCEEEEE-TTE-EEEE
T ss_pred EECCCCCEEEEe-cCc-eEEE
Confidence 888888876654 445 4444
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=92.57 E-value=3.9 Score=36.92 Aligned_cols=109 Identities=12% Similarity=0.116 Sum_probs=61.2
Q ss_pred ceEEEEECCCCc--EEEEEcCCeEEEEEcCCCCCcccccccccCCCC-----CCCcceEEEEEcCC---CCceEEEecC-
Q 014125 175 AAFSVAFNPTGT--KIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKE-----GQAGIMSAIAFSPT---HTGMLAIGSY- 243 (430)
Q Consensus 175 ~v~~~~~~~~~~--~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~---~~~~l~~~~~- 243 (430)
..+.|+|.|++. ++++...|.|++++...... ...+..+..... ........|+|+|+ ++.++++-+.
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~-~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIF-KEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBC-SSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCee-eeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 567899999995 77788899999997532111 111111111111 12456789999994 2444444332
Q ss_pred -C----------CeEEEEEcCC----------ceeeEEee--ccccCeEEEEEccCCCEEEEEe
Q 014125 244 -S----------QTSAIYREDN----------MELLYVLH--GQEGGVTHVQFSRDGNYLYTGG 284 (430)
Q Consensus 244 -d----------g~v~~~d~~~----------~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~ 284 (430)
+ ..|.-|.+.. .+.+..+. .....-..|+|.|||.+.++.+
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~G 157 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILG 157 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEEC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeC
Confidence 1 1344455432 12222222 1123467899999998777766
|
| >3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=91.80 E-value=5.5 Score=33.94 Aligned_cols=199 Identities=7% Similarity=0.006 Sum_probs=102.2
Q ss_pred ceEEEEeCCCcEEEEeccCCceee----eeecccccccccceEEE-EECCCCcEEEEEcCCeEEEEEc---CCCCCcc--
Q 014125 139 CVFASTTRDHPIHLWDATTGLLRC----TYRAYDAVDEITAAFSV-AFNPTGTKIFAGYNKSVRVFDV---HRPGRDF-- 208 (430)
Q Consensus 139 ~~l~~~~~dg~i~vwd~~~~~~~~----~~~~~~~~~~~~~v~~~-~~~~~~~~l~~~~d~~i~v~d~---~~~~~~~-- 208 (430)
..+++.+.+|.|+--.+.+-+... -...... .....+..+ .-+....+++.+..|.++-... .......
T Consensus 4 ~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~-ke~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G 82 (327)
T 3uc1_A 4 DVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGL-KQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARG 82 (327)
T ss_dssp EEEEEEETTSEEEEEEHHHHHHHC--------CCC-CGGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCC
T ss_pred cEEEEEeCCCEEEEeeHHHhhhcccCCCCcccccc-CCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCC
Confidence 467888889988876543211100 0000000 111133333 3344445555677777665543 2211100
Q ss_pred cccccccCCCCCCCcceEEE-EEcCC-CCceEEEecCCCeEEEEEcCCce-------eeEEeeccccCeEEEEEccCCCE
Q 014125 209 EKYSTLKGNKEGQAGIMSAI-AFSPT-HTGMLAIGSYSQTSAIYREDNME-------LLYVLHGQEGGVTHVQFSRDGNY 279 (430)
Q Consensus 209 ~~~~~~~~~~~~~~~~v~~~-~~~~~-~~~~l~~~~~dg~v~~~d~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~ 279 (430)
..+..+.. +.. ...|..+ .+... ....++..+.+|.++.-.+.... ....+.. ...+..+........
T Consensus 83 ~~i~~~l~-l~~-~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ 159 (327)
T 3uc1_A 83 QHVANLLA-FQP-EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDD 159 (327)
T ss_dssp EEHHHHTT-CCT-TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCE
T ss_pred EEHHHccC-CCC-CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCE
Confidence 00001111 122 2335444 44321 35689999999999998765432 1222332 344555555445566
Q ss_pred EEEEecCCCeEEEEeCC--CCceE-----EEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCC
Q 014125 280 LYTGGRKDPYILCWDLR--KAVQV-----VYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQT 343 (430)
Q Consensus 280 l~~~~~~d~~i~i~d~~--~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 343 (430)
|+..+ ..|.+..+... .-... -..... ......|.++...+.+.+|+..+..|.++.-.+..
T Consensus 160 ill~T-~~G~~~rf~~~~~eip~~gr~a~Gv~~i~-L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e 228 (327)
T 3uc1_A 160 LLLVS-ANGQSIRFSATDEALRPMGRATSGVQGMR-FNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEE 228 (327)
T ss_dssp EEEEE-TTSEEEEEECCTTTSCCCCTTSBCEESSC-CCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred EEEEE-CCCeEEEEECcccccCcCCcCCCCeeeec-CCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHH
Confidence 77777 78988887766 21100 001111 12345566666666677899999999999887653
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=91.00 E-value=7.4 Score=33.90 Aligned_cols=179 Identities=12% Similarity=0.036 Sum_probs=98.7
Q ss_pred cceEEEEEc---CC---CCceE-EEecCCCeEEEEEcCCceeeEEeec--------------c----ccCeEEEEEccC-
Q 014125 223 GIMSAIAFS---PT---HTGML-AIGSYSQTSAIYREDNMELLYVLHG--------------Q----EGGVTHVQFSRD- 276 (430)
Q Consensus 223 ~~v~~~~~~---~~---~~~~l-~~~~~dg~v~~~d~~~~~~~~~~~~--------------~----~~~i~~~~~~~~- 276 (430)
..+..+.+. |. +..++ ++=+..+.|.+||+.+++..+.+.. . ...+..|+.+|+
T Consensus 152 S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~ 231 (381)
T 3q6k_A 152 TYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRD 231 (381)
T ss_dssp GGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCC
T ss_pred CccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCc
Confidence 457778777 21 12343 3334567899999998876554421 0 136788999998
Q ss_pred ---CCEEEEEecCCC-eEEEEe---CCCCc--eEEEEeecccCCccceEEEEEc-CCCCEEEEEccCCcEEEEEcCC-C-
Q 014125 277 ---GNYLYTGGRKDP-YILCWD---LRKAV--QVVYKLYRSSEHTNQRILFDIE-PSGRHLGTGGQDGLVHIYDLQT-G- 344 (430)
Q Consensus 277 ---~~~l~~~~~~d~-~i~i~d---~~~~~--~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~vwd~~~-~- 344 (430)
++.|+-.. ..+ .+.--. +++.. ..+..+.. .+....-..++++ .+|.++++--..+.|..|+..+ .
T Consensus 232 ~~~~~~LYf~p-lss~~ly~V~T~~L~~~~~~~~v~~~G~-kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~ 309 (381)
T 3q6k_A 232 SEGNRPAYYLA-GSAIKVYSVNTKELKQKGGKLNPELLGN-RGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPL 309 (381)
T ss_dssp TTSCCEEEEEE-SSCSEEEEEEHHHHSSTTCCCCCEEEEE-CCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSB
T ss_pred CCCCeEEEEEE-CCCCcEEEEEHHHhhCcchhhceEEeee-cCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCcc
Confidence 77777766 333 333222 11111 11111111 1212334456775 6787777778888999999875 1
Q ss_pred --Ceeccccc--ccCCeeEEEEcCCCcEEEEeeCCceeeecCCCccccccCCCcEEEEee-ccccccc
Q 014125 345 --KWISGFQA--AADTVNGFSFHPFLPMAASSSGHRRFPVDDFEDLHLSGDENCVSVWSF-LYASMME 407 (430)
Q Consensus 345 --~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~-~~~~~~~ 407 (430)
+....+.. .-..+..+.+.++|.+.+.+.. +..+....+. -..+-..+||.+ ...+.+.
T Consensus 310 ~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn~---l~~~~~g~l~-d~~~~nfrI~r~~~~~~~i~ 373 (381)
T 3q6k_A 310 RMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSNG---FPPIRKSEKF-KYDFPRYRLMRIMDTQEAIA 373 (381)
T ss_dssp CGGGEEEEEECTTCCSEEEEEECTTSCEEEEECS---CCSSTTGGGC-CCSSCSEEEEEESCHHHHHT
T ss_pred ccCceEEEEECCCccccCeEEECCCCeEEEEECc---chHhhcCCcC-CCCcCCEEEEEecCHHHHhc
Confidence 11222221 1124678888888887777653 2212111110 124567889987 6655543
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=90.56 E-value=8.9 Score=36.77 Aligned_cols=117 Identities=10% Similarity=0.061 Sum_probs=60.2
Q ss_pred CCceEEEEeCCC--cEEEEeccCCceeeeeecccccccccceEEEEECCC-CcEEEE-Ec--C-----CeEEEEEcCCCC
Q 014125 137 TSCVFASTTRDH--PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT-GTKIFA-GY--N-----KSVRVFDVHRPG 205 (430)
Q Consensus 137 ~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~-~~--d-----~~i~v~d~~~~~ 205 (430)
++.+++.|+.++ .+.+||+.+......-.............++.+..+ +++++. |. + +.+.+||+.+..
T Consensus 500 ~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 500 DGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp TSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred CCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 677788887655 689999988765433221001011112223555555 555554 43 2 468899987754
Q ss_pred C----cccccccccCCCCCCCcceEEEEEcCCCCceEEEecC--------CCeEEEEEcCCceee
Q 014125 206 R----DFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY--------SQTSAIYREDNMELL 258 (430)
Q Consensus 206 ~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--------dg~v~~~d~~~~~~~ 258 (430)
- .+....... ... .....++.+. ++.+++.|+. ...|.+||+.+.+-.
T Consensus 580 w~~~~~W~~~~~~p--~~~-R~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 580 ATEPITVIKKLQHP--LFQ-RYGSQIKYIT--PRKLLIVGGTSPSGLFDRTNSIISLDPLSETLT 639 (695)
T ss_dssp SSCCEEEEEEEECG--GGC-CBSCEEEEEE--TTEEEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred cccceEEEEcCCCC--CCC-cccceEEEeC--CCEEEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence 1 011111100 001 1112233332 2567888774 346899999876543
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=90.25 E-value=0.38 Score=43.85 Aligned_cols=119 Identities=11% Similarity=0.106 Sum_probs=65.9
Q ss_pred CceeEEEECcCCceEEEecC-CCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCc
Q 014125 61 NFLKGIKWSPDGSSFLTSSE-DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC 139 (430)
Q Consensus 61 ~~v~~~~~sp~~~~l~s~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (430)
.....+..+|||++++.++. +.++.|+|+........-... .. .........-+..-...+| .++|.
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~---~~--~~~~~ae~e~GlGPlHt~F-------d~~G~ 390 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLA---DP--RDVIVGEPELGLGPLHTTF-------DGRGN 390 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCS---CG--GGGEEECCBCCSCEEEEEE-------CSSSE
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhcccc---Cc--ccceEeeccCCCcccEEEE-------CCCCc
Confidence 34567999999999887665 789999998742110000000 00 0000111122333444555 77886
Q ss_pred eEEEEeCCCcEEEEeccCC----------ceeeeeecccccccccceEEEEECCCCcEEEEE
Q 014125 140 VFASTTRDHPIHLWDATTG----------LLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG 191 (430)
Q Consensus 140 ~l~~~~~dg~i~vwd~~~~----------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 191 (430)
...+-.-|..|.-|++... ..+..+..+-..+|.....+=.-.|+|++|++.
T Consensus 391 aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~l 452 (638)
T 3sbq_A 391 AYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVAL 452 (638)
T ss_dssp EEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEE
T ss_pred eEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEe
Confidence 6677778999999998753 344445554433322111111235678888754
|
| >3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=89.12 E-value=9.7 Score=32.42 Aligned_cols=220 Identities=9% Similarity=-0.003 Sum_probs=104.8
Q ss_pred CCceeEEEECcCCceEEEecCCCeEEE---EeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCC
Q 014125 60 NNFLKGIKWSPDGSSFLTSSEDKTLRI---FSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP 136 (430)
Q Consensus 60 ~~~v~~~~~sp~~~~l~s~~~dg~v~i---w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 136 (430)
.+.+..+........|+.-+..|.++- |+++.... ..........+.+..+..|.++.-.+. .+
T Consensus 41 ~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r---------~~~G~~i~~~l~l~~~e~i~~~~~~~~----~~ 107 (327)
T 3uc1_A 41 DDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASR---------TARGQHVANLLAFQPEERIAQVIQIRG----YT 107 (327)
T ss_dssp GGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCS---------SSCCEEHHHHTTCCTTCCEEEEEEESS----TT
T ss_pred CCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCc---------cCCCEEHHHccCCCCCCEEEEEEEecc----CC
Confidence 344555544444556666666676543 33432211 001111111222334455555533221 23
Q ss_pred CCceEEEEeCCCcEEEEeccCCceeee--eecccccccccceEEE-EECCCCcEEEEEcCCeEEEEEcC--CCCCcccc-
Q 014125 137 TSCVFASTTRDHPIHLWDATTGLLRCT--YRAYDAVDEITAAFSV-AFNPTGTKIFAGYNKSVRVFDVH--RPGRDFEK- 210 (430)
Q Consensus 137 ~~~~l~~~~~dg~i~vwd~~~~~~~~~--~~~~~~~~~~~~v~~~-~~~~~~~~l~~~~d~~i~v~d~~--~~~~~~~~- 210 (430)
+...++..+.+|.++--.+..-..... .....-.+ ...+..+ ..+.+..+++.+..|.+..+... .-......
T Consensus 108 ~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a 186 (327)
T 3uc1_A 108 DAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRAT 186 (327)
T ss_dssp SSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTS
T ss_pred CCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCC
Confidence 567899999999999988755221110 11111101 1133333 34444555568889998888776 21110000
Q ss_pred cccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCcee-------eEE--eeccccCeEEEEEccCCCEEE
Q 014125 211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL-------LYV--LHGQEGGVTHVQFSRDGNYLY 281 (430)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~-------~~~--~~~~~~~i~~~~~~~~~~~l~ 281 (430)
.......+ .....|.++...+ ....++..+..|.++.-.+..... +.. +....+.+..+....+...++
T Consensus 187 ~Gv~~i~L-~~~d~Vv~~~~~~-~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~ 264 (327)
T 3uc1_A 187 SGVQGMRF-NIDDRLLSLNVVR-EGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELY 264 (327)
T ss_dssp BCEESSCC-CTTCCEEEEEECC-TTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEE
T ss_pred CCeeeecC-CCCCEEEEEEEEC-CCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEE
Confidence 00000111 2234466665555 344788888999998877543221 111 211123444444333344455
Q ss_pred EEecCCCeEEEEeCC
Q 014125 282 TGGRKDPYILCWDLR 296 (430)
Q Consensus 282 ~~~~~d~~i~i~d~~ 296 (430)
..+ .+|.+.-++..
T Consensus 265 l~T-~~G~~ir~~~~ 278 (327)
T 3uc1_A 265 AVT-SGGGVIRTAAR 278 (327)
T ss_dssp EEE-GGGCEEEEEGG
T ss_pred EEc-CCCeEEEEehh
Confidence 555 56666656543
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=88.45 E-value=14 Score=33.33 Aligned_cols=60 Identities=12% Similarity=-0.017 Sum_probs=32.3
Q ss_pred cceEEEEEcCC-------CCEEEEEccCCcEEEEEcCCCCee---ccc-cc--------ccCCeeEEEEcCCCcEEEEee
Q 014125 313 NQRILFDIEPS-------GRHLGTGGQDGLVHIYDLQTGKWI---SGF-QA--------AADTVNGFSFHPFLPMAASSS 373 (430)
Q Consensus 313 ~~v~~~~~~~~-------~~~l~~~~~dg~i~vwd~~~~~~~---~~~-~~--------~~~~v~~~~~~~~~~~l~s~~ 373 (430)
..+..+.|-.. |.+|+ +...+.|....++..... ..+ .+ ....+.++...|+|.++++..
T Consensus 276 ~Ap~G~~~Y~G~~fP~~~g~~f~-~~~~g~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~~v~~~pdG~Lyv~~~ 354 (463)
T 2wg3_C 276 GPLVGGFVYRGCQSERLYGSYVF-GDRNGNFLTLQQSPVTKQWQEKPLCLGTSGSCRGYFSGHILGFGEDELGEVYILSS 354 (463)
T ss_dssp -CEEEEEECCCSSCTTTTTCEEE-EETTSCEEEEEC-----CCEEEEECEEETTSSCSCCCSEEEEEEECTTCCEEEEEE
T ss_pred ccccceEEEeCCCChhhcceEEE-ecCCCcEEEEEeCCCCceeeEEEeecCCcccccccccCcceEEEECCCCCEEEEec
Confidence 45677777432 33444 444477666665533211 111 11 124689999999999887765
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=88.08 E-value=19 Score=34.54 Aligned_cols=227 Identities=10% Similarity=0.017 Sum_probs=109.9
Q ss_pred CCCCceEEEE-eCC----CcEEEEeccCCceeee-eecccccc---cccceEEEEECCCCcEEEEE-----------cCC
Q 014125 135 DPTSCVFAST-TRD----HPIHLWDATTGLLRCT-YRAYDAVD---EITAAFSVAFNPTGTKIFAG-----------YNK 194 (430)
Q Consensus 135 ~~~~~~l~~~-~~d----g~i~vwd~~~~~~~~~-~~~~~~~~---~~~~v~~~~~~~~~~~l~~~-----------~d~ 194 (430)
+|++++++.+ |.. ..++++|+.+++.+.. +. ..... .......++|..++.++++. ...
T Consensus 138 ~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~-~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~~~~~~ 216 (711)
T 4hvt_A 138 FQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFE-PITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITSSLYPN 216 (711)
T ss_dssp SSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSC-CBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCTTSSBC
T ss_pred CCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcc-cccccccccccccceeeEECCCEEEEEeCCCCCCcCcCCCCC
Confidence 6788776654 333 3699999999876631 11 10000 00011344776555555532 125
Q ss_pred eEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCc----eEEEec---CCCeEEEEEcCC--ceeeEEeeccc
Q 014125 195 SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTG----MLAIGS---YSQTSAIYREDN--MELLYVLHGQE 265 (430)
Q Consensus 195 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~l~~~~---~dg~v~~~d~~~--~~~~~~~~~~~ 265 (430)
.|+.|.+-++...-..+..- .. .........++++.. .+++.+ ....+.+.+... ++. ..+....
T Consensus 217 ~v~~~~~Gt~~~~~~~v~~~----~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~ 290 (711)
T 4hvt_A 217 SLYIWKRGESIEKAKKLFEV----PK-EYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKL-QKINMPS 290 (711)
T ss_dssp EEEEEETTSCGGGCEEEEEC----CT-TSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEE-EECCSCT
T ss_pred EEEEEECCCChHHCeEEecc----CC-CceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcc-eEeecCC
Confidence 68888876542221111111 11 111234445554443 344333 224566666553 332 2222122
Q ss_pred cCeEEEEEccCCCEEEEEe---------cCCCeEEEEeCCCCc------eEEEEeecccCCccceEEEEEcCCCCEEEEE
Q 014125 266 GGVTHVQFSRDGNYLYTGG---------RKDPYILCWDLRKAV------QVVYKLYRSSEHTNQRILFDIEPSGRHLGTG 330 (430)
Q Consensus 266 ~~i~~~~~~~~~~~l~~~~---------~~d~~i~i~d~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 330 (430)
. ..+..+.++.+++... ...+.|...|+.+.. .....+.. ......+..+.+..+ .++++.
T Consensus 291 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~-~l~~~~ 366 (711)
T 4hvt_A 291 D--ATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFT-PTANEVFNFISTTKD-RVFLAT 366 (711)
T ss_dssp T--CEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEEC-CCTTEEEEEEEECSS-CEEEEE
T ss_pred c--ceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEEC-CCCCCeEEEEEEECC-EEEEEE
Confidence 1 1123344555444321 035678888886531 11111111 234456778888875 577777
Q ss_pred ccCCc--EEEEEcCCCC-eecc-cccc-cCCeeEEEEcCCCc-EEEEe
Q 014125 331 GQDGL--VHIYDLQTGK-WISG-FQAA-ADTVNGFSFHPFLP-MAASS 372 (430)
Q Consensus 331 ~~dg~--i~vwd~~~~~-~~~~-~~~~-~~~v~~~~~~~~~~-~l~s~ 372 (430)
..++. |+++++.+++ .+.. +... .+.+..+...+++. ++++.
T Consensus 367 ~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ 414 (711)
T 4hvt_A 367 YDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITI 414 (711)
T ss_dssp EETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEE
T ss_pred EECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEE
Confidence 77765 7777776664 2222 2211 24566666667665 44443
|
| >1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1 | Back alignment and structure |
|---|
Probab=87.77 E-value=12 Score=31.69 Aligned_cols=202 Identities=10% Similarity=0.035 Sum_probs=105.3
Q ss_pred CCCceEEEEeCCCcEEEEeccCCceeee----eecccccccccceEEE-EECCCCcEEEEEcCCeEEEEEcCC---CCCc
Q 014125 136 PTSCVFASTTRDHPIHLWDATTGLLRCT----YRAYDAVDEITAAFSV-AFNPTGTKIFAGYNKSVRVFDVHR---PGRD 207 (430)
Q Consensus 136 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~----~~~~~~~~~~~~v~~~-~~~~~~~~l~~~~d~~i~v~d~~~---~~~~ 207 (430)
++...+++.+.+|.|+--.+..-+.... ...... .....+..+ ..+.....++.+..|.++-+.... .+..
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~l-ke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~ 84 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDL-NDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA 84 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCC-CTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceeccc-CCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence 3566788999999999887654321110 000000 111133333 334445556678888877776542 1100
Q ss_pred c--cccccccCCCCCCCcceEEEEEcCC--CCceEEEecCCCeEEEEEcCCc-------eeeEEeeccccCeEEEEEccC
Q 014125 208 F--EKYSTLKGNKEGQAGIMSAIAFSPT--HTGMLAIGSYSQTSAIYREDNM-------ELLYVLHGQEGGVTHVQFSRD 276 (430)
Q Consensus 208 ~--~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~v~~~d~~~~-------~~~~~~~~~~~~i~~~~~~~~ 276 (430)
. ........ +.. ...|..+...++ ....++..+..|.++...+... .....+.. ...+..+.....
T Consensus 85 ~~G~~i~~~l~-l~~-~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~ 161 (312)
T 1suu_A 85 SKGQNISELIN-LGD-QEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFK 161 (312)
T ss_dssp ---CBGGGTSC-CCT-TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECT
T ss_pred CCCcChhhccC-CCC-CCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCC
Confidence 0 00000111 112 233444433221 3456778899999998876432 22223332 445666555444
Q ss_pred CCEEEEEecCCCeEEEEeCCCCce-----EEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCC
Q 014125 277 GNYLYTGGRKDPYILCWDLRKAVQ-----VVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQT 343 (430)
Q Consensus 277 ~~~l~~~~~~d~~i~i~d~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 343 (430)
+..++..+ .+|.+..+....-.. .-....... ....+..+..-+++..|++.+..|..+..++..
T Consensus 162 ~~~i~l~T-~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~-~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 162 DEKVICLS-KKGSAFIFNSRDVRLTNRGTQGVCGMKLK-EGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp TCEEEEEE-TTSEEEEEEGGGSCBCCTTBCCEECCCCC-TTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred CCEEEEEe-CCCcEEEEEHHHccccCCCCCCeEeEEeC-CCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 55677777 799988887653110 000111111 244566665555567788889999999888753
|
| >1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=87.37 E-value=12 Score=31.48 Aligned_cols=200 Identities=10% Similarity=-0.016 Sum_probs=100.0
Q ss_pred CCceEEEEeCCCcEEEEeccCCceeee----eecccccccccce-EEEEECCCCcEEEEEcCCeEEEEEcC---CCCCcc
Q 014125 137 TSCVFASTTRDHPIHLWDATTGLLRCT----YRAYDAVDEITAA-FSVAFNPTGTKIFAGYNKSVRVFDVH---RPGRDF 208 (430)
Q Consensus 137 ~~~~l~~~~~dg~i~vwd~~~~~~~~~----~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~d~~i~v~d~~---~~~~~~ 208 (430)
+...+++.+.+|.|+--.+.+-+.... ..... ......+ ..+..+....+++.+..|.++-+... ..+...
T Consensus 2 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~-~ke~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a 80 (307)
T 1zi0_A 2 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAAR-IKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGA 80 (307)
T ss_dssp CCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSS
T ss_pred CCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeee-eCCCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCC
Confidence 455788899999998776654221111 00000 0011123 23334445556667778876666543 221110
Q ss_pred --cccccccCCCCCCCcceEEEEEcC--CCCceEEEecCCCeEEEEEcCCc-------eeeEEeeccccCeEEEEEccCC
Q 014125 209 --EKYSTLKGNKEGQAGIMSAIAFSP--THTGMLAIGSYSQTSAIYREDNM-------ELLYVLHGQEGGVTHVQFSRDG 277 (430)
Q Consensus 209 --~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~dg~v~~~d~~~~-------~~~~~~~~~~~~i~~~~~~~~~ 277 (430)
........ +. ....|.++..-+ .....++..+..|.++.-.+... .....+..+ +.+..+......
T Consensus 81 ~G~~i~~~l~-l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~ 157 (307)
T 1zi0_A 81 RGRPIVNLLP-LE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGE 157 (307)
T ss_dssp CCEEGGGTSC-CC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTT
T ss_pred CCeEhhhccC-CC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCC
Confidence 00011111 11 223455553321 13456888999999999876432 122223323 455555554445
Q ss_pred CEEEEEecCCCeEEEEeCCCCceE-----EEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcC
Q 014125 278 NYLYTGGRKDPYILCWDLRKAVQV-----VYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQ 342 (430)
Q Consensus 278 ~~l~~~~~~d~~i~i~d~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 342 (430)
..++..+ .+|.+..+....-... -..... ......|..+...+++..|++.+..|.++-.++.
T Consensus 158 ~~i~l~T-~~G~~irf~~~~v~~~gr~a~Gv~~i~-L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~ 225 (307)
T 1zi0_A 158 DEVMLFS-AEGKVVRFKESSVRAMGCNTTGVRGIR-LGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVA 225 (307)
T ss_dssp CEEEEEE-TTSEEEEEEGGGSCBCCTTCCCEECCC-CCTTCCEEEEECCCSSCEEEEEETTSEEEEECGG
T ss_pred CEEEEEC-CCCcEEEEEHHHcCccCCCCCCeEeEE-eCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHH
Confidence 5666666 7888877766432110 001111 1233456666555556678888999998888764
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=85.44 E-value=3.5 Score=41.16 Aligned_cols=37 Identities=16% Similarity=0.170 Sum_probs=31.1
Q ss_pred CceeEEEECcCCceEEEecCCCeEEEEeCCCCCCccc
Q 014125 61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYD 97 (430)
Q Consensus 61 ~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~ 97 (430)
..+.++...++..++++-+.|+++|+|++.+++++..
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t 272 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVET 272 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEee
Confidence 3567788888888999999999999999998876544
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=84.92 E-value=15 Score=30.36 Aligned_cols=241 Identities=11% Similarity=-0.020 Sum_probs=121.5
Q ss_pred ceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceE
Q 014125 62 FLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF 141 (430)
Q Consensus 62 ~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 141 (430)
.|..|+....- .++. . ||.|..|-......... + ......|..++- . ....+
T Consensus 25 ~i~~ia~G~~h-~~~l-~-~G~v~~wG~n~~Gqlg~---p--------------~~~~~~i~~ia~-------G-~~hs~ 76 (282)
T 3qhy_B 25 GVDAIAGGYFH-GLAL-K-GGKVLGWGANLNGQLTM---P--------------AATQSGVDAIAA-------G-NYHSL 76 (282)
T ss_dssp SCCEEEECSSE-EEEE-E-TTEEEEEECCSSSTTSC---C--------------GGGGSCCCEEEE-------C-SSEEE
T ss_pred CCcEEEeCCCe-EEEE-E-CCEEEEEeCCCCCCCCC---C--------------ccCCCCEEEEEe-------C-CCEEE
Confidence 46677665432 3333 4 89999997654322210 0 001124444443 1 12233
Q ss_pred EEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccCCCCCC
Q 014125 142 ASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQ 221 (430)
Q Consensus 142 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~ 221 (430)
+. . ||.|..|-....-.+.. +. .....|..++..... .++.. +|.|+.|-....+..... ...
T Consensus 77 ~l-~-~G~v~~wG~n~~Gqlg~---P~--~~~~~v~~ia~G~~h-s~al~-~G~v~~wG~n~~gqlg~~--------~~~ 139 (282)
T 3qhy_B 77 AL-K-DGEVIAWGGNEDGQTTV---PA--EARSGVDAIAAGAWA-SYALK-DGKVIAWGDDSDGQTTVP--------AEA 139 (282)
T ss_dssp EE-E-TTEEEEEECCTTSTTCC---CG--GGSSSEEEEEEETTE-EEEEE-TTEEEEEECCTTSTTSCC--------GGG
T ss_pred EE-E-CCEEEEeeCCCCCCCCC---Cc--ccCCCeEEEECcCCE-EEEEe-CCeEEEecCCCCCcCCCC--------ccC
Confidence 33 4 89999997654221111 00 011256667665443 34445 999999987654332110 011
Q ss_pred CcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceE
Q 014125 222 AGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQV 301 (430)
Q Consensus 222 ~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~ 301 (430)
...|..++... ...+.-. +|.|+.|-......+..-......|..++..... .++. . ||.|+.|-.....+.
T Consensus 140 ~~~i~~i~~G~---~~~~~l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h-s~al-~--~G~v~~wG~n~~gql 211 (282)
T 3qhy_B 140 QSGVTALDGGV---YTALAVK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFH-SLAL-K--DGKVIAWGDNRYKQT 211 (282)
T ss_dssp GSSEEEEEECS---SEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSE-EEEE-E--TTEEEEEECCTTSTT
T ss_pred CCCeEEEEccc---CEEEEEE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCCE-EEEE-E--CCeEEEEECCCCCCC
Confidence 23477776643 2333333 7999999765432221111123467777764432 2333 3 899999976654332
Q ss_pred EEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCC
Q 014125 302 VYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFL 366 (430)
Q Consensus 302 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 366 (430)
-.. ......|..++.... ..++. . ||.|+.|-.....++.. ...|.+|+-....
T Consensus 212 g~p----~~~~~~v~~i~~G~~-h~~al-~-~g~v~~wG~n~~gq~~v----~~~v~~iaaG~~h 265 (282)
T 3qhy_B 212 TVP----TEALSGVSAIASGEW-YSLAL-K-NGKVIAWGSSRTAPSSV----QSGVSSIEAGPNA 265 (282)
T ss_dssp CCC----GGGGSSCCEEEECSS-CEEEE-E-TTEEEEESTTCCCCGGG----SSCEEEEEECSSC
T ss_pred CCC----cccCCCceEEEcCCC-EEEEE-E-CCEEEEecCCCCccccC----CCCcEEEEECcCe
Confidence 111 112334666665443 23333 3 99999998776544433 2356666555433
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=84.86 E-value=16 Score=30.35 Aligned_cols=204 Identities=12% Similarity=-0.023 Sum_probs=106.3
Q ss_pred CCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceE
Q 014125 147 DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMS 226 (430)
Q Consensus 147 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~ 226 (430)
||.|..|-....-.+.. +. .....|..++.......++ . ||.|..|-....+..-... . -...|.
T Consensus 41 ~G~v~~wG~n~~Gqlg~-p~----~~~~~i~~ia~G~~hs~~l-~-~G~v~~wG~n~~Gqlg~P~-~-------~~~~v~ 105 (282)
T 3qhy_B 41 GGKVLGWGANLNGQLTM-PA----ATQSGVDAIAAGNYHSLAL-K-DGEVIAWGGNEDGQTTVPA-E-------ARSGVD 105 (282)
T ss_dssp TTEEEEEECCSSSTTSC-CG----GGGSCCCEEEECSSEEEEE-E-TTEEEEEECCTTSTTCCCG-G-------GSSSEE
T ss_pred CCEEEEEeCCCCCCCCC-Cc----cCCCCEEEEEeCCCEEEEE-E-CCEEEEeeCCCCCCCCCCc-c-------cCCCeE
Confidence 89999997654221111 00 1112566777654444443 4 9999999876543321100 0 123577
Q ss_pred EEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEee
Q 014125 227 AIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLY 306 (430)
Q Consensus 227 ~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~ 306 (430)
.++... ...+.-. +|.|+.|-......+.........|..++.... +.++-. ||.|+.|-.....+...+
T Consensus 106 ~ia~G~---~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~--~~~~l~--~G~v~~wG~n~~gqlg~p-- 175 (282)
T 3qhy_B 106 AIAAGA---WASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVY--TALAVK--NGGVIAWGDNYFGQTTVP-- 175 (282)
T ss_dssp EEEEET---TEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS--EEEEEE--TTEEEEEECCTTSTTSCC--
T ss_pred EEECcC---CEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccC--EEEEEE--CCEEEEecCCCCCCCCCc--
Confidence 777754 2344445 999999976543222111122345777765433 233332 688999976654322111
Q ss_pred cccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCC
Q 014125 307 RSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 307 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~ 383 (430)
......|..++.... +.+.- .||.|+.|-....-.+..-......|..|+-.....++++ ||.+..|..
T Consensus 176 --~~~~~~v~~i~~G~~--hs~al-~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h~~al~---~g~v~~wG~ 244 (282)
T 3qhy_B 176 --AEAQSGVDDVAGGIF--HSLAL-KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWYSLALK---NGKVIAWGS 244 (282)
T ss_dssp --GGGGSSEEEEEECSS--EEEEE-ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSCEEEEE---TTEEEEEST
T ss_pred --eecCCCeEEEEecCC--EEEEE-ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCEEEEEE---CCEEEEecC
Confidence 112345777765433 33333 6999999987653222211112235666665443333333 777777744
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=81.97 E-value=25 Score=30.64 Aligned_cols=115 Identities=16% Similarity=0.063 Sum_probs=58.4
Q ss_pred ceEEEEECC---CCcEEEEEcCCeEEEEEcCCCCCcccccccccCCC------------CCCCcceEEEEEcCCCCceEE
Q 014125 175 AAFSVAFNP---TGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNK------------EGQAGIMSAIAFSPTHTGMLA 239 (430)
Q Consensus 175 ~v~~~~~~~---~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~------------~~~~~~v~~~~~~~~~~~~l~ 239 (430)
.|.++++.| .+.+.+++..+.|. .....+..+.......... ......+.+|.++|.+...+.
T Consensus 116 ~i~~l~~~~~~~~~~l~~g~~~ggl~--~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~ 193 (394)
T 3b7f_A 116 HVFWLTPGHASEPGTWYAGTSPQGLF--RSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLY 193 (394)
T ss_dssp EEEEEEECCTTSTTCEEEEEETTEEE--EESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEE
T ss_pred ceeEEEeCCCCCCCEEEEEecCCcEE--EEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEE
Confidence 577889986 34555555556544 3344444444332110000 012245889999985555556
Q ss_pred EecCCCeEEEEEcCCceeeEEeec-----c--------ccCeEEEEEccC-CCEEEEEecCCCeEEEEe
Q 014125 240 IGSYSQTSAIYREDNMELLYVLHG-----Q--------EGGVTHVQFSRD-GNYLYTGGRKDPYILCWD 294 (430)
Q Consensus 240 ~~~~dg~v~~~d~~~~~~~~~~~~-----~--------~~~i~~~~~~~~-~~~l~~~~~~d~~i~i~d 294 (430)
++..++.|...+- .++.-..+.. + ...+.+++++|. ...|+++. ..+ |...+
T Consensus 194 vg~~~ggl~~s~D-gG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~-~~g-l~~s~ 259 (394)
T 3b7f_A 194 IGMSSGGVFESTD-AGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQN-HCG-IYRMD 259 (394)
T ss_dssp EEEETBEEEEESS-TTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEE-TTE-EEEEE
T ss_pred EEECCCCEEEECC-CCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEc-CCe-EEEeC
Confidence 6655555544322 2222222210 0 124889999986 35666666 444 44443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 430 | ||||
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 3e-17 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-10 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 3e-05 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 4e-15 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 4e-14 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-08 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 0.001 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 7e-15 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 9e-12 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 4e-09 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 0.001 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 3e-13 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 2e-05 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 3e-05 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 3e-05 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-04 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 6e-11 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-10 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 4e-06 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 9e-04 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 0.003 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 1e-08 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 2e-06 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 1e-05 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-08 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-07 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 7e-05 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-07 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 1e-07 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 3e-05 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 4e-04 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-07 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 4e-07 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-06 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 3e-07 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 5e-07 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 9e-07 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-04 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 7e-07 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 1e-06 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 3e-06 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 4e-04 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 4e-06 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 0.002 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 0.004 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 5e-06 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 2e-04 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-05 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 3e-05 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 1e-04 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 2e-04 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 0.001 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 0.003 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 0.004 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 0.001 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 0.001 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 80.2 bits (196), Expect = 3e-17
Identities = 52/306 (16%), Positives = 97/306 (31%), Gaps = 40/306 (13%)
Query: 65 GIKWSPDGSSFLTSSEDKTLRIFSLPEN-------GISYDVNACSLAKDQDSYEASLVVT 117
+ + P S +++SED T++++ G + V S +
Sbjct: 22 RVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADM 81
Query: 118 EGESVY-----------DFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRA 166
+ + P S +RD I +W+ TG T+
Sbjct: 82 TIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTG 141
Query: 167 YDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDV-----------HRPGRDFEKYSTL 214
+ V N GT I + +++VRV+ V HR + ++
Sbjct: 142 HREWV-----RMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPE 196
Query: 215 KGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFS 274
S S L GS +T ++ L L G + V V F
Sbjct: 197 SSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFH 256
Query: 275 RDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDG 334
G ++ + D + WD + + + L + H + D + ++ TG D
Sbjct: 257 SGGKFILSCA-DDKTLRVWDYKNK-RCMKTL---NAHEHFVTSLDFHKTAPYVVTGSVDQ 311
Query: 335 LVHIYD 340
V +++
Sbjct: 312 TVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 59.8 bits (143), Expect = 2e-10
Identities = 39/270 (14%), Positives = 73/270 (27%), Gaps = 30/270 (11%)
Query: 135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNK 194
P V S + D I +WD TG T + + D + A
Sbjct: 26 HPVFSVMVSASEDATIKVWDYETGDFERTLKGHT--DSVQDISFDHSGKLLASCSADMTI 83
Query: 195 SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN 254
+ F R + + + + S +T ++
Sbjct: 84 KLWDFQGFECIRTMHGHD-----------HNVSSVSIMPNGDHIVSASRDKTIKMWEVQT 132
Query: 255 MELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQV------------- 301
+ G V V+ ++DG + + D + W +
Sbjct: 133 GYCVKTFTGHREWVRMVRPNQDGTLIASCSN-DQTVRVWVVATKECKAELREHRHVVECI 191
Query: 302 ---VYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVN 358
Y S G L +G +D + ++D+ TG + + V
Sbjct: 192 SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVR 251
Query: 359 GFSFHPFLPMAASSSGHRRFPVDDFEDLHL 388
G FH S + + V D+++
Sbjct: 252 GVLFHSGGKFILSCADDKTLRVWDYKNKRC 281
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 43.2 bits (100), Expect = 3e-05
Identities = 32/210 (15%), Positives = 55/210 (26%), Gaps = 43/210 (20%)
Query: 259 YVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQV----------------- 301
Y L G VT V F + + + D I WD
Sbjct: 11 YALSGHRSPVTRVIFHPVFSVMVSASE-DATIKVWDYETGDFERTLKGHTDSVQDISFDH 69
Query: 302 ---------------------VYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYD 340
+ H + I P+G H+ + +D + +++
Sbjct: 70 SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE 129
Query: 341 LQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFED----LHLSGDENCVS 396
+QTG + F + V + + AS S + V L + V
Sbjct: 130 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVE 189
Query: 397 VWSFLYASMMENADGINGCEFNCQSEHENL 426
S+ S + G E +
Sbjct: 190 CISWAPESSYSSISEATGSETKKSGKPGPF 219
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 73.6 bits (179), Expect = 4e-15
Identities = 31/173 (17%), Positives = 63/173 (36%), Gaps = 14/173 (8%)
Query: 123 YDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFN 182
+ P + +F S D LWD G+ R T+ +++ ++ F
Sbjct: 181 TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES-----DINAICFF 235
Query: 183 PTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIG 241
P G G + + R+FD+ +++++FS + +L G
Sbjct: 236 PNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG------ITSVSFSKSGR-LLLAG 288
Query: 242 SYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWD 294
++ + VL G + V+ + + DG + TG D ++ W+
Sbjct: 289 YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW-DSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 70.9 bits (172), Expect = 4e-14
Identities = 44/371 (11%), Positives = 93/371 (25%), Gaps = 51/371 (13%)
Query: 3 EEEQQQTLQQQQIYSDTEVTEAAQENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNF 62
E+ + Q ++ +D +++ P+ R + RT + + I
Sbjct: 12 EQLKNQIRDARKACADATLSQITNN-----IDPVGRIQMRTRRTL----RGHLAKI---- 58
Query: 63 LKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESV 122
+ W D +++S+D L I+ V
Sbjct: 59 -YAMHWGTDSRLLVSASQDGKLIIW---------------------------DSYTTNKV 90
Query: 123 YDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFN 182
+ + + ++ + V
Sbjct: 91 HAIPLRSS-----WVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGY 145
Query: 183 PTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS 242
+ + D D E +M T + G+
Sbjct: 146 LSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVM--SLSLAPDTRLFVSGA 203
Query: 243 YSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVV 302
++ ++ G E + + F +GN TG D +DLR +++
Sbjct: 204 CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD-DATCRLFDLRADQELM 262
Query: 303 YKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSF 362
+ + + F SGR L G D +++D + V+
Sbjct: 263 TYSHDNIICGITSVSFS--KSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGV 320
Query: 363 HPFLPMAASSS 373
A+ S
Sbjct: 321 TDDGMAVATGS 331
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 53.2 bits (126), Expect = 2e-08
Identities = 18/148 (12%), Positives = 50/148 (33%), Gaps = 28/148 (18%)
Query: 54 RTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEAS 113
+T + + + I + P+G++F T S+D T R+F L + +
Sbjct: 220 QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD------------ 267
Query: 114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEI 173
+ + + + + D ++WDA +D + +
Sbjct: 268 ---NIICGITSVSF-------SKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD--NRV 315
Query: 174 TAAFSVAFNPTGTKIF-AGYNKSVRVFD 200
+ + G + ++ +++++
Sbjct: 316 S---CLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 38.6 bits (88), Expect = 0.001
Identities = 26/231 (11%), Positives = 60/231 (25%), Gaps = 45/231 (19%)
Query: 213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQ 272
TL+G+ + A+ + +L S I+ ++ + + V
Sbjct: 50 TLRGHL----AKIYAMHWGTDSR-LLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA 104
Query: 273 FSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPS--------- 323
++ GNY+ GG + + + V + ++ +
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDT 164
Query: 324 -------------------------------GRHLGTGGQDGLVHIYDLQTGKWISGFQA 352
R +G D ++D++ G F
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 224
Query: 353 AADTVNGFSFHPFLPMAASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYA 403
+N F P A+ S + D + ++ + +
Sbjct: 225 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITS 275
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 73.7 bits (179), Expect = 7e-15
Identities = 55/343 (16%), Positives = 121/343 (35%), Gaps = 44/343 (12%)
Query: 66 IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNA-CSLAKDQDSYEASLVVTEGESVYD 124
+K+S DG +L + +KT +++ + + + ++ + KD ++ S + +
Sbjct: 68 VKFSNDGE-YLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRS 126
Query: 125 FCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT 184
C+ P D + R I + ++ D F
Sbjct: 127 VCFSP-----DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDY------FPSG 175
Query: 185 GTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS 244
+ +++VR++D+ ++ +A SP +A GS
Sbjct: 176 DKLVSGSGDRTVRIWDLRTGQCSLTLS---------IEDGVTTVAVSPGDGKYIAAGSLD 226
Query: 245 QTSAIYREDNMELLYVLH-------GQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRK 297
+ ++ + L+ L G + V V F+RDG + +G D + W+L+
Sbjct: 227 RAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL-DRSVKLWNLQN 285
Query: 298 AVQVVYK--------LYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISG 349
A H + + + ++ +G +D V +D ++G +
Sbjct: 286 ANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLM 345
Query: 350 FQAAADTV------NGFSFHPFLPMAASSSGHRRFPVDDFEDL 386
Q ++V NG S P + A+ SG + + ++ +
Sbjct: 346 LQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 388
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 64.0 bits (154), Expect = 9e-12
Identities = 44/277 (15%), Positives = 94/277 (33%), Gaps = 33/277 (11%)
Query: 52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYE 111
+S + +++ + +SPDG T +ED+ +RI+ + I + Y
Sbjct: 113 NTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYF 172
Query: 112 ASLVVTEG------------------ESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLW 153
S ++ ++ S A+ + D + +W
Sbjct: 173 PSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVW 232
Query: 154 DATTGLLRCTYRAYDAVDE--ITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEK 210
D+ TG L + + + +SV F G + +G ++SV+++++ +
Sbjct: 233 DSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDS 292
Query: 211 YS----TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEG 266
+ T + G + ++A + + GS + + + + L +L G
Sbjct: 293 KTPNSGTCEVTYIGHKDFVLSVATTQNDE-YILSGSKDRGVLFWDKKSGNPLLMLQGHRN 351
Query: 267 GVTHV------QFSRDGNYLYTGGRKDPYILCWDLRK 297
V V + N TG D W +K
Sbjct: 352 SVISVAVANGSSLGPEYNVFATGS-GDCKARIWKYKK 387
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 56.0 bits (133), Expect = 4e-09
Identities = 43/263 (16%), Positives = 88/263 (33%), Gaps = 24/263 (9%)
Query: 178 SVAFNPTGTKIFAGYNKSVRVFDVHRP----------GRDFEKYSTLKGNKEGQAGIMSA 227
V F+ G + G NK+ +V+ V + + + + + +
Sbjct: 67 CVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRS 126
Query: 228 IAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKD 287
+ FSP LA G+ + I+ +N +++ +L G E + + + G+ G D
Sbjct: 127 VCFSPDGK-FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDK-LVSGSGD 184
Query: 288 PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKW- 346
+ WDLR + T G+++ G D V ++D +TG
Sbjct: 185 RTVRIWDLRTGQCSLTLSIEDGVTTV----AVSPGDGKYIAAGSLDRAVRVWDSETGFLV 240
Query: 347 ------ISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFEDLHLSGDENCVSVWSF 400
D+V F S S R + + ++ + D + +
Sbjct: 241 ERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTC 300
Query: 401 LYASMMENADGINGCEFNCQSEH 423
+ + + D + E+
Sbjct: 301 EV-TYIGHKDFVLSVATTQNDEY 322
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.6 bits (88), Expect = 0.001
Identities = 15/114 (13%), Positives = 31/114 (27%), Gaps = 18/114 (15%)
Query: 41 VPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNA 100
+T + T +F+ + + + L+ S+D+ + + +
Sbjct: 289 KSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQG 348
Query: 101 CSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWD 154
SV S P VFA+ + D +W
Sbjct: 349 HR-----------------NSVISVAVANGSSLG-PEYNVFATGSGDCKARIWK 384
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.3 bits (165), Expect = 3e-13
Identities = 45/319 (14%), Positives = 102/319 (31%), Gaps = 30/319 (9%)
Query: 68 WSPDGSSFLTSSEDKTLRIFSLPEN-------GISYDVNACSLAKDQDSYEASLVVTEGE 120
G+ ++ S+D TL+++S G + V + + + ++ +
Sbjct: 23 LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVW 82
Query: 121 SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTY-RAYDAVDEITAAFSV 179
+ + T + DAT + + + AA
Sbjct: 83 NAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRC 142
Query: 180 AFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLA 239
+ Y+ V+V+D T +G + ++ F H +
Sbjct: 143 VQYDGRRVVSGAYDFMVKVWDPE--------TETCLHTLQGHTNRVYSLQFDGIH---VV 191
Query: 240 IGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAV 299
GS + ++ + ++ L G + + ++ N L + G D + WD++
Sbjct: 192 SGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVS-GNADSTVKIWDIKTGQ 248
Query: 300 QVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAA----- 354
+ + +Q + ++ + + T DG V ++DL+TG++I
Sbjct: 249 CLQTLQGP---NKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSG 305
Query: 355 DTVNGFSFHPFLPMAASSS 373
V + A S
Sbjct: 306 GVVWRIRASNTKLVCAVGS 324
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.4 bits (103), Expect = 2e-05
Identities = 37/278 (13%), Positives = 77/278 (27%), Gaps = 26/278 (9%)
Query: 131 MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA 190
++ S + D+ + +W A TG T + +S +
Sbjct: 20 ITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTG-----GVWSSQMRDNIIISGS 74
Query: 191 GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIY 250
S + H + GS T ++
Sbjct: 75 TDRTLKVWNAETGECIHTLYG------------HTSTVRCMHLHEKRVVSGSRDATLRVW 122
Query: 251 REDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSE 310
+ + L+VL G V VQ+ D + WD L+
Sbjct: 123 DIETGQCLHVLMGHVAAVRCVQYDGRRVVSGA---YDFMVKVWDPET----ETCLHTLQG 175
Query: 311 HTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAA 370
HTN+ + ++ G H+ +G D + ++D++TG I +G + ++
Sbjct: 176 HTNRV--YSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSG 233
Query: 371 SSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYASMMEN 408
++ + + + +N
Sbjct: 234 NADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN 271
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.6 bits (101), Expect = 3e-05
Identities = 11/113 (9%), Positives = 34/113 (30%), Gaps = 1/113 (0%)
Query: 311 HTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAA 370
H + ++ ++ G + +G D + ++ TGK + V + ++
Sbjct: 15 HDD-HVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISG 73
Query: 371 SSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYASMMENADGINGCEFNCQSEH 423
S+ + + + + + +V + + E
Sbjct: 74 STDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIET 126
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.3 bits (100), Expect = 3e-05
Identities = 27/184 (14%), Positives = 55/184 (29%), Gaps = 26/184 (14%)
Query: 121 SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVA 180
++ + D S + D I +WD TG T + ++ +
Sbjct: 172 TLQGHTNRVYSLQFDGI--HVVSGSLDTSIRVWDVETGNCIHTLTGHQSL-------TSG 222
Query: 181 FNPTGTKIFAGYN-KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLA 239
+ +G +V+++D+ +G SA+ + +
Sbjct: 223 MELKDNILVSGNADSTVKIWDIKTGQCLQ--------TLQGPNKHQSAVTCLQFNKNFVI 274
Query: 240 IGSYSQTSAIYREDNMELLYVL-----HGQEGGVTHVQFSRDGNYLYTGGR---KDPYIL 291
S T ++ E + L G G V ++ S G R ++ +L
Sbjct: 275 TSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLL 334
Query: 292 CWDL 295
D
Sbjct: 335 VLDF 338
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.3 bits (95), Expect = 1e-04
Identities = 17/155 (10%), Positives = 45/155 (29%), Gaps = 22/155 (14%)
Query: 68 WSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGE----SVY 123
DG ++ S D ++R++ + + + + +++V+ ++
Sbjct: 183 LQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIW 242
Query: 124 DFCWFPH-------------MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAV 170
D ++ +++ D + LWD TG ++
Sbjct: 243 DIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESG 302
Query: 171 DEITAAFSVAFNPTGTKIFAGYN-----KSVRVFD 200
+ + + T G + V D
Sbjct: 303 GSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 337
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 61.4 bits (147), Expect = 6e-11
Identities = 38/347 (10%), Positives = 95/347 (27%), Gaps = 55/347 (15%)
Query: 69 SPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWF 128
S S ++ S D L+++ + S ++
Sbjct: 21 SACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKS-----------GLHHVDVL 69
Query: 129 PHMSASDPTSCVFASTTRDHPIHLWDATTG-----LLRCTYRAYDAVDEITAAFSVAFNP 183
+ C+ A+T+ + + T ++ D+ + + +++ +
Sbjct: 70 QAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGA 129
Query: 184 TGTK------IFAGYNKSVRVFDVHRPGRDFEKYSTLKGNK----------EGQAGIMSA 227
+ + + + ++ H + + + ++
Sbjct: 130 SNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATS 189
Query: 228 IAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE------GGVTHVQFSRDGNYLY 281
+ S G++A G + T I + LY Q + V+FS G+ L
Sbjct: 190 VDISER--GLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLA 247
Query: 282 TGG--RKDPYILCWDLRKAVQVVYKLYRSSEHTNQRIL---------FDIEPSGRHLGTG 330
I ++ ++ + SG L +
Sbjct: 248 IAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSA 307
Query: 331 GQDGLVHIYDLQTGKWISGFQAAADTV----NGFSFHPFLPMAASSS 373
G DG + +D++T + I+ D + + + A
Sbjct: 308 GWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG 354
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.4 bits (142), Expect = 2e-10
Identities = 30/288 (10%), Positives = 76/288 (26%), Gaps = 21/288 (7%)
Query: 66 IKWSPDGSSFLTSSEDKTLRIFSLPEN------------GISYDVNACSLAKDQDSYEAS 113
+ S T ++++ + + +C L D +
Sbjct: 57 VTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVG 115
Query: 114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEI 173
+ P + A +S P + +
Sbjct: 116 GEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTL 175
Query: 174 TAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPT 233
F + + + + R ++ + + + ++ + PT
Sbjct: 176 VRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPT 235
Query: 234 HTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCW 293
+ S ++ + LH V ++F+ G + + G KD + W
Sbjct: 236 GEWLAVGMESSNVEVLHVNKPDKYQLHLHESC--VLSLKFAYCGKWFVSTG-KDNLLNAW 292
Query: 294 DLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDL 341
S+ ++ + DI +++ TG D +Y++
Sbjct: 293 RTPYG-----ASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.0 bits (107), Expect = 4e-06
Identities = 27/291 (9%), Positives = 65/291 (22%), Gaps = 47/291 (16%)
Query: 141 FASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG----YNKSV 196
T + +WD + + D ++ S P G + G
Sbjct: 65 HVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIW 124
Query: 197 RVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME 256
+ + S + + + ++QT + + +
Sbjct: 125 DLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD 184
Query: 257 LLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVV-------------- 302
+ G D R+ + D + +
Sbjct: 185 GASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGME 244
Query: 303 -----------YKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQ 351
Y+ H + + G+ + G+D L++ + G I
Sbjct: 245 SSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS- 303
Query: 352 AAADTVNGFSFHPFLPMAASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLY 402
+ +V + S + +V+ +Y
Sbjct: 304 KESSSVLSCDISVDDKYIVTGS-----------------GDKKATVYEVIY 337
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.0 bits (89), Expect = 9e-04
Identities = 26/131 (19%), Positives = 41/131 (31%), Gaps = 6/131 (4%)
Query: 219 EGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRE--DNMELLYVLHGQEGGVTHVQFSRD 276
+G G A +F T G + + + I + + L V V S
Sbjct: 4 QGAMGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISNP 62
Query: 277 GNYLYTGGRKDPYILCWDLRKAVQV-VYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGL 335
++YTGG + WD+ N + P G L GG+
Sbjct: 63 TRHVYTGG--KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAST 120
Query: 336 VHIYDLQTGKW 346
+ I+DL
Sbjct: 121 LSIWDLAAPTP 131
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.1 bits (84), Expect = 0.003
Identities = 10/127 (7%), Positives = 29/127 (22%), Gaps = 25/127 (19%)
Query: 28 NQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIF 87
+ + + + + +K++ G F+++ +D L +
Sbjct: 233 CPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAW 292
Query: 88 SLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRD 147
P + E SV + + D
Sbjct: 293 RTP------------------YGASIFQSKESSSVLSCDI-------SVDDKYIVTGSGD 327
Query: 148 HPIHLWD 154
+++
Sbjct: 328 KKATVYE 334
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 54.4 bits (130), Expect = 1e-08
Identities = 24/216 (11%), Positives = 49/216 (22%), Gaps = 11/216 (5%)
Query: 129 PHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKI 188
H+S + RD +++ D + + S
Sbjct: 64 VHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYA 123
Query: 189 FAG--YNKSVRVFDVHRPG---RDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY 243
AG + + D + T + ++AI S +
Sbjct: 124 IAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE 183
Query: 244 SQTSAIYREDNMELLYVLHGQEGGVTH-VQFSRDGNYLYTGGRKDPYILCWDLRKAVQVV 302
+ + ++ L H Y T ++ D ++
Sbjct: 184 TGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKE----- 238
Query: 303 YKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHI 338
KL + Q + H G H+
Sbjct: 239 GKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHM 274
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 47.1 bits (111), Expect = 2e-06
Identities = 30/356 (8%), Positives = 72/356 (20%), Gaps = 54/356 (15%)
