Citrus Sinensis ID: 014132

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430
MSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFEKLVEEGKIPPVKEVTPPQIPEDLNTAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKGIRVPGIGHRIKRGDNRDKRVELLQKFARTHFPSVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLYTK
cHHHHHHHHHHccccEEEEEEEcccccccccHHHHHHHHcccccccEEEEEEccccHHHHHHHHHHHcccccccEEEEEEccccccccccccccccccccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHcccccccccEEEEEccccccccccccccccHHHcccccHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHccccHHHHHHHcccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHcccccccHHHHHHHHHHcccccEEEEcccccHHHHHHHHHHccccccccccccccccc
ccHHHHHHHHHccccEEEEEEEccccccccHHHHHHHHHHcccccEEEEEEEccccHHHHHHHHHHHcccccccEEEEEEEEccccccccEEEcccccEccccccHHHHHHHHHHHcccEccccHHHHHHHHHHHHHHHHHcccEEcccccccccccccHHHHHHHccccccccEEEEccccccccHHEccccHHHHHHcccccHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHccccccccccEEEccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccEEEEccHHHHHHHHHHHHHcccccHHHHHHHHHHccHcEHEEEcHHHHHHHHHHHHHHHcccccccccHHEEEcc
MSNELYNTIARVTDGIYegiaiggdvfpgstlsdhilrfnnipQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAWVSGTCARLfksevqfghagaksggemESAQAKNQALRdagavvptsYEAFESAIKETFEKLVeegkippvkevtppqipedlntaiksgkvrapthiistisddrgeepcyagvpmssiveqgygvgdvISLLWFKRSLPRYCTQFIEICIMLCadhgpcvsgahntiVTARAGKDLVSSLVSGLltigprfggaiDDAARYFKDAYDRGLSAYEFVESMKkkgirvpgighrikrgdnRDKRVELLQKFARthfpsvkymEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLagsgmfskqEIDEIVEIGYLNGLFVLARSIglightfdqkrlkqplyrhpwedvlytk
MSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEAlkqgkvnkpVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFEKLVEEgkippvkevtppqipEDLNtaiksgkvrapthiistisddrgeePCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDRGLSAYEFVEsmkkkgirvpgighrikrgdnrdkRVELLQKfarthfpsvkyMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIGLIGHTfdqkrlkqplyrhpwedvlytk
MSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFEKLVEEGKIPPVKEVTPPQIPEDLNTAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKGIRVPGIGHRIKRGDNRDKRVELLQKFARTHFPSVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLYTK
****LYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAWVSGTCARLFKSEVQFG**************************V*TSYEAFESAIKETF************************************THIISTIS***GEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKGIRVPGIGHRIKRGDNRDKRVELLQKFARTHFPSVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLY**
MSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKS**E**SAQAKNQALRDAGAVVPTSYEAFESAIKETFEKL*********************NTAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKGIRVPGIGHRIKRGDNRDKRVELLQKFARTHFPSVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLYTK
MSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAWVSGTCARLFKSEVQFG************************AVVPTSYEAFESAIKETFEKLVEEGKIPPVKEVTPPQIPEDLNTAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKGIRVPGIGHRIKRGDNRDKRVELLQKFARTHFPSVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLYTK
*SNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFEKLVEEGKIPPVKEVTPPQIPEDLNTAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKGIRVPGIGHRIKRGDNRDKRVELLQKFARTHFPSVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLYTK
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oooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiii
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MSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFEKLVEEGKIPPVKEVTPPQIPEDLNTAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKGIRVPGIGHRIKRGDNRDKRVELLQKFARTHFPSVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLYTK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query430 2.2.26 [Sep-21-2011]
Q93VT8608 ATP-citrate synthase beta yes no 1.0 0.707 0.937 0.0
Q9FGX1608 ATP-citrate synthase beta yes no 1.0 0.707 0.937 0.0
Q9C522608 ATP-citrate synthase beta yes no 1.0 0.707 0.930 0.0
Q54YA0622 Probable ATP-citrate synt yes no 0.995 0.688 0.663 1e-173
P166381100 ATP-citrate synthase OS=R yes no 0.995 0.389 0.553 1e-145
Q91V921091 ATP-citrate synthase OS=M yes no 0.995 0.392 0.553 1e-145
Q9P7W3615 Probable ATP-citrate synt yes no 0.995 0.695 0.563 1e-145
P533961101 ATP-citrate synthase OS=H yes no 0.995 0.388 0.546 1e-144
Q2TCH31101 ATP-citrate synthase OS=O N/A no 0.995 0.388 0.546 1e-143
O93988674 ATP-citrate synthase subu N/A no 0.995 0.635 0.546 1e-143
>sp|Q93VT8|ACLB1_ORYSJ ATP-citrate synthase beta chain protein 1 OS=Oryza sativa subsp. japonica GN=ACLB-1 PE=2 SV=1 Back     alignment and function desciption
 Score =  842 bits (2176), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/430 (93%), Positives = 418/430 (97%)

Query: 1   MSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEY 60
           MSNE+YNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGG+DEY
Sbjct: 179 MSNEMYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGKDEY 238

Query: 61  SLVEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAV 120
           SLVEALKQGKV KPVVAWVSGTCARLFKSEVQFGHAGAKSGGE+ESAQAKNQAL+DAGAV
Sbjct: 239 SLVEALKQGKVQKPVVAWVSGTCARLFKSEVQFGHAGAKSGGELESAQAKNQALKDAGAV 298

Query: 121 VPTSYEAFESAIKETFEKLVEEGKIPPVKEVTPPQIPEDLNTAIKSGKVRAPTHIISTIS 180
           VPTSYEA E+AIKETFEKLVE+GKI PV E+TPP IPEDL TAIKSGKVRAPTHIISTIS
Sbjct: 299 VPTSYEALETAIKETFEKLVEDGKISPVTEITPPPIPEDLKTAIKSGKVRAPTHIISTIS 358

Query: 181 DDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVS 240
           DDRGEEPCYAGVPMS+I+EQGYGVGDVISLLWFKRSLPRYCTQFIE+CIMLCADHGPCVS
Sbjct: 359 DDRGEEPCYAGVPMSTIIEQGYGVGDVISLLWFKRSLPRYCTQFIEMCIMLCADHGPCVS 418

Query: 241 GAHNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKK 300
           GAHN+IVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDR L+ YEFVE MKK
Sbjct: 419 GAHNSIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDRNLTPYEFVEGMKK 478

Query: 301 KGIRVPGIGHRIKRGDNRDKRVELLQKFARTHFPSVKYMEYAVQVETYTLSKANNLVLNV 360
           KGIRVPGIGHRIK  DNRDKRV+LLQK+A THFPSVKYMEYAVQVETYTLSKANNLVLNV
Sbjct: 479 KGIRVPGIGHRIKSRDNRDKRVQLLQKYAHTHFPSVKYMEYAVQVETYTLSKANNLVLNV 538

Query: 361 DGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYR 420
           DGAIGSLFLDLL+GSGMFSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYR
Sbjct: 539 DGAIGSLFLDLLSGSGMFSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYR 598

Query: 421 HPWEDVLYTK 430
           HPWEDVLYTK
Sbjct: 599 HPWEDVLYTK 608
ATP citrate-lyase is the primary enzyme responsible for the synthesis of cytosolic acetyl-CoA, used for the elongation of fatty acids and biosynthesis of isoprenoids, flavonoids and malonated derivatives. May supply substrate to the cytosolic acetyl-CoA carboxylase, which generates the malonyl-CoA used for the synthesis of a multitude of compounds, including very long chain fatty acids and flavonoids. In contrast to all known animal ACL enzymes having a homomeric structure, plant ACLs are composed of alpha and beta chains.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 2EC: .EC: 3EC: .EC: 3EC: .EC: 8
>sp|Q9FGX1|ACLB2_ARATH ATP-citrate synthase beta chain protein 2 OS=Arabidopsis thaliana GN=ACLB-2 PE=1 SV=1 Back     alignment and function description
>sp|Q9C522|ACLB1_ARATH ATP-citrate synthase beta chain protein 1 OS=Arabidopsis thaliana GN=ACLB-1 PE=2 SV=1 Back     alignment and function description
>sp|Q54YA0|ACLY_DICDI Probable ATP-citrate synthase OS=Dictyostelium discoideum GN=acly PE=1 SV=1 Back     alignment and function description
>sp|P16638|ACLY_RAT ATP-citrate synthase OS=Rattus norvegicus GN=Acly PE=1 SV=1 Back     alignment and function description
>sp|Q91V92|ACLY_MOUSE ATP-citrate synthase OS=Mus musculus GN=Acly PE=1 SV=1 Back     alignment and function description
>sp|Q9P7W3|ACL1_SCHPO Probable ATP-citrate synthase subunit 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1703.07 PE=1 SV=1 Back     alignment and function description
>sp|P53396|ACLY_HUMAN ATP-citrate synthase OS=Homo sapiens GN=ACLY PE=1 SV=3 Back     alignment and function description
>sp|Q2TCH3|ACLY_SHEEP ATP-citrate synthase OS=Ovis aries GN=ACLY PE=2 SV=1 Back     alignment and function description
>sp|O93988|ACL1_SORMK ATP-citrate synthase subunit 1 OS=Sordaria macrospora (strain ATCC MYA-333 / DSM 997 / K(L3346) / K-hell) GN=ACL1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query430
225431960 608 PREDICTED: ATP-citrate synthase beta cha 1.0 0.707 0.960 0.0
449462152 608 PREDICTED: ATP-citrate synthase beta cha 1.0 0.707 0.958 0.0
224101561 608 predicted protein [Populus trichocarpa] 1.0 0.707 0.960 0.0
449524892 609 PREDICTED: LOW QUALITY PROTEIN: ATP-citr 1.0 0.706 0.955 0.0
356529147 608 PREDICTED: ATP-citrate synthase beta cha 1.0 0.707 0.946 0.0
148872938 608 ATP citrate lyase alpha subunit [Glycyrr 1.0 0.707 0.948 0.0
356556001 608 PREDICTED: ATP-citrate synthase beta cha 1.0 0.707 0.941 0.0
297792199 608 ATP-citrate lyase B-2 [Arabidopsis lyrat 1.0 0.707 0.937 0.0
115436118 608 Os01g0300200 [Oryza sativa Japonica Grou 1.0 0.707 0.937 0.0
15239897 608 ATP citrate lyase subunit B 2 [Arabidops 1.0 0.707 0.937 0.0
>gi|225431960|ref|XP_002278181.1| PREDICTED: ATP-citrate synthase beta chain protein 2 [Vitis vinifera] gi|296083242|emb|CBI22878.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  862 bits (2227), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/430 (96%), Positives = 424/430 (98%)

Query: 1   MSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEY 60
           MSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDH+LRFNNIPQVKM+VVLGELGGRDEY
Sbjct: 179 MSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHVLRFNNIPQVKMVVVLGELGGRDEY 238

Query: 61  SLVEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAV 120
           SLVEALKQGK+NKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQAL +AGAV
Sbjct: 239 SLVEALKQGKINKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALSEAGAV 298

Query: 121 VPTSYEAFESAIKETFEKLVEEGKIPPVKEVTPPQIPEDLNTAIKSGKVRAPTHIISTIS 180
           VPTSYEAFE+AIKETFEKL EEGKI PVKEV PPQIPEDLNTAIKSGKVRAPTHIISTIS
Sbjct: 299 VPTSYEAFETAIKETFEKLHEEGKITPVKEVAPPQIPEDLNTAIKSGKVRAPTHIISTIS 358

Query: 181 DDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVS 240
           DDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCT FIEICIMLCADHGPCVS
Sbjct: 359 DDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTHFIEICIMLCADHGPCVS 418

Query: 241 GAHNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKK 300
           GAHNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDRGL+AYEFVE MKK
Sbjct: 419 GAHNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDRGLTAYEFVEDMKK 478

Query: 301 KGIRVPGIGHRIKRGDNRDKRVELLQKFARTHFPSVKYMEYAVQVETYTLSKANNLVLNV 360
           KGIRVPGIGHRIKRGDNRDKRVELLQ+FARTHFPSVKYMEYAV+VETYTLSK+NNLVLNV
Sbjct: 479 KGIRVPGIGHRIKRGDNRDKRVELLQRFARTHFPSVKYMEYAVEVETYTLSKSNNLVLNV 538

Query: 361 DGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYR 420
           DGAIGSLFLDLLAGSGMF+KQEIDEIV+IGYLNGLFVLARSIGLIGHTFDQKRLKQPLYR
Sbjct: 539 DGAIGSLFLDLLAGSGMFTKQEIDEIVQIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYR 598

Query: 421 HPWEDVLYTK 430
           HPWEDVLYTK
Sbjct: 599 HPWEDVLYTK 608

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449462152|ref|XP_004148805.1| PREDICTED: ATP-citrate synthase beta chain protein 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224101561|ref|XP_002312331.1| predicted protein [Populus trichocarpa] gi|222852151|gb|EEE89698.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449524892|ref|XP_004169455.1| PREDICTED: LOW QUALITY PROTEIN: ATP-citrate synthase beta chain protein 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356529147|ref|XP_003533158.1| PREDICTED: ATP-citrate synthase beta chain protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|148872938|gb|ABR15094.1| ATP citrate lyase alpha subunit [Glycyrrhiza uralensis] Back     alignment and taxonomy information
>gi|356556001|ref|XP_003546316.1| PREDICTED: ATP-citrate synthase beta chain protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|297792199|ref|XP_002863984.1| ATP-citrate lyase B-2 [Arabidopsis lyrata subsp. lyrata] gi|297309819|gb|EFH40243.1| ATP-citrate lyase B-2 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|115436118|ref|NP_001042817.1| Os01g0300200 [Oryza sativa Japonica Group] gi|75249275|sp|Q93VT8.1|ACLB1_ORYSJ RecName: Full=ATP-citrate synthase beta chain protein 1; Short=ATP-citrate synthase B-1; AltName: Full=ATP-citrate lyase B-1; AltName: Full=Citrate cleavage enzyme B-1 gi|14495217|dbj|BAB60936.1| putative ATP citrate lyase a-subunit [Oryza sativa Japonica Group] gi|15623805|dbj|BAB67865.1| putative ATP citrate lyase a-subunit [Oryza sativa Japonica Group] gi|113532348|dbj|BAF04731.1| Os01g0300200 [Oryza sativa Japonica Group] gi|125525538|gb|EAY73652.1| hypothetical protein OsI_01541 [Oryza sativa Indica Group] gi|125570053|gb|EAZ11568.1| hypothetical protein OsJ_01435 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|15239897|ref|NP_199757.1| ATP citrate lyase subunit B 2 [Arabidopsis thaliana] gi|75262456|sp|Q9FGX1.1|ACLB2_ARATH RecName: Full=ATP-citrate synthase beta chain protein 2; Short=ATP-citrate synthase B-2; AltName: Full=ATP-citrate lyase B-2; AltName: Full=Citrate cleavage enzyme B-2 gi|9759429|dbj|BAB09916.1| ATP citrate lyase [Arabidopsis thaliana] gi|14334788|gb|AAK59572.1| putative ATP citrate lyase [Arabidopsis thaliana] gi|16648644|gb|AAL25638.1| ATP-citrate lyase subunit B [Arabidopsis thaliana] gi|17065616|gb|AAL33788.1| putative ATP citrate lyase [Arabidopsis thaliana] gi|332008431|gb|AED95814.1| ATP citrate lyase subunit B 2 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query430
TAIR|locus:2158009608 ACLB-2 "ATP citrate lyase subu 1.0 0.707 0.937 6.4e-218
TAIR|locus:2084284608 ACLB-1 "ATP-citrate lyase B-1" 1.0 0.707 0.930 1.2e-216
DICTYBASE|DDB_G0278345622 acly "ATP citrate synthase" [D 0.995 0.688 0.663 7e-157
ASPGD|ASPL0000051301655 aclB [Emericella nidulans (tax 0.995 0.653 0.549 5.6e-132
MGI|MGI:1032511091 Acly "ATP citrate lyase" [Mus 0.995 0.392 0.553 9.1e-132
RGD|20181100 Acly "ATP citrate lyase" [Ratt 0.995 0.389 0.553 1.2e-131
UNIPROTKB|F1LQS41100 Acly "ATP-citrate synthase" [R 0.995 0.389 0.553 1.2e-131
UNIPROTKB|G3V8881101 Acly "ATP citrate lyase, isofo 0.995 0.388 0.553 1.2e-131
UNIPROTKB|G3V9G41091 Acly "ATP citrate lyase, isofo 0.995 0.392 0.553 1.2e-131
ZFIN|ZDB-GENE-031113-11092 aclya "ATP citrate lyase a" [D 0.995 0.391 0.560 1.2e-131
TAIR|locus:2158009 ACLB-2 "ATP citrate lyase subunit B 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2105 (746.1 bits), Expect = 6.4e-218, P = 6.4e-218
 Identities = 403/430 (93%), Positives = 419/430 (97%)

Query:     1 MSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEY 60
             MSNE+YNT+ARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQ+KMMVVLGELGGRDEY
Sbjct:   179 MSNEMYNTVARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQIKMMVVLGELGGRDEY 238

Query:    61 SLVEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAV 120
             SLVEALK+GKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQAL DAGA+
Sbjct:   239 SLVEALKEGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALIDAGAI 298

Query:   121 VPTSYEAFESAIKETFEKLVEEGKIPPVKEVTPPQIPEDLNTAIKSGKVRAPTHIISTIS 180
             VPTS+EA ESAIKETFEKLVEEGK+ P+KEV PPQIPEDLN+AIKSGKVRAPTHIISTIS
Sbjct:   299 VPTSFEALESAIKETFEKLVEEGKVSPIKEVIPPQIPEDLNSAIKSGKVRAPTHIISTIS 358

Query:   181 DDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVS 240
             DDRGEEPCYAGVPMSSI+EQGYGVGDVISLLWFKRSLPRYCT+FIEICIMLCADHGPCVS
Sbjct:   359 DDRGEEPCYAGVPMSSIIEQGYGVGDVISLLWFKRSLPRYCTKFIEICIMLCADHGPCVS 418

Query:   241 GAHNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKK 300
             GAHNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDA DR L+ YEFVE MKK
Sbjct:   419 GAHNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDACDRNLTPYEFVEGMKK 478

Query:   301 KGIRVPGIGHRIKRGDNRDKRVELLQKFARTHFPSVKYMEYAVQVETYTLSKANNLVLNV 360
             KGIRVPGIGHRIK  DNRDKRVELLQKFAR++FPSVKYMEYAV VETYTLSKANNLVLNV
Sbjct:   479 KGIRVPGIGHRIKSRDNRDKRVELLQKFARSNFPSVKYMEYAVTVETYTLSKANNLVLNV 538

Query:   361 DGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYR 420
             DGAIGSLFLDLLAGSGMF+KQEIDEIV+IGYLNGLFVLARSIGLIGHTFDQKRLKQPLYR
Sbjct:   539 DGAIGSLFLDLLAGSGMFTKQEIDEIVQIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYR 598

Query:   421 HPWEDVLYTK 430
             HPWEDVLYTK
Sbjct:   599 HPWEDVLYTK 608
GO:0000166 "nucleotide binding" evidence=IEA
GO:0003824 "catalytic activity" evidence=IEA
GO:0003878 "ATP citrate synthase activity" evidence=IEA;IDA
GO:0004775 "succinate-CoA ligase (ADP-forming) activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0008152 "metabolic process" evidence=IEA
GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA
GO:0046912 "transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer" evidence=IEA
GO:0005829 "cytosol" evidence=IDA
GO:0006085 "acetyl-CoA biosynthetic process" evidence=RCA;TAS
GO:0009346 "citrate lyase complex" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0006084 "acetyl-CoA metabolic process" evidence=RCA
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA
GO:0016126 "sterol biosynthetic process" evidence=RCA
GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA
GO:0016926 "protein desumoylation" evidence=RCA
GO:0050665 "hydrogen peroxide biosynthetic process" evidence=RCA
TAIR|locus:2084284 ACLB-1 "ATP-citrate lyase B-1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0278345 acly "ATP citrate synthase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ASPGD|ASPL0000051301 aclB [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
MGI|MGI:103251 Acly "ATP citrate lyase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|2018 Acly "ATP citrate lyase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1LQS4 Acly "ATP-citrate synthase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|G3V888 Acly "ATP citrate lyase, isoform CRA_a" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|G3V9G4 Acly "ATP citrate lyase, isoform CRA_b" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-031113-1 aclya "ATP citrate lyase a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q93VT8ACLB1_ORYSJ2, ., 3, ., 3, ., 80.93721.00.7072yesno
Q9FGX1ACLB2_ARATH2, ., 3, ., 3, ., 80.93721.00.7072yesno
Q9C522ACLB1_ARATH2, ., 3, ., 3, ., 80.93021.00.7072yesno
Q9P7W3ACL1_SCHPO2, ., 3, ., 3, ., 80.56300.99530.6959yesno
Q54YA0ACLY_DICDI2, ., 3, ., 3, ., 80.66350.99530.6881yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.3.30.766
3rd Layer2.3.3.80.824

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query430
PLN02522608 PLN02522, PLN02522, ATP citrate (pro-S)-lyase 0.0
cd06100227 cd06100, CCL_ACL-C, Citryl-CoA lyase (CCL), the C- 9e-90
COG0372390 COG0372, GltA, Citrate synthase [Energy production 2e-37
COG0074293 COG0074, SucD, Succinyl-CoA synthetase, alpha subu 7e-30
PRK06224263 PRK06224, PRK06224, citrate synthase; Provisional 6e-21
pfam00285352 pfam00285, Citrate_synt, Citrate synthase 2e-19
PTZ00187317 PTZ00187, PTZ00187, succinyl-CoA synthetase alpha 3e-19
pfam00549128 pfam00549, Ligase_CoA, CoA-ligase 3e-18
cd06099213 cd06099, CS_ACL-C_CCL, Citrate synthase (CS), citr 1e-17
PLN00125300 PLN00125, PLN00125, Succinyl-CoA ligase [GDP-formi 1e-13
TIGR01019286 TIGR01019, sucCoAalpha, succinyl-CoA synthetase, a 1e-13
cd06118358 cd06118, citrate_synt_like_1, Citrate synthase (CS 3e-13
PRK05678291 PRK05678, PRK05678, succinyl-CoA synthetase subuni 7e-13
cd06101265 cd06101, citrate_synt, Citrate synthase (CS) catal 8e-13
cd06102282 cd06102, citrate_synt_like_2, Citrate synthase (CS 3e-11
PLN02456455 PLN02456, PLN02456, citrate synthase 3e-08
cd06112373 cd06112, citrate_synt_like_1_1, Citrate synthase ( 1e-05
cd06107382 cd06107, EcCS_AthCS-per_like, Escherichia coli (Ec 1e-04
cd06109349 cd06109, BsCS-I_like, Bacillus subtilis (Bs) citra 0.001
cd06110356 cd06110, BSuCS-II_like, Bacillus subtilis (Bs) cit 0.003
>gnl|CDD|178137 PLN02522, PLN02522, ATP citrate (pro-S)-lyase Back     alignment and domain information 
 Score =  927 bits (2397), Expect = 0.0
 Identities = 402/430 (93%), Positives = 422/430 (98%)

Query: 1   MSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEY 60
           MSNE+YN IARVTDGIYEGIAIGGDVFPGSTLSDH+LRFNNIPQ+KM+VVLGELGGRDEY
Sbjct: 179 MSNEMYNVIARVTDGIYEGIAIGGDVFPGSTLSDHVLRFNNIPQIKMIVVLGELGGRDEY 238

Query: 61  SLVEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAV 120
           SLVEALKQGKV+KPVVAWVSGTCARLFKSEVQFGHAGAKSGG+MESAQAKN+AL+DAGA+
Sbjct: 239 SLVEALKQGKVSKPVVAWVSGTCARLFKSEVQFGHAGAKSGGDMESAQAKNKALKDAGAI 298

Query: 121 VPTSYEAFESAIKETFEKLVEEGKIPPVKEVTPPQIPEDLNTAIKSGKVRAPTHIISTIS 180
           VPTS+EA E+AIKETFEKLVEEGKI PVKEVTPPQIPEDLN+AIKSGKVRAPTHI+STIS
Sbjct: 299 VPTSFEALEAAIKETFEKLVEEGKIIPVKEVTPPQIPEDLNSAIKSGKVRAPTHIVSTIS 358