Query: 65 GIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYD 124
+ S G D + + L + G
Sbjct: 66 ISRLSASGRYLFVIGRDGKVNMIDL----------------WMKEPTTVAEIKIGSEARS 109
Query: 125 FCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAA------FS 178
D A + D T + + +
Sbjct: 110 IETSKMEGWEDKY--AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAA 167
Query: 179 VAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGML 238
+ + + ++ ++ V + K + + + +H +
Sbjct: 168 ILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISA-----ERFLHDGGLDGSHRYFI 222
Query: 239 AIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKA 298
+ + +L + ++ G R N+++
Sbjct: 223 TAANARNKLVVIDTKEGKL---VAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSV 279
Query: 299 VQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQ------- 351
+ ++ + + G L ++Y T +
Sbjct: 280 ALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFD 339
Query: 352 ----AAADTVNGFSFHPFLPMAASSSGHRRFPVDDFEDLHLS----GDENCVSVWS 399
+ F P A + G R + G E SVW+
Sbjct: 340 IKAMTGDGSDPEFKTLPIAEWAGITEGQPRV-------VQGEFNKDGTEVWFSVWN 388
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 44.8 bits (105), Expect = 1e-05
Identities = 26/123 (21%), Positives = 41/123 (33%), Gaps = 5/123 (4%)
Query: 267 GVTHVQFSRDGNYLYTGGRKDPYILCWDLR-KAVQVVYKLYRSSEHTNQRILFDIEPSGR 325
V + S G YL+ GR D + DL K V ++ SE + +
Sbjct: 63 AVHISRLSASGRYLFVIGR-DGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDK 121
Query: 326 HL-GTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAA--SSSGHRRFPVDD 382
+ I D +T + T + +HP +AA +S F V+
Sbjct: 122 YAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV 181
Query: 383 FED 385
E
Sbjct: 182 KET 184
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 53.2 bits (126), Expect = 2e-08
Identities = 31/282 (10%), Positives = 65/282 (23%), Gaps = 39/282 (13%)
Query: 133 ASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-- 190
A T + +H+ D + + + + + + P +
Sbjct: 3 ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCV----MPDKFGPGTAMMAPDNRTAYVLN 58
Query: 191 GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIY 250
+ + D+ ++ L M + A SP + A + +Q +
Sbjct: 59 NHYGDIYGIDLDT--CKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDH 116
Query: 251 REDNMELLYVL-------------HGQEGGVTHVQFSRDGNYLYTGGRKDPYIL------ 291
L V V ++ + DG+ G +
Sbjct: 117 YVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYT 176
Query: 292 -----------CWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYD 340
+ + E + + + + T D
Sbjct: 177 VALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD 236
Query: 341 LQTGKWI-SGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVD 381
L+TGK F + P P +R D
Sbjct: 237 LKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYD 278
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 50.9 bits (120), Expect = 1e-07
Identities = 30/309 (9%), Positives = 81/309 (26%), Gaps = 29/309 (9%)
Query: 54 RTSSIPNNF-LKGIKWSPDGSS-FLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYE 111
++ +P+ F +PD + ++ ++ + L ++ N S+ +
Sbjct: 32 KSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSM 91
Query: 112 ASLVVT-EGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAV 170
S ++ +G+ VY + + + + ++ GL R +
Sbjct: 92 YSFAISPDGKEVY-------ATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP 144
Query: 171 DEITAAFS------VAFNPTGTKIFAGYNKSVRVFDVHRPGRDF---EKYSTLKGNKEGQ 221
++ + P K+ K + R ++ +
Sbjct: 145 RQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPR 204
Query: 222 AGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED---NMELLYVLHGQEGGVTHVQFSRDGN 278
+ + D S
Sbjct: 205 HEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDP 264
Query: 279 YLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHI 338
G + +DL++ KL +++ + + G L GG + +
Sbjct: 265 NQIYGV--LNRLAKYDLKQ-----RKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAV 317
Query: 339 YDLQTGKWI 347
++ T + +
Sbjct: 318 FNPDTLEKV 326
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 42.4 bits (98), Expect = 7e-05
Identities = 18/174 (10%), Positives = 36/174 (20%), Gaps = 10/174 (5%)
Query: 228 IAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEG-GVTHVQFSRDGNYLYTGGRK 286
A H + + +Y + + + + G + D Y
Sbjct: 2 PALKAGHE-YMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNH 60
Query: 287 DPYILCWDL--RKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTG 344
I DL K E F I P G+ +
Sbjct: 61 YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK 120
Query: 345 KWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFEDLHLSGDENCVSVW 398
+ + P+ + + + +D L +
Sbjct: 121 PPR------LEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKM 168
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 51.0 bits (120), Expect = 1e-07
Identities = 30/304 (9%), Positives = 79/304 (25%), Gaps = 20/304 (6%)
Query: 65 GIKWSPDGSS-FLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVY 123
+P G + T ++ ++L L G + S +++ ++
Sbjct: 38 VPMVAPGGRIAYATVNKSESLVKIDL-VTGETLGRIDLSTPEERVKSLFGAALSP----- 91
Query: 124 DFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNP 183
+ S + + + L+DA T R + A + +A+
Sbjct: 92 -DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQI------TMLAWAR 144
Query: 184 TGTKIFA-GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGM-LAIG 241
G+K++ G + V + D S + +
Sbjct: 145 DGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYT 204
Query: 242 SYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQV 301
+ L + + G + + + ++ + ++
Sbjct: 205 ARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLES 264
Query: 302 V----YKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTV 357
+ + ++ G + GG G + YD +T + +
Sbjct: 265 FDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNAS 324
Query: 358 NGFS 361
+
Sbjct: 325 MSLA 328
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.6 bits (119), Expect = 1e-07
Identities = 36/323 (11%), Positives = 83/323 (25%), Gaps = 25/323 (7%)
Query: 59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTE 118
P +++ IK P S L +S D +L ++ + D+
Sbjct: 10 PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL--------------RY 55
Query: 119 GESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFS 178
+ + + + + + T + +
Sbjct: 56 KHPLLCCNFIDN----TDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYG 111
Query: 179 VAFNPTGTKIFAGYNKSVR------VFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSP 232
+ R + + + + + + + ++ + S
Sbjct: 112 DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQ 171
Query: 233 THTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILC 292
L + + ++ V + + S DG
Sbjct: 172 VQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYN 231
Query: 293 WDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQA 352
R A + + + + P + L T G DG++ ++LQT K I F
Sbjct: 232 SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAK 291
Query: 353 A-ADTVNGFSFHPFLPMAASSSG 374
D+V + + A+S
Sbjct: 292 FNEDSVVKIACSDNILCLATSDD 314
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.3 bits (100), Expect = 3e-05
Identities = 11/93 (11%), Positives = 31/93 (33%), Gaps = 3/93 (3%)
Query: 255 MELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQ 314
M+++ + + ++ ++ + L D + + + V L +S + +
Sbjct: 1 MQIVQIEQAPKDYISDIKIIPSKSLLLITSW-DGSLTVYKFDIQAKNV-DLLQSLRYKHP 58
Query: 315 -RILFDIEPSGRHLGTGGQDGLVHIYDLQTGKW 346
I+ + + G G + DL
Sbjct: 59 LLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPS 91
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.8 bits (91), Expect = 4e-04
Identities = 29/300 (9%), Positives = 63/300 (21%), Gaps = 30/300 (10%)
Query: 120 ESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSV 179
+ + D P+ + T+ D + ++
Sbjct: 12 DYISDIKI-------IPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKH--PLLCC 62
Query: 180 AFNP-TGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGML 238
F T +I+ G + + F+ + + N +
Sbjct: 63 NFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDG 122
Query: 239 AIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKA 298
I + ++ L + + + + + + + L
Sbjct: 123 LIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVG--MNNSQVQWFRLPLC 180
Query: 299 VQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTG-------------- 344
+ S R + + DG V +
Sbjct: 181 EDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRC 240
Query: 345 -KWISGFQAAADTVNGFSFHP--FLPMAASSSGHRRF-PVDDFEDLHLSGDENCVSVWSF 400
+ A VN F P A S G + + + N SV
Sbjct: 241 HRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKI 300
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 50.6 bits (119), Expect = 2e-07
Identities = 29/187 (15%), Positives = 54/187 (28%), Gaps = 10/187 (5%)
Query: 226 SAIAFSPTHTGMLAIGSYSQTSAIYREDN--MELLYVLHGQEGGVTHVQFSRDGNYLYTG 283
S A++ T +AI + IY + ++ L G VT V ++ D N + T
Sbjct: 11 SCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69
Query: 284 GRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQT 343
G D W L+ P+ + G ++ I +
Sbjct: 70 GT-DRNAYVWTLKGRTWKPT--LVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQ 126
Query: 344 GK----WISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFEDLHLSGDENCVSVWS 399
+ TV +HP + A+ S + + + S
Sbjct: 127 ENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGS 186
Query: 400 FLYASMM 406
+ +
Sbjct: 187 KMPFGEL 193
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 49.5 bits (116), Expect = 4e-07
Identities = 40/351 (11%), Positives = 82/351 (23%), Gaps = 72/351 (20%)
Query: 66 IKWSPDGSSFLTSSEDKTLRIFSLPEN---------GISYDVNACSLAKDQD-----SYE 111
W+ D + + + I+ N + V A D + +
Sbjct: 13 HAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTD 72
Query: 112 ASLVVTEGESVYDFCWFPHMSASD--------PTSCVFASTTRDHPIHLWDATTGLLRCT 163
+ V + + + P FA + I +
Sbjct: 73 RNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWV 132
Query: 164 YRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYST---------- 213
+ T + + R+F + + T
Sbjct: 133 CKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGE 192
Query: 214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQF 273
L G + + FS + +A S+ T + D + L + + V F
Sbjct: 193 LMFESSSSCGWVHGVCFSANGS-RVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTF 251
Query: 274 SRDGNYLYTGGRKDPYILCWD-----------------------------------LRKA 298
+ + + G P + +D
Sbjct: 252 ITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSE 311
Query: 299 VQVVYKLYRSSEHTNQ----RILFDIEPSGRHLGTGGQDGLVHIYDLQTGK 345
S H N +L + T G DG + I+D+++ +
Sbjct: 312 GSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 362
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 47.2 bits (110), Expect = 2e-06
Identities = 24/259 (9%), Positives = 63/259 (24%), Gaps = 13/259 (5%)
Query: 170 VDEITAAFSVAFNPTGTKI-FAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAI 228
V+ I+ A+N T+I N V +++ G + + LK + G ++ +
Sbjct: 7 VEPIS---CHAWNKDRTQIAICPNNHEVHIYEKS--GNKWVQVHELKEHN----GQVTGV 57
Query: 229 AFSPTHTGMLAIGSYSQTSAIY-REDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKD 287
++P + + + ++ + ++ + + G
Sbjct: 58 DWAPDSN-RIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGS 116
Query: 288 PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWI 347
I + + + + D P+ L G D I+ +
Sbjct: 117 RVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVE 176
Query: 348 SGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFEDLHL-SGDENCVSVWSFLYASMM 406
++S ++ V + +
Sbjct: 177 ERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAV 236
Query: 407 ENADGINGCEFNCQSEHEN 425
E+
Sbjct: 237 ATLASETLPLLAVTFITES 255
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 49.8 bits (117), Expect = 3e-07
Identities = 33/320 (10%), Positives = 76/320 (23%), Gaps = 17/320 (5%)
Query: 55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGIS-YDVNACSLAKDQDSYEAS 113
I FL + DGS +S + + + +D D + +
Sbjct: 41 IGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIE-LPDA 99
Query: 114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTG--LLRCTYRAYDAVD 171
G + P + +F + + + D +
Sbjct: 100 PRFLVGTYPWMTSLTPDGK-----TLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIF 154
Query: 172 EITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFS 231
G+ + H E + Q +
Sbjct: 155 PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWP-T 213
Query: 232 PTHTGMLAIGSYSQTSAIYREDNMELLYVLHG-QEGGVTHVQFSRDGNYLYTGGRKDPYI 290
T S + + + G + GG V + R + +Y +
Sbjct: 214 YTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEW 273
Query: 291 LCWDLRKAVQVV----YKLYRSSEHTNQRILFDIEPSGRHL--GTGGQDGLVHIYDLQTG 344
+ V V+ + E ++ ++ + L D ++I+D ++G
Sbjct: 274 RHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESG 333
Query: 345 KWISGFQAAADTVNGFSFHP 364
+ + +
Sbjct: 334 EELRSVNQLGHGPQVITTAD 353
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.1 bits (115), Expect = 5e-07
Identities = 26/169 (15%), Positives = 60/169 (35%), Gaps = 10/169 (5%)
Query: 212 STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHV 271
+TL+G+ +++ + F + + G+ + +Y N + L L G +GGV +
Sbjct: 6 TTLRGHMTS---VITCLQFEDNY---VITGADDKMIRVYDSINKKFLLQLSGHDGGVWAL 59
Query: 272 QFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGG 331
+++ G L +G + + ++ T + + + +++ TG
Sbjct: 60 KYAHGG-ILVSGSTDRTVRVWDIKK---GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGS 115
Query: 332 QDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPV 380
+D +H++ L + D F P V
Sbjct: 116 RDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASV 164
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.4 bits (113), Expect = 9e-07
Identities = 40/337 (11%), Positives = 89/337 (26%), Gaps = 22/337 (6%)
Query: 68 WSPDGSSFLTSSEDKTLRIFSLPE-------NGISYDVNACSLAKDQDSYEASLVVTEGE 120
+ + +T ++DK +R++ +G V A A S T
Sbjct: 19 LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRV 78
Query: 121 SVYDFCWFPHMSASDPTSC------------VFASTTRDHPIHLWDATTGLLRCTYRAYD 168
H+ ++ + +RD+ +H+W +
Sbjct: 79 WDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEH 138
Query: 169 AVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAI 228
+ G + + + + + +
Sbjct: 139 DYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILS 198
Query: 229 AFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDP 288
+ + + + + + + + +G+ + G +
Sbjct: 199 GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVS 258
Query: 289 YILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWI- 347
+R Y S HTN + S L G + +IY+L++GK +
Sbjct: 259 AAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNIL-VSGSENQFNIYNLRSGKLVH 317
Query: 348 SGFQAAADTVNGFSFHP-FLPMAASSSGHRRFPVDDF 383
+ AD + +F L A G + DF
Sbjct: 318 ANILKDADQIWSVNFKGKTLVAAVEKDGQSFLEILDF 354
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.8 bits (96), Expect = 1e-04
Identities = 12/87 (13%), Positives = 26/87 (29%)
Query: 320 IEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFP 379
++ ++ TG D ++ +YD K++ V + + + S+
Sbjct: 19 LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRV 78
Query: 380 VDDFEDLHLSGDENCVSVWSFLYASMM 406
D + E S L
Sbjct: 79 WDIKKGCCTHVFEGHNSTVRCLDIVEY 105
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 48.7 bits (114), Expect = 7e-07
Identities = 20/194 (10%), Positives = 40/194 (20%), Gaps = 8/194 (4%)
Query: 106 DQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTG--LLRCT 163
Q + + + + + A D S + D
Sbjct: 158 MQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVV 217
Query: 164 YRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAG 223
+ + + P AG ++ P + E
Sbjct: 218 SKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSIL 277
Query: 224 IMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTG 283
I S Y ++ + +T ++ S D +
Sbjct: 278 IYSVPVHGEFAA-YYQGAPEKGVLLKYDVKTRKV----TEVKNNLTDLRLSADRKTVMVR 332
Query: 284 GRKDPYILCWDLRK 297
D I + L K
Sbjct: 333 KD-DGKIYTFPLEK 345
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 47.9 bits (112), Expect = 1e-06
Identities = 21/334 (6%), Positives = 56/334 (16%), Gaps = 29/334 (8%)
Query: 66 IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDF 125
++ D + + A+ + ++ + F
Sbjct: 48 VRRGGDTKVAFIHGTREGDFLGIYDYRT--------GKAEKFEENLGNVFAMGVDRNGKF 99
Query: 126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG 185
+ T + T + A
Sbjct: 100 AVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQ 159
Query: 186 TKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ 245
D+ + + + S +
Sbjct: 160 AIHVYDMEGRKIFAATTENSHDYAPAFDADSKN---------LYYLSYRSL---DPSPDR 207
Query: 246 TSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQV--VY 303
+ + + +V+ G + G + V
Sbjct: 208 VVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYR 267
Query: 304 KLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFH 363
+ + + + G++ YD++T K + +
Sbjct: 268 MIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV----TEVKNNLTDLRLS 323
Query: 364 PFLPMAASSSGHRRFPVDDFEDLHLSGDENCVSV 397
+ E DE V
Sbjct: 324 ADRKTVMVRKDDGKIYTFPLEK---PEDERTVET 354
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.4 bits (108), Expect = 3e-06
Identities = 20/158 (12%), Positives = 45/158 (28%), Gaps = 1/158 (0%)
Query: 264 QEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKA-VQVVYKLYRSSEHTNQRILFDIEP 322
Q TH+ + N + K ++ C D + V V + + F
Sbjct: 16 QRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIK 75
Query: 323 SGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDD 382
++L +G + G V ++ K + + + P ++ G R V +
Sbjct: 76 GSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGE 135
Query: 383 FEDLHLSGDENCVSVWSFLYASMMENADGINGCEFNCQ 420
D + + + + +
Sbjct: 136 GRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPM 173
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.9 bits (91), Expect = 4e-04
Identities = 37/281 (13%), Positives = 75/281 (26%), Gaps = 29/281 (10%)
Query: 66 IKWSPDGSSFL--TSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVY 123
+K+SP S + E + ++ + S V ++ Q +
Sbjct: 69 VKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAG---------PIS 119
Query: 124 DFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNP 183
D W + RD+ +G +
Sbjct: 120 DISWDF-----EGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMR 174
Query: 184 TGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY 243
+ T G + D + Q + + FSP +
Sbjct: 175 SMTVGDDGSVVFYQGPPFKFSASDRTHH--------KQGSFVRDVEFSPDSGEFVITVGS 226
Query: 244 SQTSAIYREDNMELLYVLHGQEGGVTHVQF---SRDGNYLYTGGRKDPYILCWDLRKAVQ 300
+ + + + E L + + V F D T G D I WD+ + +
Sbjct: 227 DRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGA-DATIRVWDVTTS-K 284
Query: 301 VVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDL 341
V K + + + + + + DG ++ Y+L
Sbjct: 285 CVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.0 bits (107), Expect = 4e-06
Identities = 47/290 (16%), Positives = 88/290 (30%), Gaps = 34/290 (11%)
Query: 68 WSPDGSSFLTSSEDKTLRIFSL--------------PENGISYDVNACSLAKDQDSYEAS 113
D ++ D T++I+ + YD +
Sbjct: 21 LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVW 80
Query: 114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEI 173
V T + + + + ++D I +WD + V
Sbjct: 81 DVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASP--TDITLRRVLVGHR 138
Query: 174 TAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPT 233
A V F+ +G +++++V++ E TL G+K G IA
Sbjct: 139 AAVNVVDFDDKYIVSASG-DRTIKVWNT----STCEFVRTLNGHKRG-------IACLQY 186
Query: 234 HTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCW 293
++ GS T ++ + L VL G E D + + G D I W
Sbjct: 187 RDRLVVSGSSDNTIRLWDIECGACLRVLEGHE--ELVRCIRFDNKRIVS-GAYDGKIKVW 243
Query: 294 DLRKAVQVVYKLYRSSEHT---NQRILFDIEPSGRHLGTGGQDGLVHIYD 340
DL A+ T + +F ++ + + D + I+D
Sbjct: 244 DLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.5 bits (85), Expect = 0.002
Identities = 8/67 (11%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 302 VYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFS 361
+ +++ SE + + ++ ++ + + +G +D + I+D T + +V
Sbjct: 5 LQRIHCRSETS--KGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQ 62
Query: 362 FHPFLPM 368
+ + +
Sbjct: 63 YDERVII 69
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.7 bits (83), Expect = 0.004
Identities = 32/244 (13%), Positives = 71/244 (29%), Gaps = 23/244 (9%)
Query: 135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNK 194
S RD+ I +WD T + + SV ++ +
Sbjct: 22 QYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTG--------SVLCLQYDERVIITGSS 73
Query: 195 SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN 254
V + + + + + +A+ + + I
Sbjct: 74 DSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLR-- 131
Query: 255 MELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQ 314
VL G V V F +G D I W+ V + + ++
Sbjct: 132 ----RVLVGHRAAVNVVDFDDKYIVSASG---DRTIKVWNTSTCEFVR------TLNGHK 178
Query: 315 RILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSG 374
R + ++ R + +G D + ++D++ G + + + V F ++ + G
Sbjct: 179 RGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDG 238
Query: 375 HRRF 378
+
Sbjct: 239 KIKV 242
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 46.1 bits (108), Expect = 5e-06
Identities = 33/278 (11%), Positives = 63/278 (22%), Gaps = 10/278 (3%)
Query: 129 PHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKI 188
H+S + RD I + D ++ + S
Sbjct: 64 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYT 123
Query: 189 FAG--YNKSVRVFDVHRP---GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGML-AIGS 242
AG + + D + T+ ++AI S H + +
Sbjct: 124 IAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE 183
Query: 243 YSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVV 302
+ + +D L G + + Y T + D +
Sbjct: 184 TGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSA 243
Query: 303 YKLYRSSEHTNQRILFDIEPSGRHLGTG-GQDGLVHIYDLQTGKWISGFQAAADTVNGFS 361
+ H + F G T DG + + Q A V
Sbjct: 244 LVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHP---QYAWKKVAELQ 300
Query: 362 FHPFLPMAASSSGHRRFPVDDFEDLHLSGDENCVSVWS 399
+ + D + V+V+
Sbjct: 301 GQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFD 338
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 41.1 bits (95), Expect = 2e-04
Identities = 29/157 (18%), Positives = 48/157 (30%), Gaps = 7/157 (4%)
Query: 267 GVTHVQFSRDGNYLYTGGRKDPYILCWDL-RKAVQVVYKLYRSSEHTNQRILFDIEPSGR 325
V + S G YL GR D I DL K V ++ E + R
Sbjct: 63 AVHISRMSASGRYLLVIGR-DARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDR 121
Query: 326 HL-GTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHP--FLPMAASSSGHRRFPVDD 382
+ I D +T + TV+ ++HP + +S H F V+
Sbjct: 122 YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNV 181
Query: 383 FEDLHLSGDENCVSVWSFLYASMMENADGINGCEFNC 419
E + L + + A + ++
Sbjct: 182 KETGKVL--LVNYKDIDNLTVTSIGAAPFLADGGWDS 216
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 43.8 bits (102), Expect = 2e-05
Identities = 24/303 (7%), Positives = 57/303 (18%), Gaps = 31/303 (10%)
Query: 58 IPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVT 117
FL GS F +S R + + D + +
Sbjct: 62 SLGAFLSLAVAGHSGSDFALASTSFA-RSAKGKRTDYVEVFDPVTFLPIAD-----IELP 115
Query: 118 EGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAF 177
+ + ++C+ +A
Sbjct: 116 DAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGA---------SDDQLTKSAS 166
Query: 178 SVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGM 237
+P + + Q A + +
Sbjct: 167 CFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGM-L 225
Query: 238 LAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRK 297
+ + S + + G E G F G + + I+ +
Sbjct: 226 VWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEH 285
Query: 298 AVQVVY-------------KLYRSSEHTNQRILFDIEPSGRHL--GTGGQDGLVHIYDLQ 342
+ + + + + G ++ IYD
Sbjct: 286 SRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAA 345
Query: 343 TGK 345
+ +
Sbjct: 346 SDQ 348
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 43.1 bits (99), Expect = 3e-05
Identities = 27/290 (9%), Positives = 66/290 (22%), Gaps = 24/290 (8%)
Query: 66 IKWSPDGSSFLTSSEDKTLRIFSLP--------ENGISYDVNACSLAKDQDSYEAS---- 113
+ S DG + ++ + + + + + + + D + S
Sbjct: 18 LSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDH 77
Query: 114 --LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVD 171
+V G V + +S P ++ +
Sbjct: 78 LKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISY 137
Query: 172 EITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFS 231
+ VA + + G S E + + + + AF
Sbjct: 138 NSS---CVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFL 194
Query: 232 PTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYIL 291
+ N G D ++
Sbjct: 195 VATDQS-----RKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVI 249
Query: 292 CWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDL 341
W++ K + H + I + + + GQD + +++
Sbjct: 250 VWNMNKPSDH--PIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 41.5 bits (95), Expect = 1e-04
Identities = 16/165 (9%), Positives = 38/165 (23%), Gaps = 3/165 (1%)
Query: 256 ELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQR 315
+ V +G +T + S DG L++ + +I WD+
Sbjct: 3 SIDQVRYGHNKAITALSSSADGKTLFSADA-EGHINSWDISTG-ISNRVFPDVHATMITG 60
Query: 316 ILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGH 375
I + + +V + + G + +A ++
Sbjct: 61 IKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYK 120
Query: 376 RRFPVDDFEDLHLSGDENCVSVWSFLYASMMENADGINGCEFNCQ 420
+ S + G + +
Sbjct: 121 HIAIYSHGKLTE-VPISYNSSCVALSNDKQFVAVGGQDSKVHVYK 164
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 40.7 bits (93), Expect = 2e-04
Identities = 23/294 (7%), Positives = 72/294 (24%), Gaps = 24/294 (8%)
Query: 66 IKWSPDGSSFLTSSEDKTLRIFSLPEN-------GISYDVNACSLAKDQD-----SYEAS 113
+ +P G + ++ + S+ + +
Sbjct: 23 LGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGN 81
Query: 114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEI 173
+ + + S P + + + + +
Sbjct: 82 VRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERF-GHVFLFDTGTSNG 140
Query: 174 TAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPT 233
+ + + + D + K + ++ ++P
Sbjct: 141 NLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPD 200
Query: 234 HTGMLAIGSYSQTSAIYREDN------MELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKD 287
+ + G D + G V + +S DG + + D
Sbjct: 201 GSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASAS-AD 259
Query: 288 PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDL 341
I W++ +V + + +Q++ I + + L + +G ++ +
Sbjct: 260 KTIKIWNVATL-KVEKTIPVGTRIEDQQL--GIIWTKQALVSISANGFINFVNP 310
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 38.0 bits (86), Expect = 0.001
Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 3/71 (4%)
Query: 311 HTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKW---ISGFQAAADTVNGFSFHPFLP 367
H+ P G + + D + I+++ T K I D G +
Sbjct: 237 HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQAL 296
Query: 368 MAASSSGHRRF 378
++ S++G F
Sbjct: 297 VSISANGFINF 307
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 36.8 bits (83), Expect = 0.003
Identities = 10/83 (12%), Positives = 23/83 (27%), Gaps = 6/83 (7%)
Query: 211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTH 270
+ +L G A + +P + + + ++ + T
Sbjct: 9 FPSLPRTARGTA---VVLGNTPAGD-KIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTV 63
Query: 271 VQFSRDGNYLYTGGRKDPYILCW 293
+ S G Y +G + W
Sbjct: 64 AKTSPSGYYCASGDV-HGNVRIW 85
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 36.8 bits (83), Expect = 0.004
Identities = 18/160 (11%), Positives = 40/160 (25%), Gaps = 6/160 (3%)
Query: 264 QEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPS 323
G + + G+ + Y + +EH++Q + PS
Sbjct: 16 ARGTAVVLGNTPAGDKIQYCNGTSVYT--VPVGSLTDT----EIYTEHSHQTTVAKTSPS 69
Query: 324 GRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDF 383
G + +G G V I+D I + ++
Sbjct: 70 GYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGH 129
Query: 384 EDLHLSGDENCVSVWSFLYASMMENADGINGCEFNCQSEH 423
L +G N + ++ + ++
Sbjct: 130 VFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDN 169
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.4 bits (87), Expect = 0.001
Identities = 28/273 (10%), Positives = 73/273 (26%), Gaps = 14/273 (5%)
Query: 73 SSFLTSSEDKTLRIFSLP--ENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH 130
+ ++ S D + +S S + + +K Q+ S T + F
Sbjct: 22 NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGS 81
Query: 131 MS---ASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTK 187
+++ T D + L T +++ + VA
Sbjct: 82 QPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGN 141
Query: 188 IFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTS 247
+ S K S + + + + +
Sbjct: 142 TIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDL----QSREVK 197
Query: 248 AIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYR 307
+ + + + + + + TG D I + +++ ++++ L
Sbjct: 198 TSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSL-DTNIFIYSVKRPMKIIKAL-- 254
Query: 308 SSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYD 340
+ H + E L + G D + ++
Sbjct: 255 -NAHKDGVNNLLWETPST-LVSSGADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.0 bits (86), Expect = 0.001
Identities = 7/80 (8%), Positives = 26/80 (32%), Gaps = 6/80 (7%)
Query: 123 YDFCWFPHMSASDPTSCVFASTTRDHPIHLWD-ATTGLLRCTYRAYDAVDEITAAFSVAF 181
+ + + A+ + D I ++ + A+ ++ +
Sbjct: 212 SWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKD-----GVNNLLW 266
Query: 182 NPTGTKIFAGYNKSVRVFDV 201
T + +G + ++ ++V
Sbjct: 267 ETPSTLVSSGADACIKRWNV 286
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 430 | |||
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 100.0 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.98 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.97 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.97 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.97 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.96 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.96 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.96 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.95 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.95 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.94 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.94 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.94 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.92 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.92 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.91 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.89 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.88 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.87 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.85 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.85 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.83 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.83 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.83 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.67 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.66 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.63 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.6 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.48 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.47 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.47 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.39 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.39 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.37 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.33 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.32 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.29 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.28 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.27 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.23 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.23 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.21 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.19 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.03 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 99.0 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.94 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.88 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.62 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.61 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.49 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 98.43 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 98.35 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 98.25 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 98.23 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 98.14 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 98.02 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 98.01 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.95 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.9 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.83 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 97.79 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.74 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.58 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.53 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 97.51 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 97.38 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.3 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.23 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 96.85 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 96.5 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 96.44 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.29 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 96.16 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 96.13 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 96.1 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.1 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 94.97 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 94.17 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 93.63 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 92.24 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 88.46 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 88.18 |
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=9.4e-45 Score=319.36 Aligned_cols=287 Identities=14% Similarity=0.202 Sum_probs=236.4
Q ss_pred ceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecccc
Q 014125 52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (430)
Q Consensus 52 ~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (430)
.++.+ +|...|++++|+|+|++||||+ ||.|+|||+.+...... ........|...|.+++|
T Consensus 44 ~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~------------~~~~~~~~h~~~I~~v~~---- 105 (337)
T d1gxra_ 44 QINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSP------------VSQLDCLNRDNYIRSCKL---- 105 (337)
T ss_dssp EEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSC------------SEEEECSCTTSBEEEEEE----
T ss_pred EEEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccce------------eEEeeecCCCCcEEEEEE----
Confidence 34444 8999999999999999999998 89999999986543211 111223457789999999
Q ss_pred CccCCCCceEEEEeCCCcEEEEeccCCc--eeeeeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCCcc
Q 014125 132 SASDPTSCVFASTTRDHPIHLWDATTGL--LRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDF 208 (430)
Q Consensus 132 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~ 208 (430)
+|++++|++|+.||.|++||+.... ....+..+.. .+.+++|+|++.++++ +.++.|++|++...
T Consensus 106 ---s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~---- 173 (337)
T d1gxra_ 106 ---LPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAP-----ACYALAISPDSKVCFSCCSDGNIAVWDLHNQ---- 173 (337)
T ss_dssp ---CTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSS-----CEEEEEECTTSSEEEEEETTSCEEEEETTTT----
T ss_pred ---cCCCCEEEEeecccccccccccccccccccccccccc-----ccccccccccccccccccccccccccccccc----
Confidence 7789999999999999999987554 3344444443 8889999999999985 58999999999763
Q ss_pred cccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCC
Q 014125 209 EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDP 288 (430)
Q Consensus 209 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~ 288 (430)
........|...+.+++|++ .+..+++++.|+.|++||+++++.+..+. |...|.+++|+|++++|++++ .|+
T Consensus 174 ----~~~~~~~~~~~~v~~l~~s~-~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~-~d~ 246 (337)
T d1gxra_ 174 ----TLVRQFQGHTDGASCIDISN-DGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGM-ESS 246 (337)
T ss_dssp ----EEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEE-TTS
T ss_pred ----cccccccccccccccccccc-cccccccccccccccccccccceeecccc-cccceEEEEEcccccccceec-ccc
Confidence 22223356788899999999 66799999999999999999999887775 788999999999999999999 999
Q ss_pred eEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcE
Q 014125 289 YILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPM 368 (430)
Q Consensus 289 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 368 (430)
.+++||++...... ...|...|.+++|+|++++|++|+.||.|++||+.+++.+..+. |.+.|.+++|+|++++
T Consensus 247 ~i~i~d~~~~~~~~-----~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~d~~~ 320 (337)
T d1gxra_ 247 NVEVLHVNKPDKYQ-----LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKY 320 (337)
T ss_dssp CEEEEETTSSCEEE-----ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSCE
T ss_pred cccccccccccccc-----ccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc-CCCCEEEEEEeCCCCE
Confidence 99999999875432 24688899999999999999999999999999999999887765 7889999999999999
Q ss_pred EEEeeCCceeeec
Q 014125 369 AASSSGHRRFPVD 381 (430)
Q Consensus 369 l~s~~~d~~~~vw 381 (430)
|++++.|+.|+||
T Consensus 321 l~t~s~D~~I~vW 333 (337)
T d1gxra_ 321 IVTGSGDKKATVY 333 (337)
T ss_dssp EEEEETTSCEEEE
T ss_pred EEEEeCCCeEEEE
Confidence 9999854433333
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=3.9e-44 Score=315.55 Aligned_cols=291 Identities=14% Similarity=0.169 Sum_probs=238.0
Q ss_pred cceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccc
Q 014125 51 NQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH 130 (430)
Q Consensus 51 ~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 130 (430)
+..+++.||.+.|++|+|+|++++||||+.||+|+|||+.+++... ....|...|.+++|
T Consensus 46 ~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~-----------------~~~~~~~~v~~v~~--- 105 (340)
T d1tbga_ 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVH-----------------AIPLRSSWVMTCAY--- 105 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEE-----------------EEECSCSCEEEEEE---
T ss_pred eeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEE-----------------EEecccccEEeeEe---
Confidence 4567899999999999999999999999999999999998764322 22346689999999
Q ss_pred cCccCCCCceEEEEeCCCcEEEEeccCCcee----eeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCC
Q 014125 131 MSASDPTSCVFASTTRDHPIHLWDATTGLLR----CTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGR 206 (430)
Q Consensus 131 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~ 206 (430)
+|++.++++|+.|+.+++|+....... ..+..+.. .........+........+.....+.......
T Consensus 106 ----~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (340)
T d1tbga_ 106 ----APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG-----YLSCCRFLDDNQIVTSSGDTTCALWDIETGQQ 176 (340)
T ss_dssp ----CTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSS-----CEEEEEEEETTEEEEEETTTEEEEEETTTTEE
T ss_pred ----eccceeeeeecccceeecccccccccccccceecccccc-----cccccccccccccccccccccccccccccccc
Confidence 778999999999999999998765432 22333222 34444454454445567888888888765311
Q ss_pred cccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecC
Q 014125 207 DFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRK 286 (430)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 286 (430)
......+...+....+.+ ...++++|+.|+.|++||+++++.+..+.+|...|++++|+|++++|++++ .
T Consensus 177 --------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s-~ 246 (340)
T d1tbga_ 177 --------TTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS-D 246 (340)
T ss_dssp --------EEEEECCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-T
T ss_pred --------cccccccceeEeeecccc-ccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEe-C
Confidence 111234456688888888 777999999999999999999999999999999999999999999999999 9
Q ss_pred CCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCC
Q 014125 287 DPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFL 366 (430)
Q Consensus 287 d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 366 (430)
|+.|++||++...... ......+...+.+++|+|++++|++|+.||.|++||+.+++.+..+.+|.++|++++|+|++
T Consensus 247 d~~i~~~~~~~~~~~~--~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~ 324 (340)
T d1tbga_ 247 DATCRLFDLRADQELM--TYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDG 324 (340)
T ss_dssp TSCEEEEETTTTEEEE--EECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS
T ss_pred CCeEEEEeeccccccc--ccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCC
Confidence 9999999999875443 22335667789999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeeCCceeeecC
Q 014125 367 PMAASSSGHRRFPVDD 382 (430)
Q Consensus 367 ~~l~s~~~d~~~~vw~ 382 (430)
++|++|+.||.|+|||
T Consensus 325 ~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 325 MAVATGSWDSFLKIWN 340 (340)
T ss_dssp SCEEEEETTSCEEEEC
T ss_pred CEEEEEccCCEEEEeC
Confidence 9999999776666664
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.2e-43 Score=307.16 Aligned_cols=285 Identities=19% Similarity=0.273 Sum_probs=247.0
Q ss_pred ecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCcc
Q 014125 55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS 134 (430)
Q Consensus 55 ~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 134 (430)
++.||.++|++|+|+|++++||||+.||+|+|||+.+++....+ ..|...|.+++|
T Consensus 12 ~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~-----------------~~h~~~V~~~~~------- 67 (317)
T d1vyhc1 12 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTL-----------------KGHTDSVQDISF------- 67 (317)
T ss_dssp EEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEE-----------------CCCSSCEEEEEE-------
T ss_pred EEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEE-----------------eCCCCcEEEEee-------
Confidence 68899999999999999999999999999999999877543322 245678999999
Q ss_pred CCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCccccccc
Q 014125 135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYST 213 (430)
Q Consensus 135 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~ 213 (430)
++++.+++++..++.+.+|+....+....+..+.. .+.++.|+|++..++ ++.|+.+++||++.+..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~------- 135 (317)
T d1vyhc1 68 DHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDH-----NVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC------- 135 (317)
T ss_dssp CTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSS-----CEEEEEECSSSSEEEEEETTSEEEEEETTTCCE-------
T ss_pred ecccccccccccccccccccccccccccccccccc-----cceeeeccCCCceEEeeccCcceeEeeccccee-------
Confidence 77899999999999999999988887776666554 888999999999988 45899999999987421
Q ss_pred ccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCC----------------
Q 014125 214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDG---------------- 277 (430)
Q Consensus 214 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~---------------- 277 (430)
...+.+|...+.+++|+| ++.+|++++.|+.|++|+..+++....+..|...+.+++|+|++
T Consensus 136 -~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (317)
T d1vyhc1 136 -VKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKS 213 (317)
T ss_dssp -EEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC----
T ss_pred -eeEEccCCCcceeeeccc-CCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeee
Confidence 122356778899999999 67799999999999999999999999999999999999998864
Q ss_pred ----CEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccc
Q 014125 278 ----NYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAA 353 (430)
Q Consensus 278 ----~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 353 (430)
.++++++ .|+.|++||++++... ..+ .+|...|.+++|+|++++|++|+.||.|++||+.+++++..+.+|
T Consensus 214 ~~~~~~~~~~~-~d~~i~~~~~~~~~~~-~~~---~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h 288 (317)
T d1vyhc1 214 GKPGPFLLSGS-RDKTIKMWDVSTGMCL-MTL---VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAH 288 (317)
T ss_dssp ---CCEEEEEE-TTSEEEEEETTTTEEE-EEE---ECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECC
T ss_pred ccCCceeEecc-CCCEEEEEECCCCcEE-EEE---eCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCC
Confidence 4677888 9999999999987543 232 468899999999999999999999999999999999999999999
Q ss_pred cCCeeEEEEcCCCcEEEEeeCCceeeecC
Q 014125 354 ADTVNGFSFHPFLPMAASSSGHRRFPVDD 382 (430)
Q Consensus 354 ~~~v~~~~~~~~~~~l~s~~~d~~~~vw~ 382 (430)
.+.|++++|+|++++|++++.||.|+|||
T Consensus 289 ~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 289 EHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp SSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 99999999999999999999777777664
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=9.7e-44 Score=319.22 Aligned_cols=304 Identities=19% Similarity=0.297 Sum_probs=234.0
Q ss_pred cccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccc-cCcccceeeecCCCeeeeeeeccccCcc
Q 014125 56 SSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKD-QDSYEASLVVTEGESVYDFCWFPHMSAS 134 (430)
Q Consensus 56 ~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 134 (430)
..+|.+.|+||+|||||++||+|+ |++|+|||+.+++....+........ ...........+...|.+++|
T Consensus 58 ~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~------- 129 (388)
T d1erja_ 58 SLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCF------- 129 (388)
T ss_dssp EEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEE-------
T ss_pred eCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEE-------
Confidence 347999999999999999999987 89999999998876554443322111 111122233456778999999
Q ss_pred CCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCccccccc
Q 014125 135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYST 213 (430)
Q Consensus 135 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~ 213 (430)
+|++++|++|+.||.|++||...++....+..+.. .|.++.+++++..++ ++.++.+++||.......
T Consensus 130 s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~------ 198 (388)
T d1erja_ 130 SPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQ-----DIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCS------ 198 (388)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS-----CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE------
T ss_pred CCCCCcceecccccccccccccccccccccccccc-----cccccccccccccccccccceeeeeeeccccccc------
Confidence 77899999999999999999999998888877665 899999999998888 458999999999763211
Q ss_pred ccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEe-------eccccCeEEEEEccCCCEEEEEecC
Q 014125 214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVL-------HGQEGGVTHVQFSRDGNYLYTGGRK 286 (430)
Q Consensus 214 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~~~~ 286 (430)
.. ..+.....++.+.+.++.+|++|+.|+.|++||..++.....+ .+|...|.+++|+|++++|++++ .
T Consensus 199 --~~-~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~ 274 (388)
T d1erja_ 199 --LT-LSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS-L 274 (388)
T ss_dssp --EE-EECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEE-T
T ss_pred --cc-cccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEE-C
Confidence 11 1223345667777767889999999999999999988766554 35788999999999999999999 9
Q ss_pred CCeEEEEeCCCCceEEE--------EeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCee
Q 014125 287 DPYILCWDLRKAVQVVY--------KLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVN 358 (430)
Q Consensus 287 d~~i~i~d~~~~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~ 358 (430)
||.|++||+++...... .......|...|.+++|+|++++|++|+.||.|++||+.+++++..+++|.+.|.
T Consensus 275 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~ 354 (388)
T d1erja_ 275 DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVI 354 (388)
T ss_dssp TSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred CCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEE
Confidence 99999999986543211 1112246788999999999999999999999999999999999999999999999
Q ss_pred EEEE------cCCCcEEEEeeCCceeeecC
Q 014125 359 GFSF------HPFLPMAASSSGHRRFPVDD 382 (430)
Q Consensus 359 ~~~~------~~~~~~l~s~~~d~~~~vw~ 382 (430)
++++ +|++++|++|+.||.|+||+
T Consensus 355 ~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~ 384 (388)
T d1erja_ 355 SVAVANGSSLGPEYNVFATGSGDCKARIWK 384 (388)
T ss_dssp EEEECSSCTTCTTCEEEEEEETTSEEEEEE
T ss_pred EEEEecCcccCCCCCEEEEEeCCCEEEEEe
Confidence 9875 67888999988654444443
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=5.1e-42 Score=297.48 Aligned_cols=288 Identities=15% Similarity=0.166 Sum_probs=230.9
Q ss_pred ccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCC
Q 014125 57 SIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP 136 (430)
Q Consensus 57 ~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 136 (430)
..+++.+..++++|+|+.||.++ ++.|.+|++.+.... .....|...|.+++| +|
T Consensus 14 ~~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~-----------------~~~~~H~~~v~~~~~-------sp 68 (311)
T d1nr0a1 14 RTARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDT-----------------EIYTEHSHQTTVAKT-------SP 68 (311)
T ss_dssp CCCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCC-----------------EEECCCSSCEEEEEE-------CT
T ss_pred CCCCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCcee-----------------EEEcCCCCCEEEEEE-------eC
Confidence 34455677899999999999886 557999999865332 233457789999999 77
Q ss_pred CCceEEEEeCCCcEEEEeccCCceee--eeecccccccccceEEEEECCCCcEEEEE---cCCeEEEEEcCCCCCccccc
Q 014125 137 TSCVFASTTRDHPIHLWDATTGLLRC--TYRAYDAVDEITAAFSVAFNPTGTKIFAG---YNKSVRVFDVHRPGRDFEKY 211 (430)
Q Consensus 137 ~~~~l~~~~~dg~i~vwd~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---~d~~i~v~d~~~~~~~~~~~ 211 (430)
+|++|++|+.||+|++||+.++.... .+..+.. +|.+++|+|++++++++ .+..+++|+++..
T Consensus 69 ~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~-----~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~------- 136 (311)
T d1nr0a1 69 SGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSG-----PVKDISWDSESKRIAAVGEGRERFGHVFLFDTG------- 136 (311)
T ss_dssp TSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSS-----CEEEEEECTTSCEEEEEECCSSCSEEEEETTTC-------
T ss_pred CCCeEeccccCceEeeeeeeccccccccccccccC-----ccccccccccccccccccccccccccccccccc-------
Confidence 89999999999999999999876543 3444443 89999999999998854 3466999999863
Q ss_pred ccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEE
Q 014125 212 STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYIL 291 (430)
Q Consensus 212 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~ 291 (430)
.....+.+|...|++++|+|++..+|++|+.|+.|++||+++++....+..|...|++++|+|++++|++++ .|+.|+
T Consensus 137 -~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~-~d~~v~ 214 (311)
T d1nr0a1 137 -TSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTG-GDGTIV 214 (311)
T ss_dssp -CBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEE
T ss_pred -cccccccccccccccccccccceeeecccccccccccccccccccccccccccccccccccCcccccccccc-cccccc
Confidence 223345678889999999997777799999999999999999999999999999999999999999999999 999999
Q ss_pred EEeCCCCceEEEEe---ecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccC-CeeEEEEcCCCc
Q 014125 292 CWDLRKAVQVVYKL---YRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAAD-TVNGFSFHPFLP 367 (430)
Q Consensus 292 i~d~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~ 367 (430)
+||+++........ ....+|...|++++|+|++++|++|+.||.|+|||+++++++.++..|.. ....+.+.+++.
T Consensus 215 ~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~ 294 (311)
T d1nr0a1 215 LYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQ 294 (311)
T ss_dssp EEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSS
T ss_pred ccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCC
Confidence 99999875443211 12245788999999999999999999999999999999999998876654 223334444556
Q ss_pred EEEEeeCCceeeecCC
Q 014125 368 MAASSSGHRRFPVDDF 383 (430)
Q Consensus 368 ~l~s~~~d~~~~vw~~ 383 (430)
.|++++.||.|++||.
T Consensus 295 ~l~s~s~dG~i~~wd~ 310 (311)
T d1nr0a1 295 ALVSISANGFINFVNP 310 (311)
T ss_dssp CEEEEETTCCEEEEET
T ss_pred EEEEEECCCEEEEEeC
Confidence 7888886666666654
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=2.5e-41 Score=292.30 Aligned_cols=288 Identities=12% Similarity=0.125 Sum_probs=218.4
Q ss_pred ceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecccc
Q 014125 52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (430)
Q Consensus 52 ~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (430)
..+++.||.+.|++|+|+|||++||||+.||+|++||+.+++.... ....|...|.+++|
T Consensus 4 ~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~----------------~~~~h~~~v~~v~~---- 63 (299)
T d1nr0a2 4 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRV----------------FPDVHATMITGIKT---- 63 (299)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEC----------------SSCSCSSCEEEEEE----
T ss_pred cceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEE----------------EcCCCCCcEEEEEe----
Confidence 4568999999999999999999999999999999999987643221 22346678999999
Q ss_pred CccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCccccc
Q 014125 132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKY 211 (430)
Q Consensus 132 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~ 211 (430)
+|++. +++++.|+.+++|+........... . ...+...+.+++|+|++.+++++.++.+++|+....
T Consensus 64 ---~~~g~-~~~~~~d~~v~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~------- 130 (299)
T d1nr0a2 64 ---TSKGD-LFTVSWDDHLKVVPAGGSGVDSSKA-V-ANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKL------- 130 (299)
T ss_dssp ---CTTSC-EEEEETTTEEEEECSSSSSSCTTSC-C-EEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEE-------
T ss_pred ---eccce-eecccceeeEEEeccCCcccccccc-c-cccccccccccccccccccccccccccccccccccc-------
Confidence 56675 5667789999999986543221111 0 011223778999999999999888999999996431
Q ss_pred ccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeE-EeeccccCeEEEEEccCCCEEEEEecCCCeE
Q 014125 212 STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLY-VLHGQEGGVTHVQFSRDGNYLYTGGRKDPYI 290 (430)
Q Consensus 212 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i 290 (430)
.. ......+.+++|+| ++.++++|+.||.|++||+++++... ....|...|++++|+|++++|++++ .|+.|
T Consensus 131 ~~-----~~~~~~~~~~~~s~-~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i 203 (299)
T d1nr0a2 131 TE-----VPISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATD-QSRKV 203 (299)
T ss_dssp EE-----EECSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEE-TTSCE
T ss_pred cc-----cccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccc
Confidence 01 11223478899999 67799999999999999998876543 3446889999999999999999999 99999
Q ss_pred EEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeec--ccccc-cCCeeEEEEcCCCc
Q 014125 291 LCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWIS--GFQAA-ADTVNGFSFHPFLP 367 (430)
Q Consensus 291 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~--~~~~~-~~~v~~~~~~~~~~ 367 (430)
++||+.+..... .......|...|++++|+|++++|++|+.||.|++||++++.... ....| ...|..+.| +++.