Query: 181 DDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVS 240
           DDRGEEPCYAGVPMSSI+E+ YGVGDVISLLWFKRSLPRYCT+FIE+CIMLCADHGPCVS
Sbjct: 359 DDRGEEPCYAGVPMSSIIEKDYGVGDVISLLWFKRSLPRYCTKFIEMCIMLCADHGPCVS 418

Query: 241 GAHNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKK 300
           GAHNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDRGL+ YEFVE MKK
Sbjct: 419 GAHNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDRGLTPYEFVEGMKK 478

Query: 301 KGIRVPGIGHRIKRGDNRDKRVELLQKFARTHFPSVKYMEYAVQVETYTLSKANNLVLNV 360
           KGIRVPGIGHRIK  DNRDKRVELLQK+ARTHFPSVKYMEYAVQVETYTLSKANNLVLNV
Sbjct: 479 KGIRVPGIGHRIKSRDNRDKRVELLQKYARTHFPSVKYMEYAVQVETYTLSKANNLVLNV 538

Query: 361 DGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYR 420
           DGAIGSLFLDLLAGSGMF+KQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYR
Sbjct: 539 DGAIGSLFLDLLAGSGMFTKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYR 598

Query: 421 HPWEDVLYTK 430
           HPWEDVLYTK
Sbjct: 599 HPWEDVLYTK 608

Length = 608
>gnl|CDD|99854 cd06100, CCL_ACL-C, Citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL Back     alignment and domain information
>gnl|CDD|223449 COG0372, GltA, Citrate synthase [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|223152 COG0074, SucD, Succinyl-CoA synthetase, alpha subunit [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|235748 PRK06224, PRK06224, citrate synthase; Provisional Back     alignment and domain information
>gnl|CDD|215837 pfam00285, Citrate_synt, Citrate synthase Back     alignment and domain information
>gnl|CDD|240307 PTZ00187, PTZ00187, succinyl-CoA synthetase alpha subunit; Provisional Back     alignment and domain information
>gnl|CDD|215988 pfam00549, Ligase_CoA, CoA-ligase Back     alignment and domain information
>gnl|CDD|99853 cd06099, CS_ACL-C_CCL, Citrate synthase (CS), citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL Back     alignment and domain information
>gnl|CDD|215066 PLN00125, PLN00125, Succinyl-CoA ligase [GDP-forming] subunit alpha Back     alignment and domain information
>gnl|CDD|130091 TIGR01019, sucCoAalpha, succinyl-CoA synthetase, alpha subunit Back     alignment and domain information
>gnl|CDD|99871 cd06118, citrate_synt_like_1, Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>gnl|CDD|180194 PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated Back     alignment and domain information
>gnl|CDD|99855 cd06101, citrate_synt, Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>gnl|CDD|99856 cd06102, citrate_synt_like_2, Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>gnl|CDD|215250 PLN02456, PLN02456, citrate synthase Back     alignment and domain information
>gnl|CDD|99865 cd06112, citrate_synt_like_1_1, Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>gnl|CDD|99860 cd06107, EcCS_AthCS-per_like, Escherichia coli (Ec) citrate synthase (CS) gltA and Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like Back     alignment and domain information
>gnl|CDD|99862 cd06109, BsCS-I_like, Bacillus subtilis (Bs) citrate synthase CS-I_like Back     alignment and domain information
>gnl|CDD|99863 cd06110, BSuCS-II_like, Bacillus subtilis (Bs) citrate synthase (CS)-II_like Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 430
PLN02522608 ATP citrate (pro-S)-lyase 100.0
COG0372390 GltA Citrate synthase [Energy production and conve 100.0
cd06115410 AthCS_per_like Arabidopsis thaliana (Ath) peroxiso 100.0
cd06116384 CaCS_like Chloroflexus aurantiacus (Ca) citrate sy 100.0
PRK14035371 citrate synthase; Provisional 100.0
cd06109349 BsCS-I_like Bacillus subtilis (Bs) citrate synthas 100.0
cd06106428 ScCit3_like Saccharomyces cerevisiae (Sc) 2-methyl 100.0
PRK12351378 methylcitrate synthase; Provisional 100.0
cd06107382 EcCS_AthCS-per_like Escherichia coli (Ec) citrate 100.0
PRK12350353 citrate synthase 2; Provisional 100.0
TIGR01793427 cit_synth_euk citrate (Si)-synthase, eukaryotic. T 100.0
TIGR01798412 cit_synth_I citrate synthase I (hexameric type). T 100.0
PRK14036377 citrate synthase; Provisional 100.0
cd06108363 Ec2MCS_like Escherichia coli (Ec) 2-methylcitrate 100.0
cd06117366 Ec2MCS_like_1 Subgroup of Escherichia coli (Ec) 2- 100.0
PLN02456455 citrate synthase 100.0
PRK05614419 gltA type II citrate synthase; Reviewed 100.0
cd06105427 ScCit1-2_like Saccharomyces cerevisiae (Sc) citrat 100.0
cd06103426 ScCS-like Saccharomyces cerevisiae (Sc) citrate sy 100.0
cd06112373 citrate_synt_like_1_1 Citrate synthase (CS) cataly 100.0
PRK14037377 citrate synthase; Provisional 100.0
PRK14034372 citrate synthase; Provisional 100.0
PRK09569437 type I citrate synthase; Reviewed 100.0
KOG1254600 consensus ATP-citrate lyase [Energy production and 100.0
cd06114400 EcCS_like Escherichia coli (Ec) citrate synthase ( 100.0
PRK14032447 citrate synthase; Provisional 100.0
cd06113406 citrate_synt_like_1_2 Citrate synthase (CS) cataly 100.0
cd06101265 citrate_synt Citrate synthase (CS) catalyzes the c 100.0
cd06111362 DsCS_like Cold-active citrate synthase (CS) from a 100.0
PRK14033375 citrate synthase; Provisional 100.0
TIGR01800368 cit_synth_II 2-methylcitrate synthase/citrate synt 100.0
PRK12349369 citrate synthase 3; Provisional 100.0
cd06118358 citrate_synt_like_1 Citrate synthase (CS) catalyze 100.0
cd06110356 BSuCS-II_like Bacillus subtilis (Bs) citrate synth 100.0
PF00285356 Citrate_synt: Citrate synthase; InterPro: IPR00202 100.0
PRK06224263 citrate synthase; Provisional 100.0
cd06102282 citrate_synt_like_2 Citrate synthase (CS) catalyze 100.0
cd06099213 CS_ACL-C_CCL Citrate synthase (CS), citryl-CoA lya 100.0
cd06100227 CCL_ACL-C Citryl-CoA lyase (CCL), the C-terminal p 100.0
KOG2617458 consensus Citrate synthase [Energy production and 100.0
COG0074293 SucD Succinyl-CoA synthetase, alpha subunit [Energ 100.0
PTZ00187317 succinyl-CoA synthetase alpha subunit; Provisional 99.97
KOG1255329 consensus Succinyl-CoA synthetase, alpha subunit [ 99.97
PLN00125300 Succinyl-CoA ligase [GDP-forming] subunit alpha 99.94
PRK05678291 succinyl-CoA synthetase subunit alpha; Validated 99.92
TIGR01019286 sucCoAalpha succinyl-CoA synthetase, alpha subunit 99.92
PF13607138 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin 99.9
TIGR02717447 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP 99.82
PRK06091555 membrane protein FdrA; Validated 99.59
COG1042598 Acyl-CoA synthetase (NDP forming) [Energy producti 99.4
PF00549153 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This e 99.33
PRK12349 369 citrate synthase 3; Provisional 97.1
PRK14032 447 citrate synthase; Provisional 96.84
cd06112 373 citrate_synt_like_1_1 Citrate synthase (CS) cataly 96.78
PRK14037 377 citrate synthase; Provisional 96.74
PRK14036 377 citrate synthase; Provisional 96.73
cd06118358 citrate_synt_like_1 Citrate synthase (CS) catalyze 96.59
cd06108 363 Ec2MCS_like Escherichia coli (Ec) 2-methylcitrate 96.53
cd06109349 BsCS-I_like Bacillus subtilis (Bs) citrate synthas 96.43
TIGR01793 427 cit_synth_euk citrate (Si)-synthase, eukaryotic. T 96.42
cd06115 410 AthCS_per_like Arabidopsis thaliana (Ath) peroxiso 96.4
cd06110356 BSuCS-II_like Bacillus subtilis (Bs) citrate synth 96.38
cd06105 427 ScCit1-2_like Saccharomyces cerevisiae (Sc) citrat 96.32
cd06111362 DsCS_like Cold-active citrate synthase (CS) from a 96.28
PRK12351 378 methylcitrate synthase; Provisional 96.27
PRK09569 437 type I citrate synthase; Reviewed 96.26
TIGR01800 368 cit_synth_II 2-methylcitrate synthase/citrate synt 96.25
cd06116 384 CaCS_like Chloroflexus aurantiacus (Ca) citrate sy 96.23
cd06113 406 citrate_synt_like_1_2 Citrate synthase (CS) cataly 96.22
PRK14035 371 citrate synthase; Provisional 96.21
cd06106 428 ScCit3_like Saccharomyces cerevisiae (Sc) 2-methyl 96.21
TIGR01798 412 cit_synth_I citrate synthase I (hexameric type). T 96.09
cd06107 382 EcCS_AthCS-per_like Escherichia coli (Ec) citrate 96.09
PRK14033 375 citrate synthase; Provisional 96.05
cd06117 366 Ec2MCS_like_1 Subgroup of Escherichia coli (Ec) 2- 96.04
PRK14034 372 citrate synthase; Provisional 96.01
cd06103 426 ScCS-like Saccharomyces cerevisiae (Sc) citrate sy 95.91
PLN02456 455 citrate synthase 95.73
PRK05614 419 gltA type II citrate synthase; Reviewed 95.32
cd06114 400 EcCS_like Escherichia coli (Ec) citrate synthase ( 95.26
TIGR01016386 sucCoAbeta succinyl-CoA synthetase, beta subunit. 92.72
PF00285356 Citrate_synt: Citrate synthase; InterPro: IPR00202 92.17
PRK00696388 sucC succinyl-CoA synthetase subunit beta; Provisi 91.68
TIGR00706207 SppA_dom signal peptide peptidase SppA, 36K type. 90.77
cd07014177 S49_SppA Signal peptide peptidase A. Signal peptid 88.92
cd00394161 Clp_protease_like Caseinolytic protease (ClpP) is 88.0
PRK14046392 malate--CoA ligase subunit beta; Provisional 86.08
cd07022214 S49_Sppa_36K_type Signal peptide peptidase A (SppA 86.03
cd07023208 S49_Sppa_N_C Signal peptide peptidase A (SppA), a 83.96
PRK12350353 citrate synthase 2; Provisional 83.73
TIGR02717447 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP 83.72
cd07018222 S49_SppA_67K_type Signal peptide peptidase A (SppA 83.05
PLN00124422 succinyl-CoA ligase [GDP-forming] subunit beta; Pr 80.95
cd07019211 S49_SppA_1 Signal peptide peptidase A (SppA), a se 80.23
>PLN02522 ATP citrate (pro-S)-lyase Back     alignment and domain information 
Probab=100.00  E-value=8.4e-101  Score=812.88  Aligned_cols=430  Identities=93%  Similarity=1.443  Sum_probs=412.4

Q ss_pred             ChHHHHHHHHhcCCCeeEEEEecCCccCCCCHHHHHHHhhcCCCccEEEEeeccCChhHHHHHHHHHcCCCCCCEEEEec
Q 014132            1 MSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAWVS   80 (430)
Q Consensus         1 ~~~ei~~~~~~~g~G~S~~i~~Ggd~i~g~~~~d~l~~l~~Dp~T~~Ivl~gE~~~~~E~~~a~~~~~~~~~KPvv~~~~   80 (430)
                      |++|+.+++.++|+|+|++||+|||+++|++|.|+|++|.+||+||+|++|+|+++..|++.++++++...+||||+||+
T Consensus       179 L~~ei~~~~~~~GlG~S~~VsiGnd~~~g~~~~D~L~~~~~Dp~Tk~IvlygEiGg~~e~~f~ea~~~a~~~KPVVa~ka  258 (608)
T PLN02522        179 MSNEMYNVIARVTDGIYEGIAIGGDVFPGSTLSDHVLRFNNIPQIKMIVVLGELGGRDEYSLVEALKQGKVSKPVVAWVS  258 (608)
T ss_pred             HHHHHHHHHHHcCCCeEEEEEeCCCCCCCCCHHHHHHHHhcCCCCCEEEEEEecCchhHHHHHHHHHHhcCCCCEEEEec
Confidence            58999999999999999999999999999999999999999999999999999999999999999986457899999999


Q ss_pred             CCcccccccccccccccccccCCcCcHHHHHHHHHHCCCcccCChHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCchhh
Q 014132           81 GTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFEKLVEEGKIPPVKEVTPPQIPEDL  160 (430)
Q Consensus        81 G~~~~~~p~g~~~gHagai~~~~~g~~~~k~~~l~~~Gv~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~e~~~~~~~~~~  160 (430)
                      |++++.+|++++||||||+++...+++++|.++|+++|+.++++++||+++++++|++|++.|.+.|.+|..+|++|+|.
T Consensus       259 Grsa~~~~~~aa~gHtGAiag~~~~ta~~k~aAlr~aGv~vv~s~~El~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (608)
T PLN02522        259 GTCARLFKSEVQFGHAGAKSGGDMESAQAKNKALKDAGAIVPTSFEALEAAIKETFEKLVEEGKIIPVKEVTPPQIPEDL  338 (608)
T ss_pred             cCCCccCccccccccccccccCCCccHHHHHHHHHHCCCeEeCCHHHHHHHHHHHHHHHHhCCceeecCCCCCCCCCcch
Confidence            99995445788899999999988889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcchhhHHHHHHhhccCCCCcccccCCCcchhhhccCCHHHHHHHhhhCCCCchhHHHHHHHHHHHhccCCCCCc
Q 014132          161 NTAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVS  240 (430)
Q Consensus       161 ~~~~l~ak~p~i~a~~~~i~~~~g~~~~~~g~dl~~li~~~~s~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHg~~~S  240 (430)
                      ++++.++++++-.+|+++||+.+++++.++|+++++||++.+||++++++||+|+.|++.++++||++|||+||||+|+|
T Consensus       339 ~~~~~~~~~~~~~~~~t~I~~~~~~~~~~rG~~i~dlig~~~~f~~~~~ll~~g~~p~~~~~~~ld~~Lvl~ADHG~~aS  418 (608)
T PLN02522        339 NSAIKSGKVRAPTHIVSTISDDRGEEPCYAGVPMSSIIEKDYGVGDVISLLWFKRSLPRYCTKFIEMCIMLCADHGPCVS  418 (608)
T ss_pred             HHHHhCCceecccceEEEeecCCCCeeEECCccHHHHhccCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCcc
Confidence            99999999999999999999999999999999999999987799999999999999999999999999999999999999


Q ss_pred             chhHHHHhhccCCChHHHHHHhhhccCCCccCchHHHHHHHHHHhccCCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCcH
Q 014132          241 GAHNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKGIRVPGIGHRIKRGDNRDK  320 (430)
Q Consensus       241 t~~aar~~aSt~a~~~~av~Agl~a~Gp~hGGa~~~a~~~l~~~~~~~~~~~~~v~~~~~~~~~ipGFGH~vy~~~~~DP  320 (430)
                      |+|++|+++||++|+|+||+||++++||+||||++.|++||+++.+.+.+++++|+++++++++|||||||+|+.+++||
T Consensus       419 t~~aarv~AStg~dl~savaaGl~alGp~hGGA~e~a~~~l~ei~~~~~~~~~~V~~~~~~~~~IpGFGHrvy~~~~~Dp  498 (608)
T PLN02522        419 GAHNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDRGLTPYEFVEGMKKKGIRVPGIGHRIKSRDNRDK  498 (608)
T ss_pred             HHHHHHHhhccCCcHHHHHHHHHHhcCCcccchHHHHHHHHHHHhccccCHHHHHHHHHhCCCccccCCCCCCCCCCCCh
Confidence            97799999999999999999999999999999999999999999876458999999999999999999999997778999


Q ss_pred             HHHHHHHHHHHhCCCChHHHHHHHHHHHHhhccCCcccchhhHHHHHHHHhccCCCCCchhhhHHHHhhhhcchhhhhhh
Q 014132          321 RVELLQKFARTHFPSVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLAR  400 (430)
Q Consensus       321 Ra~~L~~~~~~~~~~~~~~~~a~~~e~~~~~~~~~l~~Nvd~~~a~l~~~lG~~~~~ft~~e~~~~~p~~~~~~lf~~~R  400 (430)
                      |+++|++++++++..++++++++++|+++.+++++|+||||||+|+++++||+|.+|||++|++|++.++.++++|++||
T Consensus       499 Ra~~L~~~~~~~~~~~~~~~~a~~vE~~~~~~~k~L~~NVDga~a~i~~~lg~p~~~ft~~e~~~~~~~~~~~~lF~l~R  578 (608)
T PLN02522        499 RVELLQKYARTHFPSVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFTKQEIDEIVEIGYLNGLFVLAR  578 (608)
T ss_pred             hHHHHHHHHHHhccccHHHHHHHHHHHHHhhccCCCCcCcHhHHHHHHHHcCCCcccCccccccccccccccceEEEeeh
Confidence            99999999999988899999999999987666799999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhHHHhhhhcCCCCCCCCcCcccCC
Q 014132          401 SIGLIGHTFDQKRLKQPLYRHPWEDVLYTK  430 (430)
Q Consensus       401 ~~GwiAH~~Eq~~~~~P~~r~~~~~~~Y~~  430 (430)
                      ++||+||++||+++.+|++|++||+|.|+|
T Consensus       579 ~~GwiAH~~Eq~~~~~~~~r~~~~~i~y~~  608 (608)
T PLN02522        579 SIGLIGHTFDQKRLKQPLYRHPWEDVLYTK  608 (608)
T ss_pred             HHHHHHHHHHHHHhhCCcccCchhhccccC
Confidence            999999999999999999999999999986

>COG0372 GltA Citrate synthase [Energy production and conversion] Back     alignment and domain information
>cd06115 AthCS_per_like Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like Back     alignment and domain information
>cd06116 CaCS_like Chloroflexus aurantiacus (Ca) citrate synthase (CS)_like Back     alignment and domain information
>PRK14035 citrate synthase; Provisional Back     alignment and domain information
>cd06109 BsCS-I_like Bacillus subtilis (Bs) citrate synthase CS-I_like Back     alignment and domain information
>cd06106 ScCit3_like Saccharomyces cerevisiae (Sc) 2-methylcitrate synthase Cit3-like Back     alignment and domain information
>PRK12351 methylcitrate synthase; Provisional Back     alignment and domain information
>cd06107 EcCS_AthCS-per_like Escherichia coli (Ec) citrate synthase (CS) gltA and Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like Back     alignment and domain information
>PRK12350 citrate synthase 2; Provisional Back     alignment and domain information
>TIGR01793 cit_synth_euk citrate (Si)-synthase, eukaryotic Back     alignment and domain information
>TIGR01798 cit_synth_I citrate synthase I (hexameric type) Back     alignment and domain information
>PRK14036 citrate synthase; Provisional Back     alignment and domain information
>cd06108 Ec2MCS_like Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like Back     alignment and domain information
>cd06117 Ec2MCS_like_1 Subgroup of Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like Back     alignment and domain information
>PLN02456 citrate synthase Back     alignment and domain information
>PRK05614 gltA type II citrate synthase; Reviewed Back     alignment and domain information
>cd06105 ScCit1-2_like Saccharomyces cerevisiae (Sc) citrate synthases Cit1-2_like Back     alignment and domain information
>cd06103 ScCS-like Saccharomyces cerevisiae (Sc) citrate synthase (CS)-like Back     alignment and domain information
>cd06112 citrate_synt_like_1_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>PRK14037 citrate synthase; Provisional Back     alignment and domain information
>PRK14034 citrate synthase; Provisional Back     alignment and domain information
>PRK09569 type I citrate synthase; Reviewed Back     alignment and domain information
>KOG1254 consensus ATP-citrate lyase [Energy production and conversion] Back     alignment and domain information
>cd06114 EcCS_like Escherichia coli (Ec) citrate synthase (CS) GltA_like Back     alignment and domain information
>PRK14032 citrate synthase; Provisional Back     alignment and domain information
>cd06113 citrate_synt_like_1_2 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>cd06101 citrate_synt Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>cd06111 DsCS_like Cold-active citrate synthase (CS) from an Antarctic bacterial strain DS2-3R (Ds)-like Back     alignment and domain information
>PRK14033 citrate synthase; Provisional Back     alignment and domain information
>TIGR01800 cit_synth_II 2-methylcitrate synthase/citrate synthase II Back     alignment and domain information
>PRK12349 citrate synthase 3; Provisional Back     alignment and domain information
>cd06118 citrate_synt_like_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>cd06110 BSuCS-II_like Bacillus subtilis (Bs) citrate synthase (CS)-II_like Back     alignment and domain information
>PF00285 Citrate_synt: Citrate synthase; InterPro: IPR002020 Citrate synthase 2 Back     alignment and domain information
>PRK06224 citrate synthase; Provisional Back     alignment and domain information
>cd06102 citrate_synt_like_2 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>cd06099 CS_ACL-C_CCL Citrate synthase (CS), citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL Back     alignment and domain information
>cd06100 CCL_ACL-C Citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL Back     alignment and domain information
>KOG2617 consensus Citrate synthase [Energy production and conversion] Back     alignment and domain information
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion] Back     alignment and domain information
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional Back     alignment and domain information
>KOG1255 consensus Succinyl-CoA synthetase, alpha subunit [Energy production and conversion] Back     alignment and domain information
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha Back     alignment and domain information
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated Back     alignment and domain information
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit Back     alignment and domain information
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A Back     alignment and domain information
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain Back     alignment and domain information
>PRK06091 membrane protein FdrA; Validated Back     alignment and domain information
>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion] Back     alignment and domain information
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6 Back     alignment and domain information
>PRK12349 citrate synthase 3; Provisional Back     alignment and domain information
>PRK14032 citrate synthase; Provisional Back     alignment and domain information
>cd06112 citrate_synt_like_1_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>PRK14037 citrate synthase; Provisional Back     alignment and domain information
>PRK14036 citrate synthase; Provisional Back     alignment and domain information
>cd06118 citrate_synt_like_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>cd06108 Ec2MCS_like Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like Back     alignment and domain information
>cd06109 BsCS-I_like Bacillus subtilis (Bs) citrate synthase CS-I_like Back     alignment and domain information
>TIGR01793 cit_synth_euk citrate (Si)-synthase, eukaryotic Back     alignment and domain information
>cd06115 AthCS_per_like Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like Back     alignment and domain information
>cd06110 BSuCS-II_like Bacillus subtilis (Bs) citrate synthase (CS)-II_like Back     alignment and domain information
>cd06105 ScCit1-2_like Saccharomyces cerevisiae (Sc) citrate synthases Cit1-2_like Back     alignment and domain information
>cd06111 DsCS_like Cold-active citrate synthase (CS) from an Antarctic bacterial strain DS2-3R (Ds)-like Back     alignment and domain information
>PRK12351 methylcitrate synthase; Provisional Back     alignment and domain information
>PRK09569 type I citrate synthase; Reviewed Back     alignment and domain information
>TIGR01800 cit_synth_II 2-methylcitrate synthase/citrate synthase II Back     alignment and domain information
>cd06116 CaCS_like Chloroflexus aurantiacus (Ca) citrate synthase (CS)_like Back     alignment and domain information
>cd06113 citrate_synt_like_1_2 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>PRK14035 citrate synthase; Provisional Back     alignment and domain information
>cd06106 ScCit3_like Saccharomyces cerevisiae (Sc) 2-methylcitrate synthase Cit3-like Back     alignment and domain information
>TIGR01798 cit_synth_I citrate synthase I (hexameric type) Back     alignment and domain information
>cd06107 EcCS_AthCS-per_like Escherichia coli (Ec) citrate synthase (CS) gltA and Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like Back     alignment and domain information
>PRK14033 citrate synthase; Provisional Back     alignment and domain information
>cd06117 Ec2MCS_like_1 Subgroup of Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like Back     alignment and domain information
>PRK14034 citrate synthase; Provisional Back     alignment and domain information
>cd06103 ScCS-like Saccharomyces cerevisiae (Sc) citrate synthase (CS)-like Back     alignment and domain information
>PLN02456 citrate synthase Back     alignment and domain information
>PRK05614 gltA type II citrate synthase; Reviewed Back     alignment and domain information
>cd06114 EcCS_like Escherichia coli (Ec) citrate synthase (CS) GltA_like Back     alignment and domain information
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit Back     alignment and domain information
>PF00285 Citrate_synt: Citrate synthase; InterPro: IPR002020 Citrate synthase 2 Back     alignment and domain information
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional Back     alignment and domain information
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type Back     alignment and domain information
>cd07014 S49_SppA Signal peptide peptidase A Back     alignment and domain information
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease Back     alignment and domain information
>PRK14046 malate--CoA ligase subunit beta; Provisional Back     alignment and domain information
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad Back     alignment and domain information
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad Back     alignment and domain information
>PRK12350 citrate synthase 2; Provisional Back     alignment and domain information
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain Back     alignment and domain information
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad Back     alignment and domain information
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional Back     alignment and domain information
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query430
3mwe_B335 Truncated Human Atp-Citrate Lyase With Tartrate Bou 6e-48
3pff_A829 Truncated Human Atp-Citrate Lyase With Adp And Tart 5e-46
3mwd_B334 Truncated Human Atp-Citrate Lyase With Citrate Boun 8e-46
2yv2_A297 Crystal Structure Of Succinyl-Coa Synthetase Alpha 1e-10
2nua_A288 C123av Mutant Of E. Coli Succinyl-Coa Synthetase Le 8e-10
1jkj_A288 E. Coli Scs Length = 288 8e-10
2nu8_A288 C123at Mutant Of E. Coli Succinyl-Coa Synthetase Le 8e-10
2nu7_A288 C123as Mutant Of E. Coli Succinyl-Coa Synthetase Le 8e-10
1cqi_A286 Crystal Structure Of The Complex Of Adp And Mg2+ Wi 9e-10
2p2w_A367 Crystal Structure Of Citrate Synthase From Thermoto 9e-08
1oi7_A288 The Crystal Structure Of Succinyl-Coa Synthetase Al 8e-07
3ufx_A296 Thermus Aquaticus Succinyl-coa Synthetase In Comple 9e-07
2nu9_A288 C123at Mutant Of E. Coli Succinyl-Coa Synthetase Or 1e-06
2nu6_A288 C123aa Mutant Of E. Coli Succinyl-Coa Synthetase Le 1e-06
2scu_A288 A Detailed Description Of The Structure Of Succinyl 1e-06
1o7x_A377 Citrate Synthase From Sulfolobus Solfataricus Lengt 2e-06
1iom_A377 Crystal Structure Of Citrate Synthase From Thermus 1e-05
1euc_A311 Crystal Structure Of Dephosphorylated Pig Heart, Gt 2e-04
2fpg_A305 Crystal Structure Of Pig Gtp-Specific Succinyl-Coa 3e-04
2c6x_A363 Structure Of Bacillus Subtilis Citrate Synthase Len 3e-04
>pdb|3MWE|B Chain B, Truncated Human Atp-Citrate Lyase With Tartrate Bound Length = 335 Back     alignment and structure 
Iteration: 1