T Consensus 204 ~~~~~~~~~~~~-~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~ 281 (299)
T d1nr0a2 204 IPYSVANNFELA-HTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNET 281 (299)
T ss_dssp EEEEGGGTTEES-CCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETT
T ss_pred cccccccccccc-ccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCC
Confidence 999998764332 233345688999999999999999999999999999999765433 22333 345666665 5567
Q ss_pred EEEEeeCCceeeec
Q 014125 368 MAASSSGHRRFPVD 381 (430)
Q Consensus 368 ~l~s~~~d~~~~vw 381 (430)
+|++++.|+.|++|
T Consensus 282 ~l~s~s~D~~i~iW 295 (299)
T d1nr0a2 282 TIVSAGQDSNIKFW 295 (299)
T ss_dssp EEEEEETTSCEEEE
T ss_pred EEEEEeCCCEEEEE
Confidence 88888754444444
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.1e-39 Score=283.94 Aligned_cols=267 Identities=18% Similarity=0.271 Sum_probs=223.7
Q ss_pred eeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-Ec
Q 014125 114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GY 192 (430)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~ 192 (430)
....|...|.+++| +|++++|++|+ ||.|+|||+.++.....+.......|...|.+++|+|++++|++ +.
T Consensus 46 ~~~~H~~~V~~v~f-------s~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~ 117 (337)
T d1gxra_ 46 NTLNHGEVVCAVTI-------SNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGE 117 (337)
T ss_dssp EEECCSSCCCEEEE-------CSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEES
T ss_pred EECCCCCcEEEEEE-------CCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeec
Confidence 34578899999999 77999999997 89999999987654433333223344558999999999999985 58
Q ss_pred CCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEE
Q 014125 193 NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQ 272 (430)
Q Consensus 193 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~ 272 (430)
|+.|++||+...... .......|...+.+++|+| ++.++++++.++.|++|++.+++.......|...|.+++
T Consensus 118 dg~i~iwd~~~~~~~------~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~ 190 (337)
T d1gxra_ 118 ASTLSIWDLAAPTPR------IKAELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCID 190 (337)
T ss_dssp SSEEEEEECCCC--E------EEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred ccccccccccccccc------ccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccc
Confidence 999999998754321 1222356778899999999 677999999999999999999999989999999999999
Q ss_pred EccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccccc
Q 014125 273 FSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQA 352 (430)
Q Consensus 273 ~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 352 (430)
|++++..+++++ .|+.+++||++++.... . ..+...|.+++|+|++++|++|+.|+.|++||+++++.. ....
T Consensus 191 ~s~~~~~~~~~~-~d~~v~i~d~~~~~~~~-~----~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~ 263 (337)
T d1gxra_ 191 ISNDGTKLWTGG-LDNTVRSWDLREGRQLQ-Q----HDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHL 263 (337)
T ss_dssp ECTTSSEEEEEE-TTSEEEEEETTTTEEEE-E----EECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECC
T ss_pred cccccccccccc-ccccccccccccceeec-c----cccccceEEEEEcccccccceeccccccccccccccccc-cccc
Confidence 999999999999 99999999999875432 2 246788999999999999999999999999999988765 4556
Q ss_pred ccCCeeEEEEcCCCcEEEEeeCCceeeecCCCc------------------------cccccCCCcEEEEeecc
Q 014125 353 AADTVNGFSFHPFLPMAASSSGHRRFPVDDFED------------------------LHLSGDENCVSVWSFLY 402 (430)
Q Consensus 353 ~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~------------------------l~~~~~d~~i~~w~~~~ 402 (430)
|...|++++|+|++++|++++.|+.+++|+... |++++.|+.|++|++.+
T Consensus 264 ~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl~~ 337 (337)
T d1gxra_ 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEVIY 337 (337)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEEEC
T ss_pred cccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEEEC
Confidence 899999999999999999999999999995432 88889999999998753
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.5e-39 Score=289.80 Aligned_cols=246 Identities=16% Similarity=0.200 Sum_probs=195.5
Q ss_pred CCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCc
Q 014125 60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC 139 (430)
Q Consensus 60 ~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (430)
.++|+|++|+|||++||+|+.||.|+|||+.+++. ........|..+|.+++| +|+++
T Consensus 7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~---------------~~~~~l~gH~~~V~~l~f-------sp~~~ 64 (371)
T d1k8kc_ 7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW---------------VQVHELKEHNGQVTGVDW-------APDSN 64 (371)
T ss_dssp SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE---------------EEEEEEECCSSCEEEEEE-------ETTTT
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCE---------------EEEEEecCCCCCEEEEEE-------CCCCC
Confidence 47799999999999999999999999999875421 111223467889999999 66899
Q ss_pred eEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCCcccccccccCCC
Q 014125 140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFEKYSTLKGNK 218 (430)
Q Consensus 140 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~ 218 (430)
+|++|+.|+.|++||+.++.....+.... +...|.+++|+|+++.+++ +.|+.|++|++........ .....
T Consensus 65 ~l~s~s~D~~i~vWd~~~~~~~~~~~~~~---~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~----~~~~~ 137 (371)
T d1k8kc_ 65 RIVTCGTDRNAYVWTLKGRTWKPTLVILR---INRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWV----CKHIK 137 (371)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEEEECCC---CSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEE----EEEEC
T ss_pred EEEEEECCCeEEEEeeccccccccccccc---ccccccccccccccccceeecccCcceeeeeeccccccc----ccccc
Confidence 99999999999999998876655543322 2238999999999999985 5899999999876433221 12223
Q ss_pred CCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCc------------------eeeEEeeccccCeEEEEEccCCCEE
Q 014125 219 EGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM------------------ELLYVLHGQEGGVTHVQFSRDGNYL 280 (430)
Q Consensus 219 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~------------------~~~~~~~~~~~~i~~~~~~~~~~~l 280 (430)
..|...|.+++|+| ++.+|++|+.|++|++|+.... ........|...|.+++|+|++++|
T Consensus 138 ~~~~~~v~~v~~~p-~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 216 (371)
T d1k8kc_ 138 KPIRSTVLSLDWHP-NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRV 216 (371)
T ss_dssp TTCCSCEEEEEECT-TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEE
T ss_pred cccccccccccccc-cccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccc
Confidence 56778899999999 6779999999999999997542 2445566788899999999999999
Q ss_pred EEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEc
Q 014125 281 YTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDL 341 (430)
Q Consensus 281 ~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 341 (430)
++++ .|+.|++||+..+.... .+ ..|..+|.+++|+|++++|++|+ |+.+++|..
T Consensus 217 ~s~~-~d~~i~iwd~~~~~~~~-~~---~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~ 271 (371)
T d1k8kc_ 217 AWVS-HDSTVCLADADKKMAVA-TL---ASETLPLLAVTFITESSLVAAGH-DCFPVLFTY 271 (371)
T ss_dssp EEEE-TTTEEEEEEGGGTTEEE-EE---ECSSCCEEEEEEEETTEEEEEET-TSSCEEEEE
T ss_pred cccc-cCCcceEEeeeccccee-ee---ecccccceeeeecCCCCEEEEEc-CCceEEEEe
Confidence 9999 99999999998875443 22 46788899999999998888765 666666654
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=3.2e-38 Score=273.45 Aligned_cols=256 Identities=14% Similarity=0.144 Sum_probs=211.6
Q ss_pred CeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-EcCCeEEE
Q 014125 120 ESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRV 198 (430)
Q Consensus 120 ~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v 198 (430)
+....+++ +|+|+.|+.+. ++.|.+|++.+......+..|.. .|.+++|+|++++|++ +.|++|++
T Consensus 18 ~~~~~~a~-------~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~-----~v~~~~~sp~g~~latg~~dg~i~i 84 (311)
T d1nr0a1 18 GTAVVLGN-------TPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSH-----QTTVAKTSPSGYYCASGDVHGNVRI 84 (311)
T ss_dssp TCCCCCEE-------CTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSS-----CEEEEEECTTSSEEEEEETTSEEEE
T ss_pred CCeEEEEE-------cCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCC-----CEEEEEEeCCCCeEeccccCceEee
Confidence 34455666 78999999885 55699999999988888877665 9999999999999995 49999999
Q ss_pred EEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecC--CCeEEEEEcCCceeeEEeeccccCeEEEEEccC
Q 014125 199 FDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY--SQTSAIYREDNMELLYVLHGQEGGVTHVQFSRD 276 (430)
Q Consensus 199 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~ 276 (430)
||+........ .....|..+|.+++|+| ++.++++++. +..+++|++++++....+.+|...|++++|+|+
T Consensus 85 wd~~~~~~~~~------~~~~~~~~~v~~v~~s~-d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~ 157 (311)
T d1nr0a1 85 WDTTQTTHILK------TTIPVFSGPVKDISWDS-ESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPS 157 (311)
T ss_dssp EESSSTTCCEE------EEEECSSSCEEEEEECT-TSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSS
T ss_pred eeeeccccccc------cccccccCccccccccc-ccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99987543221 12356788999999999 5567777765 466999999999998899999999999999999
Q ss_pred CCE-EEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccc-----
Q 014125 277 GNY-LYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGF----- 350 (430)
Q Consensus 277 ~~~-l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~----- 350 (430)
+++ |++++ .|+.|++||+++..... . ...|...|.++.|+|++++|++++.|+.|++||+.+++.+..+
T Consensus 158 ~~~~l~sgs-~d~~i~i~d~~~~~~~~-~---~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~ 232 (311)
T d1nr0a1 158 RPFRIISGS-DDNTVAIFEGPPFKFKS-T---FGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSL 232 (311)
T ss_dssp SSCEEEEEE-TTSCEEEEETTTBEEEE-E---ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTS
T ss_pred ceeeecccc-ccccccccccccccccc-c---cccccccccccccCcccccccccccccccccccccccccccccccccc
Confidence 986 56666 99999999999874332 2 2578899999999999999999999999999999988776554
Q ss_pred --ccccCCeeEEEEcCCCcEEEEeeCCceeeecCCCc--------------------------cccccCCCcEEEEee
Q 014125 351 --QAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFED--------------------------LHLSGDENCVSVWSF 400 (430)
Q Consensus 351 --~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~--------------------------l~~~~~d~~i~~w~~ 400 (430)
.+|.+.|++++|+|++++|++|+.|+.|+|||.+. +++++.||.|++||.
T Consensus 233 ~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~ 310 (311)
T d1nr0a1 233 KNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNP 310 (311)
T ss_dssp SSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEET
T ss_pred ccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEeC
Confidence 36888999999999999999999999999996432 677778888888875
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=3.7e-37 Score=265.95 Aligned_cols=264 Identities=16% Similarity=0.201 Sum_probs=211.5
Q ss_pred eeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEc
Q 014125 113 SLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGY 192 (430)
Q Consensus 113 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 192 (430)
....+|...|++++| +|++++|++|+.||+|++||+.+++....+.. .|...|.+++|+|++.+++++.
T Consensus 6 ~~~~GH~~~V~~l~~-------s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~----~h~~~v~~v~~~~~g~~~~~~~ 74 (299)
T d1nr0a2 6 QVRYGHNKAITALSS-------SADGKTLFSADAEGHINSWDISTGISNRVFPD----VHATMITGIKTTSKGDLFTVSW 74 (299)
T ss_dssp EEECCCSSCEEEEEE-------CTTSSEEEEEETTSCEEEEETTTCCEEECSSC----SCSSCEEEEEECTTSCEEEEET
T ss_pred eEcCCCCCCcEEEEE-------CCCCCEEEEEcCCCeEEEEECCCCcEEEEEcC----CCCCcEEEEEeeccceeecccc
Confidence 356678899999999 77899999999999999999999988776642 1233899999999999988999
Q ss_pred CCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEE
Q 014125 193 NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQ 272 (430)
Q Consensus 193 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~ 272 (430)
|+.+++|+....... ........+...+.+++|+| ++.+++++ .++.+.+|+... ..... ....+.+++
T Consensus 75 d~~v~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~s~-~g~~~~~~-~~~~i~~~~~~~--~~~~~--~~~~~~~~~ 143 (299)
T d1nr0a2 75 DDHLKVVPAGGSGVD-----SSKAVANKLSSQPLGLAVSA-DGDIAVAA-CYKHIAIYSHGK--LTEVP--ISYNSSCVA 143 (299)
T ss_dssp TTEEEEECSSSSSSC-----TTSCCEEECSSCEEEEEECT-TSSCEEEE-ESSEEEEEETTE--EEEEE--CSSCEEEEE
T ss_pred eeeEEEeccCCcccc-----cccccccccccccccccccc-cccccccc-cccccccccccc--ccccc--ccccccccc
Confidence 999999998653211 11122234566789999999 44455544 567899998643 22222 345678999
Q ss_pred EccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCee---cc
Q 014125 273 FSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWI---SG 349 (430)
Q Consensus 273 ~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~---~~ 349 (430)
|+|++++|++++ .|+.|++||+++........ ..|...|++++|+|++++|++++.|+.|++||+.++..+ ..
T Consensus 144 ~s~~~~~l~~g~-~dg~i~~~d~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~ 219 (299)
T d1nr0a2 144 LSNDKQFVAVGG-QDSKVHVYKLSGASVSEVKT---IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNS 219 (299)
T ss_dssp ECTTSCEEEEEE-TTSEEEEEEEETTEEEEEEE---EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCC
T ss_pred cccccccccccc-cccccccccccccccccccc---cccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999 99999999998764332222 357889999999999999999999999999999887654 35
Q ss_pred cccccCCeeEEEEcCCCcEEEEeeCCceeeecCCCc---------------------------cccccCCCcEEEEeecc
Q 014125 350 FQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFED---------------------------LHLSGDENCVSVWSFLY 402 (430)
Q Consensus 350 ~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~---------------------------l~~~~~d~~i~~w~~~~ 402 (430)
+.+|...|++++|+|++++|++++.|+.+++|+.+. |++++.|+.|++||+.+
T Consensus 220 ~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~s~D~~i~iWdl~~ 299 (299)
T d1nr0a2 220 WTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNVPF 299 (299)
T ss_dssp CCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEEEETTSCEEEEECCC
T ss_pred ccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEECCCCEEEEEeCCCEEEEEeccC
Confidence 567899999999999999999999999999995432 78899999999999853
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=8.8e-37 Score=273.57 Aligned_cols=295 Identities=16% Similarity=0.181 Sum_probs=226.2
Q ss_pred EEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEec
Q 014125 76 LTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDA 155 (430)
Q Consensus 76 ~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~ 155 (430)
+.+..++.+.+|+....+.. .........|.+.|++++| +|+|++|++|+ |+.|++||+
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~-------------~~~l~~~~~H~~~V~~l~f-------s~dg~~lasg~-d~~i~iW~~ 90 (388)
T d1erja_ 32 LKKQTNDYYILYNPALPREI-------------DVELHKSLDHTSVVCCVKF-------SNDGEYLATGC-NKTTQVYRV 90 (388)
T ss_dssp SEEECSSCEEEECTTSCCCE-------------EEEEEEEEECSSCCCEEEE-------CTTSSEEEEEC-BSCEEEEET
T ss_pred cccCCCCcEEEeCCCCCcce-------------eeeeEeeCCCCCcEEEEEE-------CCCCCEEEEEe-CCeEEEEEe
Confidence 35666778889987643211 1111123468899999999 77999999986 899999999
Q ss_pred cCCceeeeeecccc-------------cccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCCcccccccccCCCCCC
Q 014125 156 TTGLLRCTYRAYDA-------------VDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQ 221 (430)
Q Consensus 156 ~~~~~~~~~~~~~~-------------~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~ 221 (430)
.+++.+..+..+.. ..+...|.+++|+|++++|++ +.|+.|++||.... .......+|
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~--------~~~~~~~~h 162 (388)
T d1erja_ 91 SDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENR--------KIVMILQGH 162 (388)
T ss_dssp TTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTT--------EEEEEECCC
T ss_pred cccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceeccccccccccccccc--------ccccccccc
Confidence 99988777654321 123446999999999999994 59999999998763 222233678
Q ss_pred CcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceE
Q 014125 222 AGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQV 301 (430)
Q Consensus 222 ~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~ 301 (430)
...|.++.+++ .+..+++++.++.+++||.++.........+...+....+.+++.+|++++ .|+.|++||.++....
T Consensus 163 ~~~v~~~~~~~-~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~i~~~~~~~~~ 240 (388)
T d1erja_ 163 EQDIYSLDYFP-SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGS-LDRAVRVWDSETGFLV 240 (388)
T ss_dssp SSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEE-TTSCEEEEETTTCCEE
T ss_pred ccccccccccc-ccccccccccceeeeeeeccccccccccccccccccccccCCCCCeEEEEc-CCCeEEEeecccCccc
Confidence 88999999999 677899999999999999999888777765555444444455788999998 9999999999987544
Q ss_pred EEEe---ecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCe------------ecccccccCCeeEEEEcCCC
Q 014125 302 VYKL---YRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKW------------ISGFQAAADTVNGFSFHPFL 366 (430)
Q Consensus 302 ~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~------------~~~~~~~~~~v~~~~~~~~~ 366 (430)
.... ....+|...|.+++|+|++++|++|+.||.|++||+.++.. ......|...|.+++|+|++
T Consensus 241 ~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 320 (388)
T d1erja_ 241 ERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQND 320 (388)
T ss_dssp EEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGG
T ss_pred eeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCC
Confidence 3221 12246788999999999999999999999999999986543 33445688899999999999
Q ss_pred cEEEEeeCCceeeecCCCc-------------------------------cccccCCCcEEEEeec
Q 014125 367 PMAASSSGHRRFPVDDFED-------------------------------LHLSGDENCVSVWSFL 401 (430)
Q Consensus 367 ~~l~s~~~d~~~~vw~~~~-------------------------------l~~~~~d~~i~~w~~~ 401 (430)
++|++|+.||.|++||... |++++.||+|++|+++
T Consensus 321 ~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 321 EYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp CEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred CEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence 9999999999999995432 6788999999999984
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.2e-36 Score=264.23 Aligned_cols=260 Identities=18% Similarity=0.310 Sum_probs=224.6
Q ss_pred eeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-Ec
Q 014125 114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GY 192 (430)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~ 192 (430)
...+|.++|++++| +|++++|++|+.||+|++||+.+++.+..+..+.. .|.+++|+|++.+++. +.
T Consensus 12 ~L~GH~~~I~~l~~-------sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~-----~V~~~~~~~~~~~~~~~~~ 79 (317)
T d1vyhc1 12 ALSGHRSPVTRVIF-------HPVFSVMVSASEDATIKVWDYETGDFERTLKGHTD-----SVQDISFDHSGKLLASCSA 79 (317)
T ss_dssp EEECCSSCEEEEEE-------CSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSS-----CEEEEEECTTSSEEEEEET
T ss_pred EEcCCCCCeEEEEE-------cCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCC-----cEEEEeeeccccccccccc
Confidence 45678899999999 67899999999999999999999999998887665 8999999999999995 48
Q ss_pred CCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEE
Q 014125 193 NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQ 272 (430)
Q Consensus 193 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~ 272 (430)
++.+.+|+.... ........|...+.++.++| ++..+++++.|+.+++||+++++....+..|...+.+++
T Consensus 80 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (317)
T d1vyhc1 80 DMTIKLWDFQGF--------ECIRTMHGHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVR 150 (317)
T ss_dssp TSCCCEEETTSS--------CEEECCCCCSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred cccccccccccc--------ccccccccccccceeeeccC-CCceEEeeccCcceeEeecccceeeeEEccCCCcceeee
Confidence 889999998663 22233467788899999999 677899999999999999999999999999999999999
Q ss_pred EccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCC--------------------CCEEEEEcc
Q 014125 273 FSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPS--------------------GRHLGTGGQ 332 (430)
Q Consensus 273 ~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------------------~~~l~~~~~ 332 (430)
|+|++.+|++++ .|+.|++|++.+..... .+ ..+...+.+++|+|+ +.++++++.
T Consensus 151 ~~~~~~~l~~~~-~d~~v~~~~~~~~~~~~-~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (317)
T d1vyhc1 151 PNQDGTLIASCS-NDQTVRVWVVATKECKA-EL---REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR 225 (317)
T ss_dssp ECTTSSEEEEEE-TTSCEEEEETTTCCEEE-EE---CCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEET
T ss_pred cccCCCEEEEEe-CCCeEEEEeeccceeeE-EE---ecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccC
Confidence 999999999999 99999999999875432 22 467778888888774 457899999
Q ss_pred CCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCCCc-------------------------cc
Q 014125 333 DGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFED-------------------------LH 387 (430)
Q Consensus 333 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~-------------------------l~ 387 (430)
|+.|++||+++++++..+.+|...|.+++|+|++++|++++.||.|++||... |+
T Consensus 226 d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~ 305 (317)
T d1vyhc1 226 DKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVV 305 (317)
T ss_dssp TSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEE
T ss_pred CCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEE
Confidence 99999999999999999999999999999999999999999988888885432 66
Q ss_pred cccCCCcEEEEe
Q 014125 388 LSGDENCVSVWS 399 (430)
Q Consensus 388 ~~~~d~~i~~w~ 399 (430)
+++.|++|++||
T Consensus 306 s~s~Dg~i~iWd 317 (317)
T d1vyhc1 306 TGSVDQTVKVWE 317 (317)
T ss_dssp EEETTSEEEEEC
T ss_pred EEeCCCeEEEeC
Confidence 777777777775
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.2e-37 Score=277.33 Aligned_cols=241 Identities=12% Similarity=0.104 Sum_probs=197.0
Q ss_pred CeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCc--eeeeeecccccccccceEEEEECCCCcEEE-EEcCCeE
Q 014125 120 ESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGL--LRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSV 196 (430)
Q Consensus 120 ~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i 196 (430)
++|.+++| +|++++||+|+.||.|++||+.+++ .+..++.|.. +|.+++|+|++++|+ ++.|+.|
T Consensus 8 ~pIt~~~~-------s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~-----~V~~l~fsp~~~~l~s~s~D~~i 75 (371)
T d1k8kc_ 8 EPISCHAW-------NKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNG-----QVTGVDWAPDSNRIVTCGTDRNA 75 (371)
T ss_dssp SCCCEEEE-------CTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSS-----CEEEEEEETTTTEEEEEETTSCE
T ss_pred CCeEEEEE-------CCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCC-----CEEEEEECCCCCEEEEEECCCeE
Confidence 68999999 7899999999999999999998876 3445555554 999999999999999 4589999
Q ss_pred EEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCcee----eEEeeccccCeEEEE
Q 014125 197 RVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL----LYVLHGQEGGVTHVQ 272 (430)
Q Consensus 197 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~----~~~~~~~~~~i~~~~ 272 (430)
++||+...... ......+|...|++++|+| +++.|++|+.|++|++|++..... ......|...|.+++
T Consensus 76 ~vWd~~~~~~~------~~~~~~~~~~~v~~i~~~p-~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~ 148 (371)
T d1k8kc_ 76 YVWTLKGRTWK------PTLVILRINRAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLD 148 (371)
T ss_dssp EEEEEETTEEE------EEEECCCCSSCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEE
T ss_pred EEEeecccccc------ccccccccccccccccccc-ccccceeecccCcceeeeeeccccccccccccccccccccccc
Confidence 99999753211 1112356778899999999 677999999999999998876542 333456888999999
Q ss_pred EccCCCEEEEEecCCCeEEEEeCCCCceE--------------EEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEE
Q 014125 273 FSRDGNYLYTGGRKDPYILCWDLRKAVQV--------------VYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHI 338 (430)
Q Consensus 273 ~~~~~~~l~~~~~~d~~i~i~d~~~~~~~--------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v 338 (430)
|+|++++|++++ .|+.|++||+...... .........|...+.+++|+|+|++|++++.|+.|++
T Consensus 149 ~~p~~~~l~s~s-~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~i 227 (371)
T d1k8kc_ 149 WHPNSVLLAAGS-CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCL 227 (371)
T ss_dssp ECTTSSEEEEEE-TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEE
T ss_pred ccccccceeccc-cCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceE
Confidence 999999999999 9999999998643210 0112233578889999999999999999999999999
Q ss_pred EEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeec
Q 014125 339 YDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVD 381 (430)
Q Consensus 339 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw 381 (430)
||+.+++.+..+..|..+|.+++|+|++++|++|. |+.+++|
T Consensus 228 wd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~ 269 (371)
T d1k8kc_ 228 ADADKKMAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLF 269 (371)
T ss_dssp EEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEET-TSSCEEE
T ss_pred EeeecccceeeeecccccceeeeecCCCCEEEEEc-CCceEEE
Confidence 99999999999999999999999999998888665 5655554
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=9.5e-37 Score=273.66 Aligned_cols=332 Identities=11% Similarity=0.108 Sum_probs=232.0
Q ss_pred ceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecccc
Q 014125 52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (430)
Q Consensus 52 ~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (430)
.....++|.+.|+++++++ ++|+|||.|++|+|||..+.......... .....+...+..+......
T Consensus 6 ~~~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~ 72 (393)
T d1sq9a_ 6 TANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKS-----------YSHFVHKSGLHHVDVLQAI 72 (393)
T ss_dssp EEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGE-----------EEEECCTTCEEEEEEEEEE
T ss_pred eeecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCccccee-----------EeeeeccCCceEeeeEeee
Confidence 3457889999999999875 69999999999999998755432111110 0111122222222221111
Q ss_pred CccCCCCceEEEEeCCCcEEEEeccCCceeeee-----ecccccccccceEEEEECCCC-----cEEE-EEcCCeEEEEE
Q 014125 132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTY-----RAYDAVDEITAAFSVAFNPTG-----TKIF-AGYNKSVRVFD 200 (430)
Q Consensus 132 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~-----~~l~-~~~d~~i~v~d 200 (430)
.....++.++++++.||.|++|++......... .......+...+..++|.++. .+++ ++.|+.+++|+
T Consensus 73 ~~~~~~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~ 152 (393)
T d1sq9a_ 73 ERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWK 152 (393)
T ss_dssp ETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEE
T ss_pred ccCCCCCcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEE
Confidence 111234567889999999999998765432221 112222233467778887754 4555 56899999999
Q ss_pred cCCCCCcccc----------cccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEe------ecc
Q 014125 201 VHRPGRDFEK----------YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVL------HGQ 264 (430)
Q Consensus 201 ~~~~~~~~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~------~~~ 264 (430)
+......... ..........+...+.+++|+|+ + +|++|+.|++|++||+.+++.+..+ .+|
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d-g-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h 230 (393)
T d1sq9a_ 153 FHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISER-G-LIATGFNNGTVQISELSTLRPLYNFESQHSMINN 230 (393)
T ss_dssp EESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTT-S-EEEEECTTSEEEEEETTTTEEEEEEECCC---CC
T ss_pred eecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCC-C-EEEEEeCCCcEEEEeecccccccccccccccccc
Confidence 8643221110 01111223345566899999995 3 8999999999999999998876544 468
Q ss_pred ccCeEEEEEccCCCEEEEEecCCC---eEEEEeCCCCceEEEEe---------ecccCCccceEEEEEcCCCCEEEEEcc
Q 014125 265 EGGVTHVQFSRDGNYLYTGGRKDP---YILCWDLRKAVQVVYKL---------YRSSEHTNQRILFDIEPSGRHLGTGGQ 332 (430)
Q Consensus 265 ~~~i~~~~~~~~~~~l~~~~~~d~---~i~i~d~~~~~~~~~~~---------~~~~~~~~~v~~~~~~~~~~~l~~~~~ 332 (430)
..+|++++|+|+|++|++++ .|+ .|++||++++....... ....+|...|++++|+|++++|++|+.
T Consensus 231 ~~~V~~l~~spdg~~l~sgs-~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~ 309 (393)
T d1sq9a_ 231 SNSIRSVKFSPQGSLLAIAH-DSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW 309 (393)
T ss_dssp CCCEEEEEECSSTTEEEEEE-EETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEET
T ss_pred cceEEEcccccccceeeeec-CCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECC
Confidence 88999999999999999998 776 59999999875433211 122478999999999999999999999
Q ss_pred CCcEEEEEcCCCCeecccccccCCee----EEEEcCCCcEEEEeeCCceeeec-----------CCCccccccCCCcEEE
Q 014125 333 DGLVHIYDLQTGKWISGFQAAADTVN----GFSFHPFLPMAASSSGHRRFPVD-----------DFEDLHLSGDENCVSV 397 (430)
Q Consensus 333 dg~i~vwd~~~~~~~~~~~~~~~~v~----~~~~~~~~~~l~s~~~d~~~~vw-----------~~~~l~~~~~d~~i~~ 397 (430)
|++|+|||+.+++++.++++|.+.|. .++|+|++..+++++... +..| ..+.+++++.|+.||+
T Consensus 310 D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~ir~ 388 (393)
T d1sq9a_ 310 DGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFD-VKFLKKGWRSGMGADLNESLCCVCLDRSIRW 388 (393)
T ss_dssp TSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEE-EEEECTTTSBSTTCTTSCEEEEEETTTEEEE
T ss_pred CCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEEEcccce-EEECccCceeccccCCCCEEEEEEcCCeEEE
Confidence 99999999999999999999998875 588999999887665332 2222 1234788899999999
Q ss_pred Eee
Q 014125 398 WSF 400 (430)
Q Consensus 398 w~~ 400 (430)
|.-
T Consensus 389 ~~~ 391 (393)
T d1sq9a_ 389 FRE 391 (393)
T ss_dssp EEE
T ss_pred EeC
Confidence 964
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.4e-36 Score=263.66 Aligned_cols=295 Identities=17% Similarity=0.246 Sum_probs=214.7
Q ss_pred cceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccc
Q 014125 51 NQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH 130 (430)
Q Consensus 51 ~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 130 (430)
+..++++||.+.|.+ +++++|++|||||.||+|+|||+.+++.... ...|...|.+++|.|
T Consensus 7 ~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~-----------------~~~h~~~V~~v~~~~- 67 (342)
T d2ovrb2 7 KSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRT-----------------LVGHTGGVWSSQMRD- 67 (342)
T ss_dssp CCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEE-----------------CCCCSSCEEEEEEET-
T ss_pred CcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEE-----------------EeCCCCCEEEEEeCC-
Confidence 455688999999875 4677899999999999999999987754322 234668999999943
Q ss_pred cCccCCCCceEEEEeCCCcEEEEeccCCceeeeeeccccccc---------------------------------ccceE
Q 014125 131 MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDE---------------------------------ITAAF 177 (430)
Q Consensus 131 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~---------------------------------~~~v~ 177 (430)
.+|++++.|+.+++|+.................. .....
T Consensus 68 --------~~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~ 139 (342)
T d2ovrb2 68 --------NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAA 139 (342)
T ss_dssp --------TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSC
T ss_pred --------CccccceecccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeeccccc
Confidence 3899999999999999877654433322211000 00000
Q ss_pred EEEECCCCcEEE-EEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCce
Q 014125 178 SVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME 256 (430)
Q Consensus 178 ~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~ 256 (430)
.....+....++ ++.++.|++||.... .......+|...+..+.+ ++..+++|+.||.|++||++.++
T Consensus 140 ~~~~~~~~~~~~~~~~d~~i~~~d~~~~--------~~~~~~~~~~~~~~~~~~---~~~~l~s~~~dg~i~~~d~~~~~ 208 (342)
T d2ovrb2 140 VRCVQYDGRRVVSGAYDFMVKVWDPETE--------TCLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETGN 208 (342)
T ss_dssp EEEEEECSSCEEEEETTSCEEEEEGGGT--------EEEEEECCCSSCEEEEEE---CSSEEEEEETTSCEEEEETTTCC
T ss_pred ceeeccccceeeeecCCCeEEEeecccc--------eeeEEEcCcccccccccC---CCCEEEEEeCCCeEEEeecccce
Confidence 111112222333 557778888877542 111223455555666555 45689999999999999999999
Q ss_pred eeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcE
Q 014125 257 LLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLV 336 (430)
Q Consensus 257 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 336 (430)
.+..+..|...+.+++++ +++|++++ .|+.|++||+...... ..+.....|...+.++.++ ++++++|+.||.|
T Consensus 209 ~~~~~~~~~~~v~~~~~~--~~~l~s~s-~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i 282 (342)
T d2ovrb2 209 CIHTLTGHQSLTSGMELK--DNILVSGN-ADSTVKIWDIKTGQCL-QTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTV 282 (342)
T ss_dssp EEEEECCCCSCEEEEEEE--TTEEEEEE-TTSCEEEEETTTCCEE-EEECSTTSCSSCEEEEEEC--SSEEEEEETTSEE
T ss_pred eeeEecccccceeEEecC--CCEEEEEc-CCCEEEEEeccccccc-ccccccceeeeceeecccC--CCeeEEEcCCCEE
Confidence 999999999999888775 46899999 9999999999887544 3444445677777777776 5699999999999
Q ss_pred EEEEcCCCCeecccc-----cccCCeeEEEEcCCCcEEEEeeCCceeeecCCCccccccCCCcEEEEeecc
Q 014125 337 HIYDLQTGKWISGFQ-----AAADTVNGFSFHPFLPMAASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLY 402 (430)
Q Consensus 337 ~vwd~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~ 402 (430)
++||+++++.++.+. +|...|++++|+|++.+|++|+.||. .+..|++|||..
T Consensus 283 ~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt-------------~~~~l~~~Df~~ 340 (342)
T d2ovrb2 283 KLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGT-------------EETKLLVLDFDV 340 (342)
T ss_dssp EEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSS-------------SCCEEEEEECCC
T ss_pred EEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCC-------------CeeEEEEEeCCC
Confidence 999999999987763 57778999999999999999987652 244577777653
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=5.5e-36 Score=264.43 Aligned_cols=287 Identities=15% Similarity=0.279 Sum_probs=211.6
Q ss_pred eecccCCCce-eEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccC
Q 014125 54 RTSSIPNNFL-KGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS 132 (430)
Q Consensus 54 ~~~~~h~~~v-~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 132 (430)
.+++||.+.| +|++| ++++||||+.||+|+|||+.+++... ....|..+|.+++|.
T Consensus 6 ~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~-----------------~l~~H~~~V~~l~~s---- 62 (355)
T d1nexb2 6 TTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLL-----------------QLSGHDGGVWALKYA---- 62 (355)
T ss_dssp EEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEE-----------------EEECCSSCEEEEEEE----
T ss_pred EEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEE-----------------EEECCCCCEEEEEEc----
Confidence 4688999886 55554 67899999999999999998764322 233567899999994
Q ss_pred ccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCccccc
Q 014125 133 ASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKY 211 (430)
Q Consensus 133 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~ 211 (430)
+ +.+|++|+.||.|++|+....+.......... ........+.+++.+++ ++.|+.|++||+..........
T Consensus 63 ---~-~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~ 135 (355)
T d1nexb2 63 ---H-GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNS---TVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHG 135 (355)
T ss_dssp ---T-TTEEEEEETTCCEEEEETTTTEEEEEECCCSS---CEEEEEEEEETTEEEEEEEETTSEEEEEECCC--------
T ss_pred ---C-CCEEEEEecccccccccccccccccccccccc---cccccccccccccceeeeecCCCcEEEEEccCCceecccc
Confidence 4 35899999999999999998877666554432 12455677888888888 4589999999997643211100
Q ss_pred cc---------------ccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccC
Q 014125 212 ST---------------LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRD 276 (430)
Q Consensus 212 ~~---------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~ 276 (430)
.. .......|...+... .+ ++++++++..|+.|++||+++++.+.....+...+.++.|+|+
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~-~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (355)
T d1nexb2 136 EEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SG-HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHE 212 (355)
T ss_dssp ---CCCEEESCTTTCTTEEEEEECCSSCEEEE--EE-ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETT
T ss_pred ccceeccceeccccccceeeeeeecccccccc--cc-ccceeeeecccceeeeeecccccceeeeecccccccccccccc
Confidence 00 000011223333333 33 4568999999999999999999999998889999999999999
Q ss_pred CCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCC
Q 014125 277 GNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADT 356 (430)
Q Consensus 277 ~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 356 (430)
+..+++++ .|+.|++||++++.... .+ .+|...|.++++++ ++|++|+.||.|++||++++... +..|...
T Consensus 213 ~~~~~~~~-~d~~i~i~d~~~~~~~~-~~---~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~ 283 (355)
T d1nexb2 213 RKRCISAS-MDTTIRIWDLENGELMY-TL---QGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRK--FSYHHTN 283 (355)
T ss_dssp TTEEEEEE-TTSCEEEEETTTCCEEE-EE---CCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCEE--EEEECTT
T ss_pred ceeeeccc-ccceEEeeecccccccc-cc---cccccccccccccc--ceeeeeeccccccccccccccee--cccccCC
Confidence 99999999 99999999999875443 22 57888999999874 69999999999999999987643 4556666
Q ss_pred eeEEE-EcCCCcEEEEeeCCceeeecCC
Q 014125 357 VNGFS-FHPFLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 357 v~~~~-~~~~~~~l~s~~~d~~~~vw~~ 383 (430)
+..+. +++++.+|++++ |+.|+|||.
T Consensus 284 ~~~~~~~~~~~~~l~~g~-d~~i~vwd~ 310 (355)
T d1nexb2 284 LSAITTFYVSDNILVSGS-ENQFNIYNL 310 (355)
T ss_dssp CCCCCEEEECSSEEEEEE-TTEEEEEET
T ss_pred ceEEEEEcCCCCEEEEEe-CCEEEEEEC
Confidence 66654 566666666654 566666643
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=6.3e-36 Score=261.03 Aligned_cols=289 Identities=13% Similarity=0.121 Sum_probs=207.2
Q ss_pred ceeEEEECcCCceEEEecCCC-eEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCce
Q 014125 62 FLKGIKWSPDGSSFLTSSEDK-TLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV 140 (430)
Q Consensus 62 ~v~~~~~sp~~~~l~s~~~dg-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (430)
.+++++|+|+|+.||.++.+. .|+.|+...... ........++...|++++|+| ..++.+
T Consensus 19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~--------------~~~~~~~gh~~~~v~~v~fsP-----~~~g~~ 79 (325)
T d1pgua1 19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKV--------------PPVVQFTGHGSSVVTTVKFSP-----IKGSQY 79 (325)
T ss_dssp CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSS--------------CSEEEECTTTTSCEEEEEECS-----STTCCE
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCc--------------cceEEEeCCCCCCEEEEEEee-----CCCCCE
Confidence 368899999999999887654 355665443211 111112223457899999966 346789
Q ss_pred EEEEeCCCcEEEEeccCCceeeeeeccc---ccccccceEEEEECCCCcEEEE-E--cCCeEEEEEcCCCCCcccccccc
Q 014125 141 FASTTRDHPIHLWDATTGLLRCTYRAYD---AVDEITAAFSVAFNPTGTKIFA-G--YNKSVRVFDVHRPGRDFEKYSTL 214 (430)
Q Consensus 141 l~~~~~dg~i~vwd~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~-~--~d~~i~v~d~~~~~~~~~~~~~~ 214 (430)
|++|+.||+|++||+..++....+.... ...+..+|.+++|+++++++++ + .++.+++|+.+... .
T Consensus 80 lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~--------~ 151 (325)
T d1pgua1 80 LCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGN--------S 151 (325)
T ss_dssp EEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCC--------E
T ss_pred EEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccc--------c
Confidence 9999999999999998765444333221 1123348999999999999884 3 46789999987632 2
Q ss_pred cCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEe---eccccCeEEEEEccC-CCEEEEEecCCCeE
Q 014125 215 KGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVL---HGQEGGVTHVQFSRD-GNYLYTGGRKDPYI 290 (430)
Q Consensus 215 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~---~~~~~~i~~~~~~~~-~~~l~~~~~~d~~i 290 (430)
.....+|...|.+++|+|++..++++++.|+.|++||....+....+ ..|...|++++|+|+ +.+|++++ .|+.|
T Consensus 152 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~-~d~~i 230 (325)
T d1pgua1 152 LGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVG-SDRKI 230 (325)
T ss_dssp EEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEE-TTCCE
T ss_pred ceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccc-cccce
Confidence 22235788899999999977777889999999999999887765554 356778999999997 57888888 99999
Q ss_pred EEEeCCCCceEEEEeecccCCccceEEEEEc---CCCCEEEEEccCCcEEEEEcCCCCeecccccccCC--eeEEEEcCC
Q 014125 291 LCWDLRKAVQVVYKLYRSSEHTNQRILFDIE---PSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADT--VNGFSFHPF 365 (430)
Q Consensus 291 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~--v~~~~~~~~ 365 (430)
++||+++..... .+ ..|...+..+.|+ |+|++|++++.|+.|+|||+++++++..+..|... +..+++.+.
T Consensus 231 ~iwd~~~~~~~~-~l---~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (325)
T d1pgua1 231 SCFDGKSGEFLK-YI---EDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT 306 (325)
T ss_dssp EEEETTTCCEEE-EC---CBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE
T ss_pred eeeeeccccccc-cc---cccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEEC
Confidence 999999875432 32 3444444433333 67899999999999999999999999888766553 334444432
Q ss_pred -CcEEEEeeCCceeeecC
Q 014125 366 -LPMAASSSGHRRFPVDD 382 (430)
Q Consensus 366 -~~~l~s~~~d~~~~vw~ 382 (430)
..+|++++.||.|+|||
T Consensus 307 ~~~~l~s~s~dg~i~vwd 324 (325)
T d1pgua1 307 GNGRIISLSLDGTLNFYE 324 (325)
T ss_dssp ETTEEEEEETTSCEEEEE
T ss_pred CCCEEEEEECCCEEEEEE
Confidence 33677787555554443
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.1e-35 Score=254.99 Aligned_cols=265 Identities=16% Similarity=0.164 Sum_probs=203.5
Q ss_pred cceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccc
Q 014125 51 NQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH 130 (430)
Q Consensus 51 ~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 130 (430)
+.++++.||.++|++++|+| |+||+.||+|++||+.++ ...|...|.++++
T Consensus 4 ~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~----------------------~~~h~~~V~~~~~--- 54 (287)
T d1pgua2 4 EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM----------------------HQDHSNLIVSLDN--- 54 (287)
T ss_dssp EEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE----------------------ECCCCSCEEEEEC---
T ss_pred ceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC----------------------CCCCCCCEEEEEe---
Confidence 45778999999999999997 999999999999998643 1246678999998
Q ss_pred cCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccc
Q 014125 131 MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEK 210 (430)
Q Consensus 131 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~ 210 (430)
++ +..+++++.|+++++|++...+. . ..+..+.+++++..++.+.++.+.+|+.......
T Consensus 55 ----~~-~~~~~s~s~D~~v~~w~~~~~~~-------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 114 (287)
T d1pgua2 55 ----SK-AQEYSSISWDDTLKVNGITKHEF-------G-----SQPKVASANNDGFTAVLTNDDDLLILQSFTGDII--- 114 (287)
T ss_dssp ----CS-TTCCEEEETTTEEEETTEEEEEC-------S-----SCEEEEEECSSSEEEEEETTSEEEEEETTTCCEE---
T ss_pred ----cC-CCeEEEEeecccccccccccccc-------c-----cceeeeeeccCCceEEEeecccceeeeccceeee---
Confidence 33 35689999999999999754321 1 1566889999999998888889999998763221
Q ss_pred cccccCCCCCCCcceEEEEEcCCCCceEEEecCC-CeEEEEEcCCceeeEEee-ccccCeEEEEEccCCCEEEEEecCCC
Q 014125 211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS-QTSAIYREDNMELLYVLH-GQEGGVTHVQFSRDGNYLYTGGRKDP 288 (430)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~v~~~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~d~ 288 (430)
... .....+ .+++| ++..+++++.+ +.|++|++...+....+. .|...+++++|+|++.+|++++ .||
T Consensus 115 -~~~-----~~~~~~--~~~~~-~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~-~dg 184 (287)
T d1pgua2 115 -KSV-----RLNSPG--SAVSL-SQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGD-VMG 184 (287)
T ss_dssp -EEE-----ECSSCE--EEEEE-CSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEE-TTS
T ss_pred -eec-----ccccee--eeeec-cCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCcccccccc-ccc
Confidence 111 111223 34556 34455555555 579999998776655544 4678899999999999999999 999
Q ss_pred eEEEEeCCCCceEEEEeecccCCccceEEEEEcCC----------CCEEEEEccCCcEEEEEcCC-CCeecccccccCCe
Q 014125 289 YILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPS----------GRHLGTGGQDGLVHIYDLQT-GKWISGFQAAADTV 357 (430)
Q Consensus 289 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----------~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~v 357 (430)
.|++||+.+..... .....|...|.+++|+|. +.+|++|+.|+.|+|||+++ .+.+..+.+|.+.|
T Consensus 185 ~i~i~d~~~~~~~~---~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V 261 (287)
T d1pgua2 185 KILLYDLQSREVKT---SRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGV 261 (287)
T ss_dssp CEEEEETTTTEEEE---CCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCE
T ss_pred cccceeeccccccc---ccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCe
Confidence 99999998875432 223678899999999874 46899999999999999976 56677788999999
Q ss_pred eEEEEcCCCcEEEEeeCCcee
Q 014125 358 NGFSFHPFLPMAASSSGHRRF 378 (430)
Q Consensus 358 ~~~~~~~~~~~l~s~~~d~~~ 378 (430)
++++|+|++ .|++++.|+.|
T Consensus 262 ~~v~~~~~~-~l~s~g~D~~v 281 (287)
T d1pgua2 262 NNLLWETPS-TLVSSGADACI 281 (287)
T ss_dssp EEEEEEETT-EEEEEETTSCE
T ss_pred EEEEECCCC-EEEEEECCCeE
Confidence 999999986 47777644333
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.6e-34 Score=253.37 Aligned_cols=304 Identities=13% Similarity=0.122 Sum_probs=218.9
Q ss_pred cceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccc
Q 014125 51 NQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH 130 (430)
Q Consensus 51 ~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 130 (430)
+.+++..+|++.|++|+|+|++++||+|+.||+|+|||+..+.. .........|..+|.+++|+|.
T Consensus 2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~--------------~~~~~~~~~h~~~V~~v~f~~~ 67 (342)
T d1yfqa_ 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK--------------NVDLLQSLRYKHPLLCCNFIDN 67 (342)
T ss_dssp EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTT--------------EEEEEEEEECSSCEEEEEEEES
T ss_pred CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCc--------------ceEEEEecCCCCCEEEEEEeCC
Confidence 45678899999999999999999999999999999999875432 1122234468889999999552
Q ss_pred cCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCccc
Q 014125 131 MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFE 209 (430)
Q Consensus 131 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~ 209 (430)
++.+|++|+.||.|++|++..+............ ......+.++...++ ++.++.+++||++.......
T Consensus 68 ------~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~ 137 (342)
T d1yfqa_ 68 ------TDLQIYVGTVQGEILKVDLIGSPSFQALTNNEAN----LGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVI 137 (342)
T ss_dssp ------SSEEEEEEETTSCEEEECSSSSSSEEECBSCCCC----SCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCE
T ss_pred ------CCCEEEEcccccceeeeecccccccccccccccc----cccccccccccccccccccccccceeecccccccee
Confidence 4568999999999999999888766655544321 333445555666666 66999999999876433322
Q ss_pred ccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeE---EeeccccCeEEEEEc-cCCCEEEEEec
Q 014125 210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLY---VLHGQEGGVTHVQFS-RDGNYLYTGGR 285 (430)
Q Consensus 210 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~---~~~~~~~~i~~~~~~-~~~~~l~~~~~ 285 (430)
........ ........+.+.+ ....+++++.|+.|++||++..+... ....+...+.+..+. +++..+++++
T Consensus 138 ~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s- 213 (342)
T d1yfqa_ 138 AVKNLNSN--NTKVKNKIFTMDT-NSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSS- 213 (342)
T ss_dssp EEEESCSS--SSSSCCCEEEEEE-CSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEE-
T ss_pred eecccccc--cccceeeeeeeec-cCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeec-
Confidence 22222111 1122334455556 56689999999999999998765332 222334455665554 4667888888
Q ss_pred CCCeEEEEeCCCCceE-------EEE----eecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccccccc
Q 014125 286 KDPYILCWDLRKAVQV-------VYK----LYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAA 354 (430)
Q Consensus 286 ~d~~i~i~d~~~~~~~-------~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 354 (430)
.||.+.+|++...... ... ......|...+++++|+|++++|++|+.||.|++||+++++.+..+..+
T Consensus 214 ~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~- 292 (342)
T d1yfqa_ 214 IDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF- 292 (342)
T ss_dssp TTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC-
T ss_pred CCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCC-
Confidence 9999999998653211 101 1112356678899999999999999999999999999999998888643
Q ss_pred CCeeEEEEcCCCcEEEEeeCCceeeecCC
Q 014125 355 DTVNGFSFHPFLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 355 ~~v~~~~~~~~~~~l~s~~~d~~~~vw~~ 383 (430)
..+..++|+|++++|++++.|+.+++|..
T Consensus 293 ~~~~~~~~s~~~~~l~~a~sdd~~~~~~~ 321 (342)
T d1yfqa_ 293 NEDSVVKIACSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp SSSEEEEEEECSSEEEEEEECTHHHHCSS
T ss_pred CCCEEEEEEeCCCEEEEEEcCCcEEEeee
Confidence 34556788899999999998888888754
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1e-33 Score=242.73 Aligned_cols=278 Identities=17% Similarity=0.274 Sum_probs=211.5
Q ss_pred cceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccc
Q 014125 51 NQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH 130 (430)
Q Consensus 51 ~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 130 (430)
+.++....|...|+|++| ||++||||+.||+|+|||+.+++... ....|...|.+++|
T Consensus 6 ~~i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~-----------------~l~~H~~~V~~v~~--- 63 (293)
T d1p22a2 6 QRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKR-----------------ILTGHTGSVLCLQY--- 63 (293)
T ss_dssp CCEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEE-----------------EECCCSSCEEEEEC---
T ss_pred EEEeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEE-----------------EEecCCCCEeeeec---
Confidence 344566789999998765 78999999999999999998764432 22346689999987
Q ss_pred cCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCccc
Q 014125 131 MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFE 209 (430)
Q Consensus 131 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~ 209 (430)
++++|++|+.||.|++|++..+........... . ...+.+....++ +..++.+.+|+........
T Consensus 64 ------~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 129 (293)
T d1p22a2 64 ------DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCE------A-VLHLRFNNGMMVTCSKDRSIAVWDMASPTDIT- 129 (293)
T ss_dssp ------CSSEEEEEETTSCEEEEESSSCCEEEEECCCCS------C-EEEEECCTTEEEEEETTSCEEEEECSSSSCCE-
T ss_pred ------ccceeeccccccccccccccccccccccccccc------c-cccccccccceeecccccceeEeecccccccc-
Confidence 567999999999999999999887666554432 2 223334444444 6699999999987643321
Q ss_pred ccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCe
Q 014125 210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPY 289 (430)
Q Consensus 210 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~ 289 (430)
.......|...+..+.+.+ ..+++++.|+.|++||.++++.+..+.++...+..+.++ +.++++++ .||.
T Consensus 130 ----~~~~~~~~~~~v~~~~~~~---~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~-~dg~ 199 (293)
T d1p22a2 130 ----LRRVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGS-SDNT 199 (293)
T ss_dssp ----EEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEE-TTSC
T ss_pred ----ccccccccccccccceecc---cccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEec-CCCE
Confidence 1112345667788888765 378889999999999999999999999898888888774 56899998 9999
Q ss_pred EEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCC---------CCeecccccccCCeeEE
Q 014125 290 ILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQT---------GKWISGFQAAADTVNGF 360 (430)
Q Consensus 290 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~---------~~~~~~~~~~~~~v~~~ 360 (430)
|++||+++...... . ..+...+.. +++++.+|++|+.||.|++||+.+ ...+..+.+|.+.|+++
T Consensus 200 i~i~d~~~~~~~~~-~---~~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v 273 (293)
T d1p22a2 200 IRLWDIECGACLRV-L---EGHEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRL 273 (293)
T ss_dssp EEEEETTTCCEEEE-E---CCCSSCEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCE
T ss_pred EEEEecccceeeee-e---cccceeeee--ccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEE
Confidence 99999998754432 2 455666654 566788999999999999999753 34567788999999999
Q ss_pred EEcCCCcEEEEeeCCceeeecC
Q 014125 361 SFHPFLPMAASSSGHRRFPVDD 382 (430)
Q Consensus 361 ~~~~~~~~l~s~~~d~~~~vw~ 382 (430)
+|+ +.+|++++.||.|+|||
T Consensus 274 ~~d--~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 274 QFD--EFQIVSSSHDDTILIWD 293 (293)
T ss_dssp EEC--SSCEEECCSSSEEEEEC
T ss_pred EEc--CCEEEEEecCCEEEEeC
Confidence 995 56788888766666664
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=6e-33 Score=243.53 Aligned_cols=262 Identities=16% Similarity=0.293 Sum_probs=214.4
Q ss_pred eecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcC
Q 014125 115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYN 193 (430)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d 193 (430)
..+|.++|++++| +|++.+|++|+.||+|++||+.+++.+..+..+.. .|.+++|+|++.+++ ++.|
T Consensus 51 L~GH~~~I~~l~~-------s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~-----~v~~v~~~~~~~~l~~~~~d 118 (340)
T d1tbga_ 51 LRGHLAKIYAMHW-------GTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSS-----WVMTCAYAPSGNYVACGGLD 118 (340)
T ss_dssp ECCCSSCEEEEEE-------CTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCS-----CEEEEEECTTSSEEEEEETT
T ss_pred ECCCCCCEEEEEE-------CCCCCEEEEEECCCceeeeecccceeEEEEecccc-----cEEeeEeeccceeeeeeccc
Confidence 3457789999999 77899999999999999999999999988887765 899999999999999 4599
Q ss_pred CeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEE
Q 014125 194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQF 273 (430)
Q Consensus 194 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~ 273 (430)
+.+++|+............ ...+|........... ...+.....+.....+.............+...+....+
T Consensus 119 ~~i~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (340)
T d1tbga_ 119 NICSIYNLKTREGNVRVSR----ELAGHTGYLSCCRFLD--DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSL 192 (340)
T ss_dssp CCEEEEESSSSCSCCCEEE----EECCCSSCEEEEEEEE--TTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEE
T ss_pred ceeecccccccccccccce----eccccccccccccccc--ccccccccccccccccccccccccccccccceeEeeecc
Confidence 9999999876443322222 2245555555555554 347788888999999999888877777778889999999
Q ss_pred ccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccc--c
Q 014125 274 SRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGF--Q 351 (430)
Q Consensus 274 ~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~--~ 351 (430)
.+.+.++++++ .|+.|++||+++.... ..+ .+|...|++++|+|++++|++|+.||.|++||+...+.+..+ .