 Score =  188 bits (477), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 85/156 (54%), Positives = 112/156 (71%)
Query: 1   MSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEY 60
           MSNEL N I+R TDG+YEG+AIGGD +PGST  DH+LR+ + P VKM+VVLGE+GG +EY
Sbjct: 180 MSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIGGTEEY 239
Query: 61  SLVEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAV 120
            +   +K+G++ KP+V W  GTCA +F SEVQFGHAGA +    E+A AKNQAL++AG  
Sbjct: 240 KICRGIKEGRLTKPIVCWCIGTCATMFSSEVQFGHAGACANQASETAVAKNQALKEAGVF 299
Query: 121 VPTSYEAFESAIKETFEKLVEEGKIPPVKEVTPPQI 156
           VP S++     I+  +E LV  G I P +EV PP +
Sbjct: 300 VPRSFDELGEIIQSVYEDLVANGVIVPAQEVPPPTV 335
>pdb|3PFF|A Chain A, Truncated Human Atp-Citrate Lyase With Adp And Tartrate Bound Length = 829 Back     alignment and structure
>pdb|3MWD|B Chain B, Truncated Human Atp-Citrate Lyase With Citrate Bound Length = 334 Back     alignment and structure
>pdb|2YV2|A Chain A, Crystal Structure Of Succinyl-Coa Synthetase Alpha Chain From Aeropyrum Pernix K1 Length = 297 Back     alignment and structure
>pdb|2NUA|A Chain A, C123av Mutant Of E. Coli Succinyl-Coa Synthetase Length = 288 Back     alignment and structure
>pdb|1JKJ|A Chain A, E. Coli Scs Length = 288 Back     alignment and structure
>pdb|2NU8|A Chain A, C123at Mutant Of E. Coli Succinyl-Coa Synthetase Length = 288 Back     alignment and structure
>pdb|2NU7|A Chain A, C123as Mutant Of E. Coli Succinyl-Coa Synthetase Length = 288 Back     alignment and structure
>pdb|1CQI|A Chain A, Crystal Structure Of The Complex Of Adp And Mg2+ With Dephosphorylated E. Coli Succinyl-Coa Synthetase Length = 286 Back     alignment and structure
>pdb|2P2W|A Chain A, Crystal Structure Of Citrate Synthase From Thermotoga Maritima Msb8 Length = 367 Back     alignment and structure
>pdb|1OI7|A Chain A, The Crystal Structure Of Succinyl-Coa Synthetase Alpha Subunit From Thermus Thermophilus Length = 288 Back     alignment and structure
>pdb|3UFX|A Chain A, Thermus Aquaticus Succinyl-coa Synthetase In Complex With Gdp-mn2+ Length = 296 Back     alignment and structure
>pdb|2NU9|A Chain A, C123at Mutant Of E. Coli Succinyl-Coa Synthetase Orthorhombic Crystal Form Length = 288 Back     alignment and structure
>pdb|2NU6|A Chain A, C123aa Mutant Of E. Coli Succinyl-Coa Synthetase Length = 288 Back     alignment and structure
>pdb|2SCU|A Chain A, A Detailed Description Of The Structure Of Succinyl-Coa Synthetase From Escherichia Coli Length = 288 Back     alignment and structure
>pdb|1O7X|A Chain A, Citrate Synthase From Sulfolobus Solfataricus Length = 377 Back     alignment and structure
>pdb|1IOM|A Chain A, Crystal Structure Of Citrate Synthase From Thermus Thermophilus Hb8 Length = 377 Back     alignment and structure
>pdb|1EUC|A Chain A, Crystal Structure Of Dephosphorylated Pig Heart, Gtp- Specific Succinyl-Coa Synthetase Length = 311 Back     alignment and structure
>pdb|2FPG|A Chain A, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa Synthetase In Complex With Gdp Length = 305 Back     alignment and structure
>pdb|2C6X|A Chain A, Structure Of Bacillus Subtilis Citrate Synthase Length = 363 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query430
3mwd_B334 ATP-citrate synthase; ATP-grAsp, phosphohistidine, 4e-65
3pff_A829 ATP-citrate synthase; phosphohistidine, organic ac 1e-63
2yv2_A297 Succinyl-COA synthetase alpha chain; COA-binding d 3e-18
2fp4_A305 Succinyl-COA ligase [GDP-forming] alpha-chain, mit 4e-16
2yv1_A294 Succinyl-COA ligase [ADP-forming] subunit alpha; C 4e-16
1oi7_A288 Succinyl-COA synthetase alpha chain; SCS, ligase, 8e-16
2nu8_A288 Succinyl-COA ligase [ADP-forming] subunit alpha; c 8e-16
1csh_A435 Citrate synthase; lyase(OXO-acid); HET: AMX; 1.65A 3e-13
3l96_A426 Citrate synthase; quaternary, hexamer, GRAM-negati 3e-09
3dmy_A480 Protein FDRA; predicted actyl-COA synthetase, nysg 7e-09
2h12_A436 Citrate synthase; acidophIle, acetic acid resistan 2e-06
2p2w_A367 Citrate synthase; transferase, structural genomics 2e-06
3msu_A427 Citrate synthase; helix bundle, APHA-beta fold, cs 3e-06
1o7x_A377 Citrate synthase; lyase, tricarboxylic acid cycle; 3e-05
2c6x_A363 Citrate synthase 1; tricarboxylic acid cycle, tran 5e-05
2ifc_A385 Citrate synthase; oxaloacetate, EC 2.3.3.1, transf 6e-05
1vgm_A378 378AA long hypothetical citrate synthase; open for 8e-05
3o8j_A404 2-methylcitrate synthase; short chain fatty acids, 2e-04
3hwk_A414 Methylcitrate synthase; niaid, ssgcid, structural 2e-04
1iom_A377 Citrate synthase; open form, riken structural geno 4e-04
3tqg_A375 2-methylcitrate synthase; energy metabolism, trans 4e-04
1a59_A378 Citrate synthase; cold-activity; HET: COA CIT; 2.0 7e-04
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B* Length = 334 Back     alignment and structure
 Score =  211 bits (538), Expect = 4e-65
 Identities = 85/154 (55%), Positives = 111/154 (72%)

Query: 1   MSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEY 60
           MSNEL N I+R TDG+YEG+AIGGD +PGST  DH+LR+ + P VKM+VVLGE+GG +EY
Sbjct: 180 MSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIGGTEEY 239

Query: 61  SLVEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAV 120
            +   +K+G++ KP+V W  GTCA +F SEVQFGHAGA +    E+A AKNQAL++AG  
Sbjct: 240 KICRGIKEGRLTKPIVCWCIGTCATMFSSEVQFGHAGACANQASETAVAKNQALKEAGVF 299

Query: 121 VPTSYEAFESAIKETFEKLVEEGKIPPVKEVTPP 154
           VP S++     I+  +E LV  G I P +EV PP
Sbjct: 300 VPRSFDELGEIIQSVYEDLVANGVIVPAQEVPPP 333
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens} Length = 829 Back     alignment and structure
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix} Length = 297 Back     alignment and structure
>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A* Length = 305 Back     alignment and structure
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii} Length = 294 Back     alignment and structure
>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 Length = 288 Back     alignment and structure
>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* Length = 288 Back     alignment and structure
>1csh_A Citrate synthase; lyase(OXO-acid); HET: AMX; 1.65A {Gallus gallus} SCOP: a.103.1.1 PDB: 1amz_A* 1csi_A* 1csr_A* 1css_A* 1al6_A* 6csc_A* 2cts_A* 3enj_A 1cts_A 4cts_A 1csc_A* 2csc_A* 3csc_A* 4csc_A* 5csc_A 5cts_A* 6cts_A* 5csc_B Length = 435 Back     alignment and structure
>3l96_A Citrate synthase; quaternary, hexamer, GRAM-negative bacteri allostery, oxaloacetate, acetylcoa, NADH, allosteric enzyme transferase; 1.90A {Escherichia coli} PDB: 3l97_A* 3l98_A* 3l99_A 1k3p_A 1nxe_A 1nxg_A* 1owb_A* 1owc_A 4e6y_A Length = 426 Back     alignment and structure
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli} Length = 480 Back     alignment and structure
>2h12_A Citrate synthase; acidophIle, acetic acid resistance, allostery, transferase; HET: CMX; 1.85A {Acetobacter aceti} Length = 436 Back     alignment and structure
>2p2w_A Citrate synthase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; HET: FLC; 1.90A {Thermotoga maritima} Length = 367 Back     alignment and structure
>3msu_A Citrate synthase; helix bundle, APHA-beta fold, csgid, center for structural G of infectious diseases, transferase; HET: OAA; 1.84A {Francisella tularensis} Length = 427 Back     alignment and structure
>1o7x_A Citrate synthase; lyase, tricarboxylic acid cycle; 2.7A {Sulfolobus solfataricus} SCOP: a.103.1.1 Length = 377 Back     alignment and structure
>2c6x_A Citrate synthase 1; tricarboxylic acid cycle, transferase, allosteric enzyme, enzyme thermostability; HET: COZ CIT; 3.4A {Bacillus subtilis} Length = 363 Back     alignment and structure
>2ifc_A Citrate synthase; oxaloacetate, EC 2.3.3.1, transferase; 1.70A {Thermoplasma acidophilum} PDB: 2r9e_A* 2r26_A* Length = 385 Back     alignment and structure
>1vgm_A 378AA long hypothetical citrate synthase; open form, transferase; 2.00A {Sulfolobus tokodaii} Length = 378 Back     alignment and structure
>3o8j_A 2-methylcitrate synthase; short chain fatty acids, propionate metabolism, 2-methylcitr cycle, PRPC or 2-MCS, GLTA or CS, 2-methy synthase; 2.41A {Salmonella enterica} Length = 404 Back     alignment and structure
>3hwk_A Methylcitrate synthase; niaid, ssgcid, structural genomics, seattle structural genomics center for infectious disease, tubercluosis; 2.30A {Mycobacterium tuberculosis} Length = 414 Back     alignment and structure
>1iom_A Citrate synthase; open form, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.50A {Thermus thermophilus} SCOP: a.103.1.1 PDB: 1ixe_A* Length = 377 Back     alignment and structure
>3tqg_A 2-methylcitrate synthase; energy metabolism, transferase; 2.30A {Coxiella burnetii} Length = 375 Back     alignment and structure
>1a59_A Citrate synthase; cold-activity; HET: COA CIT; 2.09A {Antarctic bacterium ds2-3r} SCOP: a.103.1.1 Length = 378 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query430
2h12_A436 Citrate synthase; acidophIle, acetic acid resistan 100.0
3msu_A427 Citrate synthase; helix bundle, APHA-beta fold, cs 100.0
3l96_A426 Citrate synthase; quaternary, hexamer, GRAM-negati 100.0
2p2w_A367 Citrate synthase; transferase, structural genomics 100.0
1vgm_A378 378AA long hypothetical citrate synthase; open for 100.0
2c6x_A363 Citrate synthase 1; tricarboxylic acid cycle, tran 100.0
3hwk_A414 Methylcitrate synthase; niaid, ssgcid, structural 100.0
1o7x_A377 Citrate synthase; lyase, tricarboxylic acid cycle; 100.0
1iom_A377 Citrate synthase; open form, riken structural geno 100.0
1aj8_A371 Citrate synthase; hyperthermostable, lyase; HET: C 100.0
1csh_A435 Citrate synthase; lyase(OXO-acid); HET: AMX; 1.65A 100.0
3tqg_A375 2-methylcitrate synthase; energy metabolism, trans 100.0
1vgp_A373 373AA long hypothetical citrate synthase; open for 100.0
1a59_A378 Citrate synthase; cold-activity; HET: COA CIT; 2.0 100.0
3o8j_A404 2-methylcitrate synthase; short chain fatty acids, 100.0
2ifc_A385 Citrate synthase; oxaloacetate, EC 2.3.3.1, transf 100.0
2ibp_A409 Citrate synthase; disulfide bond, homodimer, therm 100.0
3mwd_B334 ATP-citrate synthase; ATP-grAsp, phosphohistidine, 99.97
3pff_A829 ATP-citrate synthase; phosphohistidine, organic ac 99.96
2yv2_A297 Succinyl-COA synthetase alpha chain; COA-binding d 99.96
2fp4_A305 Succinyl-COA ligase [GDP-forming] alpha-chain, mit 99.95
1oi7_A288 Succinyl-COA synthetase alpha chain; SCS, ligase, 99.95
2yv1_A294 Succinyl-COA ligase [ADP-forming] subunit alpha; C 99.95
2nu8_A288 Succinyl-COA ligase [ADP-forming] subunit alpha; c 99.95
2csu_A457 457AA long hypothetical protein; structural genomi 99.84
3dmy_A480 Protein FDRA; predicted actyl-COA synthetase, nysg 99.66
3tqg_A375 2-methylcitrate synthase; energy metabolism, trans 95.48
3o8j_A 404 2-methylcitrate synthase; short chain fatty acids, 94.97
3hwk_A414 Methylcitrate synthase; niaid, ssgcid, structural 94.7
1vgp_A 373 373AA long hypothetical citrate synthase; open for 94.64
2p2w_A 367 Citrate synthase; transferase, structural genomics 94.44
1iom_A 377 Citrate synthase; open form, riken structural geno 94.22
3ufx_B397 Succinyl-COA synthetase beta subunit; ATP-grAsp fo 94.21
2h12_A 436 Citrate synthase; acidophIle, acetic acid resistan 93.9
3l96_A 426 Citrate synthase; quaternary, hexamer, GRAM-negati 93.47
1o7x_A 377 Citrate synthase; lyase, tricarboxylic acid cycle; 92.84
2c6x_A363 Citrate synthase 1; tricarboxylic acid cycle, tran 92.48
1aj8_A 371 Citrate synthase; hyperthermostable, lyase; HET: C 92.47
1a59_A 378 Citrate synthase; cold-activity; HET: COA CIT; 2.0 92.26
1vgm_A 378 378AA long hypothetical citrate synthase; open for 92.01
1csh_A 435 Citrate synthase; lyase(OXO-acid); HET: AMX; 1.65A 91.47
2ifc_A 385 Citrate synthase; oxaloacetate, EC 2.3.3.1, transf 91.39
2csu_A457 457AA long hypothetical protein; structural genomi 90.78
2ibp_A 409 Citrate synthase; disulfide bond, homodimer, therm 90.64
3msu_A 427 Citrate synthase; helix bundle, APHA-beta fold, cs 89.87
2nu8_B388 SCS-beta, succinyl-COA synthetase beta chain; citr 88.22
2fp4_B395 Succinyl-COA ligase [GDP-forming] beta-chain, mito 88.03
3rst_A240 Signal peptide peptidase SPPA; alpha/beta protein 84.44
3kqf_A265 Enoyl-COA hydratase/isomerase family protein; IDP0 82.79
3dmy_A480 Protein FDRA; predicted actyl-COA synthetase, nysg 81.3
>2h12_A Citrate synthase; acidophIle, acetic acid resistance, allostery, transferase; HET: CMX; 1.85A {Acetobacter aceti} Back     alignment and structure
Probab=100.00  E-value=9.7e-62  Score=500.41  Aligned_cols=323  Identities=20%  Similarity=0.313  Sum_probs=251.0

Q ss_pred             ccCCCCHHHHHHHhhcCCCccEEEEeeccCChhHHHH-HHHHH-cCCCCCCEEEEecCCcccccccccccccccccccCC
Q 014132           26 VFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSL-VEALK-QGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGE  103 (430)
Q Consensus        26 ~i~g~~~~d~l~~l~~Dp~T~~Ivl~gE~~~~~E~~~-a~~~~-~~~~~KPvv~~~~G~~~~~~p~g~~~gHagai~~~~  103 (430)
                      .|+|.++.|+.+. ..-+++-..+++||.|..+|.+. .+-++ .+..+..|..++.+.     |..   .|..++.   
T Consensus        75 ~YRGy~I~dLa~~-~~feEvayLLl~G~LPt~~el~~f~~~l~~~~~lp~~v~~~~~~~-----p~~---~hPM~~l---  142 (436)
T 2h12_A           75 LHRGYPIAQLAEN-ASYEEVIYLLLNGELPNKAQYDTFTNTLTNHTLLHEQIRNFFNGF-----RRD---AHPMAIL---  142 (436)
T ss_dssp             EETTEEHHHHHHH-CCHHHHHHHHHHSSCCCHHHHHHHHHHHHTTCSCCGGGHHHHTTS-----CTT---CCHHHHH---
T ss_pred             EECCeEHHHHHhc-CCHHHHHHHHHcCCCCCHHHHHHHHHHHHhccCCCHHHHHHHHhC-----CCC---CCHHHHH---
Confidence            6999999999985 34555777789999998776543 22222 222333333333221     111   1332221   


Q ss_pred             cCcHHHHHHHHHHCCCcccCChHHHHHHHHHHHHHHhhcCCCCCCC-CCCCCCCchhhHHHHHhcchhhHHHHHHhhccC
Q 014132          104 MESAQAKNQALRDAGAVVPTSYEAFESAIKETFEKLVEEGKIPPVK-EVTPPQIPEDLNTAIKSGKVRAPTHIISTISDD  182 (430)
Q Consensus       104 ~g~~~~k~~~l~~~Gv~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~-e~~~~~~~~~~~~~~l~ak~p~i~a~~~~i~~~  182 (430)
                                                ..+-.+|      +.++|+. +...+ ....+++++|+||+|+|++++|+  +.
T Consensus       143 --------------------------~~~v~aL------~~~~~~~~~~~~~-~~~~~~a~rLiAk~ptiaa~~yr--~~  187 (436)
T 2h12_A          143 --------------------------CGTVGAL------SAFYPDANDIAIP-ANRDLAAMRLIAKIPTIAAWAYK--YT  187 (436)
T ss_dssp             --------------------------HHHHHHH------GGGCC---------CCHHHHHHHHHHHHHHHHHHHHH--HH
T ss_pred             --------------------------HHHHHHH------hhcCcccccCCCH-HHHHHHHHHHHHHHHHHHHHHHH--Hh
Confidence                                      1111111      1223321 11112 34467899999999999999999  45


Q ss_pred             CCCcccccCCCcchhhhccCCHHHHHHHhhhCCC-----CchhHHHHHHHHHHHhccCCCCCcchhHHHHhhccCCChHH
Q 014132          183 RGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRS-----LPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARAGKDLVS  257 (430)
Q Consensus       183 ~g~~~~~~g~dl~~li~~~~s~~~~l~~l~~~~~-----~~~~~~~~l~~~lvl~aDHg~~~St~~aar~~aSt~a~~~~  257 (430)
                      .|++++++..++++       .+||++|+ ++..     |++.++++||++||||||||+|+|| |++|+++||++|+|+
T Consensus       188 ~g~~~~~p~~~ls~-------a~nfl~ml-~g~~~~~~~~~~~~~~~ld~~LiLhADHe~NaST-ftaRvvaSt~ad~ys  258 (436)
T 2h12_A          188 QGEAFIYPRNDLNY-------AENFLSMM-FARMSEPYKVNPVLARAMNRILILHADHEQNAST-STVRLAGSTGANPFA  258 (436)
T ss_dssp             HTCCCCCCCTTSCH-------HHHHHHHH-HCBTTBCCCCCHHHHHHHHHHHHHHSCCSSCHHH-HHHHHHHTTTCCHHH
T ss_pred             cCCCCCCCCCCCCH-------HHHHHHHh-cCCCCccCCCCHHHHHHHHhhheeecCCCCchHH-HHHHHHHhcCccHHH
Confidence            67788888888766       66677766 6654     8889999999999999999999999 999999999999999


Q ss_pred             HHHHhhhcc-CCCccCchHHHHHHHHHHhccCCCHHHHHHHHHHcC--CCCCCCCCCCCCCCCCcHHHHHHHHHHHHh--
Q 014132          258 SLVSGLLTI-GPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKG--IRVPGIGHRIKRGDNRDKRVELLQKFARTH--  332 (430)
Q Consensus       258 av~Agl~a~-Gp~hGGa~~~a~~~l~~~~~~~~~~~~~v~~~~~~~--~~ipGFGH~vy~~~~~DPRa~~L~~~~~~~--  332 (430)
                      |++||++++ ||+|||||++|++||+++.+. +++++||++.++++  ++|||||||||+  +.|||+++|+++++++  
T Consensus       259 aiaAgi~aL~GPlHGGAne~v~~ml~ei~~~-~~v~~~i~~~l~~~~g~~imGFGHrVYk--~~DPRa~iLk~~a~~l~~  335 (436)
T 2h12_A          259 CIAAGIAALWGPAHGGANEAVLKMLARIGKK-ENIPAFIAQVKDKNSGVKLMGFGHRVYK--NFDPRAKIMQQTCHEVLT  335 (436)
T ss_dssp             HHHHHHHHHHSTTTTTHHHHHHHHHHHHCSG-GGHHHHHHHHHCTTSCCCCTTBCCSSCS--SCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCccCCHHHHHHHHHHHhcCc-hHHHHHHHHHHhccCCCcccCCCccccC--CCCCcHHHHHHHHHHHHH
Confidence            999999998 999999999999999999866 68999999999955  999999999997  4799999999999987  