T Consensus 193 ~~~~~~~~~~~-~d~~v~i~d~~~~~~~-~~~---~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~ 267 (340)
T d1tbga_ 193 APDTRLFVSGA-CDASAKLWDVREGMCR-QTF---TGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD 267 (340)
T ss_dssp CTTSSEEEEEE-TTTEEEEEETTTTEEE-EEE---CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCT
T ss_pred ccccceeEEee-cCceEEEEECCCCcEE-EEE---eCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccc
Confidence 99999999999 9999999999987533 232 578899999999999999999999999999999988876654 4
Q ss_pred cccCCeeEEEEcCCCcEEEEeeCCceeeecCCCc-------------------------cccccCCCcEEEEe
Q 014125 352 AAADTVNGFSFHPFLPMAASSSGHRRFPVDDFED-------------------------LHLSGDENCVSVWS 399 (430)
Q Consensus 352 ~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~-------------------------l~~~~~d~~i~~w~ 399 (430)
.+...|.+++|+|++++|++++.||.|++||... |++++.||.|++||
T Consensus 268 ~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 268 NIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp TCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred cccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence 5667899999999999999999888888884332 66667777777775
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.5e-34 Score=249.19 Aligned_cols=267 Identities=13% Similarity=0.129 Sum_probs=204.6
Q ss_pred CeeeeeeeccccCccCCCCceEEEEeCCC-cEEEEeccCCce--eeeeecccccccccceEEEEECC--CCcEEEEE-cC
Q 014125 120 ESVYDFCWFPHMSASDPTSCVFASTTRDH-PIHLWDATTGLL--RCTYRAYDAVDEITAAFSVAFNP--TGTKIFAG-YN 193 (430)
Q Consensus 120 ~~v~~~~~~~~~~~~~~~~~~l~~~~~dg-~i~vwd~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~-~d 193 (430)
..+.+++| +|++..|+.++.+. .|+.|+...... ...+..|.. ..|++++|+| ++.+|+++ .|
T Consensus 18 ~~~t~l~~-------~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~----~~v~~v~fsP~~~g~~lasgs~D 86 (325)
T d1pgua1 18 NFTTHLSY-------DPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGS----SVVTTVKFSPIKGSQYLCSGDES 86 (325)
T ss_dssp TCCCCCEE-------ETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTT----SCEEEEEECSSTTCCEEEEEETT
T ss_pred CCeEEEEE-------CCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCC----CCEEEEEEeeCCCCCEEEEEeCC
Confidence 34567777 66888998886654 356676554432 334443321 2799999998 56788854 89
Q ss_pred CeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEec--CCCeEEEEEcCCceeeEEeeccccCeEEE
Q 014125 194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS--YSQTSAIYREDNMELLYVLHGQEGGVTHV 271 (430)
Q Consensus 194 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~v~~~d~~~~~~~~~~~~~~~~i~~~ 271 (430)
|+|++||+...................+.++|.+++|+++ +..+++++ .++.+.+|+..+++.+..+.+|...|+++
T Consensus 87 g~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 165 (325)
T d1pgua1 87 GKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFE-GRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINAC 165 (325)
T ss_dssp SEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTT-SSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEE
T ss_pred CCEEEeeecCCcceeeeecccccccccccCcEEEEEECCC-CCccceeeccccceEEEEeecccccceeeeecccccccc
Confidence 9999999976433222212222233567788999999995 45555544 46789999999999999999999999999
Q ss_pred EEccCCCE-EEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCC-CCEEEEEccCCcEEEEEcCCCCeecc
Q 014125 272 QFSRDGNY-LYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPS-GRHLGTGGQDGLVHIYDLQTGKWISG 349 (430)
Q Consensus 272 ~~~~~~~~-l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~ 349 (430)
+|+|++.+ +++++ .|+.+++||+...+. .........+...|.+++|+|+ +.+|++++.||.|++||+++++.+..
T Consensus 166 ~~~~~~~~~~~~~~-~d~~v~~~d~~~~~~-~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~ 243 (325)
T d1pgua1 166 HLKQSRPMRSMTVG-DDGSVVFYQGPPFKF-SASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKY 243 (325)
T ss_dssp EECSSSSCEEEEEE-TTTEEEEEETTTBEE-EEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEE
T ss_pred cccccccceEEEee-ccccccccccccccc-ceecccccCCCCccEEeeeccccceeccccccccceeeeeecccccccc
Confidence 99999886 55666 899999999987643 3344445678889999999997 68999999999999999999999999
Q ss_pred cccccCCeeEEEEc---CCCcEEEEeeCCceeeecCCCc----------------------------cccccCCCcEEEE
Q 014125 350 FQAAADTVNGFSFH---PFLPMAASSSGHRRFPVDDFED----------------------------LHLSGDENCVSVW 398 (430)
Q Consensus 350 ~~~~~~~v~~~~~~---~~~~~l~s~~~d~~~~vw~~~~----------------------------l~~~~~d~~i~~w 398 (430)
+.+|..++.++.|+ |++++|++++.|+.++|||.+. +++++.||.|++|
T Consensus 244 l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vw 323 (325)
T d1pgua1 244 IEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFY 323 (325)
T ss_dssp CCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEE
T ss_pred ccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEE
Confidence 99999888777766 7899999999999999996542 6777888888888
Q ss_pred ee
Q 014125 399 SF 400 (430)
Q Consensus 399 ~~ 400 (430)
|+
T Consensus 324 dl 325 (325)
T d1pgua1 324 EL 325 (325)
T ss_dssp ET
T ss_pred EC
Confidence 74
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.7e-33 Score=248.27 Aligned_cols=285 Identities=16% Similarity=0.201 Sum_probs=203.9
Q ss_pred ceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecccc
Q 014125 52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (430)
Q Consensus 52 ~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (430)
..+.+.+|.++|++++|+|+ .+|++|+.||+|++|++.......... ...+........+
T Consensus 45 ~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~---------------~~~~~~~~~~~~~---- 104 (355)
T d1nexb2 45 FLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFE---------------GHNSTVRCLDIVE---- 104 (355)
T ss_dssp EEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEEC---------------CCSSCEEEEEEEE----
T ss_pred EEEEEECCCCCEEEEEEcCC-CEEEEEecccccccccccccccccccc---------------ccccccccccccc----
Confidence 35578899999999999986 589999999999999998653321111 1111223334444
Q ss_pred CccCCCCceEEEEeCCCcEEEEeccCCceeeeeeccccc--------cc--------ccceEEEEECCCCcEEEE-EcCC
Q 014125 132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAV--------DE--------ITAAFSVAFNPTGTKIFA-GYNK 194 (430)
Q Consensus 132 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~--------~~--------~~~v~~~~~~~~~~~l~~-~~d~ 194 (430)
.+++..+++++.|+.|++||+.++............ .. ........+.+++.+++. ..|+
T Consensus 105 ---~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~ 181 (355)
T d1nexb2 105 ---YKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDN 181 (355)
T ss_dssp ---ETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTS
T ss_pred ---ccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecccc
Confidence 567889999999999999999876543322111000 00 001112345567778875 4899
Q ss_pred eEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEc
Q 014125 195 SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFS 274 (430)
Q Consensus 195 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~ 274 (430)
.|++||++... ......++...+.++.++| .+..+++++.|+.|++||.+++..+..+.+|...|.+++|+
T Consensus 182 ~i~~~d~~~~~--------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~ 252 (355)
T d1nexb2 182 TLIVWDVAQMK--------CLYILSGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS 252 (355)
T ss_dssp CEEEEETTTTE--------EEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC
T ss_pred eeeeeeccccc--------ceeeeeccccccccccccc-cceeeecccccceEEeeeccccccccccccccccccccccc
Confidence 99999997632 1112245667789999999 67799999999999999999999999999999999999996
Q ss_pred cCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEE-EEEcCCCCEEEEEccCCcEEEEEcCCCCeec-cccc
Q 014125 275 RDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRIL-FDIEPSGRHLGTGGQDGLVHIYDLQTGKWIS-GFQA 352 (430)
Q Consensus 275 ~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~ 352 (430)
+ ++|++++ .||.|++||+++...... .|...+.. ..+++++.+|++| .||.|+|||+++++++. .+.+
T Consensus 253 ~--~~l~~~~-~dg~i~iwd~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~~~~~~ 322 (355)
T d1nexb2 253 D--KFLVSAA-ADGSIRGWDANDYSRKFS------YHHTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVHANILK 322 (355)
T ss_dssp S--SEEEEEC-TTSEEEEEETTTCCEEEE------EECTTCCCCCEEEECSSEEEEE-ETTEEEEEETTTCCBCCSCTTT
T ss_pred c--ceeeeee-cccccccccccccceecc------cccCCceEEEEEcCCCCEEEEE-eCCEEEEEECCCCCEEEEEecC
Confidence 4 6899998 999999999998754332 23333433 3567777777665 58999999999999885 5678
Q ss_pred ccCCeeEEEEcCCCcEEEEeeCCceee
Q 014125 353 AADTVNGFSFHPFLPMAASSSGHRRFP 379 (430)
Q Consensus 353 ~~~~v~~~~~~~~~~~l~s~~~d~~~~ 379 (430)
|.++|.+++|+|+ .++++++.||.+.
T Consensus 323 ~~~~V~~v~~~~~-~~~~~~s~dg~~~ 348 (355)
T d1nexb2 323 DADQIWSVNFKGK-TLVAAVEKDGQSF 348 (355)
T ss_dssp TCSEEEEEEEETT-EEEEEEESSSCEE
T ss_pred CCCCEEEEEEcCC-eEEEEEECCCcEE
Confidence 9999999999986 4677777655443
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.98 E-value=1.9e-30 Score=232.35 Aligned_cols=272 Identities=11% Similarity=0.091 Sum_probs=186.5
Q ss_pred eecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceee------eeecccc-cccccceEEEEECCC-Cc
Q 014125 115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRC------TYRAYDA-VDEITAAFSVAFNPT-GT 186 (430)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~------~~~~~~~-~~~~~~v~~~~~~~~-~~ 186 (430)
.-.|...|+++++ .++++++++.|++|++||..+.+... ....+.. ..+......+..++. +.
T Consensus 10 ~~~H~~~I~~v~~---------~~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (393)
T d1sq9a_ 10 GKAHDADIFSVSA---------CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELC 80 (393)
T ss_dssp SSCSSSCEEEEEE---------CSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEE
T ss_pred CCcccCccEEEEE---------eCCEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCc
Confidence 3467789999998 24589999999999999987654211 1111111 001111122222222 23
Q ss_pred EEE-EEcCCeEEEEEcCCCCCcccccccc--cCCCCCCCcceEEEEEcCCC----CceEEEecCCCeEEEEEcCCce---
Q 014125 187 KIF-AGYNKSVRVFDVHRPGRDFEKYSTL--KGNKEGQAGIMSAIAFSPTH----TGMLAIGSYSQTSAIYREDNME--- 256 (430)
Q Consensus 187 ~l~-~~~d~~i~v~d~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~----~~~l~~~~~dg~v~~~d~~~~~--- 256 (430)
+++ ++.||.|++|++............. ......+...+..+++.++. ..++++++.||++++|++....
T Consensus 81 ~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~ 160 (393)
T d1sq9a_ 81 LVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADES 160 (393)
T ss_dssp EEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHH
T ss_pred EEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCccc
Confidence 444 4589999999987644332211111 11112344567778887743 4678999999999999975321
Q ss_pred ---------------eeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEe--ecccCCccceEEEE
Q 014125 257 ---------------LLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKL--YRSSEHTNQRILFD 319 (430)
Q Consensus 257 ---------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~~~~~v~~~~ 319 (430)
.......+...+++++|+|++ +|++++ .|+.|++||+.+........ ....+|...|.+++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs-~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~ 238 (393)
T d1sq9a_ 161 NSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGF-NNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVK 238 (393)
T ss_dssp HHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEEC-TTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEE
T ss_pred ceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEe-CCCcEEEEeecccccccccccccccccccceEEEcc
Confidence 011112344568999999998 788888 99999999999875432211 12356889999999
Q ss_pred EcCCCCEEEEEccCCc---EEEEEcCCCCeeccc-------------ccccCCeeEEEEcCCCcEEEEeeCCceeeecCC
Q 014125 320 IEPSGRHLGTGGQDGL---VHIYDLQTGKWISGF-------------QAAADTVNGFSFHPFLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 320 ~~~~~~~l~~~~~dg~---i~vwd~~~~~~~~~~-------------~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~ 383 (430)
|+|+|++|++|+.|++ |++||+.+++.+..+ .+|.+.|++++|+|++++|++++
T Consensus 239 ~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s---------- 308 (393)
T d1sq9a_ 239 FSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAG---------- 308 (393)
T ss_dssp ECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEE----------
T ss_pred cccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEEC----------
Confidence 9999999999999874 999999998877665 37999999999999999999998
Q ss_pred CccccccCCCcEEEEeecccccccccCCCCc
Q 014125 384 EDLHLSGDENCVSVWSFLYASMMENADGING 414 (430)
Q Consensus 384 ~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~ 414 (430)
.|++|++||+..++++..+.+|.+
T Consensus 309 -------~D~~v~vWd~~~g~~~~~l~gH~~ 332 (393)
T d1sq9a_ 309 -------WDGKLRFWDVKTKERITTLNMHCD 332 (393)
T ss_dssp -------TTSEEEEEETTTTEEEEEEECCGG
T ss_pred -------CCCEEEEEECCCCCEEEEECCcCC
Confidence 467788888877777777777654
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=6.3e-30 Score=218.87 Aligned_cols=243 Identities=14% Similarity=0.179 Sum_probs=183.1
Q ss_pred eeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcC
Q 014125 114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYN 193 (430)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d 193 (430)
...+|..+|.+++| +| |++|+.||+|++||+.++. .. |...|.++.+++++.++.++.|
T Consensus 8 ~l~gH~~~I~~l~~-------s~----l~sgs~Dg~v~~Wd~~~~~-----~~-----h~~~V~~~~~~~~~~~~s~s~D 66 (287)
T d1pgua2 8 TISGHNKGITALTV-------NP----LISGSYDGRIMEWSSSSMH-----QD-----HSNLIVSLDNSKAQEYSSISWD 66 (287)
T ss_dssp EECCCSSCEEEEET-------TT----TEEEETTSCEEETTTTEEE-----CC-----CCSCEEEEECCSTTCCEEEETT
T ss_pred EECCCCCceEEEEE-------Cc----EEEEeCCCeEEEEECCCCC-----CC-----CCCCEEEEEecCCCeEEEEeec
Confidence 44568899999999 43 8999999999999987643 22 3348999999988877668899
Q ss_pred CeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEE
Q 014125 194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQF 273 (430)
Q Consensus 194 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~ 273 (430)
+++++|++... .....+..+.+++ ++..++ ...++.+.+|+..+++.+..+..+ .. ..++
T Consensus 67 ~~v~~w~~~~~---------------~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~ 126 (287)
T d1pgua2 67 DTLKVNGITKH---------------EFGSQPKVASANN-DGFTAV-LTNDDDLLILQSFTGDIIKSVRLN-SP--GSAV 126 (287)
T ss_dssp TEEEETTEEEE---------------ECSSCEEEEEECS-SSEEEE-EETTSEEEEEETTTCCEEEEEECS-SC--EEEE
T ss_pred ccccccccccc---------------ccccceeeeeecc-CCceEE-Eeecccceeeeccceeeeeecccc-ce--eeee
Confidence 99999998541 1123467788887 444444 455677889999988888777633 33 3466
Q ss_pred ccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeec-cccc
Q 014125 274 SRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWIS-GFQA 352 (430)
Q Consensus 274 ~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~ 352 (430)
++++..+++++..++.+++|++....... .....+...+++++|+|++.+|++|+.||.|++||+.+++... .+.+
T Consensus 127 ~~~~~~~~v~~~~~~~v~~~~~~~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~ 203 (287)
T d1pgua2 127 SLSQNYVAVGLEEGNTIQVFKLSDLEVSF---DLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAF 203 (287)
T ss_dssp EECSSEEEEEETTTSCEEEEETTEEEEEE---ECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCC
T ss_pred eccCcceeeeccccceeeeeeccccceee---eeeeccCCceeEEEeccCccccccccccccccceeecccccccccccc
Confidence 77888898888344679999987553322 2224577789999999999999999999999999999887654 4678
Q ss_pred ccCCeeEEEEcCCC----------cEEEEeeCCceeeecCCCc-------------------------cccccCCCcEEE
Q 014125 353 AADTVNGFSFHPFL----------PMAASSSGHRRFPVDDFED-------------------------LHLSGDENCVSV 397 (430)
Q Consensus 353 ~~~~v~~~~~~~~~----------~~l~s~~~d~~~~vw~~~~-------------------------l~~~~~d~~i~~ 397 (430)
|...|.+++|+|.+ .+|++++.|+.++||+.+. ++++|.|++|++
T Consensus 204 h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~~l~s~g~D~~v~i 283 (287)
T d1pgua2 204 RTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKR 283 (287)
T ss_dssp CSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTEEEEEETTSCEEE
T ss_pred cccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCCEEEEEECCCeEEE
Confidence 99999999999854 5677777777777774321 666777777777
Q ss_pred Eee
Q 014125 398 WSF 400 (430)
Q Consensus 398 w~~ 400 (430)
|++
T Consensus 284 W~i 286 (287)
T d1pgua2 284 WNV 286 (287)
T ss_dssp EEE
T ss_pred EEE
Confidence 765
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.97 E-value=5.3e-30 Score=226.57 Aligned_cols=282 Identities=12% Similarity=0.072 Sum_probs=201.5
Q ss_pred eEEEECc-CCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEE
Q 014125 64 KGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFA 142 (430)
Q Consensus 64 ~~~~~sp-~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 142 (430)
..-.||| ||+++|+++. |.|++||+.++.. ....|+..|.+++| +|||+.|+
T Consensus 6 ~~~~fSP~dG~~~a~~~~-g~v~v~d~~~~~~-------------------~~~~~~~~v~~~~~-------spDg~~l~ 58 (360)
T d1k32a3 6 FAEDFSPLDGDLIAFVSR-GQAFIQDVSGTYV-------------------LKVPEPLRIRYVRR-------GGDTKVAF 58 (360)
T ss_dssp GEEEEEECGGGCEEEEET-TEEEEECTTSSBE-------------------EECSCCSCEEEEEE-------CSSSEEEE
T ss_pred hcccccCCCCCEEEEEEC-CeEEEEECCCCcE-------------------EEccCCCCEEEEEE-------CCCCCEEE
Confidence 4567999 9999999875 6999999976532 23467789999999 78999998
Q ss_pred EEeCCC--cEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCCcccccccccCCCC
Q 014125 143 STTRDH--PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFEKYSTLKGNKE 219 (430)
Q Consensus 143 ~~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~ 219 (430)
+++.+. .|++||+.+++.... ..+. ..+.+++|+|++++|++ +.++.+++|++..... .....
T Consensus 59 ~~~~~~g~~v~v~d~~~~~~~~~-~~~~-----~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~--------~~~~~ 124 (360)
T d1k32a3 59 IHGTREGDFLGIYDYRTGKAEKF-EENL-----GNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKP--------TVIER 124 (360)
T ss_dssp EEEETTEEEEEEEETTTCCEEEC-CCCC-----CSEEEEEECTTSSEEEEEETTSEEEEEETTTCCE--------EEEEE
T ss_pred EEEcCCCCEEEEEECCCCcEEEe-eCCC-----ceEEeeeecccccccceeccccccccccccccce--------eeeee
Confidence 776553 799999998876543 3333 38999999999999995 5899999999976421 11224
Q ss_pred CCCcceEEEEEcCCCCceEEEe----------cCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCe
Q 014125 220 GQAGIMSAIAFSPTHTGMLAIG----------SYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPY 289 (430)
Q Consensus 220 ~~~~~v~~~~~~~~~~~~l~~~----------~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~ 289 (430)
.+...+.+++|+|+ +.+|+.+ ..++.+++||+.+++..... .+...+..++|+|+|++|++++ .++.
T Consensus 125 ~~~~~~~~~~~spd-g~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~s-~~~~ 201 (360)
T d1k32a3 125 SREAMITDFTISDN-SRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT-TENSHDYAPAFDADSKNLYYLS-YRSL 201 (360)
T ss_dssp CSSSCCCCEEECTT-SCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECS-CSSSBEEEEEECTTSCEEEEEE-SCCC
T ss_pred cccccccchhhccc-eeeeeeeccccccceeeccccceeeeccccCceeeec-ccccccccccccCCCCEEEEEe-CCCc
Confidence 56667889999995 5566543 34557999999988766544 4667889999999999999999 8999
Q ss_pred EEEEeCCCCceE------EEEee-c--------------------------------ccCCccceEEEEEcCCC------
Q 014125 290 ILCWDLRKAVQV------VYKLY-R--------------------------------SSEHTNQRILFDIEPSG------ 324 (430)
Q Consensus 290 i~i~d~~~~~~~------~~~~~-~--------------------------------~~~~~~~v~~~~~~~~~------ 324 (430)
+.+||....... ..... . ..........+...+++
T Consensus 202 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (360)
T d1k32a3 202 DPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSV 281 (360)
T ss_dssp CCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEEC
T ss_pred eEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEE
Confidence 999987543211 00000 0 00011122233333322
Q ss_pred -------CEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCCCccccccCCCcEEE
Q 014125 325 -------RHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFEDLHLSGDENCVSV 397 (430)
Q Consensus 325 -------~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~l~~~~~d~~i~~ 397 (430)
.++++++.++.|++||+.+++. ..|.+.|.+++|+|||++|++++ .||.|++
T Consensus 282 ~~~~~~~~~~~~~~~~~~i~~~d~~~~~~----~~~~~~v~~~~~SpDG~~l~~~~-----------------~Dg~i~v 340 (360)
T d1k32a3 282 PVHGEFAAYYQGAPEKGVLLKYDVKTRKV----TEVKNNLTDLRLSADRKTVMVRK-----------------DDGKIYT 340 (360)
T ss_dssp CCCCSHHHHHHCCCCCEEEEEEETTTCCE----EEEEEEEEEEEECTTSCEEEEEE-----------------TTSCEEE
T ss_pred EecCCCeeEEEecCCCCEEEEEECCCCeE----EEecCCcCEEEECCCCCEEEEEE-----------------CCCeEEE
Confidence 2345666788999999998764 34556799999999999999988 4677888
Q ss_pred EeecccccccccC
Q 014125 398 WSFLYASMMENAD 410 (430)
Q Consensus 398 w~~~~~~~~~~~~ 410 (430)
|++..++....+.
T Consensus 341 ~d~~~~~~~~~~~ 353 (360)
T d1k32a3 341 FPLEKPEDERTVE 353 (360)
T ss_dssp EESSCTTSCEECC
T ss_pred EECCCCCcceEEE
Confidence 8887766655544
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=5.2e-28 Score=211.66 Aligned_cols=259 Identities=18% Similarity=0.313 Sum_probs=197.8
Q ss_pred eeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEc
Q 014125 114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGY 192 (430)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~ 192 (430)
...+|...|.+ ++ +++|++|++|+.||+|++||+.+++++..+..|.. .|.+++|+|+ +|+ ++.
T Consensus 11 ~l~GH~~~V~s-~~-------~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~-----~V~~v~~~~~--~l~s~s~ 75 (342)
T d2ovrb2 11 VLKGHDDHVIT-CL-------QFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTG-----GVWSSQMRDN--IIISGST 75 (342)
T ss_dssp EEECSTTSCEE-EE-------EEETTEEEEEETTSCEEEEETTTCCEEEECCCCSS-----CEEEEEEETT--EEEEEET
T ss_pred EECCcCCceEE-EE-------EECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCC-----CEEEEEeCCC--cccccee
Confidence 34567777754 23 33688999999999999999999999998887665 8999999875 565 569
Q ss_pred CCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEE
Q 014125 193 NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQ 272 (430)
Q Consensus 193 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~ 272 (430)
|+.+++|+....... .....+...+......+ ..++.+..|+.+.+|+..+++....+..+..... .
T Consensus 76 D~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~---~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~--~ 142 (342)
T d2ovrb2 76 DRTLKVWNAETGECI--------HTLYGHTSTVRCMHLHE---KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVR--C 142 (342)
T ss_dssp TSCEEEEETTTTEEE--------EEECCCSSCEEEEEEET---TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEE--E
T ss_pred cccccccccccccce--------ecccccceeEeeeeccc---ccccccccceeEEEeecccccceeeeecccccce--e
Confidence 999999998763211 11123334455555543 4778889999999999999887777664444333 3
Q ss_pred EccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccccc
Q 014125 273 FSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQA 352 (430)
Q Consensus 273 ~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 352 (430)
+.+....+++++ .|+.|++||.+...... .+ .+|...+..+ ++++.+|++|+.||.|++||++.++.+..+.+
T Consensus 143 ~~~~~~~~~~~~-~d~~i~~~d~~~~~~~~-~~---~~~~~~~~~~--~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~ 215 (342)
T d2ovrb2 143 VQYDGRRVVSGA-YDFMVKVWDPETETCLH-TL---QGHTNRVYSL--QFDGIHVVSGSLDTSIRVWDVETGNCIHTLTG 215 (342)
T ss_dssp EEECSSCEEEEE-TTSCEEEEEGGGTEEEE-EE---CCCSSCEEEE--EECSSEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred eccccceeeeec-CCCeEEEeecccceeeE-EE---cCcccccccc--cCCCCEEEEEeCCCeEEEeecccceeeeEecc
Confidence 445666788888 89999999998764332 22 4555555544 45688999999999999999999999999999
Q ss_pred ccCCeeEEEEcCCCcEEEEeeCCceeeecCCCc--------------------------cccccCCCcEEEEeecccccc
Q 014125 353 AADTVNGFSFHPFLPMAASSSGHRRFPVDDFED--------------------------LHLSGDENCVSVWSFLYASMM 406 (430)
Q Consensus 353 ~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~--------------------------l~~~~~d~~i~~w~~~~~~~~ 406 (430)
|...+.++++++ ++|++++.|+.+++|+... +++++.||.|++||+..++.+
T Consensus 216 ~~~~v~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~~i 293 (342)
T d2ovrb2 216 HQSLTSGMELKD--NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFI 293 (342)
T ss_dssp CCSCEEEEEEET--TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEE
T ss_pred cccceeEEecCC--CEEEEEcCCCEEEEEecccccccccccccceeeeceeecccCCCeeEEEcCCCEEEEEECCCCCEE
Confidence 999999888765 6999999999999995432 788999999999999998887
Q ss_pred ccc
Q 014125 407 ENA 409 (430)
Q Consensus 407 ~~~ 409 (430)
..+
T Consensus 294 ~~~ 296 (342)
T d2ovrb2 294 RNL 296 (342)
T ss_dssp EEE
T ss_pred EEE
Confidence 655
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=6.6e-27 Score=199.87 Aligned_cols=245 Identities=18% Similarity=0.283 Sum_probs=189.9
Q ss_pred cCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCe
Q 014125 117 TEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKS 195 (430)
Q Consensus 117 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~ 195 (430)
.+...|+|++| ++++|++|+.||+|++||+.+++++..+..|.. .|.+++| ++++|+ ++.|+.
T Consensus 13 ~~~~~V~c~~~---------d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~-----~V~~v~~--~~~~l~s~s~D~~ 76 (293)
T d1p22a2 13 ETSKGVYCLQY---------DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTG-----SVLCLQY--DERVIITGSSDST 76 (293)
T ss_dssp SSCCCEEEEEC---------CSSEEEEEESSSCEEEEESSSCCEEEEECCCSS-----CEEEEEC--CSSEEEEEETTSC
T ss_pred CCCCCEEEEEE---------cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCC-----CEeeeec--ccceeeccccccc
Confidence 45567888766 688999999999999999999999999987765 8988887 566777 559999
Q ss_pred EEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCce---eeEEeeccccCeEEEE
Q 014125 196 VRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME---LLYVLHGQEGGVTHVQ 272 (430)
Q Consensus 196 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~---~~~~~~~~~~~i~~~~ 272 (430)
|++|++......... ...... ...+.+ ....++++..++.+.+|+..... ....+..|...+..+.
T Consensus 77 i~~~~~~~~~~~~~~--------~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 145 (293)
T d1p22a2 77 VRVWDVNTGEMLNTL--------IHHCEA--VLHLRF-NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVD 145 (293)
T ss_dssp EEEEESSSCCEEEEE--------CCCCSC--EEEEEC-CTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEE
T ss_pred ccccccccccccccc--------cccccc--cccccc-cccceeecccccceeEeeccccccccccccccccccccccce
Confidence 999999874321111 111111 223333 44588999999999999988764 3445566778888777
Q ss_pred EccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccccc
Q 014125 273 FSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQA 352 (430)
Q Consensus 273 ~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 352 (430)
+. ...+++++ .|+.|++||+++..... .+ .++...+..+.++ +.++++++.||.|++||+++.+.+..+.+
T Consensus 146 ~~--~~~~~~~s-~d~~i~~~d~~~~~~~~-~~---~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 216 (293)
T d1p22a2 146 FD--DKYIVSAS-GDRTIKVWNTSTCEFVR-TL---NGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEG 216 (293)
T ss_dssp EE--TTEEEEEE-TTSEEEEEETTTCCEEE-EE---ECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred ec--cccccccc-CCCceeeecCCCCcEEE-EE---cccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeecc
Confidence 75 45678888 89999999999875432 22 4566777777665 56899999999999999999999999998
Q ss_pred ccCCeeEEEEcCCCcEEEEeeCCceeeecCC--------------------------------CccccccCCCcEEEEe
Q 014125 353 AADTVNGFSFHPFLPMAASSSGHRRFPVDDF--------------------------------EDLHLSGDENCVSVWS 399 (430)
Q Consensus 353 ~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~--------------------------------~~l~~~~~d~~i~~w~ 399 (430)
|...+.. +.+++.+|++++.||.+++|+. ..|+++|.|++|++||
T Consensus 217 ~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 217 HEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWD 293 (293)
T ss_dssp CSSCEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSSCEEECCSSSEEEEEC
T ss_pred cceeeee--ccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEcCCEEEEEecCCEEEEeC
Confidence 8888875 4567889999999999999841 2378889999999997
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.96 E-value=5.8e-27 Score=211.67 Aligned_cols=303 Identities=10% Similarity=-0.003 Sum_probs=206.4
Q ss_pred ceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEE
Q 014125 73 SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHL 152 (430)
Q Consensus 73 ~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~v 152 (430)
-++++.+.||+|+|||+.+++.+..+ ..+..+..++| +|||++|++++.|++|++
T Consensus 33 ~~~V~~~~dg~v~vwD~~t~~~~~~l------------------~~g~~~~~vaf-------SPDGk~l~~~~~d~~v~v 87 (426)
T d1hzua2 33 LFSVTLRDAGQIALVDGDSKKIVKVI------------------DTGYAVHISRM-------SASGRYLLVIGRDARIDM 87 (426)
T ss_dssp EEEEEETTTTEEEEEETTTCSEEEEE------------------ECCSSEEEEEE-------CTTSCEEEEEETTSEEEE
T ss_pred EEEEEEcCCCEEEEEECCCCcEEEEE------------------eCCCCeeEEEE-------CCCCCEEEEEeCCCCEEE
Confidence 35688899999999999987543222 22346788888 889999999999999999
Q ss_pred EeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCCcccccc---cccCCCCCCCcceEE
Q 014125 153 WDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYS---TLKGNKEGQAGIMSA 227 (430)
Q Consensus 153 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~~~~~---~~~~~~~~~~~~v~~ 227 (430)
||+.+++............+...+.+++|+|||++++ ++ .++.+++||............ ........+......
T Consensus 88 wd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (426)
T d1hzua2 88 IDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAA 167 (426)
T ss_dssp EETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEE
T ss_pred EEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeE
Confidence 9999988655444333333444667788899999876 33 789999999887432111100 000111123344566
Q ss_pred EEEcCCCCceEEEecCCCeEEEEEcCCceee-EEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEE--
Q 014125 228 IAFSPTHTGMLAIGSYSQTSAIYREDNMELL-YVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYK-- 304 (430)
Q Consensus 228 ~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~-- 304 (430)
+.+++++..++.+....+.+.+++....... .....+...+..+.|+|++++++++...+..+.+++..+.......
T Consensus 168 i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 247 (426)
T d1hzua2 168 IIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDV 247 (426)
T ss_dssp EEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEEC
T ss_pred EEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEecc
Confidence 7777866655566666677777777665432 2333567788999999999999988867778888887654321100
Q ss_pred ------------------------------------------------eecccCCccceEEEEEcCCCCEEEE-------
Q 014125 305 ------------------------------------------------LYRSSEHTNQRILFDIEPSGRHLGT------- 329 (430)
Q Consensus 305 ------------------------------------------------~~~~~~~~~~v~~~~~~~~~~~l~~------- 329 (430)
.....+|...+..++|+|++++|++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s 327 (426)
T d1hzua2 248 GKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPD 327 (426)
T ss_dssp SSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSS
T ss_pred CCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCC
Confidence 0011345667888999999999994
Q ss_pred EccCCcEEEEEcCCCCeecccc---------cccCCeeEEEEcCCCcEEEEeeCCceeeecCCCccccccCCCcEEEEee
Q 014125 330 GGQDGLVHIYDLQTGKWISGFQ---------AAADTVNGFSFHPFLPMAASSSGHRRFPVDDFEDLHLSGDENCVSVWSF 400 (430)
Q Consensus 330 ~~~dg~i~vwd~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~ 400 (430)
++.|++|+|||+.+++...++. .|...|.+++|+|||++++.+... ..+.++.|++||.
T Consensus 328 ~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~------------~~~~~~~i~v~D~ 395 (426)
T d1hzua2 328 ARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWN------------GKNDSSALVVVDD 395 (426)
T ss_dssp HHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECC------------CTTSCCEEEEEET
T ss_pred cccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEec------------CCCCCCeEEEEEC
Confidence 5568899999999988765442 345569999999999966443210 1135677777777
Q ss_pred cccccccccCCC
Q 014125 401 LYASMMENADGI 412 (430)
Q Consensus 401 ~~~~~~~~~~~~ 412 (430)
.+.+.+..+.++
T Consensus 396 ~T~k~~~~i~~~ 407 (426)
T d1hzua2 396 KTLKLKAVVKDP 407 (426)
T ss_dssp TTTEEEEEECCT
T ss_pred CCCeEEEEECCC
Confidence 777666555543
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=2.9e-27 Score=206.60 Aligned_cols=251 Identities=10% Similarity=0.014 Sum_probs=174.6
Q ss_pred eecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCc-EEEE-Ec
Q 014125 115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGT-KIFA-GY 192 (430)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~-~~ 192 (430)
.-.|...|++++| +|++++|++|+.||+|++||+.++.....+... ..|..+|.+++|+|++. +|++ +.
T Consensus 7 ~~~h~d~I~~l~f-------sp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~--~~h~~~V~~v~f~~~~~~~l~sg~~ 77 (342)
T d1yfqa_ 7 EQAPKDYISDIKI-------IPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQS--LRYKHPLLCCNFIDNTDLQIYVGTV 77 (342)
T ss_dssp SSCCSSCEEEEEE-------EGGGTEEEEEETTSEEEEEEEETTTTEEEEEEE--EECSSCEEEEEEEESSSEEEEEEET
T ss_pred CCCCCCCEEEEEE-------eCCCCEEEEEECCCeEEEEEccCCCcceEEEEe--cCCCCCEEEEEEeCCCCCEEEEccc
Confidence 3456789999999 668999999999999999999876544433321 12334899999998754 5664 58
Q ss_pred CCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEE----eecc--cc
Q 014125 193 NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYV----LHGQ--EG 266 (430)
Q Consensus 193 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~----~~~~--~~ 266 (430)
|+.|++|++........ ....+........+.+ +...+++++.++++++||++....... ...+ ..
T Consensus 78 d~~v~~w~~~~~~~~~~-------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~ 149 (342)
T d1yfqa_ 78 QGEILKVDLIGSPSFQA-------LTNNEANLGICRICKY-GDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKV 149 (342)
T ss_dssp TSCEEEECSSSSSSEEE-------CBSCCCCSCEEEEEEE-TTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSS
T ss_pred ccceeeeeccccccccc-------cccccccccccccccc-ccccccccccccccceeeccccccceeeecccccccccc
Confidence 99999999976432211 1122223334444555 677999999999999999876543222 2222 22
Q ss_pred CeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEc-CCCCEEEEEccCCcEEEEEcCCCC
Q 014125 267 GVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIE-PSGRHLGTGGQDGLVHIYDLQTGK 345 (430)
Q Consensus 267 ~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~ 345 (430)
......+.+.+..+++++ .|+.|++||++........... ......+.+..+. +++..+++++.||.+.+|+.....
T Consensus 150 ~~~~~~~~~~~~~~~~~~-~d~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~ 227 (342)
T d1yfqa_ 150 KNKIFTMDTNSSRLIVGM-NNSQVQWFRLPLCEDDNGTIEE-SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQG 227 (342)
T ss_dssp CCCEEEEEECSSEEEEEE-STTEEEEEESSCCTTCCCEEEE-CSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTC
T ss_pred eeeeeeeeccCCceeeec-CCCcEEEEecccCcccceeeee-cccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCc
Confidence 445667788889999999 9999999999876543222222 2334445555554 467889999999999999987543
Q ss_pred ee---------------cccccccCCeeEEEEcCCCcEEEEeeCCceeeecCCC
Q 014125 346 WI---------------SGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFE 384 (430)
Q Consensus 346 ~~---------------~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~ 384 (430)
.. .....|...|++++|+|++++|++|+.||.|++||.+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~ 281 (342)
T d1yfqa_ 228 DDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQ 281 (342)
T ss_dssp CSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETT
T ss_pred ceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECC
Confidence 21 1223466689999999999999999977776666544
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.95 E-value=7.1e-27 Score=210.58 Aligned_cols=319 Identities=8% Similarity=-0.030 Sum_probs=195.9
Q ss_pred eeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccC
Q 014125 53 FRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS 132 (430)
Q Consensus 53 ~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 132 (430)
...+..|. .+..++|||||++|++++.||+|++||+.+++... ...+..+..-..+.++|
T Consensus 55 ~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~----------------~~~i~~~~~~~~~~~s~--- 114 (432)
T d1qksa2 55 KTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTT----------------VAEIKIGSEARSIETSK--- 114 (432)
T ss_dssp EEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCE----------------EEEEECCSEEEEEEECC---
T ss_pred EEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceE----------------EEEEecCCCCCCeEEec---
Confidence 33454553 59999999999999999999999999998764211 11111122223333332
Q ss_pred ccCCCCceE-EEEeCCCcEEEEeccCCceeeeeecccc------cccccceEEEEECCCCcEEEEE--cCCeEEEEEcCC
Q 014125 133 ASDPTSCVF-ASTTRDHPIHLWDATTGLLRCTYRAYDA------VDEITAAFSVAFNPTGTKIFAG--YNKSVRVFDVHR 203 (430)
Q Consensus 133 ~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~--~d~~i~v~d~~~ 203 (430)
.++|||++| ++++.++.|++||..+++.+..+..+.. .........+.++|++..++.+ .++.|.+|+...
T Consensus 115 ~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~ 194 (432)
T d1qksa2 115 MEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTD 194 (432)
T ss_dssp STTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTC
T ss_pred ccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccC
Confidence 238899976 6788899999999999998887765432 1123356678999999887743 679999999865
Q ss_pred CCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeec-----cccCeEEEEEccCCC
Q 014125 204 PGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG-----QEGGVTHVQFSRDGN 278 (430)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~-----~~~~i~~~~~~~~~~ 278 (430)
.... . ... ..+...+..++|+|++..+++++..++.+.++|..+++....+.. |........+...+.
T Consensus 195 ~~~~-~-~~~-----i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~ 267 (432)
T d1qksa2 195 LNNL-K-TTE-----ISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGP 267 (432)
T ss_dssp SSEE-E-EEE-----EECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEE
T ss_pred CCcc-e-EEE-----EcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCc
Confidence 3211 0 011 122345789999996665666667778999999998877665542 223334444444444
Q ss_pred EEEEEecCCCeEEEEeCCCCce------EEEEeecc----------------------cCCccceEEEEEcCCCCEEEEE
Q 014125 279 YLYTGGRKDPYILCWDLRKAVQ------VVYKLYRS----------------------SEHTNQRILFDIEPSGRHLGTG 330 (430)
Q Consensus 279 ~l~~~~~~d~~i~i~d~~~~~~------~~~~~~~~----------------------~~~~~~v~~~~~~~~~~~l~~~ 330 (430)
...+....++.+.+|+...... ........ ..+.....++++ ||++.++++
T Consensus 268 ~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~v-pDg~~la~~ 346 (432)
T d1qksa2 268 VWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAV-FDIKAMTGD 346 (432)
T ss_dssp EEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEE-EEGGGCCCS
T ss_pred eecccccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeEEEE-Eechhhccc
Confidence 4444433467777776544311 11111000 011111112333 667777777
Q ss_pred ccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeC-----CceeeecCCCccccccCCCcEEEEeeccccc
Q 014125 331 GQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSG-----HRRFPVDDFEDLHLSGDENCVSVWSFLYASM 405 (430)
Q Consensus 331 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-----d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~~ 405 (430)
+.|+.+++|++.++. .+..|...|.+++|+|||+.++.+.. ++.|.||| +.+.++|+.-.+..
T Consensus 347 s~d~~~k~w~~~~~~---~l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D---------~~T~k~~~~i~~~~ 414 (432)
T d1qksa2 347 GSDPEFKTLPIAEWA---GITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD---------DKTLELKHVIKDER 414 (432)
T ss_dssp SSCCCEEEECHHHHH---TCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEE---------TTTTEEEEEECCTT
T ss_pred ccCCceEeccccccc---ccCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEE---------CCCceEEeEecCCC
Confidence 777777777765432 23356678999999999998865542 34455553 23445555444444
Q ss_pred ccccCC
Q 014125 406 MENADG 411 (430)
Q Consensus 406 ~~~~~~ 411 (430)
+..+.|
T Consensus 415 ~~tp~G 420 (432)
T d1qksa2 415 LVTPTG 420 (432)
T ss_dssp CCSEEE
T ss_pred ccCCCe
Confidence 444444
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.95 E-value=2.1e-24 Score=185.36 Aligned_cols=271 Identities=14% Similarity=0.167 Sum_probs=203.4
Q ss_pred EEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceE-EEEeCCCcEEEE
Q 014125 75 FLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF-ASTTRDHPIHLW 153 (430)
Q Consensus 75 l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~vw 153 (430)
.++++.|++|.|||+.+++.... +..+.....++| +|+|++| ++++.++.|++|
T Consensus 5 yV~~~~~~~v~v~D~~t~~~~~~------------------i~~g~~p~~va~-------spdG~~l~v~~~~~~~i~v~ 59 (301)
T d1l0qa2 5 YIANSESDNISVIDVTSNKVTAT------------------IPVGSNPMGAVI-------SPDGTKVYVANAHSNDVSII 59 (301)
T ss_dssp EEEETTTTEEEEEETTTTEEEEE------------------EECSSSEEEEEE-------CTTSSEEEEEEGGGTEEEEE
T ss_pred EEEECCCCEEEEEECCCCeEEEE------------------EECCCCceEEEE-------eCCCCEEEEEECCCCEEEEE
Confidence 34677899999999988754322 222345667777 8899877 566788999999
Q ss_pred eccCCceeeeeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEc
Q 014125 154 DATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFS 231 (430)
Q Consensus 154 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 231 (430)
|+.+++.+..+..+. .+..+.|++++..++ ++ .++.+.+|+....... ..+ .+.....++.|+
T Consensus 60 d~~t~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-----~~~~~~~~~~~~ 124 (301)
T d1l0qa2 60 DTATNNVIATVPAGS------SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVA----GTV-----KTGKSPLGLALS 124 (301)
T ss_dssp ETTTTEEEEEEECSS------SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE----EEE-----ECSSSEEEEEEC
T ss_pred ECCCCceeeeeeccc------cccccccccccccccccccccceeeecccccceee----eec-----cccccceEEEee
Confidence 999999988877654 567899999998777 44 6789999998763211 111 223457889999
Q ss_pred CCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCC
Q 014125 232 PTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEH 311 (430)
Q Consensus 232 ~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 311 (430)
|++..+++++..++.+.+|+..+......+.. ...+..++++|++..+++++..++.+.+|+....... ... ..
T Consensus 125 ~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~ 198 (301)
T d1l0qa2 125 PDGKKLYVTNNGDKTVSVINTVTKAVINTVSV-GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVI-DTV----KV 198 (301)
T ss_dssp TTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE-EEE----EC
T ss_pred cCCCeeeeeeccccceeeeeccccceeeeccc-CCCceEEEeeccccceeeecccccccccccccceeee-ecc----cc
Confidence 97777778888899999999999988887774 4567899999999999988855677888887765332 222 23
Q ss_pred ccceEEEEEcCCCCEEEEEcc---CCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEE-EeeCCceeeecCCCccc
Q 014125 312 TNQRILFDIEPSGRHLGTGGQ---DGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAA-SSSGHRRFPVDDFEDLH 387 (430)
Q Consensus 312 ~~~v~~~~~~~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~d~~~~vw~~~~l~ 387 (430)
...+..+++++++..++.++. ++.|++||+.+++.+..+..+ ..+.+++|+|+|++|+ +++
T Consensus 199 ~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~-~~~~~va~spdg~~l~va~~-------------- 263 (301)
T d1l0qa2 199 EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG-PDPAGIAVTPDGKKVYVALS-------------- 263 (301)
T ss_dssp SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEET--------------
T ss_pred cCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCC-CCEEEEEEeCCCCEEEEEEC--------------
Confidence 455778999999998776543 467999999999988877644 5689999999999775 444
Q ss_pred cccCCCcEEEEeeccccccccc
Q 014125 388 LSGDENCVSVWSFLYASMMENA 409 (430)
Q Consensus 388 ~~~~d~~i~~w~~~~~~~~~~~ 409 (430)
.|+.|++||+..++.+..+
T Consensus 264 ---~~~~i~v~D~~t~~~~~~~ 282 (301)
T d1l0qa2 264 ---FCNTVSVIDTATNTITATM 282 (301)
T ss_dssp ---TTTEEEEEETTTTEEEEEE
T ss_pred ---CCCeEEEEECCCCeEEEEE
Confidence 4677788887777766555
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.94 E-value=8.2e-26 Score=199.38 Aligned_cols=251 Identities=12% Similarity=0.085 Sum_probs=185.0
Q ss_pred cCCCceeEEEECcCCceEEEecCCC--eEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccC
Q 014125 58 IPNNFLKGIKWSPDGSSFLTSSEDK--TLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASD 135 (430)
Q Consensus 58 ~h~~~v~~~~~sp~~~~l~s~~~dg--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 135 (430)
+|...|++++|+|||++|++++.+. .|++||+.+++. .....+...|.+++| +
T Consensus 40 ~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~------------------~~~~~~~~~v~~~~~-------s 94 (360)
T d1k32a3 40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKA------------------EKFEENLGNVFAMGV-------D 94 (360)
T ss_dssp SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCE------------------EECCCCCCSEEEEEE-------C
T ss_pred cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcE------------------EEeeCCCceEEeeee-------c
Confidence 7899999999999999998877653 799999987632 133456678999999 7
Q ss_pred CCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-----------cCCeEEEEEcCCC
Q 014125 136 PTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-----------YNKSVRVFDVHRP 204 (430)
Q Consensus 136 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-----------~d~~i~v~d~~~~ 204 (430)
|++++|++++.++.+++|++.+++....+..+.. .+.+++|+|+|++|+.+ .++.+++|++...
T Consensus 95 pdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~ 169 (360)
T d1k32a3 95 RNGKFAVVANDRFEIMTVDLETGKPTVIERSREA-----MITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR 169 (360)
T ss_dssp TTSSEEEEEETTSEEEEEETTTCCEEEEEECSSS-----CCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT
T ss_pred ccccccceeccccccccccccccceeeeeecccc-----cccchhhccceeeeeeeccccccceeeccccceeeeccccC
Confidence 8999999999999999999999998888776655 77899999999999832 1346899998763
Q ss_pred CCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCcee-------eEEeec--------------
Q 014125 205 GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL-------LYVLHG-------------- 263 (430)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~-------~~~~~~-------------- 263 (430)
.. .....+...+..++|+| +++.|++++.++.+.+|+...... ...+..
T Consensus 170 ~~---------~~~~~~~~~~~~~~~sp-dg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 239 (360)
T d1k32a3 170 KI---------FAATTENSHDYAPAFDA-DSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRS 239 (360)
T ss_dssp EE---------EECSCSSSBEEEEEECT-TSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGG
T ss_pred ce---------eeecccccccccccccC-CCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCc
Confidence 11 11134456688999999 567889999999999998654321 111110
Q ss_pred ----------------------cccCeEEEEEccCCC-------------EEEEEecCCCeEEEEeCCCCceEEEEeecc
Q 014125 264 ----------------------QEGGVTHVQFSRDGN-------------YLYTGGRKDPYILCWDLRKAVQVVYKLYRS 308 (430)
Q Consensus 264 ----------------------~~~~i~~~~~~~~~~-------------~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~ 308 (430)
..+....+...+++. ++++++ .++.|++||+.+.+..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~------- 311 (360)
T d1k32a3 240 MTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAP-EKGVLLKYDVKTRKVT------- 311 (360)
T ss_dssp GSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCC-CCEEEEEEETTTCCEE-------
T ss_pred CcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecC-CCCEEEEEECCCCeEE-------
Confidence 111222333333222 233333 6789999999886432
Q ss_pred cCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCe
Q 014125 309 SEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTV 357 (430)
Q Consensus 309 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v 357 (430)
.+...+..++|+|||++|++++.||.|++||+++++...++..+..++
T Consensus 312 -~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~~~~~d~~~~ 359 (360)
T d1k32a3 312 -EVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVETDKRPL 359 (360)
T ss_dssp -EEEEEEEEEEECTTSCEEEEEETTSCEEEEESSCTTSCEECCCCSSCE
T ss_pred -EecCCcCEEEECCCCCEEEEEECCCeEEEEECCCCCcceEEEeccccc
Confidence 234568899999999999999999999999999998877776655543
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.94 E-value=4.4e-24 Score=192.19 Aligned_cols=307 Identities=9% Similarity=-0.044 Sum_probs=211.9
Q ss_pred CcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCC
Q 014125 69 SPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDH 148 (430)
Q Consensus 69 sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg 148 (430)
+++.-++++.+.||+|.|||..+++....+ ..+..+..++| ||||+++++++.||
T Consensus 29 ~~~~~~~v~~~d~g~v~v~D~~t~~v~~~~------------------~~g~~~~~v~f-------SpDG~~l~~~s~dg 83 (432)
T d1qksa2 29 DLENLFSVTLRDAGQIALIDGSTYEIKTVL------------------DTGYAVHISRL-------SASGRYLFVIGRDG 83 (432)
T ss_dssp CGGGEEEEEETTTTEEEEEETTTCCEEEEE------------------ECSSCEEEEEE-------CTTSCEEEEEETTS
T ss_pred CCCcEEEEEEcCCCEEEEEECCCCcEEEEE------------------eCCCCeeEEEE-------CCCCCEEEEEcCCC
Confidence 333345689999999999999987553222 22346888888 88999999999999
Q ss_pred cEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCCcccccc---cccCCCCCCCc
Q 014125 149 PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYS---TLKGNKEGQAG 223 (430)
Q Consensus 149 ~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~~~~~---~~~~~~~~~~~ 223 (430)
.+++||+.+++............+...+.+..|+|||++|+ ++ .++.|++||..+......... ........+..
T Consensus 84 ~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~ 163 (432)
T d1qksa2 84 KVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEP 163 (432)
T ss_dssp EEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCC
T ss_pred CEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCC
Confidence 99999998876543333222222333566677889999875 44 799999999987432211100 00111123445
Q ss_pred ceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEee-ccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEE
Q 014125 224 IMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH-GQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVV 302 (430)
Q Consensus 224 ~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~ 302 (430)
....+.++|++..++++...++.|.+||..+.+...... .+...+..++|+|+|+++++++..++.+.++|..+.....