Q ss_pred             --CC-CChHHHHHHHHHHHHhhc----cCCcccchhhHHHHHHHHhccCCCCCchhhhHHHHhhhhcchhhhhhhhhhhh
Q 014132          333 --FP-SVKYMEYAVQVETYTLSK----ANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIGLI  405 (430)
Q Consensus       333 --~~-~~~~~~~a~~~e~~~~~~----~~~l~~Nvd~~~a~l~~~lG~~~~~ft~~e~~~~~p~~~~~~lf~~~R~~Gwi  405 (430)
                        +. ++++++++.++|+++.++    .|+++||||||+|+++++||||.+|||+              ||++||++||+
T Consensus       336 ~~g~~~~~~~~la~~lE~~al~~~~~~~k~l~pNVDfysg~i~~~lGiP~~~ft~--------------lFaisR~~GW~  401 (436)
T 2h12_A          336 ELGIKDDPLLDLAVELEKIALSDDYFVQRKLYPNVDFYSGIILKAMGIPTSMFTV--------------LFAVARTTGWV  401 (436)
T ss_dssp             HTTCCCCHHHHHHHHHHHHHHHSHHHHHTTCCBCTHHHHHHHHHHTTCCGGGHHH--------------HHHHHHHHHHH
T ss_pred             HhCCCCCHHHHHHHHHHHHHHhhhhccccCCCcChHHHHHHHHHHhCCChhhhhh--------------hhhhhccccHH
Confidence              32 689999999999997654    5999999999999999999999999998              99999999999


Q ss_pred             hhHHHhhhhc-CCCCCC
Q 014132          406 GHTFDQKRLK-QPLYRH  421 (430)
Q Consensus       406 AH~~Eq~~~~-~P~~r~  421 (430)
                      |||+||+..+ ..|.||
T Consensus       402 AH~~Eq~~~~~~kI~RP  418 (436)
T 2h12_A          402 SQWKEMIEEPGQRISRP  418 (436)
T ss_dssp             HHHHHHHHSTTCCCCCC
T ss_pred             HHHHHHHhCCCCceecc
Confidence            9999999654 346666
>3msu_A Citrate synthase; helix bundle, APHA-beta fold, csgid, center for structural G of infectious diseases, transferase; HET: OAA; 1.84A {Francisella tularensis} Back     alignment and structure
>3l96_A Citrate synthase; quaternary, hexamer, GRAM-negative bacteri allostery, oxaloacetate, acetylcoa, NADH, allosteric enzyme transferase; 1.90A {Escherichia coli} SCOP: a.103.1.1 PDB: 3l97_A* 3l98_A* 3l99_A 1k3p_A 1nxe_A 1nxg_A* 1owb_A* 1owc_A 4e6y_A Back     alignment and structure
>2p2w_A Citrate synthase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; HET: FLC; 1.90A {Thermotoga maritima} Back     alignment and structure
>1vgm_A 378AA long hypothetical citrate synthase; open form, transferase; 2.00A {Sulfolobus tokodaii} Back     alignment and structure
>2c6x_A Citrate synthase 1; tricarboxylic acid cycle, transferase, allosteric enzyme, enzyme thermostability; HET: COZ CIT; 3.4A {Bacillus subtilis} Back     alignment and structure
>3hwk_A Methylcitrate synthase; niaid, ssgcid, structural genomics, seattle structural genomics center for infectious disease, tubercluosis; 2.30A {Mycobacterium tuberculosis} Back     alignment and structure
>1o7x_A Citrate synthase; lyase, tricarboxylic acid cycle; 2.7A {Sulfolobus solfataricus} SCOP: a.103.1.1 Back     alignment and structure
>1iom_A Citrate synthase; open form, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.50A {Thermus thermophilus} SCOP: a.103.1.1 PDB: 1ixe_A* Back     alignment and structure
>1aj8_A Citrate synthase; hyperthermostable, lyase; HET: COA CIT; 1.90A {Pyrococcus furiosus} SCOP: a.103.1.1 Back     alignment and structure
>1csh_A Citrate synthase; lyase(OXO-acid); HET: AMX; 1.65A {Gallus gallus} SCOP: a.103.1.1 PDB: 1amz_A* 1csi_A* 1csr_A* 1css_A* 1al6_A* 6csc_A* 2cts_A* 3enj_A 1cts_A 4cts_A 1csc_A* 2csc_A* 3csc_A* 4csc_A* 5csc_A 5cts_A* 6cts_A* 5csc_B Back     alignment and structure
>3tqg_A 2-methylcitrate synthase; energy metabolism, transferase; 2.30A {Coxiella burnetii} SCOP: a.103.1.0 Back     alignment and structure
>1vgp_A 373AA long hypothetical citrate synthase; open form, transferase; 2.70A {Sulfolobus tokodaii} Back     alignment and structure
>1a59_A Citrate synthase; cold-activity; HET: COA CIT; 2.09A {Antarctic bacterium ds2-3r} SCOP: a.103.1.1 Back     alignment and structure
>3o8j_A 2-methylcitrate synthase; short chain fatty acids, propionate metabolism, 2-methylcitr cycle, PRPC or 2-MCS, GLTA or CS, 2-methy synthase; 2.41A {Salmonella enterica} Back     alignment and structure
>2ifc_A Citrate synthase; oxaloacetate, EC 2.3.3.1, transferase; 1.70A {Thermoplasma acidophilum} PDB: 2r9e_A* 2r26_A* Back     alignment and structure
>2ibp_A Citrate synthase; disulfide bond, homodimer, thermophilic, C transferase; 1.60A {Pyrobaculum aerophilum} Back     alignment and structure
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B* Back     alignment and structure
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens} Back     alignment and structure
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix} Back     alignment and structure
>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A* Back     alignment and structure
>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 Back     alignment and structure
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii} Back     alignment and structure
>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* Back     alignment and structure
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1 Back     alignment and structure
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli} Back     alignment and structure
>3tqg_A 2-methylcitrate synthase; energy metabolism, transferase; 2.30A {Coxiella burnetii} SCOP: a.103.1.0 Back     alignment and structure
>3o8j_A 2-methylcitrate synthase; short chain fatty acids, propionate metabolism, 2-methylcitr cycle, PRPC or 2-MCS, GLTA or CS, 2-methy synthase; 2.41A {Salmonella enterica} Back     alignment and structure
>3hwk_A Methylcitrate synthase; niaid, ssgcid, structural genomics, seattle structural genomics center for infectious disease, tubercluosis; 2.30A {Mycobacterium tuberculosis} Back     alignment and structure
>1vgp_A 373AA long hypothetical citrate synthase; open form, transferase; 2.70A {Sulfolobus tokodaii} Back     alignment and structure
>2p2w_A Citrate synthase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; HET: FLC; 1.90A {Thermotoga maritima} Back     alignment and structure
>1iom_A Citrate synthase; open form, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.50A {Thermus thermophilus} SCOP: a.103.1.1 PDB: 1ixe_A* Back     alignment and structure
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus} Back     alignment and structure
>2h12_A Citrate synthase; acidophIle, acetic acid resistance, allostery, transferase; HET: CMX; 1.85A {Acetobacter aceti} Back     alignment and structure
>3l96_A Citrate synthase; quaternary, hexamer, GRAM-negative bacteri allostery, oxaloacetate, acetylcoa, NADH, allosteric enzyme transferase; 1.90A {Escherichia coli} SCOP: a.103.1.1 PDB: 3l97_A* 3l98_A* 3l99_A 1k3p_A 1nxe_A 1nxg_A* 1owb_A* 1owc_A 4e6y_A Back     alignment and structure
>1o7x_A Citrate synthase; lyase, tricarboxylic acid cycle; 2.7A {Sulfolobus solfataricus} SCOP: a.103.1.1 Back     alignment and structure
>2c6x_A Citrate synthase 1; tricarboxylic acid cycle, transferase, allosteric enzyme, enzyme thermostability; HET: COZ CIT; 3.4A {Bacillus subtilis} Back     alignment and structure
>1aj8_A Citrate synthase; hyperthermostable, lyase; HET: COA CIT; 1.90A {Pyrococcus furiosus} SCOP: a.103.1.1 Back     alignment and structure
>1a59_A Citrate synthase; cold-activity; HET: COA CIT; 2.09A {Antarctic bacterium ds2-3r} SCOP: a.103.1.1 Back     alignment and structure
>1vgm_A 378AA long hypothetical citrate synthase; open form, transferase; 2.00A {Sulfolobus tokodaii} Back     alignment and structure
>1csh_A Citrate synthase; lyase(OXO-acid); HET: AMX; 1.65A {Gallus gallus} SCOP: a.103.1.1 PDB: 1amz_A* 1csi_A* 1csr_A* 1css_A* 1al6_A* 6csc_A* 2cts_A* 3enj_A 1cts_A 4cts_A 1csc_A* 2csc_A* 3csc_A* 4csc_A* 5csc_A 5cts_A* 6cts_A* 5csc_B Back     alignment and structure
>2ifc_A Citrate synthase; oxaloacetate, EC 2.3.3.1, transferase; 1.70A {Thermoplasma acidophilum} PDB: 2r9e_A* 2r26_A* Back     alignment and structure
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1 Back     alignment and structure
>2ibp_A Citrate synthase; disulfide bond, homodimer, thermophilic, C transferase; 1.60A {Pyrobaculum aerophilum} Back     alignment and structure
>3msu_A Citrate synthase; helix bundle, APHA-beta fold, csgid, center for structural G of infectious diseases, transferase; HET: OAA; 1.84A {Francisella tularensis} Back     alignment and structure
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B* Back     alignment and structure
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B* Back     alignment and structure
>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis} Back     alignment and structure
>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis} Back     alignment and structure
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 430
d1ioma_374 a.103.1.1 (A:) Citrate synthase {Thermus thermophi 3e-23
d1o7xa_367 a.103.1.1 (A:) Citrate synthase {Archaeon Sulfolob 5e-22
d1csha_435 a.103.1.1 (A:) Citrate synthase {Chicken (Gallus g 7e-22
d1aj8a_371 a.103.1.1 (A:) Citrate synthase {Archaeon Pyrococc 2e-18
d1k3pa_426 a.103.1.1 (A:) Citrate synthase {Escherichia coli 2e-18
d1a59a_377 a.103.1.1 (A:) Citrate synthase {Antarctic bacteri 7e-17
d1euca2176 c.23.4.1 (A:131-306) Succinyl-CoA synthetase, alph 8e-15
d2csua2161 c.23.4.1 (A:130-290) Acetate-CoA ligase alpha chai 1e-11
d1oi7a2167 c.23.4.1 (A:122-288) Succinyl-CoA synthetase, alph 2e-11
d2nu7a2166 c.23.4.1 (A:122-287) Succinyl-CoA synthetase, alph 1e-10
>d1ioma_ a.103.1.1 (A:) Citrate synthase {Thermus thermophilus [TaxId: 274]} Length = 374 Back     information, alignment and structure

class: All alpha proteins
fold: Citrate synthase
superfamily: Citrate synthase
family: Citrate synthase
domain: Citrate synthase
species: Thermus thermophilus [TaxId: 274]

 Score = 98.4 bits (244), Expect = 3e-23
 Identities = 44/212 (20%), Positives = 78/212 (36%), Gaps = 18/212 (8%)

Query: 212 WFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTIGPRFG 271
                      + ++  ++L A+HG   S     I       DL S++ + + ++     
Sbjct: 159 ANGVEPSPEQARLMDAALILHAEHGFNAS-TFTAIAAFSTETDLYSAITAAVASLKGPRH 217

Query: 272 GAIDDAARYFKDAYDRGLSAYEFVESMKKKGIRVPGIGHRIKRGDNRDKRV--ELLQKFA 329
           G  ++A             A E+V     K  R+ G+GHR+ +  +    V  +L +  A
Sbjct: 218 GGANEAVMRMIQEIGTPERAREWVREKLAKKERIMGMGHRVYKAFDPRAGVLEKLARLVA 277

Query: 330 RTHFPSVKY-MEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVE 388
             H  S +Y +   V+ E   +     +  NVD   G ++ DL      F          
Sbjct: 278 EKHGHSKEYQILKIVEEEAGKVLNPRGIYPNVDFYSGVVYSDLGFSLEFF---------- 327