T Consensus 164 ~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~ 243 (432)
T d1qksa2 164 RVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVA 243 (432)
T ss_dssp CEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred ceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEE
Confidence 677899999777777888889999999998876543332 2456788999999999999888678899999998875443
Q ss_pred EEeec-ccCCccceEEEEEcCCCCEEEEEc-cCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCceeee
Q 014125 303 YKLYR-SSEHTNQRILFDIEPSGRHLGTGG-QDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPV 380 (430)
Q Consensus 303 ~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~v 380 (430)
..... ...+........+...+...++.. .++.|.+|+..... ...|...+....++|++..+++++.+...++
T Consensus 244 ~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~----~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~l 319 (432)
T d1qksa2 244 IEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEG----HPDNAWKILDSFPALGGGSLFIKTHPNSQYL 319 (432)
T ss_dssp EEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTT----CTTTBTSEEEEEECSCSCCCCEECCTTCSEE
T ss_pred EeccCccccccCcccceecCCCCceecccccCCceEEeccccccc----ccccccEEEEEEEcCCCCeEEEEecCCccce
Confidence 22211 122344445555555555555443 47889999876543 2345566777778887777777777666665
Q ss_pred c------------------CCCccccccCCCcEEEEeecccc
Q 014125 381 D------------------DFEDLHLSGDENCVSVWSFLYAS 404 (430)
Q Consensus 381 w------------------~~~~l~~~~~d~~i~~w~~~~~~ 404 (430)
| |...+++++.|+.+++|++....
T Consensus 320 w~~~~~~~~~~~~~sv~vpDg~~la~~s~d~~~k~w~~~~~~ 361 (432)
T d1qksa2 320 YVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWA 361 (432)
T ss_dssp EEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHH
T ss_pred eecccCCCCCCeeeEEEEEechhhcccccCCceEeccccccc
Confidence 5 56678999999999999986543
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.94 E-value=2.2e-24 Score=194.56 Aligned_cols=284 Identities=11% Similarity=0.054 Sum_probs=185.9
Q ss_pred eeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccC
Q 014125 53 FRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS 132 (430)
Q Consensus 53 ~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 132 (430)
+..+..|. .+..++|||||++|++++.|++|++||+.+++...... ......+...+.+++|
T Consensus 55 ~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~------------i~~~~~~~~~~~s~~~----- 116 (426)
T d1hzua2 55 VKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAE------------IKIGIEARSVESSKFK----- 116 (426)
T ss_dssp EEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEE------------EECCSEEEEEEECCST-----
T ss_pred EEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEE------------EeCCCCCcceEEeeee-----
Confidence 34555554 58999999999999999999999999998774321100 0011122234555555
Q ss_pred ccCCCCceEEE-EeCCCcEEEEeccCCceeeeeeccccc------ccccceEEEEECCCCcEEEEE--cCCeEEEEEcCC
Q 014125 133 ASDPTSCVFAS-TTRDHPIHLWDATTGLLRCTYRAYDAV------DEITAAFSVAFNPTGTKIFAG--YNKSVRVFDVHR 203 (430)
Q Consensus 133 ~~~~~~~~l~~-~~~dg~i~vwd~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~--~d~~i~v~d~~~ 203 (430)
+|||+++++ +..++.+.+||..++........+... ........+.+++++..++.. ..+.+.+++...
T Consensus 117 --spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~ 194 (426)
T d1hzua2 117 --GYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKD 194 (426)
T ss_dssp --TCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSS
T ss_pred --cCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEecc
Confidence 889998755 457899999999999888776654321 112234566777777776633 445666665543
Q ss_pred CCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCce---------------------------
Q 014125 204 PGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME--------------------------- 256 (430)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~--------------------------- 256 (430)
..... ....++...+..+.|+|++..++++...+..+.+++..+++
T Consensus 195 ~~~~~-------~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (426)
T d1hzua2 195 IDNLT-------VTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPV 267 (426)
T ss_dssp SSSCE-------EEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEE
T ss_pred cccee-------eEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCce
Confidence 21110 01123345577888888555445544455555555544332
Q ss_pred ---------------------------eeEEeeccccCeEEEEEccCCCEEEEEe------cCCCeEEEEeCCCCceEEE
Q 014125 257 ---------------------------LLYVLHGQEGGVTHVQFSRDGNYLYTGG------RKDPYILCWDLRKAVQVVY 303 (430)
Q Consensus 257 ---------------------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~------~~d~~i~i~d~~~~~~~~~ 303 (430)
....+.+|...+..++|+|++++|++.. ..+++|++||+.+......
T Consensus 268 ~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~ 347 (426)
T d1hzua2 268 WSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQ 347 (426)
T ss_dssp EEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCE
T ss_pred EEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeE
Confidence 3344556777889999999999999632 2578999999988754432
Q ss_pred Eee-----cccCCccceEEEEEcCCCCEEEEE-----ccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEE
Q 014125 304 KLY-----RSSEHTNQRILFDIEPSGRHLGTG-----GQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMA 369 (430)
Q Consensus 304 ~~~-----~~~~~~~~v~~~~~~~~~~~l~~~-----~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 369 (430)
... ....+...+..++|||||++++.+ +.+|.|+|||..+++....+.++. .++|+|++-
T Consensus 348 ~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~~------~~tp~Gk~~ 417 (426)
T d1hzua2 348 VLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPR------LITPTGKFN 417 (426)
T ss_dssp EECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEECCTT------CCSEEEEEE
T ss_pred EeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEECCCC------ccCCCceEe
Confidence 211 123456679999999999977432 467889999999999888887664 335666553
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.92 E-value=5.7e-24 Score=185.58 Aligned_cols=278 Identities=10% Similarity=0.045 Sum_probs=191.6
Q ss_pred ceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceE-EEEeCCCcEE
Q 014125 73 SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF-ASTTRDHPIH 151 (430)
Q Consensus 73 ~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~ 151 (430)
+||++++.|++|+|||+.+++....+... .++..+.+++| +|||+++ ++++.++.|.
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~---------------~~~~~~~~i~~-------spDg~~l~v~~~~~~~v~ 59 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIA---------------DAGPTPMVPMV-------APGGRIAYATVNKSESLV 59 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECT---------------TCTTCCCCEEE-------CTTSSEEEEEETTTTEEE
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECC---------------CCCCCccEEEE-------CCCCCEEEEEECCCCeEE
Confidence 58999999999999999977543222111 12345667777 8899887 5667899999
Q ss_pred EEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-------------cCCeEEEEEcCCCCCcccccccccCCC
Q 014125 152 LWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-------------YNKSVRVFDVHRPGRDFEKYSTLKGNK 218 (430)
Q Consensus 152 vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-------------~d~~i~v~d~~~~~~~~~~~~~~~~~~ 218 (430)
+||+.+++.+..+..+........+..++|+|+++.++++ .+..+.+||....... ...
T Consensus 60 v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~---- 131 (337)
T d1pbyb_ 60 KIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRR----KAF---- 131 (337)
T ss_dssp EEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEE----EEE----
T ss_pred EEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEE----Eec----
Confidence 9999999998888776554444466789999999988743 2467888888763211 111
Q ss_pred CCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEE------------------
Q 014125 219 EGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYL------------------ 280 (430)
Q Consensus 219 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l------------------ 280 (430)
.....+..++|+| ++.++++++ +.+.+||..+++....+..+.. .....+.|++..+
T Consensus 132 -~~~~~~~~~~~s~-dg~~l~~~~--~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (337)
T d1pbyb_ 132 -EAPRQITMLAWAR-DGSKLYGLG--RDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTAR 206 (337)
T ss_dssp -ECCSSCCCEEECT-TSSCEEEES--SSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEB
T ss_pred -cccCCceEEEEcC-CCCEEEEEc--CCcceeeeecCcEEEEeecCCc-cccceecCCcceeeccccccceeeeeeeeee
Confidence 1223467889999 455666665 4577899999887777654322 1112222222211
Q ss_pred ------EEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccccccc
Q 014125 281 ------YTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAA 354 (430)
Q Consensus 281 ------~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 354 (430)
.... .++.+.+|++.++....... ..+...+..+.++|++.+++.+ ++.|++||+.+++.+..+. +.
T Consensus 207 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~ 279 (337)
T d1pbyb_ 207 KDIDPADPTA-YRTGLLTMDLETGEMAMREV---RIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-LP 279 (337)
T ss_dssp TTSCTTSGGG-EEEEEEEEETTTCCEEEEEE---EECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-CS
T ss_pred eccceeeecc-cCccEEEEEcCCCcEEEEEe---cCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEc-CC
Confidence 1112 34568889988875443332 3466678889999999988766 5789999999999988876 56
Q ss_pred CCeeEEEEcCCCcEEEEeeCCceeeecCCCccccccCCCcEEEEeeccccccccc
Q 014125 355 DTVNGFSFHPFLPMAASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYASMMENA 409 (430)
Q Consensus 355 ~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~~~~~~ 409 (430)
..+.+++|+|+|++|++++. |+.|++||....+.+..+
T Consensus 280 ~~~~~~~~s~dG~~l~v~~~-----------------~~~i~v~D~~t~~~v~~i 317 (337)
T d1pbyb_ 280 HSYYSVNVSTDGSTVWLGGA-----------------LGDLAAYDAETLEKKGQV 317 (337)
T ss_dssp SCCCEEEECTTSCEEEEESB-----------------SSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEECCCCCEEEEEeC-----------------CCcEEEEECCCCcEEEEE
Confidence 78899999999999998875 455666666655555444
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.92 E-value=1.3e-23 Score=183.94 Aligned_cols=290 Identities=11% Similarity=-0.005 Sum_probs=197.7
Q ss_pred EEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceE-EEE
Q 014125 66 IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF-AST 144 (430)
Q Consensus 66 ~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l-~~~ 144 (430)
++|++++++|++++.|++|.+||+.+++... .+.+.++..+.+++| +|||+++ +++
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~----------------t~~~~~~~~p~~l~~-------spDG~~l~v~~ 58 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYK----------------SCVMPDKFGPGTAMM-------APDNRTAYVLN 58 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEE----------------EEECSSCCSSCEEEE-------CTTSSEEEEEE
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEE----------------EEEcCCCCCcceEEE-------CCCCCEEEEEE
Confidence 5789999999999999999999999874432 223334455677787 8899887 455
Q ss_pred eCCCcEEEEeccCCceeeeeecccccc-cccceEEEEECCCCcEEEEE-------------cCCeEEEEEcCCCCCcccc
Q 014125 145 TRDHPIHLWDATTGLLRCTYRAYDAVD-EITAAFSVAFNPTGTKIFAG-------------YNKSVRVFDVHRPGRDFEK 210 (430)
Q Consensus 145 ~~dg~i~vwd~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-------------~d~~i~v~d~~~~~~~~~~ 210 (430)
..++.|.+||+.+++.+..+....... ....+..++|+|||++++++ .+..+.+|+........
T Consensus 59 ~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-- 136 (346)
T d1jmxb_ 59 NHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAK-- 136 (346)
T ss_dssp TTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBC--
T ss_pred CCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeee--
Confidence 678999999999999887776543221 22346689999999988743 25678888876532110
Q ss_pred cccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEec-----
Q 014125 211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGR----- 285 (430)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----- 285 (430)
.+.. ......+..+.+++ ++.+++. ++.+.+|+..+++.+..+..+ .....+.++|++..++....
T Consensus 137 --~~~~--~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (346)
T d1jmxb_ 137 --PVRT--FPMPRQVYLMRAAD-DGSLYVA---GPDIYKMDVKTGKYTVALPLR-NWNRKGYSAPDVLYFWPHQSPRHEF 207 (346)
T ss_dssp --CSEE--EECCSSCCCEEECT-TSCEEEE---SSSEEEECTTTCCEEEEECST-TCCCTTBCCCBCCCCCCCCCTTCEE
T ss_pred --EEEe--eeccCceEEEEecC-CCEEEEe---CCcceEEEccCCCEEEEEecC-CCccceEEeccccEEEEEecCCCce
Confidence 0000 01112344555665 5545544 356889999988888777644 23344555555544332221
Q ss_pred --------------------CCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCC
Q 014125 286 --------------------KDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGK 345 (430)
Q Consensus 286 --------------------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 345 (430)
.++.+.+||+.+........ ..+...+..+.+++++.+++.... +.|.+||+.+++
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~ 283 (346)
T d1jmxb_ 208 SMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEF---ADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRK 283 (346)
T ss_dssp EEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEE---EECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTE
T ss_pred EeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEe---ecccceeEEEEEeCCCCEEEEecC-CeEEEEECCCCc
Confidence 34557777777765443322 346677888999999888887664 579999999999
Q ss_pred eecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCCCccccccCCCcEEEEeecccccccccCC
Q 014125 346 WISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYASMMENADG 411 (430)
Q Consensus 346 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~ 411 (430)
.+..+. +...+.+++|+|||++|++++. |+.|++||....+.+..+..
T Consensus 284 ~~~~~~-~~~~~~~va~s~DG~~l~v~~~-----------------d~~v~v~D~~t~~~i~~i~~ 331 (346)
T d1jmxb_ 284 LIKAAN-LDHTYYCVAFDKKGDKLYLGGT-----------------FNDLAVFNPDTLEKVKNIKL 331 (346)
T ss_dssp EEEEEE-CSSCCCEEEECSSSSCEEEESB-----------------SSEEEEEETTTTEEEEEEEC
T ss_pred EEEEEc-CCCCEEEEEEcCCCCEEEEEeC-----------------CCcEEEEECccCCEEEEEEC
Confidence 888776 4567999999999999999874 56777777777766655543
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.91 E-value=2.2e-21 Score=166.15 Aligned_cols=246 Identities=15% Similarity=0.185 Sum_probs=180.8
Q ss_pred CceeEEEECcCCceE-EEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCc
Q 014125 61 NFLKGIKWSPDGSSF-LTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC 139 (430)
Q Consensus 61 ~~v~~~~~sp~~~~l-~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (430)
+.+..++|+|||++| ++++.++.|++||+.+++.... +.....+..++| ++++.
T Consensus 32 ~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~------------------~~~~~~~~~~~~-------~~~~~ 86 (301)
T d1l0qa2 32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIAT------------------VPAGSSPQGVAV-------SPDGK 86 (301)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEE------------------EECSSSEEEEEE-------CTTSS
T ss_pred CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeee------------------eecccccccccc-------ccccc
Confidence 447899999999987 5677899999999987643221 112234567777 66776
Q ss_pred eE-EEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCCcccccccccC
Q 014125 140 VF-ASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYSTLKG 216 (430)
Q Consensus 140 ~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~~~~~~~~~ 216 (430)
.+ +++..++.+.+|+..+++....+.... .+.++.|+|++..++ ++ .++.+.+|+....... ..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~----~~--- 153 (301)
T d1l0qa2 87 QVYVTNMASSTLSVIDTTSNTVAGTVKTGK------SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVI----NT--- 153 (301)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSS------SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE----EE---
T ss_pred cccccccccceeeecccccceeeeeccccc------cceEEEeecCCCeeeeeeccccceeeeecccccee----ee---
Confidence 55 455667889999999998887776554 567899999999887 44 6788999998763211 11
Q ss_pred CCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEe--cCCCeEEEEe
Q 014125 217 NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGG--RKDPYILCWD 294 (430)
Q Consensus 217 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~d~~i~i~d 294 (430)
..+...+..+.++|++..++++...++.+.+|+....+....+.. ...+..++|++++..+++++ ..++.|++||
T Consensus 154 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D 230 (301)
T d1l0qa2 154 --VSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV-EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMID 230 (301)
T ss_dssp --EECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSEEEEEEECTTSSEEEEEEECSSCCEEEEEE
T ss_pred --cccCCCceEEEeeccccceeeecccccccccccccceeeeecccc-cCCcceeeccccccccccccccceeeeeeeee
Confidence 112234788999996665556566667888888887777766653 45678899999999887665 2346899999
Q ss_pred CCCCceEEEEeecccCCccceEEEEEcCCCCEE-EEEccCCcEEEEEcCCCCeeccccc
Q 014125 295 LRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHL-GTGGQDGLVHIYDLQTGKWISGFQA 352 (430)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~ 352 (430)
+.+.+... .+ .....+..++|+|+|++| ++++.|+.|++||+.+++.+.++..
T Consensus 231 ~~t~~~~~-~~----~~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~v 284 (301)
T d1l0qa2 231 TGTNKITA-RI----PVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAV 284 (301)
T ss_dssp TTTTEEEE-EE----ECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred cCCCeEEE-EE----cCCCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEeC
Confidence 99875432 22 223467899999999986 5777899999999999998887763
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.89 E-value=4.2e-20 Score=163.38 Aligned_cols=299 Identities=12% Similarity=-0.035 Sum_probs=204.2
Q ss_pred cccCCCceeEEEECcCCceEEEe-----cCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccc
Q 014125 56 SSIPNNFLKGIKWSPDGSSFLTS-----SEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH 130 (430)
Q Consensus 56 ~~~h~~~v~~~~~sp~~~~l~s~-----~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 130 (430)
...|..++.+++++|||+.++.. +.++.|.+||..+++....+.. +....++|
T Consensus 16 ~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~-------------------~~~~~~a~--- 73 (373)
T d2madh_ 16 AGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNG-------------------GFLPNPVA--- 73 (373)
T ss_pred cccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeC-------------------CCCccEEE---
Confidence 34678889999999999988764 2346799999888755432211 12224666
Q ss_pred cCccCCCCceEEEEe----------CCCcEEEEeccCCceeeeeeccccccc--ccceEEEEECCCCcEEEE-E--cCCe
Q 014125 131 MSASDPTSCVFASTT----------RDHPIHLWDATTGLLRCTYRAYDAVDE--ITAAFSVAFNPTGTKIFA-G--YNKS 195 (430)
Q Consensus 131 ~~~~~~~~~~l~~~~----------~dg~i~vwd~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~-~--~d~~ 195 (430)
+|||++|++++ .++.|.+||+.+++.+..+..+..... ......+.|+++++.++. . .++.
T Consensus 74 ----SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~ 149 (373)
T d2madh_ 74 ----AHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred ----cCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCc
Confidence 88999998875 457899999999998887766543110 112346788888887663 2 4567
Q ss_pred EEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccc------cCeE
Q 014125 196 VRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE------GGVT 269 (430)
Q Consensus 196 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~------~~i~ 269 (430)
+.+|+...... ..+.....++.++|++...+++.+.|+.+.+|+...++.......+. ....
T Consensus 150 ~~~~~~~~~~~------------~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (373)
T d2madh_ 150 VGLVVQGGSSD------------DQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQ 217 (373)
T ss_pred eEEeeccCCeE------------EEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceee
Confidence 88888765211 12223467889999888888899999999999998887665544221 2234
Q ss_pred EEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeeccc--------CCccceEEEEEcCCCCEE----------EEEc
Q 014125 270 HVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSS--------EHTNQRILFDIEPSGRHL----------GTGG 331 (430)
Q Consensus 270 ~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l----------~~~~ 331 (430)
.+.+++++.++ ..+ .++.+.+|+............... ........++++|++..+ ++..
T Consensus 218 ~~~~~~~~~~~-~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 295 (373)
T d2madh_ 218 PAQANKSGRIV-WPV-YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHA 295 (373)
T ss_pred eEEECCCceEE-Eec-CCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeec
Confidence 55666666554 444 689999999887643222211100 011223345666665544 4455
Q ss_pred cCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEE--EEeeCCceeeecCCCccccccCCCcEEEEeeccccccccc
Q 014125 332 QDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMA--ASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYASMMENA 409 (430)
Q Consensus 332 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l--~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~~~~~~ 409 (430)
.++.+.+||+.+++.+..+. +...+.+++|+|||+.+ ++++ .|+.|++||...++.+..+
T Consensus 296 ~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~-----------------~d~~v~v~D~~tg~~~~~~ 357 (373)
T d2madh_ 296 AAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSA-----------------GTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred CCCeEEEEECCCCcEEEEec-CCCCeeEEEECCCCCEEEEEEeC-----------------CCCeEEEEECCCCCEEEEE
Confidence 66789999999999988776 56678999999999843 3443 6889999999999999988
Q ss_pred CCC
Q 014125 410 DGI 412 (430)
Q Consensus 410 ~~~ 412 (430)
.++
T Consensus 358 ~~~ 360 (373)
T d2madh_ 358 VEL 360 (373)
T ss_pred CCC
Confidence 865
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.88 E-value=5e-20 Score=160.06 Aligned_cols=283 Identities=14% Similarity=0.168 Sum_probs=188.3
Q ss_pred eEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEe-CCCcEEE
Q 014125 74 SFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTT-RDHPIHL 152 (430)
Q Consensus 74 ~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~v 152 (430)
.+++++.|++|++|++..... ........+.+.+..++| +|||++|++++ .|+.|++
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~---------------l~~~~~~~~~~~v~~la~-------spDG~~L~v~~~~d~~i~~ 63 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGA---------------LTLTQVVDVPGQVQPMVV-------SPDKRYLYVGVRPEFRVLA 63 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSC---------------EEEEEEEECSSCCCCEEE-------CTTSSEEEEEETTTTEEEE
T ss_pred EEEECCCCCcEEEEEEcCCCC---------------eEEEEEEcCCCCEeEEEE-------eCCCCEEEEEECCCCeEEE
Confidence 457788999999999975421 122233456678899999 88999886555 5899999
Q ss_pred EeccCCceeeeeecccccccccceEEEEECCCCcEEEEE--cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEE
Q 014125 153 WDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG--YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAF 230 (430)
Q Consensus 153 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 230 (430)
|++...........+.. ....+..++|+|||++|+++ .++.|.+|+......... .....+...+.++.+
T Consensus 64 ~~i~~~~~~~~~~~~~~--~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~------~~~~~~~~~~~~v~~ 135 (333)
T d1ri6a_ 64 YRIAPDDGALTFAAESA--LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGV------VDVVEGLDGCHSANI 135 (333)
T ss_dssp EEECTTTCCEEEEEEEE--CSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEE------EEEECCCTTBCCCEE
T ss_pred EEEeCCCCcEEEeeecc--cCCCceEEEEcCCCCEEeecccCCCceeeeccccccceec------ccccCCCccceEEEe
Confidence 99987654433322211 11256689999999998854 577899998765321111 111233455778899
Q ss_pred cCCCCceEEEecCCCeEEEEEcCCceeeEEe------eccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEE
Q 014125 231 SPTHTGMLAIGSYSQTSAIYREDNMELLYVL------HGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYK 304 (430)
Q Consensus 231 ~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~------~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~ 304 (430)
+|++...+.....+..|.+|+.......... .........++|++++.+++......+...+|+..........
T Consensus 136 s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 215 (333)
T d1ri6a_ 136 SPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIEC 215 (333)
T ss_dssp CTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEE
T ss_pred eecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceee
Confidence 9966655666667788999998765332211 1233456889999999998888756778888887544322111
Q ss_pred ---e---ecccCCccceEEEEEcCCCCEEEE-EccCCcEEEEEcCCCCeeccccc---ccCCeeEEEEcCCCcEEEEeeC
Q 014125 305 ---L---YRSSEHTNQRILFDIEPSGRHLGT-GGQDGLVHIYDLQTGKWISGFQA---AADTVNGFSFHPFLPMAASSSG 374 (430)
Q Consensus 305 ---~---~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~vwd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~~~ 374 (430)
. ............+++++++++++. +..++.+.+|++........+.. ....+.+++|+|+|++|++++.
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~ 295 (333)
T d1ri6a_ 216 VQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQ 295 (333)
T ss_dssp EEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECT
T ss_pred eeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEEC
Confidence 1 111223455677899999987654 45678899999886554433332 3346789999999998887753
Q ss_pred CceeeecCCCccccccCCCcEEEEeecc
Q 014125 375 HRRFPVDDFEDLHLSGDENCVSVWSFLY 402 (430)
Q Consensus 375 d~~~~vw~~~~l~~~~~d~~i~~w~~~~ 402 (430)
.++.|++|++..
T Consensus 296 ----------------~~~~v~v~~id~ 307 (333)
T d1ri6a_ 296 ----------------KSHHISVYEIVG 307 (333)
T ss_dssp ----------------TTCEEEEEEEET
T ss_pred ----------------CCCeEEEEEEEC
Confidence 467888886653
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.87 E-value=2.3e-20 Score=162.32 Aligned_cols=260 Identities=12% Similarity=0.074 Sum_probs=175.4
Q ss_pred CCCceeEEEECcCCceE-EEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCC
Q 014125 59 PNNFLKGIKWSPDGSSF-LTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT 137 (430)
Q Consensus 59 h~~~v~~~~~sp~~~~l-~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 137 (430)
+...+.+++|+|||++| ++++.++.|.+||+.+++.......... ..+...+..++| +|+
T Consensus 32 ~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~------------~~~~~~~~~v~~-------s~d 92 (337)
T d1pbyb_ 32 AGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP------------EERVKSLFGAAL-------SPD 92 (337)
T ss_dssp CTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBT------------TEEEECTTCEEE-------CTT
T ss_pred CCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCC------------cccccceeeEEE-------cCC
Confidence 44568899999999987 5677899999999998765433322110 001123345566 788
Q ss_pred CceEEEEe------------CCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCC
Q 014125 138 SCVFASTT------------RDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPG 205 (430)
Q Consensus 138 ~~~l~~~~------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~ 205 (430)
++.++++. .+..+.+||..+++....+.... .+..++|+|++++++++ ++.+.+||.....
T Consensus 93 g~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~------~~~~~~~s~dg~~l~~~-~~~~~~~d~~~~~ 165 (337)
T d1pbyb_ 93 GKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPR------QITMLAWARDGSKLYGL-GRDLHVMDPEAGT 165 (337)
T ss_dssp SSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCS------SCCCEEECTTSSCEEEE-SSSEEEEETTTTE
T ss_pred CcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccC------CceEEEEcCCCCEEEEE-cCCcceeeeecCc
Confidence 98888776 35678999999998887776543 56789999999999866 3557889887632
Q ss_pred Ccccccc---------cc---cC---CCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeE-EeeccccCeE
Q 014125 206 RDFEKYS---------TL---KG---NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLY-VLHGQEGGVT 269 (430)
Q Consensus 206 ~~~~~~~---------~~---~~---~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~-~~~~~~~~i~ 269 (430)
....... .. .. ....+........... .......+..++.+.+|+..++.... .+..+...+.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (337)
T d1pbyb_ 166 LVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARK-DIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYF 244 (337)
T ss_dssp EEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBT-TSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEE
T ss_pred EEEEeecCCccccceecCCcceeeccccccceeeeeeeeeee-ccceeeecccCccEEEEEcCCCcEEEEEecCCCcceE
Confidence 1110000 00 00 0000001111111122 12233344556779999998887544 3445667888
Q ss_pred EEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecc
Q 014125 270 HVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISG 349 (430)
Q Consensus 270 ~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 349 (430)
.++++|++.+++.. ++.|++||+.+..... .. .+...+.+++|+|+|++|++++.||.|+|||+.+++.+.+
T Consensus 245 ~~~~~~~~~~~~~~---~~~i~v~d~~~~~~~~-~~----~~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~ 316 (337)
T d1pbyb_ 245 STAVNPAKTRAFGA---YNVLESFDLEKNASIK-RV----PLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQ 316 (337)
T ss_dssp EEEECTTSSEEEEE---ESEEEEEETTTTEEEE-EE----ECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEE
T ss_pred EEEecccceEEEEc---cccEEEEECCCCcEEE-EE----cCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEE
Confidence 99999999987654 5799999999885443 22 2345678999999999999999999999999999999888
Q ss_pred cccc
Q 014125 350 FQAA 353 (430)
Q Consensus 350 ~~~~ 353 (430)
++..
T Consensus 317 i~~~ 320 (337)
T d1pbyb_ 317 VDLP 320 (337)
T ss_dssp EECG
T ss_pred EECC
Confidence 7643
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=8.5e-19 Score=152.15 Aligned_cols=263 Identities=12% Similarity=0.159 Sum_probs=174.7
Q ss_pred ccCCCceeEEEECcCCceEEE-ecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccC
Q 014125 57 SIPNNFLKGIKWSPDGSSFLT-SSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASD 135 (430)
Q Consensus 57 ~~h~~~v~~~~~sp~~~~l~s-~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 135 (430)
..|.+.|.+|+|||||++|++ +..|+.|++|++........ ..........+..++| +
T Consensus 33 ~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~--------------~~~~~~~~~~p~~l~~-------s 91 (333)
T d1ri6a_ 33 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALT--------------FAAESALPGSLTHIST-------D 91 (333)
T ss_dssp EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE--------------EEEEEECSSCCSEEEE-------C
T ss_pred EcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEE--------------EeeecccCCCceEEEE-------c
Confidence 367788999999999999855 45589999999875432111 1111223334556677 8
Q ss_pred CCCceEEEEeC-CCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE--cCCeEEEEEcCCCCCcccccc
Q 014125 136 PTSCVFASTTR-DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG--YNKSVRVFDVHRPGRDFEKYS 212 (430)
Q Consensus 136 ~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~d~~i~v~d~~~~~~~~~~~~ 212 (430)
|||++|++++. ++.+.+|+............... ...+.++.++|++++++.+ .+..|.+|+............
T Consensus 92 pDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 168 (333)
T d1ri6a_ 92 HQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG---LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDP 168 (333)
T ss_dssp TTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC---CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEE
T ss_pred CCCCEEeecccCCCceeeeccccccceecccccCC---CccceEEEeeecceeeeccccccceeeEEEeccCCcceeeec
Confidence 89999998875 66899999887765544433222 2256788999999988844 567899999876443222111
Q ss_pred cccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCce----eeEEee------ccccCeEEEEEccCCCEEEE
Q 014125 213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME----LLYVLH------GQEGGVTHVQFSRDGNYLYT 282 (430)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~----~~~~~~------~~~~~i~~~~~~~~~~~l~~ 282 (430)
... ..........++|++++...+.+....+...+++..... ...... ........++++++++++++
T Consensus 169 ~~~--~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~ 246 (333)
T d1ri6a_ 169 AEV--TTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYA 246 (333)
T ss_dssp EEE--ECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEE
T ss_pred eee--eeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceee
Confidence 111 122334568899999666666666777888888765432 111111 12245677899999999888
Q ss_pred EecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEc-cCCcEEEEEc--CCCCe
Q 014125 283 GGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGG-QDGLVHIYDL--QTGKW 346 (430)
Q Consensus 283 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~--~~~~~ 346 (430)
....++.+.+|++........... .......+..++|+|||++|++++ .++.|.+|++ .+|++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l 312 (333)
T d1ri6a_ 247 CDRTASLITVFSVSEDGSVLSKEG-FQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLL 312 (333)
T ss_dssp EETTTTEEEEEEECTTSCCEEEEE-EEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred ecccCCeEEEEEEcCCCCEEEEEE-EeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcE
Confidence 876788999999876644332221 123345567899999999877765 4688999954 56654
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.85 E-value=6e-20 Score=161.12 Aligned_cols=300 Identities=10% Similarity=0.001 Sum_probs=188.1
Q ss_pred eeEEEECcCCceEEEec-----CCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCC
Q 014125 63 LKGIKWSPDGSSFLTSS-----EDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT 137 (430)
Q Consensus 63 v~~~~~sp~~~~l~s~~-----~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 137 (430)
+.-.+.+|||+.++... .++.|.+||..+++....+.. +....++| +||
T Consensus 4 ~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~-------------------g~~~~~a~-------SpD 57 (355)
T d2bbkh_ 4 RILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDG-------------------GFLPNPVV-------ADD 57 (355)
T ss_dssp CBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEE-------------------CSSCEEEE-------CTT
T ss_pred cEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEEC-------------------CCCCceEE-------cCC
Confidence 44446689999887653 456799999988754322111 22335677 889
Q ss_pred CceEEEE----------eCCCcEEEEeccCCceeeeeecccccc--cccceEEEEECCCCcEEEEE---cCCeEEEEEcC
Q 014125 138 SCVFAST----------TRDHPIHLWDATTGLLRCTYRAYDAVD--EITAAFSVAFNPTGTKIFAG---YNKSVRVFDVH 202 (430)
Q Consensus 138 ~~~l~~~----------~~dg~i~vwd~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~---~d~~i~v~d~~ 202 (430)
|++|++. ..++.|++||+.+++.+..+..+.... .......++|+|++++++.. .+..+.+|+..
T Consensus 58 g~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~ 137 (355)
T d2bbkh_ 58 GSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLE 137 (355)
T ss_dssp SSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETT
T ss_pred CCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecC
Confidence 9988865 347899999999999888776543321 11234578999999988743 46789999987
Q ss_pred CCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEE
Q 014125 203 RPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYT 282 (430)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 282 (430)
..... ...................+.+++++..+++....++.+.+++...... .+...+....+.+++..++.
T Consensus 138 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 211 (355)
T d2bbkh_ 138 GKAFK-RMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP-----EDEFLINHPAYSQKAGRLVW 211 (355)
T ss_dssp TTEEE-EEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSC-----TTSCBCSCCEEETTTTEEEE
T ss_pred CCcEe-eEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccc-----eecceeeeccccCCCCeEEE
Confidence 63211 1000000000000112233445554443333334444444444333221 23334556678888888888
Q ss_pred EecCCCeEEEEeCCCCceEEEEeeccc--------CCccceEEEEEcCCCCEEEEEccC----------CcEEEEEcCCC
Q 014125 283 GGRKDPYILCWDLRKAVQVVYKLYRSS--------EHTNQRILFDIEPSGRHLGTGGQD----------GLVHIYDLQTG 344 (430)
Q Consensus 283 ~~~~d~~i~i~d~~~~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~d----------g~i~vwd~~~~ 344 (430)
++ .++.+++|++..+........... ........+++++++..++....+ +.|.+||+.++
T Consensus 212 ~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~ 290 (355)
T d2bbkh_ 212 PT-YTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG 290 (355)
T ss_dssp EB-TTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTC
T ss_pred ec-CCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCC
Confidence 88 899999999987654322111100 011223358889999887766543 36999999999
Q ss_pred CeecccccccCCeeEEEEcCCCcE-EEEeeCCceeeecCCCccccccCCCcEEEEeecccccccccCCC
Q 014125 345 KWISGFQAAADTVNGFSFHPFLPM-AASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYASMMENADGI 412 (430)
Q Consensus 345 ~~~~~~~~~~~~v~~~~~~~~~~~-l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~ 412 (430)
+.+..+.. ...+.+++|+|+|+. |++++ +.|+.|++||...++.+..+.++
T Consensus 291 ~~~~~~~~-~~~~~~~a~spDG~~~l~v~~----------------~~d~~i~v~D~~tg~~~~~i~~~ 342 (355)
T d2bbkh_ 291 ERLAKFEM-GHEIDSINVSQDEKPLLYALS----------------TGDKTLYIHDAESGEELRSVNQL 342 (355)
T ss_dssp CEEEEEEE-EEEECEEEECCSSSCEEEEEE----------------TTTTEEEEEETTTCCEEEEECCC
T ss_pred cEEEEecC-CCCEEEEEEcCCCCeEEEEEE----------------CCCCEEEEEECCCCCEEEEEeCc
Confidence 99888763 456899999999983 33332 35789999999999988887654
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.83 E-value=8.2e-18 Score=148.42 Aligned_cols=266 Identities=11% Similarity=0.042 Sum_probs=174.8
Q ss_pred eEEEECcCCceEEEec----------CCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCc
Q 014125 64 KGIKWSPDGSSFLTSS----------EDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (430)
Q Consensus 64 ~~~~~sp~~~~l~s~~----------~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (430)
..++|||||++|++++ .++.|.+||..+++........ ......+...|....
T Consensus 69 ~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~-----------------~~~~~~~~~~~~~~~ 131 (373)
T d2madh_ 69 PNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELP-----------------DAPRFDVGPYSWMNA 131 (373)
T ss_pred ccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecC-----------------CcceeEeccCCCcEE
Confidence 3799999999999875 4578999999987654332221 223333444444445
Q ss_pred cCCCCceEEEEe--CCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE--EEcCCeEEEEEcCCCCCccc
Q 014125 134 SDPTSCVFASTT--RDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF--AGYNKSVRVFDVHRPGRDFE 209 (430)
Q Consensus 134 ~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~~~d~~i~v~d~~~~~~~~~ 209 (430)
++++++.++... .++.+.+|+....+...... ...++.++|+++.++ .+.|+.+.+|+.........
T Consensus 132 ~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~ 202 (373)
T d2madh_ 132 NTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLS---------SPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAG 202 (373)
T ss_pred EEeCCCcEEEEEEcCCCceEEeeccCCeEEEEec---------cceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEE
Confidence 577888766554 45678999988776554443 345788999997665 34899999999876432211
Q ss_pred ccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEE--eecc----------ccCeEEEEEccCC
Q 014125 210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYV--LHGQ----------EGGVTHVQFSRDG 277 (430)
Q Consensus 210 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~--~~~~----------~~~i~~~~~~~~~ 277 (430)
.... ............+.+.+ ...++..+.++.+.+|+..+...... ...+ ......+++++++
T Consensus 203 ~~~~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 278 (373)
T d2madh_ 203 LVGA--MLTAAQNLLTQPAQANK--SGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSS 278 (373)
T ss_pred Eeee--ccccCccceeeeEEECC--CceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCC
Confidence 1100 01111222233444544 34566677889999999887643221 1111 1233456666666
Q ss_pred CEEEE----------EecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCE--EEEEccCCcEEEEEcCCCC
Q 014125 278 NYLYT----------GGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRH--LGTGGQDGLVHIYDLQTGK 345 (430)
Q Consensus 278 ~~l~~----------~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~dg~i~vwd~~~~~ 345 (430)
..++. .. .++.+.+||..++.... .+ .+...+..++|+|||+. +++++.|+.|+|||+.+++
T Consensus 279 ~~~~~~~~~~~~~~~~~-~~~~v~~~d~~t~~~~~-~~----~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~ 352 (373)
T d2madh_ 279 DGIYLLTSEQSAWKLHA-AAKEVTSVTGLVGQTSS-QI----SLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGD 352 (373)
T ss_pred CeEEEecCCCceEEeec-CCCeEEEEECCCCcEEE-Ee----cCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCC
Confidence 65443 33 56789999998885443 22 35567889999999984 4688999999999999999
Q ss_pred eecccccccCCeeEEEEcCC
Q 014125 346 WISGFQAAADTVNGFSFHPF 365 (430)
Q Consensus 346 ~~~~~~~~~~~v~~~~~~~~ 365 (430)
.+..+..+....+.+++.++
T Consensus 353 ~~~~~~~~g~~P~~l~~~~~ 372 (373)
T d2madh_ 353 QDQSTVELGSGPQVLSVMNE 372 (373)
T ss_pred EEEEECCCCCCCcEEEEecC
Confidence 99999988877788877653
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.83 E-value=6.8e-19 Score=153.52 Aligned_cols=268 Identities=11% Similarity=0.003 Sum_probs=170.2
Q ss_pred cCCCceeEEEECcCCceE-EEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCC
Q 014125 58 IPNNFLKGIKWSPDGSSF-LTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP 136 (430)
Q Consensus 58 ~h~~~v~~~~~sp~~~~l-~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 136 (430)
.|...+.+++|+|||+++ ++++.++.|++||+.+++......... ........|....++|
T Consensus 37 ~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~------------------~~~~~~~~~~~v~~s~ 98 (346)
T d1jmxb_ 37 PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSS------------------VPGEVGRSMYSFAISP 98 (346)
T ss_dssp SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCC------------------STTEEEECSSCEEECT
T ss_pred CCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccc------------------cccccCCceEEEEEec
Confidence 456678899999999987 566688999999998875432221111 1111112233333488
Q ss_pred CCceEEEEe------------CCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCC
Q 014125 137 TSCVFASTT------------RDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRP 204 (430)
Q Consensus 137 ~~~~l~~~~------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~ 204 (430)
||+++++++ .++.+.+|+..+++....+..+... ..+..+.+++++.+++.+ +.+.+|++.+.
T Consensus 99 DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 173 (346)
T d1jmxb_ 99 DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP---RQVYLMRAADDGSLYVAG--PDIYKMDVKTG 173 (346)
T ss_dssp TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC---SSCCCEEECTTSCEEEES--SSEEEECTTTC
T ss_pred CCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeecc---CceEEEEecCCCEEEEeC--CcceEEEccCC
Confidence 999888775 4677899998887765544433221 145567778888766653 56888887653
Q ss_pred CCcccccc---------cccC----CCCCCCcceE---EEEEcCCCCceEEEecCCCeEEEEEcCCceeeE-EeeccccC
Q 014125 205 GRDFEKYS---------TLKG----NKEGQAGIMS---AIAFSPTHTGMLAIGSYSQTSAIYREDNMELLY-VLHGQEGG 267 (430)
Q Consensus 205 ~~~~~~~~---------~~~~----~~~~~~~~v~---~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~-~~~~~~~~ 267 (430)
........ .... ........+. .....+.....++++..++.+.+||..++.... ....+...
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (346)
T d1jmxb_ 174 KYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTEL 253 (346)
T ss_dssp CEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSC
T ss_pred CEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccce
Confidence 22110000 0000 0000011111 111122234445556667788999998876544 34567778
Q ss_pred eEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCee
Q 014125 268 VTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWI 347 (430)
Q Consensus 268 i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 347 (430)
+..+.+++++.+++... ++.|.+||..+.+... .. .+...+.+++|+|||++|++++.||.|+|||+.+++.+
T Consensus 254 ~~~~~~~~~~~~~~~~~--~~~v~v~d~~~~~~~~-~~----~~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i 326 (346)
T d1jmxb_ 254 YFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIK-AA----NLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKV 326 (346)
T ss_dssp EEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEE-EE----ECSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEE
T ss_pred eEEEEEeCCCCEEEEec--CCeEEEEECCCCcEEE-EE----cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEE
Confidence 89999999998888765 5789999999875432 22 23346889999999999999999999999999999999
Q ss_pred cccccccC
Q 014125 348 SGFQAAAD 355 (430)
Q Consensus 348 ~~~~~~~~ 355 (430)
..++.+.+
T Consensus 327 ~~i~~p~g 334 (346)
T d1jmxb_ 327 KNIKLPGG 334 (346)
T ss_dssp EEEECSSS
T ss_pred EEEECCCC
Confidence 88875544
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.83 E-value=1.6e-18 Score=151.97 Aligned_cols=267 Identities=12% Similarity=0.121 Sum_probs=173.3
Q ss_pred ceeEEEECcCCceEEEec----------CCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecccc
Q 014125 62 FLKGIKWSPDGSSFLTSS----------EDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (430)
Q Consensus 62 ~v~~~~~sp~~~~l~s~~----------~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (430)
.+..++|||||++|++++ .|+.|++||+.+++......... .....+...|..
T Consensus 48 ~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~-----------------~~~~~~~~~~~~ 110 (355)
T d2bbkh_ 48 FLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPD-----------------APRFLVGTYPWM 110 (355)
T ss_dssp SSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETT-----------------CCCCCBSCCGGG
T ss_pred CCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCC-----------------cceeecCCCCce
Confidence 344799999999888653 47899999999876543322211 111111222333
Q ss_pred CccCCCCceEEEEe--CCCcEEEEeccCCceeeeeecccccc--cccceEEEEECCCCcEEEEE--cCCeEEEEEcCCCC
Q 014125 132 SASDPTSCVFASTT--RDHPIHLWDATTGLLRCTYRAYDAVD--EITAAFSVAFNPTGTKIFAG--YNKSVRVFDVHRPG 205 (430)
Q Consensus 132 ~~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~--~d~~i~v~d~~~~~ 205 (430)
..++++++.++.++ .+..+.+|+..+++....+....... .......+.++++++.++.. .++.+.+++.....
T Consensus 111 ~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~ 190 (355)
T d2bbkh_ 111 TSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH 190 (355)
T ss_dssp EEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCS
T ss_pred EEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEeccccc
Confidence 33488999887765 45679999999998887776543211 01123356667777666643 44555555544321
Q ss_pred CcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeE--Eeecc----------ccCeEEEEE
Q 014125 206 RDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLY--VLHGQ----------EGGVTHVQF 273 (430)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~--~~~~~----------~~~i~~~~~ 273 (430)
..+...+....+.+ ....++.++.++.+++|++..++... ....+ ......+++
T Consensus 191 -------------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 256 (355)
T d2bbkh_ 191 -------------PEDEFLINHPAYSQ-KAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAY 256 (355)
T ss_dssp -------------CTTSCBCSCCEEET-TTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEE
T ss_pred -------------ceecceeeeccccC-CCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEE
Confidence 12222344456666 55577888999999999998765421 11111 123456889
Q ss_pred ccCCCEEEEEecCC----------CeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCC--EEEEEccCCcEEEEEc
Q 014125 274 SRDGNYLYTGGRKD----------PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGR--HLGTGGQDGLVHIYDL 341 (430)
Q Consensus 274 ~~~~~~l~~~~~~d----------~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~vwd~ 341 (430)
++++..++... .+ ..|.+||..+.+... .+ .....+.+++|+|||+ ++++++.|+.|+|||+
T Consensus 257 ~~d~~~~~~~~-~~~~~~~~~~~~~~v~v~d~~t~~~~~-~~----~~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~ 330 (355)
T d2bbkh_ 257 HRALDRIYLLV-DQRDEWRHKTASRFVVVLDAKTGERLA-KF----EMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDA 330 (355)
T ss_dssp ETTTTEEEEEE-EECCTTCTTSCEEEEEEEETTTCCEEE-EE----EEEEEECEEEECCSSSCEEEEEETTTTEEEEEET
T ss_pred eCCCCeEEEEe-ccCCceeecCCCCeEEEEeCCCCcEEE-Ee----cCCCCEEEEEEcCCCCeEEEEEECCCCEEEEEEC
Confidence 99999888765 33 479999999875443 22 1335578899999997 4567788999999999
Q ss_pred CCCCeecccccccCCeeEEEEcCC
Q 014125 342 QTGKWISGFQAAADTVNGFSFHPF 365 (430)
Q Consensus 342 ~~~~~~~~~~~~~~~v~~~~~~~~ 365 (430)
.+++.+.++..+......+.+.++
T Consensus 331 ~tg~~~~~i~~~G~~p~~i~~~d~ 354 (355)
T d2bbkh_ 331 ESGEELRSVNQLGHGPQVITTADM 354 (355)
T ss_dssp TTCCEEEEECCCCSSCCEEECCCC
T ss_pred CCCCEEEEEeCcCCCccEEEeCCC
Confidence 999999999877666666665543
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.67 E-value=8.6e-16 Score=135.01 Aligned_cols=297 Identities=8% Similarity=-0.087 Sum_probs=182.5
Q ss_pred cCCCceeEEEECcCCceE--E-EecCCCe--EEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccC
Q 014125 58 IPNNFLKGIKWSPDGSSF--L-TSSEDKT--LRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS 132 (430)
Q Consensus 58 ~h~~~v~~~~~sp~~~~l--~-s~~~dg~--v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 132 (430)
.+.++...++..++++.. + +...+|. +.+||..+++.... ...+. ...++|
T Consensus 17 ~~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~----------------~~~~~---~~~~a~----- 72 (368)
T d1mdah_ 17 ASDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGH----------------SLGAF---LSLAVA----- 72 (368)
T ss_dssp CCCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEE----------------EEECT---TCEEEE-----
T ss_pred ccCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEE----------------EeCCC---CCcceE-----
Confidence 345556666677887743 2 2344555 66667776543211 11111 123556
Q ss_pred ccCCCCceEEEEe----------CCCcEEEEeccCCceeeeeecccccc--cccceEEEEECCCCcEEEEE--cCCeEEE
Q 014125 133 ASDPTSCVFASTT----------RDHPIHLWDATTGLLRCTYRAYDAVD--EITAAFSVAFNPTGTKIFAG--YNKSVRV 198 (430)
Q Consensus 133 ~~~~~~~~l~~~~----------~dg~i~vwd~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~--~d~~i~v 198 (430)
+|||+.|++.+ .|+.|.+||..+++.+..+..+.... .......++|+|||++++.+ .++.+.+
T Consensus 73 --spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~ 150 (368)
T d1mdah_ 73 --GHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAG 150 (368)
T ss_dssp --CTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEE
T ss_pred --CCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEE
Confidence 88999888764 47789999999999888876543211 11133478999999998854 5799999
Q ss_pred EEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEE------eeccccCeEEEE
Q 014125 199 FDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYV------LHGQEGGVTHVQ 272 (430)
Q Consensus 199 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~------~~~~~~~i~~~~ 272 (430)
||+....... .. ..+.. ..+.|.+...++..+.||++.++++........ +..+...+....
T Consensus 151 ~d~~~~~~~~----~~----~~~~~----~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (368)
T d1mdah_ 151 LSVPGASDDQ----LT----KSASC----FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQ 218 (368)
T ss_dssp EEETTTEEEE----EE----ECSSC----CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEE
T ss_pred EECCCCcEeE----Ee----eccCc----ceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecc
Confidence 9997742111 11 11110 112233455677778888888888765533221 123344556777
Q ss_pred EccCCCEEEEEecCCCeEEEEeCCCCceEEEEeeccc--------CCccceEEEEEcCCCCEEEEEccC---------Cc
Q 014125 273 FSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSS--------EHTNQRILFDIEPSGRHLGTGGQD---------GL 335 (430)
Q Consensus 273 ~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~d---------g~ 335 (430)
+.+++..+.. ..+.+.++++.............. ........++++|++..++....+ ..
T Consensus 219 ~~~~g~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~ 295 (368)
T d1mdah_ 219 ANYPGMLVWA---VASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAEN 295 (368)
T ss_dssp ETTTTEEEEC---BSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEE
T ss_pred cccCcEEEEe---cCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCce
Confidence 8888765544 345667777665433322111100 011122347889988876655332 35
Q ss_pred EEEEEcCCCCeecccccccCCeeEEEEcCCCcE-EEEeeCCceeeecCCCccccccCCCcEEEEeecccccccccCCC
Q 014125 336 VHIYDLQTGKWISGFQAAADTVNGFSFHPFLPM-AASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYASMMENADGI 412 (430)
Q Consensus 336 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~ 412 (430)
|.+||..+++.+..+. +...+.+++|+|||+. |+.++ ..|+.|++||...++.+..+...
T Consensus 296 v~v~D~~t~~~~~~~~-~~~~~~~~a~spDG~~~ly~s~----------------~~~~~v~v~D~~tgk~~~~i~~g 356 (368)
T d1mdah_ 296 TSSVTASVGQTSGPIS-NGHDSDAIIAAQDGASDNYANS----------------AGTEVLDIYDAASDQDQSSVELD 356 (368)
T ss_dssp EEEEESSSCCEEECCE-EEEEECEEEECCSSSCEEEEEE----------------TTTTEEEEEESSSCEEEEECCCC
T ss_pred EEEEECCCCcEeEEec-CCCceeEEEECCCCCEEEEEEe----------------CCCCeEEEEECCCCCEEEEEECC
Confidence 9999999999988887 4457899999999973 43332 25788999999999888777643
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.66 E-value=3.9e-15 Score=130.69 Aligned_cols=264 Identities=9% Similarity=-0.046 Sum_probs=158.8
Q ss_pred eEEEECcCCceEEEec----------CCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCc
Q 014125 64 KGIKWSPDGSSFLTSS----------EDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (430)
Q Consensus 64 ~~~~~sp~~~~l~s~~----------~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (430)
..++|+|||+.|++++ .|+.|++||..+++....+..+.. .....+.....++|
T Consensus 68 ~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~----------~~~~~g~~p~~~a~------ 131 (368)
T d1mdah_ 68 SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDA----------PRFSVGPRVHIIGN------ 131 (368)
T ss_dssp CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTS----------CSCCBSCCTTSEEE------
T ss_pred CcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCcc----------ceecccCCccceEE------
Confidence 3589999999988754 477899999998765433322110 00001112233455
Q ss_pred cCCCCceEEEEe-CCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccc
Q 014125 134 SDPTSCVFASTT-RDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYS 212 (430)
Q Consensus 134 ~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~ 212 (430)
+|||++|+++. .++.+.+||+.+++....+..+... .+...+...+++.+.||.+.++++.........
T Consensus 132 -SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~-------~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~-- 201 (368)
T d1mdah_ 132 -CASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCF-------HIHPGAAATHYLGSCPASLAASDLAAAPAAAGI-- 201 (368)
T ss_dssp -CTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCC-------CCEEEETTEEECCCCTTSCEEEECCSSCCCCEE--
T ss_pred -CCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcc-------eEccCCCceEEEEcCCCCEEEEEecCCceeeee--
Confidence 88999998876 5799999999999988877654321 011111222223446777777776654332211
Q ss_pred cccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEee--c----------cccCeEEEEEccCCCEE
Q 014125 213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH--G----------QEGGVTHVQFSRDGNYL 280 (430)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~--~----------~~~~i~~~~~~~~~~~l 280 (430)
........+...+....+.+ .+..+. ...+.+++++........... . .......++++|++..+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~-~g~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~ 278 (368)
T d1mdah_ 202 VGAQCTGAQNCSSQAAQANY-PGMLVW--AVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGI 278 (368)
T ss_dssp CCCCSCTTSCBCSCCEEETT-TTEEEE--CBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEE
T ss_pred eecccccccccceeeccccc-CcEEEE--ecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEE
Confidence 11112223334455566666 333333 335667777766554332211 1 11223468889999887
Q ss_pred EEEecCC--------CeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCE--EEEEccCCcEEEEEcCCCCeeccc
Q 014125 281 YTGGRKD--------PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRH--LGTGGQDGLVHIYDLQTGKWISGF 350 (430)
Q Consensus 281 ~~~~~~d--------~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~dg~i~vwd~~~~~~~~~~ 350 (430)
++....+ ..|.+||..+++... .+ .....+..++|+|||+. ++++..|+.|++||..+++.+..+
T Consensus 279 ~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~-~~----~~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i 353 (368)
T d1mdah_ 279 MILTVEHSRSCLAAAENTSSVTASVGQTSG-PI----SNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSV 353 (368)
T ss_dssp EEEEEECSSCTTSCEEEEEEEESSSCCEEE-CC----EEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEEC
T ss_pred EEEecCCCceeecCCceEEEEECCCCcEeE-Ee----cCCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEE
Confidence 7664122 358999999885432 22 23456788999999973 467778899999999999999888
Q ss_pred ccccCCeeEEEE
Q 014125 351 QAAADTVNGFSF 362 (430)
Q Consensus 351 ~~~~~~v~~~~~ 362 (430)
..... ...|++
T Consensus 354 ~~g~~-P~~l~~ 364 (368)
T d1mdah_ 354 ELDKG-PESLSV 364 (368)
T ss_dssp CCCSC-CCEEEC
T ss_pred ECCCC-CCEEEE
Confidence 75433 344444
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.63 E-value=1.2e-14 Score=126.70 Aligned_cols=279 Identities=9% Similarity=-0.005 Sum_probs=168.2
Q ss_pred EEEecCCCeEEEEeCCCCCCcccccccccccc-cCccc------------ceeeecCCCeeeeeeeccccCccCCCCceE
Q 014125 75 FLTSSEDKTLRIFSLPENGISYDVNACSLAKD-QDSYE------------ASLVVTEGESVYDFCWFPHMSASDPTSCVF 141 (430)
Q Consensus 75 l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~-~~~~~------------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 141 (430)
++|++.+|.|++|++.+++....+.....-.. .-... ......|........ .+|||++|
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~-------gtpDGr~l 86 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTD-------GRYDGKYL 86 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEET-------TEEEEEEE
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceec-------ccCCCCEE
Confidence 66888999999999998876655433111000 00000 000001111122222 26789888
Q ss_pred EEE-eCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCc--EEEEEcCCeE------------------EEEE
Q 014125 142 AST-TRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGT--KIFAGYNKSV------------------RVFD 200 (430)
Q Consensus 142 ~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~d~~i------------------~v~d 200 (430)
++. ..++.|.++|+.+++....+..... ..+..++|+|+++ ++++..+..+ ..+|
T Consensus 87 fV~d~~~~rVavIDl~t~k~~~ii~iP~g----~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD 162 (441)
T d1qnia2 87 FINDKANTRVARIRLDIMKTDKITHIPNV----QAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAID 162 (441)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEECTTC----CCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEE
T ss_pred EEEcCCCCEEEEEECCCCcEeeEEecCCC----CCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeec
Confidence 655 5678999999999988877664322 2678899999998 4444444333 3355
Q ss_pred cCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecC-------------------------------------
Q 014125 201 VHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY------------------------------------- 243 (430)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~------------------------------------- 243 (430)
..+..... ++. -......+.++|++...++++..
T Consensus 163 ~~t~~v~~----qI~-----v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~ 233 (441)
T d1qnia2 163 AETMDVAW----QVI-----VDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKT 233 (441)
T ss_dssp TTTCSEEE----EEE-----ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBC
T ss_pred CccceeeE----EEe-----cCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEE
Confidence 44321110 000 01235678888855433333322
Q ss_pred ---CCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEE-------EEeecccCCcc
Q 014125 244 ---SQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVV-------YKLYRSSEHTN 313 (430)
Q Consensus 244 ---dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~-------~~~~~~~~~~~ 313 (430)
++.+.+++....+.+..+.... ....+.++|||+++++++..+++|.+||+.+..... ..+.......-
T Consensus 234 v~~~~v~vvd~~~~~~v~~~IPvgk-sPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~gl 312 (441)
T d1qnia2 234 IGDSKVPVVDGRGESEFTRYIPVPK-NPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGL 312 (441)
T ss_dssp CTTCCCCEEECSSSCSSEEEECCBS-SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCS
T ss_pred eCCCCcEEEEcccCCceEEEEeCCC-CccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeeccccc
Confidence 2334444444444555555443 357899999999999888799999999986422100 00000011222
Q ss_pred ceEEEEEcCCCCEEEEEccCCcEEEEEcCC----------CCeeccc-----ccccCCeeEEEEcCCCcEEEEeeC
Q 014125 314 QRILFDIEPSGRHLGTGGQDGLVHIYDLQT----------GKWISGF-----QAAADTVNGFSFHPFLPMAASSSG 374 (430)
Q Consensus 314 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~----------~~~~~~~-----~~~~~~v~~~~~~~~~~~l~s~~~ 374 (430)
.....+|+++|..+.+...|..|..|++.. ...+..+ .+|...+.+..++|+|++|++++.
T Consensus 313 gplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k 388 (441)
T d1qnia2 313 GPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSK 388 (441)
T ss_dssp CEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEES
T ss_pred CcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecCc
Confidence 345578999999899999999999999741 1122222 578888888999999999999954
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.60 E-value=3.3e-13 Score=122.38 Aligned_cols=121 Identities=14% Similarity=0.105 Sum_probs=83.9
Q ss_pred eecccCCCceeEEEECcCCceEEEecC---------CCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeee
Q 014125 54 RTSSIPNNFLKGIKWSPDGSSFLTSSE---------DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYD 124 (430)
Q Consensus 54 ~~~~~h~~~v~~~~~sp~~~~l~s~~~---------dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 124 (430)
..+..|...|.++.|||||++||.++. ++.+.|||+.+++.. ....+...+..
T Consensus 55 ~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~------------------~l~~~~~~~~~ 116 (470)
T d2bgra1 55 STFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI------------------TEERIPNNTQW 116 (470)
T ss_dssp TTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC------------------CSSCCCTTEEE
T ss_pred hhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCccc------------------ccccCCccccc
Confidence 356778889999999999999998753 567899999876432 12223457888
Q ss_pred eeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeeccccc-------------ccccceEEEEECCCCcEEEE-
Q 014125 125 FCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAV-------------DEITAAFSVAFNPTGTKIFA- 190 (430)
Q Consensus 125 ~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-------------~~~~~v~~~~~~~~~~~l~~- 190 (430)
+.| ||||+.+|.. .++.+.+|+..+++..+........ ........+.|+|||+.|+.
T Consensus 117 ~~~-------SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~ 188 (470)
T d2bgra1 117 VTW-------SPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYA 188 (470)
T ss_dssp EEE-------CSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEE
T ss_pred ccc-------ccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCcccee
Confidence 888 8899999986 5677999999988765543322110 01123456889999999994
Q ss_pred E-cCCeEEEEE
Q 014125 191 G-YNKSVRVFD 200 (430)
Q Consensus 191 ~-~d~~i~v~d 200 (430)
. .+..+..|.
T Consensus 189 ~~d~~~v~~~~ 199 (470)
T d2bgra1 189 QFNDTEVPLIE 199 (470)
T ss_dssp EEECTTCCEEE
T ss_pred EecCCcCceEE
Confidence 3 334344443
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.48 E-value=6.8e-11 Score=102.67 Aligned_cols=257 Identities=12% Similarity=0.046 Sum_probs=149.4
Q ss_pred CeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE--EE--cCCe
Q 014125 120 ESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF--AG--YNKS 195 (430)
Q Consensus 120 ~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~~--~d~~ 195 (430)
..+..|++ +++++.|+++.. +.+..|.+.............. ......+.++++++.+. +. ..+.
T Consensus 40 ~~~s~la~-------s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~---~~~p~~v~~~~~~~~~~v~~a~~~~~~ 108 (365)
T d1jofa_ 40 EPISWMTF-------DHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPI---GGHPRANDADTNTRAIFLLAAKQPPYA 108 (365)
T ss_dssp CCCSEEEE-------CTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEEC---CSSGGGGCTTSCCEEEEEEECSSTTCC
T ss_pred CCCCEEEE-------cCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecC---CCCcEEEEECCCCCEEEEEEecCCCCE
Confidence 34555666 788999988765 4577777764332222211111 01344677888887443 22 3456
Q ss_pred EEEEEcCCCCCcccccc---------cccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceee---EEee-
Q 014125 196 VRVFDVHRPGRDFEKYS---------TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELL---YVLH- 262 (430)
Q Consensus 196 i~v~d~~~~~~~~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~---~~~~- 262 (430)
|..+.+...+....... ............+.++.|+|++..++++......|.+|+......+ ....
T Consensus 109 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~ 188 (365)
T d1jofa_ 109 VYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDA 188 (365)
T ss_dssp EEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEEC
T ss_pred EEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceee
Confidence 66555433221111000 0000001122347899999966656666566678999876543221 1111
Q ss_pred -ccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEe-ec--------------ccCCccceEEEEEcCCCCE
Q 014125 263 -GQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKL-YR--------------SSEHTNQRILFDIEPSGRH 326 (430)
Q Consensus 263 -~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~-~~--------------~~~~~~~v~~~~~~~~~~~ 326 (430)
........++|+|+++++++....+++|.+|++.......... .. ..........+.++|+|++
T Consensus 189 ~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~ 268 (365)
T d1jofa_ 189 PDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKY 268 (365)
T ss_dssp SSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSE
T ss_pred cCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCE
Confidence 2345688999999999999888788999999987654221111 00 0112234567899999999
Q ss_pred EEEEcc------CCcEEEEEcCCCCeeccc------ccccCCeeEEEEcC-CCcEEEEeeCCceeeecCCCccccccCCC
Q 014125 327 LGTGGQ------DGLVHIYDLQTGKWISGF------QAAADTVNGFSFHP-FLPMAASSSGHRRFPVDDFEDLHLSGDEN 393 (430)
Q Consensus 327 l~~~~~------dg~i~vwd~~~~~~~~~~------~~~~~~v~~~~~~~-~~~~l~s~~~d~~~~vw~~~~l~~~~~d~ 393 (430)
|+++.. .+.|..|++.....+... ........+++++| +|++|+.+.. .++
T Consensus 269 lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~----------------~s~ 332 (365)
T d1jofa_ 269 MFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDD----------------QEG 332 (365)
T ss_dssp EEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECS----------------SSC
T ss_pred EEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeC----------------CCC
Confidence 887743 223777777643322211 11233567899998 7898877753 467
Q ss_pred cEEEEeeccc
Q 014125 394 CVSVWSFLYA 403 (430)
Q Consensus 394 ~i~~w~~~~~ 403 (430)
.|.+|++...
T Consensus 333 ~v~v~~~~~~ 342 (365)
T d1jofa_ 333 WLEIYRWKDE 342 (365)
T ss_dssp EEEEEEEETT
T ss_pred eEEEEEEeCC
Confidence 7777776544
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.47 E-value=5.2e-14 Score=122.68 Aligned_cols=229 Identities=7% Similarity=0.007 Sum_probs=149.2
Q ss_pred eEEEEeCCCcEEEEeccCCceeeeeecccccc-------------------------cccceEEEEECCCCcEEEEE--c
Q 014125 140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVD-------------------------EITAAFSVAFNPTGTKIFAG--Y 192 (430)
Q Consensus 140 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~-------------------------~~~~v~~~~~~~~~~~l~~~--~ 192 (430)
.+++++.+|+|++|++.+++.+..+....... |.........+|||++|++. .
T Consensus 13 ~f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~ 92 (441)
T d1qnia2 13 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKA 92 (441)
T ss_dssp EEEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETT
T ss_pred EEEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCC
Confidence 37788899999999999999888765532100 11223344457899999754 7
Q ss_pred CCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCe------------------EEEEEcCC
Q 014125 193 NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQT------------------SAIYREDN 254 (430)
Q Consensus 193 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~------------------v~~~d~~~ 254 (430)
++.|.++|+++.... ..+ .......+..++|+|++...++++..+.. +..+|..+
T Consensus 93 ~~rVavIDl~t~k~~----~ii---~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t 165 (441)
T d1qnia2 93 NTRVARIRLDIMKTD----KIT---HIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAET 165 (441)
T ss_dssp TTEEEEEETTTTEEE----EEE---ECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTT
T ss_pred CCEEEEEECCCCcEe----eEE---ecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCcc
Confidence 889999999863211 111 12234568899999966655555443333 34578887
Q ss_pred ceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCC
Q 014125 255 MELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDG 334 (430)
Q Consensus 255 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 334 (430)
.+....+.. .+....+.|+|+|+++++++.....+..++..+....-... ..+....+.++|+|+++..+ .++
T Consensus 166 ~~v~~qI~v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~-----v~n~p~~~~~~~dGk~~~v~-~~~ 238 (441)
T d1qnia2 166 MDVAWQVIV-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVV-----VFNVERIAAAVKAGNFKTIG-DSK 238 (441)
T ss_dssp CSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEE-----EEEHHHHHHHHHTTCCBCCT-TCC
T ss_pred ceeeEEEec-CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEE-----eCCccceEEEecCCCEEEeC-CCC
Confidence 777766653 35678999999999999888333344444433322111000 00111224567899987664 467
Q ss_pred cEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEE-eeCCceeeecCC
Q 014125 335 LVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAAS-SSGHRRFPVDDF 383 (430)
Q Consensus 335 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s-~~~d~~~~vw~~ 383 (430)
.+.+++....+.+..+..+.. ...+.++|||+++++ +..++++.|||.
T Consensus 239 v~vvd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~ 287 (441)
T d1qnia2 239 VPVVDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAI 287 (441)
T ss_dssp CCEEECSSSCSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEG
T ss_pred cEEEEcccCCceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEe
Confidence 788888887777777776554 578999999997755 566899999964
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.47 E-value=5.1e-11 Score=103.47 Aligned_cols=261 Identities=13% Similarity=0.136 Sum_probs=149.5
Q ss_pred cCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCC
Q 014125 58 IPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT 137 (430)
Q Consensus 58 ~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 137 (430)
.....+.-|+|+|+++.|.++.. +.+..|.+...... ........+. .|....++++
T Consensus 37 ~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~---------------~~~~~~~~~~-------~p~~v~~~~~ 93 (365)
T d1jofa_ 37 PQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEI---------------VHEASHPIGG-------HPRANDADTN 93 (365)
T ss_dssp CTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEE---------------EEEEEEECCS-------SGGGGCTTSC
T ss_pred cCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCe---------------EEEeeecCCC-------CcEEEEECCC
Confidence 34445677999999999988765 46777776532100 0000001111 2333444777
Q ss_pred CceEEE--Ee-CCCcEEEEeccC-Cceeeeeecc-----------cccccccceEEEEECCCCcEEEEE--cCCeEEEEE
Q 014125 138 SCVFAS--TT-RDHPIHLWDATT-GLLRCTYRAY-----------DAVDEITAAFSVAFNPTGTKIFAG--YNKSVRVFD 200 (430)
Q Consensus 138 ~~~l~~--~~-~dg~i~vwd~~~-~~~~~~~~~~-----------~~~~~~~~v~~~~~~~~~~~l~~~--~d~~i~v~d 200 (430)
++.++. +. ..+.|..+.+.. +.....+... ........+.++.|+|+|+++++. ....|.+|+
T Consensus 94 ~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~ 173 (365)
T d1jofa_ 94 TRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHR 173 (365)
T ss_dssp CEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEE
Confidence 774332 22 235555554322 1111111100 000111246799999999988855 456788888
Q ss_pred cCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeE--Eee----------------
Q 014125 201 VHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLY--VLH---------------- 262 (430)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~--~~~---------------- 262 (430)
....+..... ..... .......+.++|+|++..++++...+++|.+|+....+... ...
T Consensus 174 ~~~~g~~~~~-~~~~~--~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (365)
T d1jofa_ 174 KLASGEVELV-GSVDA--PDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPET 250 (365)
T ss_dssp ECTTSCEEEE-EEEEC--SSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTT
T ss_pred ccCCCceeec-cceee--cCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeecccccccccccccc
Confidence 7654332111 11111 12234689999999776666777789999999987654221 111
Q ss_pred -ccccCeEEEEEccCCCEEEEEecCCC-----eEEEEeCCCCceEEEEe--ecccCCccceEEEEEcC-CCCEEEEEc-c
Q 014125 263 -GQEGGVTHVQFSRDGNYLYTGGRKDP-----YILCWDLRKAVQVVYKL--YRSSEHTNQRILFDIEP-SGRHLGTGG-Q 332 (430)
Q Consensus 263 -~~~~~i~~~~~~~~~~~l~~~~~~d~-----~i~i~d~~~~~~~~~~~--~~~~~~~~~v~~~~~~~-~~~~l~~~~-~ 332 (430)
.+......+.++|+|++|+++.+.+. .|..|++.......... ............++++| +|++|+++. .
T Consensus 251 ~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~ 330 (365)
T d1jofa_ 251 GKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQ 330 (365)
T ss_dssp SSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSS
T ss_pred ccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCC
Confidence 01123567899999999998864333 38888876543332211 11122334566799998 789876664 6
Q ss_pred CCcEEEEEcCCC
Q 014125 333 DGLVHIYDLQTG 344 (430)
Q Consensus 333 dg~i~vwd~~~~ 344 (430)
++.|.+|+++..
T Consensus 331 s~~v~v~~~~~~ 342 (365)
T d1jofa_ 331 EGWLEIYRWKDE 342 (365)
T ss_dssp SCEEEEEEEETT
T ss_pred CCeEEEEEEeCC
Confidence 688999987654
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.39 E-value=1.1e-09 Score=90.61 Aligned_cols=222 Identities=11% Similarity=0.088 Sum_probs=135.0
Q ss_pred CCCeeeeeeeccccCccCCCCceEEEEeCCC---cEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-E-c
Q 014125 118 EGESVYDFCWFPHMSASDPTSCVFASTTRDH---PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-G-Y 192 (430)
Q Consensus 118 ~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~-~ 192 (430)
....+...+| ||||+.||...... .+.+.+...+........ .. ......|+|+|+.++. . .
T Consensus 37 ~~~~~~sP~w-------SPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~spdg~~i~~~~~~ 103 (269)
T d2hqsa1 37 SPQPLMSPAW-------SPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF-PR-----HNGAPAFSPDGSKLAFALSK 103 (269)
T ss_dssp ESSCEEEEEE-------CTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECC-SS-----CEEEEEECTTSSEEEEEECT
T ss_pred CCCceeeeEE-------CCCCCEEEEEEeeccCcceeeeecccCceeEEeee-ec-----ccccceecCCCCeeeEeeec
Confidence 3456778888 88999998765443 366666666654433332 22 6678899999999884 3 3
Q ss_pred CCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCe--EEEEEcCCceeeEEeeccccCeEE
Q 014125 193 NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQT--SAIYREDNMELLYVLHGQEGGVTH 270 (430)
Q Consensus 193 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--v~~~d~~~~~~~~~~~~~~~~i~~ 270 (430)
++...++.......... .............+++++...+++...++. |.+.++..+... .+.........
T Consensus 104 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~-~~~~~~~~~~~ 175 (269)
T d2hqsa1 104 TGSLNLYVMDLASGQIR-------QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQD 175 (269)
T ss_dssp TSSCEEEEEETTTCCEE-------ECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCSSSEEEE
T ss_pred CCccceeecccccccce-------eeeeccccccccccccccccceecccccCCceEeeeecccccce-eeecccccccc
Confidence 44433333322111110 011222334455677756666666666664 555566555433 33345567788
Q ss_pred EEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEcc---CCcEEEEEcCCCCee
Q 014125 271 VQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQ---DGLVHIYDLQTGKWI 347 (430)
Q Consensus 271 ~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~vwd~~~~~~~ 347 (430)
..|+|+++.++..+...+...+|............ ..........|+|||++|+..+. ...|++++++.+..
T Consensus 176 ~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~- 250 (269)
T d2hqsa1 176 ADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVL----SSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK- 250 (269)
T ss_dssp EEECTTSSEEEEEEECSSCEEEEEEETTTCCEEEC----CCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE-
T ss_pred cccccccceeEEEeecCCceeeeEeecccccceEe----ecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCE-
Confidence 89999999998887455555554443332222222 23345567899999999875554 34689999987665
Q ss_pred cccccccCCeeEEEEcCC
Q 014125 348 SGFQAAADTVNGFSFHPF 365 (430)
Q Consensus 348 ~~~~~~~~~v~~~~~~~~ 365 (430)
..+....+.+...+|+|-
T Consensus 251 ~~lt~~~g~~~~p~WSP~ 268 (269)
T d2hqsa1 251 ARLPATDGQVKFPAWSPY 268 (269)
T ss_dssp EECCCSSSEEEEEEECCC
T ss_pred EEEeCCCCcEEeEEeCCC
Confidence 445556677888999983
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.39 E-value=5.4e-11 Score=107.50 Aligned_cols=114 Identities=14% Similarity=0.195 Sum_probs=84.0
Q ss_pred EEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEE
Q 014125 65 GIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFAST 144 (430)
Q Consensus 65 ~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 144 (430)
.+.|.++++++.. .|+.+.+||+.+++....+... ....+...|.++.| ||||++|+.+
T Consensus 21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~------------~~~~~~~~i~~~~~-------SpDg~~i~~~ 79 (470)
T d2bgra1 21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENS------------TFDEFGHSINDYSI-------SPDGQFILLE 79 (470)
T ss_dssp CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTT------------TTTTSSSCCCEEEE-------CTTSSEEEEE
T ss_pred CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchh------------hhhhccCccceeEE-------CCCCCEEEEE
Confidence 5789999988775 4678999999987643211111 11223457888888 8899999987
Q ss_pred eC---------CCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCC
Q 014125 145 TR---------DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPG 205 (430)
Q Consensus 145 ~~---------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~ 205 (430)
+. ++.+.+||+.+++... +..+.. .+..+.|+|||+.|+...++.+.+|+...+.
T Consensus 80 ~~~~~~~r~s~~~~~~l~d~~~~~~~~-l~~~~~-----~~~~~~~SPDG~~ia~~~~~~l~~~~~~~g~ 143 (470)
T d2bgra1 80 YNYVKQWRHSYTASYDIYDLNKRQLIT-EERIPN-----NTQWVTWSPVGHKLAYVWNNDIYVKIEPNLP 143 (470)
T ss_dssp EEEEECSSSCEEEEEEEEETTTTEECC-SSCCCT-----TEEEEEECSSTTCEEEEETTEEEEESSTTSC
T ss_pred ECCcceeeeccCceEEEEECCCCcccc-cccCCc-----cccccccccCcceeeEeecccceEEECCCCc
Confidence 53 5778999999887543 333332 7889999999999998889999999987643
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.37 E-value=4e-10 Score=95.08 Aligned_cols=237 Identities=11% Similarity=0.068 Sum_probs=151.0
Q ss_pred ceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceE
Q 014125 62 FLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF 141 (430)
Q Consensus 62 ~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 141 (430)
.+..++++|||+++++...+++|..|+..... .........+.+++| +++|+++
T Consensus 29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~-------------------~~~~~~~~~~~gla~-------~~dG~l~ 82 (302)
T d2p4oa1 29 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQ-------------------QIHATVEGKVSGLAF-------TSNGDLV 82 (302)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTCCE-------------------EEEEECSSEEEEEEE-------CTTSCEE
T ss_pred CcCCEEECCCCCEEEEeCCCCEEEEEeCCCCE-------------------EEEEcCCCCcceEEE-------cCCCCeE
Confidence 58899999999999999999999888765321 122233456778888 7899999
Q ss_pred EEEeCCCcEEEEeccCCceee-eeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCccccccc--ccCC
Q 014125 142 ASTTRDHPIHLWDATTGLLRC-TYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYST--LKGN 217 (430)
Q Consensus 142 ~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~--~~~~ 217 (430)
++...++.+..|+........ .+.... .......+++.+++.++++. .++.+..++............. ....
T Consensus 83 v~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 159 (302)
T d2p4oa1 83 ATGWNADSIPVVSLVKSDGTVETLLTLP---DAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSN 159 (302)
T ss_dssp EEEECTTSCEEEEEECTTSCEEEEEECT---TCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSS
T ss_pred EEecCCceEEEEEecccccceeeccccC---CccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceee
Confidence 998888888888875543211 111111 11257789999999888765 6777877777653211110000 0111
Q ss_pred CCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEE--eeccccCeEEEEEccCCCEEEEEecCCCeEEEEeC
Q 014125 218 KEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYV--LHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDL 295 (430)
Q Consensus 218 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~ 295 (430)
..........+.+. +..++++.+..+.|..++......... ..........++++++|.+.++.. .++.|..++.
T Consensus 160 ~~~~~~~~ngi~~~--~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~-~~~~V~~i~p 236 (302)
T d2p4oa1 160 SESVFPAANGLKRF--GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATH-IYNSVVRIAP 236 (302)
T ss_dssp TTCCSCSEEEEEEE--TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECB-TTCCEEEECT
T ss_pred ccCccccccccccc--CCceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEc-CCCcEEEECC
Confidence 11222345566665 456788888899999998775432211 111234567899999998766666 7899999987
Q ss_pred CCCceEEEEeecccCCccceEEEEE---cCCCCEEEEEccC
Q 014125 296 RKAVQVVYKLYRSSEHTNQRILFDI---EPSGRHLGTGGQD 333 (430)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~l~~~~~d 333 (430)
....... ..........++++| ++|++.|+.++..
T Consensus 237 ~G~~~~~---~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 237 DRSTTII---AQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG 274 (302)
T ss_dssp TCCEEEE---ECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred CCCEEEE---EecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence 6542222 221233456789999 6777877665543
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.33 E-value=1.5e-09 Score=89.29 Aligned_cols=236 Identities=8% Similarity=0.033 Sum_probs=144.9
Q ss_pred eeEEEECcCCceEEE-ecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceE
Q 014125 63 LKGIKWSPDGSSFLT-SSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF 141 (430)
Q Consensus 63 v~~~~~sp~~~~l~s-~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 141 (430)
-.+|+++++|+..++ .+..+.+..++....... ............+++ ++++.++
T Consensus 16 P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~-----------------~~~~~~~~~p~gvav-------~~~g~i~ 71 (260)
T d1rwia_ 16 PSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT-----------------VLPFNGLYQPQGLAV-------DGAGTVY 71 (260)
T ss_dssp EEEEEECTTCCEEEEECSSSCEEEEEC----CEE-----------------ECCCCSCCSCCCEEE-------CTTCCEE
T ss_pred CCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEE-----------------EeccCCccCceEEEE-------cCCCCEE
Confidence 478999999996555 455677777766533110 000011112233444 7788888
Q ss_pred EEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccccccccCCCCC
Q 014125 142 ASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEG 220 (430)
Q Consensus 142 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~ 220 (430)
++....+.+++++-.+.......... ..+.++++.+++.++++. .+..+..++........ .. ..
T Consensus 72 v~d~~~~~i~~~~~~~~~~~~~~~~~------~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~---~~-----~~ 137 (260)
T d1rwia_ 72 VTDFNNRVVTLAAGSNNQTVLPFDGL------NYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV---LP-----FT 137 (260)
T ss_dssp EEETTTEEEEECTTCSCCEECCCCSC------CSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEE---CC-----CC
T ss_pred Eeeeeeceeeeeeeccceeeeeeeee------eecccccccccceeEeeccccccccccccccceeee---ee-----ec
Confidence 77777777776665554433322211 256789999999887765 55667776654421111 00 11
Q ss_pred CCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCce
Q 014125 221 QAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQ 300 (430)
Q Consensus 221 ~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~ 300 (430)
.......++++| .++++++...++.|..++...................|+++++|+++++.. ..+.|..++......
T Consensus 138 ~~~~p~~i~~~~-~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~-~~~~i~~~~~~~~~~ 215 (260)
T d1rwia_ 138 GLNDPDGVAVDN-SGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEH-NTNQVVKLLAGSTTS 215 (260)
T ss_dssp SCCSCCEEEECT-TCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEET-TTTEEEEECTTCSCC
T ss_pred ccCCcceeeecC-CCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeec-CCCEEEEEeCCCCeE
Confidence 122356889999 566888888889999999876544333333445678999999998665555 788888888765432
Q ss_pred EEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcC
Q 014125 301 VVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQ 342 (430)
Q Consensus 301 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 342 (430)
.. . . ...-.....++++++|.++++-..+++|+.++..
T Consensus 216 ~~--~-~-~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~~ 253 (260)
T d1rwia_ 216 TV--L-P-FTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSL 253 (260)
T ss_dssp EE--C-C-CCSCCCEEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred EE--E-c-cCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeCC
Confidence 21 1 1 2223456789999999888877777777765543
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.32 E-value=1.1e-09 Score=90.06 Aligned_cols=222 Identities=9% Similarity=0.004 Sum_probs=136.0
Q ss_pred CCCCceEEEEe-CCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCe-EEEEEcCCCCCcccccc
Q 014125 135 DPTSCVFASTT-RDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKS-VRVFDVHRPGRDFEKYS 212 (430)
Q Consensus 135 ~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~-i~v~d~~~~~~~~~~~~ 212 (430)
+++|+++++.. ..+.+..++........... .. ......+++++++.++++...+. +++++-.. .... .
T Consensus 22 d~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~--~~---~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~-~~~~---~ 92 (260)
T d1rwia_ 22 DSAGNVYVTSEGMYGRVVKLATGSTGTTVLPF--NG---LYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSN-NQTV---L 92 (260)
T ss_dssp CTTCCEEEEECSSSCEEEEEC----CEEECCC--CS---CCSCCCEEECTTCCEEEEETTTEEEEECTTCS-CCEE---C
T ss_pred cCCCCEEEEEcCCCCEEEEEcCCCceEEEecc--CC---ccCceEEEEcCCCCEEEeeeeeceeeeeeecc-ceee---e
Confidence 77888776654 45667776655433222111 11 11456889999999887775544 44433222 1110 0
Q ss_pred cccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEE
Q 014125 213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILC 292 (430)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i 292 (430)
. .........+++.+ .++++++-..+..+..++...................++++|+++.+++.. .++.|..
T Consensus 93 ~-----~~~~~~p~~iavd~-~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~-~~~~i~~ 165 (260)
T d1rwia_ 93 P-----FDGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDT-DNNRVVK 165 (260)
T ss_dssp C-----CCSCCSEEEEEECT-TCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEG-GGTEEEE
T ss_pred e-----eeeeeecccccccc-cceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeecc-ccccccc
Confidence 0 11123468899999 556777777777788887655433222222234567899999998766666 7889999
Q ss_pred EeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEe
Q 014125 293 WDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASS 372 (430)
Q Consensus 293 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 372 (430)
+|.......... .........++++++|.++++....+.|..++.............-....+|+++++|.++++-
T Consensus 166 ~d~~~~~~~~~~----~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad 241 (260)
T d1rwia_ 166 LEAESNNQVVLP----FTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVAD 241 (260)
T ss_dssp ECTTTCCEEECC----CSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEE
T ss_pred cccccceeeeee----ccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEE
Confidence 998765433211 2334556889999999988888888889988876443222212223456899999999877775
Q ss_pred eCCc
Q 014125 373 SGHR 376 (430)
Q Consensus 373 ~~d~ 376 (430)
..++
T Consensus 242 ~~~~ 245 (260)
T d1rwia_ 242 RGND 245 (260)
T ss_dssp GGGT
T ss_pred CCCC
Confidence 5433
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.29 E-value=3.8e-09 Score=88.92 Aligned_cols=231 Identities=13% Similarity=0.057 Sum_probs=150.1
Q ss_pred CeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEE
Q 014125 120 ESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRV 198 (430)
Q Consensus 120 ~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v 198 (430)
..+..+++ +|||+++++...+++|..|+... +... +..... .+.+++|+++|++++++ .++.+..
T Consensus 28 ~~~e~iAv-------~pdG~l~vt~~~~~~I~~i~p~g-~~~~-~~~~~~-----~~~gla~~~dG~l~v~~~~~~~~~~ 93 (302)
T d2p4oa1 28 TFLENLAS-------APDGTIFVTNHEVGEIVSITPDG-NQQI-HATVEG-----KVSGLAFTSNGDLVATGWNADSIPV 93 (302)
T ss_dssp CCEEEEEE-------CTTSCEEEEETTTTEEEEECTTC-CEEE-EEECSS-----EEEEEEECTTSCEEEEEECTTSCEE
T ss_pred CCcCCEEE-------CCCCCEEEEeCCCCEEEEEeCCC-CEEE-EEcCCC-----CcceEEEcCCCCeEEEecCCceEEE
Confidence 34666676 88999999999999999888654 3322 222222 78899999999988876 6777888
Q ss_pred EEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeec--------c--ccCe
Q 014125 199 FDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG--------Q--EGGV 268 (430)
Q Consensus 199 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~--------~--~~~i 268 (430)
++............. .........+++.+ +++++++.+.++.+..++...+........ + ....
T Consensus 94 ~~~~~~~~~~~~~~~-----~~~~~~~n~i~~~~-~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (302)
T d2p4oa1 94 VSLVKSDGTVETLLT-----LPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAA 167 (302)
T ss_dssp EEEECTTSCEEEEEE-----CTTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSE
T ss_pred EEecccccceeeccc-----cCCccccceeEEcc-CCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccc
Confidence 877553322211111 12234578899999 677888888899999999887654322211 1 1234
Q ss_pred EEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCC-ee
Q 014125 269 THVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGK-WI 347 (430)
Q Consensus 269 ~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~ 347 (430)
..+.+ ++..++.+....+.|..++............ .........++++++|++.++...++.|..++..... .+
T Consensus 168 ngi~~--~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~ 243 (302)
T d2p4oa1 168 NGLKR--FGNFLYVSNTEKMLLLRIPVDSTDKPGEPEI--FVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTII 243 (302)
T ss_dssp EEEEE--ETTEEEEEETTTTEEEEEEBCTTSCBCCCEE--EEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEE
T ss_pred ccccc--cCCceeeecCCCCeEEecccccccccccccc--ccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEE
Confidence 55555 4556666665889999998776432211100 0112234569999999988888888999999876332 23
Q ss_pred cccccccCCeeEEEE---cCCCcEEEEeeC
Q 014125 348 SGFQAAADTVNGFSF---HPFLPMAASSSG 374 (430)
Q Consensus 348 ~~~~~~~~~v~~~~~---~~~~~~l~s~~~ 374 (430)
......-...++++| .+|++.|..++.
T Consensus 244 ~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~ 273 (302)
T d2p4oa1 244 AQAEQGVIGSTAVAFGQTEGDCTAIYVVTN 273 (302)
T ss_dssp ECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred EecCCCCCCceEEEEcCCCCCCCEEEEECC
Confidence 333334456889999 678887766554
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.28 E-value=1.9e-08 Score=85.17 Aligned_cols=235 Identities=10% Similarity=0.038 Sum_probs=149.2
Q ss_pred eeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEc---CCeEE
Q 014125 121 SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGY---NKSVR 197 (430)
Q Consensus 121 ~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---d~~i~ 197 (430)
.+..++| .++|+++++-...+.|..|+..++.....+..... ....++++++|+++++.. .....
T Consensus 41 ~lEG~~~-------D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~-----~p~gla~~~dG~l~va~~~~~~~~~~ 108 (319)
T d2dg1a1 41 QLEGLNF-------DRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKA-----NPAAIKIHKDGRLFVCYLGDFKSTGG 108 (319)
T ss_dssp CEEEEEE-------CTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSS-----SEEEEEECTTSCEEEEECTTSSSCCE
T ss_pred CcEeCEE-------CCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCC-----CeeEEEECCCCCEEEEecCCCcccee
Confidence 3456777 77898888877889999999887765554433332 567899999999888752 23344
Q ss_pred EEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecC------CCeEEEEEcCCceeeEEeeccccCeEEE
Q 014125 198 VFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY------SQTSAIYREDNMELLYVLHGQEGGVTHV 271 (430)
Q Consensus 198 v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~------dg~v~~~d~~~~~~~~~~~~~~~~i~~~ 271 (430)
++.+............ . .........+++.+ +++++++... .+.+..++.... .+..+...-...+.+
T Consensus 109 i~~~~~~~~~~~~~~~---~-~~~~~~~nd~~~d~-~G~l~vtd~~~~~~~~~g~v~~~~~dg~-~~~~~~~~~~~pnGi 182 (319)
T d2dg1a1 109 IFAATENGDNLQDIIE---D-LSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFR-TVTPIIQNISVANGI 182 (319)
T ss_dssp EEEECTTSCSCEEEEC---S-SSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSC-CEEEEEEEESSEEEE
T ss_pred EEEEcCCCceeeeecc---C-CCcccCCcceeEEe-ccceeecccccccccCcceeEEEecccc-eeEEEeeccceeeee
Confidence 4444332222211111 0 11123477899999 4556655332 234555555433 233332233456789
Q ss_pred EEccCCCEEEEEecCCCeEEEEeCCCCceEEEE----eecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCee
Q 014125 272 QFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYK----LYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWI 347 (430)
Q Consensus 272 ~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 347 (430)
+|+|+++.|+.+....+.|..|++......... ...........-.++++++|++.++....+.|.+||. .|+.+
T Consensus 183 a~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l 261 (319)
T d2dg1a1 183 ALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPI 261 (319)
T ss_dssp EECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEE
T ss_pred eeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEE
Confidence 999999988777767899999998654222111 1111122233567999999998888888899999995 68887
Q ss_pred ccccc------ccCCeeEEEEcCCCcEEEEeeC
Q 014125 348 SGFQA------AADTVNGFSFHPFLPMAASSSG 374 (430)
Q Consensus 348 ~~~~~------~~~~v~~~~~~~~~~~l~s~~~ 374 (430)
..+.. +...+++++|.|.+..+++.+.
T Consensus 262 ~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~ 294 (319)
T d2dg1a1 262 GQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN 294 (319)
T ss_dssp EEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred EEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence 76642 3345789999998876666554
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.27 E-value=6.5e-09 Score=86.37 Aligned_cols=233 Identities=10% Similarity=0.142 Sum_probs=148.5
Q ss_pred CCCCceEEEEeCCCcEEEEeccCCceeeeeeccccc-ccccceEEEEECCCC-cEEEEE--cCCeEEEEEcCCCCCcccc
Q 014125 135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAV-DEITAAFSVAFNPTG-TKIFAG--YNKSVRVFDVHRPGRDFEK 210 (430)
Q Consensus 135 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~-~~l~~~--~d~~i~v~d~~~~~~~~~~ 210 (430)
+++++++++-..+..|++||.+ ++.+..+...... ........+++.++. ..+++. .++.|..++... .....
T Consensus 31 d~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g--~~~~~ 107 (279)
T d1q7fa_ 31 NAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYG--QFVRK 107 (279)
T ss_dssp CTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTS--CEEEE
T ss_pred cCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccccc--cceee
Confidence 7889888887788899999964 6666655332211 111234456655553 444443 455677766532 11111
Q ss_pred cccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEee--ccccCeEEEEEccCCCEEEEEecCCC
Q 014125 211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH--GQEGGVTHVQFSRDGNYLYTGGRKDP 288 (430)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~~d~ 288 (430)
. ..........+++.+ .+.++++....+.+.+++.. ++.+..+. .+......+++.+++..+++.. ..+
T Consensus 108 ---~---~~~~~~~p~~~avd~-~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~-~~~ 178 (279)
T d1q7fa_ 108 ---F---GATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDN-RAH 178 (279)
T ss_dssp ---E---CTTTCSCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEG-GGT
T ss_pred ---c---CCCcccccceecccc-CCcEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeec-ccc
Confidence 1 112234567889988 56677777778889888865 45555542 3455778899999987666666 889
Q ss_pred eEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEcc-CCcEEEEEcCCCCeeccccccc--CCeeEEEEcCC
Q 014125 289 YILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQ-DGLVHIYDLQTGKWISGFQAAA--DTVNGFSFHPF 365 (430)
Q Consensus 289 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~--~~v~~~~~~~~ 365 (430)
.|++||.... ....+ ...+.......++++++|+++++-.. ++.|.+|+. +|+.+..+.... .....|++.|+
T Consensus 179 ~V~~~d~~G~--~~~~~-g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~d 254 (279)
T d1q7fa_ 179 CVKVFNYEGQ--YLRQI-GGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDD 254 (279)
T ss_dssp EEEEEETTCC--EEEEE-SCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETT
T ss_pred ceeeeecCCc--eeeee-cccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeCC
Confidence 9999998653 22222 22344556788999999997776544 457999984 588777664332 35789999999
Q ss_pred CcEEEEeeCCceeeecCCC
Q 014125 366 LPMAASSSGHRRFPVDDFE 384 (430)
Q Consensus 366 ~~~l~s~~~d~~~~vw~~~ 384 (430)
|.++++ +.+..|++|.-.
T Consensus 255 G~l~V~-~~n~~v~~fr~~ 272 (279)
T d1q7fa_ 255 GSVVLA-SKDYRLYIYRYV 272 (279)
T ss_dssp TEEEEE-ETTTEEEEEECS
T ss_pred CcEEEE-eCCCeEEEEEee
Confidence 986654 444444444433
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.23 E-value=5.7e-08 Score=81.81 Aligned_cols=230 Identities=10% Similarity=0.080 Sum_probs=142.2
Q ss_pred CCCCceEEEEeC-------CCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCC
Q 014125 135 DPTSCVFASTTR-------DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGR 206 (430)
Q Consensus 135 ~~~~~~l~~~~~-------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~ 206 (430)
.++|+++++... +|.|..||..++........... ........++|.+++..++ +...+.|..++......
T Consensus 26 d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~-~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~ 104 (314)
T d1pjxa_ 26 DKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVN-GYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFE 104 (314)
T ss_dssp CTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEET-TEECCEEEEEECSSSSEEEEEETTTEEEEEETTSCEE
T ss_pred eCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccc-cCCCcceeEEEeCCCCEEEEEECCCeEEEEeCCCcEE
Confidence 778887776433 46788899888765443322111 1112356899999998666 44566788888754211
Q ss_pred cccccccccCCCCCC-CcceEEEEEcCCCCceEEEecC---------------CCeEEEEEcCCceeeEEeeccccCeEE
Q 014125 207 DFEKYSTLKGNKEGQ-AGIMSAIAFSPTHTGMLAIGSY---------------SQTSAIYREDNMELLYVLHGQEGGVTH 270 (430)
Q Consensus 207 ~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~---------------dg~v~~~d~~~~~~~~~~~~~~~~i~~ 270 (430)
. .......+. -.....+++.+ +++++++-.. .|.|..++.. ++..... ......+.
T Consensus 105 ~-----~~~~~~~g~~~~~pndl~~d~-~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~-~~~~~pNG 176 (314)
T d1pjxa_ 105 E-----IAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-TAFQFPNG 176 (314)
T ss_dssp E-----CCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-EEESSEEE
T ss_pred E-----EEeccccccccCCCcEEEECC-CCCEEEecCccCcccccccceeccCCceEEEEeec-CceeEee-CCcceeee
Confidence 1 011111111 12357789999 4556665321 2445555543 3333222 23344578
Q ss_pred EEEccCCC----EEEEEecCCCeEEEEeCCCCceEEEE--eecc-cCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCC
Q 014125 271 VQFSRDGN----YLYTGGRKDPYILCWDLRKAVQVVYK--LYRS-SEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQT 343 (430)
Q Consensus 271 ~~~~~~~~----~l~~~~~~d~~i~i~d~~~~~~~~~~--~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 343 (430)
++|+|++. .|+++....+.|..||+......... .... .......-.+++.++|++.++....+.|.+||.+.
T Consensus 177 i~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~ 256 (314)
T d1pjxa_ 177 IAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDG 256 (314)
T ss_dssp EEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTC
T ss_pred eEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCC
Confidence 99998875 56666557899999988654333211 1111 12233456799999999888877789999999998
Q ss_pred CCeecccccccCCeeEEEEcCCCcEE-EEee
Q 014125 344 GKWISGFQAAADTVNGFSFHPFLPMA-ASSS 373 (430)
Q Consensus 344 ~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~ 373 (430)
++.+..+..+...+++++|.|+++.| ++.+
T Consensus 257 g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~ 287 (314)
T d1pjxa_ 257 GQPKMRIRCPFEKPSNLHFKPQTKTIFVTEH 287 (314)
T ss_dssp BSCSEEEECSSSCEEEEEECTTSSEEEEEET
T ss_pred CEEEEEEECCCCCEEEEEEeCCCCEEEEEEC
Confidence 88777776666788999999998744 4443
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.23 E-value=3e-08 Score=82.21 Aligned_cols=249 Identities=11% Similarity=0.156 Sum_probs=150.7
Q ss_pred ceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceE
Q 014125 62 FLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF 141 (430)
Q Consensus 62 ~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 141 (430)
.-..|+++|+|+.+++-.....|++||.+. .....+..... .. .....-..+++. ...+..+
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~G-~~~~~~~~~~~---~~--------~~~~~p~~~~~~------~~~~~~~ 85 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKEG-RFKFQFGECGK---RD--------SQLLYPNRVAVV------RNSGDII 85 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTTS-CEEEEECCBSS---ST--------TCBSSEEEEEEE------TTTTEEE
T ss_pred CccEEEEcCCCCEEEEECCCCEEEEEeCCC-CEEEEecccCC---Cc--------cccccccccccc------ccccccc
Confidence 357899999999888877788999999753 22111110000 00 000011122221 1123333
Q ss_pred EE-EeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccccccccCCCC
Q 014125 142 AS-TTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKE 219 (430)
Q Consensus 142 ~~-~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~ 219 (430)
++ .+.++.|.+++. .++....+.... ......+++.+++.++++. ..+.+.+++... .....+. ..
T Consensus 86 ~~~~~~~~~i~~~~~-~g~~~~~~~~~~----~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g--~~~~~~g-----~~ 153 (279)
T d1q7fa_ 86 VTERSPTHQIQIYNQ-YGQFVRKFGATI----LQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG--NVLHKFG-----CS 153 (279)
T ss_dssp EEECGGGCEEEEECT-TSCEEEEECTTT----CSCEEEEEECTTSCEEEEETTTTEEEEECTTS--CEEEEEE-----CT
T ss_pred eeccCCccccccccc-cccceeecCCCc----ccccceeccccCCcEEEEeeccceeeEeccCC--ceeeccc-----cc
Confidence 33 344556777765 455544443221 1256789999999888866 556777777543 1111111 12
Q ss_pred CCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEee--ccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCC
Q 014125 220 GQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH--GQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRK 297 (430)
Q Consensus 220 ~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~ 297 (430)
.+......+++.+ +++++++....+.|++||.. ++.+..+. +.......|+++++|+.+++-...++.|.+|+...
T Consensus 154 ~~~~~~~~i~~d~-~g~i~v~d~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G 231 (279)
T d1q7fa_ 154 KHLEFPNGVVVND-KQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG 231 (279)
T ss_dssp TTCSSEEEEEECS-SSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS
T ss_pred ccccccceeeecc-ceeEEeeeccccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCCC
Confidence 3345678889998 66788888889999999975 55555553 23445789999999986666442355799998643
Q ss_pred CceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCe
Q 014125 298 AVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKW 346 (430)
Q Consensus 298 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 346 (430)
. ....+.. .........+++.|+|.+++ ++.+++|++|......+
T Consensus 232 ~--~~~~~~~-~~~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~~~~~ 276 (279)
T d1q7fa_ 232 Q--LISALES-KVKHAQCFDVALMDDGSVVL-ASKDYRLYIYRYVQLAP 276 (279)
T ss_dssp C--EEEEEEE-SSCCSCEEEEEEETTTEEEE-EETTTEEEEEECSCCCC
T ss_pred C--EEEEEeC-CCCCCCEeEEEEeCCCcEEE-EeCCCeEEEEEeeeecC
Confidence 2 2222221 22334578899999997655 55788999999876544
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.21 E-value=3.5e-08 Score=83.15 Aligned_cols=246 Identities=11% Similarity=0.129 Sum_probs=144.1
Q ss_pred eeEEEECcCCceEEEecC-------CCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccC
Q 014125 63 LKGIKWSPDGSSFLTSSE-------DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASD 135 (430)
Q Consensus 63 v~~~~~sp~~~~l~s~~~-------dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 135 (430)
.-.++|.|+|+++++... +|+|..||..++...... ..........|....++
T Consensus 20 ~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~--------------------~~~~~~~~g~P~Gl~~~ 79 (314)
T d1pjxa_ 20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVIC--------------------KPEVNGYGGIPAGCQCD 79 (314)
T ss_dssp CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEE--------------------CCEETTEECCEEEEEEC
T ss_pred CeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEE--------------------CCccccCCCcceeEEEe
Confidence 566889999998776443 467888888765321000 00000011123333337
Q ss_pred CCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCe--------------EEEEEc
Q 014125 136 PTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKS--------------VRVFDV 201 (430)
Q Consensus 136 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~--------------i~v~d~ 201 (430)
++++.++++...+.|..++...+........... ........+++.++|.+.++...+. =++|.+
T Consensus 80 ~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g-~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~ 158 (314)
T d1pjxa_ 80 RDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEG-RRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCF 158 (314)
T ss_dssp SSSSEEEEEETTTEEEEEETTSCEEECCSBCTTS-CBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEE
T ss_pred CCCCEEEEEECCCeEEEEeCCCcEEEEEeccccc-cccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEE
Confidence 8898888887777788888766543222111111 1112356799999998877642211 133333
Q ss_pred CCCCCcccccccccCCCCCCCcceEEEEEcCCCC----ceEEEecCCCeEEEEEcCCceeeE------Eeec-cccCeEE
Q 014125 202 HRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHT----GMLAIGSYSQTSAIYREDNMELLY------VLHG-QEGGVTH 270 (430)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~l~~~~~dg~v~~~d~~~~~~~~------~~~~-~~~~i~~ 270 (430)
...+...... ......+.++|+|++. .++++-+..+.|..||+.....+. .+.. .......
T Consensus 159 ~~dg~~~~~~--------~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdG 230 (314)
T d1pjxa_ 159 TTDGQMIQVD--------TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADG 230 (314)
T ss_dssp CTTSCEEEEE--------EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEE
T ss_pred eecCceeEee--------CCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEcccccccccee
Confidence 3222111111 0112246788988543 356666778999999876432221 1211 1223568
Q ss_pred EEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCC-EEEEEccCCcEEEEEcC
Q 014125 271 VQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGR-HLGTGGQDGLVHIYDLQ 342 (430)
Q Consensus 271 ~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~ 342 (430)
+++.++|+..++.. ..+.|.+||.+.+.... .+ .......++++|.|+++ +.++.+.+|+|...++.
T Consensus 231 iavD~~GnlyVa~~-~~g~I~~~dp~~g~~~~-~i---~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~ 298 (314)
T d1pjxa_ 231 MDFDEDNNLLVANW-GSSHIEVFGPDGGQPKM-RI---RCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp EEEBTTCCEEEEEE-TTTEEEEECTTCBSCSE-EE---ECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred eEEecCCcEEEEEc-CCCEEEEEeCCCCEEEE-EE---ECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence 99999999776666 78999999987653222 22 22345678899999987 45666778888888875
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.19 E-value=3.3e-08 Score=81.51 Aligned_cols=221 Identities=12% Similarity=0.087 Sum_probs=127.6
Q ss_pred ccCCCceeEEEECcCCceEEEecCCC---eEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCc
Q 014125 57 SIPNNFLKGIKWSPDGSSFLTSSEDK---TLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (430)
Q Consensus 57 ~~h~~~v~~~~~sp~~~~l~s~~~dg---~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (430)
..+...+.+.+|||||+.||...... .+.+.+...+ .......+........|
T Consensus 35 ~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~------ 90 (269)
T d2hqsa1 35 HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG------------------AVRQVASFPRHNGAPAF------ 90 (269)
T ss_dssp EEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC------------------CEEEEECCSSCEEEEEE------
T ss_pred ecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccC------------------ceeEEeeeeccccccee------
Confidence 34566688999999999999765432 3555555433 22234445566777888
Q ss_pred cCCCCceEEEEeC-CCcEEEEeccC--CceeeeeecccccccccceEEEEECCCCcEEE-EE-cCCe--EEEEEcCCCCC
Q 014125 134 SDPTSCVFASTTR-DHPIHLWDATT--GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKS--VRVFDVHRPGR 206 (430)
Q Consensus 134 ~~~~~~~l~~~~~-dg~i~vwd~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~--i~v~d~~~~~~ 206 (430)
+|+|..++.... ++...++.... ........... ......+++++..+. ++ .++. |.+.++.....
T Consensus 91 -spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~ 163 (269)
T d2hqsa1 91 -SPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRS------NNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP 163 (269)
T ss_dssp -CTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSS------CEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC
T ss_pred -cCCCCeeeEeeecCCccceeecccccccceeeeeccc------cccccccccccccceecccccCCceEeeeecccccc
Confidence 778888876554 33333333322 22222111111 334556777777666 43 4554 44445443211
Q ss_pred cccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecC
Q 014125 207 DFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRK 286 (430)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 286 (430)
. .............|+|++..++.+....+...+|.............+........|+|||+.|+..+..
T Consensus 164 --~-------~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPDG~~i~f~s~~ 234 (269)
T d2hqsa1 164 --Q-------RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQ 234 (269)
T ss_dssp --E-------ECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEEE
T ss_pred --e-------eeecccccccccccccccceeEEEeecCCceeeeEeecccccceEeecCccccceEECCCCCEEEEEEcC
Confidence 1 1123345677789999666666666656655555443322222333355667888999999998765522
Q ss_pred --CCeEEEEeCCCCceEEEEeecccCCccceEEEEEcC
Q 014125 287 --DPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEP 322 (430)
Q Consensus 287 --d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 322 (430)
...|+++++...... .+ ......+...+|||
T Consensus 235 ~~~~~l~~~~~dg~~~~--~l---t~~~g~~~~p~WSP 267 (269)
T d2hqsa1 235 GMGSVLNLVSTDGRFKA--RL---PATDGQVKFPAWSP 267 (269)
T ss_dssp TTEEEEEEEETTSCCEE--EC---CCSSSEEEEEEECC
T ss_pred CCCcEEEEEECCCCCEE--EE---eCCCCcEEeEEeCC
Confidence 346888999876432 22 23455677889998
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.03 E-value=1.6e-06 Score=73.05 Aligned_cols=234 Identities=12% Similarity=0.087 Sum_probs=139.0
Q ss_pred ceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceE
Q 014125 62 FLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF 141 (430)
Q Consensus 62 ~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 141 (430)
.+..++|.++|++.++-...+.|..|+.+++... ............+++ +++|+++
T Consensus 41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~-----------------~~~~~~~~~p~gla~-------~~dG~l~ 96 (319)
T d2dg1a1 41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIK-----------------RPFVSHKANPAAIKI-------HKDGRLF 96 (319)
T ss_dssp CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE-----------------EEEECSSSSEEEEEE-------CTTSCEE
T ss_pred CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEE-----------------EEEeCCCCCeeEEEE-------CCCCCEE
Confidence 4578999999998888778899998887654221 111222234556666 7789877
Q ss_pred EEEeCC----CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCC-----eEEEEEcCCCCCcccccc
Q 014125 142 ASTTRD----HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNK-----SVRVFDVHRPGRDFEKYS 212 (430)
Q Consensus 142 ~~~~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~-----~i~v~d~~~~~~~~~~~~ 212 (430)
++...+ +.+...+...+.......... ....+..+++.++|.+.++...+ .-.+|.+...+......
T Consensus 97 va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~- 172 (319)
T d2dg1a1 97 VCYLGDFKSTGGIFAATENGDNLQDIIEDLS---TAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPI- 172 (319)
T ss_dssp EEECTTSSSCCEEEEECTTSCSCEEEECSSS---SCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEE-
T ss_pred EEecCCCccceeEEEEcCCCceeeeeccCCC---cccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEE-
Confidence 765432 335555555554433332211 12256789999999877764321 22233333222211111
Q ss_pred cccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCce-eeEE-------eeccccCeEEEEEccCCCEEEEEe
Q 014125 213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME-LLYV-------LHGQEGGVTHVQFSRDGNYLYTGG 284 (430)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~-~~~~-------~~~~~~~i~~~~~~~~~~~l~~~~ 284 (430)
...-.....++|+|++..++++-+..+.|..|++.... .... ..........+++.++|++.++..
T Consensus 173 ------~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~ 246 (319)
T d2dg1a1 173 ------IQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMY 246 (319)
T ss_dssp ------EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEE
T ss_pred ------eeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEc
Confidence 01112357899999666677777888999999976431 1111 111112356899999998776666
Q ss_pred cCCCeEEEEeCCCCceEEEEeecc---cCCccceEEEEEcCCCCEEEEEcc
Q 014125 285 RKDPYILCWDLRKAVQVVYKLYRS---SEHTNQRILFDIEPSGRHLGTGGQ 332 (430)
Q Consensus 285 ~~d~~i~i~d~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~ 332 (430)
..+.|.+||-. ++.. ..+... ..+...+++++|.|++..+++...
T Consensus 247 -~~g~V~~~~p~-G~~l-~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~ 294 (319)
T d2dg1a1 247 -GQGRVLVFNKR-GYPI-GQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN 294 (319)
T ss_dssp -TTTEEEEECTT-SCEE-EEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred -CCCEEEEECCC-CcEE-EEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence 89999999964 4332 233221 133456789999998776665543
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.00 E-value=7.6e-07 Score=74.02 Aligned_cols=220 Identities=12% Similarity=0.045 Sum_probs=143.8
Q ss_pred CCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccC
Q 014125 137 TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKG 216 (430)
Q Consensus 137 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~ 216 (430)
++.++.+--..+.|..||..+++.. .+.... .+.++++.+++.+++++. ..|.++|..++.. ..+....
T Consensus 29 ~~~l~wvDi~~~~I~r~d~~~g~~~-~~~~~~------~~~~i~~~~dg~l~va~~-~gl~~~d~~tg~~--~~l~~~~- 97 (295)
T d2ghsa1 29 SGTAWWFNILERELHELHLASGRKT-VHALPF------MGSALAKISDSKQLIASD-DGLFLRDTATGVL--TLHAELE- 97 (295)
T ss_dssp TTEEEEEEGGGTEEEEEETTTTEEE-EEECSS------CEEEEEEEETTEEEEEET-TEEEEEETTTCCE--EEEECSS-
T ss_pred CCEEEEEECCCCEEEEEECCCCeEE-EEECCC------CcEEEEEecCCCEEEEEe-CccEEeeccccee--eEEeeee-
Confidence 4555555556788999999887643 333322 667899999998888765 4688899876432 1111111
Q ss_pred CCCCCCcceEEEEEcCCCCceEEEecC----CCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEE
Q 014125 217 NKEGQAGIMSAIAFSPTHTGMLAIGSY----SQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILC 292 (430)
Q Consensus 217 ~~~~~~~~v~~~~~~~~~~~~l~~~~~----dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i 292 (430)
.......+..+.+.| .+++.++... .+.-.+|.+..++...... .-...+.++|+++++.++.+....+.|..
T Consensus 98 -~~~~~~~~nd~~vd~-~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~-~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~ 174 (295)
T d2ghsa1 98 -SDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVAKGKVTKLFA-DISIPNSICFSPDGTTGYFVDTKVNRLMR 174 (295)
T ss_dssp -TTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEETTEEEEEEE-EESSEEEEEECTTSCEEEEEETTTCEEEE
T ss_pred -cCCCcccceeeEECC-CCCEEEEeccccccccceeEeeecCCcEEEEee-ccCCcceeeecCCCceEEEeecccceeeE
Confidence 112234688999999 4555554322 2345566666666554443 33456889999999988877757889999
Q ss_pred EeCCCCceE----EEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEc-CCCc
Q 014125 293 WDLRKAVQV----VYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFH-PFLP 367 (430)
Q Consensus 293 ~d~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~ 367 (430)
|++...... ................++++.+|++.++.-..+.|..||. +++.+..+......+++++|- |+.+
T Consensus 175 ~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~d~~ 253 (295)
T d2ghsa1 175 VPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDAS 253 (295)
T ss_dssp EEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSC
T ss_pred eeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEEeCCCCC
Confidence 987532111 1111222334556778999999988777667788999995 688888887666779999996 6666
Q ss_pred EEEE
Q 014125 368 MAAS 371 (430)
Q Consensus 368 ~l~s 371 (430)
.|..
T Consensus 254 ~Lyv 257 (295)
T d2ghsa1 254 RLLV 257 (295)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.94 E-value=1.4e-06 Score=77.28 Aligned_cols=287 Identities=9% Similarity=-0.002 Sum_probs=150.8
Q ss_pred CceeEEEECcCCceEEEec---------CCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecccc
Q 014125 61 NFLKGIKWSPDGSSFLTSS---------EDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (430)
Q Consensus 61 ~~v~~~~~sp~~~~l~s~~---------~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (430)
-.+....||||+++++... ..+.+.++|+.++....-.. .......+....|
T Consensus 61 ~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~---------------~~~~~~~l~~~~w---- 121 (465)
T d1xfda1 61 LRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDP---------------PEVSNAKLQYAGW---- 121 (465)
T ss_dssp TTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCC---------------TTCCSCCCSBCCB----
T ss_pred cccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccC---------------ccCCccccceeee----
Confidence 3567788999999988763 35678889988764311000 0001123444566
Q ss_pred CccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccc------------c-ccceEEEEECCCCcEEEEE--cCCeE
Q 014125 132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVD------------E-ITAAFSVAFNPTGTKIFAG--YNKSV 196 (430)
Q Consensus 132 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~------------~-~~~v~~~~~~~~~~~l~~~--~d~~i 196 (430)
||||+.+|... ++.|.+.+..++..++......... . ...-.++-|||||+.|+.. .+..|
T Consensus 122 ---SPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V 197 (465)
T d1xfda1 122 ---GPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRV 197 (465)
T ss_dssp ---CSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTS
T ss_pred ---ccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEeccccc
Confidence 88999998875 5668888887776555443221100 0 0112467899999999943 45555
Q ss_pred EEEEcCCCCCc----cccc---------------------------ccccCCCCCCCcceEEEEEcCCCCceEEEecC-C
Q 014125 197 RVFDVHRPGRD----FEKY---------------------------STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY-S 244 (430)
Q Consensus 197 ~v~d~~~~~~~----~~~~---------------------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d 244 (430)
..+.+...... .... .............+..+.|+|+ +.+++.... +
T Consensus 198 ~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d-~~~~~~~~nR~ 276 (465)
T d1xfda1 198 PIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATS-TKVAVTWLNRA 276 (465)
T ss_dssp CEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSS-SEEEEEEEETT
T ss_pred ceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCC-CeEEEEEEccc
Confidence 55544321100 0000 0000001112234678899984 455554322 2
Q ss_pred ---CeEEEEEcCCceeeEEeeccc-cC----eEEEEEccCCCEEEE--EecCCC--eEEEEeCCC-----CceEEEEeec
Q 014125 245 ---QTSAIYREDNMELLYVLHGQE-GG----VTHVQFSRDGNYLYT--GGRKDP--YILCWDLRK-----AVQVVYKLYR 307 (430)
Q Consensus 245 ---g~v~~~d~~~~~~~~~~~~~~-~~----i~~~~~~~~~~~l~~--~~~~d~--~i~i~d~~~-----~~~~~~~~~~ 307 (430)
..|.++|..+++....+.... +. -....|+|+|+.++. ....+| .++..++.. .......+
T Consensus 277 q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~L-- 354 (465)
T d1xfda1 277 QNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSI-- 354 (465)
T ss_dssp SCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBS--
T ss_pred cccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEe--
Confidence 357888999887655544222 22 234688999985432 221333 344433221 11111111
Q ss_pred ccCCccceEE-EEEcCCCCEE-EEEccCC--c--EEEEEcCCCCeeccc---ccccCCeeEEEEcCCCcEEEEeeC
Q 014125 308 SSEHTNQRIL-FDIEPSGRHL-GTGGQDG--L--VHIYDLQTGKWISGF---QAAADTVNGFSFHPFLPMAASSSG 374 (430)
Q Consensus 308 ~~~~~~~v~~-~~~~~~~~~l-~~~~~dg--~--i~vwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~s~~~ 374 (430)
....-.|.. +.|+++++.| +++..++ . ++-.++..+.....+ .........+.|+|++++++....
T Consensus 355 -T~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~s 429 (465)
T d1xfda1 355 -TSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCE 429 (465)
T ss_dssp -CCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECC
T ss_pred -ccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEEEee
Confidence 112223444 4688877665 3554432 2 444444433322222 223446779999999998876543
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.88 E-value=5.1e-07 Score=80.30 Aligned_cols=278 Identities=12% Similarity=0.018 Sum_probs=146.5
Q ss_pred EECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEe-
Q 014125 67 KWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTT- 145 (430)
Q Consensus 67 ~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~- 145 (430)
.|.+++.++.. ..+|.|.+||+.+++...-+.... .....+....| |||+++++...
T Consensus 23 ~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~--------------~~~~~~~~~~~-------SpD~~~vl~~~~ 80 (465)
T d1xfda1 23 KWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKK--------------IESLRAIRYEI-------SPDREYALFSYN 80 (465)
T ss_dssp CBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTT--------------TTTTTCSEEEE-------CTTSSEEEEEES
T ss_pred EEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCcc--------------ccccccceeEE-------CCCCCeEEEEEc
Confidence 57888877654 557889999998664311111000 01112333444 88999887763
Q ss_pred --------CCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccC-
Q 014125 146 --------RDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKG- 216 (430)
Q Consensus 146 --------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~- 216 (430)
..+.+.++|+.++........... ...+....|+|||+.|+-..++.|.+.+...+............
T Consensus 81 ~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~---~~~l~~~~wSPDG~~iafv~~~nl~~~~~~~~~~~~lt~~g~~~~ 157 (465)
T d1xfda1 81 VEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVS---NAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGV 157 (465)
T ss_dssp CCCCSSSCCCSEEEEEESSSCCCEECCCTTCC---SCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTT
T ss_pred ccceeEeeccccEEEEEccCCceeeccCccCC---ccccceeeeccCCceEEEEecceEEEEecCCCceEEEecccCcce
Confidence 357789999998875443222211 11455678999999999777888988887653221110000000
Q ss_pred CCCC---------CCcceEEEEEcCCCCceEEEec-CCCe---------------------------------EEEEEcC
Q 014125 217 NKEG---------QAGIMSAIAFSPTHTGMLAIGS-YSQT---------------------------------SAIYRED 253 (430)
Q Consensus 217 ~~~~---------~~~~v~~~~~~~~~~~~l~~~~-~dg~---------------------------------v~~~d~~ 253 (430)
...+ ....-..+-|+|++. .||... .+.. +.++|+.
T Consensus 158 i~nG~~d~vyeee~~~~~~a~~WSPDgk-~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~ 236 (465)
T d1xfda1 158 IYNGLSDWLYEEEILKTHIAHWWSPDGT-RLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLN 236 (465)
T ss_dssp EEEEECCHHHHHTTSSSSEEEEECTTSS-EEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESS
T ss_pred eeccccchhhhhhhccccceEEECCCCC-eEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecC
Confidence 0000 011225778999555 454432 2232 3444444
Q ss_pred CceeeEEee------ccccCeEEEEEccCCCEEEEEecCC---CeEEEEeCCCCceEEEEeecccCCcc-ceEEEEEcCC
Q 014125 254 NMELLYVLH------GQEGGVTHVQFSRDGNYLYTGGRKD---PYILCWDLRKAVQVVYKLYRSSEHTN-QRILFDIEPS 323 (430)
Q Consensus 254 ~~~~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~ 323 (430)
++....... ....-+..+.|+|+++.++.....+ ..|.++|..++...........+.-. .-....|+|+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~d 316 (465)
T d1xfda1 237 GPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKD 316 (465)
T ss_dssp SSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTT
T ss_pred CCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccC
Confidence 332211111 1112367889999998666654222 25788899887544322211111100 1124678999
Q ss_pred CCEEE---EEccCC--cEEEEEcC------CCCeecccccccCCeeEE-EEcCCCcEEE
Q 014125 324 GRHLG---TGGQDG--LVHIYDLQ------TGKWISGFQAAADTVNGF-SFHPFLPMAA 370 (430)
Q Consensus 324 ~~~l~---~~~~dg--~i~vwd~~------~~~~~~~~~~~~~~v~~~-~~~~~~~~l~ 370 (430)
|+.++ ....+| .++...+. .++.+..+....-.|..+ .|+++++.+.
T Consensus 317 g~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vy 375 (465)
T d1xfda1 317 GRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIY 375 (465)
T ss_dssp SCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEE
T ss_pred CCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEE
Confidence 97532 222233 34444432 233344444334456665 6888777554
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.62 E-value=2.1e-05 Score=65.01 Aligned_cols=195 Identities=11% Similarity=0.067 Sum_probs=121.6
Q ss_pred CCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCc
Q 014125 60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC 139 (430)
Q Consensus 60 ~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (430)
...+.++++.++|.++++ +.+ -+.++|..+++........ .......+.++.. .++|+
T Consensus 58 ~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~-------------~~~~~~~~nd~~v-------d~~G~ 115 (295)
T d2ghsa1 58 PFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELE-------------SDLPGNRSNDGRM-------HPSGA 115 (295)
T ss_dssp SSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSS-------------TTCTTEEEEEEEE-------CTTSC
T ss_pred CCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeee-------------cCCCcccceeeEE-------CCCCC
Confidence 346889999999987775 444 5888998876432110000 0001124555655 67887
Q ss_pred eEEEEeC----CCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-E-cCCeEEEEEcCCCCCccccccc
Q 014125 140 VFASTTR----DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-G-YNKSVRVFDVHRPGRDFEKYST 213 (430)
Q Consensus 140 ~l~~~~~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~-~d~~i~v~d~~~~~~~~~~~~~ 213 (430)
+.++... .+.-.+|.+..++......... ....++|+++++.+.. . ..+.|..|+++...........
T Consensus 116 iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~------~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~ 189 (295)
T d2ghsa1 116 LWIGTMGRKAETGAGSIYHVAKGKVTKLFADIS------IPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAE 189 (295)
T ss_dssp EEEEEEETTCCTTCEEEEEEETTEEEEEEEEES------SEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCE
T ss_pred EEEEeccccccccceeEeeecCCcEEEEeeccC------CcceeeecCCCceEEEeecccceeeEeeecccccccccceE
Confidence 7665432 2345677777776554443222 4568999999987764 3 5788999988643221111001
Q ss_pred ccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEc-cCCCEEEEEe
Q 014125 214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFS-RDGNYLYTGG 284 (430)
Q Consensus 214 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~ 284 (430)
......+..+....+++.. ++++.++.-..+.|..||. +++.+..+......+++++|- |+.+.|++++
T Consensus 190 ~~~~~~~~~g~pdG~~vD~-~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTt 259 (295)
T d2ghsa1 190 VFIDSTGIKGGMDGSVCDA-EGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTS 259 (295)
T ss_dssp EEEECTTSSSEEEEEEECT-TSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEE
T ss_pred EEeccCcccccccceEEcC-CCCEEeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEEeCCCCCEEEEEE
Confidence 1111123345678899988 5667777667889999995 578887777555678999995 6777777654
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.61 E-value=2.9e-06 Score=69.87 Aligned_cols=234 Identities=12% Similarity=0.075 Sum_probs=121.5
Q ss_pred EECcC--CceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEE
Q 014125 67 KWSPD--GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFAST 144 (430)
Q Consensus 67 ~~sp~--~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 144 (430)
..||| |+.+|-.+. |.|.+.|+.+++. .....+...+...+| ||||+.||..
T Consensus 5 ~~sPdi~G~~v~f~~~-~dl~~~d~~~g~~------------------~~Lt~~~~~~~~p~~-------SPDG~~iaf~ 58 (281)
T d1k32a2 5 LLNPDIHGDRIIFVCC-DDLWEHDLKSGST------------------RKIVSNLGVINNARF-------FPDGRKIAIR 58 (281)
T ss_dssp CEEEEEETTEEEEEET-TEEEEEETTTCCE------------------EEEECSSSEEEEEEE-------CTTSSEEEEE
T ss_pred ccCCCCCCCEEEEEeC-CcEEEEECCCCCE------------------EEEecCCCcccCEEE-------CCCCCEEEEE
Confidence 35788 998887654 5788889886532 122334456777888 8899998865
Q ss_pred eC-C-----CcEEEEeccCCceeeeeecccc-cccccceEEEEECCCCcEEEEEcC-------CeEEEEEcCCCCCcccc
Q 014125 145 TR-D-----HPIHLWDATTGLLRCTYRAYDA-VDEITAAFSVAFNPTGTKIFAGYN-------KSVRVFDVHRPGRDFEK 210 (430)
Q Consensus 145 ~~-d-----g~i~vwd~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~d-------~~i~v~d~~~~~~~~~~ 210 (430)
.. + ..|.+++..+++.......... ...........|+|+++.|+.... ..+...+.....
T Consensus 59 ~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~----- 133 (281)
T d1k32a2 59 VMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGIN----- 133 (281)
T ss_dssp EEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTE-----
T ss_pred EeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCce-----
Confidence 42 2 2477778877765543222111 011124567889999999885411 123344443211
Q ss_pred cccccCCCCCCCcceEEEEEcCCCCceEEEecCCC-----------eEEEEEcCCceeeEEeeccccCeEEEEEccCCCE
Q 014125 211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ-----------TSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNY 279 (430)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----------~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 279 (430)
.. .......... +.+++...++...... ................ ..........++++.
T Consensus 134 ---~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-- 203 (281)
T d1k32a2 134 ---FV---PLNLGPATHI-LFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIV-DMSTHVSSPVIVGHR-- 203 (281)
T ss_dssp ---EE---ECCSCSCSEE-EEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEE-CCSSCCEEEEEETTE--
T ss_pred ---eE---EecCCcccee-eecCCCeEEEeeccccceeeeeccCCcceeeeeccccceeecc-CCccccceeeeeccc--
Confidence 00 0011111222 2332444444433221 1111122222222222 223344455555543
Q ss_pred EEEEecC--CCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeec
Q 014125 280 LYTGGRK--DPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWIS 348 (430)
Q Consensus 280 l~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 348 (430)
++..... ...|.++|+.+.... .+.. ..... ...|+|||+.|+.. .++.|+++|+.+++...
T Consensus 204 ~~~~~~~~~~~~l~~~d~~g~~~~--~lt~--~~~~~--~~~~SpDG~~I~f~-~~~~l~~~d~~~g~~~~ 267 (281)
T d1k32a2 204 IYFITDIDGFGQIYSTDLDGKDLR--KHTS--FTDYY--PRHLNTDGRRILFS-KGGSIYIFNPDTEKIEK 267 (281)
T ss_dssp EEEEECTTSSCEEEEEETTSCSCE--ECCC--CCSSC--EEEEEESSSCEEEE-ETTEEEEECTTTCCEEE
T ss_pred cceecccccccceEEEeCCCCceE--Eeec--CCCcc--cccCcCCCCEEEEE-eCCEEEEEECCCCCEEE
Confidence 3333313 346778888766433 2211 11222 34689999987764 46889999999887643
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.49 E-value=2.1e-05 Score=64.41 Aligned_cols=232 Identities=10% Similarity=0.033 Sum_probs=113.4
Q ss_pred CCC--CceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE-cCC-----eEEEEEcCCCC
Q 014125 135 DPT--SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNK-----SVRVFDVHRPG 205 (430)
Q Consensus 135 ~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~-----~i~v~d~~~~~ 205 (430)
+|+ |+.++..+ +|.|.+.|+.+++..+. ..... .+...+|||||+.|+ +. .++ .|.+++...+.
T Consensus 7 sPdi~G~~v~f~~-~~dl~~~d~~~g~~~~L-t~~~~-----~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~ 79 (281)
T d1k32a2 7 NPDIHGDRIIFVC-CDDLWEHDLKSGSTRKI-VSNLG-----VINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE 79 (281)
T ss_dssp EEEEETTEEEEEE-TTEEEEEETTTCCEEEE-ECSSS-----EEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE
T ss_pred CCCCCCCEEEEEe-CCcEEEEECCCCCEEEE-ecCCC-----cccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCc
Confidence 677 88887664 45688899998876543 33222 667889999999998 43 222 35555654431
Q ss_pred CcccccccccCCCCCCCcceEEEEEcCCCCceEEEecC-C-----CeEEEEEcCCceeeEEeeccccCeEEEEEccCCCE
Q 014125 206 RDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY-S-----QTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNY 279 (430)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d-----g~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 279 (430)
...+..................|+|++. .++.... + ..+...+...+..... +........ .+++..
T Consensus 80 --~~~lt~~~~~~~~~~~~~~~~~~spdg~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~ 152 (281)
T d1k32a2 80 --IKRITYFSGKSTGRRMFTDVAGFDPDGN-LIISTDAMQPFSSMTCLYRVENDGINFVPL---NLGPATHIL-FADGRR 152 (281)
T ss_dssp --EEECCCCCEEEETTEECSEEEEECTTCC-EEEEECTTSSSTTCCEEEEEEGGGTEEEEC---CSCSCSEEE-EETTEE
T ss_pred --eEEeeecCCCccCccccccccccCCCCC-EEEEEEccCCCccceeeeeecCCCceeEEe---cCCccceee-ecCCCe
Confidence 1111111111112223456788999554 4444322 1 2344555554443222 222233333 344443
Q ss_pred EEEEecCCC-----------eEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEcc--CCcEEEEEcCCCCe
Q 014125 280 LYTGGRKDP-----------YILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQ--DGLVHIYDLQTGKW 346 (430)
Q Consensus 280 l~~~~~~d~-----------~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~ 346 (430)
++.....+. .......... ..... ...........++++. .+..... ...|+++|+.+++.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~g~~~ 226 (281)
T d1k32a2 153 VIGRNTFELPHWKGYRGGTRGKIWIEVNSG-AFKKI----VDMSTHVSSPVIVGHR-IYFITDIDGFGQIYSTDLDGKDL 226 (281)
T ss_dssp EEEESCSCCTTSTTCCSTTCCEEEEEEETT-EEEEE----ECCSSCCEEEEEETTE-EEEEECTTSSCEEEEEETTSCSC
T ss_pred EEEeeccccceeeeeccCCcceeeeecccc-ceeec----cCCccccceeeeeccc-cceecccccccceEEEeCCCCce
Confidence 333221111 1111111111 11101 1122333445555543 2333333 23588888887665
Q ss_pred ecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCCCccccccCCCcEEEEeecccccc
Q 014125 347 ISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYASMM 406 (430)
Q Consensus 347 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~~~ 406 (430)
....... ......|+|+|+.|+... ++.|+++++..++..
T Consensus 227 ~~lt~~~--~~~~~~~SpDG~~I~f~~------------------~~~l~~~d~~~g~~~ 266 (281)
T d1k32a2 227 RKHTSFT--DYYPRHLNTDGRRILFSK------------------GGSIYIFNPDTEKIE 266 (281)
T ss_dssp EECCCCC--SSCEEEEEESSSCEEEEE------------------TTEEEEECTTTCCEE
T ss_pred EEeecCC--CcccccCcCCCCEEEEEe------------------CCEEEEEECCCCCEE
Confidence 4322222 223346899999887653 345666666655543
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.43 E-value=0.00021 Score=56.90 Aligned_cols=218 Identities=11% Similarity=0.134 Sum_probs=137.1
Q ss_pred CCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccc
Q 014125 135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTL 214 (430)
Q Consensus 135 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~ 214 (430)
+|..+.||.-+ ..+++++|+++.+.+..+.... +|.-..|-.+. .|+--.+..|+-|+++....+.+.+...
T Consensus 71 hP~~~IiALra-g~~LQiFnletK~klks~~~~e------~VvfWkWis~~-~L~lVT~taVYHW~~~g~s~P~k~fdR~ 142 (327)
T d1utca2 71 NPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD------DVTFWKWISLN-TVALVTDNAVYHWSMEGESQPVKMFDRH 142 (327)
T ss_dssp CSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS------CCCEEEESSSS-EEEEECSSEEEEEESSSSCCCEEEEECC
T ss_pred CCCCcEEEEec-CCeEEEEehhHhhhhceEEcCC------CcEEEEecCCC-EEEEEcCCceEEEcccCCCCchhhhhhc
Confidence 55666776655 5579999999999888877765 67778887554 4554457789999997654443333222
Q ss_pred cCCCCCCCcceEEEEEcCCCCceEEEec------CCCeEEEEEcCCceeeEEeeccccCeEEEEEccC--CCEEEEEe--
Q 014125 215 KGNKEGQAGIMSAIAFSPTHTGMLAIGS------YSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRD--GNYLYTGG-- 284 (430)
Q Consensus 215 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~------~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~-- 284 (430)
. .+ ....|..-..+++...++++|= -.|.+.+|..+. +..+.+++|.+....+.+.-+ ...|++-+
T Consensus 143 ~-~L--~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r 218 (327)
T d1utca2 143 S-SL--AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVR 218 (327)
T ss_dssp G-GG--TTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-TEEEEECCSEEEEEEECCTTCSSCEEEEEEEEE
T ss_pred c-cc--cCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEecc-CcCccccceeeeeEEEEcCCCCCCceEEEEEEC
Confidence 1 11 2345667777775554444442 236788998864 455677777665555544321 11233222
Q ss_pred -cCCCeEEEEeCCCCce--------EEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccC
Q 014125 285 -RKDPYILCWDLRKAVQ--------VVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAAD 355 (430)
Q Consensus 285 -~~d~~i~i~d~~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 355 (430)
...+++++.++..... .....+.......-..++..++.-..+..-+.-|.|++||+.++.++..-+-..+
T Consensus 219 ~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~ 298 (327)
T d1utca2 219 GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGE 298 (327)
T ss_dssp ETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred CCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCC
Confidence 1346899998865311 1111222233455667788888878888889999999999999999887665555
Q ss_pred CeeEEEEcC
Q 014125 356 TVNGFSFHP 364 (430)
Q Consensus 356 ~v~~~~~~~ 364 (430)
+|-.-+-+.
T Consensus 299 ~iF~~a~~~ 307 (327)
T d1utca2 299 TIFVTAPHE 307 (327)
T ss_dssp CEEEEEEET
T ss_pred ceEEeccCC
Confidence 554333333
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.35 E-value=2.4e-05 Score=65.95 Aligned_cols=225 Identities=9% Similarity=0.034 Sum_probs=127.3
Q ss_pred CCCceEEEEe-CCCcEEEEeccCCceeeeeecccccccccceEEEEEC--CCCcEEEEEcC-------------------
Q 014125 136 PTSCVFASTT-RDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFN--PTGTKIFAGYN------------------- 193 (430)
Q Consensus 136 ~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~d------------------- 193 (430)
+||++|+... .++.|.+.|+.+.+..+........ .+..+... |...++++...
T Consensus 97 yDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~----~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~ 172 (459)
T d1fwxa2 97 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAK----GIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYV 172 (459)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCC----SEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EE
T ss_pred cceeEEEEEcCCCceEEEEECcceeeeEEEecCCCC----CCceeecccCCCeEEEEccCccccccCCCCccccchhhcc
Confidence 4788877665 5788999999999887766554332 34455554 45566664322
Q ss_pred CeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCC--------------eE------------
Q 014125 194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ--------------TS------------ 247 (430)
Q Consensus 194 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--------------~v------------ 247 (430)
+.+.++|..+....++.. . ......+.++|++...++++.... .+
T Consensus 173 ~~~t~ID~~tm~V~~QV~--V-------~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av 243 (459)
T d1fwxa2 173 NVFTAVDADKWEVAWQVL--V-------SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAI 243 (459)
T ss_dssp EEEEEEETTTTEEEEEEE--E-------SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHH
T ss_pred eEEEEEecCCceEEEEee--e-------CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhh
Confidence 224556665422111110 0 123456788886554444432211 12
Q ss_pred -----------EEEEcCCc---eeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEE-------EEee
Q 014125 248 -----------AIYREDNM---ELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVV-------YKLY 306 (430)
Q Consensus 248 -----------~~~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~-------~~~~ 306 (430)
.+.|.++. ..+..+. -......+.++|||+++++++.-+.++.++|++.-.... ....
T Consensus 244 ~~Gk~~eingV~VVD~~~~~~~~v~~yIP-VpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~ 322 (459)
T d1fwxa2 244 AAGDYQELNGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVV 322 (459)
T ss_dssp HHTCSEEETTEEEEECSGG--CSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEE
T ss_pred hcCCcEEeCCceeecccccCCcceeEEEe-cCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEE
Confidence 33333321 1111122 223456789999999999999899999999986321110 0001
Q ss_pred cccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCC----------Ceeccccc-----ccCCeeEEEEcCCCcEEEE
Q 014125 307 RSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTG----------KWISGFQA-----AADTVNGFSFHPFLPMAAS 371 (430)
Q Consensus 307 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~----------~~~~~~~~-----~~~~v~~~~~~~~~~~l~s 371 (430)
......-....-+|+..|....+---|..|.-|++... ..+..+.. |.....+-...|+|++|++
T Consensus 323 ~e~elglgPLht~fd~~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~dgk~l~~ 402 (459)
T d1fwxa2 323 AEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVC 402 (459)
T ss_dssp ECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEE
T ss_pred eecccCcCccccccCCCceEEEEeeccceEEEEecchhhhhhccccCCcceeccccccCCCCCccCcCCcCCCCCCEEEE
Confidence 11123344566789888876666678999999998532 23333332 2221122234789999998
Q ss_pred eeC
Q 014125 372 SSG 374 (430)
Q Consensus 372 ~~~ 374 (430)
...
T Consensus 403 ~nk 405 (459)
T d1fwxa2 403 LSK 405 (459)
T ss_dssp EES
T ss_pred ecc
Confidence 763
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.25 E-value=0.00066 Score=54.56 Aligned_cols=176 Identities=9% Similarity=-0.007 Sum_probs=110.2
Q ss_pred ceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEc
Q 014125 175 AAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRE 252 (430)
Q Consensus 175 ~v~~~~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~ 252 (430)
.+.+++|++..+.|. +. .++.|+..+++..... .+. ......+..+++...+++++.+-...+.|.+.++
T Consensus 37 ~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~-----~v~---~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~ 108 (263)
T d1npea_ 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT-----TII---RQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKM 108 (263)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE-----EEE---CTTCCCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred cEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcE-----EEE---EeccccccEEEEeccCCeEEEeccCCCEEEEEec
Confidence 567899998888777 44 6688888888653221 111 1112357889998756667777777889999998
Q ss_pred CCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCe--EEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEE
Q 014125 253 DNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPY--ILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTG 330 (430)
Q Consensus 253 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~--i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 330 (430)
........+.........++++|...+|+......+. |.--++....... +. ...-.....+++++.++.|..+
T Consensus 109 dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~--i~--~~~~~~P~glaiD~~~~~lYw~ 184 (263)
T d1npea_ 109 DGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRI--LA--QDNLGLPNGLTFDAFSSQLCWV 184 (263)
T ss_dssp TSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEE--EE--CTTCSCEEEEEEETTTTEEEEE
T ss_pred CCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCcee--ee--eecccccceEEEeecCcEEEEE
Confidence 7655433333333568899999988888766522233 4444555443222 11 1233456789999887776555
Q ss_pred -ccCCcEEEEEcCCCCeecccccccCCeeEEEEc
Q 014125 331 -GQDGLVHIYDLQTGKWISGFQAAADTVNGFSFH 363 (430)
Q Consensus 331 -~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~ 363 (430)
...+.|...+++.......+.+.. ...+|++.
T Consensus 185 d~~~~~I~~~~~~g~~~~~v~~~~~-~P~~lav~ 217 (263)
T d1npea_ 185 DAGTHRAECLNPAQPGRRKVLEGLQ-YPFAVTSY 217 (263)
T ss_dssp ETTTTEEEEEETTEEEEEEEEECCC-SEEEEEEE
T ss_pred eCCCCEEEEEECCCCCeEEEECCCC-CcEEEEEE
Confidence 456789999987554333333222 23466665
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.23 E-value=0.00073 Score=54.30 Aligned_cols=219 Identities=12% Similarity=0.042 Sum_probs=130.3
Q ss_pred CeeeeeeeccccCccCCCCceEE-EEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE-cCCeE
Q 014125 120 ESVYDFCWFPHMSASDPTSCVFA-STTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSV 196 (430)
Q Consensus 120 ~~v~~~~~~~~~~~~~~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i 196 (430)
..+..++|. ...+.++ +-..++.|+..++..+.......... ..+.++++...+..|. +. ..+.|
T Consensus 36 ~~~~~ld~D-------~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~-----~~p~~iAvD~~~~~lY~~d~~~~~I 103 (263)
T d1npea_ 36 KVIIGLAFD-------CVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDL-----GSPEGIALDHLGRTIFWTDSQLDRI 103 (263)
T ss_dssp EEEEEEEEE-------TTTTEEEEEETTTTEEEEEESSSCCCEEEECTTC-----CCEEEEEEETTTTEEEEEETTTTEE
T ss_pred CcEEEEEEE-------eCCCEEEEEECCCCeEEEEEcccCCcEEEEEecc-----ccccEEEEeccCCeEEEeccCCCEE
Confidence 356677773 3344444 44556778888887655444333221 2567889987676666 44 56799
Q ss_pred EEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecC--CCeEEEEEcCCceeeEEeeccccCeEEEEEc
Q 014125 197 RVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY--SQTSAIYREDNMELLYVLHGQEGGVTHVQFS 274 (430)
Q Consensus 197 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~ 274 (430)
.+.+++..... .+. ......+..++++|..+.++.+-.. .+.|...++............-....+++++
T Consensus 104 ~~~~~dg~~~~-----~l~---~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD 175 (263)
T d1npea_ 104 EVAKMDGTQRR-----VLF---DTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFD 175 (263)
T ss_dssp EEEETTSCSCE-----EEE---CSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEE
T ss_pred EEEecCCceEE-----EEe---cccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEe
Confidence 99998753221 111 1122457899999966655555333 2345555665444333333233456899999
Q ss_pred cCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccccc-c
Q 014125 275 RDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQA-A 353 (430)
Q Consensus 275 ~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~ 353 (430)
+.++.|+.+....+.|...++...... .+.. +. .....+++. ++.+..+-...+.|...|..+++.+..+.. .
T Consensus 176 ~~~~~lYw~d~~~~~I~~~~~~g~~~~--~v~~--~~-~~P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~ 249 (263)
T d1npea_ 176 AFSSQLCWVDAGTHRAECLNPAQPGRR--KVLE--GL-QYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHK 249 (263)
T ss_dssp TTTTEEEEEETTTTEEEEEETTEEEEE--EEEE--CC-CSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSS
T ss_pred ecCcEEEEEeCCCCEEEEEECCCCCeE--EEEC--CC-CCcEEEEEE-CCEEEEEECCCCEEEEEECCCCccceEECCCC
Confidence 988888887657889999999765332 2222 11 223567765 333444444668899999988887665532 2
Q ss_pred cCCeeEEEEcC
Q 014125 354 ADTVNGFSFHP 364 (430)
Q Consensus 354 ~~~v~~~~~~~ 364 (430)
.....+|+..+
T Consensus 250 ~~~~~gi~v~~ 260 (263)
T d1npea_ 250 QTRLYGITIAL 260 (263)
T ss_dssp CCCCCCEEEEC
T ss_pred CCCcceEEEeC
Confidence 23445555544
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.14 E-value=0.0011 Score=53.27 Aligned_cols=201 Identities=7% Similarity=0.001 Sum_probs=121.8
Q ss_pred cEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCCcccccccccCCCCCCCcceE
Q 014125 149 PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMS 226 (430)
Q Consensus 149 ~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~ 226 (430)
.|+-.++.+.......... ..+.++.|++....|. +. ..+.|...+++........ ... .......+.
T Consensus 11 ~I~~~~l~~~~~~~~~~~~------~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~-~~~---~~~~~~~p~ 80 (266)
T d1ijqa1 11 EVRKMTLDRSEYTSLIPNL------RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY-DTV---ISRDIQAPD 80 (266)
T ss_dssp SEEEEETTSCCCEEEECSC------SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------C-EEE---ECSSCSCCC
T ss_pred eEEEEECCCCcceeeeCCC------CceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcce-EEE---EeCCCCCcc
Confidence 4888898876554443322 2567899998888777 44 5677777776542211100 011 111123466
Q ss_pred EEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEec-CCCeEEEEeCCCCceEEEEe
Q 014125 227 AIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGR-KDPYILCWDLRKAVQVVYKL 305 (430)
Q Consensus 227 ~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-~d~~i~i~d~~~~~~~~~~~ 305 (430)
.+++.+.+++++.+-...+.|.+.++........+.........++++|...+|+.+.. ..+.|.-.++...... .+
T Consensus 81 glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~--~l 158 (266)
T d1ijqa1 81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY--SL 158 (266)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE--EE
T ss_pred eEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCcee--cc
Confidence 78888767778887778889999999876655555544566889999997777776541 3456777777654332 22
Q ss_pred ecccCCccceEEEEEcCCCCEEEEE-ccCCcEEEEEcCCCCeeccccc--ccCCeeEEEEc
Q 014125 306 YRSSEHTNQRILFDIEPSGRHLGTG-GQDGLVHIYDLQTGKWISGFQA--AADTVNGFSFH 363 (430)
Q Consensus 306 ~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~--~~~~v~~~~~~ 363 (430)
. ...-.....+++++.+..|..+ ...+.|...+++.......... ......+|++.
T Consensus 159 ~--~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~ 217 (266)
T d1ijqa1 159 V--TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF 217 (266)
T ss_dssp E--CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE
T ss_pred c--ccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE
Confidence 1 1233456789999887766555 5567899999875443222222 22234566665
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=98.02 E-value=0.003 Score=53.85 Aligned_cols=283 Identities=13% Similarity=0.034 Sum_probs=139.5
Q ss_pred eeEEEECcCCceEEEecCCC-----------eEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecccc
Q 014125 63 LKGIKWSPDGSSFLTSSEDK-----------TLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (430)
Q Consensus 63 v~~~~~sp~~~~l~s~~~dg-----------~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (430)
+.......+|+.++.|+.+. .+.+||..++...... .....+.......++
T Consensus 22 ~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~--------------~~~~~~~~~~~~~~~---- 83 (387)
T d1k3ia3 22 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRT--------------VTVTKHDMFCPGISM---- 83 (387)
T ss_dssp SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCE--------------EEECSCCCSSCEEEE----
T ss_pred cEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecC--------------CCCCCcccceeEEEE----
Confidence 34445566889888887531 3778999876432110 011111111122333
Q ss_pred CccCCCCceEEEEeCC-CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cC------CeEEEEEcCC
Q 014125 132 SASDPTSCVFASTTRD-HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN------KSVRVFDVHR 203 (430)
Q Consensus 132 ~~~~~~~~~l~~~~~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d------~~i~v~d~~~ 203 (430)
.+++.+++.|+.+ ..+.+||..+......-.... ...-.+.+..+++++++.+ .+ ..+.+||..+
T Consensus 84 ---~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~----~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~ 156 (387)
T d1k3ia3 84 ---DGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQV----ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS 156 (387)
T ss_dssp ---CTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSS----CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred ---ecCCcEEEeecCCCcceeEecCccCcccccccccc----cccccceeeecCCceeeeccccccccccceeeeecCCC
Confidence 5688888888765 589999998876543222111 1123356777899888854 21 4689999876
Q ss_pred CCCcccccccccC---CCCCCC-----cceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEee--cc----cc--C
Q 014125 204 PGRDFEKYSTLKG---NKEGQA-----GIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH--GQ----EG--G 267 (430)
Q Consensus 204 ~~~~~~~~~~~~~---~~~~~~-----~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~--~~----~~--~ 267 (430)
.. +........ ....+. ..-..+...+ ++.++..+...+.+.+++..+........ .. .. .
T Consensus 157 ~~--W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (387)
T d1k3ia3 157 KT--WTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWK-KGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMC 233 (387)
T ss_dssp TE--EEEETTSCSGGGCCCCTTGGGTTTCSCCEEECG-GGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBT
T ss_pred Cc--eeecCCCcccccccccccceeeccceeEEEEeC-CCCEEEecCcCCcEEecCcccCcEeeccccccCcccCccccc
Confidence 32 111100000 000000 0001111222 45566677777777788777654332211 00 00 1
Q ss_pred eEEEEE-ccCCCEEEEEecCC-------CeEEEEeCCCC---ceEEEEeecccCCccceEEEEEcCCCCEEEEEccC---
Q 014125 268 VTHVQF-SRDGNYLYTGGRKD-------PYILCWDLRKA---VQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQD--- 333 (430)
Q Consensus 268 i~~~~~-~~~~~~l~~~~~~d-------~~i~i~d~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--- 333 (430)
-.++.+ ..+++.++.++..+ ....+.++... ....... ........-.+....++|++++.|+.+
T Consensus 234 ~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~ 312 (387)
T d1k3ia3 234 GNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFAS-NGLYFARTFHTSVVLPDGSTFITGGQRRGI 312 (387)
T ss_dssp CEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECT-TCCSSCCBSCEEEECTTSCEEEECCBSBCC
T ss_pred ccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeec-cccccccccceeeeccCCeEEEECCcccCc
Confidence 122222 23566666665222 12333333221 1111111 111112222345556899999998853
Q ss_pred --------CcEEEEEcCCCCeec--ccccccCCeeEEEEcCCCcEEEEeeC
Q 014125 334 --------GLVHIYDLQTGKWIS--GFQAAADTVNGFSFHPFLPMAASSSG 374 (430)
Q Consensus 334 --------g~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~s~~~ 374 (430)
..+.+||..+.+... .+......=......+||++++.|+.
T Consensus 313 ~~~~~~~~~~ve~Ydp~~~~W~~~~~~~~~R~~Hs~a~l~~dG~v~v~GG~ 363 (387)
T d1k3ia3 313 PFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 363 (387)
T ss_dssp TTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred cCCCCcEeceEEEEECCCCeEEECCCCCCcccceEEEEECCCCEEEEEeCC
Confidence 147889987665322 11110000012345789999988874
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.01 E-value=0.0029 Score=53.19 Aligned_cols=231 Identities=12% Similarity=0.069 Sum_probs=131.5
Q ss_pred eEEEEeCCCcEEEEeccCCceeeeeecccccccc----------------------------------cc--eEEEEECC
Q 014125 140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEI----------------------------------TA--AFSVAFNP 183 (430)
Q Consensus 140 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~----------------------------------~~--v~~~~~~~ 183 (430)
.|.+|+..|.|+|+-+.+++.+..+......... +. -..+++..
T Consensus 15 ~f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~Td 94 (459)
T d1fwxa2 15 GFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTE 94 (459)
T ss_dssp EEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEET
T ss_pred EEeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccC
Confidence 4778899999999999999887766543211000 00 01344433
Q ss_pred ---CCcEEEEE--cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCC-CCceEEEecCC-------------
Q 014125 184 ---TGTKIFAG--YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPT-HTGMLAIGSYS------------- 244 (430)
Q Consensus 184 ---~~~~l~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~d------------- 244 (430)
||+++++. .++.|-+.|++..... .+..+ .....+..+...++ ...+++.++..
T Consensus 95 GtyDGrylFVNDkan~RVAvIdl~~fkt~--kIi~i-----Pn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d 167 (459)
T d1fwxa2 95 GKYDGRFLFMNDKANTRVARVRCDVMKCD--AILEI-----PNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMED 167 (459)
T ss_dssp TEEEEEEEEEEETTTTEEEEEETTTTEEE--EEEEC-----SSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTC
T ss_pred CccceeEEEEEcCCCceEEEEECcceeee--EEEec-----CCCCCCceeecccCCCeEEEEccCccccccCCCCccccc
Confidence 68888865 6788999998763110 01111 11223454444332 33455554432
Q ss_pred -----CeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCC---------------eEEEE-----------
Q 014125 245 -----QTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDP---------------YILCW----------- 293 (430)
Q Consensus 245 -----g~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~---------------~i~i~----------- 293 (430)
+.+.++|..+.+....+.. .+....+.++++|+++++.+ .+. .+.++
T Consensus 168 ~~~y~~~~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~Ts-yNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~ 245 (459)
T d1fwxa2 168 VANYVNVFTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTS-YNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAA 245 (459)
T ss_dssp GG-EEEEEEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEE-SCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHH
T ss_pred hhhcceEEEEEecCCceEEEEeee-CCChhccccCCCCCEEEEEe-ccccCCcchhhcccccceEEEEechHHhHHhhhc
Confidence 3467789988887766653 35677899999999999887 321 22333
Q ss_pred ------------eCCCC--ceEEEEeecccCCccceEEEEEcCCCCEEEEEc-cCCcEEEEEcCCCC--------eeccc
Q 014125 294 ------------DLRKA--VQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGG-QDGLVHIYDLQTGK--------WISGF 350 (430)
Q Consensus 294 ------------d~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~--------~~~~~ 350 (430)
|.+.. ......+. -......+.++|||+++++++ .+.++.|+|++.-. +...+
T Consensus 246 Gk~~eingV~VVD~~~~~~~~v~~yIP----VpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~ 321 (459)
T d1fwxa2 246 GDYQELNGVKVVDGRKEASSLFTRYIP----IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAV 321 (459)
T ss_dssp TCSEEETTEEEEECSGG--CSSEEEEE----EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGE
T ss_pred CCcEEeCCceeecccccCCcceeEEEe----cCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccE
Confidence 32211 00110010 111233588999999977665 57899999986421 11111
Q ss_pred c---cccCCeeEEEEcCCCcEEEEeeCCceeeecCC
Q 014125 351 Q---AAADTVNGFSFHPFLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 351 ~---~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~ 383 (430)
. ...-....-+|...|....|.--|..+.-|+.
T Consensus 322 ~~e~elglgPLht~fd~~g~aytslfids~v~kw~~ 357 (459)
T d1fwxa2 322 VAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNI 357 (459)
T ss_dssp EECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEH
T ss_pred EeecccCcCccccccCCCceEEEEeeccceEEEEec
Confidence 1 11224566788888765555555666666643
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.95 E-value=0.0028 Score=50.90 Aligned_cols=214 Identities=12% Similarity=-0.014 Sum_probs=122.9
Q ss_pred CeeeeeeeccccCccCCCCceEEEE-eCCCcEEEEeccCCce---eeeeecccccccccceEEEEECCCCcEEE-EE-cC
Q 014125 120 ESVYDFCWFPHMSASDPTSCVFAST-TRDHPIHLWDATTGLL---RCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YN 193 (430)
Q Consensus 120 ~~v~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d 193 (430)
..+.++.| ++..+.|+-. ...+.|.-.++..... ....... . ...+..+++.+.+..|. +. ..
T Consensus 30 ~~~~~id~-------d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~-~---~~~p~glAvD~~~~~lY~~d~~~ 98 (266)
T d1ijqa1 30 RNVVALDT-------EVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR-D---IQAPDGLAVDWIHSNIYWTDSVL 98 (266)
T ss_dssp SSEEEEEE-------ETTTTEEEEEETTTTEEEEEEC--------CEEEECS-S---CSCCCEEEEETTTTEEEEEETTT
T ss_pred CceEEEEE-------EeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeC-C---CCCcceEEEeeccceEEEEecCC
Confidence 45567777 3345555544 3455666666543211 1111111 1 12456788887777776 43 56
Q ss_pred CeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEe-cCCCeEEEEEcCCceeeEEeeccccCeEEEE
Q 014125 194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIG-SYSQTSAIYREDNMELLYVLHGQEGGVTHVQ 272 (430)
Q Consensus 194 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~ 272 (430)
+.|.+.+++...... + ..........++++|..+.++.+. +..+.|...++............-.....++
T Consensus 99 ~~I~v~~~~g~~~~~-----~---~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~ 170 (266)
T d1ijqa1 99 GTVSVADTKGVKRKT-----L---FRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGIT 170 (266)
T ss_dssp TEEEEEETTSSSEEE-----E---EECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEE
T ss_pred CEEEeEecCCceEEE-----E---EcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEE
Confidence 789999987532111 0 112234578899999555555553 2345677777765444333333335678999
Q ss_pred EccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccccc
Q 014125 273 FSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQA 352 (430)
Q Consensus 273 ~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 352 (430)
+++.++.|+.+....+.|...++......... ...........+++.. +.+..+-..++.|+..+..+++....+..
T Consensus 171 iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~--~~~~~~~~p~~lav~~-~~ly~td~~~~~I~~~~~~~g~~~~~~~~ 247 (266)
T d1ijqa1 171 LDLLSGRLYWVDSKLHSISSIDVNGGNRKTIL--EDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDVNLLAE 247 (266)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCSCEEEE--ECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCCCCEEEEC
T ss_pred eeccccEEEEecCCcCEEEEEECCCCCEEEEE--eCCCcccccEEEEEEC-CEEEEEECCCCeEEEEECCCCcceEEEEc
Confidence 99988888888757889999999765433211 1122233456677663 33444445677888888888776665554
Q ss_pred ccC
Q 014125 353 AAD 355 (430)
Q Consensus 353 ~~~ 355 (430)
...
T Consensus 248 ~~~ 250 (266)
T d1ijqa1 248 NLL 250 (266)
T ss_dssp SCS
T ss_pred CCC
Confidence 433
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.90 E-value=0.0062 Score=54.91 Aligned_cols=80 Identities=15% Similarity=0.109 Sum_probs=47.2
Q ss_pred eEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCee-EEEEcCCCc
Q 014125 289 YILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVN-GFSFHPFLP 367 (430)
Q Consensus 289 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~ 367 (430)
.|.-||+.+++........... .+. ..+-.|.+|++|+.||.++.+|.++|+.+.+++...+... =+.|..+|+
T Consensus 458 ~l~AiD~~tGk~~W~~~~~~p~-~gg----~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~Gk 532 (573)
T d1kb0a2 458 RLLAWDPVAQKAAWSVEHVSPW-NGG----TLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGR 532 (573)
T ss_dssp EEEEEETTTTEEEEEEEESSSC-CCC----EEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred cEEEeCCCCCceEeeecCCCCC-CCc----eEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCE
Confidence 4666676666544332211111 111 1222577888999999999999999999988764332111 144555776
Q ss_pred -EEEEee
Q 014125 368 -MAASSS 373 (430)
Q Consensus 368 -~l~s~~ 373 (430)
+++..+
T Consensus 533 QYv~v~~ 539 (573)
T d1kb0a2 533 QYVSVAV 539 (573)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 555444
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.83 E-value=0.0085 Score=53.86 Aligned_cols=161 Identities=13% Similarity=0.097 Sum_probs=88.4
Q ss_pred CceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE------cCCeEEEEEcCCCCCccccc
Q 014125 138 SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG------YNKSVRVFDVHRPGRDFEKY 211 (430)
Q Consensus 138 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~------~d~~i~v~d~~~~~~~~~~~ 211 (430)
+..++.++.||.+.-.|.++|+............. ..+++--.-.++..++.+ ..|.|+-+|+.++...++..
T Consensus 115 ~~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~-~~~t~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~ 193 (571)
T d2ad6a1 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVG-STLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAF 193 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGT-CBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred CCeEEEEeCCCcEEeeehhhhhhhccccccccccc-cceeecCeEeCCeEEEeeccccccccCcEEEEECCCCcEEEEEe
Confidence 34677888999999999999998776654321110 011111111245555533 26789999998876544321
Q ss_pred ccccC------------------------------CCCCCCcceEEEEEcCCCCceEEEecC----------------CC
Q 014125 212 STLKG------------------------------NKEGQAGIMSAIAFSPTHTGMLAIGSY----------------SQ 245 (430)
Q Consensus 212 ~~~~~------------------------------~~~~~~~~v~~~~~~~~~~~~l~~~~~----------------dg 245 (430)
..... ........-...++.+ ...++..+.. ..
T Consensus 194 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~-~~g~~y~~tg~~~p~~~~~r~g~n~~s~ 272 (571)
T d2ad6a1 194 ATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDP-KLNLFYYGSGNPAPWNETMRPGDNKWTM 272 (571)
T ss_dssp SSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTTT
T ss_pred ccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccch-hcCeeeeecccccCcccccccccccccc
Confidence 11000 0000001112345556 3334444433 34
Q ss_pred eEEEEEcCCceeeEEeeccccCe---------EEEEEccCCC---EEEEEecCCCeEEEEeCCCCceE
Q 014125 246 TSAIYREDNMELLYVLHGQEGGV---------THVQFSRDGN---YLYTGGRKDPYILCWDLRKAVQV 301 (430)
Q Consensus 246 ~v~~~d~~~~~~~~~~~~~~~~i---------~~~~~~~~~~---~l~~~~~~d~~i~i~d~~~~~~~ 301 (430)
.+...|.++++.+..++.....+ .......+++ .++..+ .+|.+.++|..+++.+
T Consensus 273 svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~-k~G~l~vlDr~tG~~i 339 (571)
T d2ad6a1 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHID-RNGILYTLNRENGNLI 339 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEEC-TTSEEEEEETTTCCEE
T ss_pred ceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeecc-ccceEEEEecCCCcEe
Confidence 67888999999887776432221 1122222443 345566 8999999999888654
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=97.79 E-value=0.0069 Score=50.37 Aligned_cols=197 Identities=11% Similarity=0.065 Sum_probs=102.4
Q ss_pred eeEEEECcCCceEEEecC------------CCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccc
Q 014125 63 LKGIKWSPDGSSFLTSSE------------DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH 130 (430)
Q Consensus 63 v~~~~~sp~~~~l~s~~~------------dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 130 (430)
--.|...|+|..+++++. .|.|.++|+.+...... .+... +.......|.|+
T Consensus 37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~---------------~l~~~-~~~~~~~~f~Ph 100 (340)
T d1v04a_ 37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVS---------------ELEII-GNTLDISSFNPH 100 (340)
T ss_dssp CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEE---------------ECEEE-CSSSCGGGCCEE
T ss_pred cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcce---------------EEEec-CCCCCCcceecc
Confidence 346888999987777643 38888888875432110 00000 011112223333
Q ss_pred cCcc--CCCCc-eEEEE---eCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEc----C-------
Q 014125 131 MSAS--DPTSC-VFAST---TRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGY----N------- 193 (430)
Q Consensus 131 ~~~~--~~~~~-~l~~~---~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----d------- 193 (430)
...+ .+++. +|++. ....+|.+|++........+...-..........+++..++.++++-. +
T Consensus 101 Gi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e 180 (340)
T d1v04a_ 101 GISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWE 180 (340)
T ss_dssp EEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHH
T ss_pred ceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhh
Confidence 2221 23443 34443 245568888876543222221111112223567888888888777621 1
Q ss_pred -----CeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEe--ecccc
Q 014125 194 -----KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVL--HGQEG 266 (430)
Q Consensus 194 -----~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~--~~~~~ 266 (430)
+...+|..+.... ... ...-...+.++++|++..++++-+..+.|+.|++......... ..-.+
T Consensus 181 ~~~~~~~g~v~~~~~~~~-----~~~----~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~ 251 (340)
T d1v04a_ 181 MHLGLAWSFVTYYSPNDV-----RVV----AEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDT 251 (340)
T ss_dssp HHTTCCCEEEEEECSSCE-----EEE----EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSS
T ss_pred HhhcCCceeEEEEcCCce-----EEE----cCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCC
Confidence 2333444332111 011 1112347889999977777788888999999998754322221 11234
Q ss_pred CeEEEEEccCCCEEEEEe
Q 014125 267 GVTHVQFSRDGNYLYTGG 284 (430)
Q Consensus 267 ~i~~~~~~~~~~~l~~~~ 284 (430)
..-.+.+.+.+..+.+++
T Consensus 252 ~pDNi~~d~~~g~lwva~ 269 (340)
T d1v04a_ 252 LVDNISVDPVTGDLWVGC 269 (340)
T ss_dssp EEEEEEECTTTCCEEEEE
T ss_pred CCCccEEecCCCEEEEEE
Confidence 567788876443444444
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.74 E-value=0.014 Score=52.47 Aligned_cols=81 Identities=15% Similarity=0.067 Sum_probs=50.1
Q ss_pred CeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCC-eeEEEEcCCC
Q 014125 288 PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADT-VNGFSFHPFL 366 (430)
Q Consensus 288 ~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~~ 366 (430)
|.|..+|+.+++.............+.+ +-.+.++++|+.||.++.+|.++|+.+.+++..... -.-+.|..+|
T Consensus 444 G~l~AiD~~TG~~~W~~~~~~~~~~g~l-----~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dG 518 (571)
T d2ad6a1 444 GQIRAFDLTTGKAKWTKWEKFAAWGGTL-----YTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKG 518 (571)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSBCE-----EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETT
T ss_pred ccEEEeccCCCceeeEcCCCCCCCccee-----EecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECC
Confidence 4577777777765544332222222221 123668888999999999999999999887643221 1124555577
Q ss_pred c-EEEEee
Q 014125 367 P-MAASSS 373 (430)
Q Consensus 367 ~-~l~s~~ 373 (430)
+ |++...
T Consensus 519 kqYi~v~~ 526 (571)
T d2ad6a1 519 KQYIGSMY 526 (571)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEe
Confidence 6 665544
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.58 E-value=0.024 Score=50.79 Aligned_cols=135 Identities=17% Similarity=0.206 Sum_probs=83.4
Q ss_pred ceEEEecCCCeEEEEEcCCceeeEEeeccc----------------------------------c--CeEEEEEccCCCE
Q 014125 236 GMLAIGSYSQTSAIYREDNMELLYVLHGQE----------------------------------G--GVTHVQFSRDGNY 279 (430)
Q Consensus 236 ~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~----------------------------------~--~i~~~~~~~~~~~ 279 (430)
..++.+..+|.++++|..+++++.....-. + .-...+++|+...
T Consensus 315 ~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~ 394 (560)
T d1kv9a2 315 KVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGL 394 (560)
T ss_dssp EEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTE
T ss_pred eeeeecCccceEEEEecCCCcccccccccccccccccChhhccccccccccccccceeeeeccccccccccccccCCCCe
Confidence 467778899999999999998765432100 0 0114566777766
Q ss_pred EEEEecC-----------------------------------CCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCC
Q 014125 280 LYTGGRK-----------------------------------DPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSG 324 (430)
Q Consensus 280 l~~~~~~-----------------------------------d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 324 (430)
+++.... .|.|.-+|+.+++.............. .+.-.+
T Consensus 395 ~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~~~~~~~gg-----~l~Tag 469 (560)
T d1kv9a2 395 VYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGG-----TLSTAG 469 (560)
T ss_dssp EEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCC-----EEEETT
T ss_pred eecccccccceeeccccccccccccccccCcccccCCCCcccccceEEEeCCCCeEeeeccCCCCCCCc-----eeEECC
Confidence 6654310 246778888888655443322111111 122246
Q ss_pred CEEEEEccCCcEEEEEcCCCCeecccccccCCe-eEEEEcCCCc-EEEEeeCC
Q 014125 325 RHLGTGGQDGLVHIYDLQTGKWISGFQAAADTV-NGFSFHPFLP-MAASSSGH 375 (430)
Q Consensus 325 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~-~l~s~~~d 375 (430)
.++++|+.||.++.+|.++|+.+.+++...... .-+.+..+|+ +|+..+..
T Consensus 470 glVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv~v~aG~ 522 (560)
T d1kv9a2 470 NLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMAGW 522 (560)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECC
T ss_pred CEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEEeCC
Confidence 788899999999999999999998887433211 1245556775 66655443
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.53 E-value=0.014 Score=49.43 Aligned_cols=246 Identities=13% Similarity=0.078 Sum_probs=113.8
Q ss_pred CCCceeEEEECcCCceEEEecCC-CeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCC
Q 014125 59 PNNFLKGIKWSPDGSSFLTSSED-KTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT 137 (430)
Q Consensus 59 h~~~v~~~~~sp~~~~l~s~~~d-g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 137 (430)
|.....+.++.++|++++.|+.+ ..+.+||..+........ ......-...+. .++
T Consensus 74 ~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~----------------~~~~r~~~~~~~-------~~d 130 (387)
T d1k3ia3 74 HDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPD----------------MQVARGYQSSAT-------MSD 130 (387)
T ss_dssp CCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCC----------------CSSCCSSCEEEE-------CTT
T ss_pred cccceeEEEEecCCcEEEeecCCCcceeEecCccCccccccc----------------ccccccccceee-------ecC
Confidence 33334567888999999998765 579999987653211000 000001111122 457
Q ss_pred CceEEEEeCC------CcEEEEeccCCceeeeeecccccc----c-----ccceEEEEECCCCcEEEEE-cCCeEEEEEc
Q 014125 138 SCVFASTTRD------HPIHLWDATTGLLRCTYRAYDAVD----E-----ITAAFSVAFNPTGTKIFAG-YNKSVRVFDV 201 (430)
Q Consensus 138 ~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~~~----~-----~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~ 201 (430)
+++++.|+.+ ..+.+||..+.+....-....... + ...-..+..-++++.+..+ ..+.+.+++.
T Consensus 131 G~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~ 210 (387)
T d1k3ia3 131 GRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTS 210 (387)
T ss_dssp SCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECS
T ss_pred CceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCc
Confidence 8888888753 368999998875432211110000 0 0001112233455555533 4555566665
Q ss_pred CCCCCcccccccccCC--CCCCCcceEEEEEcCCCCceEEEecCCC--------eEEEEEcCCc---e-eeEEee--ccc
Q 014125 202 HRPGRDFEKYSTLKGN--KEGQAGIMSAIAFSPTHTGMLAIGSYSQ--------TSAIYREDNM---E-LLYVLH--GQE 265 (430)
Q Consensus 202 ~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~dg--------~v~~~d~~~~---~-~~~~~~--~~~ 265 (430)
.... .......... .......-.++.+...++++++.|+... ...+.+.... . ...... ...
T Consensus 211 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 288 (387)
T d1k3ia3 211 GSGD--VKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFA 288 (387)
T ss_dssp TTCE--EEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSC
T ss_pred ccCc--EeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccc
Confidence 4421 1110000000 0011111223333333555666665321 2233332211 1 111111 011
Q ss_pred cCeEEEEEccCCCEEEEEecCC-----------CeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEcc
Q 014125 266 GGVTHVQFSRDGNYLYTGGRKD-----------PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQ 332 (430)
Q Consensus 266 ~~i~~~~~~~~~~~l~~~~~~d-----------~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 332 (430)
..-.+....++|+.++.++ .+ ..+.+||..+..- ..+.........-....+.+||+.++.|+.
T Consensus 289 r~~~~~~~~~dg~i~v~GG-~~~~~~~~~~~~~~~ve~Ydp~~~~W--~~~~~~~~~R~~Hs~a~l~~dG~v~v~GG~ 363 (387)
T d1k3ia3 289 RTFHTSVVLPDGSTFITGG-QRRGIPFEDSTPVFTPEIYVPEQDTF--YKQNPNSIVRVYHSISLLLPDGRVFNGGGG 363 (387)
T ss_dssp CBSCEEEECTTSCEEEECC-BSBCCTTCCCSBCCCCEEEEGGGTEE--EECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred cccceeeeccCCeEEEECC-cccCccCCCCcEeceEEEEECCCCeE--EECCCCCCcccceEEEEECCCCEEEEEeCC
Confidence 1223455568999888877 32 1477899876532 122111111111123446789999998884
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=97.51 E-value=0.018 Score=47.62 Aligned_cols=213 Identities=11% Similarity=0.166 Sum_probs=116.7
Q ss_pred CCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE-cC---CeEEEEEcCCCCCccc
Q 014125 135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YN---KSVRVFDVHRPGRDFE 209 (430)
Q Consensus 135 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d---~~i~v~d~~~~~~~~~ 209 (430)
.|+..+++...+.+-|.+||+. |+.+..+.... .....-...+.+......++ ++ .+ ..|.+|.+........
T Consensus 37 ~p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~~Gr-~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~ 114 (353)
T d1h6la_ 37 NPQNSKLITTNKKSGLAVYSLE-GKMLHSYHTGK-LNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ 114 (353)
T ss_dssp CGGGCEEEEEETTSCCEEEETT-CCEEEECCSSC-EEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE
T ss_pred CcCccEEEEEcCcCCEEEEcCC-CcEEEecccCC-cCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccc
Confidence 4566778877888779999985 77666654321 11111122233333333344 44 22 3688888865333222
Q ss_pred ccccccCCCCCCCcceEEEEE--cCCCCc-eEEEecCCCeEEEEEcC---Cc----eeeEEeeccccCeEEEEEccCCCE
Q 014125 210 KYSTLKGNKEGQAGIMSAIAF--SPTHTG-MLAIGSYSQTSAIYRED---NM----ELLYVLHGQEGGVTHVQFSRDGNY 279 (430)
Q Consensus 210 ~~~~~~~~~~~~~~~v~~~~~--~~~~~~-~l~~~~~dg~v~~~d~~---~~----~~~~~~~~~~~~i~~~~~~~~~~~ 279 (430)
...............+..+|+ +|..+. ++++...+|.+..|.+. .+ +.++.+. -...+..+.+.+....
T Consensus 115 ~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~EGCVvDde~~~ 193 (353)
T d1h6la_ 115 SITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQTEGMAADDEYGS 193 (353)
T ss_dssp ECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSCEEEEEEETTTTE
T ss_pred cccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-CCCccceEEEeCCCCc
Confidence 111111111111123555665 665444 45667778999888763 22 3344454 3457889999999899
Q ss_pred EEEEecCCCeEEEEeCCCCc--eEEEE-eecccCCccceEEEEEc--CC--CCEEEEEccCCcEEEEEcCCC-Ceecccc
Q 014125 280 LYTGGRKDPYILCWDLRKAV--QVVYK-LYRSSEHTNQRILFDIE--PS--GRHLGTGGQDGLVHIYDLQTG-KWISGFQ 351 (430)
Q Consensus 280 l~~~~~~d~~i~i~d~~~~~--~~~~~-~~~~~~~~~~v~~~~~~--~~--~~~l~~~~~dg~i~vwd~~~~-~~~~~~~ 351 (430)
|+.+- .+.-|..+++.... ..... ..........+-.+++- ++ |-+|++.-.+++..|||..+. +.+..|.
T Consensus 194 LyisE-E~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F~ 272 (353)
T d1h6la_ 194 LYIAE-EDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVADFQ 272 (353)
T ss_dssp EEEEE-TTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred EEEec-CccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccceEE
Confidence 99998 77777666664221 11111 11111234556666643 23 334555556788999998763 5555543
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.38 E-value=0.034 Score=47.92 Aligned_cols=255 Identities=11% Similarity=0.016 Sum_probs=128.0
Q ss_pred cCCCceeEEEECcCCceEEEe----cC-CCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccC
Q 014125 58 IPNNFLKGIKWSPDGSSFLTS----SE-DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS 132 (430)
Q Consensus 58 ~h~~~v~~~~~sp~~~~l~s~----~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 132 (430)
++.-.+...++|||++++|.+ |. -..+++.|+.+++.+... +. ......++|
T Consensus 122 ~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~-----------------i~-~~~~~~~~W----- 178 (430)
T d1qfma1 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV-----------------LE-RVKFSCMAW----- 178 (430)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEE-----------------EE-EECSCCEEE-----
T ss_pred cccceecceEecCCCCEEEEEeccccCchheeEEeccCcceecccc-----------------cc-cccccceEE-----
Confidence 444445677899999988843 22 246999999987532110 00 011245677
Q ss_pred ccCCCCceEEEEeCC----------------CcEEEEeccCCcee--eeeecccccccccceEEEEECCCCcEEEE--E-
Q 014125 133 ASDPTSCVFASTTRD----------------HPIHLWDATTGLLR--CTYRAYDAVDEITAAFSVAFNPTGTKIFA--G- 191 (430)
Q Consensus 133 ~~~~~~~~l~~~~~d----------------g~i~vwd~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~- 191 (430)
.+|+..|+....+ ..|..+.+.+.... ..+.... ....+..+..++++++++. .
T Consensus 179 --~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d---~~~~~~~~~~s~d~~~l~i~~~~ 253 (430)
T d1qfma1 179 --THDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPD---EPKWMGGAELSDDGRYVLLSIRE 253 (430)
T ss_dssp --CTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTT---CTTCEEEEEECTTSCEEEEEEEC
T ss_pred --cCCCCEEEEEEeccccCcccccccccCCcceEEEEECCCCcccccccccccc---CCceEEeeeccCCcceeeEEeec
Confidence 6677776654332 24777777665432 2222211 1124556778999998873 2
Q ss_pred -cCCe--EEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEec---CCCeEEEEEcCCcee--eEE-ee
Q 014125 192 -YNKS--VRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS---YSQTSAIYREDNMEL--LYV-LH 262 (430)
Q Consensus 192 -~d~~--i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~v~~~d~~~~~~--~~~-~~ 262 (430)
.+.. +.+.++.........................-+.. . +..+++... .++.|...++..... ... +.
T Consensus 254 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~ 331 (430)
T d1qfma1 254 GCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTN-E-GTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVP 331 (430)
T ss_dssp SSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEEE-E-TTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEEC
T ss_pred cCCccEEEEEeeCCCcccccccccceeEeecccccceEEEec-C-CceeecccCcccccceeEEecCCCCccccceEEec
Confidence 2333 44445543222111111111111111222222222 2 333444332 346677777665432 122 33
Q ss_pred ccccCeEEEEEccCCCEEEEEecCCC--eEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEcc----CCcE
Q 014125 263 GQEGGVTHVQFSRDGNYLYTGGRKDP--YILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQ----DGLV 336 (430)
Q Consensus 263 ~~~~~i~~~~~~~~~~~l~~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----dg~i 336 (430)
.+...+..-.+...+.+|+.....++ .|+++++.++..... . ......+..+...++...+...-. =.++
T Consensus 332 ~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~~~~~~~~~~~--~--~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~ 407 (430)
T d1qfma1 332 EHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKI--F--PLEVGSVVGYSGQKKDTEIFYQFTSFLSPGII 407 (430)
T ss_dssp CCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEE--E--CCCSSEEEEEECCTTCSEEEEEEECSSCCCEE
T ss_pred ccCcceeeeEEEEECCEEEEEEEcCCEeEEEEEECCCCcEEEe--c--CCCCceEeeccCCCCCCEEEEEEcCCCCCCeE
Confidence 34444554444455566766553454 588899887754322 1 122344555555555544332222 2678
Q ss_pred EEEEcCCCCe
Q 014125 337 HIYDLQTGKW 346 (430)
Q Consensus 337 ~vwd~~~~~~ 346 (430)
+-+|+.+++.
T Consensus 408 y~~Dl~t~~~ 417 (430)
T d1qfma1 408 YHCDLTKEEL 417 (430)
T ss_dssp EEEETTSSSC
T ss_pred EEEECCCCCc
Confidence 8899988764
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.30 E-value=0.054 Score=48.38 Aligned_cols=162 Identities=16% Similarity=0.178 Sum_probs=86.7
Q ss_pred CceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE------cCCeEEEEEcCCCCCccccc
Q 014125 138 SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG------YNKSVRVFDVHRPGRDFEKY 211 (430)
Q Consensus 138 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~------~d~~i~v~d~~~~~~~~~~~ 211 (430)
+..++.+..++.+.-.|..+|+.+............ .+...-.--++..++.+ ..|.|.-+|.+++...++..
T Consensus 117 ~~~v~~~~~~g~l~Alda~tG~~~w~~~~~~~~~~~-~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~ 195 (560)
T d1kv9a2 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPY-SITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY 195 (560)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSC-BCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CCeEEEEeCCCEEEEEECCCCcEEeccCccCcccce-eeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeee
Confidence 456888889999999999999988877654321110 11110011134444422 13678888888765544432
Q ss_pred ccccCCCC-----------------------CCCcceEEEEEcCCCCceEEEecC-------------------CCeEEE
Q 014125 212 STLKGNKE-----------------------GQAGIMSAIAFSPTHTGMLAIGSY-------------------SQTSAI 249 (430)
Q Consensus 212 ~~~~~~~~-----------------------~~~~~v~~~~~~~~~~~~l~~~~~-------------------dg~v~~ 249 (430)
........ .....-..+++.| ...++..+.. ...|.-
T Consensus 196 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~-~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivA 274 (560)
T d1kv9a2 196 TVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILA 274 (560)
T ss_dssp SSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEE
T ss_pred eccccccCCccccccccccccccccccccccCCCCccccccccc-ccCeeeecCCCCcccccccccccCCccccceeeEE
Confidence 11110000 0001122355666 3344443321 245777
Q ss_pred EEcCCceeeEEeeccccCeE---------EEEEccCCC---EEEEEecCCCeEEEEeCCCCceEE
Q 014125 250 YREDNMELLYVLHGQEGGVT---------HVQFSRDGN---YLYTGGRKDPYILCWDLRKAVQVV 302 (430)
Q Consensus 250 ~d~~~~~~~~~~~~~~~~i~---------~~~~~~~~~---~l~~~~~~d~~i~i~d~~~~~~~~ 302 (430)
.|.++++....++.....+. -+....+++ .++... .+|.+.++|..+++...
T Consensus 275 ld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~-k~G~~~~lDr~tG~~i~ 338 (560)
T d1kv9a2 275 IRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAP-KNGFFYVLDRTNGKLIS 338 (560)
T ss_dssp ECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECC-TTSEEEEEETTTCCEEE
T ss_pred ecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecC-ccceEEEEecCCCcccc
Confidence 89999988776654322221 122222332 455555 89999999998886543
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.23 E-value=0.066 Score=48.13 Aligned_cols=82 Identities=16% Similarity=0.100 Sum_probs=50.6
Q ss_pred CeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCC-eeEEEEcCCC
Q 014125 288 PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADT-VNGFSFHPFL 366 (430)
Q Consensus 288 ~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~~ 366 (430)
|.|.-||+.+++.............+.+ +-.|.+++.|+.||.++.+|.++|+.+.+++..... -.=+.|..+|
T Consensus 453 G~l~A~D~~TG~~~W~~~~~~~~~gg~l-----sTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dG 527 (596)
T d1w6sa_ 453 GQIKAYNAITGDYKWEKMERFAVWGGTM-----ATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKG 527 (596)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSBCE-----EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETT
T ss_pred ceEEEEeCCCCceecccCCCCCCcccee-----EecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECC
Confidence 4677778877765544332222222221 224678888999999999999999999888643221 1113445577
Q ss_pred c-EEEEeeC
Q 014125 367 P-MAASSSG 374 (430)
Q Consensus 367 ~-~l~s~~~ 374 (430)
+ |++....
T Consensus 528 kQYvav~~G 536 (596)
T d1w6sa_ 528 TQYVAIYYG 536 (596)
T ss_dssp EEEEEEEEC
T ss_pred EEEEEEEec
Confidence 6 5665443
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=96.85 E-value=0.15 Score=45.71 Aligned_cols=161 Identities=16% Similarity=0.131 Sum_probs=89.8
Q ss_pred CceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE------cCCeEEEEEcCCCCCccccc
Q 014125 138 SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG------YNKSVRVFDVHRPGRDFEKY 211 (430)
Q Consensus 138 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~------~d~~i~v~d~~~~~~~~~~~ 211 (430)
..+++.++.|+.|.-.|.++|+.+..+........ ..+++--.--++..++.. ..|.|+-+|..++...++..
T Consensus 121 ~~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~-~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~ 199 (596)
T d1w6sa_ 121 PALILKTQLDGNVAALNAETGETVWKVENSDIKVG-STLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY 199 (596)
T ss_dssp CCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGT-CBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred ceEEEEEeCCCCeEeeccccCceeccccccccccc-cccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEee
Confidence 45788899999999999999999888754321110 011111111145555522 24889999998876654322
Q ss_pred cccc------------------------------CCCCCCCcceEEEEEcCCCCceEEEecC----------------CC
Q 014125 212 STLK------------------------------GNKEGQAGIMSAIAFSPTHTGMLAIGSY----------------SQ 245 (430)
Q Consensus 212 ~~~~------------------------------~~~~~~~~~v~~~~~~~~~~~~l~~~~~----------------dg 245 (430)
.... ....+....-..+++.+ ...++..+.. ..
T Consensus 200 t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~-~~~lvy~~tg~~~p~~~~~r~g~n~ys~ 278 (596)
T d1w6sa_ 200 ATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDP-GTNLIYFGTGNPAPWNETMRPGDNKWTM 278 (596)
T ss_dssp SSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTSS
T ss_pred ccCCccccccccccccccccccccccccccCCCCceecCCCcccccccccc-CCCeeecccccccccccccccccccccc
Confidence 1100 00001111223445666 4445544432 34
Q ss_pred eEEEEEcCCceeeEEeecccc---------CeEEEEE-ccCCC---EEEEEecCCCeEEEEeCCCCceE
Q 014125 246 TSAIYREDNMELLYVLHGQEG---------GVTHVQF-SRDGN---YLYTGGRKDPYILCWDLRKAVQV 301 (430)
Q Consensus 246 ~v~~~d~~~~~~~~~~~~~~~---------~i~~~~~-~~~~~---~l~~~~~~d~~i~i~d~~~~~~~ 301 (430)
.|.-.|.++++.+..++.... ...-+.. ..+|+ .++... .+|.+.++|..+++..
T Consensus 279 sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~-k~G~~~vlDr~tG~~i 346 (596)
T d1w6sa_ 279 TIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPD-RNGIVYTLDRTDGALV 346 (596)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEEC-TTSEEEEEETTTCCEE
T ss_pred cccccccccccccccccceeccccCCccccceeeeeccccccccccceeccc-cccceeeecCCCCcee
Confidence 577889999998877653221 1111111 23443 456666 8999999999888654
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=96.50 E-value=0.16 Score=41.67 Aligned_cols=190 Identities=15% Similarity=0.185 Sum_probs=101.6
Q ss_pred CCCcEEEEE-cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcC----C-CCceEEEecC--C--CeEEEEEc
Q 014125 183 PTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSP----T-HTGMLAIGSY--S--QTSAIYRE 252 (430)
Q Consensus 183 ~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~-~~~~l~~~~~--d--g~v~~~d~ 252 (430)
|+..++++. ..+-|++||+.. ..... . ..+.+..+..-. . ....+++++. + .+|.+|.+
T Consensus 38 p~~SlI~gTdK~~Gl~vYdL~G--~~l~~---~------~~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~i 106 (353)
T d1h6la_ 38 PQNSKLITTNKKSGLAVYSLEG--KMLHS---Y------HTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAI 106 (353)
T ss_dssp GGGCEEEEEETTSCCEEEETTC--CEEEE---C------CSSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEE
T ss_pred cCccEEEEEcCcCCEEEEcCCC--cEEEe---c------ccCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEe
Confidence 344566644 556699999963 21111 1 112344443321 1 2223444442 2 35777776
Q ss_pred CC-ceeeEEeecc-------ccCeEEEEE--ccC-CCE-EEEEecCCCeEEEEeCCCCc--eEEEEeecccCCccceEEE
Q 014125 253 DN-MELLYVLHGQ-------EGGVTHVQF--SRD-GNY-LYTGGRKDPYILCWDLRKAV--QVVYKLYRSSEHTNQRILF 318 (430)
Q Consensus 253 ~~-~~~~~~~~~~-------~~~i~~~~~--~~~-~~~-l~~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~~~~~v~~~ 318 (430)
.. ...+..+... ...+..+|+ ++. |.. +++.. .+|.+..|.+.... .......+.......+..|
T Consensus 107 d~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~-k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGC 185 (353)
T d1h6la_ 107 DGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTG-KEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGM 185 (353)
T ss_dssp ETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEEC-SSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEE
T ss_pred cCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEc-CCceEEEEEEEcCCCCceeeEeeeccCCCCccceE
Confidence 42 2223322211 124677777 654 544 45555 89999888763221 1222222223345678899
Q ss_pred EEcCCCCEEEEEccCCcEEEEEcCCC-----Ceecccc--cccCCeeEEEEcC--C--CcEEEEeeCCceeeecCCC
Q 014125 319 DIEPSGRHLGTGGQDGLVHIYDLQTG-----KWISGFQ--AAADTVNGFSFHP--F--LPMAASSSGHRRFPVDDFE 384 (430)
Q Consensus 319 ~~~~~~~~l~~~~~dg~i~vwd~~~~-----~~~~~~~--~~~~~v~~~~~~~--~--~~~l~s~~~d~~~~vw~~~ 384 (430)
.+++....|+.+-++..|+.+++... ..+.... .....+..|+.-. + |-+|+|.-.++++.|++..
T Consensus 186 VvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~ 262 (353)
T d1h6la_ 186 AADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQ 262 (353)
T ss_dssp EEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred EEeCCCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecC
Confidence 99999899999988877766665421 2222221 1345677777543 2 3355555557888888654
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.44 E-value=0.062 Score=46.19 Aligned_cols=108 Identities=12% Similarity=-0.004 Sum_probs=68.6
Q ss_pred CCcceEEEEEcCCCCceEEEecCCC----eEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCC---------
Q 014125 221 QAGIMSAIAFSPTHTGMLAIGSYSQ----TSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKD--------- 287 (430)
Q Consensus 221 ~~~~v~~~~~~~~~~~~l~~~~~dg----~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d--------- 287 (430)
+.-.+..++++|++..++++-+.+| .++++|+.+++.+...- .......++|+++++.|+... .+
T Consensus 123 ~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i-~~~~~~~~~W~~D~~~~~Y~~-~~~~~~~~~~~ 200 (430)
T d1qfma1 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ERVKFSCMAWTHDGKGMFYNA-YPQQDGKSDGT 200 (430)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EEECSCCEEECTTSSEEEEEE-CCCCSSCCSSS
T ss_pred ccceecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccc-ccccccceEEcCCCCEEEEEE-eccccCccccc
Confidence 3344566788996655554544444 69999999998764322 122236789999999887654 22
Q ss_pred -------CeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEE
Q 014125 288 -------PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTG 330 (430)
Q Consensus 288 -------~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 330 (430)
..|..+.+.+....-..++........+..+..++++++++..
T Consensus 201 ~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~ 250 (430)
T d1qfma1 201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLS 250 (430)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEE
T ss_pred ccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEE
Confidence 3688888877644333333333334456778889999987643
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.29 E-value=0.11 Score=46.49 Aligned_cols=82 Identities=15% Similarity=0.144 Sum_probs=54.3
Q ss_pred CCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCC
Q 014125 244 SQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPS 323 (430)
Q Consensus 244 dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 323 (430)
.|.|.-+|+.+++.+.....+ .++.+-..+..+..+++++ .||.++.+|.++++.+.........+..+ +.|..+
T Consensus 465 ~G~l~AiD~~TG~i~W~~~~~-~p~~~g~lstagglVF~Gt-~dg~l~A~Da~TGe~LW~~~~~~~~~~~P---~ty~~~ 539 (582)
T d1flga_ 465 VGSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGT-GDGYFKAFDAKSGKELWKFQTGSGIVSPP---ITWEQD 539 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEEC-TTSEEEEEETTTCCEEEEEECSSCCCSCC---EEEEET
T ss_pred CCeEEEEcCCCCcEEeecCCC-CCCccceeEEcCCeEEEeC-CCCeEEEEECCCCcEeEEEECCCCccccC---EEEEEC
Confidence 477888999999988877633 3333323345677888887 99999999999998776544332333333 445567
Q ss_pred CC-EEEEE
Q 014125 324 GR-HLGTG 330 (430)
Q Consensus 324 ~~-~l~~~ 330 (430)
|+ |++..
T Consensus 540 G~qYv~i~ 547 (582)
T d1flga_ 540 GEQYLGVT 547 (582)
T ss_dssp TEEEEEEE
T ss_pred CEEEEEEE
Confidence 74 55543
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.16 E-value=0.21 Score=39.48 Aligned_cols=230 Identities=13% Similarity=0.139 Sum_probs=134.2
Q ss_pred EEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEE
Q 014125 65 GIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFAST 144 (430)
Q Consensus 65 ~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 144 (430)
+.-.+|..+.||.-+ ..++.|+|+++.+.... ....++|.--.|. +.+.|+-.
T Consensus 67 sAIMhP~~~IiALra-g~~LQiFnletK~klks------------------~~~~e~VvfWkWi--------s~~~L~lV 119 (327)
T d1utca2 67 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKA------------------HTMTDDVTFWKWI--------SLNTVALV 119 (327)
T ss_dssp EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEE------------------EECSSCCCEEEES--------SSSEEEEE
T ss_pred hhhcCCCCcEEEEec-CCeEEEEehhHhhhhce------------------EEcCCCcEEEEec--------CCCEEEEE
Confidence 344678777777655 45899999987643221 1122466666673 22344444
Q ss_pred eCCCcEEEEeccC-CceeeeeecccccccccceEEEEECCCCcEEE-EE---cC----CeEEEEEcCCCCCccccccccc
Q 014125 145 TRDHPIHLWDATT-GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG---YN----KSVRVFDVHRPGRDFEKYSTLK 215 (430)
Q Consensus 145 ~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~---~d----~~i~v~d~~~~~~~~~~~~~~~ 215 (430)
+. ..|+-|+++. ..+...+..+.... ...|..-..+++.++++ +| .+ |.+.+|..+.. ..
T Consensus 120 T~-taVYHW~~~g~s~P~k~fdR~~~L~-~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~---------~s 188 (327)
T d1utca2 120 TD-NAVYHWSMEGESQPVKMFDRHSSLA-GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK---------VS 188 (327)
T ss_dssp CS-SEEEEEESSSSCCCEEEEECCGGGT-TCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT---------EE
T ss_pred cC-CceEEEcccCCCCchhhhhhccccc-CceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC---------cC
Confidence 43 4599999954 34666676665543 35788888999999887 43 23 67888988753 22
Q ss_pred CCCCCCCcceEEEEEcCC--CCceEEEe---cCCCeEEEEEcCCce---e-----eEEee----ccccCeEEEEEccCCC
Q 014125 216 GNKEGQAGIMSAIAFSPT--HTGMLAIG---SYSQTSAIYREDNME---L-----LYVLH----GQEGGVTHVQFSRDGN 278 (430)
Q Consensus 216 ~~~~~~~~~v~~~~~~~~--~~~~l~~~---~~dg~v~~~d~~~~~---~-----~~~~~----~~~~~i~~~~~~~~~~ 278 (430)
+.+++|......+.+.-+ ...+++.+ ...+++++.++.... . ...+. ...+-..++..++...
T Consensus 189 Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kyg 268 (327)
T d1utca2 189 QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD 268 (327)
T ss_dssp EEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTT
T ss_pred ccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCC
Confidence 223566555555444321 12233332 234678888876421 1 11111 1123456788888888
Q ss_pred EEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEE
Q 014125 279 YLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVH 337 (430)
Q Consensus 279 ~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 337 (430)
.++..+ .-|.|++||+.++...... .-....|...+-+.+..-+++...+|.|.
T Consensus 269 iiyviT-K~G~i~lyDleTgt~i~~n----RIs~~~iF~~a~~~~~~Gi~~VNr~GqVl 322 (327)
T d1utca2 269 VVFLIT-KYGYIHLYDLETGTCIYMN----RISGETIFVTAPHEATAGIIGVNRKGQVL 322 (327)
T ss_dssp EEEEEE-TTSEEEEEETTTCCEEEEE----ECCSSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred EEEEEe-cCcEEEEEEcccccEEEEe----ecCCCceEEeccCCCCceEEEECCCCeEE
Confidence 888888 8999999999998654322 22333444333333333444444666554
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=96.13 E-value=0.27 Score=40.37 Aligned_cols=188 Identities=12% Similarity=0.067 Sum_probs=99.8
Q ss_pred CCCCceEEEEeC------------CCcEEEEeccCCceee-eeecccc--cccccceEEEEE--CCCCcE-EE-EE---c
Q 014125 135 DPTSCVFASTTR------------DHPIHLWDATTGLLRC-TYRAYDA--VDEITAAFSVAF--NPTGTK-IF-AG---Y 192 (430)
Q Consensus 135 ~~~~~~l~~~~~------------dg~i~vwd~~~~~~~~-~~~~~~~--~~~~~~v~~~~~--~~~~~~-l~-~~---~ 192 (430)
.|+|..+++++. .|.|.++|+.+.+... .+..... ....-....+.. .++++. |+ +. .
T Consensus 43 ~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH~~~ 122 (340)
T d1v04a_ 43 LPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGS 122 (340)
T ss_dssp CTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEECSTT
T ss_pred CCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEeccCC
Confidence 556666655532 4889999987654322 1111110 000012233332 455653 32 32 4
Q ss_pred CCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecC---------------CCeEEEEEcCCcee
Q 014125 193 NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY---------------SQTSAIYREDNMEL 257 (430)
Q Consensus 193 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---------------dg~v~~~d~~~~~~ 257 (430)
..+|.+|++...+..+....... .........+++.. ++.++++-.. -+...+|..+.++.
T Consensus 123 ~~~ieif~~~~~~~~l~~~~~v~---~~~~~~pNDv~~~~-~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~ 198 (340)
T d1v04a_ 123 SSTVEVFKFQEEEKSLLHLKTIR---HKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDV 198 (340)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEC---CTTCSSEEEEEEEE-TTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCE
T ss_pred CceeEEEEEeCCCCeEEEEeecC---CccccCccceEEec-CCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCce
Confidence 56788888876544333222222 12234467888877 4557776211 12233333333333
Q ss_pred eEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCC-CCEEEE
Q 014125 258 LYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPS-GRHLGT 329 (430)
Q Consensus 258 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~ 329 (430)
..... .-...+.|+++|++++|+++....+.|+.|++........... ..-....-.+.+.+. |.+.+.
T Consensus 199 ~~~~~-~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~--~~l~~~pDNi~~d~~~g~lwva 268 (340)
T d1v04a_ 199 RVVAE-GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRV--LSFDTLVDNISVDPVTGDLWVG 268 (340)
T ss_dssp EEEEE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEE--EECSSEEEEEEECTTTCCEEEE
T ss_pred EEEcC-CCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEE--ecCCCCCCccEEecCCCEEEEE
Confidence 22222 3356799999999999998887889999999986543322211 123344556777764 444433
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=96.10 E-value=0.14 Score=45.76 Aligned_cols=81 Identities=7% Similarity=0.062 Sum_probs=52.6
Q ss_pred CeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCC
Q 014125 245 QTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSG 324 (430)
Q Consensus 245 g~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 324 (430)
|.+.-||+.+++.+...... .+...-..+-.+..+++++ .||.++.+|.++++.+............+ +.|..+|
T Consensus 457 G~l~AiD~~tGk~~W~~~~~-~p~~gg~lstagglVF~G~-~dg~l~A~Da~TGe~LW~~~~~~~~~~~P---~ty~~~G 531 (573)
T d1kb0a2 457 GRLLAWDPVAQKAAWSVEHV-SPWNGGTLTTAGNVVFQGT-ADGRLVAYHAATGEKLWEAPTGTGVVAAP---STYMVDG 531 (573)
T ss_dssp EEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEEC-TTSEEEEEETTTCCEEEEEECSSCCCSCC---EEEEETT
T ss_pred ccEEEeCCCCCceEeeecCC-CCCCCceEEEcCCEEEEEC-CCCeEEEEECCCCcEeEEEECCCCccccC---EEEEECC
Confidence 67889999999988877632 2222222334677888888 99999999999998775444332333333 3344467
Q ss_pred C-EEEEE
Q 014125 325 R-HLGTG 330 (430)
Q Consensus 325 ~-~l~~~ 330 (430)
+ ||+..
T Consensus 532 kQYv~v~ 538 (573)
T d1kb0a2 532 RQYVSVA 538 (573)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 5 54443
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.10 E-value=0.44 Score=42.48 Aligned_cols=81 Identities=16% Similarity=0.115 Sum_probs=50.8
Q ss_pred CeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCe-eEEEEcCCC
Q 014125 288 PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTV-NGFSFHPFL 366 (430)
Q Consensus 288 ~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v-~~~~~~~~~ 366 (430)
|.|.-+|+.+++............ +.+ ++..|.++++|+.||.++.+|.++|+.+.+++...... .-+.+..+|
T Consensus 466 G~l~AiD~~TG~i~W~~~~~~p~~-~g~----lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G 540 (582)
T d1flga_ 466 GSLRAMDPVSGKVVWEHKEHLPLW-AGV----LATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDG 540 (582)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCC-SCC----EEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETT
T ss_pred CeEEEEcCCCCcEEeecCCCCCCc-cce----eEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECC
Confidence 567777888776554333221111 111 22357788899999999999999999998887433211 125666788
Q ss_pred c-EEEEee
Q 014125 367 P-MAASSS 373 (430)
Q Consensus 367 ~-~l~s~~ 373 (430)
+ +++...
T Consensus 541 ~qYv~i~a 548 (582)
T d1flga_ 541 EQYLGVTV 548 (582)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEe
Confidence 5 555443
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=94.97 E-value=0.46 Score=35.24 Aligned_cols=162 Identities=13% Similarity=0.150 Sum_probs=76.6
Q ss_pred ceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccCC---CCCCCcceEEEEEcCCCCceEEEecC-CCeEEEE
Q 014125 175 AAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGN---KEGQAGIMSAIAFSPTHTGMLAIGSY-SQTSAIY 250 (430)
Q Consensus 175 ~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~v~~~ 250 (430)
.|.+++.....-.+.++......+|-++.++- +....+... ..-....|..+.+-..+..-++++.- .|.++++
T Consensus 105 RI~S~~yddk~vvF~Gased~~~LYviegGkl--rkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lri~ 182 (313)
T d2hu7a1 105 RILSGVDTGEAVVFTGATEDRVALYALDGGGL--RELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVF 182 (313)
T ss_dssp EEEEEEECSSCEEEEEECSSCEEEEEEETTEE--EEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEEEEE
T ss_pred EEEEeeecCceEEEecccCCceEEEEEeCCce--eeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCEEEe
Confidence 45666664322222244666677777765321 111111000 00011223334333213333444443 5666666
Q ss_pred EcCCceeeEEeeccccCeEEEEEccCCCEEEEEecC--CCeEEEEeCCCCceEEEEeecc---cCCccceEEEEEcCCCC
Q 014125 251 REDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRK--DPYILCWDLRKAVQVVYKLYRS---SEHTNQRILFDIEPSGR 325 (430)
Q Consensus 251 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~--d~~i~i~d~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~ 325 (430)
+... +.++.....+..+. ++.-.. .....-+|++++.-....+-.. .-....|+-+-+.|+++
T Consensus 183 tpke-----------GS~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~Pdd~ 250 (313)
T d2hu7a1 183 DSGE-----------GSFSSASISPGMKV-TAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGR 250 (313)
T ss_dssp CCSS-----------EEEEEEEECTTSCE-EEEEEESSCEEEEEECTTTCCEEECCCSSCHHHHHCCSEEEEEEECTTSC
T ss_pred cCCC-----------CcccceeEccCcee-eeccCCCCceEEEEEecccCceeeeecCcccceeecceEEEeeeeCCCCc
Confidence 5544 44455555554443 222211 1122244776553221111000 11234456677999999
Q ss_pred EEEEEccCCcEEEEEcCCCCeeccccc
Q 014125 326 HLGTGGQDGLVHIYDLQTGKWISGFQA 352 (430)
Q Consensus 326 ~l~~~~~dg~i~vwd~~~~~~~~~~~~ 352 (430)
+++.+-.||.-.++. +|+.+...++
T Consensus 251 L~iiakrdG~s~lF~--nGk~in~p~G 275 (313)
T d2hu7a1 251 LAVVARREGRSAVFI--DGERVEAPQG 275 (313)
T ss_dssp EEEEEEETTEEEEEE--TTEEECCCSS
T ss_pred EEEEEecCCchheee--cceEecCCCC
Confidence 999999999999886 4666655443
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.17 E-value=1.2 Score=36.71 Aligned_cols=183 Identities=8% Similarity=-0.015 Sum_probs=102.6
Q ss_pred ceEEEEECCCCcEEEEEcCCeEEEEEcCC---------CCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCC
Q 014125 175 AAFSVAFNPTGTKIFAGYNKSVRVFDVHR---------PGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ 245 (430)
Q Consensus 175 ~v~~~~~~~~~~~l~~~~d~~i~v~d~~~---------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 245 (430)
...-++.++...+++++....+.|..+.. ...... .. ..-..|..++|+-+ .+++. .++
T Consensus 38 ~~~LLAVsn~~GLl~aa~~~~l~V~~t~~l~~~~~~~~~~~~~~----~~----~~ip~v~~vafs~d---~l~v~-~~~ 105 (381)
T d1xipa_ 38 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFK----WE----KEIPDVIFVCFHGD---QVLVS-TRN 105 (381)
T ss_dssp CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCS----EE----EECTTEEEEEEETT---EEEEE-ESS
T ss_pred ccceEEEeCCCCEEEEECCCEEEEEEHHHHHHHhhccCCCCcce----ec----cCCCCeEEEEeeCC---EEEEE-eCC
Confidence 44567777777777766555677876432 000000 00 01124888999753 34443 456
Q ss_pred eEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEe-ecccCCccceEEEEEcCCC
Q 014125 246 TSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKL-YRSSEHTNQRILFDIEPSG 324 (430)
Q Consensus 246 ~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~ 324 (430)
.+..++...-........-..++.++.++|. .++... .++.+.++++.......... .....-...+.+++|++.|
T Consensus 106 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~-~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kg 182 (381)
T d1xipa_ 106 ALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILN-SVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRS 182 (381)
T ss_dssp EEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEE-TTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSC
T ss_pred CEEEEEeeccccccccccccccccceecCCc--eeEEEe-cCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCc
Confidence 7888887664443333334567888888875 455555 78999999998875332110 0001123567888888888
Q ss_pred CEEEEEccCCcEEEE-EcCCCCeecccccccCCeeEEEEcCCCcEEEEee
Q 014125 325 RHLGTGGQDGLVHIY-DLQTGKWISGFQAAADTVNGFSFHPFLPMAASSS 373 (430)
Q Consensus 325 ~~l~~~~~dg~i~vw-d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 373 (430)
..++++..++ ..+- ++.....+.........|.+|.|-.+..+++.-+
T Consensus 183 kq~v~~~g~~-~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy~ 231 (381)
T d1xipa_ 183 FQSFAWRNGE-MEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 231 (381)
T ss_dssp EEEEEEETTE-EEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred EEEEEeCCCc-eeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEEC
Confidence 8787764332 2211 2221111111112334678999987777776553
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.63 E-value=1.6 Score=36.05 Aligned_cols=173 Identities=8% Similarity=-0.009 Sum_probs=92.6
Q ss_pred CCCCceEEEEeCCCcEEEEeccCC-------ceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCc
Q 014125 135 DPTSCVFASTTRDHPIHLWDATTG-------LLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRD 207 (430)
Q Consensus 135 ~~~~~~l~~~~~dg~i~vwd~~~~-------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~ 207 (430)
++...+++.|+.++ +.|..+..- .....+... .....|..++|+.+ .+++..++.+..++...-...
T Consensus 45 sn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~---~~ip~v~~vafs~d--~l~v~~~~~l~~~~~~~l~~~ 118 (381)
T d1xipa_ 45 SNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWE---KEIPDVIFVCFHGD--QVLVSTRNALYSLDLEELSEF 118 (381)
T ss_dssp ETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEE---EECTTEEEEEEETT--EEEEEESSEEEEEESSSTTCE
T ss_pred eCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceec---cCCCCeEEEEeeCC--EEEEEeCCCEEEEEeeccccc
Confidence 44455777777776 666653210 000001100 11226788999644 577677788888887652211
Q ss_pred ccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEee-----ccccCeEEEEEccCCCEEEE
Q 014125 208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH-----GQEGGVTHVQFSRDGNYLYT 282 (430)
Q Consensus 208 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~ 282 (430)
. .. ..-..++..+.++| . .++....++.+.++++..++...... .-.+.+.+++|++.|+.+++
T Consensus 119 ~-~~-------~~~~~~~~~~~~~p-~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~ 187 (381)
T d1xipa_ 119 R-TV-------TSFEKPVFQLKNVN-N--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFA 187 (381)
T ss_dssp E-EE-------EECSSCEEEEEECS-S--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEE
T ss_pred c-cc-------ccccccccceecCC-c--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEE
Confidence 0 00 11124577888877 3 56677778999999998875432211 12356778888888877776
Q ss_pred EecCCCeEEEE-eCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEE
Q 014125 283 GGRKDPYILCW-DLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTG 330 (430)
Q Consensus 283 ~~~~d~~i~i~-d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 330 (430)
+. .+ ...+- ++.... .+.........+.++.|-.+..++++-
T Consensus 188 ~~-g~-~~q~k~~i~~~~----~~~~p~~~~~~v~sI~WL~~~~F~vvy 230 (381)
T d1xipa_ 188 WR-NG-EMEKQFEFSLPS----ELEELPVEEYSPLSVTILSPQDFLAVF 230 (381)
T ss_dssp EE-TT-EEEEEEEECCCH----HHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred eC-CC-ceeeccCCCCcc----ccCCCcCCCcceeEEEEecCceEEEEE
Confidence 64 22 22111 111110 001111234467788887665555433
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=92.24 E-value=2.9 Score=35.46 Aligned_cols=59 Identities=14% Similarity=0.221 Sum_probs=39.4
Q ss_pred ceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEE--ee------ccccCeEEEEEccC---CCEEEEE
Q 014125 224 IMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYV--LH------GQEGGVTHVQFSRD---GNYLYTG 283 (430)
Q Consensus 224 ~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~--~~------~~~~~i~~~~~~~~---~~~l~~~ 283 (430)
..++|+|.| ++.+|++--..|.|++++..++..... +. .-.+....|+|+|+ ..+++.+
T Consensus 28 ~P~~la~~p-dg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvs 97 (450)
T d1crua_ 28 KPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYIS 97 (450)
T ss_dssp SEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEE
T ss_pred CceEEEEeC-CCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEE
Confidence 467999999 556776665579999998777654322 11 11356789999985 3455543
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=88.46 E-value=6.4 Score=33.25 Aligned_cols=58 Identities=14% Similarity=0.343 Sum_probs=39.2
Q ss_pred CeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccc---cccccceEEEEECCC
Q 014125 120 ESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDA---VDEITAAFSVAFNPT 184 (430)
Q Consensus 120 ~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~ 184 (430)
..-++|+| .|++++|++--..|.|++++..+++.......... .........|+++|+
T Consensus 27 ~~P~~la~-------~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 27 NKPHALLW-------GPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (450)
T ss_dssp SSEEEEEE-------CTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred CCceEEEE-------eCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence 45668888 67898888776689999999888765443332211 112336778999985
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.18 E-value=4.6 Score=31.29 Aligned_cols=14 Identities=7% Similarity=0.185 Sum_probs=10.6
Q ss_pred cEEEEeccCCceee
Q 014125 149 PIHLWDATTGLLRC 162 (430)
Q Consensus 149 ~i~vwd~~~~~~~~ 162 (430)
.+.+||+.+++...
T Consensus 20 ~~~~yd~~t~~W~~ 33 (288)
T d1zgka1 20 YLEAYNPSNGTWLR 33 (288)
T ss_dssp CEEEEETTTTEEEE
T ss_pred eEEEEECCCCeEEE
Confidence 58899999886544
|