Query: 389 IGYLNGLFVLARSIGLIGHTFDQKRLKQPLYR 420
                 +F +AR  G +GH  + + L   L R
Sbjct: 328 ----TPIFAVARISGWVGHILEYQELDNRLLR 355
>d1o7xa_ a.103.1.1 (A:) Citrate synthase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 367 Back     information, alignment and structure
>d1csha_ a.103.1.1 (A:) Citrate synthase {Chicken (Gallus gallus) [TaxId: 9031]} Length = 435 Back     information, alignment and structure
>d1aj8a_ a.103.1.1 (A:) Citrate synthase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 371 Back     information, alignment and structure
>d1k3pa_ a.103.1.1 (A:) Citrate synthase {Escherichia coli [TaxId: 562]} Length = 426 Back     information, alignment and structure
>d1a59a_ a.103.1.1 (A:) Citrate synthase {Antarctic bacterium DS2-3R [TaxId: 56673]} Length = 377 Back     information, alignment and structure
>d1euca2 c.23.4.1 (A:131-306) Succinyl-CoA synthetase, alpha-chain, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 176 Back     information, alignment and structure
>d2csua2 c.23.4.1 (A:130-290) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]} Length = 161 Back     information, alignment and structure
>d1oi7a2 c.23.4.1 (A:122-288) Succinyl-CoA synthetase, alpha-chain, C-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 167 Back     information, alignment and structure
>d2nu7a2 c.23.4.1 (A:122-287) Succinyl-CoA synthetase, alpha-chain, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 166 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query430
d1csha_435 Citrate synthase {Chicken (Gallus gallus) [TaxId: 100.0
d1ioma_374 Citrate synthase {Thermus thermophilus [TaxId: 274 100.0
d1o7xa_367 Citrate synthase {Archaeon Sulfolobus solfataricus 100.0
d1a59a_377 Citrate synthase {Antarctic bacterium DS2-3R [TaxI 100.0
d1k3pa_426 Citrate synthase {Escherichia coli [TaxId: 562]} 100.0
d1aj8a_371 Citrate synthase {Archaeon Pyrococcus furiosus [Ta 100.0
d1oi7a2167 Succinyl-CoA synthetase, alpha-chain, C-terminal d 99.91
d2csua2161 Acetate-CoA ligase alpha chain, AcdA, domains 2 an 99.9
d1euca2176 Succinyl-CoA synthetase, alpha-chain, C-terminal d 99.89
d2nu7a2166 Succinyl-CoA synthetase, alpha-chain, C-terminal d 99.86
d2csua3163 Acetate-CoA ligase alpha chain, AcdA, domains 2 an 95.62
d1o7xa_ 367 Citrate synthase {Archaeon Sulfolobus solfataricus 94.07
d1ioma_ 374 Citrate synthase {Thermus thermophilus [TaxId: 274 93.09
d1aj8a_ 371 Citrate synthase {Archaeon Pyrococcus furiosus [Ta 92.52
d1a59a_ 377 Citrate synthase {Antarctic bacterium DS2-3R [TaxI 92.0
d1k3pa_ 426 Citrate synthase {Escherichia coli [TaxId: 562]} 91.89
d1csha_ 435 Citrate synthase {Chicken (Gallus gallus) [TaxId: 90.8
d1eucb1148 Succinyl-CoA synthetase, beta-chain, C-terminal do 90.0
d2nu7b1150 Succinyl-CoA synthetase, beta-chain, C-terminal do 84.03
>d1csha_ a.103.1.1 (A:) Citrate synthase {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
class: All alpha proteins
fold: Citrate synthase
superfamily: Citrate synthase
family: Citrate synthase
domain: Citrate synthase
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=1.4e-58  Score=476.20  Aligned_cols=336  Identities=19%  Similarity=0.187  Sum_probs=258.2

Q ss_pred             CCccCCCCHHHHHHHhhcCCCcc--------EEEEeeccCChhHHHH--HHHHHcCCCCCCEEEEecCCccccccccccc
Q 014132           24 GDVFPGSTLSDHILRFNNIPQVK--------MMVVLGELGGRDEYSL--VEALKQGKVNKPVVAWVSGTCARLFKSEVQF   93 (430)
Q Consensus        24 gd~i~g~~~~d~l~~l~~Dp~T~--------~Ivl~gE~~~~~E~~~--a~~~~~~~~~KPvv~~~~G~~~~~~p~g~~~   93 (430)
                      |-.|+|.++.|+.+.+.+...-+        ..+++||.|..+|.+.  .++.+.+..+..|..++-..     |..   
T Consensus        61 Gi~YRGy~I~eL~~~l~k~~~~e~~~fEEV~yLLl~GeLPt~~EL~~f~~~L~~~~~lp~~v~~~i~~~-----P~~---  132 (435)
T d1csha_          61 GIRFRGFSIPECQKLLPKAGGGEEPLPEGLFWLLVTGQIPTPEQVSWVSKEWAKRAALPSHVVTMLDNF-----PTN---  132 (435)
T ss_dssp             EEEETTEEHHHHHHHSCBCTTCCSBCHHHHHHHHHHSSCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHS-----CTT---
T ss_pred             ceeECCccHHHHHHHhhcccccccCcHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccchHHHHHHHHhh-----cCC---
Confidence            35799999999999887764322        3588999999887554  23333334555565555333     222   


Q ss_pred             ccccccccCCcCcHHHHHHHHHHCCCcccCChHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCchhhHHHHHhcchhhHH
Q 014132           94 GHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFEKLVEEGKIPPVKEVTPPQIPEDLNTAIKSGKVRAPT  173 (430)
Q Consensus        94 gHagai~~~~~g~~~~k~~~l~~~Gv~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~e~~~~~~~~~~~~~~l~ak~p~i~  173 (430)
                      +|...+...       -..+|...      ++.      .    +....+...    ...| ....+++++++||+|+|+
T Consensus       133 ~hPM~~L~~-------~vsaL~~~------~~~------~----~~~~~~~~~----~~~~-e~~~~~a~~LiAk~P~i~  184 (435)
T d1csha_         133 LHPMSQLSA-------AITALNSE------SNF------A----RAYAEGINR----TKYW-EFVYEDAMDLIAKLPCVA  184 (435)
T ss_dssp             SCHHHHHHH-------HHHHGGGG------CHH------H----HHHHTTCCG----GGHH-HHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHH-------HHHHhhcc------Ccc------c----hhhcccccc----cccH-HHHHHHHHHHHHhhhHHH
Confidence            243332210       11111100      000      0    000111000    0001 122457899999999999


Q ss_pred             HHHHhhccCCCCcccccCCCcchhhhccCCHHHHHHHhhhCCCCchhHHHHHHHHHHHhccCC-CCCcchhHHHHhhccC
Q 014132          174 HIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHG-PCVSGAHNTIVTARAG  252 (430)
Q Consensus       174 a~~~~i~~~~g~~~~~~g~dl~~li~~~~s~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHg-~~~St~~aar~~aSt~  252 (430)
                      +++|+..+..|+++..+..++++       .+||++|+ ++  +++...++||++|||||||| +|+|| |++|+++||+
T Consensus       185 A~~yr~~~~~g~~~~~pd~~ls~-------a~nfl~ml-~~--~~p~~~~~l~~~lil~aDHeg~n~St-~a~rvvaSt~  253 (435)
T d1csha_         185 AKIYRNLYRAGSSIGAIDSKLDW-------SHNFTNML-GY--TDPQFTELMRLYLTIHSDHEGGNVSA-HTSHLVGSAL  253 (435)
T ss_dssp             HHHHHHHHSTTCCCCCCCTTSCH-------HHHHHHHH-TC--CCHHHHHHHHHHHHHTSCCCSCSHHH-HHHHHHHTTT
T ss_pred             HHHHHHHhcCCCCCCCCCCCcCH-------HHHHHHHh-cC--ccHHHHHHHHHHHHHHhhccCCcchH-HHHHHHhccc
Confidence            99999777788899988888877       67788777 43  46778999999999999996 89899 9999999999


Q ss_pred             CChHHHHHHhhhcc-CCCccCchHHHHHHHHHHhc------cCCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCcHHHHHH
Q 014132          253 KDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYD------RGLSAYEFVESMKKKGIRVPGIGHRIKRGDNRDKRVELL  325 (430)
Q Consensus       253 a~~~~av~Agl~a~-Gp~hGGa~~~a~~~l~~~~~------~~~~~~~~v~~~~~~~~~ipGFGH~vy~~~~~DPRa~~L  325 (430)
                      +|+|+|++||++++ ||+||||+++|++||+++.+      ..+++++||++.+++|++|||||||||+  +.|||+++|
T Consensus       254 sd~~sav~agi~al~GplHGGA~~~v~~~l~~i~~~~~~~~~~~~~~~~v~~~l~~~~~i~GfGH~vyk--~~DPRa~~l  331 (435)
T d1csha_         254 SDPYLSFAAAMNGLAGPLHGLANQEVLLWLSQLQKDLGADASDEKLRDYIWNTLNSGRVVPGYGHAVLR--KTDPRYTCQ  331 (435)
T ss_dssp             CCHHHHHHHHHHHHTSTTTTTHHHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHHHTTCCCTTBCCSSCC--SCCHHHHHH
T ss_pred             cchHHHHHHHHHHhccccccchHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCCcccccCccccc--CCCcchHHH
Confidence            99999999999998 99999999999999999843      1246889999999999999999999998  479999999


Q ss_pred             HHHHHHhCCCChHHHHHHHHHHHHhh------ccCCcccchhhHHHHHHHHhccC-CCCCchhhhHHHHhhhhcchhhhh
Q 014132          326 QKFARTHFPSVKYMEYAVQVETYTLS------KANNLVLNVDGAIGSLFLDLLAG-SGMFSKQEIDEIVEIGYLNGLFVL  398 (430)
Q Consensus       326 ~~~~~~~~~~~~~~~~a~~~e~~~~~------~~~~l~~Nvd~~~a~l~~~lG~~-~~~ft~~e~~~~~p~~~~~~lf~~  398 (430)
                      +++++++..++++++++.++++++.+      +.|+++||||||+|++|++|||| .+|||+              +|++
T Consensus       332 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~k~l~pNVD~~sg~~~~~lG~p~~~~~t~--------------lFa~  397 (435)
T d1csha_         332 REFALKHLPSDPMFKLVAQLYKIVPNVLLEQGKAKNPWPNVDAHSGVLLQYYGMTEMNYYTV--------------LFGV  397 (435)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHTCCSCCSBCTHHHHHHHHHHTTCCCGGGHHH--------------HHHH
T ss_pred             HHHHHHHcccCchhHHHHHHHHHHHHHHHHhcccCCCCCCcchHHHHHHHHcCCCchhhHHH--------------HHHH
Confidence            99999999999999999888887632      47899999999999999999997 589998              9999


Q ss_pred             hhhhhhhhhHHHhhhhcCCCCCCC
Q 014132          399 ARSIGLIGHTFDQKRLKQPLYRHP  422 (430)
Q Consensus       399 ~R~~GwiAH~~Eq~~~~~P~~r~~  422 (430)
                      ||++||+|||+||+..+.||.||.
T Consensus       398 sR~~Gw~AH~~Eq~~~~~~i~RP~  421 (435)
T d1csha_         398 SRALGVLAQLIWSRALGFPLERPK  421 (435)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCCCC
T ss_pred             HHHHHHHHHHHHHHhcCCCccCCC
Confidence            999999999999998777898884
>d1ioma_ a.103.1.1 (A:) Citrate synthase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1o7xa_ a.103.1.1 (A:) Citrate synthase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1a59a_ a.103.1.1 (A:) Citrate synthase {Antarctic bacterium DS2-3R [TaxId: 56673]} Back     information, alignment and structure
>d1k3pa_ a.103.1.1 (A:) Citrate synthase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1aj8a_ a.103.1.1 (A:) Citrate synthase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1oi7a2 c.23.4.1 (A:122-288) Succinyl-CoA synthetase, alpha-chain, C-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2csua2 c.23.4.1 (A:130-290) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1euca2 c.23.4.1 (A:131-306) Succinyl-CoA synthetase, alpha-chain, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2nu7a2 c.23.4.1 (A:122-287) Succinyl-CoA synthetase, alpha-chain, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1o7xa_ a.103.1.1 (A:) Citrate synthase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1ioma_ a.103.1.1 (A:) Citrate synthase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1aj8a_ a.103.1.1 (A:) Citrate synthase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1a59a_ a.103.1.1 (A:) Citrate synthase {Antarctic bacterium DS2-3R [TaxId: 56673]} Back     information, alignment and structure
>d1k3pa_ a.103.1.1 (A:) Citrate synthase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1csha_ a.103.1.1 (A:) Citrate synthase {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1eucb1 c.23.4.1 (B:246-393) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2nu7b1 c.23.4.1 (B:239-388) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure