Citrus Sinensis ID: 014150

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430
Protein Sequence
MKXREPPKFPCKLETELDRLSSLPAHVIDQILSQLPIRDAVRTSVLSKKWRYKWATVPHLVFDNHCVSTSSQDQTFIKNKLVNIVDHVLLLHNGPILKFKLSHRDLLGVSDIDRWILYMSRSCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNFWEVDHWTSLFSQLRMVKIVGISGIRSELEFIKFVLSNSPVLETMTIKPASLEGGWDLIKELLRFRRASARAEIIYLDPQLQ
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccHHHHHHHHccccHHHHHHHHHHHHHcccccccccccEEEccccccccccHHHHHHHHHHHHHHHHHcccccEEEEEEEEccccccccHHHHHHHHHHccccEEEEEEcccccccccccccccccccEEEEEcEEEcccccccccccccEEEEEEEEEcccHHHHHHHccccccEEEEEEEcccEEEEEEcccEEEEEEEEEEccEEEEEccccEEEEEEEEEccccccccccccHHHHHHHHHcccccEEEEEEcEEEEEEEEcccccccccccccEEEEEEEEEccccHHHHHHHHHHHHcccccEEEEEEEccccccccccccccccccccccccccEEEEEEEEccHHHHHHHHHHHHccccccEEEEEEcccccHHHHHHHHHcccccccccEEEEEccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccHccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccEEccccccccccccHHHHHHHHHHHHHHHHHccccEEEEEEEEcccccHHHHHHHHHHHHHccccEEEEEEcccccccccccEEEcccEEEEEEEcEEccccccccccHcHcEEEEEEEEEcHHHHHHHHHcccHHHEEEEEEccccEEEEEEcccEEEEEEEcccccEEEEcccccEEEEEEEcccccccccccccccHHHHHHHHcccccEEEEEccHHHHHHHccccccccccccEEEEEEEEEEEcccHHHHHHHHHHHHcccccEEEEEEEcccccccccccccccccccHHHHccEEEEEEEcccccHHHHHHHHHHHHHcHHHcEEEEEEcccccHHHHHHHHHHccccccccEEEEEccccc
Coil and Loop (DISEMBL)
mkxreppkfpckleteldrlsslpaHVIDQILSQLPIRDAVRTSVlskkwrykwatvphlvfdnhcvstssqDQTFIKNKLVNIVDHVLllhngpilkfklshrdllgvsdiDRWILYMSRSCVKEFILEIwkgqrykvpsslfLCQNLIHLELfncllkppstfkgfrnlksldlqHITLSQDVFENlisssptlerltlmnfdgfthlnidapnlqffdiggvfddvtfENTFHLALVSIGLyvnvkndqamgpgnsCKLLRFfvhlphirRLEIQSYFLKYLaignvpsrlprpcvdlnylsIRINFNDLEENLAALCLlrsspnlqelemlarpeetgigvltnfwevDHWTSLFSQLRMVKIVGISGIRSELEFIKFvlsnspvletmtikpaslEGGWDLIKELLRFRRASARAEIIYLDPQLQ
Flexible Loop (DISEMBL)
mkxreppkfpCKLETELDRLSSLPAHVIdqilsqlpirdAVRTSVLSKKWRYKWATVPHLVFDNHCVSTSSQDQTFIKNKLVNIVDHVLLLHNGPILKFKLSHRDLLGVSDIDRWILYMSRSCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNFWEVDHWTSLFSQLRMVKIVGISGIRSELEFIKFvlsnspvletmtikpaslegGWDLIKELLRFRRASAraeiiyldpqlQ
Low Complexity Region (SEG)
MKxREPPKFPCKLETELDRLSSLPAHVIDQILSQLPIRDAVRTSVLSKKWRYKWATVPHLVFDNHCVSTSSQDQTFIKNKLVNIVDHVLLLHNGPILKFKLSHRDLLGVSDIDRWILYMSRSCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNFWEVDHWTSLFSQLRMVKIVGISGIRSELEFIKFVLSNSPVLETMTIKPASLEGGWDLIKELLRFRRASARAEIIYLDPQLQ
Disordered region (IsUnstruct)
******************RLSSLPAHVIDQILSQLPIRDAVRTSVLSKKWRYKWATVPHLVFDNHCVSTSSQDQTFIKNKLVNIVDHVLLLHNGPILKFKLSHRDLLGVSDIDRWILYMSRSCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNFWEVDHWTSLFSQLRMVKIVGISGIRSELEFIKFVLSNSPVLETMTIKPASLEGGWDLIKELLRFRRASARAEIIYL*****
Disordered Region (DISOPRED)
*********************SLPAHVIDQILSQLPIRDAVRTSVLSKKWRYKWATVPHLVFDNHCVSTSSQDQTFIKNKLVNIVDHVLLLHNGPILKFKLSHRDLLGVSDIDRWILYMSRSCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVL***WE**HWTSLFSQLRMVKIVGISGIRSELEFIKFVLSNSPVLETMTIKPASLEGGWDLIKELLRFRRASARAEIIYLDPQL*
Disordered Region (DISEMBL)
MKXREPPKFPCKLETELDRLSSLPAHVIDQILSQLPIRDAVRTSVLSKKWRYKWATVPHLVFDNHCVSTSSQDQTFIKNKLVNIVDHVLLLHNGPILKFKLSHRDLLGVSDIDRWILYMSRSCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNFWEVDHWTSLFSQLRMVKIVGISGIRSELEFIKFVLSNSPVLETMTIKPASLEGGWDLIKELLRFRRASARAEIIYLDPQLQ
Disordered Region (DISPRO)
*****************DRLSSLPAHVIDQILSQLPIRDAVRTSVLSKKWRYKWATVPHLVFDNHCVSTSSQDQTFIKNKLVNIVDHVLLLHNGPILKFKLSHRDLLGVSDIDRWILYMSRSCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNFWEVDHWTSLFSQLRMVKIVGISGIRSELEFIKFVLSNSPVLETMTIKPASLEGGWDLIKELLRFRRASARAEIIYLDPQ**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKXREPPKFPCKLETELDRLSSLPAHVIDQILSQLPIRDAVRTSVLSKKWRYKWATVPHLVFDNHCVSTSSQDQTFIKNKLVNIVDHVLLLHNGPILKFKLSHRDLLGVSDIDRWILYMSRSCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNFWEVDHWTSLFSQLRMVKIVGISGIRSELEFIKFVLSNSPVLETMTIKPASLEGGWDLIKELLRFRRASARAEIIYLDPQLQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	430	2.2.26 [Sep-21-2011]
Q9FZ70	416	F-box/FBD/LRR-repeat prot	yes	no	0.930	0.961	0.419	6e-80
Q9LQM1	422	Probable FBD-associated F	no	no	0.881	0.898	0.268	7e-22
Q9ZV94	452	Putative F-box/FBD/LRR-re	no	no	0.906	0.862	0.264	8e-22
Q9FGQ3	444	F-box/FBD/LRR-repeat prot	no	no	0.9	0.871	0.282	1e-20
Q9FNI8	466	FBD-associated F-box prot	no	no	0.9	0.830	0.265	2e-19
Q9FM94	421	FBD-associated F-box prot	no	no	0.897	0.916	0.260	6e-19
Q6DBN6	435	F-box/FBD/LRR-repeat prot	no	no	0.893	0.882	0.269	5e-18
Q9FM89	422	F-box/FBD/LRR-repeat prot	no	no	0.546	0.556	0.278	1e-17
Q3EA38	427	Putative F-box/FBD/LRR-re	no	no	0.855	0.861	0.270	2e-17
Q9FGR8	408	Putative FBD-associated F	no	no	0.827	0.872	0.271	5e-17

>sp|Q9FZ70|FDL1_ARATH F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana GN=At1g13570 PE=2 SV=1

 Score =  298 bits (763), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 175/417 (41%), Positives = 256/417 (61%), Gaps = 17/417 (4%)

Query: 18  DRLSSLPAHVIDQILSQLPIRDAVRTSVLSKKWRYKWATVPHLVFDNHCVSTSSQDQTFI 77
           D +S LP  +I+ IL++L IRDA+RTSVLS KWRYKW+T+  LVFD  CVS S+ D+  +
Sbjct: 6   DFISDLPQSIIENILTRLSIRDAIRTSVLSSKWRYKWSTLTDLVFDEKCVSPSN-DRCVV 64

Query: 78  KNKLVNIVDHVLLLHNGPILKFKLSHRDLLGVSDIDRWILYMSRSCVKEFILEIWKGQRY 137
           +  LV  +  VLLLH GPI KF+LS        DID+W+L++SR+ +KE +L++ +G+ +
Sbjct: 65  ETNLVRFITGVLLLHQGPIHKFQLSTSFKQCRPDIDQWLLFLSRNGIKELVLKLGEGE-F 123

Query: 138 KVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLE 197
           +VP+ LF C  L  LEL +C   PP  FKGF  LKSL+L  I ++ +V E+LIS  P LE
Sbjct: 124 RVPACLFNCLKLTCLELCHCEFDPPQYFKGFSYLKSLNLHQILVAPEVIESLISGCPLLE 183

Query: 198 RLTLMNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPG 257
            L+L  FD    L+I APNL +  + G F D+  ENT  L  +S+ +Y++ ++       
Sbjct: 184 FLSLSYFDSLV-LSISAPNLMYLYLDGEFKDIFLENTPKLVAISVSMYMH-EDVTDFEQS 241

Query: 258 NSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSI-RINFNDLEEN 316
           +   L++F   +P + +L    YF KYL+IG+ P RLP   + L  + + ++ F D +E 
Sbjct: 242 SDYNLVKFLGGVPLLEKLVGYIYFTKYLSIGDDPGRLPLTYIHLKTIELYQVCFEDADEV 301

Query: 317 LAALCLLRSSPNLQELEMLARP------EETGIGVLTNFWEVDHWTSLFSQLRMVKIVGI 370
           L  L L+  SPNL+EL++ A P      EE G     + +E D++      L  VKI   
Sbjct: 302 LVLLRLVTHSPNLKELKVSASPVQPFPLEEEGF----DLFERDYFDYKLPSLESVKITDA 357

Query: 371 SGIRSELEFIKFVLSNSPVLETMTIKP--ASLEGGWDLIKELLRFRRASARAEIIYL 425
           SGIR ELEFI+F+L  SPVLET+T+    +  +   D++ ELLR+ R S RA++++L
Sbjct: 358 SGIRYELEFIRFLLGTSPVLETVTVSSSLSDKDAKMDMVIELLRYPRVSPRAQLLFL 414

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQM1|FBD39_ARATH Probable FBD-associated F-box protein At1g32375 OS=Arabidopsis thaliana GN=At1g32375 PE=4 SV=2

 Score =  105 bits (262), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 117/435 (26%), Positives = 187/435 (42%), Gaps = 56/435 (12%)

Query: 17  LDRLSSLPAHVIDQILSQLPIRDAVRTSVLSKKWRYKWATVPHLVFDNHCVSTSSQDQTF 76
           +D+LS LP  ++ +ILS L  +D V T VLSK+W++ W  VP L++D+         Q  
Sbjct: 1   MDKLSQLPEALLVRILSLLSAKDVVSTMVLSKRWQFLWMLVPKLIYDD-------SYQAI 53

Query: 77  IKNKLVNIVDHVLLLHNGPILK---FKLSHRDLLGVSDIDRWILYMSRSCVKEFILEIWK 133
                   VD    LH+  +L    FKL  +   G  DI  WI    +SC++E I+EI K
Sbjct: 54  EYGSFSRFVDRSFTLHDAQVLDTLHFKLG-KTSCGTGDIRVWIKTAEKSCLRELIIEIDK 112

Query: 134 G----QRYKVPSSLF-LCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQD-VFE 187
                    +P SL+  C+ L+ L+L N +L   ++   F +LK+L L  +    D + +
Sbjct: 113 SNSDNSSVVLPRSLYTCCRMLVTLKLNNAVLVDATSSFSFPSLKTLSLVSMKFPGDELIK 172

Query: 188 NLISSSPTLERLTLMN--FDGFTHLNIDAPNLQFF------------DIGGVFDDVTFEN 233
            L+S+ P LE L +    +D  T   +   +L+              D G V D  + E 
Sbjct: 173 MLLSNCPVLEDLVVKRCPYDNVTTFTVRVSSLKCLVLHETELASINADCGFVIDTPSLE- 231

Query: 234 TFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSR 293
              +     G  V   N   +   N C     +VH   +    I S    Y+ I +  S+
Sbjct: 232 CLDIEDGRGGFCVIENNMTKVVKANVCN---SYVHTQQLMG-SISSVKRLYVCIPS--SK 285

Query: 294 LPRPCVDLNYLSIRINFNDLEENLAAL--CLLRSSPNLQELEMLARPEETGIGVLTNFWE 351
              P   + +  +R+     E     L  C+LR SP L+EL+++         V  +   
Sbjct: 286 DAYPVGSVFHCLVRLTICTCETEWLNLLMCVLRDSPKLRELKLVKN------HVYRSHQP 339

Query: 352 VDHWT-------SLFSQLRMVKIVGISGIRSELEFIKFVLSNSPVLETMTI--KPASLEG 402
              W         L + L  ++ V   G   E E   F+L +   L+ +TI  K   +  
Sbjct: 340 RPCWNEPSAVPECLLTSLETLEWVKYEGTEEEKEVAAFILRSGSCLKKVTISSKSTDINK 399

Query: 403 GWDLIKEL-LRFRRA 416
            ++++KEL L FRR+
Sbjct: 400 KFEMLKELSLLFRRS 414

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZV94|FDL11_ARATH Putative F-box/FBD/LRR-repeat protein At1g78760 OS=Arabidopsis thaliana GN=At1g78760 PE=4 SV=1

 Score =  105 bits (261), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 121/458 (26%), Positives = 211/458 (46%), Gaps = 68/458 (14%)

Query: 15  TELDRLSSLPAHVIDQILSQLPIRDAVRTSVLSKKWRYKWATVPHLVFDNHCVSTSSQDQ 74
           +E DRLS+LP  +I QI+  +P +D V++SVLSK+WR  W  VP L  +         +Q
Sbjct: 13  SEEDRLSNLPESLICQIMLNIPTKDVVKSSVLSKRWRNLWRYVPGLNVE--------YNQ 64

Query: 75  TFIKNKLVNIVDHVLLLHNGPILK-FKLSH---RDLLGVSDIDRWILYMSRSCVKEFILE 130
               N  V+ VD  L L      + F+L +    +   +S++ RWI  +    +K  +L+
Sbjct: 65  FLDYNAFVSFVDRFLALDRESCFQSFRLRYDCDEEERTISNVKRWINIVVDQKLK--VLD 122

Query: 131 I----WKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQD-V 185
           +    W  +  ++P S++ C++L+ L+L N +L  P        +K ++L  +  S   V
Sbjct: 123 VLDYTWGNEEVQIPPSVYTCESLVSLKLCNVILPNPKVI-SLPLVKVIELDIVKFSNALV 181

Query: 186 FENLISSSPTLERL------------------TLMNF-------DGFTHLN--IDAPNLQ 218
            E +ISS   LE L                  +L++F       DG+  L   IDAP L+
Sbjct: 182 LEKIISSCSALESLIISRSSVDDINVLRVSSRSLLSFKHIGNCSDGWDELEVAIDAPKLE 241

Query: 219 FFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCK---LLRFFVHLPHIRRL 275
           + +I        F+     +LV   + +    ++   P +  K   +  F   +  +++L
Sbjct: 242 YLNISD-HSTAKFKMKNSGSLVEAKINIIFNMEELPHPNDRPKRKMIQDFLAEISSVKKL 300

Query: 276 EIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQEL--E 333
            I S+ L+   I ++   LP   +  N  S+ I+F D    + +   L+S PN++ L  E
Sbjct: 301 FISSHTLE--VIHDLGCELP---LFRNLSSLHIDFEDHTLKMLST-FLQSCPNVKSLVVE 354

Query: 334 MLARPEETGIGVLTNFWEVDHWTSLFSQLRMVKIVG-ISGIRSELEFIKFVLSNSPVLET 392
                +E G  VL+           F+ L  VKI   I+G    ++ + ++L NSP+L+ 
Sbjct: 355 FKDSSKEDGDRVLS------IPRCFFTTLEYVKIERPITGEARGMKVVSYILENSPILKK 408

Query: 393 MTIK-PASLEGGWDLI-KELLRFRRASARAEIIYLDPQ 428
           + +   +S E    +I KELL   R S   +++  +P+
Sbjct: 409 LNLCLNSSREKSESVILKELLTIPRLSTSCKVVVFEPR 446

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FGQ3|FDL37_ARATH F-box/FBD/LRR-repeat protein At5g53840 OS=Arabidopsis thaliana GN=At5g53840 PE=2 SV=1

 Score =  101 bits (252), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 126/446 (28%), Positives = 195/446 (43%), Gaps = 59/446 (13%)

Query: 15  TELDRLSSLPAHVIDQILSQLPIRDAVRTSVLSKKWRYKWATVPHLVFDNHCVSTSSQDQ 74
           +E +RLS LP H+I  ILS L  +DAVRTS+LS +WR  W  VP L FD      S + +
Sbjct: 15  SEEERLSQLPDHLICVILSHLSTKDAVRTSILSTRWRNLWQLVPVLDFD------SRELR 68

Query: 75  TFIKNKLVNIVDHVLLLH-NGPILKFKLSHRDLLGVSDIDRWILYMSRSCVKEFILEIWK 133
           +F  ++ V+       LH +  I K ++   DL G   +  WI  ++R  ++   + ++ 
Sbjct: 69  SF--SEFVSFAGSFFYLHKDSYIQKLRVCIYDLAGNYYLTSWIDLVTRHRIQHIDISVFT 126

Query: 134 GQRYKV-PSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQD-VFENLIS 191
              + V P SL+ C  L+HL+L    +     F     LK LDL  +  + +   + +IS
Sbjct: 127 CSGFGVIPLSLYTCDTLVHLKLSRVTMVNVE-FVSLPCLKILDLDFVNFTNETTLDKIIS 185

Query: 192 SSPTLERLTLMN------------------------FDGFTHLNIDAPNLQFFDIGG-VF 226
            SP LE LT++                         FD    L ID P LQF  I     
Sbjct: 186 CSPVLEELTIVKSSEDNVKIIQVRSQTLKRVEIHRRFDRHNGLVIDTPLLQFLSIKAHSI 245

Query: 227 DDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLA 286
             + F N      V I + +   ND +    N      FF  +  +R L I+   +K + 
Sbjct: 246 KSIEFINLGFTTKVDIDVNLLDPNDLS----NRSMTRDFFTTISRVRSLVIRHGTIKDIF 301

Query: 287 IGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVL 346
                  L + C  L+ LS   + ++LE     L LL+S P L+ L +     E      
Sbjct: 302 HYMELEPLQQFCY-LSELSAVCSISNLE---MLLNLLKSCPKLESLSLKLVDYEKN---- 353

Query: 347 TNFWEVDHWT----SLFSQLRMVKIVG-ISGIRSELEFIKFVLSNSPVLETMTIKPASL- 400
               EV   T     L S L+ VK+   + G  +EL+  ++ L NS +LE +T+K   + 
Sbjct: 354 -KKEEVMSSTVPPPCLVSSLKFVKLESQLLGCGTELKVARYFLENSTILEKLTLKIDYMY 412

Query: 401 --EGGWDLIKELLR-FRRASARAEII 423
             E   + I++ L    R S+  E++
Sbjct: 413 KDEANVNHIRQTLHAVPRCSSTCEVV 438

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FNI8|FBD32_ARATH FBD-associated F-box protein At5g22730 OS=Arabidopsis thaliana GN=At5g22730 PE=2 SV=2

 Score = 97.1 bits (240), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 121/456 (26%), Positives = 208/456 (45%), Gaps = 69/456 (15%)

Query: 18  DRLSSLPAHVIDQILSQLPIRDAVRTSVLSKKWRYKWATVPHLVFDNHCVSTSSQDQTFI 77
           D +S LP  +I QIL  LPI+D VRTS LS +W+  W  +P L  D+      +    F+
Sbjct: 28  DLISKLPDSLITQILLYLPIKDIVRTSSLSSRWKSLWLLIPRLDLDSEEFQDYNAFVGFM 87

Query: 78  KNKLVNIVDHVLLLHNGPILKFKLSHRDLLG-VSDIDRWILYMSRSCVKEFILEIWKGQR 136
            NK ++      +  +    K KLS R  +  +  + RWI ++ R  +K   +E    ++
Sbjct: 88  -NKFIDFSGEEKICLD----KLKLSSRKTVNDLPCVTRWIDFVVRRKLKHLDVECLVNRK 142

Query: 137 Y--KVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQD-VFENLISSS 193
           +  ++P SL++C  L++L L   LL           LK++ L+    + D V E+LISS 
Sbjct: 143 FLEEMPLSLYVCDTLVNLRLHRVLLGKFEAV-SLPCLKTMRLEENVYANDVVLESLISSC 201

Query: 194 PTLERLTLM------------------------NF-------DGF----THLNIDAPNLQ 218
           P L+ L ++                        NF       DGF    + + IDAP L+
Sbjct: 202 PVLKDLIILRMFEDNVKVLRVHSLTLTSLNIDFNFGEGDDFVDGFDKKVSGVLIDAPRLK 261

Query: 219 FFDIGGVFDDVT----FENTFHLALVSIGLYVNVKNDQA--MGPGNSCKLLRFFVHLPHI 272
           +       DD++      N+  LA V++ +YV  +ND A  +       +  F   +  +
Sbjct: 262 YLKFQ---DDLSGSKIITNSGSLAKVNV-VYVFNENDCADVVDIPRRNMVRNFLTSISGV 317

Query: 273 RRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQEL 332
             ++I  +F+++L        LP+ C +L+ L   I+   LE       +L S PNL+ L
Sbjct: 318 SDMKISQHFVEFLYYYKDFDPLPQFC-NLSRLKAEISLYFLE---ILPTILESCPNLKSL 373

Query: 333 EMLAR---PEETGIGVLTNFWEVDHWTSLFSQLRMVKIVGISGIRSELEFIKFVLSNSPV 389
            M+      EE    + ++         L S L  V+I   +G  +++E  ++ L NS V
Sbjct: 374 VMVLEFYLQEEDEPIIFSSVPR-----CLVSSLESVEIKKFNGRPAKMEVARYFLENSGV 428

Query: 390 LETMT--IKPASLEGGWDLIKELLRFRRASARAEII 423
           L+ +   ++ ++ E G+ ++K+LL   R S+   I+
Sbjct: 429 LQKLVLHLRCSTHEDGFYILKDLLALPRGSSTCRIV 464

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FM94|FBD21_ARATH FBD-associated F-box protein At5g56370 OS=Arabidopsis thaliana GN=At5g56370 PE=2 SV=1

 Score = 95.9 bits (237), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 115/442 (26%), Positives = 186/442 (42%), Gaps = 56/442 (12%)

Query: 17  LDRLSSLPAHVIDQILSQLPIRDAVRTSVLSKKWRYKWATVPHLVFDNHCVSTSSQDQTF 76
           +D +S LP   + +ILS LP +D + TSVLSK+WRY W  VP L +       S  D+  
Sbjct: 1   MDSISLLPDDFLLRILSLLPTKDVLNTSVLSKRWRYLWKLVPKLQY-------SLIDKNA 53

Query: 77  IKNKLVNIVDHVLLLHNGPILK---FKLSHRDLLGVSDIDRWILYMSRS--CVKEFILEI 131
                V  VD  LLL   P+L+    KL  +      DI  W+        C  +F  E 
Sbjct: 54  DHGTFVRFVDRSLLLSMAPVLESLHLKLGRQ--CSEVDIGFWVRIAVEKGLCELDFDYEH 111

Query: 132 WKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHIT-LSQDVFENLI 190
           +K +  ++P SLF C  L  L+L N  LK       F+ LK+L L+++  L ++  + L+
Sbjct: 112 YKTEPCRLPQSLFTCGTLTVLKLKNVSLKDVQFPVCFKLLKTLHLEYVIFLDKETPQKLL 171

Query: 191 SSSPTLERLTLMN----FDGFTHLNIDAPNLQ-FFDIGGVFDDVTFENTF--HLALVSIG 243
           SS P LE   L       D     ++  P+LQ F   GG   ++        +L L   G
Sbjct: 172 SSCPILEVFDLTRDDDDVDNVMSFSVMVPSLQRFIYCGGSGAELVMNTPSLKYLKLSGCG 231

Query: 244 LYVNVKNDQAMGPGN---SCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVD 300
               + N   +   +   +C        L  ++RL +       L  G +  +L      
Sbjct: 232 YECMIGNLPEIVEAHVEVACSTDDILTSLASVKRLLLCLPTEPELPTGTIFHQLEH---- 287

Query: 301 LNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNFWEVDHW----- 355
           L + S    ++ L      + +L+ SP L+ L++    E  G  +++    + HW     
Sbjct: 288 LEFCSCCTEWDIL------MFMLKHSPKLRSLKL---NETHGYTIVSQSDPMFHWEEPSS 338

Query: 356 --TSLFSQLRMVKIVGISGIRSELEFIKFVLSNSPVLETMTIKPASLEG----------- 402
              +L   L  ++     G++ E E   F+L +S  L+  T  PA  +            
Sbjct: 339 VPETLMFVLETLEWRNYRGLKMENELASFLLKHSRRLKIATFSPADCKQVRIELRTTVGM 398

Query: 403 GWDLIKELLRFRRASARAEIIY 424
            + ++ EL R  R SA  E+++
Sbjct: 399 KYRILMELARLPRGSAECELVF 420

Arabidopsis thaliana (taxid: 3702)

>sp|Q6DBN6|FDL6_ARATH F-box/FBD/LRR-repeat protein At1g51370 OS=Arabidopsis thaliana GN=At1g51370 PE=2 SV=1

 Score = 92.4 bits (228), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 122/453 (26%), Positives = 193/453 (42%), Gaps = 69/453 (15%)

Query: 12  KLETELDRLSSLPAHVIDQILSQLPIRDAVRTSVLSKKWRYKWATVPHLVFDNHCVSTSS 71
           K+  E DR+S LP  +I +IL  L  +D+VRTS LS KWRY W +VP L  D +  S + 
Sbjct: 13  KVSHEEDRISQLPEPLISEILFHLSTKDSVRTSALSTKWRYLWQSVPGLDLDPYASSNT- 71

Query: 72  QDQTFIKNKLVNIVDHVLLLHNGP-ILKFKLS---HRDLLGVSDIDRWILYMSRSCVKEF 127
                  N +V+ V+     H    I K +L    H D     D+  WI   +   ++  
Sbjct: 72  -------NTIVSFVESFFDSHRDSWIRKLRLDLGYHHDKY---DLMSWIDAATTRRIQH- 120

Query: 128 ILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITL-SQDVF 186
            L++      K+P S++ C  L+HL L   +L  P  F     LK +  ++++  ++   
Sbjct: 121 -LDVHCFHDNKIPLSIYTCTTLVHLRLRWAVLTNPE-FVSLPCLKIMHFENVSYPNETTL 178

Query: 187 ENLISSSPTLERLTLMN--FDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGL 244
           + LIS SP LE L L +  +     L + +  L+  DI    D V +     L  +   +
Sbjct: 179 QKLISGSPVLEELILFSTMYPKGNVLQLRSDTLKRLDINEFIDVVIYAPL--LQCLRAKM 236

Query: 245 YVNVKNDQAMGPGNSCKLLRFFVH-----------------LPHIRRLEIQSYFLKYLAI 287
           Y + KN Q +  G   KL   FV+                 +  +R L I S   K   +
Sbjct: 237 Y-STKNFQIISSGFPAKLDIDFVNTGGRYQKKKVIEDILIDISRVRDLVISSNTWKEFFL 295

Query: 288 GNVPSRLPRPCVDLNYLS---IRINFNDLEENLAALCLLRSSPNLQE--LEML------- 335
            +      RP +   Y+S    R   +DLE       LL S P L+   LEM+       
Sbjct: 296 YSK----SRPLLQFRYISHLNARFYISDLE---MLPTLLESCPKLESLILEMVKNQSTRR 348

Query: 336 -ARPEETGIGVLTNFWEVDHWTSLFSQLRMVKIV-GISGIRSELEFIKFVLSNSPVLETM 393
                E  + V T  W       L S L+ V++   I     E+E +++VL+NS VL+ +
Sbjct: 349 HGEKREPNVMVSTVPW------CLVSSLKFVELKRSIPRYEGEMELVRYVLTNSTVLKKL 402

Query: 394 TIKP-ASLEGGWDLIKELLRFRRASARAEIIYL 425
            +    + +     + EL+   R S+   ++ L
Sbjct: 403 RLNVYYTKKAKCAFLTELVAIPRCSSTCVVLVL 435

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FM89|FDL38_ARATH F-box/FBD/LRR-repeat protein At5g56420 OS=Arabidopsis thaliana GN=At5g56420 PE=2 SV=1

 Score = 91.3 bits (225), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 79/284 (27%), Positives = 122/284 (42%), Gaps = 49/284 (17%)

Query: 18  DRLSSLPAHVIDQILSQLPIRDAVRTSVLSKKWRYKWATVPHLVF-----DNHCVSTSSQ 72
           DRLS LP   + QILS LP +D + TS+LSK+WR+ W  VP L +     DN C      
Sbjct: 6   DRLSQLPDDFLLQILSWLPTKDVLVTSLLSKRWRFLWTLVPRLNYDLRLHDNTC------ 59

Query: 73  DQTFIKNKLVNIVDHVLLLHNGPILK---FKLSHRDLLGVSDIDRWILYMSRSCVKEFIL 129
                  +    VD  LLLH  P L+    K+         D+  W+       V+E  +
Sbjct: 60  ------PRFSQFVDRSLLLHKAPTLESLNIKIGSICFTAEKDVGVWVRIGVDRFVRELSV 113

Query: 130 EIWKGQR-YKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHIT-LSQDVFE 187
               G+   ++P  LF C  L  L+L N  L+  S +  F++LK+L L  +  L      
Sbjct: 114 SYCSGEEPIRLPKCLFTCSTLAVLKLENITLEDASCYVCFQSLKTLHLLDVKYLDDQSLP 173

Query: 188 NLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVN 247
            +ISS  +LE L +    G                    D+V        +L ++ L+  
Sbjct: 174 RIISSCSSLEDLVVQRCPG--------------------DNVKVVTVTAPSLKTLSLH-- 211

Query: 248 VKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVP 291
            K+ QA    +      F +  P ++R++I+ Y+  +  I N+P
Sbjct: 212 -KSSQAFEGDDD----GFLIDTPKLKRVDIEDYWGGFCYIENMP 250

Arabidopsis thaliana (taxid: 3702)

>sp|Q3EA38|FDL48_ARATH Putative F-box/FBD/LRR-repeat protein At4g13965 OS=Arabidopsis thaliana GN=At4g13965 PE=4 SV=2

 Score = 90.9 bits (224), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 118/436 (27%), Positives = 182/436 (41%), Gaps = 68/436 (15%)

Query: 18  DRLSSLPAHVIDQILSQLPIRDAVRTSVLSKKWRYKWATVPHLVFDNHCVSTSSQDQTFI 77
           DR+S LP  +I QILS LP   AV TSVLSK+W++ W  +P L FD+  +    + +TF 
Sbjct: 14  DRISQLPEALIIQILSLLPTEVAVTTSVLSKQWQFLWKMLPKLNFDS--LDQRHEFKTFS 71

Query: 78  KNKLVNIVDHVLLLHNGPILK--FKLSHRDLLGVSDIDRWILYMSRSCVKEFILEIWKGQ 135
           KN     V   LL H  P+L     + H  L    +  + I       +++ +LE+  G 
Sbjct: 72  KN-----VKRALLSHKAPVLHSLHLIVHLHLCNSMNTAKLIGIAFACNLRKLVLEV-DGG 125

Query: 136 RYKVPSSLFLCQNLIHLEL-FNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFE-NLISSS 193
           R+ +P SL+ C+ L  LEL ++ L+  PS+    ++L++L L ++    +    NL+S  
Sbjct: 126 RFSIPESLYNCETLDTLELKYSILMDVPSSI-CLKSLRTLHLHYVDFKDNESALNLLSGC 184

Query: 194 PTLERLTLMNF--------------------------DGFTHLNIDAPNLQFFDIGGVFD 227
           P LE L +  +                          D      I++P+L +  I G   
Sbjct: 185 PNLENLVVHRYPFSSVKTYTIAVSSLKRLTIYTSSTVDPRAGYVINSPSLTYLKIVGQIG 244

Query: 228 DVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYF--LKYL 285
               EN   L   S+ +   + N   +    S K L F    P + +    S F  L YL
Sbjct: 245 FCLIENVPELVEASMIVSSQIINKNLLESLTSVKRL-FLEFSPLMIKFPAGSIFYQLVYL 303

Query: 286 AIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGV 345
            +      L      LN L++ +N               SSP LQ L++L+   ++    
Sbjct: 304 EL------LTHEAECLNLLTLMLN---------------SSPKLQILKLLSPKYQSWKKD 342

Query: 346 LTNFWEVDHWT--SLFSQLRMVKIVGISGIRS-ELEFIKFVLSNSPVLETMTI--KPASL 400
           +   W         L   L      G    R+ E E  K++LSN+  L+  T   KP S 
Sbjct: 343 VVGKWNKPKIVPECLLFHLETFMWKGYEWKRNDETEVAKYILSNTNRLKRATFFSKPISS 402

Query: 401 EGGWDLIKELLRFRRA 416
           E    ++K L    RA
Sbjct: 403 EERVKMVKNLNSVVRA 418

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FGR8|FBD19_ARATH Putative FBD-associated F-box protein At5g50270 OS=Arabidopsis thaliana GN=At5g50270 PE=4 SV=2

 Score = 89.4 bits (220), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 116/427 (27%), Positives = 186/427 (43%), Gaps = 71/427 (16%)

Query: 17  LDRLSSLPAHVIDQILSQLP-IRDAVRTSVLSKKWRYKWATVPHLVFDNHCVSTSSQDQT 75
           +DR+S LP  ++ ++LS LP ++D V T VLSK+W++ W  VP LV+D+     S Q+  
Sbjct: 1   MDRISGLPDELLLRVLSLLPNVKDVVVTMVLSKRWQFLWMMVPKLVYDD-----SYQNLE 55

Query: 76  FIKNKLVNIVDHVLLLHNGP---ILKFKLSHRDLLGVSDIDRWILYMSRSCVKEFILEI- 131
           +   K    VD  L +   P    L FKL      G  DI  WI   S+ C +E I+EI 
Sbjct: 56  Y--GKFSRFVDRSLFMRKAPGIETLHFKLGQN--CGNGDIQWWIRAASKFCFRELIIEIN 111

Query: 132 --WKGQRYKVPSSLFL-CQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVF-E 187
                    +P SL+  C+ L+ L+L   +L   S+   F +LK+L L  +    + F +
Sbjct: 112 CSTSASPSILPRSLYTECRMLVTLKLKKAVLVDVSSPTCFPSLKNLSLVSVKYPGNEFVK 171

Query: 188 NLISSSPTLERLTLMNF----------------------------DGFTHLNIDAPNLQF 219
           +L+SS   LE L +                               DG +   ++AP+L++
Sbjct: 172 SLLSSCHVLEDLVVEQCINDNVTIFSVKVPSLKSLVLRTSKERAPDGESGFVVEAPSLEY 231

Query: 220 FDIGGVFDDVTFENTF-HLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQ 278
            DI         EN   +LA      YV+V +            ++F   +  ++RL + 
Sbjct: 232 LDIDQTGGFCVIENGMPNLA----EAYVSVLHHHP---------VKFLSSITSVKRLYL- 277

Query: 279 SYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEE-NLAALCLLRSSPNLQELEMLAR 337
              L +  +  +    P  CV    + I +   D E  NL A CLL+ SP L  L++   
Sbjct: 278 -CLLPHSILSCMQDMYPIRCVFHRLVHITLCTCDDEWLNLLA-CLLKGSPKLISLKL--- 332

Query: 338 PEETGIGVLTNFWEVDHWTSL----FSQLRMVKIVGISGIRSELEFIKFVLSNSPVLETM 393
            +  G  + +     D  +S+     S L  V+ V   G  +E + ++F+L N   L+  
Sbjct: 333 EKHHGHLICSPSPLRDDLSSVPECVLSSLETVEWVDYEGTEAERQLVEFILRNGSCLKKF 392

Query: 394 TIKPASL 400
            I P S+
Sbjct: 393 VISPESV 399

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	430
255538530	426	ubiquitin-protein ligase, putative [Rici	0.983	0.992	0.830	0.0
224067322	505	predicted protein [Populus trichocarpa]	0.983	0.837	0.757	0.0
224136606	416	predicted protein [Populus trichocarpa]	0.965	0.997	0.757	0.0
147855627	416	hypothetical protein VITISV_019244 [Viti	0.965	0.997	0.713	1e-175
225458412	416	PREDICTED: F-box/FBD/LRR-repeat protein	0.965	0.997	0.713	1e-175
356564235	427	PREDICTED: F-box/FBD/LRR-repeat protein	0.983	0.990	0.698	1e-171
357438065	428	F-box/FBD/LRR-repeat protein [Medicago t	0.981	0.985	0.658	1e-158
357438063	660	F-box/FBD/LRR-repeat protein [Medicago t	0.979	0.637	0.658	1e-157
302142424	346	unnamed protein product [Vitis vinifera]	0.783	0.973	0.648	1e-124
357437071	449	F-box/FBD/LRR-repeat protein [Medicago t	0.946	0.906	0.522	1e-113

>gi|255538530|ref|XP_002510330.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223551031|gb|EEF52517.1| ubiquitin-protein ligase, putative [Ricinus communis]

 Score =  726 bits (1873), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/425 (83%), Positives = 390/425 (91%), Gaps = 2/425 (0%)

Query: 4   REPPKFPCKLETELDRLSSLPAHVIDQILSQLPIRDAVRTSVLSKKWRYKWATVPHLVFD 63
           REPPKFPC LETELDR+SSLP HV+DQILSQL IRDAVRTS LS+KWRYKWA +PHLVFD
Sbjct: 3   REPPKFPC-LETELDRISSLPGHVLDQILSQLSIRDAVRTSALSRKWRYKWAKIPHLVFD 61

Query: 64  NHCVSTSSQDQTFIKNKLVNIVDHVLLLHNGPILKFKLSHRDLLGVSDIDRWILYMSRSC 123
           N CVS  SQDQT IK+KLVNI+DHVLLLHNGPI KFKLSHRDLLGVSDIDRWIL++SRS 
Sbjct: 62  NKCVSIPSQDQTLIKDKLVNIIDHVLLLHNGPIQKFKLSHRDLLGVSDIDRWILHLSRSS 121

Query: 124 VKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQ 183
           +KEFILEIWKGQRYKVPSSLF  ++LIHLELFNCLL+PP TFKGFR+LKSLDLQHITL+Q
Sbjct: 122 IKEFILEIWKGQRYKVPSSLFSFEHLIHLELFNCLLQPPLTFKGFRSLKSLDLQHITLTQ 181

Query: 184 DVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIG 243
           +VFENLI S P LERLTLMNFDGFTHLNI+APNLQFFDIGGV+DDVTFENTF L LVSIG
Sbjct: 182 NVFENLIFSCPLLERLTLMNFDGFTHLNINAPNLQFFDIGGVYDDVTFENTFQLTLVSIG 241

Query: 244 LYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNY 303
           LYVNV+ND+ +G G+S KLLRFF +LPHIRRLE+QSYFLKYL+IGNVPSRLP+PC DLNY
Sbjct: 242 LYVNVQNDRNVGHGSSSKLLRFFANLPHIRRLEVQSYFLKYLSIGNVPSRLPKPCFDLNY 301

Query: 304 LSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEE-TGIGVLTNFWEVDHWTSLFSQL 362
           LSIRINFNDLEEN AALCLLRSSPN+QELEMLARPEE T +G +TNFWE DHW +LF QL
Sbjct: 302 LSIRINFNDLEENSAALCLLRSSPNVQELEMLARPEEQTSLGTITNFWEDDHWNNLFGQL 361

Query: 363 RMVKIVGISGIRSELEFIKFVLSNSPVLETMTIKPASLEGGWDLIKELLRFRRASARAEI 422
           R+V+IVGISGIR EL+F+ F+LSNSPVLE MT+KPAS +GGW+LIKELLRFRRASARAEI
Sbjct: 362 RLVRIVGISGIRCELDFMNFLLSNSPVLERMTVKPASSDGGWELIKELLRFRRASARAEI 421

Query: 423 IYLDP 427
           IYLDP
Sbjct: 422 IYLDP 426

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067322|ref|XP_002302466.1| predicted protein [Populus trichocarpa] gi|222844192|gb|EEE81739.1| predicted protein [Populus trichocarpa]

 Score =  677 bits (1748), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/424 (75%), Positives = 374/424 (88%), Gaps = 1/424 (0%)

Query: 4   REPPKFPCKLETELDRLSSLPAHVIDQILSQLPIRDAVRTSVLSKKWRYKWATVPHLVFD 63
           REPPKFPC+++TELDR+SSLP HV+ QILS LPIRDAVRTS L +KWRYKW+ +PH+VFD
Sbjct: 81  REPPKFPCEIDTELDRISSLPGHVLGQILSLLPIRDAVRTSALKRKWRYKWSQIPHIVFD 140

Query: 64  NHCVSTSSQDQTFIKNKLVNIVDHVLLLHNGPILKFKLSHRDLLGVSDIDRWILYMSRSC 123
           +  +S SSQDQT IKNKLVNI+DH+LLLHNGPI KFKLSH DLL VSDIDRWIL++SR  
Sbjct: 141 SQGISISSQDQTTIKNKLVNIIDHILLLHNGPIYKFKLSHCDLLAVSDIDRWILHLSRGS 200

Query: 124 VKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQ 183
            KEF+LEIWKGQ+YK+PS LF  +NL++LELFNCLLKPP  FKGFRNLK+LDLQH+TL+Q
Sbjct: 201 TKEFVLEIWKGQQYKLPSCLFSFKNLVYLELFNCLLKPPLAFKGFRNLKNLDLQHVTLAQ 260

Query: 184 DVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIG 243
           +VFE LISS   LERLTL+NFDGFTHLNI+APNLQFFD+GGVFDDV+FENTF LALVSIG
Sbjct: 261 EVFEKLISSCAMLERLTLINFDGFTHLNINAPNLQFFDVGGVFDDVSFENTFVLALVSIG 320

Query: 244 LYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNY 303
           LYVNVKNDQ +  G+S KLLRFFV+LPH+RRLEIQSYFLKYLAIG VPS+LP+PC+DLNY
Sbjct: 321 LYVNVKNDQNVSYGSSSKLLRFFVNLPHVRRLEIQSYFLKYLAIGKVPSKLPKPCIDLNY 380

Query: 304 LSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETG-IGVLTNFWEVDHWTSLFSQL 362
           LSIR+NFND EEN AA CLLRS PNLQE+E+LARPEE   +G +T+FW+ DHW  LF QL
Sbjct: 381 LSIRLNFNDYEENSAAFCLLRSCPNLQEIEILARPEEQAVVGPVTDFWDDDHWKCLFGQL 440

Query: 363 RMVKIVGISGIRSELEFIKFVLSNSPVLETMTIKPASLEGGWDLIKELLRFRRASARAEI 422
           R+VKIVGISGIRSEL+ IKF+LSNSPVLE MTIKP S EGGW+L+K+LL FRRAS +AE+
Sbjct: 441 RLVKIVGISGIRSELDCIKFLLSNSPVLEKMTIKPVSNEGGWELVKQLLHFRRASIQAEV 500

Query: 423 IYLD 426
            +L+
Sbjct: 501 FHLE 504

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136606|ref|XP_002326902.1| predicted protein [Populus trichocarpa] gi|222835217|gb|EEE73652.1| predicted protein [Populus trichocarpa]

 Score =  657 bits (1695), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/416 (75%), Positives = 360/416 (86%), Gaps = 1/416 (0%)

Query: 13  LETELDRLSSLPAHVIDQILSQLPIRDAVRTSVLSKKWRYKWATVPHLVFDNHCVSTSSQ 72
           ++TELDR+SSLP HV+DQILS LPIRDAVRTS LS+KWRY+W+ +PHLVFD  C S +SQ
Sbjct: 1   MDTELDRISSLPGHVLDQILSVLPIRDAVRTSALSRKWRYQWSQIPHLVFDTQCASITSQ 60

Query: 73  DQTFIKNKLVNIVDHVLLLHNGPILKFKLSHRDLLGVSDIDRWILYMSRSCVKEFILEIW 132
           DQT  KN LVNI+D+VLLLHNGPI KFKLSHRDLLGVSDIDRWIL++SR   KEF+LEIW
Sbjct: 61  DQTIAKNNLVNIIDNVLLLHNGPIYKFKLSHRDLLGVSDIDRWILHLSRGSTKEFVLEIW 120

Query: 133 KGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISS 192
           KGQRYK+PS LF  +NL HLELFNCLLKPP  FKGFRNLKSLDLQH+TL+Q+VFENLISS
Sbjct: 121 KGQRYKLPSCLFSFENLTHLELFNCLLKPPPAFKGFRNLKSLDLQHVTLAQEVFENLISS 180

Query: 193 SPTLERLTLMNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQ 252
              LERLTLMNFDGFTHL I+APNLQFFDIGG+FDDV+F NT  L LVSIGLY NVKND+
Sbjct: 181 CALLERLTLMNFDGFTHLKINAPNLQFFDIGGIFDDVSFHNTSLLTLVSIGLYANVKNDR 240

Query: 253 AMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFND 312
            +  G+S KLLRFFV+LPH+RRLEIQSYF+KYLAI  VPSRLP+PC+DLNY+SIRINFND
Sbjct: 241 HVSRGSSSKLLRFFVNLPHLRRLEIQSYFIKYLAISKVPSRLPKPCMDLNYISIRINFND 300

Query: 313 LEENLAALCLLRSSPNLQELEMLARPEETG-IGVLTNFWEVDHWTSLFSQLRMVKIVGIS 371
            EEN AALC+L+S PNLQE+EML RPEE   +   T FW  D W  LF QLR+VKIVGIS
Sbjct: 301 FEENSAALCILKSCPNLQEIEMLGRPEEQADVEPQTGFWGDDQWKCLFGQLRLVKIVGIS 360

Query: 372 GIRSELEFIKFVLSNSPVLETMTIKPASLEGGWDLIKELLRFRRASARAEIIYLDP 427
           GIRSEL+ IKF+LSNSPVLE MT+KPAS+EGGW+L+KELLRFRRAS +AE+IYL+P
Sbjct: 361 GIRSELDCIKFLLSNSPVLEQMTVKPASIEGGWELVKELLRFRRASIQAEVIYLEP 416

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147855627|emb|CAN79162.1| hypothetical protein VITISV_019244 [Vitis vinifera]

 Score =  619 bits (1597), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 297/416 (71%), Positives = 349/416 (83%), Gaps = 1/416 (0%)

Query: 13  LETELDRLSSLPAHVIDQILSQLPIRDAVRTSVLSKKWRYKWATVPHLVFDNHCVSTSSQ 72
           ++ ELD++S+LP H+ID+ILS L IRDAVR SVLS KWR+KW T+P+LVFDN CVS SSQ
Sbjct: 1   MDMELDKISNLPGHIIDKILSLLSIRDAVRMSVLSSKWRFKWVTLPYLVFDNQCVSISSQ 60

Query: 73  DQTFIKNKLVNIVDHVLLLHNGPILKFKLSHRDLLGVSDIDRWILYMSRSCVKEFILEIW 132
           DQT +KNKLVNI+DHVLLLH GPI KF+LSHRD LG SDIDRWILY+SR+ ++EFILEIW
Sbjct: 61  DQTLVKNKLVNIIDHVLLLHTGPIHKFRLSHRDFLGGSDIDRWILYLSRTPIREFILEIW 120

Query: 133 KGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISS 192
           KGQ YK+PS L+ CQ+LIHLELFN LLKPP TFKGF +LKSLDLQHI ++QD FENLISS
Sbjct: 121 KGQHYKLPSCLYNCQSLIHLELFNSLLKPPPTFKGFXSLKSLDLQHIIMAQDAFENLISS 180

Query: 193 SPTLERLTLMNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQ 252
            P LE+ TLMNFDGFTHLNI APNLQFFD GGVF DV F+NTF LA VSIGLYV++ ND+
Sbjct: 181 CPLLEKFTLMNFDGFTHLNIHAPNLQFFDTGGVFYDVNFKNTFLLATVSIGLYVDITNDK 240

Query: 253 AMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFND 312
            +  GNS  L++FF HLP I+RLEIQSYFLKYLA GNVP +LP PC+DL +LSIRINF+ 
Sbjct: 241 NLADGNSRNLVKFFAHLPRIQRLEIQSYFLKYLAAGNVPGKLPAPCIDLTHLSIRINFSS 300

Query: 313 LEENLAALCLLRSSPNLQELEMLARPEE-TGIGVLTNFWEVDHWTSLFSQLRMVKIVGIS 371
           +EENL ALCLLRSSPNLQELEMLARPEE T +   T  W+ +HW   F+ LR+VK+ GIS
Sbjct: 301 VEENLTALCLLRSSPNLQELEMLARPEEQTLLETSTTLWKKEHWNYXFAHLRVVKLTGIS 360

Query: 372 GIRSELEFIKFVLSNSPVLETMTIKPASLEGGWDLIKELLRFRRASARAEIIYLDP 427
           G+  +L+FI F+L+ SPVLE MT+KPAS +G W+LIK+LLRFRRAS RAEIIYLDP
Sbjct: 361 GVGPQLDFINFLLAYSPVLEKMTVKPASGDGAWELIKDLLRFRRASVRAEIIYLDP 416

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458412|ref|XP_002281901.1| PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Vitis vinifera]

 Score =  619 bits (1597), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 297/416 (71%), Positives = 349/416 (83%), Gaps = 1/416 (0%)

Query: 13  LETELDRLSSLPAHVIDQILSQLPIRDAVRTSVLSKKWRYKWATVPHLVFDNHCVSTSSQ 72
           ++ ELD++S+LP H+ID+ILS L IRDAVR SVLS KWR+KW T+P+LVFDN CVS SSQ
Sbjct: 1   MDMELDKISNLPGHIIDKILSLLSIRDAVRMSVLSSKWRFKWVTLPYLVFDNQCVSISSQ 60

Query: 73  DQTFIKNKLVNIVDHVLLLHNGPILKFKLSHRDLLGVSDIDRWILYMSRSCVKEFILEIW 132
           DQT +KNKLVNI+DHVLLLH GPI KF+LSHRD LG SDIDRWILY+SR+ ++EFILEIW
Sbjct: 61  DQTLVKNKLVNIIDHVLLLHTGPIHKFRLSHRDFLGGSDIDRWILYLSRTPIREFILEIW 120

Query: 133 KGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISS 192
           KGQ YK+PS L+ CQ+LIHLELFN LLKPP TFKGF +LKSLDLQHI ++QD FENLISS
Sbjct: 121 KGQHYKLPSCLYNCQSLIHLELFNSLLKPPPTFKGFMSLKSLDLQHIIMAQDAFENLISS 180

Query: 193 SPTLERLTLMNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQ 252
            P LE+ TLMNFDGFTHLNI APNLQFFD GGVF DV F+NTF LA VSIGLYV++ ND+
Sbjct: 181 CPLLEKFTLMNFDGFTHLNIHAPNLQFFDTGGVFYDVNFKNTFLLATVSIGLYVDITNDK 240

Query: 253 AMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFND 312
            +  GNS  L++FF HLP I+RLEIQSYFLKYLA GNVP +LP PC+DL +LSIRINF+ 
Sbjct: 241 NLADGNSRNLVKFFAHLPRIQRLEIQSYFLKYLAAGNVPGKLPAPCIDLTHLSIRINFSS 300

Query: 313 LEENLAALCLLRSSPNLQELEMLARPEE-TGIGVLTNFWEVDHWTSLFSQLRMVKIVGIS 371
           +EENL ALCLLRSSPNLQELEMLARPEE T +   T  W+ +HW   F+ LR+VK+ GIS
Sbjct: 301 VEENLTALCLLRSSPNLQELEMLARPEEQTLLETSTTLWKKEHWNYSFAHLRVVKLTGIS 360

Query: 372 GIRSELEFIKFVLSNSPVLETMTIKPASLEGGWDLIKELLRFRRASARAEIIYLDP 427
           G+  +L+FI F+L+ SPVLE MT+KPAS +G W+LIK+LLRFRRAS RAEIIYLDP
Sbjct: 361 GVGPQLDFINFLLAYSPVLEKMTVKPASGDGAWELIKDLLRFRRASVRAEIIYLDP 416

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564235|ref|XP_003550361.1| PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Glycine max]

 Score =  606 bits (1563), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 297/425 (69%), Positives = 355/425 (83%), Gaps = 2/425 (0%)

Query: 4   REPPKFPCKLETELDRLSSLPAHVIDQILSQLPIRDAVRTSVLSKKWRYKWATVPHLVFD 63
           RE P+ PC  + E DR+S LP HVIDQ+LS L IR+AVRTSVLS KWRYKWAT+P LVFD
Sbjct: 3   REQPRSPCLTDVEPDRISCLPGHVIDQVLSHLSIREAVRTSVLSSKWRYKWATLPILVFD 62

Query: 64  NHCVSTSSQDQTFIKNKLVNIVDHVLLLHNGPILKFKLSHRDLLGVSDIDRWILYMSRSC 123
            HCVS +SQD   IKNKL+ I+DHVLLLH+GPI KFKLSHRDL+GV+DIDRW L++ R  
Sbjct: 63  THCVSVASQDHMIIKNKLLRIIDHVLLLHSGPINKFKLSHRDLIGVTDIDRWTLHLCRKS 122

Query: 124 VKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQ 183
           +KEF+LEIWKGQRYK+ S LF CQ+L HLELFNC LKPPSTF+GF+NLKSLDLQH+TL+Q
Sbjct: 123 IKEFVLEIWKGQRYKIHSCLFSCQSLTHLELFNCWLKPPSTFQGFKNLKSLDLQHVTLAQ 182

Query: 184 DVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIG 243
           DVFENLISS P LERLTLMNFDGFT+LNIDAPNL FFDIGG F+D++FENTF LA+VSIG
Sbjct: 183 DVFENLISSCPLLERLTLMNFDGFTNLNIDAPNLLFFDIGGKFEDISFENTFQLAVVSIG 242

Query: 244 LYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNY 303
           LY+N + +Q+   G S  LL+FFVHLPH++RLE+QSYFLKYLA+G VP +LPRPC+DL+Y
Sbjct: 243 LYLNFEINQSRLHGGSSNLLKFFVHLPHVQRLEVQSYFLKYLAVGVVPIKLPRPCIDLSY 302

Query: 304 LSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNF-WEVDHWTSLFSQL 362
           LSIRINFNDL+E  A+LCLLRSSPNLQELE+LARPEE  + +   + WE  +++    QL
Sbjct: 303 LSIRINFNDLKEISASLCLLRSSPNLQELEILARPEEQTVLLTHTYCWEDVYFSCPVMQL 362

Query: 363 RMVKIVGISGIRSELEFIKFVLSNSPVLETMTIKPASLEGGWDLIKELLRFRRASARAEI 422
           R VKI GISGI+ EL+FI F+L +SPVLE MT+KP +   G +L+KELLRFRRAS +AEI
Sbjct: 363 RYVKIDGISGIKPELDFINFLLLHSPVLERMTVKPVA-NVGLELMKELLRFRRASGQAEI 421

Query: 423 IYLDP 427
           IYL+P
Sbjct: 422 IYLEP 426

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357438065|ref|XP_003589308.1| F-box/FBD/LRR-repeat protein [Medicago truncatula] gi|355478356|gb|AES59559.1| F-box/FBD/LRR-repeat protein [Medicago truncatula]

 Score =  565 bits (1455), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 280/425 (65%), Positives = 340/425 (80%), Gaps = 3/425 (0%)

Query: 4   REPPKFPCKLETELDRLSSLPAHVIDQILSQLPIRDAVRTSVLSKKWRYKWATVPHLVFD 63
           RE  + PC  + E DR+SSLP H+IDQILS LPI++AVRTS+LS KWRYKWAT+P+LVFD
Sbjct: 3   REQSQSPCVTDAEPDRISSLPGHIIDQILSILPIKEAVRTSILSTKWRYKWATLPNLVFD 62

Query: 64  NHCVSTSSQDQTFIKNKLVNIVDHVLLLHNGPILKFKLSHRDLLGVSDIDRWILYMSRSC 123
           + C+S +S+D   IK+KL  I+DHVLLLH+GPI KFKLSHR+L+GV+DIDRW L+++R  
Sbjct: 63  SQCISDTSEDLLVIKSKLSRIIDHVLLLHSGPIKKFKLSHRELIGVTDIDRWTLHLTRRP 122

Query: 124 VKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQ 183
           VKEF+LEIWKGQRYK+PS LF CQ L HLELFNC L PPSTF+GFRNLKSLDLQH+TLSQ
Sbjct: 123 VKEFVLEIWKGQRYKIPSCLFSCQGLHHLELFNCWLIPPSTFQGFRNLKSLDLQHVTLSQ 182

Query: 184 DVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIG 243
           D FENLIS+ P LERLTLMNFDGF +LNI APNLQFFDIGG F+D++F+NT  LA+VSIG
Sbjct: 183 DAFENLISTCPLLERLTLMNFDGFNYLNIHAPNLQFFDIGGKFEDISFKNTSQLAVVSIG 242

Query: 244 LYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNY 303
           LYVN ++ Q    G +  L+ F +HLP I+RLEIQSYFLKYLA+G VP +LP PC+DL+Y
Sbjct: 243 LYVNFESSQGRLHGRTSNLVEFLIHLPRIQRLEIQSYFLKYLALGAVPVKLPTPCIDLSY 302

Query: 304 LSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVL--TNFWEVDHWTSLFSQ 361
           LSIRINF D +E  AALCL RSSPNL+ELE+LARPEE  + +    + WE  +      +
Sbjct: 303 LSIRINFYDSKEISAALCLFRSSPNLRELEILARPEEQPLPLAHHADCWEDVYLDWPVMR 362

Query: 362 LRMVKIVGISGIRSELEFIKFVLSNSPVLETMTIKPASLEGGWDLIKELLRFRRASARAE 421
           +R V+I GISGI+ EL+FI F+L  SPVLE MT+KPA L    +L+KELLR RRAS RAE
Sbjct: 363 VRHVRIDGISGIKPELDFISFILLYSPVLERMTVKPA-LNASPELVKELLRLRRASGRAE 421

Query: 422 IIYLD 426
           +IYLD
Sbjct: 422 VIYLD 426

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357438063|ref|XP_003589307.1| F-box/FBD/LRR-repeat protein [Medicago truncatula] gi|355478355|gb|AES59558.1| F-box/FBD/LRR-repeat protein [Medicago truncatula]

 Score =  561 bits (1445), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 279/424 (65%), Positives = 339/424 (79%), Gaps = 3/424 (0%)

Query: 5   EPPKFPCKLETELDRLSSLPAHVIDQILSQLPIRDAVRTSVLSKKWRYKWATVPHLVFDN 64
           E  + PC  + E DR+SSLP H+IDQILS LPI++AVRTS+LS KWRYKWAT+P+LVFD+
Sbjct: 236 EQSQSPCVTDAEPDRISSLPGHIIDQILSILPIKEAVRTSILSTKWRYKWATLPNLVFDS 295

Query: 65  HCVSTSSQDQTFIKNKLVNIVDHVLLLHNGPILKFKLSHRDLLGVSDIDRWILYMSRSCV 124
            C+S +S+D   IK+KL  I+DHVLLLH+GPI KFKLSHR+L+GV+DIDRW L+++R  V
Sbjct: 296 QCISDTSEDLLVIKSKLSRIIDHVLLLHSGPIKKFKLSHRELIGVTDIDRWTLHLTRRPV 355

Query: 125 KEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQD 184
           KEF+LEIWKGQRYK+PS LF CQ L HLELFNC L PPSTF+GFRNLKSLDLQH+TLSQD
Sbjct: 356 KEFVLEIWKGQRYKIPSCLFSCQGLHHLELFNCWLIPPSTFQGFRNLKSLDLQHVTLSQD 415

Query: 185 VFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGL 244
            FENLIS+ P LERLTLMNFDGF +LNI APNLQFFDIGG F+D++F+NT  LA+VSIGL
Sbjct: 416 AFENLISTCPLLERLTLMNFDGFNYLNIHAPNLQFFDIGGKFEDISFKNTSQLAVVSIGL 475

Query: 245 YVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYL 304
           YVN ++ Q    G +  L+ F +HLP I+RLEIQSYFLKYLA+G VP +LP PC+DL+YL
Sbjct: 476 YVNFESSQGRLHGRTSNLVEFLIHLPRIQRLEIQSYFLKYLALGAVPVKLPTPCIDLSYL 535

Query: 305 SIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVL--TNFWEVDHWTSLFSQL 362
           SIRINF D +E  AALCL RSSPNL+ELE+LARPEE  + +    + WE  +      ++
Sbjct: 536 SIRINFYDSKEISAALCLFRSSPNLRELEILARPEEQPLPLAHHADCWEDVYLDWPVMRV 595

Query: 363 RMVKIVGISGIRSELEFIKFVLSNSPVLETMTIKPASLEGGWDLIKELLRFRRASARAEI 422
           R V+I GISGI+ EL+FI F+L  SPVLE MT+KPA L    +L+KELLR RRAS RAE+
Sbjct: 596 RHVRIDGISGIKPELDFISFILLYSPVLERMTVKPA-LNASPELVKELLRLRRASGRAEV 654

Query: 423 IYLD 426
           IYLD
Sbjct: 655 IYLD 658

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142424|emb|CBI19627.3| unnamed protein product [Vitis vinifera]

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 229/353 (64%), Positives = 274/353 (77%), Gaps = 16/353 (4%)

Query: 77  IKNKLVNIVDHVLLLHNGPILKFKLSHRDLLGVSDID-RWILYMSRSCVKEFILEIWKGQ 135
           I N   +I+D +L L         LS RD + +S +  +W     R+ ++EFILEIWKGQ
Sbjct: 8   ISNLPGHIIDKILSL---------LSIRDAVRMSVLSSKW-----RTPIREFILEIWKGQ 53

Query: 136 RYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPT 195
            YK+PS L+ CQ+LIHLELFN LLKPP TFKGF +LKSLDLQHI ++QD FENLISS P 
Sbjct: 54  HYKLPSCLYNCQSLIHLELFNSLLKPPPTFKGFMSLKSLDLQHIIMAQDAFENLISSCPL 113

Query: 196 LERLTLMNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMG 255
           LE+ TLMNFDGFTHLNI APNLQFFD GGVF DV F+NTF LA VSIGLYV++ ND+ + 
Sbjct: 114 LEKFTLMNFDGFTHLNIHAPNLQFFDTGGVFYDVNFKNTFLLATVSIGLYVDITNDKNLA 173

Query: 256 PGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEE 315
            GNS  L++FF HLP I+RLEIQSYFLKYLA GNVP +LP PC+DL +LSIRINF+ +EE
Sbjct: 174 DGNSRNLVKFFAHLPRIQRLEIQSYFLKYLAAGNVPGKLPAPCIDLTHLSIRINFSSVEE 233

Query: 316 NLAALCLLRSSPNLQELEMLARPEE-TGIGVLTNFWEVDHWTSLFSQLRMVKIVGISGIR 374
           NL ALCLLRSSPNLQELEMLARPEE T +   T  W+ +HW   F+ LR+VK+ GISG+ 
Sbjct: 234 NLTALCLLRSSPNLQELEMLARPEEQTLLETSTTLWKKEHWNYSFAHLRVVKLTGISGVG 293

Query: 375 SELEFIKFVLSNSPVLETMTIKPASLEGGWDLIKELLRFRRASARAEIIYLDP 427
            +L+FI F+L+ SPVLE MT+KPAS +G W+LIK+LLRFRRAS RAEIIYLDP
Sbjct: 294 PQLDFINFLLAYSPVLEKMTVKPASGDGAWELIKDLLRFRRASVRAEIIYLDP 346

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357437071|ref|XP_003588811.1| F-box/FBD/LRR-repeat protein [Medicago truncatula] gi|355477859|gb|AES59062.1| F-box/FBD/LRR-repeat protein [Medicago truncatula]

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 223/427 (52%), Positives = 295/427 (69%), Gaps = 20/427 (4%)

Query: 14  ETELDRLSSLPAHVIDQILSQLPIRDAVRTSVLSKKWRYKWATVPHLVFDNHCVSTSSQD 73
           + ELDR+S LP HVIDQILS +PI++AVRTSVLS  WR KW T+P+LVF+ HC+S ++  
Sbjct: 15  DAELDRISCLPGHVIDQILSLMPIKEAVRTSVLSSSWRNKWYTLPNLVFNKHCISVAASK 74

Query: 74  QT-FIKNKLVNIVDHVLLLHNGPILKFKLSHRD-----LLGVSDIDRWILYMSRSCVKEF 127
            T  I NK + IVDHVLL H+GPI KF LS  +     +  VSD+ RW+L++SR  +KE 
Sbjct: 75  YTSVINNKFLRIVDHVLLQHSGPINKFMLSDNENCLIRVCDVSDVHRWVLHLSRRSIKEL 134

Query: 128 ILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFE 187
           +L  W  +RYK+P SLF CQ+L HL L  C LK P+TF+GF+NL+ L L+ +TL+QD FE
Sbjct: 135 LLHFWLDKRYKIPLSLFSCQSLRHLSLSCCQLKLPTTFEGFKNLQYLHLEEVTLAQDDFE 194

Query: 188 NLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENT--FHLALVSIGLY 245
           N+IS  P L+ L LM  DGF+ +N+ APNL  F   G F+D++F+N+   +   V + +Y
Sbjct: 195 NMISGCPLLDHLVLMKIDGFSQINVHAPNLSTFQFYGKFEDISFQNSSQIYTVYVDLSIY 254

Query: 246 VNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLS 305
           +N K++Q+   G S  LL+FF H PHI+ LEI  YFLKYLA  +VP +LP PC+ L  LS
Sbjct: 255 LNSKSNQSKLHGCSSNLLKFFAHQPHIQFLEIGYYFLKYLAADDVPVKLPAPCISLCELS 314

Query: 306 IRINFNDLEENLAALCLLRSSPNLQELEMLAR-PEETGIGVLTNFWEVDHWTSLFS---- 360
           + INFNDL+E  AALCLLRSSPNL++LE+ AR  EET +   T++     W  +FS    
Sbjct: 315 LCINFNDLKEISAALCLLRSSPNLKKLEIFARIEEETVLLTPTSYC----WEDIFSGPAM 370

Query: 361 --QLRMVKIVGISGIRSELEFIKFVLSNSPVLETMTIKPASLEGGWDLIKELLRFRRASA 418
             Q++ V I GISGIRSEL+FI+F+L  SPVLE M +K   +    +LI ELLRF+RAS 
Sbjct: 371 PIQVQHVTIDGISGIRSELDFIRFLLRYSPVLEKMIVKHV-VNVQPELITELLRFKRASD 429

Query: 419 RAEIIYL 425
            AE+IYL
Sbjct: 430 EAEVIYL 436

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	430
TAIR|locus:2010032	416	AT1G13570 "AT1G13570" [Arabido	0.930	0.961	0.419	7.1e-77
TAIR|locus:505006162	422	AT1G32375 "AT1G32375" [Arabido	0.895	0.912	0.270	7.3e-23
TAIR|locus:2162484	466	AT5G22730 "AT5G22730" [Arabido	0.409	0.377	0.322	7.3e-22
TAIR|locus:2157922	444	AT5G53840 "AT5G53840" [Arabido	0.918	0.889	0.267	6.2e-21
TAIR|locus:2122754	409	AT4G10400 "AT4G10400" [Arabido	0.913	0.960	0.264	3.5e-20
TAIR|locus:2161088	421	AT5G56370 "AT5G56370" [Arabido	0.897	0.916	0.264	4.2e-20
TAIR|locus:2161053	422	AT5G56420 "AT5G56420" [Arabido	0.451	0.459	0.322	5e-20
TAIR|locus:2008276	435	AT1G51370 "AT1G51370" [Arabido	0.918	0.908	0.262	2e-19
TAIR|locus:2099019	457	AT3G58860 "AT3G58860" [Arabido	0.437	0.411	0.314	1.1e-18
TAIR|locus:2083268	456	AT3G52680 "AT3G52680" [Arabido	0.858	0.809	0.274	2.9e-18

TAIR|locus:2010032 AT1G13570 "AT1G13570" [Arabidopsis thaliana (taxid:3702)]

 Score = 774 (277.5 bits), Expect = 7.1e-77, P = 7.1e-77
 Identities = 175/417 (41%), Positives = 256/417 (61%)

Query:    18 DRLSSLPAHVIDQILSQLPIRDAVRTSVLSKKWRYKWATVPHLVFDNHCVSTSSQDQTFI 77
             D +S LP  +I+ IL++L IRDA+RTSVLS KWRYKW+T+  LVFD  CVS S+ D+  +
Sbjct:     6 DFISDLPQSIIENILTRLSIRDAIRTSVLSSKWRYKWSTLTDLVFDEKCVSPSN-DRCVV 64

Query:    78 KNKLVNIVDHVLLLHNGPILKFKLSHRDLLGVSDIDRWILYMSRSCVKEFILEIWKGQRY 137
             +  LV  +  VLLLH GPI KF+LS        DID+W+L++SR+ +KE +L++ +G+ +
Sbjct:    65 ETNLVRFITGVLLLHQGPIHKFQLSTSFKQCRPDIDQWLLFLSRNGIKELVLKLGEGE-F 123

Query:   138 KVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLE 197
             +VP+ LF C  L  LEL +C   PP  FKGF  LKSL+L  I ++ +V E+LIS  P LE
Sbjct:   124 RVPACLFNCLKLTCLELCHCEFDPPQYFKGFSYLKSLNLHQILVAPEVIESLISGCPLLE 183

Query:   198 RLTLMNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPG 257
              L+L  FD    L+I APNL +  + G F D+  ENT  L  +S+ +Y++ ++       
Sbjct:   184 FLSLSYFDSLV-LSISAPNLMYLYLDGEFKDIFLENTPKLVAISVSMYMH-EDVTDFEQS 241

Query:   258 NSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSI-RINFNDLEEN 316
             +   L++F   +P + +L    YF KYL+IG+ P RLP   + L  + + ++ F D +E 
Sbjct:   242 SDYNLVKFLGGVPLLEKLVGYIYFTKYLSIGDDPGRLPLTYIHLKTIELYQVCFEDADEV 301

Query:   317 LAALCLLRSSPNLQELEMLARP------EETGIGVLTNFWEVDHWTSLFSQLRMVKIVGI 370
             L  L L+  SPNL+EL++ A P      EE G     + +E D++      L  VKI   
Sbjct:   302 LVLLRLVTHSPNLKELKVSASPVQPFPLEEEGF----DLFERDYFDYKLPSLESVKITDA 357

Query:   371 SGIRSELEFIKFVLSNSPVLETMTIKPA--SLEGGWDLIKELLRFRRASARAEIIYL 425
             SGIR ELEFI+F+L  SPVLET+T+  +    +   D++ ELLR+ R S RA++++L
Sbjct:   358 SGIRYELEFIRFLLGTSPVLETVTVSSSLSDKDAKMDMVIELLRYPRVSPRAQLLFL 414

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:505006162 AT1G32375 "AT1G32375" [Arabidopsis thaliana (taxid:3702)]

 Score = 281 (104.0 bits), Expect = 7.3e-23, P = 7.3e-23
 Identities = 116/429 (27%), Positives = 194/429 (45%)

Query:    17 LDRLSSLPAHVIDQILSQLPIRDAVRTSVLSKKWRYKWATVPHLVFDNHCVSTSSQDQTF 76
             +D+LS LP  ++ +ILS L  +D V T VLSK+W++ W  VP L++D+         Q  
Sbjct:     1 MDKLSQLPEALLVRILSLLSAKDVVSTMVLSKRWQFLWMLVPKLIYDDSY-------QAI 53

Query:    77 IKNKLVNIVDHVLLLHNGPILK---FKLSHRDLLGVSDIDRWILYMSRSCVKEFILEIWK 133
                     VD    LH+  +L    FKL  +   G  DI  WI    +SC++E I+EI K
Sbjct:    54 EYGSFSRFVDRSFTLHDAQVLDTLHFKLG-KTSCGTGDIRVWIKTAEKSCLRELIIEIDK 112

Query:   134 GQRYK----VPSSLFLC-QNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQD-VFE 187
                      +P SL+ C + L+ L+L N +L   ++   F +LK+L L  +    D + +
Sbjct:   113 SNSDNSSVVLPRSLYTCCRMLVTLKLNNAVLVDATSSFSFPSLKTLSLVSMKFPGDELIK 172

Query:   188 NLISSSPTLERLTLMN--FDGFTHLNIDAPNLQFF-----DIGGVFDDVTFE-NTFHLAL 239
              L+S+ P LE L +    +D  T   +   +L+       ++  +  D  F  +T  L  
Sbjct:   173 MLLSNCPVLEDLVVKRCPYDNVTTFTVRVSSLKCLVLHETELASINADCGFVIDTPSLEC 232

Query:   240 VSI----GLYVNVKNDQA-MGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRL 294
             + I    G +  ++N+   +   N C     +VH   +    I S    Y+ I +  S+ 
Sbjct:   233 LDIEDGRGGFCVIENNMTKVVKANVCNS---YVHTQQLMG-SISSVKRLYVCIPS--SKD 286

Query:   295 PRPCVDLNYLSIRINFNDLEE---NLAALCLLRSSPNLQELEMLARPEETGIGVLTNFWE 351
               P   + +  +R+     E    NL  +C+LR SP L+EL+++             + E
Sbjct:   287 AYPVGSVFHCLVRLTICTCETEWLNLL-MCVLRDSPKLRELKLVKNHVYRSHQPRPCWNE 345

Query:   352 VDHWTS-LFSQLRMVKIVGISGIRSELEFIKFVLSNSPVLETMTI--KPASLEGGWDLIK 408
                    L + L  ++ V   G   E E   F+L +   L+ +TI  K   +   ++++K
Sbjct:   346 PSAVPECLLTSLETLEWVKYEGTEEEKEVAAFILRSGSCLKKVTISSKSTDINKKFEMLK 405

Query:   409 EL-LRFRRA 416
             EL L FRR+
Sbjct:   406 ELSLLFRRS 414

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2162484 AT5G22730 "AT5G22730" [Arabidopsis thaliana (taxid:3702)]

 Score = 201 (75.8 bits), Expect = 7.3e-22, Sum P(2) = 7.3e-22
 Identities = 62/192 (32%), Positives = 97/192 (50%)

Query:    18 DRLSSLPAHVIDQILSQLPIRDAVRTSVLSKKWRYKWATVPHLVFDNHCVSTSSQD-QTF 76
             D +S LP  +I QIL  LPI+D VRTS LS +W+  W  +P L  D    S   QD   F
Sbjct:    28 DLISKLPDSLITQILLYLPIKDIVRTSSLSSRWKSLWLLIPRLDLD----SEEFQDYNAF 83

Query:    77 I--KNKLVNIVDHVLLLHNGPILKFKLSHRDLLG-VSDIDRWILYMSRSCVKEFILEIWK 133
             +   NK ++      +  +    K KLS R  +  +  + RWI ++ R  +K   +E   
Sbjct:    84 VGFMNKFIDFSGEEKICLD----KLKLSSRKTVNDLPCVTRWIDFVVRRKLKHLDVECLV 139

Query:   134 GQRY--KVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDV-FENLI 190
              +++  ++P SL++C  L++L L   LL           LK++ L+    + DV  E+LI
Sbjct:   140 NRKFLEEMPLSLYVCDTLVNLRLHRVLLGKFEAVS-LPCLKTMRLEENVYANDVVLESLI 198

Query:   191 SSSPTLERLTLM 202
             SS P L+ L ++
Sbjct:   199 SSCPVLKDLIIL 210

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2157922 AT5G53840 "AT5G53840" [Arabidopsis thaliana (taxid:3702)]

 Score = 267 (99.0 bits), Expect = 6.2e-21, P = 6.2e-21
 Identities = 117/438 (26%), Positives = 196/438 (44%)

Query:    15 TELDRLSSLPAHVIDQILSQLPIRDAVRTSVLSKKWRYKWATVPHLVFDNHCVSTSSQDQ 74
             +E +RLS LP H+I  ILS L  +DAVRTS+LS +WR  W  VP L FD      S + +
Sbjct:    15 SEEERLSQLPDHLICVILSHLSTKDAVRTSILSTRWRNLWQLVPVLDFD------SRELR 68

Query:    75 TFIKNKLVNIVDHVLLLHNGP-ILKFKLSHRDLLGVSDIDRWILYMSRSCVKEFILEIWK 133
             +F  ++ V+       LH    I K ++   DL G   +  WI  ++R  ++   + ++ 
Sbjct:    69 SF--SEFVSFAGSFFYLHKDSYIQKLRVCIYDLAGNYYLTSWIDLVTRHRIQHIDISVFT 126

Query:   134 GQRYKV-PSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDV-FENLIS 191
                + V P SL+ C  L+HL+L    +     F     LK LDL  +  + +   + +IS
Sbjct:   127 CSGFGVIPLSLYTCDTLVHLKLSRVTMVNVE-FVSLPCLKILDLDFVNFTNETTLDKIIS 185

Query:   192 SSPTLERLTLMNF--DGFTHLNIDAPNLQFFDIGGVFD---------------DVTFENT 234
              SP LE LT++    D    + + +  L+  +I   FD                +   + 
Sbjct:   186 CSPVLEELTIVKSSEDNVKIIQVRSQTLKRVEIHRRFDRHNGLVIDTPLLQFLSIKAHSI 245

Query:   235 FHLALVSIGLYVNVKND-QAMGPGN--SCKLLR-FFVHLPHIRRLEIQSYFLKYLAIGNV 290
               +  +++G    V  D   + P +  +  + R FF  +  +R L I+   +K +     
Sbjct:   246 KSIEFINLGFTTKVDIDVNLLDPNDLSNRSMTRDFFTTISRVRSLVIRHGTIKDIFHYME 305

Query:   291 PSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNFW 350
                L + C  L+ LS   + ++LE     L LL+S P L+ L +     E          
Sbjct:   306 LEPLQQFCY-LSELSAVCSISNLE---MLLNLLKSCPKLESLSLKLVDYEKNKKEEVMSS 361

Query:   351 EVDHWTSLFSQLRMVKIVG-ISGIRSELEFIKFVLSNSPVLETMTIKPASL---EGGWDL 406
              V     L S L+ VK+   + G  +EL+  ++ L NS +LE +T+K   +   E   + 
Sbjct:   362 TVPP-PCLVSSLKFVKLESQLLGCGTELKVARYFLENSTILEKLTLKIDYMYKDEANVNH 420

Query:   407 IKELLR-FRRASARAEII 423
             I++ L    R S+  E++
Sbjct:   421 IRQTLHAVPRCSSTCEVV 438

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

TAIR|locus:2122754 AT4G10400 "AT4G10400" [Arabidopsis thaliana (taxid:3702)]

 Score = 259 (96.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 111/419 (26%), Positives = 191/419 (45%)

Query:    17 LDRLSSLPAHVIDQILSQLPIRDAVRTSVLSKKWRYKWATVPHLVFDNHCVSTSSQDQTF 76
             +DR+S LP  V+ +ILS +P + AV TS+LSK+W + W  +  L F +   S S     F
Sbjct:     1 MDRISGLPDEVLVKILSFVPTKVAVSTSILSKRWEFLWMWLTKLKFGSKRYSESE----F 56

Query:    77 IKNKLVNIVDHVLLLHNGPILK-FKLSHRDL-LGVSDIDRWILYMSRSCVKEF-ILEIWK 133
                +L   +D  L LH  P+++ F+L   D      DI  W++      ++E  I     
Sbjct:    57 --KRLQCFLDRNLPLHRAPVIESFRLVLSDSHFKPEDIRMWVVVAVSRYIRELKIYSSHY 114

Query:   134 GQRYKV-PSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHIT-LSQDVFENLIS 191
             G++  + PSSL+ C++L+ L+L   +L          +LK+L+L+ +    Q   + L+ 
Sbjct:   115 GEKQNILPSSLYTCKSLVILKLDGGVLLDVPRMVCLPSLKTLELKGVRYFKQGSLQRLLC 174

Query:   192 SSPTLERLT--LMNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVK 249
             + P LE L   L + D    L +  P+LQ   +          +T   +L+S  L     
Sbjct:   175 NCPVLEDLVVNLSHHDNMGKLTVIVPSLQRLSLSTPSSREFVIDT--PSLLSFQLVDRND 232

Query:   250 NDQAMGPGNSCKLLRFFVHLPH--IRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIR 307
             N       N  KL   ++++P   I+ L      +K LAI +         +  N+L   
Sbjct:   233 NSHTFLIENMPKLREAYINVPFADIKSLIGSITSVKRLAISSEVG-YGEGFI-FNHLEEL 290

Query:   308 INFNDLEENLAALCLLRSSPNLQELEMLARPEE-TGIGVLTNFWEVDHWTS--LFSQLRM 364
               +N    NL  +  L++SPNL+EL +++  ++   +G+L+  W         + S L+ 
Sbjct:   291 TLWNKYSSNLL-VWFLKNSPNLRELMLVSETDDHENLGMLS--WNQPSIVPECMLSSLQK 347

Query:   365 VKIVGISGIRSELEFIKFVLSNSPVLETMTIKPAS-LEGGWDLIKELLRFRRASARAEI 422
                    G   + +   ++L N+  L T TIK  + L    ++I EL    +AS+  E+
Sbjct:   348 FTWFKYLGRPQDRDIAVYILKNACRLRTATIKSDTRLFTKLEMITELRLSSQASSTCEL 406

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2161088 AT5G56370 "AT5G56370" [Arabidopsis thaliana (taxid:3702)]

 Score = 259 (96.2 bits), Expect = 4.2e-20, P = 4.2e-20
 Identities = 117/442 (26%), Positives = 195/442 (44%)

Query:    17 LDRLSSLPAHVIDQILSQLPIRDAVRTSVLSKKWRYKWATVPHLVFDNHCVSTSSQDQTF 76
             +D +S LP   + +ILS LP +D + TSVLSK+WRY W  VP L +    +  ++   TF
Sbjct:     1 MDSISLLPDDFLLRILSLLPTKDVLNTSVLSKRWRYLWKLVPKLQYS--LIDKNADHGTF 58

Query:    77 IKNKLVNIVDHVLLLHNGPILK---FKLSHRDLLGVSDIDRWI-LYMSRS-CVKEFILEI 131
             ++      VD  LLL   P+L+    KL  R    V DI  W+ + + +  C  +F  E 
Sbjct:    59 VR-----FVDRSLLLSMAPVLESLHLKLG-RQCSEV-DIGFWVRIAVEKGLCELDFDYEH 111

Query:   132 WKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHIT-LSQDVFENLI 190
             +K +  ++P SLF C  L  L+L N  LK       F+ LK+L L+++  L ++  + L+
Sbjct:   112 YKTEPCRLPQSLFTCGTLTVLKLKNVSLKDVQFPVCFKLLKTLHLEYVIFLDKETPQKLL 171

Query:   191 SSSPTLERLTLM----NFDGFTHLNIDAPNLQ-FFDIGGVFDDVTFENTF--HLALVSIG 243
             SS P LE   L     + D     ++  P+LQ F   GG   ++        +L L   G
Sbjct:   172 SSCPILEVFDLTRDDDDVDNVMSFSVMVPSLQRFIYCGGSGAELVMNTPSLKYLKLSGCG 231

Query:   244 LYVNVKNDQAMGPGN---SCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVD 300
                 + N   +   +   +C        L  ++RL +       L  G +  +L      
Sbjct:   232 YECMIGNLPEIVEAHVEVACSTDDILTSLASVKRLLLCLPTEPELPTGTIFHQLEH---- 287

Query:   301 LNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNFWEVDHWT---- 356
             L + S    ++ L      + +L+ SP L+ L++    E  G  +++    + HW     
Sbjct:   288 LEFCSCCTEWDIL------MFMLKHSPKLRSLKL---NETHGYTIVSQSDPMFHWEEPSS 338

Query:   357 ---SLFSQLRMVKIVGISGIRSELEFIKFVLSNSPVLETMTIKPASLEG---------G- 403
                +L   L  ++     G++ E E   F+L +S  L+  T  PA  +          G 
Sbjct:   339 VPETLMFVLETLEWRNYRGLKMENELASFLLKHSRRLKIATFSPADCKQVRIELRTTVGM 398

Query:   404 -WDLIKELLRFRRASARAEIIY 424
              + ++ EL R  R SA  E+++
Sbjct:   399 KYRILMELARLPRGSAECELVF 420

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2161053 AT5G56420 "AT5G56420" [Arabidopsis thaliana (taxid:3702)]

 Score = 227 (85.0 bits), Expect = 5.0e-20, Sum P(3) = 5.0e-20
 Identities = 67/208 (32%), Positives = 98/208 (47%)

Query:    18 DRLSSLPAHVIDQILSQLPIRDAVRTSVLSKKWRYKWATVPHLVFDNHCVSTSSQDQTFI 77
             DRLS LP   + QILS LP +D + TS+LSK+WR+ W  VP L +D         D T  
Sbjct:     6 DRLSQLPDDFLLQILSWLPTKDVLVTSLLSKRWRFLWTLVPRLNYDLRL-----HDNTC- 59

Query:    78 KNKLVNIVDHVLLLHNGPILK---FKLSHRDLLGVSDIDRWILYMSRSCVKEFILEIWKG 134
               +    VD  LLLH  P L+    K+         D+  W+       V+E  +    G
Sbjct:    60 -PRFSQFVDRSLLLHKAPTLESLNIKIGSICFTAEKDVGVWVRIGVDRFVRELSVSYCSG 118

Query:   135 QR-YKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHIT-LSQDVFENLISS 192
             +   ++P  LF C  L  L+L N  L+  S +  F++LK+L L  +  L       +ISS
Sbjct:   119 EEPIRLPKCLFTCSTLAVLKLENITLEDASCYVCFQSLKTLHLLDVKYLDDQSLPRIISS 178

Query:   193 SPTLERLTLMNF--DGFTHLNIDAPNLQ 218
               +LE L +     D    + + AP+L+
Sbjct:   179 CSSLEDLVVQRCPGDNVKVVTVTAPSLK 206

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2008276 AT1G51370 "AT1G51370" [Arabidopsis thaliana (taxid:3702)]

 Score = 254 (94.5 bits), Expect = 2.0e-19, P = 2.0e-19
 Identities = 116/442 (26%), Positives = 191/442 (43%)

Query:    12 KLETELDRLSSLPAHVIDQILSQLPIRDAVRTSVLSKKWRYKWATVPHLVFDNHCVSTSS 71
             K+  E DR+S LP  +I +IL  L  +D+VRTS LS KWRY W +VP L  D +  S + 
Sbjct:    13 KVSHEEDRISQLPEPLISEILFHLSTKDSVRTSALSTKWRYLWQSVPGLDLDPYASSNT- 71

Query:    72 QDQTFIKNKLVNIVDHVLLLHNGP-ILKFKLS---HRDLLGVSDIDRWILYMSRSCVKEF 127
                    N +V+ V+     H    I K +L    H D     D+  WI   +   ++  
Sbjct:    72 -------NTIVSFVESFFDSHRDSWIRKLRLDLGYHHDKY---DLMSWIDAATTRRIQH- 120

Query:   128 ILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITL-SQDVF 186
              L++      K+P S++ C  L+HL L   +L  P  F     LK +  ++++  ++   
Sbjct:   121 -LDVHCFHDNKIPLSIYTCTTLVHLRLRWAVLTNPE-FVSLPCLKIMHFENVSYPNETTL 178

Query:   187 ENLISSSPTLERLTLMN--FDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGL 244
             + LIS SP LE L L +  +     L + +  L+  DI    D V +     L  +   +
Sbjct:   179 QKLISGSPVLEELILFSTMYPKGNVLQLRSDTLKRLDINEFIDVVIYAPL--LQCLRAKM 236

Query:   245 YVNVKNDQAMGPGNSCKLLRFFVHLP--HIRRLEIQSYFLKYLAIGN--VPSRL------ 294
             Y + KN Q +  G   KL   FV+    + ++  I+   +    + +  + S        
Sbjct:   237 Y-STKNFQIISSGFPAKLDIDFVNTGGRYQKKKVIEDILIDISRVRDLVISSNTWKEFFL 295

Query:   295 ---PRPCVDLNYLSIRINFNDLEENLAAL-CLLRSSPNLQEL--EMLARPEETGIGVLTN 348
                 RP +   Y+S  +N      +L  L  LL S P L+ L  EM+        G    
Sbjct:   296 YSKSRPLLQFRYIS-HLNARFYISDLEMLPTLLESCPKLESLILEMVKNQSTRRHGEKRE 354

Query:   349 ---FWEVDHWTSLFSQLRMVKIV-GISGIRSELEFIKFVLSNSPVLETMTIKPA-SLEGG 403
                      W  L S L+ V++   I     E+E +++VL+NS VL+ + +    + +  
Sbjct:   355 PNVMVSTVPWC-LVSSLKFVELKRSIPRYEGEMELVRYVLTNSTVLKKLRLNVYYTKKAK 413

Query:   404 WDLIKELLRFRRASARAEIIYL 425
                + EL+   R S+   ++ L
Sbjct:   414 CAFLTELVAIPRCSSTCVVLVL 435

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2099019 AT3G58860 "AT3G58860" [Arabidopsis thaliana (taxid:3702)]

 Score = 222 (83.2 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
 Identities = 62/197 (31%), Positives = 99/197 (50%)

Query:    16 ELDRLSSLPAHVIDQILSQLPIRDAVRTSVLSKKWRYKWATVPHLVF-DNHCV--STSSQ 72
             ++D  S LP  VI  ILS LP ++A  TSVL+KKWRY +A VP L F D+  +      +
Sbjct:     5 KMDLFSKLPDEVISHILSSLPTKEAASTSVLAKKWRYLFAFVPSLDFNDSDFLHPQEGKR 64

Query:    73 DQTFIKNKLVNIVDHVLLLHNG-PILKFKLSHRDLLGVSDIDRWILYMSRSCVKEFILEI 131
             ++  I    ++ VD VL L    PI KF L+ +  +    +DRWI  + +  V    L +
Sbjct:    65 EKDGILRSFMDFVDRVLALQGASPIKKFSLNVKTGVDPDRVDRWICNVLQRGVSHLALFM 124

Query:   132 WKGQRYKVPSSLFLCQNLIHLEL---FNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFEN 188
                + Y +P  + + + L+ L+     +  L     F     LK+L L+ +   +  F+ 
Sbjct:   125 DFEEEYSLPYEISVSKTLVELKTGYGVDLYLWDDDMFLPM--LKTLVLESVEFGRGQFQT 182

Query:   189 LISSSPTLERLTLMNFD 205
             L+ + P LE L L+N +
Sbjct:   183 LLPACPVLEELMLLNME 199

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2083268 AT3G52680 "AT3G52680" [Arabidopsis thaliana (taxid:3702)]

 Score = 245 (91.3 bits), Expect = 2.9e-18, P = 2.9e-18
 Identities = 112/408 (27%), Positives = 181/408 (44%)

Query:    18 DRLSSLPAHVIDQILSQLPIRDAVRTSVLSKKWRYKWATVPHLVFDNHCVSTSSQDQTFI 77
             DR+S LP  ++ +ILS LP    V TSVLSK+WR  W  VP+L FD+      S+  TF 
Sbjct:    21 DRISELPDGLLLKILSSLPTNIVVATSVLSKQWRSLWKLVPNLEFDSD--DYESEHYTFS 78

Query:    78 KNKLVNIVDHVLLLHNGPILK-FKLSHRDLLGVSDIDRWI-LYMSRSCVKEFIL-----E 130
             +     IV    L H  P+L+ F+L   +   V DI  W+ +  SR  ++E +L     E
Sbjct:    79 E-----IVCKSFLSHKAPVLESFRLKFVNFNPV-DIGLWVGIAFSRH-LRELVLDFYPAE 131

Query:   131 IWKGQRYKVPSSLFLCQNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITLSQDV-FEN 188
             + KG  +  PSSL  C  L  L+L  C+L   PS     ++L++L L+ +    +    N
Sbjct:   132 LGKGVTFTFPSSLCTCNTLETLKLVLCILVDIPSPVL-MKSLRTLHLEFVRYKDESSVRN 190

Query:   189 LISSSPTLERLTLMNFDG--FTHLNIDAPNLQFFDIGGVFDDVTFEN-TFHLALVSIGLY 245
             L+S  P LE L L   D        I+ P+LQ   I    D   F     +   +   L 
Sbjct:   191 LLSGCPGLEELRLYRGDDSDIKVFTIEVPSLQRLTIHDNNDGPEFWGYVINAPFLKYLLI 250

Query:   246 VNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNV-----PSRLPRPCVD 300
               ++  +     N+ +L+    ++  +  + I+ +   + ++  +     P ++  P   
Sbjct:   251 EELRCPEFCL--NAPELVE--ANIAEVTSITIEKFLGSFTSVSRLLLNLSPLKITYPTGS 306

Query:   301 LNY--LSIRINFNDLEE-NLAALCLLRSSPNLQELEMLARPEETGI-GVLTNFWEV--DH 354
             + Y  +S+ +   + E  NL  L +L +SP LQ L++  R +     G+++  W    D 
Sbjct:   307 MFYQLVSLEMYTREAEWWNLLTL-MLENSPKLQVLKLTDRSQNFHKDGLVSGKWNEPKDV 365

Query:   355 WTSLFSQLRMVKIVGIS-GIRSELEFIKFVLSNSPVLETMTIKPASLE 401
                L SQL          G   E E   ++L N   L+  T     +E
Sbjct:   366 PECLLSQLETFVWRRFDWGREEEKEIATYILKNGRRLKKATFSTNPIE 413

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FZ70	FDL1_ARATH	No assigned EC number	0.4196	0.9302	0.9615	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	430
smart00579	72	smart00579, FBD, domain in FBox and BRCT domain co	8e-09
pfam08387	51	pfam08387, FBD, FBD	5e-07
pfam00646	48	pfam00646, F-box, F-box domain	6e-04
smart00256	41	smart00256, FBOX, A Receptor for Ubiquitination Ta	0.002

>gnl|CDD|214730 smart00579, FBD, domain in FBox and BRCT domain containing plant proteins

 Score = 51.8 bits (125), Expect = 8e-09
 Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 2/71 (2%)

Query: 357 SLFSQLRMVKIVGISGIRSELEFIKFVLSNSPVLETMTI--KPASLEGGWDLIKELLRFR 414
            L S L +++I G  G   E E +K+ L N+P L+ +TI  + +  E   +++KELL   
Sbjct: 2   CLLSSLEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTISVETSDDEEKLEILKELLSLP 61

Query: 415 RASARAEIIYL 425
           RAS+  ++ +L
Sbjct: 62  RASSSCQVQFL 72

Length = 72

>gnl|CDD|203925 pfam08387, FBD, FBD

 Score = 46.0 bits (110), Expect = 5e-07
 Identities = 17/39 (43%), Positives = 22/39 (56%)

Query: 357 SLFSQLRMVKIVGISGIRSELEFIKFVLSNSPVLETMTI 395
            L S L  V+  G  G   ELE  K++L N+ VL+ MTI
Sbjct: 11  CLLSSLETVEWRGYRGEEEELELAKYILENARVLKKMTI 49

This region is found in F-box (pfam00646) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes. In fact, several family members are annotated as being similar to transcription factors. Length = 51

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 37.2 bits (87), Expect = 6e-04
 Identities = 14/41 (34%), Positives = 25/41 (60%)

Query: 18 DRLSSLPAHVIDQILSQLPIRDAVRTSVLSKKWRYKWATVP 58
            L  LP  ++ +ILS+L  +D +R S++SK+WR    ++ 
Sbjct: 1  FSLLDLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLK 41

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets

 Score = 35.5 bits (83), Expect = 0.002
 Identities = 12/29 (41%), Positives = 21/29 (72%)

Query: 23 LPAHVIDQILSQLPIRDAVRTSVLSKKWR 51
          LP  ++++ILS+L  +D +R   +S+KWR
Sbjct: 1  LPDEILEEILSKLDPKDLLRLRKVSRKWR 29

Length = 41

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	430
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.8
KOG4341	483	consensus F-box protein containing LRR [General fu	99.63
smart00579	72	FBD domain in FBox and BRCT domain containing plan	99.24
PF08387	51	FBD: FBD; InterPro: IPR013596 This region is found	98.93
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.81
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.8
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.76
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.67
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.67
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.44
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.41
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.28
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.26
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.24
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.2
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.18
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.05
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.99
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.98
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.91
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.82
KOG4341	483	consensus F-box protein containing LRR [General fu	97.74
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.65
KOG0617	264	consensus Ras suppressor protein (contains leucine	97.6
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	97.48
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.35
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.34
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	97.29
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.26
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.23
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	97.18
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.14
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.14
KOG0617	264	consensus Ras suppressor protein (contains leucine	97.11
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.08
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	96.89
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	96.78
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	96.69
PF07723	26	LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Le	96.57
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	96.56
KOG0472	565	consensus Leucine-rich repeat protein [Function un	96.38
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	96.26
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.19
KOG0472	565	consensus Leucine-rich repeat protein [Function un	95.78
KOG2982	418	consensus Uncharacterized conserved protein [Funct	95.59
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	95.59
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	95.54
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	95.16
PLN03150	623	hypothetical protein; Provisional	94.97
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	94.8
KOG4237	498	consensus Extracellular matrix protein slit, conta	94.71
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	94.53
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	94.5
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	94.31
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	93.98
KOG2997	366	consensus F-box protein FBX9 [General function pre	92.89
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	92.13
PRK15386	426	type III secretion protein GogB; Provisional	91.91
KOG3864	221	consensus Uncharacterized conserved protein [Funct	91.74
KOG2123	388	consensus Uncharacterized conserved protein [Funct	91.74
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	91.72
PLN03150	623	hypothetical protein; Provisional	91.11
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	89.61
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	89.47
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	89.18
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	88.45
PF13013	109	F-box-like_2: F-box-like domain	86.93
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	86.58
PRK15386	426	type III secretion protein GogB; Provisional	86.36
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	86.28
KOG2123	388	consensus Uncharacterized conserved protein [Funct	86.18
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	85.87
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	85.45
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	84.75
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	83.91
KOG3864	221	consensus Uncharacterized conserved protein [Funct	83.01
PF08387	51	FBD: FBD; InterPro: IPR013596 This region is found	82.15
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	80.52

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.80  E-value=2.2e-20  Score=162.92  Aligned_cols=278  Identities=17%  Similarity=0.150  Sum_probs=187.2

Q ss_pred             cCCCcHHHHHHHHcCCCchhhhhhhhhhhhhHhhcCc---CCeeEEcCCCCCCCCcchhHhHhHHHHHHHHHHHhCCCce
Q 014150           20 LSSLPAHVIDQILSQLPIRDAVRTSVLSKKWRYKWAT---VPHLVFDNHCVSTSSQDQTFIKNKLVNIVDHVLLLHNGPI   96 (430)
Q Consensus        20 is~LPdelL~~Ils~L~~~d~~r~s~vskrWr~lw~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~l   96 (430)
                      +..|||||+..||+.|+.+|.++++.|||||.++-..   ...++.......         .    +...+++ ++.  |
T Consensus        98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~---------p----~~l~~l~-~rg--V  161 (419)
T KOG2120|consen   98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIH---------P----DVLGRLL-SRG--V  161 (419)
T ss_pred             cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeeccCCCccC---------h----hHHHHHH-hCC--e
Confidence            6789999999999999999999999999999875221   111222222111         1    1222222 332  5


Q ss_pred             eEEEEEeccCCCcchHHHHHHHHHhCCceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecCCC--CCCCCCCcceE
Q 014150           97 LKFKLSHRDLLGVSDIDRWILYMSRSCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPS--TFKGFRNLKSL  174 (430)
Q Consensus        97 ~~l~l~~~~~~~~~~v~~wl~~~~~~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L  174 (430)
                      ..|++........+.+....  ..+..++++++.......-.+.-.+..|.+|+.|+|.|+.+.++.  ....-.+|+.|
T Consensus       162 ~v~Rlar~~~~~prlae~~~--~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~l  239 (419)
T KOG2120|consen  162 IVFRLARSFMDQPRLAEHFS--PFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRL  239 (419)
T ss_pred             EEEEcchhhhcCchhhhhhh--hhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceee
Confidence            55555543222222222211  234568888887655444455556778999999999999998853  34467899999


Q ss_pred             EeeeEE-echhhHHHHhhcCccccceEeeccCCceEE-----EEeCCCcceEEEeccccce-------eeccCCCceEEE
Q 014150          175 DLQHIT-LSQDVFENLISSSPTLERLTLMNFDGFTHL-----NIDAPNLQFFDIGGVFDDV-------TFENTFHLALVS  241 (430)
Q Consensus       175 ~L~~~~-~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l-----~i~~p~L~~L~l~~~~~~~-------~~~~~p~L~~l~  241 (430)
                      +|+.+. ++..++..++++|..|.+|.|++|......     .--+++|+.|.+.|+...+       ....+|+|.+|+
T Consensus       240 nlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LD  319 (419)
T KOG2120|consen  240 NLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLD  319 (419)
T ss_pred             ccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeec
Confidence            999987 888889999999999999999999754432     1236899999999864322       234799999999


Q ss_pred             EEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHH
Q 014150          242 IGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALC  321 (430)
Q Consensus       242 i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~  321 (430)
                      ++++...          .+.+...+..++.|++|.++.++...-..-....    ..|.|.+|++..+..+.    .+.-
T Consensus       320 LSD~v~l----------~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~----s~psl~yLdv~g~vsdt----~mel  381 (419)
T KOG2120|consen  320 LSDSVML----------KNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELN----SKPSLVYLDVFGCVSDT----TMEL  381 (419)
T ss_pred             ccccccc----------CchHHHHHHhcchheeeehhhhcCCChHHeeeec----cCcceEEEEeccccCch----HHHH
Confidence            9877654          2244556778899999999887643211111111    35689999996654443    3566


Q ss_pred             HHhcCCCccEEE
Q 014150          322 LLRSSPNLQELE  333 (430)
Q Consensus       322 ll~~~p~L~~L~  333 (430)
                      +.+.||+|+.-.
T Consensus       382 ~~e~~~~lkin~  393 (419)
T KOG2120|consen  382 LKEMLSHLKINC  393 (419)
T ss_pred             HHHhCccccccc
Confidence            778889877543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.63  E-value=1.4e-17  Score=151.80  Aligned_cols=341  Identities=17%  Similarity=0.182  Sum_probs=204.1

Q ss_pred             CCcHHHHHHHHcCCCchhhhhhhhhhhhhHhh------cCcCCeeEEcCCCCCCCCcchhHhHhHHHHHHHHHHHhCCCc
Q 014150           22 SLPAHVIDQILSQLPIRDAVRTSVLSKKWRYK------WATVPHLVFDNHCVSTSSQDQTFIKNKLVNIVDHVLLLHNGP   95 (430)
Q Consensus        22 ~LPdelL~~Ils~L~~~d~~r~s~vskrWr~l------w~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~   95 (430)
                      .||.|++..|||+|+++..+|++++|+-|..+      |..+.-.+|..+..              ...|..++.+-.+.
T Consensus        74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~--------------g~VV~~~~~Rcgg~  139 (483)
T KOG4341|consen   74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVD--------------GGVVENMISRCGGF  139 (483)
T ss_pred             cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCC--------------CcceehHhhhhccc
Confidence            58999999999999999999999999999874      43333222221111              12233333333366


Q ss_pred             eeEEEEEeccCCCcchHHHHHHHHHhCCceEEEEEecCC-CcccCCCcccccCceeEEEEeeeeecCCC----CCCCCCC
Q 014150           96 ILKFKLSHRDLLGVSDIDRWILYMSRSCVKEFILEIWKG-QRYKVPSSLFLCQNLIHLELFNCLLKPPS----TFKGFRN  170 (430)
Q Consensus        96 l~~l~l~~~~~~~~~~v~~wl~~~~~~~l~~l~l~~~~~-~~~~lp~~~~~~~~L~~L~L~~~~~~~~~----~~~~~~~  170 (430)
                      ++.++++.+.......+....  ...+++++|.+..+.- ....+-.....|++|++|+|..|......    -..+||+
T Consensus       140 lk~LSlrG~r~v~~sslrt~~--~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  140 LKELSLRGCRAVGDSSLRTFA--SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK  217 (483)
T ss_pred             cccccccccccCCcchhhHHh--hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence            788888887666555554432  2456777776654431 11112222234677777777765322111    1125777


Q ss_pred             cceEEeeeEE-echhhHHHHhhcCccccceEeeccCCceE-----EEEeCCCcceEEEeccc--ccee---e-ccCCCce
Q 014150          171 LKSLDLQHIT-LSQDVFENLISSSPTLERLTLMNFDGFTH-----LNIDAPNLQFFDIGGVF--DDVT---F-ENTFHLA  238 (430)
Q Consensus       171 L~~L~L~~~~-~~~~~l~~l~s~cp~Le~L~l~~c~~~~~-----l~i~~p~L~~L~l~~~~--~~~~---~-~~~p~L~  238 (430)
                      |+.|+++++. +.+..+..+..+|..++++.+++|.....     +.-..+-+..+++..+.  .+..   + ..+..|+
T Consensus       218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq  297 (483)
T KOG4341|consen  218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ  297 (483)
T ss_pred             HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence            7777777776 66666777777777777777776654321     11122333333322221  0000   0 1245556


Q ss_pred             EEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHH
Q 014150          239 LVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLA  318 (430)
Q Consensus       239 ~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  318 (430)
                      .++.+.+...         ....+..+..++++|+.|.++.+..-   .......+...++.|+.|++..+....+.  .
T Consensus       298 ~l~~s~~t~~---------~d~~l~aLg~~~~~L~~l~l~~c~~f---sd~~ft~l~rn~~~Le~l~~e~~~~~~d~--t  363 (483)
T KOG4341|consen  298 VLCYSSCTDI---------TDEVLWALGQHCHNLQVLELSGCQQF---SDRGFTMLGRNCPHLERLDLEECGLITDG--T  363 (483)
T ss_pred             hhcccCCCCC---------chHHHHHHhcCCCceEEEeccccchh---hhhhhhhhhcCChhhhhhcccccceehhh--h
Confidence            6655544432         33455678889999999999876531   11112233446778999999766554432  5


Q ss_pred             HHHHHhcCCCccEEEEeecCCCCcccccccceecc--cccccccCceEEEEEeeecCccHHHHHHHHHccCCCcceEEEe
Q 014150          319 ALCLLRSSPNLQELEMLARPEETGIGVLTNFWEVD--HWTSLFSQLRMVKIVGISGIRSELEFIKFVLSNSPVLETMTIK  396 (430)
Q Consensus       319 l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~w~~~--~~~~~~~~L~~v~i~~~~~~~~e~~~~~~il~~~~~L~~l~i~  396 (430)
                      +..+-.+||.|++|.++.+......+      +..  ...|.+..|..+++.+......  + +-..+.++++||++.+.
T Consensus       364 L~sls~~C~~lr~lslshce~itD~g------i~~l~~~~c~~~~l~~lEL~n~p~i~d--~-~Le~l~~c~~Leri~l~  434 (483)
T KOG4341|consen  364 LASLSRNCPRLRVLSLSHCELITDEG------IRHLSSSSCSLEGLEVLELDNCPLITD--A-TLEHLSICRNLERIELI  434 (483)
T ss_pred             HhhhccCCchhccCChhhhhhhhhhh------hhhhhhccccccccceeeecCCCCchH--H-HHHHHhhCcccceeeee
Confidence            77788999999999999765432110      011  1346788999999988765321  2 22456788999999998


Q ss_pred             ecCCC
Q 014150          397 PASLE  401 (430)
Q Consensus       397 ~~~~~  401 (430)
                      .+..-
T Consensus       435 ~~q~v  439 (483)
T KOG4341|consen  435 DCQDV  439 (483)
T ss_pred             chhhh
Confidence            87643

>smart00579 FBD domain in FBox and BRCT domain containing plant proteins

Probab=99.24  E-value=2.1e-11  Score=87.49  Aligned_cols=69  Identities=33%  Similarity=0.602  Sum_probs=61.6

Q ss_pred             ccccCceEEEEEeeecCccHHHHHHHHHccCCCcceEEEeecC--CCchhHHHHHhhhcccccCCcEEEEe
Q 014150          357 SLFSQLRMVKIVGISGIRSELEFIKFVLSNSPVLETMTIKPAS--LEGGWDLIKELLRFRRASARAEIIYL  425 (430)
Q Consensus       357 ~~~~~L~~v~i~~~~~~~~e~~~~~~il~~~~~L~~l~i~~~~--~~~~~~~~~~l~~~~r~s~~~~~~~~  425 (430)
                      |..++|+.|+|.+|.|...|+++++||++||+.||+|+|....  .+....+.++|..++|+|+.|++.|.
T Consensus         2 cl~~~Lk~v~i~~f~g~~~e~~~~~~il~~a~~Lk~~~i~~~~~~~~~~~~i~~~L~~~~~aS~~c~i~~~   72 (72)
T smart00579        2 CLLSSLEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTISVETSDDDEKLEILKELLSLPRASSSCQVQFL   72 (72)
T ss_pred             cchheEEEEEEEeccCcHHHHHHHHHHHhcchhheEEEEEeecCCccHHHHHHHHHHhCcCCCCceEEEeC
Confidence            6788999999999999999999999999999999999999765  33446778899999999999999874

>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members

Probab=98.93  E-value=1.2e-09  Score=71.95  Aligned_cols=42  Identities=48%  Similarity=0.772  Sum_probs=40.9

Q ss_pred             ccccccCceEEEEEeeecCccHHHHHHHHHccCCCcceEEEe
Q 014150          355 WTSLFSQLRMVKIVGISGIRSELEFIKFVLSNSPVLETMTIK  396 (430)
Q Consensus       355 ~~~~~~~L~~v~i~~~~~~~~e~~~~~~il~~~~~L~~l~i~  396 (430)
                      ++|..++|+.|++.+|.|...|+++++|+++||+.||+|+|.
T Consensus         9 p~Cl~s~Lk~v~~~~f~g~~~e~~f~~yil~na~~Lk~m~i~   50 (51)
T PF08387_consen    9 PECLLSHLKFVEIKGFRGEENELEFAKYILENAPVLKKMTIS   50 (51)
T ss_pred             ccchhheeEEEEEEeeeCcHHHHHHHHHHHhhhhhhcEEEEE
Confidence            889999999999999999999999999999999999999996

Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.81  E-value=5.9e-09  Score=113.27  Aligned_cols=122  Identities=20%  Similarity=0.178  Sum_probs=68.8

Q ss_pred             CCceEEEEEecCCCcccCCCccc-ccCceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceE
Q 014150          122 SCVKEFILEIWKGQRYKVPSSLF-LCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLT  200 (430)
Q Consensus       122 ~~l~~l~l~~~~~~~~~lp~~~~-~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~  200 (430)
                      +.++.|++..... ...+|..++ .+++|++|+|++|.+........+++|++|+|+++.+... +...+..+++|+.|+
T Consensus        93 ~~L~~L~Ls~n~~-~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~-~p~~~~~l~~L~~L~  170 (968)
T PLN00113         93 PYIQTINLSNNQL-SGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGE-IPNDIGSFSSLKVLD  170 (968)
T ss_pred             CCCCEEECCCCcc-CCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCccccc-CChHHhcCCCCCEEE
Confidence            5677776653321 124666555 6777888888877765433334677777777777766533 334456677777777


Q ss_pred             eeccCCceEE---EEeCCCcceEEEecccc----ceeeccCCCceEEEEEEE
Q 014150          201 LMNFDGFTHL---NIDAPNLQFFDIGGVFD----DVTFENTFHLALVSIGLY  245 (430)
Q Consensus       201 l~~c~~~~~l---~i~~p~L~~L~l~~~~~----~~~~~~~p~L~~l~i~~~  245 (430)
                      +.++.-...+   --..++|++|++.++.-    ...+.++++|+.|+++.+
T Consensus       171 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n  222 (968)
T PLN00113        171 LGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYN  222 (968)
T ss_pred             CccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCC
Confidence            7765422111   11235666666654321    112345566666666543

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.80  E-value=3.5e-09  Score=68.81  Aligned_cols=35  Identities=37%  Similarity=0.627  Sum_probs=31.0

Q ss_pred             cCCCcHHHHHHHHcCCCchhhhhhhhhhhhhHhhc
Q 014150           20 LSSLPAHVIDQILSQLPIRDAVRTSVLSKKWRYKW   54 (430)
Q Consensus        20 is~LPdelL~~Ils~L~~~d~~r~s~vskrWr~lw   54 (430)
                      |+.||+|++.+||++|+.+|.++++.|||+|+++.
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~   35 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIA   35 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHH
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999865

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.76  E-value=6.1e-09  Score=98.21  Aligned_cols=248  Identities=17%  Similarity=0.080  Sum_probs=121.7

Q ss_pred             CceEEEEEecCCC---cccCCCcccccCceeEEEEeeeeecC-C-------CCCCCCCCcceEEeeeEEechh---hHHH
Q 014150          123 CVKEFILEIWKGQ---RYKVPSSLFLCQNLIHLELFNCLLKP-P-------STFKGFRNLKSLDLQHITLSQD---VFEN  188 (430)
Q Consensus       123 ~l~~l~l~~~~~~---~~~lp~~~~~~~~L~~L~L~~~~~~~-~-------~~~~~~~~L~~L~L~~~~~~~~---~l~~  188 (430)
                      +++++.+..+...   ...++..+...++|+.|+++++.+.. +       ..+..+++|+.|+|.++.+...   .+..
T Consensus        24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~  103 (319)
T cd00116          24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES  103 (319)
T ss_pred             hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence            4666666544321   11234444455667777776665431 1       1233466777777766665422   2223


Q ss_pred             HhhcCccccceEeeccCCceEEEEeCCCcceEEEecccc--ceeeccC-CCceEEEEEEEeeccccccCCCCCcchHHHH
Q 014150          189 LISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDIGGVFD--DVTFENT-FHLALVSIGLYVNVKNDQAMGPGNSCKLLRF  265 (430)
Q Consensus       189 l~s~cp~Le~L~l~~c~~~~~l~i~~p~L~~L~l~~~~~--~~~~~~~-p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~  265 (430)
                      +..+ ++|++|.+.+|....               ....  ...+..+ ++|+++++..+.....       ....+...
T Consensus       104 l~~~-~~L~~L~ls~~~~~~---------------~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~-------~~~~~~~~  160 (319)
T cd00116         104 LLRS-SSLQELKLNNNGLGD---------------RGLRLLAKGLKDLPPALEKLVLGRNRLEGA-------SCEALAKA  160 (319)
T ss_pred             Hhcc-CcccEEEeeCCccch---------------HHHHHHHHHHHhCCCCceEEEcCCCcCCch-------HHHHHHHH
Confidence            3333 456666666553210               0000  0112334 6677777765442200       11223445


Q ss_pred             hccCCCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCCCCcccc
Q 014150          266 FVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGV  345 (430)
Q Consensus       266 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~  345 (430)
                      +..+++|++|+++.+.+...........++ .+++|++|+++.+.........+...+..+|+|+.|++.++.-...   
T Consensus       161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~-~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~---  236 (319)
T cd00116         161 LRANRDLKELNLANNGIGDAGIRALAEGLK-ANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDA---  236 (319)
T ss_pred             HHhCCCcCEEECcCCCCchHHHHHHHHHHH-hCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchH---
Confidence            666778888888776544211100000111 2357888888655433334445666677788888888887653210   


Q ss_pred             cccceecccccccccCceEEEEEeeecCc-cHHHHHHHHHccCCCcceEEEeecC
Q 014150          346 LTNFWEVDHWTSLFSQLRMVKIVGISGIR-SELEFIKFVLSNSPVLETMTIKPAS  399 (430)
Q Consensus       346 ~~~~w~~~~~~~~~~~L~~v~i~~~~~~~-~e~~~~~~il~~~~~L~~l~i~~~~  399 (430)
                      ..... ..........|+.+.+.+..-.. ....+++ .+.+.+.|+.+.+..+.
T Consensus       237 ~~~~l-~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~-~~~~~~~L~~l~l~~N~  289 (319)
T cd00116         237 GAAAL-ASALLSPNISLLTLSLSCNDITDDGAKDLAE-VLAEKESLLELDLRGNK  289 (319)
T ss_pred             HHHHH-HHHHhccCCCceEEEccCCCCCcHHHHHHHH-HHhcCCCccEEECCCCC
Confidence            00000 00000013577777776543221 2333444 34555788888887765

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.67  E-value=1.1e-08  Score=96.55  Aligned_cols=64  Identities=23%  Similarity=0.262  Sum_probs=39.4

Q ss_pred             cccccCceeEEEEeeeeecC--CCCCCCC---CCcceEEeeeEEechhhHHH---HhhcC-ccccceEeeccC
Q 014150          142 SLFLCQNLIHLELFNCLLKP--PSTFKGF---RNLKSLDLQHITLSQDVFEN---LISSS-PTLERLTLMNFD  205 (430)
Q Consensus       142 ~~~~~~~L~~L~L~~~~~~~--~~~~~~~---~~L~~L~L~~~~~~~~~l~~---l~s~c-p~Le~L~l~~c~  205 (430)
                      .+..+++|+.|++++|.+..  +..+..+   ++|+.|++.++.+++.....   .+..+ ++|++|.+.+|.
T Consensus        76 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~  148 (319)
T cd00116          76 GLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR  148 (319)
T ss_pred             HHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc
Confidence            34456788888888876642  1122222   45888888888776543333   34445 777888877764

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.67  E-value=2.8e-08  Score=108.01  Aligned_cols=81  Identities=20%  Similarity=0.155  Sum_probs=49.0

Q ss_pred             CCceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccce
Q 014150          122 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERL  199 (430)
Q Consensus       122 ~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L  199 (430)
                      .+++.|++..+.. ...+|..+..+++|+.|+|++|.+..  |..+.++++|+.|+|.++.+.+. +...+..+++|+.|
T Consensus       188 ~~L~~L~L~~n~l-~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L  265 (968)
T PLN00113        188 TSLEFLTLASNQL-VGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGP-IPSSLGNLKNLQYL  265 (968)
T ss_pred             cCCCeeeccCCCC-cCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccc-cChhHhCCCCCCEE
Confidence            4667777654321 12356666666777777777776543  44456677777777777765433 33445566677777


Q ss_pred             Eeecc
Q 014150          200 TLMNF  204 (430)
Q Consensus       200 ~l~~c  204 (430)
                      .+.++
T Consensus       266 ~L~~n  270 (968)
T PLN00113        266 FLYQN  270 (968)
T ss_pred             ECcCC
Confidence            76655

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.44  E-value=5.1e-08  Score=93.66  Aligned_cols=104  Identities=18%  Similarity=0.173  Sum_probs=58.3

Q ss_pred             CceeEEEEEeccCCCcchHHHHHHHHHhCCceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecC--CCCCCCCCCc
Q 014150           94 GPILKFKLSHRDLLGVSDIDRWILYMSRSCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNL  171 (430)
Q Consensus        94 ~~l~~l~l~~~~~~~~~~v~~wl~~~~~~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L  171 (430)
                      +.+..+.+......+   |.+- ...+-+-++.+++.......+..|.. -.-.+++.|+|++|++..  ...|.++.+|
T Consensus       125 ghl~~L~L~~N~I~s---v~se-~L~~l~alrslDLSrN~is~i~~~sf-p~~~ni~~L~La~N~It~l~~~~F~~lnsL  199 (873)
T KOG4194|consen  125 GHLEKLDLRHNLISS---VTSE-ELSALPALRSLDLSRNLISEIPKPSF-PAKVNIKKLNLASNRITTLETGHFDSLNSL  199 (873)
T ss_pred             cceeEEeeecccccc---ccHH-HHHhHhhhhhhhhhhchhhcccCCCC-CCCCCceEEeeccccccccccccccccchh
Confidence            457777777643222   2111 00112346666665433222222221 112678888888887765  3456777788


Q ss_pred             ceEEeeeEEechhhHHHHhhcCccccceEeec
Q 014150          172 KSLDLQHITLSQDVFENLISSSPTLERLTLMN  203 (430)
Q Consensus       172 ~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~  203 (430)
                      .+|.|+.++++.-. ...+.+.|+||.|.|..
T Consensus       200 ~tlkLsrNrittLp-~r~Fk~L~~L~~LdLnr  230 (873)
T KOG4194|consen  200 LTLKLSRNRITTLP-QRSFKRLPKLESLDLNR  230 (873)
T ss_pred             eeeecccCcccccC-HHHhhhcchhhhhhccc
Confidence            88888888776432 34566678888887774

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.41  E-value=8.4e-08  Score=62.68  Aligned_cols=37  Identities=41%  Similarity=0.675  Sum_probs=31.3

Q ss_pred             cCCCcHHHHHHHHcCCCchhhhhhhhhhhhhHhhcCc
Q 014150           20 LSSLPAHVIDQILSQLPIRDAVRTSVLSKKWRYKWAT   56 (430)
Q Consensus        20 is~LPdelL~~Ils~L~~~d~~r~s~vskrWr~lw~~   56 (430)
                      +++||+|++.+||++|+.+|.++++.|||+|+.+..+
T Consensus         3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~   39 (48)
T PF00646_consen    3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDS   39 (48)
T ss_dssp             HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTT
T ss_pred             HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcC
Confidence            6789999999999999999999999999999997654

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.28  E-value=6.9e-07  Score=56.07  Aligned_cols=34  Identities=35%  Similarity=0.744  Sum_probs=31.5

Q ss_pred             CcHHHHHHHHcCCCchhhhhhhhhhhhhHhhcCc
Q 014150           23 LPAHVIDQILSQLPIRDAVRTSVLSKKWRYKWAT   56 (430)
Q Consensus        23 LPdelL~~Ils~L~~~d~~r~s~vskrWr~lw~~   56 (430)
                      ||+|++..||++|+.+|.++++.|||+|+.+...
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~   34 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDS   34 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence            7999999999999999999999999999987543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.26  E-value=8e-08  Score=92.37  Aligned_cols=79  Identities=20%  Similarity=0.216  Sum_probs=37.7

Q ss_pred             CCceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccce
Q 014150          122 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERL  199 (430)
Q Consensus       122 ~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L  199 (430)
                      .++++|.+........+... +.+..+|.+|+|+.|++..  +..|.++|.|+.|+|..+.+.--. ..-+.+.|+|+.|
T Consensus       173 ~ni~~L~La~N~It~l~~~~-F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive-~ltFqgL~Sl~nl  250 (873)
T KOG4194|consen  173 VNIKKLNLASNRITTLETGH-FDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVE-GLTFQGLPSLQNL  250 (873)
T ss_pred             CCceEEeecccccccccccc-ccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeeh-hhhhcCchhhhhh
Confidence            35666666544332222211 1223466666666666543  234555666666666666543110 1113445555555


Q ss_pred             Eee
Q 014150          200 TLM  202 (430)
Q Consensus       200 ~l~  202 (430)
                      .+.
T Consensus       251 klq  253 (873)
T KOG4194|consen  251 KLQ  253 (873)
T ss_pred             hhh
Confidence            554

>PLN03210 Resistant to P

Probab=98.24  E-value=2.8e-06  Score=93.45  Aligned_cols=81  Identities=20%  Similarity=0.229  Sum_probs=38.9

Q ss_pred             ccccCceeEEEEeeee-ecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEE--EeCCCcce
Q 014150          143 LFLCQNLIHLELFNCL-LKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLN--IDAPNLQF  219 (430)
Q Consensus       143 ~~~~~~L~~L~L~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~--i~~p~L~~  219 (430)
                      +..+++|+.|+|+++. +...+.+..+++|++|+|.+|..-. .+...+..+++|+.|.+.+|..+..+.  +..++|+.
T Consensus       630 ~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~-~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~  708 (1153)
T PLN03210        630 VHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLV-ELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYR  708 (1153)
T ss_pred             cccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCcc-ccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCE
Confidence            3344555555555442 2222234455666666666554211 123334455666666666665443322  12345555


Q ss_pred             EEEec
Q 014150          220 FDIGG  224 (430)
Q Consensus       220 L~l~~  224 (430)
                      |.+.|
T Consensus       709 L~Lsg  713 (1153)
T PLN03210        709 LNLSG  713 (1153)
T ss_pred             EeCCC
Confidence            55554

syringae 6; Provisional

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.20  E-value=1.7e-06  Score=78.50  Aligned_cols=165  Identities=22%  Similarity=0.211  Sum_probs=100.1

Q ss_pred             CCCCcceEEeeeEEech---hhHHHHhhcCccccceEeeccCCc----------------eEEEEeCCCcceEEEeccc-
Q 014150          167 GFRNLKSLDLQHITLSQ---DVFENLISSSPTLERLTLMNFDGF----------------THLNIDAPNLQFFDIGGVF-  226 (430)
Q Consensus       167 ~~~~L~~L~L~~~~~~~---~~l~~l~s~cp~Le~L~l~~c~~~----------------~~l~i~~p~L~~L~l~~~~-  226 (430)
                      .+|.|++|+|+.+.+..   ..+..++++|..|++|.+.+|-..                ....-..|.|+.+....+. 
T Consensus        90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl  169 (382)
T KOG1909|consen   90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL  169 (382)
T ss_pred             cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence            44555555555555432   356778888888888888887311                1122345788888775421 


Q ss_pred             ---cc----eeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeehhhcccCCCCCCcccc
Q 014150          227 ---DD----VTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCV  299 (430)
Q Consensus       227 ---~~----~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  299 (430)
                         +.    ..+...|.|+.+.+.......-       ....+..-+..+++|+.|+|..+++...........++ .++
T Consensus       170 en~ga~~~A~~~~~~~~leevr~~qN~I~~e-------G~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~-s~~  241 (382)
T KOG1909|consen  170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPE-------GVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALS-SWP  241 (382)
T ss_pred             ccccHHHHHHHHHhccccceEEEecccccCc-------hhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhc-ccc
Confidence               11    1245668888888865443210       11344566788999999999988765321111111233 567


Q ss_pred             ccceeEEEEeeCChhh-HHHHHHHHhcCCCccEEEEeecCC
Q 014150          300 DLNYLSIRINFNDLEE-NLAALCLLRSSPNLQELEMLARPE  339 (430)
Q Consensus       300 ~L~~L~l~~~~~~~~~-~~~l~~ll~~~p~L~~L~l~~~~~  339 (430)
                      +|+.|+++.|...... ..-+..+-+..|+|+.|.+.++..
T Consensus       242 ~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeI  282 (382)
T KOG1909|consen  242 HLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEI  282 (382)
T ss_pred             hheeecccccccccccHHHHHHHHhccCCCCceeccCcchh
Confidence            8888888776543332 223445667789999999988764

>PLN03210 Resistant to P

Probab=98.18  E-value=4.2e-06  Score=92.01  Aligned_cols=99  Identities=17%  Similarity=0.184  Sum_probs=51.8

Q ss_pred             cCceeEEEEeeeeecC-CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEEE---eCCCcceEE
Q 014150          146 CQNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNI---DAPNLQFFD  221 (430)
Q Consensus       146 ~~~L~~L~L~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~i---~~p~L~~L~  221 (430)
                      ..+|+.|++.++.+.. +.++..+++|+.|+|.++..-.. +.. ++.+++|+.|.+.+|..+..+.-   ..++|+.|.
T Consensus       610 ~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~-ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~  687 (1153)
T PLN03210        610 PENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKE-IPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD  687 (1153)
T ss_pred             ccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCc-CCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence            3556666666655443 33445667777777765531111 111 44567777777777765443321   235666777


Q ss_pred             Eecccc--cee-eccCCCceEEEEEEEe
Q 014150          222 IGGVFD--DVT-FENTFHLALVSIGLYV  246 (430)
Q Consensus       222 l~~~~~--~~~-~~~~p~L~~l~i~~~~  246 (430)
                      +.++..  .+. ..++++|+.|++..|.
T Consensus       688 L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~  715 (1153)
T PLN03210        688 MSRCENLEILPTGINLKSLYRLNLSGCS  715 (1153)
T ss_pred             CCCCCCcCccCCcCCCCCCCEEeCCCCC
Confidence            665321  111 1145666666666543

syringae 6; Provisional

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.05  E-value=6.2e-06  Score=73.34  Aligned_cols=225  Identities=17%  Similarity=0.171  Sum_probs=138.4

Q ss_pred             ceeEEEEeeeeecCCCCC---C-CCCCcceEEeeeEEech-hhHHHHhhcCccccceEeeccCC---ceEEEEeCCCcce
Q 014150          148 NLIHLELFNCLLKPPSTF---K-GFRNLKSLDLQHITLSQ-DVFENLISSSPTLERLTLMNFDG---FTHLNIDAPNLQF  219 (430)
Q Consensus       148 ~L~~L~L~~~~~~~~~~~---~-~~~~L~~L~L~~~~~~~-~~l~~l~s~cp~Le~L~l~~c~~---~~~l~i~~p~L~~  219 (430)
                      .+.-|.+.++.++....+   + .+..++.|+|.++.+++ +.+..++.+.|.|+.|.|+...-   +..+.....+|++
T Consensus        46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~  125 (418)
T KOG2982|consen   46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV  125 (418)
T ss_pred             chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence            344556666666553322   1 57889999999999864 67889999999999999985322   2223334568999


Q ss_pred             EEEeccccc-----eeeccCCCceEEEEEEEeec---cccccCC---------------CCCcchHHHHhccCCCccEEE
Q 014150          220 FDIGGVFDD-----VTFENTFHLALVSIGLYVNV---KNDQAMG---------------PGNSCKLLRFFVHLPHIRRLE  276 (430)
Q Consensus       220 L~l~~~~~~-----~~~~~~p~L~~l~i~~~~~~---~~~~~~~---------------~~~~~~~~~~l~~~~~L~~L~  276 (430)
                      |-+.|..-+     ..+.++|.++++.++.....   ......+               ...+.+..++...+||+..+.
T Consensus       126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~  205 (418)
T KOG2982|consen  126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVF  205 (418)
T ss_pred             EEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhee
Confidence            999885322     24568899999988765221   1100000               001223456667789999999


Q ss_pred             EeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCCCCcccccccceeccccc
Q 014150          277 IQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNFWEVDHWT  356 (430)
Q Consensus       277 l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~w~~~~~~  356 (430)
                      ++.+.++..+.+....    .|+.+.-|++.....  +.+.++ .-|..+|.|..|.+..++--.    ...+-++..  
T Consensus       206 v~e~PlK~~s~ek~se----~~p~~~~LnL~~~~i--dswasv-D~Ln~f~~l~dlRv~~~Pl~d----~l~~~err~--  272 (418)
T KOG2982|consen  206 VCEGPLKTESSEKGSE----PFPSLSCLNLGANNI--DSWASV-DALNGFPQLVDLRVSENPLSD----PLRGGERRF--  272 (418)
T ss_pred             eecCcccchhhcccCC----CCCcchhhhhccccc--ccHHHH-HHHcCCchhheeeccCCcccc----cccCCcceE--
Confidence            9999888766654433    455666777743322  222233 357889999999998876431    111101111  


Q ss_pred             ccccCceEEEEEe---ee---cCccHHHHHHHHHc
Q 014150          357 SLFSQLRMVKIVG---IS---GIRSELEFIKFVLS  385 (430)
Q Consensus       357 ~~~~~L~~v~i~~---~~---~~~~e~~~~~~il~  385 (430)
                      -...+|..|++.+   +.   ...+|+.|++|.+.
T Consensus       273 llIaRL~~v~vLNGskIss~er~dSEr~fVRyym~  307 (418)
T KOG2982|consen  273 LLIARLTKVQVLNGSKISSRERKDSERRFVRYYMS  307 (418)
T ss_pred             EEEeeccceEEecCcccchhhhhhhHHHHHHHHhh
Confidence            1234555555554   22   23688899999887

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.99  E-value=5.6e-07  Score=83.81  Aligned_cols=203  Identities=18%  Similarity=0.121  Sum_probs=94.5

Q ss_pred             CceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecCCC----CCCCCCCcceEEeeeEEechhhHHHHhhcCccccc
Q 014150          123 CVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPS----TFKGFRNLKSLDLQHITLSQDVFENLISSSPTLER  198 (430)
Q Consensus       123 ~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~  198 (430)
                      +++++.++.+.......-.-.-.|++++.|+|+.+-+....    -...+|+|+.|+|+.+.+.-..-.......++|+.
T Consensus       122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~  201 (505)
T KOG3207|consen  122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQ  201 (505)
T ss_pred             hhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhhe
Confidence            45555555443321111122345677777777766554311    11256777777777766321100011113556666


Q ss_pred             eEeeccCC----ceEEEEeCCCcceEEEecccc----ceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCC
Q 014150          199 LTLMNFDG----FTHLNIDAPNLQFFDIGGVFD----DVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLP  270 (430)
Q Consensus       199 L~l~~c~~----~~~l~i~~p~L~~L~l~~~~~----~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~  270 (430)
                      |.|..|.-    +..+....|+|+.|.+.+...    .....-...|++|+++.....+..+          ....+.+|
T Consensus       202 L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~----------~~~~~~l~  271 (505)
T KOG3207|consen  202 LVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQ----------GYKVGTLP  271 (505)
T ss_pred             EEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccc----------cccccccc
Confidence            77776632    222344566777666655421    1112234456666665544332210          12245666


Q ss_pred             CccEEEEeeeeeehhhcccC-CCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecC
Q 014150          271 HIRRLEIQSYFLKYLAIGNV-PSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARP  338 (430)
Q Consensus       271 ~L~~L~l~~~~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~  338 (430)
                      .|+-|.++.+.+..+...+. .......|++|++|.+......  ++..+ .=++..++|+.|.+..+.
T Consensus       272 ~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~--~w~sl-~~l~~l~nlk~l~~~~n~  337 (505)
T KOG3207|consen  272 GLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR--DWRSL-NHLRTLENLKHLRITLNY  337 (505)
T ss_pred             chhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc--ccccc-chhhccchhhhhhccccc
Confidence            77777776665544322211 0011125667777777432111  11111 123445666666655543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.98  E-value=1.1e-06  Score=78.05  Aligned_cols=156  Identities=16%  Similarity=0.164  Sum_probs=86.9

Q ss_pred             CcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEE---EeCCCcceEEEeccc------cceeeccCCCceEE
Q 014150          170 NLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLN---IDAPNLQFFDIGGVF------DDVTFENTFHLALV  240 (430)
Q Consensus       170 ~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~---i~~p~L~~L~l~~~~------~~~~~~~~p~L~~l  240 (430)
                      .|+.|+|+...++...+..+++.|..|+.|.|.+..--..+.   ....+|+.|++.++.      ....+.+|..|.+|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            355555555555555566666666666666655432111100   112345555554432      23346788889999


Q ss_pred             EEEEEeeccccccCCCCCcchHHHHhccC-CCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHH
Q 014150          241 SIGLYVNVKNDQAMGPGNSCKLLRFFVHL-PHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAA  319 (430)
Q Consensus       241 ~i~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l  319 (430)
                      ++++|+..          .+.+..+.... ++++.|.|++..-. +... ....+...+|+|.+|+++-+..-.+   ++
T Consensus       266 NlsWc~l~----------~~~Vtv~V~hise~l~~LNlsG~rrn-l~~s-h~~tL~~rcp~l~~LDLSD~v~l~~---~~  330 (419)
T KOG2120|consen  266 NLSWCFLF----------TEKVTVAVAHISETLTQLNLSGYRRN-LQKS-HLSTLVRRCPNLVHLDLSDSVMLKN---DC  330 (419)
T ss_pred             CchHhhcc----------chhhhHHHhhhchhhhhhhhhhhHhh-hhhh-HHHHHHHhCCceeeeccccccccCc---hH
Confidence            98887642          22333444444 78888888765321 1111 1122334678888888865533323   34


Q ss_pred             HHHHhcCCCccEEEEeecCCC
Q 014150          320 LCLLRSSPNLQELEMLARPEE  340 (430)
Q Consensus       320 ~~ll~~~p~L~~L~l~~~~~~  340 (430)
                      ...+-.+|.|++|+++.|...
T Consensus       331 ~~~~~kf~~L~~lSlsRCY~i  351 (419)
T KOG2120|consen  331 FQEFFKFNYLQHLSLSRCYDI  351 (419)
T ss_pred             HHHHHhcchheeeehhhhcCC
Confidence            445666888888888887643

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.91  E-value=1.4e-06  Score=81.17  Aligned_cols=180  Identities=18%  Similarity=0.056  Sum_probs=114.5

Q ss_pred             hCCceEEEEEecCCCcc-cCCCcccccCceeEEEEeeeeecCCCCC---CCCCCcceEEeeeEEechhhHHHHhhcCccc
Q 014150          121 RSCVKEFILEIWKGQRY-KVPSSLFLCQNLIHLELFNCLLKPPSTF---KGFRNLKSLDLQHITLSQDVFENLISSSPTL  196 (430)
Q Consensus       121 ~~~l~~l~l~~~~~~~~-~lp~~~~~~~~L~~L~L~~~~~~~~~~~---~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~L  196 (430)
                      ..++++|++...--..+ .+-..+...++|+.|+|+.|.+..+.+-   .-++.|++|.|.+|.++..++..++..||+|
T Consensus       145 ~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl  224 (505)
T KOG3207|consen  145 LPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSL  224 (505)
T ss_pred             CCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcH
Confidence            46788887753211111 1222233568999999999988764321   2589999999999999999999999999999


Q ss_pred             cceEeeccCCceEEEEe---CCCcceEEEeccc----cce-eeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhcc
Q 014150          197 ERLTLMNFDGFTHLNID---APNLQFFDIGGVF----DDV-TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVH  268 (430)
Q Consensus       197 e~L~l~~c~~~~~l~i~---~p~L~~L~l~~~~----~~~-~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~  268 (430)
                      +.|.+........-...   ...|+.|++.+..    ... ....+|.|..|.+..+...+...    ++... ......
T Consensus       225 ~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~----~d~~s-~~kt~~  299 (505)
T KOG3207|consen  225 EVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAE----PDVES-LDKTHT  299 (505)
T ss_pred             HHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcC----CCccc-hhhhcc
Confidence            99999976432111111   2478888888732    222 34578888888887665433221    12221 222467


Q ss_pred             CCCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEe
Q 014150          269 LPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRIN  309 (430)
Q Consensus       269 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  309 (430)
                      +++|+.|.+..+.+..+..-....    ..+||++|.+...
T Consensus       300 f~kL~~L~i~~N~I~~w~sl~~l~----~l~nlk~l~~~~n  336 (505)
T KOG3207|consen  300 FPKLEYLNISENNIRDWRSLNHLR----TLENLKHLRITLN  336 (505)
T ss_pred             cccceeeecccCccccccccchhh----ccchhhhhhcccc
Confidence            899999999877664322211111    3457777776443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.82  E-value=7.8e-06  Score=74.27  Aligned_cols=154  Identities=12%  Similarity=0.078  Sum_probs=95.9

Q ss_pred             eccCCCceEEEEEEEeeccccccCCCCCcch---------HHHHhccCCCccEEEEeeeeeehhhcccCCCCCCcccccc
Q 014150          231 FENTFHLALVSIGLYVNVKNDQAMGPGNSCK---------LLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDL  301 (430)
Q Consensus       231 ~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~---------~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L  301 (430)
                      +.++..|++|.+..|.-...       -+..         ..+....-++|+++..+.+.+..-..- ......+..+.|
T Consensus       116 l~s~~~L~eL~L~N~Glg~~-------ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~-~~A~~~~~~~~l  187 (382)
T KOG1909|consen  116 LSSCTDLEELYLNNCGLGPE-------AGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGAT-ALAEAFQSHPTL  187 (382)
T ss_pred             HHhccCHHHHhhhcCCCChh-------HHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHH-HHHHHHHhcccc
Confidence            45688899999987654311       1111         233455678899999988876531110 000011134578


Q ss_pred             ceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCCC--CcccccccceecccccccccCceEEEEEeee-cCccHHH
Q 014150          302 NYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEE--TGIGVLTNFWEVDHWTSLFSQLRMVKIVGIS-GIRSELE  378 (430)
Q Consensus       302 ~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~--~~~~~~~~~w~~~~~~~~~~~L~~v~i~~~~-~~~~e~~  378 (430)
                      +.+.+.........+..+..-+.+||+|+.|+|+.+...  +....+       ..-+..++|+++.+.++- .++.-.+
T Consensus       188 eevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La-------kaL~s~~~L~El~l~dcll~~~Ga~a  260 (382)
T KOG1909|consen  188 EEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA-------KALSSWPHLRELNLGDCLLENEGAIA  260 (382)
T ss_pred             ceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH-------HHhcccchheeecccccccccccHHH
Confidence            888886655555555677788999999999999988754  111100       011244567777777652 3456678


Q ss_pred             HHHHHHccCCCcceEEEeecC
Q 014150          379 FIKFVLSNSPVLETMTIKPAS  399 (430)
Q Consensus       379 ~~~~il~~~~~L~~l~i~~~~  399 (430)
                      ++..+-+.+|.|+.+.+.++.
T Consensus       261 ~~~al~~~~p~L~vl~l~gNe  281 (382)
T KOG1909|consen  261 FVDALKESAPSLEVLELAGNE  281 (382)
T ss_pred             HHHHHhccCCCCceeccCcch
Confidence            888888888888888877654

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.74  E-value=5.9e-07  Score=83.18  Aligned_cols=203  Identities=16%  Similarity=0.183  Sum_probs=118.9

Q ss_pred             CCceEEEEEecCCCcc-cCCCcccccCceeEEEEeeeeecCCCCC----CCCCCcceEEeeeEE-echhhHHHHhhcCcc
Q 014150          122 SCVKEFILEIWKGQRY-KVPSSLFLCQNLIHLELFNCLLKPPSTF----KGFRNLKSLDLQHIT-LSQDVFENLISSSPT  195 (430)
Q Consensus       122 ~~l~~l~l~~~~~~~~-~lp~~~~~~~~L~~L~L~~~~~~~~~~~----~~~~~L~~L~L~~~~-~~~~~l~~l~s~cp~  195 (430)
                      .-++++.+..+....+ .+-.....|++++.|.+.+|.......+    ..|++|+.|+|..|. +++..+..+..+||+
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK  217 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence            4578888876654333 2333445789999999888864332221    268999999999966 777788888889999


Q ss_pred             ccceEeeccCCceEEEE-----eCCCcceEEEeccccc--eee----ccCCCceEEEEEEEeeccccccCCCCCcchHHH
Q 014150          196 LERLTLMNFDGFTHLNI-----DAPNLQFFDIGGVFDD--VTF----ENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLR  264 (430)
Q Consensus       196 Le~L~l~~c~~~~~l~i-----~~p~L~~L~l~~~~~~--~~~----~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~  264 (430)
                      |+.|.+++|+.++.-.+     .+.+++.+...|+...  -.+    ..++.+.++++..+...         ++..+..
T Consensus       218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~l---------TD~~~~~  288 (483)
T KOG4341|consen  218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQL---------TDEDLWL  288 (483)
T ss_pred             HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccc---------cchHHHH
Confidence            99999999976654211     2334555544553221  001    13444555554444332         2233444


Q ss_pred             HhccCCCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecC
Q 014150          265 FFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARP  338 (430)
Q Consensus       265 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~  338 (430)
                      +-.++..|+.|..++.....   ......+...+++|+.|.+..+..-.+  .++..+-++||.|+.|+++.+.
T Consensus       289 i~~~c~~lq~l~~s~~t~~~---d~~l~aLg~~~~~L~~l~l~~c~~fsd--~~ft~l~rn~~~Le~l~~e~~~  357 (483)
T KOG4341|consen  289 IACGCHALQVLCYSSCTDIT---DEVLWALGQHCHNLQVLELSGCQQFSD--RGFTMLGRNCPHLERLDLEECG  357 (483)
T ss_pred             HhhhhhHhhhhcccCCCCCc---hHHHHHHhcCCCceEEEeccccchhhh--hhhhhhhcCChhhhhhcccccc
Confidence            44556667777776554310   011112233456788777755532111  1456667788888888777654

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.65  E-value=1.2e-05  Score=67.78  Aligned_cols=78  Identities=27%  Similarity=0.236  Sum_probs=26.5

Q ss_pred             CceEEEEEecCCCcccCCCccc-ccCceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEe
Q 014150          123 CVKEFILEIWKGQRYKVPSSLF-LCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTL  201 (430)
Q Consensus       123 ~l~~l~l~~~~~~~~~lp~~~~-~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l  201 (430)
                      ++++|+++......+   ..+. .+.+|+.|+|++|.+..-.++..+++|++|+++++.++.-. ..+...||+|++|.+
T Consensus        20 ~~~~L~L~~n~I~~I---e~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L~~L~L   95 (175)
T PF14580_consen   20 KLRELNLRGNQISTI---ENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSIS-EGLDKNLPNLQELYL   95 (175)
T ss_dssp             -------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-C-HHHHHH-TT--EEE-
T ss_pred             ccccccccccccccc---cchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccc-cchHHhCCcCCEEEC
Confidence            567777765443222   1233 45789999999999887677888999999999999886421 223456899999998


Q ss_pred             ecc
Q 014150          202 MNF  204 (430)
Q Consensus       202 ~~c  204 (430)
                      .+.
T Consensus        96 ~~N   98 (175)
T PF14580_consen   96 SNN   98 (175)
T ss_dssp             TTS
T ss_pred             cCC
Confidence            853

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=97.60  E-value=1e-06  Score=71.97  Aligned_cols=156  Identities=22%  Similarity=0.215  Sum_probs=103.2

Q ss_pred             ccccCceeEEEEeeeeecC-CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEEEeCCCcceEE
Q 014150          143 LFLCQNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFD  221 (430)
Q Consensus       143 ~~~~~~L~~L~L~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~i~~p~L~~L~  221 (430)
                      +++....+.|.|+++.+.. |+....+.+|+.|++.++.+.  .+..-+++.|.|+.|.+.-    ..+.+         
T Consensus        29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie--~lp~~issl~klr~lnvgm----nrl~~---------   93 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE--ELPTSISSLPKLRILNVGM----NRLNI---------   93 (264)
T ss_pred             ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh--hcChhhhhchhhhheecch----hhhhc---------
Confidence            5677888999999998765 566778999999999998775  3455578888888887761    11111         


Q ss_pred             EeccccceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeehhhcccCCCCCCcccccc
Q 014150          222 IGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDL  301 (430)
Q Consensus       222 l~~~~~~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L  301 (430)
                           ..--|+.+|.|+.|++.+.......      -.++    +-.+..|+.|.++.+..+         .+|+...+|
T Consensus        94 -----lprgfgs~p~levldltynnl~e~~------lpgn----ff~m~tlralyl~dndfe---------~lp~dvg~l  149 (264)
T KOG0617|consen   94 -----LPRGFGSFPALEVLDLTYNNLNENS------LPGN----FFYMTTLRALYLGDNDFE---------ILPPDVGKL  149 (264)
T ss_pred             -----CccccCCCchhhhhhcccccccccc------CCcc----hhHHHHHHHHHhcCCCcc---------cCChhhhhh
Confidence                 1113677899999999876543221      1112    223455677778776554         334455567


Q ss_pred             ceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCC
Q 014150          302 NYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPE  339 (430)
Q Consensus       302 ~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~  339 (430)
                      +.|++-.--  .+++..++.=++....|+.|+|+++.-
T Consensus       150 t~lqil~lr--dndll~lpkeig~lt~lrelhiqgnrl  185 (264)
T KOG0617|consen  150 TNLQILSLR--DNDLLSLPKEIGDLTRLRELHIQGNRL  185 (264)
T ss_pred             cceeEEeec--cCchhhCcHHHHHHHHHHHHhccccee
Confidence            777763221  234556777778888899999998753

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=97.48  E-value=1.6e-06  Score=84.34  Aligned_cols=184  Identities=20%  Similarity=0.180  Sum_probs=100.9

Q ss_pred             ecCCCcccCCCcccccCceeEEEEeeeeecC-C-CCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCce
Q 014150          131 IWKGQRYKVPSSLFLCQNLIHLELFNCLLKP-P-STFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFT  208 (430)
Q Consensus       131 ~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~-~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~  208 (430)
                      ++....-+.|..+....++..|+|++|.+.. | +-|.++..|--|+|++++..  .+.--+.....|++|.|++.+-..
T Consensus       110 LShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe--~LPPQ~RRL~~LqtL~Ls~NPL~h  187 (1255)
T KOG0444|consen  110 LSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE--MLPPQIRRLSMLQTLKLSNNPLNH  187 (1255)
T ss_pred             cchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh--hcCHHHHHHhhhhhhhcCCChhhH
Confidence            3333344566655555666667777666554 2 22445566666666666542  122223334456666666543211


Q ss_pred             EEEEeCC---CcceEEEecccc-----ceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeee
Q 014150          209 HLNIDAP---NLQFFDIGGVFD-----DVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSY  280 (430)
Q Consensus       209 ~l~i~~p---~L~~L~l~~~~~-----~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~  280 (430)
                      ----..|   +|..|.+++...     ..++.++.+|..++++..            +-+.+.+.+-.+++|+.|.|+++
T Consensus       188 fQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N------------~Lp~vPecly~l~~LrrLNLS~N  255 (1255)
T KOG0444|consen  188 FQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN------------NLPIVPECLYKLRNLRRLNLSGN  255 (1255)
T ss_pred             HHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc------------CCCcchHHHhhhhhhheeccCcC
Confidence            0000112   333344444221     123456677777777543            23444566778899999999988


Q ss_pred             eeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCC
Q 014150          281 FLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPE  339 (430)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~  339 (430)
                      .+..+..+..      ...+|+.|+++..     .+..++.-+-..|+|++|.+..+.-
T Consensus       256 ~iteL~~~~~------~W~~lEtLNlSrN-----QLt~LP~avcKL~kL~kLy~n~NkL  303 (1255)
T KOG0444|consen  256 KITELNMTEG------EWENLETLNLSRN-----QLTVLPDAVCKLTKLTKLYANNNKL  303 (1255)
T ss_pred             ceeeeeccHH------HHhhhhhhccccc-----hhccchHHHhhhHHHHHHHhccCcc
Confidence            7765443322      3457888888543     2335666777788888887766543

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.35  E-value=8.7e-05  Score=51.00  Aligned_cols=57  Identities=35%  Similarity=0.441  Sum_probs=38.4

Q ss_pred             CceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeecc
Q 014150          147 QNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNF  204 (430)
Q Consensus       147 ~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c  204 (430)
                      ++|++|++++|.+..  +..|.++++|++|+++++.+..- -...+.++|+|+.|.++++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i-~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSI-PPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEE-ETTTTTTSTTESEEEETSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCcc-CHHHHcCCCCCCEEeCcCC
Confidence            467778888776654  34567788888888887776422 1234667788888877765

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.34  E-value=9.7e-05  Score=75.96  Aligned_cols=155  Identities=17%  Similarity=0.231  Sum_probs=90.6

Q ss_pred             CCcceEEEecccc------ceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeehhhcc
Q 014150          215 PNLQFFDIGGVFD------DVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIG  288 (430)
Q Consensus       215 p~L~~L~l~~~~~------~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~  288 (430)
                      .+|++|++.|...      ...-.-+|+|+.|.+++...          ..+.+..+..++|||..|++++..+..+ . 
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~----------~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~-  189 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQF----------DNDDFSQLCASFPNLRSLDISGTNISNL-S-  189 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCcee----------cchhHHHHhhccCccceeecCCCCccCc-H-
Confidence            4677777776211      11112478888888875443          2344677888899999999987766543 1 


Q ss_pred             cCCCCCCccccccceeEE-EEeeCChhhHHHHHHHHhcCCCccEEEEeecCCCCcccccccceecccccccccCceEEEE
Q 014150          289 NVPSRLPRPCVDLNYLSI-RINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNFWEVDHWTSLFSQLRMVKI  367 (430)
Q Consensus       289 ~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~w~~~~~~~~~~~L~~v~i  367 (430)
                          ++. .+.||+.|.+ +..+....+   +.. |-++.+|+.|+|+.............|     .+|. ..|.++++
T Consensus       190 ----GIS-~LknLq~L~mrnLe~e~~~~---l~~-LF~L~~L~vLDIS~~~~~~~~~ii~qY-----lec~-~~LpeLrf  254 (699)
T KOG3665|consen  190 ----GIS-RLKNLQVLSMRNLEFESYQD---LID-LFNLKKLRVLDISRDKNNDDTKIIEQY-----LECG-MVLPELRF  254 (699)
T ss_pred             ----HHh-ccccHHHHhccCCCCCchhh---HHH-HhcccCCCeeeccccccccchHHHHHH-----HHhc-ccCccccE
Confidence                122 3556666666 444444333   332 334788888888886643111111111     2332 12445555


Q ss_pred             EeeecCccHHHHHHHHHccCCCcceEEEe
Q 014150          368 VGISGIRSELEFIKFVLSNSPVLETMTIK  396 (430)
Q Consensus       368 ~~~~~~~~e~~~~~~il~~~~~L~~l~i~  396 (430)
                      .+..|..-..+++..+++.=|+|+.+..-
T Consensus       255 LDcSgTdi~~~~le~ll~sH~~L~~i~~~  283 (699)
T KOG3665|consen  255 LDCSGTDINEEILEELLNSHPNLQQIAAL  283 (699)
T ss_pred             EecCCcchhHHHHHHHHHhCccHhhhhhh
Confidence            55667776777888888877878777743

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=97.29  E-value=0.00041  Score=71.94  Aligned_cols=58  Identities=17%  Similarity=0.223  Sum_probs=31.6

Q ss_pred             cCCCcccccCceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeecc
Q 014150          138 KVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNF  204 (430)
Q Consensus       138 ~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c  204 (430)
                      .+|..+.  ++|+.|.+.+|.+..-+.  ..++|++|+|.++.++.  +..   ..++|++|.+.++
T Consensus       215 sLP~~l~--~~L~~L~L~~N~Lt~LP~--lp~~Lk~LdLs~N~Lts--LP~---lp~sL~~L~Ls~N  272 (788)
T PRK15387        215 TLPDCLP--AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTS--LPV---LPPGLLELSIFSN  272 (788)
T ss_pred             cCCcchh--cCCCEEEccCCcCCCCCC--CCCCCcEEEecCCccCc--ccC---cccccceeeccCC
Confidence            4565443  367777777766654221  24677777777765542  111   1345666666554

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.26  E-value=0.0001  Score=75.76  Aligned_cols=158  Identities=23%  Similarity=0.245  Sum_probs=95.2

Q ss_pred             CceeEEEEeeeeecC---CCCC-CCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEEEeCCCcceEEE
Q 014150          147 QNLIHLELFNCLLKP---PSTF-KGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDI  222 (430)
Q Consensus       147 ~~L~~L~L~~~~~~~---~~~~-~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~i~~p~L~~L~l  222 (430)
                      .+|++|+++|...-.   +... .-||+|++|.+++..+..+++..+..++|+|..|+|+++. +..+            
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl------------  188 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL------------  188 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc------------
Confidence            689999998863322   1111 2589999999999998767688889999999999998763 2221            


Q ss_pred             eccccceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeehhh--cccCCCCCCccccc
Q 014150          223 GGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLA--IGNVPSRLPRPCVD  300 (430)
Q Consensus       223 ~~~~~~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~~~~~  300 (430)
                      .|      +..+++|+.|.+......         +...+.. +-++.+|+.|+++........  .... ......+|+
T Consensus       189 ~G------IS~LknLq~L~mrnLe~e---------~~~~l~~-LF~L~~L~vLDIS~~~~~~~~~ii~qY-lec~~~Lpe  251 (699)
T KOG3665|consen  189 SG------ISRLKNLQVLSMRNLEFE---------SYQDLID-LFNLKKLRVLDISRDKNNDDTKIIEQY-LECGMVLPE  251 (699)
T ss_pred             HH------HhccccHHHHhccCCCCC---------chhhHHH-HhcccCCCeeeccccccccchHHHHHH-HHhcccCcc
Confidence            00      223444555544322211         2233333 345788888888754321100  0000 012224679


Q ss_pred             cceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeec
Q 014150          301 LNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLAR  337 (430)
Q Consensus       301 L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~  337 (430)
                      |+.|+.+....+.   ..+..+++.-|+|+...+-.+
T Consensus       252 LrfLDcSgTdi~~---~~le~ll~sH~~L~~i~~~~~  285 (699)
T KOG3665|consen  252 LRFLDCSGTDINE---EILEELLNSHPNLQQIAALDC  285 (699)
T ss_pred             ccEEecCCcchhH---HHHHHHHHhCccHhhhhhhhh
Confidence            9999997543332   257788898999998776654

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.23  E-value=5.1e-05  Score=75.79  Aligned_cols=144  Identities=19%  Similarity=0.196  Sum_probs=85.7

Q ss_pred             CCCCcceEEeeeEE-echhhHHHHhhcCccccceEeecc-CCceEEEEeCCCcceEEEeccccceeeccCCCceEEEEEE
Q 014150          167 GFRNLKSLDLQHIT-LSQDVFENLISSSPTLERLTLMNF-DGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGL  244 (430)
Q Consensus       167 ~~~~L~~L~L~~~~-~~~~~l~~l~s~cp~Le~L~l~~c-~~~~~l~i~~p~L~~L~l~~~~~~~~~~~~p~L~~l~i~~  244 (430)
                      .+|+|+.|.+..+. +.+..+..+...|+.|++|.+..| .....             .+.........+++|+.+++..
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-------------~~~~~~~~~~~~~~L~~l~l~~  252 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITL-------------SPLLLLLLLSICRKLKSLDLSG  252 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCccccccc-------------chhHhhhhhhhcCCcCccchhh
Confidence            47888888888775 566567777788888888888774 11110             0000111223456777777766


Q ss_pred             EeeccccccCCCCCcchHHHHhccCCCccEEEEeeeee-ehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHH
Q 014150          245 YVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFL-KYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLL  323 (430)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll  323 (430)
                      +...         .+..+..+...+++|++|.+..+.. ..    .....+...+++|++|++..+....+  .++..+.
T Consensus       253 ~~~i---------sd~~l~~l~~~c~~L~~L~l~~c~~lt~----~gl~~i~~~~~~L~~L~l~~c~~~~d--~~l~~~~  317 (482)
T KOG1947|consen  253 CGLV---------TDIGLSALASRCPNLETLSLSNCSNLTD----EGLVSIAERCPSLRELDLSGCHGLTD--SGLEALL  317 (482)
T ss_pred             hhcc---------CchhHHHHHhhCCCcceEccCCCCccch----hHHHHHHHhcCcccEEeeecCccchH--HHHHHHH
Confidence            5532         3344455555688888888665442 11    11112233567888888876644322  2466678


Q ss_pred             hcCCCccEEEEeecC
Q 014150          324 RSSPNLQELEMLARP  338 (430)
Q Consensus       324 ~~~p~L~~L~l~~~~  338 (430)
                      .+||+|+.|.+....
T Consensus       318 ~~c~~l~~l~~~~~~  332 (482)
T KOG1947|consen  318 KNCPNLRELKLLSLN  332 (482)
T ss_pred             HhCcchhhhhhhhcC
Confidence            889988887765544

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=97.18  E-value=3.8e-06  Score=81.82  Aligned_cols=76  Identities=25%  Similarity=0.381  Sum_probs=42.7

Q ss_pred             EEEEecCCCcccCCCccc-ccCceeEEEEeeeeecC-CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeec
Q 014150          127 FILEIWKGQRYKVPSSLF-LCQNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMN  203 (430)
Q Consensus       127 l~l~~~~~~~~~lp~~~~-~~~~L~~L~L~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~  203 (430)
                      +.++++...-..+|..++ +...|-.|+|++|++.. |+....+.+|++|.|+++....-.+.. +.+..+|+.|.+++
T Consensus       129 iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQ-LPsmtsL~vLhms~  206 (1255)
T KOG0444|consen  129 IVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQ-LPSMTSLSVLHMSN  206 (1255)
T ss_pred             EEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhc-Cccchhhhhhhccc
Confidence            344444444345666554 45677777777777654 444556777777777777654332222 23344455555543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.14  E-value=0.00024  Score=59.98  Aligned_cols=66  Identities=20%  Similarity=0.209  Sum_probs=26.0

Q ss_pred             ccCCCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEe-eCChhhHHHHHHHHhcCCCccEEEEeecC
Q 014150          267 VHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRIN-FNDLEENLAALCLLRSSPNLQELEMLARP  338 (430)
Q Consensus       267 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~ll~~~p~L~~L~l~~~~  338 (430)
                      ..+|+|++|.++++.+..+..-   ..+. .+++|+.|++... ......  --..++..+|+|+.|+-....
T Consensus        85 ~~lp~L~~L~L~~N~I~~l~~l---~~L~-~l~~L~~L~L~~NPv~~~~~--YR~~vi~~lP~Lk~LD~~~V~  151 (175)
T PF14580_consen   85 KNLPNLQELYLSNNKISDLNEL---EPLS-SLPKLRVLSLEGNPVCEKKN--YRLFVIYKLPSLKVLDGQDVT  151 (175)
T ss_dssp             HH-TT--EEE-TTS---SCCCC---GGGG-G-TT--EEE-TT-GGGGSTT--HHHHHHHH-TT-SEETTEETT
T ss_pred             HhCCcCCEEECcCCcCCChHHh---HHHH-cCCCcceeeccCCcccchhh--HHHHHHHHcChhheeCCEEcc
Confidence            3466677777766655432211   1111 4566776666322 111111  233467889999988765543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.14  E-value=6.6e-05  Score=74.98  Aligned_cols=129  Identities=22%  Similarity=0.282  Sum_probs=82.2

Q ss_pred             CceeEEEEEeccCCCcchHHHHHHHHHhCCceEEEEEec-C---CCcccCCCcccccCceeEEEEeeeeecCCCCC----
Q 014150           94 GPILKFKLSHRDLLGVSDIDRWILYMSRSCVKEFILEIW-K---GQRYKVPSSLFLCQNLIHLELFNCLLKPPSTF----  165 (430)
Q Consensus        94 ~~l~~l~l~~~~~~~~~~v~~wl~~~~~~~l~~l~l~~~-~---~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~----  165 (430)
                      ..++++.+..........+..+..  ..+.++++++..+ .   ............|.+|+.|+++++....+.++    
T Consensus       188 ~~L~~l~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  188 PLLKRLSLSGCSKITDDSLDALAL--KCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             chhhHhhhcccccCChhhHHHHHh--hCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            345556665543323222333332  3468889888642 1   11111222344679999999999873322222    


Q ss_pred             CCCCCcceEEeeeEE-echhhHHHHhhcCccccceEeeccCCceE-----EEEeCCCcceEEEec
Q 014150          166 KGFRNLKSLDLQHIT-LSQDVFENLISSSPTLERLTLMNFDGFTH-----LNIDAPNLQFFDIGG  224 (430)
Q Consensus       166 ~~~~~L~~L~L~~~~-~~~~~l~~l~s~cp~Le~L~l~~c~~~~~-----l~i~~p~L~~L~l~~  224 (430)
                      ..||+|++|.+..+. ++++++..+...||.|++|.+.+|..+..     +...+|+|+.|.+.+
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~  330 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS  330 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence            249999999988888 89999999999999999999999976532     223366666665443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=97.11  E-value=2.3e-05  Score=64.26  Aligned_cols=125  Identities=23%  Similarity=0.185  Sum_probs=78.5

Q ss_pred             EecCCCcccCCCcccccCceeEEEEeeeeecC-CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCce
Q 014150          130 EIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFT  208 (430)
Q Consensus       130 ~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~  208 (430)
                      +++..+-.++|..+.+.++|+.|+++-+++.. |.+|+.||.|+.|+|.++..+...+..-+-....|+-|.+.+.+.  
T Consensus        62 n~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndf--  139 (264)
T KOG0617|consen   62 NLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF--  139 (264)
T ss_pred             hcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCc--
Confidence            33444446789988999999999999887654 778999999999999998877665544333445566666665321  


Q ss_pred             EEEEeCCCcceEEEeccccceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeeh
Q 014150          209 HLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKY  284 (430)
Q Consensus       209 ~l~i~~p~L~~L~l~~~~~~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  284 (430)
                        ++-.              -.++.+.+|+.|.+......            .+.+-++.+..|+.|.+.++.+..
T Consensus       140 --e~lp--------------~dvg~lt~lqil~lrdndll------------~lpkeig~lt~lrelhiqgnrl~v  187 (264)
T KOG0617|consen  140 --EILP--------------PDVGKLTNLQILSLRDNDLL------------SLPKEIGDLTRLRELHIQGNRLTV  187 (264)
T ss_pred             --ccCC--------------hhhhhhcceeEEeeccCchh------------hCcHHHHHHHHHHHHhcccceeee
Confidence              1111              12334445555544332221            112335666778888888777653

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.08  E-value=0.00036  Score=62.45  Aligned_cols=65  Identities=23%  Similarity=0.394  Sum_probs=39.7

Q ss_pred             ccCCCcccccCceeEEEEeeeeec--------C--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeec
Q 014150          137 YKVPSSLFLCQNLIHLELFNCLLK--------P--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMN  203 (430)
Q Consensus       137 ~~lp~~~~~~~~L~~L~L~~~~~~--------~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~  203 (430)
                      +++...+--|..|+.|..++..-+        .  +.++..|.+|+++.++.|.  .+.+..+...=|.|..+++.+
T Consensus       172 ~d~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~--~~~i~~~~~~kptl~t~~v~~  246 (490)
T KOG1259|consen  172 YDFSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALS--TENIVDIELLKPTLQTICVHN  246 (490)
T ss_pred             cchHHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccc--hhheeceeecCchhheeeeec
Confidence            344443334678888888764211        0  1223357888888887773  344555566678888888775

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=96.89  E-value=0.001  Score=69.03  Aligned_cols=57  Identities=18%  Similarity=0.071  Sum_probs=31.7

Q ss_pred             CCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCCC
Q 014150          270 PHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEE  340 (430)
Q Consensus       270 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~  340 (430)
                      ++|+.|+++++.+..         +|..+.+|+.|+++.+.     +..++.-+..+++|+.|++++++-.
T Consensus       402 s~L~~LdLS~N~Lss---------IP~l~~~L~~L~Ls~Nq-----Lt~LP~sl~~L~~L~~LdLs~N~Ls  458 (788)
T PRK15387        402 SELKELMVSGNRLTS---------LPMLPSGLLSLSVYRNQ-----LTRLPESLIHLSSETTVNLEGNPLS  458 (788)
T ss_pred             cCCCEEEccCCcCCC---------CCcchhhhhhhhhccCc-----ccccChHHhhccCCCeEECCCCCCC
Confidence            456666666655431         22223356666663321     1234555667888888888877543

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=96.78  E-value=0.00014  Score=74.31  Aligned_cols=69  Identities=22%  Similarity=0.329  Sum_probs=35.8

Q ss_pred             chHHHHHHHHHhCCceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecC-CCCCCCCCCcceEEeeeEEec
Q 014150          110 SDIDRWILYMSRSCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITLS  182 (430)
Q Consensus       110 ~~v~~wl~~~~~~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~~L~~L~L~~~~~~  182 (430)
                      ..+..|+.  ...+++-+.....  ....+|..++...+|+.|+...|.+.- |....++.+|++|+|..+.+.
T Consensus       254 ~~lp~wi~--~~~nle~l~~n~N--~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~  323 (1081)
T KOG0618|consen  254 SNLPEWIG--ACANLEALNANHN--RLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLP  323 (1081)
T ss_pred             hcchHHHH--hcccceEecccch--hHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcccc
Confidence            33445553  2344444443321  123455555555566666666555443 222335778888888887653

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=96.69  E-value=0.0022  Score=66.79  Aligned_cols=52  Identities=23%  Similarity=0.227  Sum_probs=27.5

Q ss_pred             CceeEEEEeeeeecC-CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeecc
Q 014150          147 QNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNF  204 (430)
Q Consensus       147 ~~L~~L~L~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c  204 (430)
                      ++|+.|+|++|.+.. |..  .+++|++|+|.++.+..  +...+  .+.|+.|.+.+|
T Consensus       199 ~~L~~L~Ls~N~LtsLP~~--l~~nL~~L~Ls~N~Lts--LP~~l--~~~L~~L~Ls~N  251 (754)
T PRK15370        199 EQITTLILDNNELKSLPEN--LQGNIKTLYANSNQLTS--IPATL--PDTIQEMELSIN  251 (754)
T ss_pred             cCCcEEEecCCCCCcCChh--hccCCCEEECCCCcccc--CChhh--hccccEEECcCC
Confidence            456777777766554 222  23567777776665541  11111  235666666655

>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.57  E-value=0.003  Score=34.76  Aligned_cols=25  Identities=36%  Similarity=0.688  Sum_probs=22.1

Q ss_pred             CcceEEeeeEEechh-hHHHHhhcCc
Q 014150          170 NLKSLDLQHITLSQD-VFENLISSSP  194 (430)
Q Consensus       170 ~L~~L~L~~~~~~~~-~l~~l~s~cp  194 (430)
                      +||+|+|.++.+.++ .++.++++||
T Consensus         1 sLKtL~L~~v~f~~~~~l~~LlS~CP   26 (26)
T PF07723_consen    1 SLKTLHLDSVVFSDEDSLERLLSGCP   26 (26)
T ss_pred             CCeEEEeeEEEECChhHHHHhhccCc
Confidence            589999999998655 7999999998

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=96.56  E-value=0.0015  Score=67.96  Aligned_cols=60  Identities=17%  Similarity=0.122  Sum_probs=32.0

Q ss_pred             CCccEEEEeeeeeehhhcccCCCCCCccc-cccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCC
Q 014150          270 PHIRRLEIQSYFLKYLAIGNVPSRLPRPC-VDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPE  339 (430)
Q Consensus       270 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~  339 (430)
                      ++|+.|+|+++.+..         +|..+ .+|+.|+++.+....- -..++.++..+|++..|.+.+++.
T Consensus       367 ~~L~~LdLs~N~Lt~---------LP~~l~~sL~~LdLs~N~L~~L-P~sl~~~~~~~~~l~~L~L~~Npl  427 (754)
T PRK15370        367 PTITTLDVSRNALTN---------LPENLPAALQIMQASRNNLVRL-PESLPHFRGEGPQPTRIIVEYNPF  427 (754)
T ss_pred             CCcCEEECCCCcCCC---------CCHhHHHHHHHHhhccCCcccC-chhHHHHhhcCCCccEEEeeCCCc
Confidence            456666666554431         12111 2466666643321110 013566677778888888887764

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=96.38  E-value=0.00088  Score=62.44  Aligned_cols=65  Identities=22%  Similarity=0.324  Sum_probs=41.2

Q ss_pred             HHHHHhCCceEE-EEEecCCCcccCCCcccccCceeEEEEeeeeecC-CCCCCCCCCcceEEeeeEEe
Q 014150          116 ILYMSRSCVKEF-ILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITL  181 (430)
Q Consensus       116 l~~~~~~~l~~l-~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~~L~~L~L~~~~~  181 (430)
                      +.+...+.+.++ .+++.....-++|..+.-..+|.+|+++++.+.. |..++++ .|+.|.+.++.+
T Consensus       243 lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPl  309 (565)
T KOG0472|consen  243 LPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPL  309 (565)
T ss_pred             hHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCch
Confidence            344444444332 2344444445677776667788888888887766 6677777 888888887764

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=96.26  E-value=0.0036  Score=42.83  Aligned_cols=56  Identities=27%  Similarity=0.310  Sum_probs=42.2

Q ss_pred             CceEEEEEecCCCcccCCCcc-cccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEE
Q 014150          123 CVKEFILEIWKGQRYKVPSSL-FLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHIT  180 (430)
Q Consensus       123 ~l~~l~l~~~~~~~~~lp~~~-~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~  180 (430)
                      +++.+++..+  .-..+|... ..+++|++|++++|.+..  +..|.++++|+.|+++++.
T Consensus         2 ~L~~L~l~~n--~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNN--KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSS--TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCC--CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            4566666543  234567644 468999999999998764  5678899999999998875

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=96.19  E-value=0.0018  Score=40.96  Aligned_cols=36  Identities=28%  Similarity=0.406  Sum_probs=21.8

Q ss_pred             CceeEEEEeeeeecCCCC-CCCCCCcceEEeeeEEec
Q 014150          147 QNLIHLELFNCLLKPPST-FKGFRNLKSLDLQHITLS  182 (430)
Q Consensus       147 ~~L~~L~L~~~~~~~~~~-~~~~~~L~~L~L~~~~~~  182 (430)
                      ++|++|+++++.+..-+. +.+|++|+.|+++++.++
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence            356777777776665223 667777777777776654

...

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=95.78  E-value=4.8e-05  Score=70.56  Aligned_cols=177  Identities=19%  Similarity=0.132  Sum_probs=82.5

Q ss_pred             cccCCCcccccCceeEEEEeeeeecC-CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEEEe-
Q 014150          136 RYKVPSSLFLCQNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNID-  213 (430)
Q Consensus       136 ~~~lp~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~i~-  213 (430)
                      ..++|..++.|..|..|+.+++.+.. |.+++++..|..|.+.++.+..-. +..+. ..+|++|+.... .++.+.-. 
T Consensus       126 ~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~-~~~i~-m~~L~~ld~~~N-~L~tlP~~l  202 (565)
T KOG0472|consen  126 LKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALP-ENHIA-MKRLKHLDCNSN-LLETLPPEL  202 (565)
T ss_pred             eeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCC-HHHHH-HHHHHhcccchh-hhhcCChhh
Confidence            34566666666666666666665544 455556666666666666543221 11122 444555543321 11111000 


Q ss_pred             --CCCcceEEEeccccc--eeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeehhhccc
Q 014150          214 --APNLQFFDIGGVFDD--VTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGN  289 (430)
Q Consensus       214 --~p~L~~L~l~~~~~~--~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  289 (430)
                        -.+|..|++....-.  -.|.+|..|.++.++.......           -.+.+..++++..|++..+.++.+..+.
T Consensus       203 g~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~l-----------pae~~~~L~~l~vLDLRdNklke~Pde~  271 (565)
T KOG0472|consen  203 GGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEML-----------PAEHLKHLNSLLVLDLRDNKLKEVPDEI  271 (565)
T ss_pred             cchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhh-----------HHHHhcccccceeeeccccccccCchHH
Confidence              123333333321110  1355666666665543321100           0233456677777777766665433322


Q ss_pred             CCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecC
Q 014150          290 VPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARP  338 (430)
Q Consensus       290 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~  338 (430)
                      .      .+.+|..|+++..     ++.+++.-|.+. .|+.|.++|++
T Consensus       272 c------lLrsL~rLDlSNN-----~is~Lp~sLgnl-hL~~L~leGNP  308 (565)
T KOG0472|consen  272 C------LLRSLERLDLSNN-----DISSLPYSLGNL-HLKFLALEGNP  308 (565)
T ss_pred             H------HhhhhhhhcccCC-----ccccCCcccccc-eeeehhhcCCc
Confidence            2      2345566665322     222344445555 55555555554

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.59  E-value=0.0075  Score=54.24  Aligned_cols=90  Identities=16%  Similarity=0.139  Sum_probs=67.2

Q ss_pred             cCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCC
Q 014150          233 NTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFND  312 (430)
Q Consensus       233 ~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  312 (430)
                      .+..+.++++.+....         ++..+..++.++|+|+.|.|+.+.+..     ....+|....||+.|.++..+..
T Consensus        69 ~~~~v~elDL~~N~iS---------dWseI~~ile~lP~l~~LNls~N~L~s-----~I~~lp~p~~nl~~lVLNgT~L~  134 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLIS---------DWSEIGAILEQLPALTTLNLSCNSLSS-----DIKSLPLPLKNLRVLVLNGTGLS  134 (418)
T ss_pred             Hhhhhhhhhcccchhc---------cHHHHHHHHhcCccceEeeccCCcCCC-----ccccCcccccceEEEEEcCCCCC
Confidence            4677888888765432         567778899999999999999887642     22234435679999999766544


Q ss_pred             hhhHHHHHHHHhcCCCccEEEEeecCC
Q 014150          313 LEENLAALCLLRSSPNLQELEMLARPE  339 (430)
Q Consensus       313 ~~~~~~l~~ll~~~p~L~~L~l~~~~~  339 (430)
                      +   ..+..++...|.++.|+++.+..
T Consensus       135 w---~~~~s~l~~lP~vtelHmS~N~~  158 (418)
T KOG2982|consen  135 W---TQSTSSLDDLPKVTELHMSDNSL  158 (418)
T ss_pred             h---hhhhhhhhcchhhhhhhhccchh
Confidence            3   35778899999999999988754

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=95.59  E-value=0.0043  Score=63.88  Aligned_cols=46  Identities=35%  Similarity=0.412  Sum_probs=37.5

Q ss_pred             ccCCCcccccCceeEEEEeeeeecC-CCCCCCCCCcceEEeeeEEec
Q 014150          137 YKVPSSLFLCQNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITLS  182 (430)
Q Consensus       137 ~~lp~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~~L~~L~L~~~~~~  182 (430)
                      ...|....+..+|+.|.|.++.+.. |.++..+.+|..|+++.+.+.
T Consensus        81 ~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~  127 (1081)
T KOG0618|consen   81 RSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFG  127 (1081)
T ss_pred             hhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhccC
Confidence            4567777777899999999987765 667778999999999998865

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=95.54  E-value=0.028  Score=59.82  Aligned_cols=122  Identities=16%  Similarity=0.223  Sum_probs=60.0

Q ss_pred             CceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEe-chhhHHHHhhcCccccceEeeccCCceEEE--E-eCCCcceEEE
Q 014150          147 QNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITL-SQDVFENLISSSPTLERLTLMNFDGFTHLN--I-DAPNLQFFDI  222 (430)
Q Consensus       147 ~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~-~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~--i-~~p~L~~L~l  222 (430)
                      ...+...+-++.+.....-..+|.|++|-+..+.. -...-..++...|.|+.|++++|..+..+.  | .--+|++|++
T Consensus       523 ~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L  602 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDL  602 (889)
T ss_pred             hheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccc
Confidence            45566666655544323333566777777766542 111112335556777777777665544331  1 1235555555


Q ss_pred             ecccc---ceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEee
Q 014150          223 GGVFD---DVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQS  279 (430)
Q Consensus       223 ~~~~~---~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~  279 (430)
                      ++...   +..+.++.+|.+|++........           +......+++|++|.+-.
T Consensus       603 ~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~-----------~~~i~~~L~~Lr~L~l~~  651 (889)
T KOG4658|consen  603 SDTGISHLPSGLGNLKKLIYLNLEVTGRLES-----------IPGILLELQSLRVLRLPR  651 (889)
T ss_pred             cCCCccccchHHHHHHhhheecccccccccc-----------ccchhhhcccccEEEeec
Confidence            54321   12344555666666654432211           122234466666666643

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=95.16  E-value=0.01  Score=53.95  Aligned_cols=37  Identities=27%  Similarity=0.509  Sum_probs=34.8

Q ss_pred             CcccCCCc----HHHHHHHHcCCCchhhhhhhhhhhhhHhh
Q 014150           17 LDRLSSLP----AHVIDQILSQLPIRDAVRTSVLSKKWRYK   53 (430)
Q Consensus        17 ~d~is~LP----delL~~Ils~L~~~d~~r~s~vskrWr~l   53 (430)
                      .|-++.||    |++-..||++|+..+++.+-.|||+|+++
T Consensus        72 rDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~  112 (499)
T KOG0281|consen   72 RDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRV  112 (499)
T ss_pred             HHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHH
Confidence            58899999    99999999999999999999999999974

>PLN03150 hypothetical protein; Provisional

Probab=94.97  E-value=0.017  Score=59.55  Aligned_cols=77  Identities=21%  Similarity=0.224  Sum_probs=53.2

Q ss_pred             ceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEE---EeCCCcceEEE
Q 014150          148 NLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLN---IDAPNLQFFDI  222 (430)
Q Consensus       148 ~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~---i~~p~L~~L~l  222 (430)
                      .++.|+|+++.+..  |..+..+++|+.|+|.++.+.+. +...+..++.|+.|+|+++.-...+.   -..++|+.|++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L  497 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL  497 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence            37788888887653  45567888999999988877644 45556788889999988764322111   13467888887


Q ss_pred             ecc
Q 014150          223 GGV  225 (430)
Q Consensus       223 ~~~  225 (430)
                      .++
T Consensus       498 s~N  500 (623)
T PLN03150        498 NGN  500 (623)
T ss_pred             cCC
Confidence            764

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=94.80  E-value=0.0054  Score=61.61  Aligned_cols=101  Identities=18%  Similarity=0.140  Sum_probs=55.7

Q ss_pred             CCCcceEEeeeEEechhhHHHHhhcCccccceEeeccC--CceEEEEeCCCcceEEEeccccc--eeeccCCCceEEEEE
Q 014150          168 FRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFD--GFTHLNIDAPNLQFFDIGGVFDD--VTFENTFHLALVSIG  243 (430)
Q Consensus       168 ~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~--~~~~l~i~~p~L~~L~l~~~~~~--~~~~~~p~L~~l~i~  243 (430)
                      +|.|+.|+|+++.+..-+   .+..||.|++|+|++..  .+..+...+-.|..|.+.++.-.  .-+.++.+|..|+++
T Consensus       186 l~ale~LnLshNk~~~v~---~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~gie~LksL~~LDls  262 (1096)
T KOG1859|consen  186 LPALESLNLSHNKFTKVD---NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLRGIENLKSLYGLDLS  262 (1096)
T ss_pred             HHHhhhhccchhhhhhhH---HHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhhhHHhhhhhhccchh
Confidence            467777888777765432   35568888888887532  22223333334666666664321  123467777777776


Q ss_pred             EEeeccccccCCCCCcchHHHHhccCCCccEEEEeeee
Q 014150          244 LYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYF  281 (430)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~  281 (430)
                      ++...+-.          =...+..+..|+.|+|.+|.
T Consensus       263 yNll~~hs----------eL~pLwsLs~L~~L~LeGNP  290 (1096)
T KOG1859|consen  263 YNLLSEHS----------ELEPLWSLSSLIVLWLEGNP  290 (1096)
T ss_pred             Hhhhhcch----------hhhHHHHHHHHHHHhhcCCc
Confidence            54322110          01234555566666666554

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=94.71  E-value=0.025  Score=52.93  Aligned_cols=59  Identities=25%  Similarity=0.313  Sum_probs=43.2

Q ss_pred             CCceEEEEEecCCCcccCCCccc-ccCceeEEEEeeeeec--CCCCCCCCCCcceEEeee-EEec
Q 014150          122 SCVKEFILEIWKGQRYKVPSSLF-LCQNLIHLELFNCLLK--PPSTFKGFRNLKSLDLQH-ITLS  182 (430)
Q Consensus       122 ~~l~~l~l~~~~~~~~~lp~~~~-~~~~L~~L~L~~~~~~--~~~~~~~~~~L~~L~L~~-~~~~  182 (430)
                      .+..+++++-...  -.+|...+ ..++|+.|+|+.|.+.  .|.+|.++++|.+|.+.+ +.|.
T Consensus        67 ~~tveirLdqN~I--~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~  129 (498)
T KOG4237|consen   67 PETVEIRLDQNQI--SSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT  129 (498)
T ss_pred             CcceEEEeccCCc--ccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence            4555666654322  35777655 5699999999999765  477899999999999988 5565

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=94.53  E-value=0.062  Score=45.81  Aligned_cols=58  Identities=28%  Similarity=0.316  Sum_probs=36.9

Q ss_pred             cCceeEEEEeeeeecC-CCCCC-CCCCcceEEeeeEEech-hhHHHHhhcCccccceEeecc
Q 014150          146 CQNLIHLELFNCLLKP-PSTFK-GFRNLKSLDLQHITLSQ-DVFENLISSSPTLERLTLMNF  204 (430)
Q Consensus       146 ~~~L~~L~L~~~~~~~-~~~~~-~~~~L~~L~L~~~~~~~-~~l~~l~s~cp~Le~L~l~~c  204 (430)
                      .+.|.+|.|++|++.. .+.+. .+|+|.+|.|.++.+.. .++.. +.+||+|+.|++-+-
T Consensus        63 l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~Ltll~N  123 (233)
T KOG1644|consen   63 LPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP-LASCPKLEYLTLLGN  123 (233)
T ss_pred             ccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch-hccCCccceeeecCC
Confidence            4677888888777654 22222 46778888888777532 22333 456788888877654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=94.50  E-value=0.026  Score=35.63  Aligned_cols=35  Identities=34%  Similarity=0.502  Sum_probs=27.9

Q ss_pred             CCcceEEeeeEEechhhHHHHhhcCccccceEeeccC
Q 014150          169 RNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFD  205 (430)
Q Consensus       169 ~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~  205 (430)
                      ++|++|+|.++.+++  +...++.|++|+.|.++++.
T Consensus         1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~   35 (44)
T PF12799_consen    1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNP   35 (44)
T ss_dssp             TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSC
T ss_pred             CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCC
Confidence            589999999999873  55557899999999999874

...

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=94.31  E-value=0.03  Score=52.92  Aligned_cols=38  Identities=21%  Similarity=0.353  Sum_probs=33.6

Q ss_pred             ccCCCcHHHHHHHHcCCC-chhhhhhhhhhhhhHhhcCc
Q 014150           19 RLSSLPAHVIDQILSQLP-IRDAVRTSVLSKKWRYKWAT   56 (430)
Q Consensus        19 ~is~LPdelL~~Ils~L~-~~d~~r~s~vskrWr~lw~~   56 (430)
                      ..++||+|+|..|..+|+ .-|++|.+.||+.||.....
T Consensus         3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~   41 (373)
T PLN03215          3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG   41 (373)
T ss_pred             ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence            367899999999999997 57999999999999986543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=93.98  E-value=0.084  Score=45.02  Aligned_cols=78  Identities=19%  Similarity=0.268  Sum_probs=52.8

Q ss_pred             CceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccC--CceEE--EEeCCCcceEEE
Q 014150          147 QNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFD--GFTHL--NIDAPNLQFFDI  222 (430)
Q Consensus       147 ~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~--~~~~l--~i~~p~L~~L~l  222 (430)
                      .....++|+.|.+.....|..+++|.+|.|..+.|+.-+ ..+....|+|..|.+.+..  .+..+  -..+|.|++|.+
T Consensus        42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~-p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl  120 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRID-PDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL  120 (233)
T ss_pred             cccceecccccchhhcccCCCccccceEEecCCcceeec-cchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence            466788999988877677889999999999999876321 2233346888888888632  11111  135677777777


Q ss_pred             ecc
Q 014150          223 GGV  225 (430)
Q Consensus       223 ~~~  225 (430)
                      .|.
T Consensus       121 l~N  123 (233)
T KOG1644|consen  121 LGN  123 (233)
T ss_pred             cCC
Confidence            663

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=92.89  E-value=0.066  Score=48.52  Aligned_cols=37  Identities=27%  Similarity=0.396  Sum_probs=31.6

Q ss_pred             CCcccCCCcHHHHHHHHc-----CCCchhhhhhhhhhhhhHh
Q 014150           16 ELDRLSSLPAHVIDQILS-----QLPIRDAVRTSVLSKKWRY   52 (430)
Q Consensus        16 ~~d~is~LPdelL~~Ils-----~L~~~d~~r~s~vskrWr~   52 (430)
                      ..+.|+.||||||..||.     -++.++..++|.|||.|..
T Consensus       103 ~~~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~  144 (366)
T KOG2997|consen  103 ELISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYK  144 (366)
T ss_pred             hhhhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHH
Confidence            345678999999999987     4567999999999999975

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=92.13  E-value=0.14  Score=45.69  Aligned_cols=74  Identities=15%  Similarity=0.027  Sum_probs=42.6

Q ss_pred             hccCCCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHH--hcCCCccEEEEeecCCC
Q 014150          266 FVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLL--RSSPNLQELEMLARPEE  340 (430)
Q Consensus       266 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll--~~~p~L~~L~l~~~~~~  340 (430)
                      +..+.+|+.|+|..+++.-.........++ ..++|+.|.++-|..+.....++...+  ...|+|+.|....+...
T Consensus       210 l~y~~~LevLDlqDNtft~~gS~~La~al~-~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~  285 (388)
T COG5238         210 LFYSHSLEVLDLQDNTFTLEGSRYLADALC-EWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR  285 (388)
T ss_pred             HHHhCcceeeeccccchhhhhHHHHHHHhc-ccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence            456789999999988754221111111122 455789999987765543322222222  23588888877766543

>PRK15386 type III secretion protein GogB; Provisional

Probab=91.91  E-value=0.32  Score=46.83  Aligned_cols=10  Identities=30%  Similarity=0.720  Sum_probs=5.2

Q ss_pred             ceeEEEEeee
Q 014150          148 NLIHLELFNC  157 (430)
Q Consensus       148 ~L~~L~L~~~  157 (430)
                      +|++|.+++|
T Consensus        73 sLtsL~Lsnc   82 (426)
T PRK15386         73 ELTEITIENC   82 (426)
T ss_pred             CCcEEEccCC
Confidence            3555555543

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.74  E-value=0.024  Score=48.21  Aligned_cols=72  Identities=18%  Similarity=0.230  Sum_probs=49.8

Q ss_pred             cCCCcccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEE-echhhHHHHhhcCccccceEeeccCCceE
Q 014150          138 KVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHIT-LSQDVFENLISSSPTLERLTLMNFDGFTH  209 (430)
Q Consensus       138 ~lp~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~-~~~~~l~~l~s~cp~Le~L~l~~c~~~~~  209 (430)
                      .+|..-..--.++.++-+++.+..  -..+.+++.++.|.+..|. +++..++.+-.-.|+|+.|.|+.|+.++.
T Consensus        92 ~lp~~~~~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~  166 (221)
T KOG3864|consen   92 SLPGPNADNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD  166 (221)
T ss_pred             cCCCCCCCcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeech
Confidence            455433333456667666655433  1234578888889998887 67778888777889999999999886653

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.74  E-value=0.012  Score=52.47  Aligned_cols=12  Identities=50%  Similarity=0.894  Sum_probs=6.9

Q ss_pred             HHhcCCCccEEE
Q 014150          322 LLRSSPNLQELE  333 (430)
Q Consensus       322 ll~~~p~L~~L~  333 (430)
                      .|+.+|+|++|+
T Consensus       112 VLR~LPnLkKLD  123 (388)
T KOG2123|consen  112 VLRVLPNLKKLD  123 (388)
T ss_pred             HHHHcccchhcc
Confidence            455566666654

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=91.72  E-value=0.05  Score=48.17  Aligned_cols=59  Identities=27%  Similarity=0.276  Sum_probs=42.4

Q ss_pred             cccCceeEEEEeeeeecCCCCCCCCCCcceEEeeeEE--echhhHHHHhhcCccccceEeec
Q 014150          144 FLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHIT--LSQDVFENLISSSPTLERLTLMN  203 (430)
Q Consensus       144 ~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~--~~~~~l~~l~s~cp~Le~L~l~~  203 (430)
                      -....|+.|++.++.+.....|-.+|+|++|.++.+.  +.. .+.-++..||+|++|.++.
T Consensus        40 d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~-~l~vl~e~~P~l~~l~ls~  100 (260)
T KOG2739|consen   40 DEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSG-GLEVLAEKAPNLKVLNLSG  100 (260)
T ss_pred             ccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccc-cceehhhhCCceeEEeecC
Confidence            3456677777777777776667778888999988884  333 3555566778888888875

>PLN03150 hypothetical protein; Provisional

Probab=91.11  E-value=0.19  Score=51.99  Aligned_cols=68  Identities=16%  Similarity=0.236  Sum_probs=57.0

Q ss_pred             ccCCCcccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccC
Q 014150          137 YKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFD  205 (430)
Q Consensus       137 ~~lp~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~  205 (430)
                      ..+|..+..+++|+.|+|++|.+..  |..+..+++|+.|+|+++.+.+. +...+..+++|+.|.|.++.
T Consensus       432 g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~-iP~~l~~L~~L~~L~Ls~N~  501 (623)
T PLN03150        432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS-IPESLGQLTSLRILNLNGNS  501 (623)
T ss_pred             ccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCC-CchHHhcCCCCCEEECcCCc
Confidence            3578788889999999999998864  45678999999999999998755 45567889999999999864

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=89.61  E-value=0.17  Score=49.25  Aligned_cols=76  Identities=28%  Similarity=0.284  Sum_probs=45.8

Q ss_pred             CceeEEEEeeeeecCCCCCC-CC-CCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEE---EeCCCcceEE
Q 014150          147 QNLIHLELFNCLLKPPSTFK-GF-RNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLN---IDAPNLQFFD  221 (430)
Q Consensus       147 ~~L~~L~L~~~~~~~~~~~~-~~-~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~---i~~p~L~~L~  221 (430)
                      +.+..|.+.++.+..-.... .+ ++|+.|++..+.+..-  ..-+..+|.|+.|.+.+++-. .+.   ...++|+.|.
T Consensus       116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l--~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~  192 (394)
T COG4886         116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESL--PSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLD  192 (394)
T ss_pred             cceeEEecCCcccccCccccccchhhcccccccccchhhh--hhhhhccccccccccCCchhh-hhhhhhhhhhhhhhee
Confidence            56777777777665532222 33 2788888877765432  123556788888888776422 221   1567777777


Q ss_pred             Eecc
Q 014150          222 IGGV  225 (430)
Q Consensus       222 l~~~  225 (430)
                      +.+.
T Consensus       193 ls~N  196 (394)
T COG4886         193 LSGN  196 (394)
T ss_pred             ccCC
Confidence            7663

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=89.47  E-value=0.21  Score=27.32  Aligned_cols=22  Identities=32%  Similarity=0.514  Sum_probs=14.5

Q ss_pred             CCCcceEEeeeEE-echhhHHHH
Q 014150          168 FRNLKSLDLQHIT-LSQDVFENL  189 (430)
Q Consensus       168 ~~~L~~L~L~~~~-~~~~~l~~l  189 (430)
                      ||+|+.|+|.+|. ++|.++..+
T Consensus         1 c~~L~~L~l~~C~~itD~gl~~l   23 (26)
T smart00367        1 CPNLRELDLSGCTNITDEGLQAL   23 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHHHHHH
Confidence            4667777777775 666666554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=89.18  E-value=0.22  Score=48.45  Aligned_cols=162  Identities=20%  Similarity=0.246  Sum_probs=97.5

Q ss_pred             CceEEEEEecCCCcccCCCcccccC-ceeEEEEeeeeecCC-CCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceE
Q 014150          123 CVKEFILEIWKGQRYKVPSSLFLCQ-NLIHLELFNCLLKPP-STFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLT  200 (430)
Q Consensus       123 ~l~~l~l~~~~~~~~~lp~~~~~~~-~L~~L~L~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~  200 (430)
                      .+..+.+..  ....+++......+ +|+.|+++++.+..- .....+++|+.|++..+.+.+  +.......+.|+.|.
T Consensus       117 ~l~~L~l~~--n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~--l~~~~~~~~~L~~L~  192 (394)
T COG4886         117 NLTSLDLDN--NNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSD--LPKLLSNLSNLNNLD  192 (394)
T ss_pred             ceeEEecCC--cccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhh--hhhhhhhhhhhhhee
Confidence            344444432  23345776666664 899999999988763 456789999999999998753  233333688899999


Q ss_pred             eeccCCceEEEE--eCCC-cceEEEecc-ccc--eeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccE
Q 014150          201 LMNFDGFTHLNI--DAPN-LQFFDIGGV-FDD--VTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRR  274 (430)
Q Consensus       201 l~~c~~~~~l~i--~~p~-L~~L~l~~~-~~~--~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~  274 (430)
                      +.+.. +..+.-  ..++ |+.|.+.+. ...  ..+..+.++..+.+......            .+...+..+++++.
T Consensus       193 ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~------------~~~~~~~~l~~l~~  259 (394)
T COG4886         193 LSGNK-ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE------------DLPESIGNLSNLET  259 (394)
T ss_pred             ccCCc-cccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceee------------eccchhccccccce
Confidence            99753 233332  2344 777777665 211  12334455555543222111            11234677788888


Q ss_pred             EEEeeeeeehhhcccCCCCCCccccccceeEEEE
Q 014150          275 LEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRI  308 (430)
Q Consensus       275 L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  308 (430)
                      |.++.+.+..++.      +. ...+++.|+++.
T Consensus       260 L~~s~n~i~~i~~------~~-~~~~l~~L~~s~  286 (394)
T COG4886         260 LDLSNNQISSISS------LG-SLTNLRELDLSG  286 (394)
T ss_pred             ecccccccccccc------cc-ccCccCEEeccC
Confidence            8888776653322      11 355777777743

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=88.45  E-value=0.3  Score=26.00  Aligned_cols=22  Identities=27%  Similarity=0.365  Sum_probs=14.7

Q ss_pred             CCCcceEEeeeEEechhhHHHH
Q 014150          168 FRNLKSLDLQHITLSQDVFENL  189 (430)
Q Consensus       168 ~~~L~~L~L~~~~~~~~~l~~l  189 (430)
                      +++|++|+|.++.++++.+..+
T Consensus         1 ~~~L~~L~l~~n~i~~~g~~~l   22 (24)
T PF13516_consen    1 NPNLETLDLSNNQITDEGASAL   22 (24)
T ss_dssp             -TT-SEEE-TSSBEHHHHHHHH
T ss_pred             CCCCCEEEccCCcCCHHHHHHh
Confidence            4788888998888887766554

...

>PF13013 F-box-like_2: F-box-like domain

Probab=86.93  E-value=0.89  Score=34.94  Aligned_cols=30  Identities=17%  Similarity=0.100  Sum_probs=26.3

Q ss_pred             ccCCCcHHHHHHHHcCCCchhhhhhhhhhh
Q 014150           19 RLSSLPAHVIDQILSQLPIRDAVRTSVLSK   48 (430)
Q Consensus        19 ~is~LPdelL~~Ils~L~~~d~~r~s~vsk   48 (430)
                      .+.+||+||+..|+.+-...+...+...|+
T Consensus        21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~   50 (109)
T PF13013_consen   21 TLLDLPWELLQLIFDYCNDPILLALSRTCR   50 (109)
T ss_pred             chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence            477899999999999999999888776665

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=86.58  E-value=0.16  Score=45.98  Aligned_cols=35  Identities=26%  Similarity=0.285  Sum_probs=16.3

Q ss_pred             cCceeEEEEeeeeecCCCCCC-CCCCcceEEeeeEE
Q 014150          146 CQNLIHLELFNCLLKPPSTFK-GFRNLKSLDLQHIT  180 (430)
Q Consensus       146 ~~~L~~L~L~~~~~~~~~~~~-~~~~L~~L~L~~~~  180 (430)
                      .++|+.|+|++|.+..-.++. .+-|.++|.|..+.
T Consensus       328 L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~  363 (490)
T KOG1259|consen  328 LPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNK  363 (490)
T ss_pred             cccceEeecccchhHhhhhhHhhhcCEeeeehhhhh
Confidence            455556666655443322221 34445555554443

>PRK15386 type III secretion protein GogB; Provisional

Probab=86.36  E-value=1  Score=43.43  Aligned_cols=54  Identities=15%  Similarity=0.153  Sum_probs=31.5

Q ss_pred             CCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEE-EeCCCcceEEEecc
Q 014150          167 GFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLN-IDAPNLQFFDIGGV  225 (430)
Q Consensus       167 ~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~-i~~p~L~~L~l~~~  225 (430)
                      .|++++.|++++|.+..  +..   --++|++|.+.+|..+..+. .-.++|++|.+.++
T Consensus        50 ~~~~l~~L~Is~c~L~s--LP~---LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~C  104 (426)
T PRK15386         50 EARASGRLYIKDCDIES--LPV---LPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHC  104 (426)
T ss_pred             HhcCCCEEEeCCCCCcc--cCC---CCCCCcEEEccCCCCcccCCchhhhhhhheEccCc
Confidence            36778888887774321  121   11247888888776654332 12357777777654

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=86.28  E-value=0.26  Score=43.79  Aligned_cols=93  Identities=15%  Similarity=0.018  Sum_probs=53.5

Q ss_pred             eccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEee
Q 014150          231 FENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINF  310 (430)
Q Consensus       231 ~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  310 (430)
                      +..+|+|++|.++.....         ....+..+...+|+|++|.++++.+..++.-.   .++ .+.||+.|.+..+-
T Consensus        61 ~P~Lp~LkkL~lsdn~~~---------~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~---pl~-~l~nL~~Ldl~n~~  127 (260)
T KOG2739|consen   61 FPKLPKLKKLELSDNYRR---------VSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR---PLK-ELENLKSLDLFNCS  127 (260)
T ss_pred             CCCcchhhhhcccCCccc---------ccccceehhhhCCceeEEeecCCccccccccc---hhh-hhcchhhhhcccCC
Confidence            345667777777654221         11222233566799999999999887533221   122 56788888885442


Q ss_pred             CChhhHHHHHHHHhcCCCccEEEEeec
Q 014150          311 NDLEENLAALCLLRSSPNLQELEMLAR  337 (430)
Q Consensus       311 ~~~~~~~~l~~ll~~~p~L~~L~l~~~  337 (430)
                      ... ...-=..+++-.|+|+.|+-...
T Consensus       128 ~~~-l~dyre~vf~ll~~L~~LD~~dv  153 (260)
T KOG2739|consen  128 VTN-LDDYREKVFLLLPSLKYLDGCDV  153 (260)
T ss_pred             ccc-cccHHHHHHHHhhhhcccccccc
Confidence            211 11123346677888888875443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.18  E-value=0.11  Score=46.51  Aligned_cols=57  Identities=19%  Similarity=0.111  Sum_probs=27.4

Q ss_pred             CceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeec
Q 014150          147 QNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMN  203 (430)
Q Consensus       147 ~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~  203 (430)
                      +.|+.|.|+-|.+..-..+..|.+|++|+|..+.|.+-+-..-+.+.|+|+.|+|..
T Consensus        41 p~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E   97 (388)
T KOG2123|consen   41 PLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE   97 (388)
T ss_pred             ccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence            445555555544444344445555555555555544322222344455555555553

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=85.87  E-value=0.33  Score=51.89  Aligned_cols=116  Identities=22%  Similarity=0.220  Sum_probs=67.6

Q ss_pred             HHHhccCCCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCCCCc
Q 014150          263 LRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETG  342 (430)
Q Consensus       263 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~  342 (430)
                      ..++..+|.|+.|+|+.+..    ....|..+. .+-+|++|+++...     +..++.-++++.+|.+|++........
T Consensus       564 ~~ff~~m~~LrVLDLs~~~~----l~~LP~~I~-~Li~LryL~L~~t~-----I~~LP~~l~~Lk~L~~Lnl~~~~~l~~  633 (889)
T KOG4658|consen  564 GEFFRSLPLLRVLDLSGNSS----LSKLPSSIG-ELVHLRYLDLSDTG-----ISHLPSGLGNLKKLIYLNLEVTGRLES  633 (889)
T ss_pred             HHHHhhCcceEEEECCCCCc----cCcCChHHh-hhhhhhcccccCCC-----ccccchHHHHHHhhheecccccccccc
Confidence            35678889999999986432    122222222 45678877775432     235777788888899998887654310


Q ss_pred             ccccccceecccccccccCceEEEEEeeecCccHHHHHHHHHccCCCcceEEEeecC
Q 014150          343 IGVLTNFWEVDHWTSLFSQLRMVKIVGISGIRSELEFIKFVLSNSPVLETMTIKPAS  399 (430)
Q Consensus       343 ~~~~~~~w~~~~~~~~~~~L~~v~i~~~~~~~~e~~~~~~il~~~~~L~~l~i~~~~  399 (430)
                      .         ....+.+.+|+++.+..-.- ......+. -+.+...|+.++++...
T Consensus       634 ~---------~~i~~~L~~Lr~L~l~~s~~-~~~~~~l~-el~~Le~L~~ls~~~~s  679 (889)
T KOG4658|consen  634 I---------PGILLELQSLRVLRLPRSAL-SNDKLLLK-ELENLEHLENLSITISS  679 (889)
T ss_pred             c---------cchhhhcccccEEEeecccc-ccchhhHH-hhhcccchhhheeecch
Confidence            0         11233577888888775431 11112222 22677777777775443

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=85.45  E-value=0.35  Score=48.70  Aligned_cols=39  Identities=31%  Similarity=0.378  Sum_probs=36.4

Q ss_pred             CCCcccCCCcHHHHHHHHcCCCchhhhhhhhhhhhhHhh
Q 014150           15 TELDRLSSLPAHVIDQILSQLPIRDAVRTSVLSKKWRYK   53 (430)
Q Consensus        15 ~~~d~is~LPdelL~~Ils~L~~~d~~r~s~vskrWr~l   53 (430)
                      ...|.++.||-|+-..||++|+.++.+.+++||+.|+.+
T Consensus       103 ~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~  141 (537)
T KOG0274|consen  103 GQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL  141 (537)
T ss_pred             cccchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence            457999999999999999999999999999999999874

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=84.75  E-value=0.066  Score=42.76  Aligned_cols=57  Identities=25%  Similarity=0.317  Sum_probs=31.4

Q ss_pred             CceeEEEEeeeeecC-CCCCC-CCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccC
Q 014150          147 QNLIHLELFNCLLKP-PSTFK-GFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFD  205 (430)
Q Consensus       147 ~~L~~L~L~~~~~~~-~~~~~-~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~  205 (430)
                      ..|...+|++|.+.+ |..|. .||.+++|+|.++.+++-..+  ++..|.|+.|.++..+
T Consensus        53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE--~Aam~aLr~lNl~~N~  111 (177)
T KOG4579|consen   53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE--LAAMPALRSLNLRFNP  111 (177)
T ss_pred             ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH--HhhhHHhhhcccccCc
Confidence            455556666665554 33333 455666666666665543222  5556666666666543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=83.91  E-value=2.7  Score=37.88  Aligned_cols=186  Identities=14%  Similarity=0.118  Sum_probs=90.8

Q ss_pred             cCceeEEEEeeeeecCCC------CCCCCCCcceEEeeeEEec---hh------hHHHHhhcCccccceEeeccCC-ce-
Q 014150          146 CQNLIHLELFNCLLKPPS------TFKGFRNLKSLDLQHITLS---QD------VFENLISSSPTLERLTLMNFDG-FT-  208 (430)
Q Consensus       146 ~~~L~~L~L~~~~~~~~~------~~~~~~~L~~L~L~~~~~~---~~------~l~~l~s~cp~Le~L~l~~c~~-~~-  208 (430)
                      ..+++.++|+||.+....      ...+-.+|+.-+++.....   ++      .+...+..||+|+..++++.-- .+ 
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            578899999999775421      1224466666666654321   21      2344566899999999986421 11 


Q ss_pred             -----EEEEeCCCcceEEEecc-ccce----------------eeccCCCceEEEEEEEeeccccccCCCCCcchHHHHh
Q 014150          209 -----HLNIDAPNLQFFDIGGV-FDDV----------------TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFF  266 (430)
Q Consensus       209 -----~l~i~~p~L~~L~l~~~-~~~~----------------~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l  266 (430)
                           .+.-.+..|++|.+..+ .+++                -..+.|.|+.+.+......       .+...-+...+
T Consensus       109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-------ngs~~~~a~~l  181 (388)
T COG5238         109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-------NGSKELSAALL  181 (388)
T ss_pred             chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-------cCcHHHHHHHH
Confidence                 11224567777777632 1110                1135566666655432211       11122223344


Q ss_pred             ccCCCccEEEEeeeeeehhhcccC-CCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCC
Q 014150          267 VHLPHIRRLEIQSYFLKYLAIGNV-PSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPE  339 (430)
Q Consensus       267 ~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~  339 (430)
                      ..-.+|+.+.+..+.+..-..... ...+ .-+.+|+.|++.-.+.+...-..+...+..-|.|+.|.+..|-.
T Consensus       182 ~sh~~lk~vki~qNgIrpegv~~L~~~gl-~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCll  254 (388)
T COG5238         182 ESHENLKEVKIQQNGIRPEGVTMLAFLGL-FYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLL  254 (388)
T ss_pred             HhhcCceeEEeeecCcCcchhHHHHHHHH-HHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhh
Confidence            444567777666555432100000 0000 12456666666433222221122333444455666666666543

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.01  E-value=0.075  Score=45.29  Aligned_cols=66  Identities=20%  Similarity=0.222  Sum_probs=47.4

Q ss_pred             ccccCceeEEEEeeee-ecCC--CCC-CCCCCcceEEeeeEE-echhhHHHHhhcCccccceEeeccCCceE
Q 014150          143 LFLCQNLIHLELFNCL-LKPP--STF-KGFRNLKSLDLQHIT-LSQDVFENLISSSPTLERLTLMNFDGFTH  209 (430)
Q Consensus       143 ~~~~~~L~~L~L~~~~-~~~~--~~~-~~~~~L~~L~L~~~~-~~~~~l~~l~s~cp~Le~L~l~~c~~~~~  209 (430)
                      +..+++++.|.+.+|. +.+.  ..+ ...|+|+.|+|++|. |++..+.. +...++|+.|.|.+.+.+..
T Consensus       121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~-L~~lknLr~L~l~~l~~v~~  191 (221)
T KOG3864|consen  121 LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLAC-LLKLKNLRRLHLYDLPYVAN  191 (221)
T ss_pred             HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHH-HHHhhhhHHHHhcCchhhhc
Confidence            4456888888888884 3331  111 257999999999887 88887765 44678999999988766543

>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members

Probab=82.15  E-value=2.6  Score=27.39  Aligned_cols=37  Identities=19%  Similarity=0.255  Sum_probs=30.8

Q ss_pred             cccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEe
Q 014150          299 VDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEML  335 (430)
Q Consensus       299 ~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~  335 (430)
                      .+|+.+.+........++.-+..++++++.|+++.|.
T Consensus        14 s~Lk~v~~~~f~g~~~e~~f~~yil~na~~Lk~m~i~   50 (51)
T PF08387_consen   14 SHLKFVEIKGFRGEENELEFAKYILENAPVLKKMTIS   50 (51)
T ss_pred             heeEEEEEEeeeCcHHHHHHHHHHHhhhhhhcEEEEE
Confidence            6899999965555566788889999999999999886

Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=80.52  E-value=1.1  Score=23.29  Aligned_cols=14  Identities=36%  Similarity=0.261  Sum_probs=8.5

Q ss_pred             ceeEEEEeeeeecC
Q 014150          148 NLIHLELFNCLLKP  161 (430)
Q Consensus       148 ~L~~L~L~~~~~~~  161 (430)
                      +|+.|+|++|.+..
T Consensus         1 ~L~~Ldls~n~l~~   14 (22)
T PF00560_consen    1 NLEYLDLSGNNLTS   14 (22)
T ss_dssp             TESEEEETSSEESE
T ss_pred             CccEEECCCCcCEe
Confidence            36667777665543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	430
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-08
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	5e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	7e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.7 bits (128), Expect = 8e-08
 Identities = 64/422 (15%), Positives = 131/422 (31%), Gaps = 100/422 (23%)

Query: 9   FPCKLETELDRLSSLPAHVIDQILSQLPIRDAVR---TSVLSKKWR-------------Y 52
           F CK   ++ + S L    ID I+              ++LSK+               Y
Sbjct: 33  FDCKDVQDMPK-SILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY 91

Query: 53  KWATVPHLVFDNHCVSTSSQDQTFI--KNKLVNIVDHVLLLHNGPILKFKLSHRD-LLGV 109
           K+   P           S   + +I  +++L N    V   +N   L+  L  R  LL +
Sbjct: 92  KFLMSP---IKTEQRQPSMMTRMYIEQRDRLYNDN-QVFAKYNVSRLQPYLKLRQALLEL 147

Query: 110 SDIDRWILY-MS---RSCV-----------KEFILEI-W--KGQRYKVPSSLFLCQNLIH 151
                 ++  +    ++ V            +   +I W          + L + Q L++
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207

Query: 152 LELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLN 211
               N   +   +      + S+        Q     L+ S P  E   L+        N
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSI--------QAELRRLLKSKP-YEN-CLLVLL-----N 252

Query: 212 I-DAPNLQFFDIG----------GVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSC 260
           + +A     F++            V D ++   T H++L          +   + P    
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL--------DHHSMTLTPDEVK 304

Query: 261 KLLRFFVH-----LPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEE 315
            LL  ++      LP     E+ +       +  +   +       +     +N + L  
Sbjct: 305 SLLLKYLDCRPQDLPR----EVLTTNP--RRLSIIAESIRDGLATWDNWK-HVNCDKLTT 357

Query: 316 NLAALCLLRSSPN-LQEL-EMLAR-PEETGI--GVLTNFW------EVDHWTSLFSQLRM 364
            + +  L    P   +++ + L+  P    I   +L+  W      +V    +   +  +
Sbjct: 358 IIES-SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL 416

Query: 365 VK 366
           V+
Sbjct: 417 VE 418

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 50.3 bits (120), Expect = 5e-07
 Identities = 39/228 (17%), Positives = 74/228 (32%), Gaps = 27/228 (11%)

Query: 20  LSSLPAHVIDQILSQLPIRDAVRTSVLSKKWRYKWATVPHLVFDNHCVSTSSQDQTFIKN 79
             SLP  ++  I S L + + ++ S + K+W  + A+   L         +      +  
Sbjct: 9   WDSLPDELLLGIFSCLCLPELLKVSGVCKRWY-RLASDESLWQTLDLTGKNL--HPDVTG 65

Query: 80  KLVNIVDHVLLLHNGPILKFKLSHRDLLGVSDIDRWILYMSRSCVKEFILEIWKGQRYKV 139
           +L++            + +    H     V  +D     +  S +               
Sbjct: 66  RLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGI------------ 113

Query: 140 PSSLFLCQNLIHLELFNCLLKPPS--TFKGFRNLKSLDLQHIT-LSQDVFENLISSSPTL 196
              L  C  L +L L    L  P   T     NL  L+L   +  S+   + L+SS   L
Sbjct: 114 ---LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 170

Query: 197 ERLTLMNFDGFTHLNIDA------PNLQFFDIGGVFDDVTFENTFHLA 238
           + L L     FT  ++          +   ++ G   ++   +   L 
Sbjct: 171 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV 218

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 56/333 (16%), Positives = 93/333 (27%), Gaps = 60/333 (18%)

Query: 18  DRLSSLPAHVIDQILSQLPI-RDAVRTSVLSKKWRYKWATVPHLVFDNHCVSTSSQDQTF 76
               S P  V++ + S + + +D    S++ K W          VF  +C + S      
Sbjct: 4   RIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPAT--- 60

Query: 77  IKNKLVNIVDHVLLLHNGPILKFKLSHRDLLGVSDIDRWILYMSRSCVKEFILEIWKGQR 136
           +  +   +   V L        F L      G      WI  MS S              
Sbjct: 61  VIRRFPKVR-SVELKGKPHFADFNLVPDGWGGYV--YPWIEAMSSS-------------- 103

Query: 137 YKVPSSLFLCQNLIHLELFNCLLKPPST---FKGFRNLKSLDLQHIT-LSQDVFENLISS 192
                       L  + L   ++         K F+N K L L      S D    + ++
Sbjct: 104 ---------YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAAT 154

Query: 193 SPTLERLTLMNF-------DGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLA-----LV 240
              L+ L L             +H      +L   +I  +  +V+F     L      L 
Sbjct: 155 CRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLK 214

Query: 241 SIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKY-LAIGNVPSRLPRPCV 299
           S+ L   V  ++         L       P +  L    Y  +    + +  S     C 
Sbjct: 215 SLKLNRAVPLEK---------LATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCK 265

Query: 300 DLNYLSIRINFNDLEENLAALCLLRSSPNLQEL 332
           +L  LS   +            +      L  L
Sbjct: 266 ELRCLSGFWDAVP----AYLPAVYSVCSRLTTL 294

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 26/94 (27%), Positives = 33/94 (35%), Gaps = 8/94 (8%)

Query: 139 VPSSLFLCQNLIHLELFNCLLK---PPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPT 195
           VP     C  L  L L +       P  T    R LK LDL     S ++ E+L + S +
Sbjct: 310 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS 369

Query: 196 LERLTLM--NFDGF---THLNIDAPNLQFFDIGG 224
           L  L L   NF G             LQ   +  
Sbjct: 370 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 403

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 29/211 (13%), Positives = 54/211 (25%), Gaps = 31/211 (14%)

Query: 146 CQNLIHLELFNCLLK--PPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTL-- 201
              L  L L    L     +   G + LK L      +S  +    + +  TLE L L  
Sbjct: 80  QHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGIS-SIDFIPLHNQKTLESLYLGS 138

Query: 202 -----MNFDGFTHLNIDAPNLQFFDIGG----VFDDVTFENTFHLALVSIGLYVNVKNDQ 252
                +              L+  D               +      +S+ L  N     
Sbjct: 139 NHISSIKLPKGFPT----EKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGI 194

Query: 253 AMGPGNSCKLL-----------RFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDL 301
             G  +S                 F  L +     +     + +   ++   +     ++
Sbjct: 195 EPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEM 254

Query: 302 NYLSIRINFNDLEENLAALCLLRSSPNLQEL 332
           +  SI +  +      +          LQEL
Sbjct: 255 SVESINLQKHYFFNISSN--TFHCFSGLQEL 283

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 40.4 bits (95), Expect = 9e-04
 Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 2/65 (3%)

Query: 139 VPSSLFLCQNLIHLELFNCLLK--PPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTL 196
           +PS L     L  L L     +     +   F +L  L ++  T   ++    + +   L
Sbjct: 293 LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352

Query: 197 ERLTL 201
             L L
Sbjct: 353 RELDL 357

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 40.7 bits (95), Expect = 7e-04
 Identities = 42/281 (14%), Positives = 77/281 (27%), Gaps = 30/281 (10%)

Query: 64  NHCVSTSSQDQTFIKNKLVNIVDHVLLLHNGPILK-FKLSHRDLLGVSDIDRWILYMSRS 122
            H  S    +    +   ++  D   +  N   L   K+   ++L +    +    +   
Sbjct: 189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEF 248

Query: 123 CVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITL 181
           C      +I   ++Y    +L   + L  L L        P  F     ++ LDL +  L
Sbjct: 249 CGGSLNEDIGMPEKY---MNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALL 305

Query: 182 SQDVFENLISSSPTLERLTLMNF---DGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLA 238
             +    LI   P LE L   N     G   L      L+   I     D          
Sbjct: 306 ETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIER-GADEQGMEDEEGL 364

Query: 239 LVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPC 298
           +   GL                           +  + +    +   ++ ++ + L    
Sbjct: 365 VSQRGLI------------------ALAQGCQELEYMAVYVSDITNESLESIGTYLKN-L 405

Query: 299 VDLNYLSIRI--NFNDLEENLAALCLLRSSPNLQELEMLAR 337
            D   + +       DL  +     LL     L+      R
Sbjct: 406 CDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLR 446

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 40.9 bits (96), Expect = 7e-04
 Identities = 37/199 (18%), Positives = 71/199 (35%), Gaps = 23/199 (11%)

Query: 147 QNLIHLELFNCLLK--PPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNF 204
            +L HL+L +  L     S F    +LK L+L           +L  +   L+ L + N 
Sbjct: 74  GSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNV 133

Query: 205 DGFTHLNIDA----PNLQFFDIGG----VFDDVTFENTFHLALVSIGLYVNVKNDQAMGP 256
           + F+ +         +L   +I       +   + ++   +  ++  L+++         
Sbjct: 134 ETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLT--LHLS--------- 182

Query: 257 GNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEEN 316
            ++  L  F   L  +R LE++   L        P  +      +  L+ R +    E  
Sbjct: 183 ESAFLLEIFADILSSVRYLELRDTNLARFQFS--PLPVDEVSSPMKKLAFRGSVLTDESF 240

Query: 317 LAALCLLRSSPNLQELEML 335
              L LLR    L E+E  
Sbjct: 241 NELLKLLRYILELSEVEFD 259

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	430
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.83
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.83
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.79
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.32
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.12
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.1
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.02
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.01
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.98
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.94
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.93
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.9
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.9
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.89
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.86
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.85
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.85
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.85
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.84
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.84
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.84
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.83
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.83
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.83
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.83
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.83
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.81
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.81
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.8
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.79
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.79
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.78
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.78
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.76
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.75
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.74
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.74
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.74
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.74
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.73
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.73
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.72
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.72
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.72
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.7
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.7
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.7
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.66
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.64
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.64
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.64
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.63
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.62
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.61
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.61
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.6
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.6
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.6
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.6
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.59
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.58
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.56
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.56
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.56
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.56
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.56
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.55
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.54
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.53
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.53
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.53
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.52
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.52
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.51
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.51
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.5
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.49
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.49
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.47
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.47
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.46
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.45
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.44
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.41
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.41
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.38
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.37
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.35
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.35
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.33
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.31
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.29
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.28
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.25
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.23
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.21
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.21
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.2
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.2
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.19
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.18
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.17
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.14
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.08
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.05
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.04
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	98.0
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	97.99
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	97.93
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	97.91
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	97.88
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	97.86
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	97.85
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	97.84
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	97.83
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	97.81
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.8
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	97.8
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	97.78
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	97.74
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	97.74
3e6j_A	229	Variable lymphocyte receptor diversity region; var	97.73
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	97.68
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.64
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	97.63
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.62
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	97.6
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.53
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.49
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.47
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	97.44
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	97.4
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.39
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.37
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.27
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	97.24
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.2
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.01
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	96.96
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	96.94
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	96.9
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	96.85
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	96.71
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	96.69
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	96.5
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	96.35
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	96.32
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	96.23
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	95.89
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	95.44
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	95.32
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	95.18
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	94.11
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	93.71
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	92.77
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	86.84
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	85.34
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	84.78
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	80.83

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.83  E-value=1.9e-20  Score=190.36  Aligned_cols=181  Identities=10%  Similarity=0.131  Sum_probs=95.3

Q ss_pred             CCCcHHHHHHHHcCC-CchhhhhhhhhhhhhHhhcCcCCe-eEEcCCCCCCCCc------------c-----hhH-----
Q 014150           21 SSLPAHVIDQILSQL-PIRDAVRTSVLSKKWRYKWATVPH-LVFDNHCVSTSSQ------------D-----QTF-----   76 (430)
Q Consensus        21 s~LPdelL~~Ils~L-~~~d~~r~s~vskrWr~lw~~~~~-l~~~~~~~~~~~~------------~-----~~~-----   76 (430)
                      ++||||+|.+||+|| +.+|++++++|||||++++...+. +.+.. .+.....            +     ...     
T Consensus        14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~   92 (592)
T 3ogk_B           14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMAL-CYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLI   92 (592)
T ss_dssp             CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESC-GGGSCHHHHHHHCTTCSEEEEECSCGGGGGTCS
T ss_pred             CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEee-ccccChHHHHHhCCCCeEEEecCCcchhhcccc
Confidence            389999999999999 899999999999999998543322 22211 1100000            0     000     


Q ss_pred             --hHhH-HHHHHHHHHHhCCCceeEEEEEeccCCCcchHHHHHHHHHhCCceEEEEEecCC-CcccCCCcccccCceeEE
Q 014150           77 --IKNK-LVNIVDHVLLLHNGPILKFKLSHRDLLGVSDIDRWILYMSRSCVKEFILEIWKG-QRYKVPSSLFLCQNLIHL  152 (430)
Q Consensus        77 --~~~~-~~~~v~~~l~~~~~~l~~l~l~~~~~~~~~~v~~wl~~~~~~~l~~l~l~~~~~-~~~~lp~~~~~~~~L~~L  152 (430)
                        .... ....+.. +..+...++.+.+..... . .....|+......++++|++..+.. ....++.....|++|++|
T Consensus        93 ~~~~~~~~~~~l~~-l~~~~~~L~~L~L~~~~i-~-~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L  169 (592)
T 3ogk_B           93 PENWGGYVTPWVTE-ISNNLRQLKSVHFRRMIV-S-DLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTL  169 (592)
T ss_dssp             CTTSCCBCHHHHHH-HHHHCTTCCEEEEESCBC-C-HHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEE
T ss_pred             cccccccchHHHHH-HHhhCCCCCeEEeeccEe-c-HHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEE
Confidence              0000 0000111 111222344444443211 1 1112233222223366666644321 111233333356777777


Q ss_pred             EEeeeeecCCC------CCCCCCCcceEEeeeEEec---hhhHHHHhhcCccccceEeeccC
Q 014150          153 ELFNCLLKPPS------TFKGFRNLKSLDLQHITLS---QDVFENLISSSPTLERLTLMNFD  205 (430)
Q Consensus       153 ~L~~~~~~~~~------~~~~~~~L~~L~L~~~~~~---~~~l~~l~s~cp~Le~L~l~~c~  205 (430)
                      +|++|.+.+..      ...++++|++|+|.++.++   ...+..++.+||+|++|.+.+|.
T Consensus       170 ~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~  231 (592)
T 3ogk_B          170 LMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE  231 (592)
T ss_dssp             ECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB
T ss_pred             ECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc
Confidence            77777664421      1125677888888777654   45677777888888888888763

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.83  E-value=9.7e-21  Score=192.65  Aligned_cols=184  Identities=17%  Similarity=0.198  Sum_probs=100.1

Q ss_pred             CcccCCCcHHHHHHHHcCCC-chhhhhhhhhhhhhHhhcC-cCCeeEEcCCCCCCC------------------CcchhH
Q 014150           17 LDRLSSLPAHVIDQILSQLP-IRDAVRTSVLSKKWRYKWA-TVPHLVFDNHCVSTS------------------SQDQTF   76 (430)
Q Consensus        17 ~d~is~LPdelL~~Ils~L~-~~d~~r~s~vskrWr~lw~-~~~~l~~~~~~~~~~------------------~~~~~~   76 (430)
                      .|++++||||||.+||+||+ .+|++++++|||||+++.. ....+.+.......+                  ......
T Consensus         3 ~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~   82 (594)
T 2p1m_B            3 KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADF   82 (594)
T ss_dssp             -------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGGG
T ss_pred             ccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccCHHHHHhhCCCceEEeccCCCchhhc
Confidence            58999999999999999999 9999999999999998721 122233322111000                  000000


Q ss_pred             h------HhHHHHHHHHHHHhCCCceeEEEEEeccCCCcchHHHHHHHHHhCCceEEEEEecCC-CcccCCCcccccCce
Q 014150           77 I------KNKLVNIVDHVLLLHNGPILKFKLSHRDLLGVSDIDRWILYMSRSCVKEFILEIWKG-QRYKVPSSLFLCQNL  149 (430)
Q Consensus        77 ~------~~~~~~~v~~~l~~~~~~l~~l~l~~~~~~~~~~v~~wl~~~~~~~l~~l~l~~~~~-~~~~lp~~~~~~~~L  149 (430)
                      .      .......+..+. .+...++.+.+..... ....+.....  ..+++++|++..+.. ....++.....|++|
T Consensus        83 ~l~~~~~~~~~~~~l~~l~-~~~~~L~~L~L~~~~~-~~~~~~~l~~--~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L  158 (594)
T 2p1m_B           83 NLVPDGWGGYVYPWIEAMS-SSYTWLEEIRLKRMVV-TDDCLELIAK--SFKNFKVLVLSSCEGFSTDGLAAIAATCRNL  158 (594)
T ss_dssp             TCSCTTSCCBCHHHHHHHH-HHCTTCCEEEEESCBC-CHHHHHHHHH--HCTTCCEEEEESCEEEEHHHHHHHHHHCTTC
T ss_pred             ccccccccchhhHHHHHHH-HhCCCCCeEEeeCcEE-cHHHHHHHHH--hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCC
Confidence            0      000001111111 2233466666665421 1111111110  235677776654421 111233434467888


Q ss_pred             eEEEEeeeeecCCC-----C-CCCCCCcceEEeeeEE--echhhHHHHhhcCccccceEeecc
Q 014150          150 IHLELFNCLLKPPS-----T-FKGFRNLKSLDLQHIT--LSQDVFENLISSSPTLERLTLMNF  204 (430)
Q Consensus       150 ~~L~L~~~~~~~~~-----~-~~~~~~L~~L~L~~~~--~~~~~l~~l~s~cp~Le~L~l~~c  204 (430)
                      ++|+|++|.+.+..     . ...+++|++|+|.++.  +++..+..++..||+|++|.+.+|
T Consensus       159 ~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          159 KELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             CEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred             CEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence            88888888765421     1 2267889999998885  666778888888999999998876

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.79  E-value=6.4e-21  Score=179.96  Aligned_cols=142  Identities=18%  Similarity=0.187  Sum_probs=81.2

Q ss_pred             CcccCCCcHHHHHHHHcCCCchhhhhhhhhhhhhHhhcCc---CCeeEEcCCCCCCCCcchhHhHhHHHHHHHHHHHhCC
Q 014150           17 LDRLSSLPAHVIDQILSQLPIRDAVRTSVLSKKWRYKWAT---VPHLVFDNHCVSTSSQDQTFIKNKLVNIVDHVLLLHN   93 (430)
Q Consensus        17 ~d~is~LPdelL~~Ils~L~~~d~~r~s~vskrWr~lw~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~   93 (430)
                      ...+++||||++.+||++|+.+|+++++.|||+|+++...   +..+++......                         
T Consensus         6 ~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~~~-------------------------   60 (336)
T 2ast_B            6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLH-------------------------   60 (336)
T ss_dssp             -CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCBCC-------------------------
T ss_pred             cCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccccccCC-------------------------
Confidence            3458999999999999999999999999999999998532   223333221111                         


Q ss_pred             CceeEEEEEeccCCCcchHHHHHHHHHhCCceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecC---CCCCCCCCC
Q 014150           94 GPILKFKLSHRDLLGVSDIDRWILYMSRSCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP---PSTFKGFRN  170 (430)
Q Consensus        94 ~~l~~l~l~~~~~~~~~~v~~wl~~~~~~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~---~~~~~~~~~  170 (430)
                                         ...+.....++++.+++....  ....+..++.+++|++|++++|.+..   +..+.++++
T Consensus        61 -------------------~~~~~~~~~~~l~~L~l~~n~--l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~  119 (336)
T 2ast_B           61 -------------------PDVTGRLLSQGVIAFRCPRSF--MDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSK  119 (336)
T ss_dssp             -------------------HHHHHHHHHTTCSEEECTTCE--ECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCC
T ss_pred             -------------------HHHHHhhhhccceEEEcCCcc--ccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCC
Confidence                               111122223444444442111  01122224455666666666665532   123445666


Q ss_pred             cceEEeeeEEechhhHHHHhhcCccccceEeeccC
Q 014150          171 LKSLDLQHITLSQDVFENLISSSPTLERLTLMNFD  205 (430)
Q Consensus       171 L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~  205 (430)
                      |++|+|.++.+++... ..++.|++|++|.+.+|.
T Consensus       120 L~~L~L~~~~l~~~~~-~~l~~~~~L~~L~L~~~~  153 (336)
T 2ast_B          120 LQNLSLEGLRLSDPIV-NTLAKNSNLVRLNLSGCS  153 (336)
T ss_dssp             CSEEECTTCBCCHHHH-HHHTTCTTCSEEECTTCB
T ss_pred             CCEEeCcCcccCHHHH-HHHhcCCCCCEEECCCCC
Confidence            6666666666554432 234456666666666663

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.32  E-value=3.2e-12  Score=119.75  Aligned_cols=196  Identities=19%  Similarity=0.150  Sum_probs=120.9

Q ss_pred             HHhCCceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecC-CCCCCCCCCcceEEeeeEEechhhHHHHhhcCcccc
Q 014150          119 MSRSCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLE  197 (430)
Q Consensus       119 ~~~~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le  197 (430)
                      ....+++.+++.....  ..+|..+..+++|++|+|++|.+.. |..+.++++|++|+|+++.+.  .+...+..+++|+
T Consensus        78 ~~~~~l~~L~L~~n~l--~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~  153 (328)
T 4fcg_A           78 ATQPGRVALELRSVPL--PQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR--ALPASIASLNRLR  153 (328)
T ss_dssp             HTSTTCCEEEEESSCC--SSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC--CCCGGGGGCTTCC
T ss_pred             ccccceeEEEccCCCc--hhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc--cCcHHHhcCcCCC
Confidence            3446788888876543  3788888889999999999998765 556788999999999999876  3455578899999


Q ss_pred             ceEeeccCCceEEE------------EeCCCcceEEEecccc-c--eeeccCCCceEEEEEEEeeccccccCCCCCcchH
Q 014150          198 RLTLMNFDGFTHLN------------IDAPNLQFFDIGGVFD-D--VTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKL  262 (430)
Q Consensus       198 ~L~l~~c~~~~~l~------------i~~p~L~~L~l~~~~~-~--~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~  262 (430)
                      .|.+.+|.....+.            -..++|+.|++.++.- .  ..+..+++|+.|+++.+.....            
T Consensus       154 ~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l------------  221 (328)
T 4fcg_A          154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSAL------------  221 (328)
T ss_dssp             EEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCC------------
T ss_pred             EEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcC------------
Confidence            99999886543221            1256677777665321 1  1245666777777765432211            


Q ss_pred             HHHhccCCCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCC
Q 014150          263 LRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPE  339 (430)
Q Consensus       263 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~  339 (430)
                      ...+..+++|++|+++++....    ..+..+. .+++|+.|+++.+....    .++.-+..+++|+.|+|+++..
T Consensus       222 ~~~l~~l~~L~~L~Ls~n~~~~----~~p~~~~-~l~~L~~L~L~~n~~~~----~~p~~~~~l~~L~~L~L~~n~~  289 (328)
T 4fcg_A          222 GPAIHHLPKLEELDLRGCTALR----NYPPIFG-GRAPLKRLILKDCSNLL----TLPLDIHRLTQLEKLDLRGCVN  289 (328)
T ss_dssp             CGGGGGCTTCCEEECTTCTTCC----BCCCCTT-CCCCCCEEECTTCTTCC----BCCTTGGGCTTCCEEECTTCTT
T ss_pred             chhhccCCCCCEEECcCCcchh----hhHHHhc-CCCCCCEEECCCCCchh----hcchhhhcCCCCCEEeCCCCCc
Confidence            1124566777777776643321    1111111 35566666663321111    1223356677777777776543

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.12  E-value=5.4e-11  Score=120.59  Aligned_cols=211  Identities=17%  Similarity=0.141  Sum_probs=99.9

Q ss_pred             CCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCc---eEEEEeCCCcceEEEec----------c--ccce--
Q 014150          167 GFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGF---THLNIDAPNLQFFDIGG----------V--FDDV--  229 (430)
Q Consensus       167 ~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~---~~l~i~~p~L~~L~l~~----------~--~~~~--  229 (430)
                      .+++|++|+|.++.+++..+..++..||+|++|.+.++-..   ..+.-..++|++|++.+          +  ....  
T Consensus       291 ~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~  370 (592)
T 3ogk_B          291 FAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGL  370 (592)
T ss_dssp             GGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHH
T ss_pred             hcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHH
Confidence            45666666666666655555556666666666666532110   00111245666666662          1  1100  


Q ss_pred             --eeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeee----eeehhhcccCCCCCCccccccce
Q 014150          230 --TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSY----FLKYLAIGNVPSRLPRPCVDLNY  303 (430)
Q Consensus       230 --~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~----~~~~~~~~~~~~~~~~~~~~L~~  303 (430)
                        ....+++|++|++.. ...         ....+..+..++++|++|.++..    .+...........+...+++|++
T Consensus       371 ~~l~~~~~~L~~L~l~~-~~l---------~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~  440 (592)
T 3ogk_B          371 IALAQGCQELEYMAVYV-SDI---------TNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRR  440 (592)
T ss_dssp             HHHHHHCTTCSEEEEEE-SCC---------CHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCE
T ss_pred             HHHHhhCccCeEEEeec-CCc---------cHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCE
Confidence              123466666666622 111         22233344444667777776521    11100000000000113556777


Q ss_pred             eEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCCCCcccccccceecccccccccCceEEEEEeeecCccHHHHHHHH
Q 014150          304 LSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNFWEVDHWTSLFSQLRMVKIVGISGIRSELEFIKFV  383 (430)
Q Consensus       304 L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~w~~~~~~~~~~~L~~v~i~~~~~~~~e~~~~~~i  383 (430)
                      |++..+.... ....+..+...+|+|+.|+|..+....   ..     -...-..+++|+.+.+.+..-  .+ .-+..+
T Consensus       441 L~L~~~~~~l-~~~~~~~~~~~~~~L~~L~L~~n~l~~---~~-----~~~~~~~~~~L~~L~l~~n~l--~~-~~~~~~  508 (592)
T 3ogk_B          441 FAFYLRQGGL-TDLGLSYIGQYSPNVRWMLLGYVGESD---EG-----LMEFSRGCPNLQKLEMRGCCF--SE-RAIAAA  508 (592)
T ss_dssp             EEEECCGGGC-CHHHHHHHHHSCTTCCEEEECSCCSSH---HH-----HHHHHTCCTTCCEEEEESCCC--BH-HHHHHH
T ss_pred             EEEecCCCCc-cHHHHHHHHHhCccceEeeccCCCCCH---HH-----HHHHHhcCcccCeeeccCCCC--cH-HHHHHH
Confidence            7775432110 112345555667777777776554210   00     000001246777777776542  11 223334


Q ss_pred             HccCCCcceEEEeecC
Q 014150          384 LSNSPVLETMTIKPAS  399 (430)
Q Consensus       384 l~~~~~L~~l~i~~~~  399 (430)
                      ..+.++|+.+.++.+.
T Consensus       509 ~~~l~~L~~L~ls~n~  524 (592)
T 3ogk_B          509 VTKLPSLRYLWVQGYR  524 (592)
T ss_dssp             HHHCSSCCEEEEESCB
T ss_pred             HHhcCccCeeECcCCc
Confidence            5567888888887765

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.11  E-value=2.5e-11  Score=114.02  Aligned_cols=204  Identities=14%  Similarity=0.162  Sum_probs=120.9

Q ss_pred             HHHHHHHhC-CceEEEEEecCCCcccCCCccccc--CceeEEEEeeeeecC-CCCCCCCCCcceEEeeeEEechhhHHHH
Q 014150          114 RWILYMSRS-CVKEFILEIWKGQRYKVPSSLFLC--QNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITLSQDVFENL  189 (430)
Q Consensus       114 ~wl~~~~~~-~l~~l~l~~~~~~~~~lp~~~~~~--~~L~~L~L~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l  189 (430)
                      .|-..+..+ ..+.+++.....   . +..+...  ++++.|+++++.+.. +..+..+++|+.|+|.++.+++..+..+
T Consensus        38 ~W~~~~~~~~~~~~l~l~~~~~---~-~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~  113 (336)
T 2ast_B           38 RWYRLASDESLWQTLDLTGKNL---H-PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGI  113 (336)
T ss_dssp             HHHHHHTCSTTSSEEECTTCBC---C-HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHH
T ss_pred             HHHHHhcCchhheeeccccccC---C-HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHH
Confidence            565544333 356666542211   1 2233344  789999999998865 3445689999999999999988778889


Q ss_pred             hhcCccccceEeeccCCceEE---EEeCCCcceEEEeccc--cc----eeeccCCCceEEEEEEEeeccccccCCCCCcc
Q 014150          190 ISSSPTLERLTLMNFDGFTHL---NIDAPNLQFFDIGGVF--DD----VTFENTFHLALVSIGLYVNVKNDQAMGPGNSC  260 (430)
Q Consensus       190 ~s~cp~Le~L~l~~c~~~~~l---~i~~p~L~~L~l~~~~--~~----~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~  260 (430)
                      +..|++|++|.+.+|.-....   --..++|++|++.++.  ..    ..+..+++|++|+++.+...         ...
T Consensus       114 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l---------~~~  184 (336)
T 2ast_B          114 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDF---------TEK  184 (336)
T ss_dssp             HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTC---------CHH
T ss_pred             HhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCc---------ChH
Confidence            999999999999988421100   0124777777777642  11    12345777777777654211         222


Q ss_pred             hHHHHhccCC-CccEEEEeeeee--ehhhcccCCCCCCccccccceeEEEEee-CChhhHHHHHHHHhcCCCccEEEEee
Q 014150          261 KLLRFFVHLP-HIRRLEIQSYFL--KYLAIGNVPSRLPRPCVDLNYLSIRINF-NDLEENLAALCLLRSSPNLQELEMLA  336 (430)
Q Consensus       261 ~~~~~l~~~~-~L~~L~l~~~~~--~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~ll~~~p~L~~L~l~~  336 (430)
                      .+...+..++ +|++|.++++..  .......    ....+++|++|+++.+. ....    ....+..+|+|+.|++.+
T Consensus       185 ~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~----~~~~~~~L~~L~l~~~~~l~~~----~~~~l~~l~~L~~L~l~~  256 (336)
T 2ast_B          185 HVQVAVAHVSETITQLNLSGYRKNLQKSDLST----LVRRCPNLVHLDLSDSVMLKND----CFQEFFQLNYLQHLSLSR  256 (336)
T ss_dssp             HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH----HHHHCTTCSEEECTTCTTCCGG----GGGGGGGCTTCCEEECTT
T ss_pred             HHHHHHHhcccCCCEEEeCCCcccCCHHHHHH----HHhhCCCCCEEeCCCCCcCCHH----HHHHHhCCCCCCEeeCCC
Confidence            3445566777 777777776532  1000000    01135577777774433 1111    112345667777777777


Q ss_pred             cC
Q 014150          337 RP  338 (430)
Q Consensus       337 ~~  338 (430)
                      +.
T Consensus       257 ~~  258 (336)
T 2ast_B          257 CY  258 (336)
T ss_dssp             CT
T ss_pred             CC
Confidence            64

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.10  E-value=2.7e-12  Score=126.02  Aligned_cols=288  Identities=15%  Similarity=0.054  Sum_probs=166.2

Q ss_pred             ceeEEEEEeccCCCcchHHHHHH-HHHhCCceEEEEEecCCCcc---cCCCcccccCceeEEEEeeeeecC--CCCC-CC
Q 014150           95 PILKFKLSHRDLLGVSDIDRWIL-YMSRSCVKEFILEIWKGQRY---KVPSSLFLCQNLIHLELFNCLLKP--PSTF-KG  167 (430)
Q Consensus        95 ~l~~l~l~~~~~~~~~~v~~wl~-~~~~~~l~~l~l~~~~~~~~---~lp~~~~~~~~L~~L~L~~~~~~~--~~~~-~~  167 (430)
                      .++.+.+.+...   ... .|.. ....++++.+++..+.....   .++..+..+++|++|+|++|.+.+  +..+ ..
T Consensus         4 ~l~~L~Ls~~~l---~~~-~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~   79 (461)
T 1z7x_W            4 DIQSLDIQCEEL---SDA-RWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQG   79 (461)
T ss_dssp             EEEEEEEESCCC---CHH-HHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHT
T ss_pred             cceehhhhhccc---Cch-hHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHH
Confidence            366777766432   222 2332 23447899999987654322   456667778999999999987754  1111 13


Q ss_pred             CC----CcceEEeeeEEechh---hHHHHhhcCccccceEeeccCCce----EE----EEeCCCcceEEEecccc-c---
Q 014150          168 FR----NLKSLDLQHITLSQD---VFENLISSSPTLERLTLMNFDGFT----HL----NIDAPNLQFFDIGGVFD-D---  228 (430)
Q Consensus       168 ~~----~L~~L~L~~~~~~~~---~l~~l~s~cp~Le~L~l~~c~~~~----~l----~i~~p~L~~L~l~~~~~-~---  228 (430)
                      ++    +|++|+|.++.+++.   .+...+..|++|++|+++++.-..    .+    .-..++|++|.+.++.- .   
T Consensus        80 l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~  159 (461)
T 1z7x_W           80 LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC  159 (461)
T ss_dssp             TCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred             HhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHH
Confidence            44    799999999998764   456677889999999999875211    00    00135799998876421 1   


Q ss_pred             ----eeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHh-ccCCCccEEEEeeeeeehhhcccCCCCCCccccccce
Q 014150          229 ----VTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFF-VHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNY  303 (430)
Q Consensus       229 ----~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~  303 (430)
                          ..+..+++|++|+++.+...+.       ....+...+ ...++|++|+++.+.+........+..+ ..+++|++
T Consensus       160 ~~l~~~l~~~~~L~~L~L~~n~i~~~-------~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l-~~~~~L~~  231 (461)
T 1z7x_W          160 EPLASVLRAKPDFKELTVSNNDINEA-------GVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIV-ASKASLRE  231 (461)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSBCHHH-------HHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHH-HHCTTCCE
T ss_pred             HHHHHHHhhCCCCCEEECcCCCcchH-------HHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHH-HhCCCccE
Confidence                1234578899998875442110       011122212 2456899999988765431110000000 13568888


Q ss_pred             eEEEEeeCChhhHHHH-HHHHhcCCCccEEEEeecCCCCcccccccceecccccccccCceEEEEEeeecC-ccHHHHHH
Q 014150          304 LSIRINFNDLEENLAA-LCLLRSSPNLQELEMLARPEETGIGVLTNFWEVDHWTSLFSQLRMVKIVGISGI-RSELEFIK  381 (430)
Q Consensus       304 L~l~~~~~~~~~~~~l-~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~w~~~~~~~~~~~L~~v~i~~~~~~-~~e~~~~~  381 (430)
                      |+++.+......+..+ ..+...+++|++|+++++.-....   ...... .. ..+++|+.+.+.+-.-. .....+..
T Consensus       232 L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~---~~~l~~-~l-~~~~~L~~L~Ls~n~i~~~~~~~l~~  306 (461)
T 1z7x_W          232 LALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKG---CGDLCR-VL-RAKESLKELSLAGNELGDEGARLLCE  306 (461)
T ss_dssp             EECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHH---HHHHHH-HH-HHCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred             EeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHH---HHHHHH-HH-hhCCCcceEECCCCCCchHHHHHHHH
Confidence            8886543332222223 223346899999999887532100   000000 00 12578888888754321 22224555


Q ss_pred             HHHccCCCcceEEEeecC
Q 014150          382 FVLSNSPVLETMTIKPAS  399 (430)
Q Consensus       382 ~il~~~~~L~~l~i~~~~  399 (430)
                      .+..+.+.|+++.+..+.
T Consensus       307 ~l~~~~~~L~~L~L~~n~  324 (461)
T 1z7x_W          307 TLLEPGCQLESLWVKSCS  324 (461)
T ss_dssp             HHTSTTCCCCEEECTTSC
T ss_pred             HhccCCccceeeEcCCCC
Confidence            555566799999998776

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.07  E-value=1.8e-10  Score=108.70  Aligned_cols=243  Identities=14%  Similarity=0.065  Sum_probs=122.5

Q ss_pred             CCceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEe
Q 014150          122 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTL  201 (430)
Q Consensus       122 ~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l  201 (430)
                      ++++.+++..+..  ..++. +..+++|++|++++|.+...+.+..+++|++|+|.++.+.+-..   +..+++|+.|.+
T Consensus        66 ~~L~~L~l~~n~i--~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~l  139 (347)
T 4fmz_A           66 TNLEYLNLNGNQI--TDISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP---LANLTKMYSLNL  139 (347)
T ss_dssp             TTCCEEECCSSCC--CCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCGG---GTTCTTCCEEEC
T ss_pred             CCccEEEccCCcc--ccchh-hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCchh---hccCCceeEEEC
Confidence            5667766654322  22333 55667777777777766655556677777777777776543211   556777777777


Q ss_pred             eccCCceEEE--EeCCCcceEEEecccc-c-eeeccCCCceEEEEEEEeeccccc--cC--------CCCCcchHHHHhc
Q 014150          202 MNFDGFTHLN--IDAPNLQFFDIGGVFD-D-VTFENTFHLALVSIGLYVNVKNDQ--AM--------GPGNSCKLLRFFV  267 (430)
Q Consensus       202 ~~c~~~~~l~--i~~p~L~~L~l~~~~~-~-~~~~~~p~L~~l~i~~~~~~~~~~--~~--------~~~~~~~~~~~l~  267 (430)
                      .+|.....+.  -..++|+.|.+.++.. . ..+..+++|+.++++.+.......  ..        .......+. .+.
T Consensus       140 ~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~  218 (347)
T 4fmz_A          140 GANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDIT-PVA  218 (347)
T ss_dssp             TTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGG
T ss_pred             CCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCc-hhh
Confidence            7664332111  1234566666554321 1 113455566666554332211100  00        000000000 045


Q ss_pred             cCCCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCCCCcccccc
Q 014150          268 HLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLT  347 (430)
Q Consensus       268 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~  347 (430)
                      .+++|++|.++++.+.....       ...+++|+.|+++.+....     + ..+..+|+|+.|++.++.-..      
T Consensus       219 ~~~~L~~L~l~~n~l~~~~~-------~~~l~~L~~L~l~~n~l~~-----~-~~~~~l~~L~~L~l~~n~l~~------  279 (347)
T 4fmz_A          219 NMTRLNSLKIGNNKITDLSP-------LANLSQLTWLEIGTNQISD-----I-NAVKDLTKLKMLNVGSNQISD------  279 (347)
T ss_dssp             GCTTCCEEECCSSCCCCCGG-------GTTCTTCCEEECCSSCCCC-----C-GGGTTCTTCCEEECCSSCCCC------
T ss_pred             cCCcCCEEEccCCccCCCcc-------hhcCCCCCEEECCCCccCC-----C-hhHhcCCCcCEEEccCCccCC------
Confidence            55666666666554432111       1134566666664332211     1 135566777777776654221      


Q ss_pred             cceecccccccccCceEEEEEeeecCccHHHHHHHHHccCCCcceEEEeecC
Q 014150          348 NFWEVDHWTSLFSQLRMVKIVGISGIRSELEFIKFVLSNSPVLETMTIKPAS  399 (430)
Q Consensus       348 ~~w~~~~~~~~~~~L~~v~i~~~~~~~~e~~~~~~il~~~~~L~~l~i~~~~  399 (430)
                        + +  .-..+.+|+.+.+.+..-...    ....+.+.++|+.+.++.+.
T Consensus       280 --~-~--~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~  322 (347)
T 4fmz_A          280 --I-S--VLNNLSQLNSLFLNNNQLGNE----DMEVIGGLTNLTTLFLSQNH  322 (347)
T ss_dssp             --C-G--GGGGCTTCSEEECCSSCCCGG----GHHHHHTCTTCSEEECCSSS
T ss_pred             --C-h--hhcCCCCCCEEECcCCcCCCc----ChhHhhccccCCEEEccCCc
Confidence              0 0  112457788888776433221    12335677889888888766

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.06  E-value=7e-10  Score=104.91  Aligned_cols=111  Identities=14%  Similarity=0.094  Sum_probs=64.1

Q ss_pred             HhccCCCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCCCCccc
Q 014150          265 FFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIG  344 (430)
Q Consensus       265 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~  344 (430)
                      ++..+++|+.|+++++.+........  ........++.+++.........+..++..+..+++|+.|+++++.-...  
T Consensus       217 ~~~~~~~L~~L~L~~n~l~~~~~~~l--~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i--  292 (353)
T 2z80_A          217 FVDVTSSVECLELRDTDLDTFHFSEL--STGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSV--  292 (353)
T ss_dssp             HHHHTTTEEEEEEESCBCTTCCCC--------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCC--
T ss_pred             hhhhcccccEEECCCCcccccccccc--ccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCcc--
Confidence            34557788888887776543221111  01113456777777655445555666778889999999999998753310  


Q ss_pred             ccccceecccccccccCceEEEEEee--ecCccHHHHHHHHHcc
Q 014150          345 VLTNFWEVDHWTSLFSQLRMVKIVGI--SGIRSELEFIKFVLSN  386 (430)
Q Consensus       345 ~~~~~w~~~~~~~~~~~L~~v~i~~~--~~~~~e~~~~~~il~~  386 (430)
                             +...-..+++|+.+.+.+-  .+....+.+....+++
T Consensus       293 -------~~~~~~~l~~L~~L~L~~N~~~~~~~~l~~l~~~~~~  329 (353)
T 2z80_A          293 -------PDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK  329 (353)
T ss_dssp             -------CTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHH
T ss_pred             -------CHHHHhcCCCCCEEEeeCCCccCcCCCcHHHHHHHHh
Confidence                   0001124578888888753  4434445555444443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.02  E-value=1.4e-11  Score=121.00  Aligned_cols=184  Identities=19%  Similarity=0.184  Sum_probs=87.4

Q ss_pred             ceeEEEEeeeeecC------CCCCCCCCCcceEEeeeEEechhhHHHHhh----cCccccceEeeccCCceE----E---
Q 014150          148 NLIHLELFNCLLKP------PSTFKGFRNLKSLDLQHITLSQDVFENLIS----SSPTLERLTLMNFDGFTH----L---  210 (430)
Q Consensus       148 ~L~~L~L~~~~~~~------~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s----~cp~Le~L~l~~c~~~~~----l---  210 (430)
                      +|++|+|++|.+.+      +..+..+++|++|+|+++.+++.....+..    ..++|++|.+.+|.-...    +   
T Consensus        86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~  165 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV  165 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred             ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence            57777777666543      233456667777777776665544333322    245577777766531110    0   


Q ss_pred             EEeCCCcceEEEecccc-c---eee-----ccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeee
Q 014150          211 NIDAPNLQFFDIGGVFD-D---VTF-----ENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYF  281 (430)
Q Consensus       211 ~i~~p~L~~L~l~~~~~-~---~~~-----~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~  281 (430)
                      --..++|++|++.++.- .   ..+     ...++|+.|+++.+.....       ....+...+..+++|++|+++.+.
T Consensus       166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~-------~~~~l~~~l~~~~~L~~L~Ls~n~  238 (461)
T 1z7x_W          166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSD-------NCRDLCGIVASKASLRELALGSNK  238 (461)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTT-------HHHHHHHHHHHCTTCCEEECCSSB
T ss_pred             HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHH-------HHHHHHHHHHhCCCccEEeccCCc
Confidence            00135666666665321 0   001     1244666666654422100       111234445566667777666654


Q ss_pred             eehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecC
Q 014150          282 LKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARP  338 (430)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~  338 (430)
                      +...........+...+++|++|+++.+......+..+...+..+++|++|+++++.
T Consensus       239 l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~  295 (461)
T 1z7x_W          239 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE  295 (461)
T ss_dssp             CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC
T ss_pred             CChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC
Confidence            332111000000000234666666644433333333455556666666666666543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.01  E-value=1.3e-10  Score=111.26  Aligned_cols=63  Identities=17%  Similarity=0.208  Sum_probs=35.7

Q ss_pred             ccccCceeEEEEeeeeecC-----CCC-------CCCCCCcceEEeeeEEechh---hHHHHhhcCccccceEeeccC
Q 014150          143 LFLCQNLIHLELFNCLLKP-----PST-------FKGFRNLKSLDLQHITLSQD---VFENLISSSPTLERLTLMNFD  205 (430)
Q Consensus       143 ~~~~~~L~~L~L~~~~~~~-----~~~-------~~~~~~L~~L~L~~~~~~~~---~l~~l~s~cp~Le~L~l~~c~  205 (430)
                      +..+++|++|+|++|.+..     |.+       +..+++|++|+|+++.+.+.   .+...+..|++|++|.+.+|.
T Consensus        56 l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~  133 (386)
T 2ca6_A           56 IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG  133 (386)
T ss_dssp             TTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred             HHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC
Confidence            4456667777776653321     111       24566777777777666543   234445666777777776653

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.98  E-value=2.6e-10  Score=115.61  Aligned_cols=233  Identities=16%  Similarity=0.148  Sum_probs=141.5

Q ss_pred             CCCcccccCceeEEEEeeeeecCC---CCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeecc--------CCc
Q 014150          139 VPSSLFLCQNLIHLELFNCLLKPP---STFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNF--------DGF  207 (430)
Q Consensus       139 lp~~~~~~~~L~~L~L~~~~~~~~---~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c--------~~~  207 (430)
                      ++..+..+++|++|++++|.+.+.   ..+.++++|++|++.++ +.+..+..+...|++|++|.+.+|        ..+
T Consensus       281 l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l  359 (594)
T 2p1m_B          281 LPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVAL  359 (594)
T ss_dssp             GGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCC
T ss_pred             HHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCC
Confidence            444444678899999988875431   11347899999999888 666777777778999999988543        222


Q ss_pred             eE-----EEEeCCCcceEEEeccc-cc---eee-ccCCCceEEEEEEEe-----eccccccCCCCCcchHHHHhccCCCc
Q 014150          208 TH-----LNIDAPNLQFFDIGGVF-DD---VTF-ENTFHLALVSIGLYV-----NVKNDQAMGPGNSCKLLRFFVHLPHI  272 (430)
Q Consensus       208 ~~-----l~i~~p~L~~L~l~~~~-~~---~~~-~~~p~L~~l~i~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~L  272 (430)
                      ..     +.-..|+|+.|.+.+.. ..   ..+ ..+|+|+.|++....     ....     .+....+..++.++++|
T Consensus       360 ~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~-----~~~~~~~~~l~~~~~~L  434 (594)
T 2p1m_B          360 TEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTL-----EPLDIGFGAIVEHCKDL  434 (594)
T ss_dssp             CHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTC-----CCTHHHHHHHHHHCTTC
T ss_pred             CHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccC-----CchhhHHHHHHhhCCCc
Confidence            21     11136889998665421 11   112 357899999998322     2110     01134556667889999


Q ss_pred             cEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCCCCcccccccceec
Q 014150          273 RRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNFWEV  352 (430)
Q Consensus       273 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~w~~  352 (430)
                      ++|++++ .+......    .+...+++|+.|+++.+....   .++..+...||+|++|+|+++....   ..     .
T Consensus       435 ~~L~L~~-~l~~~~~~----~l~~~~~~L~~L~L~~~~i~~---~~~~~l~~~~~~L~~L~L~~n~~~~---~~-----~  498 (594)
T 2p1m_B          435 RRLSLSG-LLTDKVFE----YIGTYAKKMEMLSVAFAGDSD---LGMHHVLSGCDSLRKLEIRDCPFGD---KA-----L  498 (594)
T ss_dssp             CEEECCS-SCCHHHHH----HHHHHCTTCCEEEEESCCSSH---HHHHHHHHHCTTCCEEEEESCSCCH---HH-----H
T ss_pred             cEEeecC-cccHHHHH----HHHHhchhccEeeccCCCCcH---HHHHHHHhcCCCcCEEECcCCCCcH---HH-----H
Confidence            9999975 22111110    111126689999997654332   2566677889999999999887420   00     0


Q ss_pred             ccccccccCceEEEEEeeecCccHHHHHHHHHccCCCcceEEEe
Q 014150          353 DHWTSLFSQLRMVKIVGISGIRSELEFIKFVLSNSPVLETMTIK  396 (430)
Q Consensus       353 ~~~~~~~~~L~~v~i~~~~~~~~e~~~~~~il~~~~~L~~l~i~  396 (430)
                      ......+++|+.+.+.+.....   .-++.+.+..|.|+...+.
T Consensus       499 ~~~~~~l~~L~~L~l~~~~~~~---~~~~~l~~~lp~l~i~~~~  539 (594)
T 2p1m_B          499 LANASKLETMRSLWMSSCSVSF---GACKLLGQKMPKLNVEVID  539 (594)
T ss_dssp             HHTGGGGGGSSEEEEESSCCBH---HHHHHHHHHCTTEEEEEEC
T ss_pred             HHHHHhCCCCCEEeeeCCCCCH---HHHHHHHHhCCCCEEEEec
Confidence            0011135789999998776532   2344455667777655554

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.94  E-value=2.1e-09  Score=107.86  Aligned_cols=73  Identities=23%  Similarity=0.174  Sum_probs=49.0

Q ss_pred             HhccCCCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCC
Q 014150          265 FFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPE  339 (430)
Q Consensus       265 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~  339 (430)
                      ++..+++|+.|+++.+.+......  +..+...+++|++|++............+...+..+++|+.|++..+..
T Consensus       191 ~~~~l~~L~~L~L~~n~l~~~~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~  263 (549)
T 2z81_A          191 FADILSSVRYLELRDTNLARFQFS--PLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL  263 (549)
T ss_dssp             HHHSTTTBSEEEEESCBCTTCCCC--CCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEE
T ss_pred             hHhhcccccEEEccCCcccccccc--ccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccc
Confidence            345689999999988766432211  1122234678999999655444444456777788899999999988653

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.94  E-value=1.5e-10  Score=108.41  Aligned_cols=219  Identities=14%  Similarity=0.099  Sum_probs=147.0

Q ss_pred             CCCceeEEEEEeccCCCcchHHHHHHHHHhCCceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecC-CCCCCCCCC
Q 014150           92 HNGPILKFKLSHRDLLGVSDIDRWILYMSRSCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP-PSTFKGFRN  170 (430)
Q Consensus        92 ~~~~l~~l~l~~~~~~~~~~v~~wl~~~~~~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~~  170 (430)
                      ....+..+.+.......   +...+.  .-..++.|++......  .+|..+..+++|++|+|++|.+.. |..+.++++
T Consensus        79 ~~~~l~~L~L~~n~l~~---lp~~l~--~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~  151 (328)
T 4fcg_A           79 TQPGRVALELRSVPLPQ---FPDQAF--RLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLRALPASIASLNR  151 (328)
T ss_dssp             TSTTCCEEEEESSCCSS---CCSCGG--GGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTT
T ss_pred             cccceeEEEccCCCchh---cChhhh--hCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccccCcHHHhcCcC
Confidence            34568889998864432   222111  2368999999765443  788888899999999999998765 556789999


Q ss_pred             cceEEeeeEEechhhHH--------HHhhcCccccceEeeccCCceEEE---EeCCCcceEEEecccc-c--eeeccCCC
Q 014150          171 LKSLDLQHITLSQDVFE--------NLISSSPTLERLTLMNFDGFTHLN---IDAPNLQFFDIGGVFD-D--VTFENTFH  236 (430)
Q Consensus       171 L~~L~L~~~~~~~~~l~--------~l~s~cp~Le~L~l~~c~~~~~l~---i~~p~L~~L~l~~~~~-~--~~~~~~p~  236 (430)
                      |+.|+|.+|.+....-.        ..+.++++|+.|.+.++.- ..+.   -..++|+.|++.++.- .  ..+..+++
T Consensus       152 L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l-~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~  230 (328)
T 4fcg_A          152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI-RSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPK  230 (328)
T ss_dssp             CCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECC-CCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTT
T ss_pred             CCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCc-CcchHhhcCCCCCCEEEccCCCCCcCchhhccCCC
Confidence            99999999864322111        1134599999999998742 2221   1347999999987432 1  13678899


Q ss_pred             ceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhH
Q 014150          237 LALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEEN  316 (430)
Q Consensus       237 L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  316 (430)
                      |+.|+++.+.....           +...+.++++|+.|+++++...    +..+..+ ..+++|++|+++.+....   
T Consensus       231 L~~L~Ls~n~~~~~-----------~p~~~~~l~~L~~L~L~~n~~~----~~~p~~~-~~l~~L~~L~L~~n~~~~---  291 (328)
T 4fcg_A          231 LEELDLRGCTALRN-----------YPPIFGGRAPLKRLILKDCSNL----LTLPLDI-HRLTQLEKLDLRGCVNLS---  291 (328)
T ss_dssp             CCEEECTTCTTCCB-----------CCCCTTCCCCCCEEECTTCTTC----CBCCTTG-GGCTTCCEEECTTCTTCC---
T ss_pred             CCEEECcCCcchhh-----------hHHHhcCCCCCCEEECCCCCch----hhcchhh-hcCCCCCEEeCCCCCchh---
Confidence            99999976543221           1123678899999999976432    1222222 256789999885532221   


Q ss_pred             HHHHHHHhcCCCccEEEEeecC
Q 014150          317 LAALCLLRSSPNLQELEMLARP  338 (430)
Q Consensus       317 ~~l~~ll~~~p~L~~L~l~~~~  338 (430)
                       .++..+..+++|+.+.+....
T Consensus       292 -~iP~~l~~L~~L~~l~l~~~~  312 (328)
T 4fcg_A          292 -RLPSLIAQLPANCIILVPPHL  312 (328)
T ss_dssp             -CCCGGGGGSCTTCEEECCGGG
T ss_pred             -hccHHHhhccCceEEeCCHHH
Confidence             356678899999999887643

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.93  E-value=1.1e-08  Score=96.50  Aligned_cols=159  Identities=18%  Similarity=0.181  Sum_probs=77.6

Q ss_pred             cccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEEEeCCCcceEE
Q 014150          144 FLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFD  221 (430)
Q Consensus       144 ~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~i~~p~L~~L~  221 (430)
                      ..+++|++|++++|.+..  +..+.++++|++|+|+++.+..- ....+..+++|++|.+.++.-. .            
T Consensus        73 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~-~------------  138 (353)
T 2z80_A           73 QRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL-SSSWFKPLSSLTFLNLLGNPYK-T------------  138 (353)
T ss_dssp             TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSC-CHHHHTTCTTCSEEECTTCCCS-S------------
T ss_pred             ccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcC-CHhHhCCCccCCEEECCCCCCc-c------------
Confidence            344555555555544332  22344455555555555444321 1122344455555555443210 0            


Q ss_pred             Eeccccc-eeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeehhhcccCCCCCCccccc
Q 014150          222 IGGVFDD-VTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVD  300 (430)
Q Consensus       222 l~~~~~~-~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  300 (430)
                          ... ..+..+++|+.|+++.+......          ....+.++++|++|+++.+.+...    .+..+. .+++
T Consensus       139 ----l~~~~~~~~l~~L~~L~l~~n~~~~~~----------~~~~~~~l~~L~~L~l~~n~l~~~----~~~~l~-~l~~  199 (353)
T 2z80_A          139 ----LGETSLFSHLTKLQILRVGNMDTFTKI----------QRKDFAGLTFLEELEIDASDLQSY----EPKSLK-SIQN  199 (353)
T ss_dssp             ----SCSSCSCTTCTTCCEEEEEESSSCCEE----------CTTTTTTCCEEEEEEEEETTCCEE----CTTTTT-TCSE
T ss_pred             ----cCchhhhccCCCCcEEECCCCcccccc----------CHHHccCCCCCCEEECCCCCcCcc----CHHHHh-cccc
Confidence                111 23456777787777765211100          012246677888888877654321    111111 3567


Q ss_pred             cceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCC
Q 014150          301 LNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPE  339 (430)
Q Consensus       301 L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~  339 (430)
                      |++|+++.+...  .+  -..++..+++|+.|+++++.-
T Consensus       200 L~~L~l~~n~l~--~~--~~~~~~~~~~L~~L~L~~n~l  234 (353)
T 2z80_A          200 VSHLILHMKQHI--LL--LEIFVDVTSSVECLELRDTDL  234 (353)
T ss_dssp             EEEEEEECSCST--TH--HHHHHHHTTTEEEEEEESCBC
T ss_pred             CCeecCCCCccc--cc--hhhhhhhcccccEEECCCCcc
Confidence            777777554322  11  223456678888888877654

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.90  E-value=3.1e-09  Score=104.43  Aligned_cols=75  Identities=23%  Similarity=0.278  Sum_probs=40.7

Q ss_pred             CCceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEe
Q 014150          122 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTL  201 (430)
Q Consensus       122 ~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l  201 (430)
                      ++++.+.+..+..  ..++. +..+++|++|++++|.+.....+..+++|+.|++.++.+.+-.   .+..+++|+.|.+
T Consensus        90 ~~L~~L~l~~n~l--~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~l  163 (466)
T 1o6v_A           90 TKLVDILMNNNQI--ADITP-LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDIS---ALSGLTSLQQLSF  163 (466)
T ss_dssp             TTCCEEECCSSCC--CCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCG---GGTTCTTCSEEEE
T ss_pred             ccCCEEECCCCcc--ccChh-hcCCCCCCEEECCCCCCCCChHHcCCCCCCEEECCCCccCCCh---hhccCCcccEeec
Confidence            4566665543321  12333 4556667777776666555333556677777777766654321   1445555555555


Q ss_pred             e
Q 014150          202 M  202 (430)
Q Consensus       202 ~  202 (430)
                      .
T Consensus       164 ~  164 (466)
T 1o6v_A          164 G  164 (466)
T ss_dssp             E
T ss_pred             C
Confidence            4

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.90  E-value=9e-10  Score=102.33  Aligned_cols=194  Identities=16%  Similarity=0.062  Sum_probs=93.6

Q ss_pred             CCceEEEEEecCCCcccCCCcccccCceeEEEEeeeeec--CCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccce
Q 014150          122 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLK--PPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERL  199 (430)
Q Consensus       122 ~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~--~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L  199 (430)
                      +.++.|++..+..-...+|..+..+++|++|+|++|.+.  .|..+.++++|++|+|+++.+.+. +...+..+++|++|
T Consensus        76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L  154 (313)
T 1ogq_A           76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT-LPPSISSLPNLVGI  154 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESC-CCGGGGGCTTCCEE
T ss_pred             CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCc-CChHHhcCCCCCeE
Confidence            566666665211111245666666677777777776654  244456677777777777666532 23335566777777


Q ss_pred             EeeccCCceEEE--E-eC-CCcceEEEecccc----ceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCC
Q 014150          200 TLMNFDGFTHLN--I-DA-PNLQFFDIGGVFD----DVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPH  271 (430)
Q Consensus       200 ~l~~c~~~~~l~--i-~~-p~L~~L~l~~~~~----~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  271 (430)
                      .+.++.-...+.  + .. ++|+.|.+.++.-    ...+..++ |+.|+++.+.....           ....+..+++
T Consensus       155 ~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~-----------~~~~~~~l~~  222 (313)
T 1ogq_A          155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGD-----------ASVLFGSDKN  222 (313)
T ss_dssp             ECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEEC-----------CGGGCCTTSC
T ss_pred             ECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCc-----------CCHHHhcCCC
Confidence            776653211110  0 11 2566666554211    11223333 55555544322110           1122455666


Q ss_pred             ccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecC
Q 014150          272 IRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARP  338 (430)
Q Consensus       272 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~  338 (430)
                      |+.|+++.+.+......     + ..+++|++|+++.+....    .++..+..+++|+.|+++++.
T Consensus       223 L~~L~L~~N~l~~~~~~-----~-~~l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~Ls~N~  279 (313)
T 1ogq_A          223 TQKIHLAKNSLAFDLGK-----V-GLSKNLNGLDLRNNRIYG----TLPQGLTQLKFLHSLNVSFNN  279 (313)
T ss_dssp             CSEEECCSSEECCBGGG-----C-CCCTTCCEEECCSSCCEE----CCCGGGGGCTTCCEEECCSSE
T ss_pred             CCEEECCCCceeeecCc-----c-cccCCCCEEECcCCcccC----cCChHHhcCcCCCEEECcCCc
Confidence            66666665544311000     1 123456666663322110    122334556666666666543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.89  E-value=2e-09  Score=105.71  Aligned_cols=142  Identities=14%  Similarity=0.132  Sum_probs=87.1

Q ss_pred             hCCceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceE
Q 014150          121 RSCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLT  200 (430)
Q Consensus       121 ~~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~  200 (430)
                      .++++.|++..+..  ..++. +..+++|++|++++|.+.....+.++++|++|+|.++.+.+-.  . +..+++|++|.
T Consensus        67 l~~L~~L~Ls~n~l--~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~--~-~~~l~~L~~L~  140 (466)
T 1o6v_A           67 LNNLTQINFSNNQL--TDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDID--P-LKNLTNLNRLE  140 (466)
T ss_dssp             CTTCCEEECCSSCC--CCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG--G-GTTCTTCSEEE
T ss_pred             hcCCCEEECCCCcc--CCchh-hhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCCh--H-HcCCCCCCEEE
Confidence            36788887764432  23444 6677889999998887766444778889999999888765432  1 67888999998


Q ss_pred             eeccCCceEEE--EeCCCcceEEEeccccc-eeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEE
Q 014150          201 LMNFDGFTHLN--IDAPNLQFFDIGGVFDD-VTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEI  277 (430)
Q Consensus       201 l~~c~~~~~l~--i~~p~L~~L~l~~~~~~-~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l  277 (430)
                      +.++.- ..+.  -..++|+.|.+.+.... ..+.++++|+.|+++.+.....             ..+..+++|++|.+
T Consensus       141 l~~n~l-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-------------~~l~~l~~L~~L~l  206 (466)
T 1o6v_A          141 LSSNTI-SDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI-------------SVLAKLTNLESLIA  206 (466)
T ss_dssp             EEEEEE-CCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC-------------GGGGGCTTCSEEEC
T ss_pred             CCCCcc-CCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC-------------hhhccCCCCCEEEe
Confidence            887631 1110  12367777777543221 1255677777777765432110             11455566666666


Q ss_pred             eeeee
Q 014150          278 QSYFL  282 (430)
Q Consensus       278 ~~~~~  282 (430)
                      +++.+
T Consensus       207 ~~n~l  211 (466)
T 1o6v_A          207 TNNQI  211 (466)
T ss_dssp             CSSCC
T ss_pred             cCCcc
Confidence            65543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.86  E-value=4.4e-10  Score=110.99  Aligned_cols=209  Identities=13%  Similarity=0.054  Sum_probs=137.0

Q ss_pred             CceEEEEEecCCCcccCC-CcccccCceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEe
Q 014150          123 CVKEFILEIWKGQRYKVP-SSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTL  201 (430)
Q Consensus       123 ~l~~l~l~~~~~~~~~lp-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l  201 (430)
                      +++.|++..+..  ..++ ..+..+++|++|+|++|.+.....+..+++|+.|+|+++.+++-      ..+++|+.|.+
T Consensus        35 ~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l------~~~~~L~~L~L  106 (487)
T 3oja_A           35 NVKELDLSGNPL--SQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQEL------LVGPSIETLHA  106 (487)
T ss_dssp             GCCEEECCSSCC--CCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEE------EECTTCCEEEC
T ss_pred             CccEEEeeCCcC--CCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCC------CCCCCcCEEEC
Confidence            688887765432  2343 45667899999999999876533478899999999999987642      13489999999


Q ss_pred             eccCCceEEEEeCCCcceEEEeccc----cceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEE
Q 014150          202 MNFDGFTHLNIDAPNLQFFDIGGVF----DDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEI  277 (430)
Q Consensus       202 ~~c~~~~~l~i~~p~L~~L~l~~~~----~~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l  277 (430)
                      .++.-.....-..++|+.|.+.++.    ....+..+++|+.|+++.+....          .....+...+++|++|+|
T Consensus       107 ~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~----------~~~~~l~~~l~~L~~L~L  176 (487)
T 3oja_A          107 ANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT----------VNFAELAASSDTLEHLNL  176 (487)
T ss_dssp             CSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCE----------EEGGGGGGGTTTCCEEEC
T ss_pred             cCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCC----------cChHHHhhhCCcccEEec
Confidence            9875433223345889999998642    23356678999999887543221          111233457899999999


Q ss_pred             eeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCCCCcccccccceecccccc
Q 014150          278 QSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNFWEVDHWTS  357 (430)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~w~~~~~~~  357 (430)
                      +++.+.....      .. .+++|+.|+++.+....     ++.-+..+++|+.|+++++.-..        . +... .
T Consensus       177 s~N~l~~~~~------~~-~l~~L~~L~Ls~N~l~~-----~~~~~~~l~~L~~L~Ls~N~l~~--------l-p~~l-~  234 (487)
T 3oja_A          177 QYNFIYDVKG------QV-VFAKLKTLDLSSNKLAF-----MGPEFQSAAGVTWISLRNNKLVL--------I-EKAL-R  234 (487)
T ss_dssp             TTSCCCEEEC------CC-CCTTCCEEECCSSCCCE-----ECGGGGGGTTCSEEECTTSCCCE--------E-CTTC-C
T ss_pred             CCCccccccc------cc-cCCCCCEEECCCCCCCC-----CCHhHcCCCCccEEEecCCcCcc--------c-chhh-c
Confidence            9887653311      11 36789999995543221     22236788999999999876431        0 0001 1


Q ss_pred             cccCceEEEEEeee
Q 014150          358 LFSQLRMVKIVGIS  371 (430)
Q Consensus       358 ~~~~L~~v~i~~~~  371 (430)
                      .+++|+.+.+.+-.
T Consensus       235 ~l~~L~~L~l~~N~  248 (487)
T 3oja_A          235 FSQNLEHFDLRGNG  248 (487)
T ss_dssp             CCTTCCEEECTTCC
T ss_pred             cCCCCCEEEcCCCC
Confidence            34677787776543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.85  E-value=1.6e-09  Score=99.19  Aligned_cols=58  Identities=21%  Similarity=0.188  Sum_probs=31.6

Q ss_pred             CceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccC
Q 014150          147 QNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFD  205 (430)
Q Consensus       147 ~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~  205 (430)
                      ++|++|+++++.+..  +..+..+++|++|+|.++.+..- ....+..+++|++|.+.++.
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~   91 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI-DAAAFTGLALLEQLDLSDNA   91 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSCT
T ss_pred             CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCcccee-CHhhcCCccCCCEEeCCCCC
Confidence            456666666665543  23455666666666666654322 12234456666666666554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.85  E-value=3.5e-10  Score=110.75  Aligned_cols=192  Identities=18%  Similarity=0.162  Sum_probs=97.6

Q ss_pred             CCceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccce
Q 014150          122 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERL  199 (430)
Q Consensus       122 ~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L  199 (430)
                      .+++.|++...... ...|..+..+++|+.|+|++|.+..  +..|.++++|++|+|.++.+..- ....+..+++|++|
T Consensus        75 ~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L  152 (452)
T 3zyi_A           75 SNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVI-PSGAFEYLSKLREL  152 (452)
T ss_dssp             TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBC-CTTTSSSCTTCCEE
T ss_pred             CCccEEECcCCcCc-eECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCcc-ChhhhcccCCCCEE
Confidence            45666665433221 1123344556777777777766543  34566677777777777765422 12335567777777


Q ss_pred             EeeccCCceEEEE----eCCCcceEEEeccc--c---ceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCC
Q 014150          200 TLMNFDGFTHLNI----DAPNLQFFDIGGVF--D---DVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLP  270 (430)
Q Consensus       200 ~l~~c~~~~~l~i----~~p~L~~L~l~~~~--~---~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~  270 (430)
                      .+.++. +..+.-    ..++|+.|++.+..  .   ...+..+++|+.|+++.+.....         +    .+..++
T Consensus       153 ~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~---------~----~~~~l~  218 (452)
T 3zyi_A          153 WLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM---------P----NLTPLV  218 (452)
T ss_dssp             ECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC---------C----CCTTCT
T ss_pred             ECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc---------c----cccccc
Confidence            777653 222211    23566666665411  1   11244566666666654322111         0    135566


Q ss_pred             CccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecC
Q 014150          271 HIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARP  338 (430)
Q Consensus       271 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~  338 (430)
                      +|+.|+|+++.+......    .+. .+++|+.|+++.+.....    ....+..+++|+.|+|+++.
T Consensus       219 ~L~~L~Ls~N~l~~~~~~----~~~-~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~N~  277 (452)
T 3zyi_A          219 GLEELEMSGNHFPEIRPG----SFH-GLSSLKKLWVMNSQVSLI----ERNAFDGLASLVELNLAHNN  277 (452)
T ss_dssp             TCCEEECTTSCCSEECGG----GGT-TCTTCCEEECTTSCCCEE----CTTTTTTCTTCCEEECCSSC
T ss_pred             cccEEECcCCcCcccCcc----ccc-CccCCCEEEeCCCcCceE----CHHHhcCCCCCCEEECCCCc
Confidence            777777766654322111    011 345666666632211110    11235666777777777654

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=98.85  E-value=1.8e-09  Score=71.32  Aligned_cols=39  Identities=23%  Similarity=0.271  Sum_probs=33.4

Q ss_pred             CCcccCCCcHHHHHHHHcCCCchhhhhhhhhhhhhHhhc
Q 014150           16 ELDRLSSLPAHVIDQILSQLPIRDAVRTSVLSKKWRYKW   54 (430)
Q Consensus        16 ~~d~is~LPdelL~~Ils~L~~~d~~r~s~vskrWr~lw   54 (430)
                      ..+.++.||+|++.+||++|+.+|+++++.|||+|+.+.
T Consensus         5 ~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~   43 (53)
T 1fs1_A            5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLA   43 (53)
T ss_dssp             ----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHH
T ss_pred             CCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            345689999999999999999999999999999999864

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.84  E-value=3.4e-10  Score=110.84  Aligned_cols=112  Identities=10%  Similarity=0.088  Sum_probs=60.9

Q ss_pred             hccCCCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCCCCcccc
Q 014150          266 FVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGV  345 (430)
Q Consensus       266 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~  345 (430)
                      +..+++|++|+++.+.+....    +..+. .+++|+.|+++.+.....    .+..+..+++|+.|+++++.-..    
T Consensus       295 ~~~l~~L~~L~Ls~n~l~~~~----~~~~~-~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~----  361 (455)
T 3v47_A          295 FSHFTDLEQLTLAQNEINKID----DNAFW-GLTHLLKLNLSQNFLGSI----DSRMFENLDKLEVLDLSYNHIRA----  361 (455)
T ss_dssp             TTTCTTCCEEECTTSCCCEEC----TTTTT-TCTTCCEEECCSSCCCEE----CGGGGTTCTTCCEEECCSSCCCE----
T ss_pred             cccCCCCCEEECCCCcccccC----hhHhc-CcccCCEEECCCCccCCc----ChhHhcCcccCCEEECCCCcccc----
Confidence            456667777777666543211    11111 356777777754322211    12346777888888887765321    


Q ss_pred             cccceecccccccccCceEEEEEeeecCccHHHHHHHHHccCCCcceEEEeecC
Q 014150          346 LTNFWEVDHWTSLFSQLRMVKIVGISGIRSELEFIKFVLSNSPVLETMTIKPAS  399 (430)
Q Consensus       346 ~~~~w~~~~~~~~~~~L~~v~i~~~~~~~~e~~~~~~il~~~~~L~~l~i~~~~  399 (430)
                          ...... ..+++|+.+.+.+-.-.    .+....+.+.++|+.+.+..++
T Consensus       362 ----~~~~~~-~~l~~L~~L~L~~N~l~----~~~~~~~~~l~~L~~L~l~~N~  406 (455)
T 3v47_A          362 ----LGDQSF-LGLPNLKELALDTNQLK----SVPDGIFDRLTSLQKIWLHTNP  406 (455)
T ss_dssp             ----ECTTTT-TTCTTCCEEECCSSCCS----CCCTTTTTTCTTCCEEECCSSC
T ss_pred             ----cChhhc-cccccccEEECCCCccc----cCCHhHhccCCcccEEEccCCC
Confidence                000001 13577888887753211    1112245778899999998766

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.84  E-value=1e-09  Score=102.13  Aligned_cols=244  Identities=13%  Similarity=0.051  Sum_probs=154.0

Q ss_pred             chHHHHHHHHH--hCCceEEEEEecCCCcccCC-CcccccCceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhH
Q 014150          110 SDIDRWILYMS--RSCVKEFILEIWKGQRYKVP-SSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVF  186 (430)
Q Consensus       110 ~~v~~wl~~~~--~~~l~~l~l~~~~~~~~~lp-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l  186 (430)
                      ..+...+....  .+++++|++.....  ..++ ..+..+++|++|+|++|.+.....+..+++|++|+|+++.+.+-  
T Consensus        20 ~~l~~~~~~~~~~~~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l--   95 (317)
T 3o53_A           20 SSLKQALASLRQSAWNVKELDLSGNPL--SQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQEL--   95 (317)
T ss_dssp             TTHHHHHHHHHTTGGGCSEEECTTSCC--CCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEE--
T ss_pred             cchhhhHHHHhccCCCCCEEECcCCcc--CcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCccccc--
Confidence            44444444333  24788887754432  2333 34567899999999999876533478899999999999987642  


Q ss_pred             HHHhhcCccccceEeeccCCceEEEEeCCCcceEEEeccc----cceeeccCCCceEEEEEEEeeccccccCCCCCcchH
Q 014150          187 ENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDIGGVF----DDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKL  262 (430)
Q Consensus       187 ~~l~s~cp~Le~L~l~~c~~~~~l~i~~p~L~~L~l~~~~----~~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~  262 (430)
                          ..++.|+.|.+.++.-.....-..++|+.|.+.++.    ....+..+++|+.|+++.+....          ...
T Consensus        96 ----~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~----------~~~  161 (317)
T 3o53_A           96 ----LVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT----------VNF  161 (317)
T ss_dssp             ----EECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCE----------EEG
T ss_pred             ----cCCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCc----------ccH
Confidence                245899999999875433223345889999998742    23356678999999987543221          111


Q ss_pred             HHHhccCCCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCCCCc
Q 014150          263 LRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETG  342 (430)
Q Consensus       263 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~  342 (430)
                      ..+...+++|++|+++.+.+..+..      .. .+++|+.|+++.+....     ++.-+..+++|+.|+++++.-.. 
T Consensus       162 ~~~~~~l~~L~~L~L~~N~l~~~~~------~~-~l~~L~~L~Ls~N~l~~-----l~~~~~~l~~L~~L~L~~N~l~~-  228 (317)
T 3o53_A          162 AELAASSDTLEHLNLQYNFIYDVKG------QV-VFAKLKTLDLSSNKLAF-----MGPEFQSAAGVTWISLRNNKLVL-  228 (317)
T ss_dssp             GGGGGGTTTCCEEECTTSCCCEEEC------CC-CCTTCCEEECCSSCCCE-----ECGGGGGGTTCSEEECTTSCCCE-
T ss_pred             HHHhhccCcCCEEECCCCcCccccc------cc-ccccCCEEECCCCcCCc-----chhhhcccCcccEEECcCCcccc-
Confidence            2334578999999999887654311      11 36789999995543221     22236778999999999875431 


Q ss_pred             ccccccceecccccccccCceEEEEEeeecCccHHHHHHHHHccCCCcceEEEe
Q 014150          343 IGVLTNFWEVDHWTSLFSQLRMVKIVGISGIRSELEFIKFVLSNSPVLETMTIK  396 (430)
Q Consensus       343 ~~~~~~~w~~~~~~~~~~~L~~v~i~~~~~~~~e~~~~~~il~~~~~L~~l~i~  396 (430)
                             . +... ..+++|+.+.+.+-...+.   .....+.+.+.|+.+.+.
T Consensus       229 -------l-~~~~-~~l~~L~~L~l~~N~~~~~---~~~~~~~~~~~L~~l~l~  270 (317)
T 3o53_A          229 -------I-EKAL-RFSQNLEHFDLRGNGFHCG---TLRDFFSKNQRVQTVAKQ  270 (317)
T ss_dssp             -------E-CTTC-CCCTTCCEEECTTCCCBHH---HHHHHHHTCHHHHHHHHH
T ss_pred             -------h-hhHh-hcCCCCCEEEccCCCccCc---CHHHHHhccccceEEECC
Confidence                   0 0001 1356788888775443211   233445566667766655

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.84  E-value=1e-09  Score=102.78  Aligned_cols=169  Identities=18%  Similarity=0.111  Sum_probs=85.2

Q ss_pred             CceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEEE-eCCCcceEEEe
Q 014150          147 QNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNI-DAPNLQFFDIG  223 (430)
Q Consensus       147 ~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~i-~~p~L~~L~l~  223 (430)
                      ++|+.|+|+++.+..  +..+.++++|++|+|.++.+..- ....+..+++|++|.+.++.- ..+.. ..++|+.|.+.
T Consensus        52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l-~~l~~~~~~~L~~L~l~  129 (330)
T 1xku_A           52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI-SPGAFAPLVKLERLYLSKNQL-KELPEKMPKTLQELRVH  129 (330)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSSCC-SBCCSSCCTTCCEEECC
T ss_pred             CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCee-CHHHhcCCCCCCEEECCCCcC-CccChhhcccccEEECC
Confidence            567777777776654  22466677777777777665432 123345677777777766531 11110 12567777766


Q ss_pred             ccc-c---ceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeehhhcccCCCCCCcccc
Q 014150          224 GVF-D---DVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCV  299 (430)
Q Consensus       224 ~~~-~---~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  299 (430)
                      ++. .   ...+..+++|+.++++.+....         .......+.++++|++|.++.+.+..+..     .   .++
T Consensus       130 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---------~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-----~---~~~  192 (330)
T 1xku_A          130 ENEITKVRKSVFNGLNQMIVVELGTNPLKS---------SGIENGAFQGMKKLSYIRIADTNITTIPQ-----G---LPP  192 (330)
T ss_dssp             SSCCCBBCHHHHTTCTTCCEEECCSSCCCG---------GGBCTTGGGGCTTCCEEECCSSCCCSCCS-----S---CCT
T ss_pred             CCcccccCHhHhcCCccccEEECCCCcCCc---------cCcChhhccCCCCcCEEECCCCccccCCc-----c---ccc
Confidence            532 1   1124566777777765433210         00111234566777777776655432111     1   124


Q ss_pred             ccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecC
Q 014150          300 DLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARP  338 (430)
Q Consensus       300 ~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~  338 (430)
                      +|++|+++.+.....    .+..+..+++|+.|+++++.
T Consensus       193 ~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~  227 (330)
T 1xku_A          193 SLTELHLDGNKITKV----DAASLKGLNNLAKLGLSFNS  227 (330)
T ss_dssp             TCSEEECTTSCCCEE----CTGGGTTCTTCCEEECCSSC
T ss_pred             cCCEEECCCCcCCcc----CHHHhcCCCCCCEEECCCCc
Confidence            566666532211110    11234556666666665543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.83  E-value=3.6e-08  Score=98.84  Aligned_cols=144  Identities=14%  Similarity=0.064  Sum_probs=78.2

Q ss_pred             eeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEe
Q 014150          230 TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRIN  309 (430)
Q Consensus       230 ~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  309 (430)
                      .+.++++|+.|+++.+......          ....+.++++|++|+++.+.+...    .+..+. .+++|++|++...
T Consensus       118 ~~~~l~~L~~L~L~~n~~~~~~----------~~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~-~l~~L~~L~l~~n  182 (549)
T 2z81_A          118 LFPNLTNLQTLRIGNVETFSEI----------RRIDFAGLTSLNELEIKALSLRNY----QSQSLK-SIRDIHHLTLHLS  182 (549)
T ss_dssp             SCTTCTTCCEEEEEESSSCCEE----------CTTTTTTCCEEEEEEEEETTCCEE----CTTTTT-TCSEEEEEEEECS
T ss_pred             hhhccCCccEEECCCCcccccc----------CHhhhhcccccCeeeccCCccccc----Chhhhh-ccccCceEecccC
Confidence            3567888888888765421110          012257788999999987765421    111222 4567888887654


Q ss_pred             eCChhhHHHHHHHHhcCCCccEEEEeecCCCCcccccccceecccccccccCceEEEEEeeecCccHHHHHHHHHccCCC
Q 014150          310 FNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNFWEVDHWTSLFSQLRMVKIVGISGIRSELEFIKFVLSNSPV  389 (430)
Q Consensus       310 ~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~w~~~~~~~~~~~L~~v~i~~~~~~~~e~~~~~~il~~~~~  389 (430)
                      ....  +  -..++..+++|+.|+++++.-.+....      .........+|+.+.+.+..-......-+...+.+.+.
T Consensus       183 ~~~~--~--~~~~~~~l~~L~~L~L~~n~l~~~~~~------~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~  252 (549)
T 2z81_A          183 ESAF--L--LEIFADILSSVRYLELRDTNLARFQFS------PLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILE  252 (549)
T ss_dssp             BSTT--H--HHHHHHSTTTBSEEEEESCBCTTCCCC------CCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTT
T ss_pred             cccc--c--chhhHhhcccccEEEccCCcccccccc------ccchhhhhhcccceeccccccchhHHHHHHHHhhhhcc
Confidence            3321  1  223456789999999988754311000      00011135677777776543322222223334456666


Q ss_pred             cceEEEeec
Q 014150          390 LETMTIKPA  398 (430)
Q Consensus       390 L~~l~i~~~  398 (430)
                      |+.+.+..+
T Consensus       253 L~~l~l~~~  261 (549)
T 2z81_A          253 LSEVEFDDC  261 (549)
T ss_dssp             CCEEEEESC
T ss_pred             ccccccccc
Confidence            666666543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.83  E-value=6.1e-10  Score=108.66  Aligned_cols=191  Identities=16%  Similarity=0.149  Sum_probs=95.0

Q ss_pred             CCceEEEEEecCCCcccCC-CcccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccc
Q 014150          122 SCVKEFILEIWKGQRYKVP-SSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLER  198 (430)
Q Consensus       122 ~~l~~l~l~~~~~~~~~lp-~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~  198 (430)
                      .+++.|++.....  ..++ ..+..+++|+.|+|++|.+..  +..|.++++|++|+|.++.+..- ....+..+++|++
T Consensus        64 ~~l~~L~L~~n~i--~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~  140 (440)
T 3zyj_A           64 TNTRLLNLHENQI--QIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTI-PNGAFVYLSKLKE  140 (440)
T ss_dssp             TTCSEEECCSCCC--CEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSC-CTTTSCSCSSCCE
T ss_pred             CCCcEEEccCCcC--CeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCee-CHhHhhccccCce
Confidence            4555555543322  1222 334456667777777665543  23455667777777766665422 1223455667777


Q ss_pred             eEeeccCCceEEEE----eCCCcceEEEeccc-----cceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccC
Q 014150          199 LTLMNFDGFTHLNI----DAPNLQFFDIGGVF-----DDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHL  269 (430)
Q Consensus       199 L~l~~c~~~~~l~i----~~p~L~~L~l~~~~-----~~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~  269 (430)
                      |.+.++. +..+.-    ..++|+.|++.+..     ....+.++++|+.|+++.+.....         +    .+..+
T Consensus       141 L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~---------~----~~~~l  206 (440)
T 3zyj_A          141 LWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI---------P----NLTPL  206 (440)
T ss_dssp             EECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC---------C----CCTTC
T ss_pred             eeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc---------c----ccCCC
Confidence            7776543 222111    13566666665421     111244566666666654322111         1    14556


Q ss_pred             CCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecC
Q 014150          270 PHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARP  338 (430)
Q Consensus       270 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~  338 (430)
                      ++|+.|+|+++.+..+..    ..+. .+++|+.|++..+.....    ....+..+++|+.|+|+++.
T Consensus       207 ~~L~~L~Ls~N~l~~~~~----~~~~-~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~N~  266 (440)
T 3zyj_A          207 IKLDELDLSGNHLSAIRP----GSFQ-GLMHLQKLWMIQSQIQVI----ERNAFDNLQSLVEINLAHNN  266 (440)
T ss_dssp             SSCCEEECTTSCCCEECT----TTTT-TCTTCCEEECTTCCCCEE----CTTSSTTCTTCCEEECTTSC
T ss_pred             cccCEEECCCCccCccCh----hhhc-cCccCCEEECCCCceeEE----ChhhhcCCCCCCEEECCCCC
Confidence            677777776665432211    1111 355667666632211110    11235567777777777654

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.83  E-value=2.2e-10  Score=116.44  Aligned_cols=59  Identities=25%  Similarity=0.281  Sum_probs=28.1

Q ss_pred             ccCceeEEEEeeeeecC-CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeecc
Q 014150          145 LCQNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNF  204 (430)
Q Consensus       145 ~~~~L~~L~L~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c  204 (430)
                      .+++|+.|++++|.+.. |..+..+++|++|++.++.+... ....+..+++|+.|.+.++
T Consensus       276 ~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n  335 (606)
T 3t6q_A          276 CFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENL-CQISASNFPSLTHLSIKGN  335 (606)
T ss_dssp             TCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBG-GGGCGGGCTTCSEEECCSC
T ss_pred             cccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcC-chhhhhccCcCCEEECCCC
Confidence            44555555555554443 33444555555555555554322 1122344455555555444

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.83  E-value=1e-09  Score=108.17  Aligned_cols=223  Identities=17%  Similarity=0.116  Sum_probs=106.5

Q ss_pred             cccccCceeEEEEeeeeecC-C-CCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEEE----eCC
Q 014150          142 SLFLCQNLIHLELFNCLLKP-P-STFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNI----DAP  215 (430)
Q Consensus       142 ~~~~~~~L~~L~L~~~~~~~-~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~i----~~p  215 (430)
                      .+..+++|++|+|++|.+.. + ..|.++++|++|+|+++.+... ....+..+++|++|.+.++.- ..+..    ..+
T Consensus        75 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~  152 (477)
T 2id5_A           75 AFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVIL-LDYMFQDLYNLKSLEVGDNDL-VYISHRAFSGLN  152 (477)
T ss_dssp             TTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEEECCTTC-CEECTTSSTTCT
T ss_pred             hhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccC-ChhHccccccCCEEECCCCcc-ceeChhhccCCC
Confidence            34445555555555554443 1 2244555555555555544321 122234555555555554321 11110    124


Q ss_pred             CcceEEEeccc-cc---eeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeehhhcccCC
Q 014150          216 NLQFFDIGGVF-DD---VTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVP  291 (430)
Q Consensus       216 ~L~~L~l~~~~-~~---~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  291 (430)
                      +|+.|.+.++. ..   ..+..+++|+.|++..+......           ...+..+++|+.|+++.+....    ..+
T Consensus       153 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~-----------~~~~~~l~~L~~L~l~~~~~~~----~~~  217 (477)
T 2id5_A          153 SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIR-----------DYSFKRLYRLKVLEISHWPYLD----TMT  217 (477)
T ss_dssp             TCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEEC-----------TTCSCSCTTCCEEEEECCTTCC----EEC
T ss_pred             CCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeC-----------hhhcccCcccceeeCCCCcccc----ccC
Confidence            55555555421 11   12345555565555543221110           0123455666666665532210    001


Q ss_pred             CCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCCCCcccccccceecccccccccCceEEEEEeee
Q 014150          292 SRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNFWEVDHWTSLFSQLRMVKIVGIS  371 (430)
Q Consensus       292 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~w~~~~~~~~~~~L~~v~i~~~~  371 (430)
                      .... ...+|+.|+++.+.....    -...+..+++|+.|+|+++.-...        ... .-..+.+|+.+.+.+-.
T Consensus       218 ~~~~-~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~--------~~~-~~~~l~~L~~L~L~~n~  283 (477)
T 2id5_A          218 PNCL-YGLNLTSLSITHCNLTAV----PYLAVRHLVYLRFLNLSYNPISTI--------EGS-MLHELLRLQEIQLVGGQ  283 (477)
T ss_dssp             TTTT-TTCCCSEEEEESSCCCSC----CHHHHTTCTTCCEEECCSSCCCEE--------CTT-SCTTCTTCCEEECCSSC
T ss_pred             cccc-cCccccEEECcCCccccc----CHHHhcCccccCeeECCCCcCCcc--------Chh-hccccccCCEEECCCCc
Confidence            0111 123677777754432211    113568889999999988753310        000 11145778888877532


Q ss_pred             cCccHHHHHHHHHccCCCcceEEEeecC
Q 014150          372 GIRSELEFIKFVLSNSPVLETMTIKPAS  399 (430)
Q Consensus       372 ~~~~e~~~~~~il~~~~~L~~l~i~~~~  399 (430)
                      -..    +....+.+.++|+.+.+..+.
T Consensus       284 l~~----~~~~~~~~l~~L~~L~L~~N~  307 (477)
T 2id5_A          284 LAV----VEPYAFRGLNYLRVLNVSGNQ  307 (477)
T ss_dssp             CSE----ECTTTBTTCTTCCEEECCSSC
T ss_pred             cce----ECHHHhcCcccCCEEECCCCc
Confidence            111    111235678999999998765

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.83  E-value=1.3e-09  Score=106.60  Aligned_cols=195  Identities=16%  Similarity=0.125  Sum_probs=126.2

Q ss_pred             CCceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccce
Q 014150          122 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERL  199 (430)
Q Consensus       122 ~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L  199 (430)
                      .+++.|++....... ..+..+..+++|++|+|++|.+..  +..|..+++|+.|+|+++.+..- ....+..+++|+.|
T Consensus        99 ~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L  176 (452)
T 3zyi_A           99 HHLEVLQLGRNSIRQ-IEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESI-PSYAFNRVPSLMRL  176 (452)
T ss_dssp             TTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEE-CTTTTTTCTTCCEE
T ss_pred             CCCCEEECCCCccCC-cChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCccee-CHhHHhcCCcccEE
Confidence            678888886543221 123445678999999999998765  34477899999999999987532 13346789999999


Q ss_pred             EeeccCCceEEEE----eCCCcceEEEeccc-cc-eeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCcc
Q 014150          200 TLMNFDGFTHLNI----DAPNLQFFDIGGVF-DD-VTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIR  273 (430)
Q Consensus       200 ~l~~c~~~~~l~i----~~p~L~~L~l~~~~-~~-~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~  273 (430)
                      .+.+|..+..+..    ..++|+.|++.++. .. -.+..+++|+.|+++.+.....           ....+.++++|+
T Consensus       177 ~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~-----------~~~~~~~l~~L~  245 (452)
T 3zyi_A          177 DLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEI-----------RPGSFHGLSSLK  245 (452)
T ss_dssp             ECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEE-----------CGGGGTTCTTCC
T ss_pred             eCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCccc-----------CcccccCccCCC
Confidence            9998877665532    24788888887642 11 1356778888888865432211           123357788888


Q ss_pred             EEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecC
Q 014150          274 RLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARP  338 (430)
Q Consensus       274 ~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~  338 (430)
                      .|.++++.+......    .+. .+++|+.|+++.+.....    ....+..+++|+.|+|.+++
T Consensus       246 ~L~L~~n~l~~~~~~----~~~-~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          246 KLWVMNSQVSLIERN----AFD-GLASLVELNLAHNNLSSL----PHDLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             EEECTTSCCCEECTT----TTT-TCTTCCEEECCSSCCSCC----CTTSSTTCTTCCEEECCSSC
T ss_pred             EEEeCCCcCceECHH----Hhc-CCCCCCEEECCCCcCCcc----ChHHhccccCCCEEEccCCC
Confidence            888887765432111    111 456788887744322111    11345677888888887765

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.81  E-value=1.2e-09  Score=100.05  Aligned_cols=194  Identities=21%  Similarity=0.150  Sum_probs=109.6

Q ss_pred             hCCceEEEEEecCCCcccCC-CcccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEE-echhhHHHHhhcCccc
Q 014150          121 RSCVKEFILEIWKGQRYKVP-SSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHIT-LSQDVFENLISSSPTL  196 (430)
Q Consensus       121 ~~~l~~l~l~~~~~~~~~lp-~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~-~~~~~l~~l~s~cp~L  196 (430)
                      .++++++++.....  ..++ ..+..+++|++|+++++.+..  +..+.++++|++|+|.++. +..- ....+..+++|
T Consensus        31 ~~~l~~L~l~~n~i--~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~-~~~~~~~l~~L  107 (285)
T 1ozn_A           31 PAASQRIFLHGNRI--SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV-DPATFHGLGRL  107 (285)
T ss_dssp             CTTCSEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCC-CTTTTTTCTTC
T ss_pred             CCCceEEEeeCCcC--CccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcccc-CHHHhcCCcCC
Confidence            35777777754322  2334 345667899999999887654  4567789999999999886 4432 13346678899


Q ss_pred             cceEeeccCCceEEE---E-eCCCcceEEEeccc-cc---eeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhcc
Q 014150          197 ERLTLMNFDGFTHLN---I-DAPNLQFFDIGGVF-DD---VTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVH  268 (430)
Q Consensus       197 e~L~l~~c~~~~~l~---i-~~p~L~~L~l~~~~-~~---~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~  268 (430)
                      ++|.+.++.-. .+.   + ..++|+.|.+.++. ..   ..+..+++|+.|+++.+......           ...+..
T Consensus       108 ~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-----------~~~~~~  175 (285)
T 1ozn_A          108 HTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP-----------ERAFRG  175 (285)
T ss_dssp             CEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC-----------TTTTTT
T ss_pred             CEEECCCCcCC-EECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC-----------HHHhcC
Confidence            99999876422 111   1 13566666666532 11   12455667777766543221100           112455


Q ss_pred             CCCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecC
Q 014150          269 LPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARP  338 (430)
Q Consensus       269 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~  338 (430)
                      +++|++|+++++.+....    +..+. .+++|+.|+++.+.....    ....+..+++|+.|++.+++
T Consensus       176 l~~L~~L~l~~n~l~~~~----~~~~~-~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~N~  236 (285)
T 1ozn_A          176 LHSLDRLLLHQNRVAHVH----PHAFR-DLGRLMTLYLFANNLSAL----PTEALAPLRALQYLRLNDNP  236 (285)
T ss_dssp             CTTCCEEECCSSCCCEEC----TTTTT-TCTTCCEEECCSSCCSCC----CHHHHTTCTTCCEEECCSSC
T ss_pred             ccccCEEECCCCcccccC----HhHcc-CcccccEeeCCCCcCCcC----CHHHcccCcccCEEeccCCC
Confidence            677777777666543211    11111 345667666643322111    12345667777777776654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.81  E-value=1.6e-10  Score=110.76  Aligned_cols=211  Identities=14%  Similarity=0.118  Sum_probs=112.4

Q ss_pred             CCceEEEEEecCCCcc--cCCCcc-------cccCceeEEEEeeeeecCC------CCCCCCCCcceEEeeeEEechh--
Q 014150          122 SCVKEFILEIWKGQRY--KVPSSL-------FLCQNLIHLELFNCLLKPP------STFKGFRNLKSLDLQHITLSQD--  184 (430)
Q Consensus       122 ~~l~~l~l~~~~~~~~--~lp~~~-------~~~~~L~~L~L~~~~~~~~------~~~~~~~~L~~L~L~~~~~~~~--  184 (430)
                      ++++.|.+..+....+  .+|..+       ..+++|++|+|++|.+...      ..+..+++|++|+|.+|.+++.  
T Consensus        60 ~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~  139 (386)
T 2ca6_A           60 KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAG  139 (386)
T ss_dssp             TTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHH
T ss_pred             CCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHH
Confidence            5777777754322111  233332       5678899999988877652      1345688899999988887643  


Q ss_pred             -hHHHHhhcC---------ccccceEeeccCCc-eEEE------EeCCCcceEEEeccccc------e---eeccCCCce
Q 014150          185 -VFENLISSS---------PTLERLTLMNFDGF-THLN------IDAPNLQFFDIGGVFDD------V---TFENTFHLA  238 (430)
Q Consensus       185 -~l~~l~s~c---------p~Le~L~l~~c~~~-~~l~------i~~p~L~~L~l~~~~~~------~---~~~~~p~L~  238 (430)
                       .+...+..+         ++|++|.+.+|.-. ..+.      -..++|+.|.+.++.-.      +   .+..+++|+
T Consensus       140 ~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~  219 (386)
T 2ca6_A          140 AKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELK  219 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCC
T ss_pred             HHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCcc
Confidence             234444445         88888888876421 0000      12456666666553211      0   334566777


Q ss_pred             EEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeehhhcccCCCCCC-ccccccceeEEEEeeCChhhHH
Q 014150          239 LVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLP-RPCVDLNYLSIRINFNDLEENL  317 (430)
Q Consensus       239 ~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~  317 (430)
                      .|+++.+...+.       ....+...+..+++|++|.|+++.+........+..+. ..+++|++|+++.+......+.
T Consensus       220 ~L~Ls~n~l~~~-------g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~  292 (386)
T 2ca6_A          220 VLDLQDNTFTHL-------GSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVR  292 (386)
T ss_dssp             EEECCSSCCHHH-------HHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHH
T ss_pred             EEECcCCCCCcH-------HHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHH
Confidence            776654332100       01223445566677777777666543221100000000 0145677777654443333333


Q ss_pred             HHHHHH-hcCCCccEEEEeecCC
Q 014150          318 AALCLL-RSSPNLQELEMLARPE  339 (430)
Q Consensus       318 ~l~~ll-~~~p~L~~L~l~~~~~  339 (430)
                      .++..+ .++|+|+.|++.++..
T Consensus       293 ~l~~~l~~~l~~L~~L~l~~N~l  315 (386)
T 2ca6_A          293 TLKTVIDEKMPDLLFLELNGNRF  315 (386)
T ss_dssp             HHHHHHHHHCTTCCEEECTTSBS
T ss_pred             HHHHHHHhcCCCceEEEccCCcC
Confidence            444444 5567777777766543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.80  E-value=2.2e-09  Score=105.10  Aligned_cols=103  Identities=16%  Similarity=0.151  Sum_probs=63.1

Q ss_pred             HhccCCCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCCCCccc
Q 014150          265 FFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIG  344 (430)
Q Consensus       265 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~  344 (430)
                      .+.++++|++|+++.+.+......    .+ ..+++|+.|+++.+.....    .+..+..+|+|+.|++.++.-...  
T Consensus       318 ~~~~l~~L~~L~Ls~N~l~~~~~~----~~-~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~--  386 (455)
T 3v47_A          318 AFWGLTHLLKLNLSQNFLGSIDSR----MF-ENLDKLEVLDLSYNHIRAL----GDQSFLGLPNLKELALDTNQLKSV--  386 (455)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECGG----GG-TTCTTCCEEECCSSCCCEE----CTTTTTTCTTCCEEECCSSCCSCC--
T ss_pred             HhcCcccCCEEECCCCccCCcChh----Hh-cCcccCCEEECCCCccccc----ChhhccccccccEEECCCCccccC--
Confidence            367889999999998876432111    11 1467899999965432211    133467899999999999764310  


Q ss_pred             ccccceecccccccccCceEEEEEe--eecCccHHHHHHHHHc
Q 014150          345 VLTNFWEVDHWTSLFSQLRMVKIVG--ISGIRSELEFIKFVLS  385 (430)
Q Consensus       345 ~~~~~w~~~~~~~~~~~L~~v~i~~--~~~~~~e~~~~~~il~  385 (430)
                            ... .-..+++|+.+.+.+  +.+......+....+.
T Consensus       387 ------~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~  422 (455)
T 3v47_A          387 ------PDG-IFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN  422 (455)
T ss_dssp             ------CTT-TTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHH
T ss_pred             ------CHh-HhccCCcccEEEccCCCcccCCCcchHHHHHHH
Confidence                  000 112467899999886  4454554555544443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.79  E-value=5.6e-09  Score=98.31  Aligned_cols=251  Identities=13%  Similarity=0.096  Sum_probs=155.8

Q ss_pred             CceeEEEEEeccCCCcchHHHHHHHHHhCCceEEEEEecCCCcccCCCcccccCceeEEEEeeee-ecCCCCCCCCCCcc
Q 014150           94 GPILKFKLSHRDLLGVSDIDRWILYMSRSCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCL-LKPPSTFKGFRNLK  172 (430)
Q Consensus        94 ~~l~~l~l~~~~~~~~~~v~~wl~~~~~~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~-~~~~~~~~~~~~L~  172 (430)
                      ..++.+.+..........      ....++++++++..+..  ..++. +..+++|+.|++++|. ......+..+++|+
T Consensus        88 ~~L~~L~L~~n~i~~~~~------~~~l~~L~~L~l~~n~i--~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~  158 (347)
T 4fmz_A           88 VKLTNLYIGTNKITDISA------LQNLTNLRELYLNEDNI--SDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLN  158 (347)
T ss_dssp             TTCCEEECCSSCCCCCGG------GTTCTTCSEEECTTSCC--CCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCC
T ss_pred             CcCCEEEccCCcccCchH------HcCCCcCCEEECcCCcc--cCchh-hccCCceeEEECCCCCCcccccchhhCCCCc
Confidence            346777777654333221      12236788888854432  23443 6678999999999984 44445577899999


Q ss_pred             eEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEE--EeCCCcceEEEecccc-ce-eeccCCCceEEEEEEEeec
Q 014150          173 SLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLN--IDAPNLQFFDIGGVFD-DV-TFENTFHLALVSIGLYVNV  248 (430)
Q Consensus       173 ~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~--i~~p~L~~L~l~~~~~-~~-~~~~~p~L~~l~i~~~~~~  248 (430)
                      .|++.++.+.+...   +..++.|++|.+.+|.-. .+.  -..++|+.|.+.++.. .. .+..+++|+.|+++.+...
T Consensus       159 ~L~l~~~~~~~~~~---~~~l~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~  234 (347)
T 4fmz_A          159 YLTVTESKVKDVTP---IANLTDLYSLSLNYNQIE-DISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKIT  234 (347)
T ss_dssp             EEECCSSCCCCCGG---GGGCTTCSEEECTTSCCC-CCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             EEEecCCCcCCchh---hccCCCCCEEEccCCccc-ccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccC
Confidence            99999988754322   678999999999987421 111  1347888888876421 11 2567888999988765432


Q ss_pred             cccccCCCCCcchHHHHhccCCCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCC
Q 014150          249 KNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPN  328 (430)
Q Consensus       249 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~  328 (430)
                      ..         ..    +..+++|++|+++.+.+..+.   .   + ..+++|++|+++.+....     + ..+..+|+
T Consensus       235 ~~---------~~----~~~l~~L~~L~l~~n~l~~~~---~---~-~~l~~L~~L~l~~n~l~~-----~-~~~~~l~~  288 (347)
T 4fmz_A          235 DL---------SP----LANLSQLTWLEIGTNQISDIN---A---V-KDLTKLKMLNVGSNQISD-----I-SVLNNLSQ  288 (347)
T ss_dssp             CC---------GG----GTTCTTCCEEECCSSCCCCCG---G---G-TTCTTCCEEECCSSCCCC-----C-GGGGGCTT
T ss_pred             CC---------cc----hhcCCCCCEEECCCCccCCCh---h---H-hcCCCcCEEEccCCccCC-----C-hhhcCCCC
Confidence            11         11    578889999999887654321   1   1 146688888885443221     1 24678888


Q ss_pred             ccEEEEeecCCCCcccccccceecccccccccCceEEEEEeeecCccHHHHHHHHHccCCCcceEEEeec
Q 014150          329 LQELEMLARPEETGIGVLTNFWEVDHWTSLFSQLRMVKIVGISGIRSELEFIKFVLSNSPVLETMTIKPA  398 (430)
Q Consensus       329 L~~L~l~~~~~~~~~~~~~~~w~~~~~~~~~~~L~~v~i~~~~~~~~e~~~~~~il~~~~~L~~l~i~~~  398 (430)
                      |+.|++.++.-...   .     .. .-..+++|+.+.+.+-.-....    .  +.+.+.|+++.+..+
T Consensus       289 L~~L~L~~n~l~~~---~-----~~-~l~~l~~L~~L~L~~n~l~~~~----~--~~~l~~L~~L~l~~N  343 (347)
T 4fmz_A          289 LNSLFLNNNQLGNE---D-----ME-VIGGLTNLTTLFLSQNHITDIR----P--LASLSKMDSADFANQ  343 (347)
T ss_dssp             CSEEECCSSCCCGG---G-----HH-HHHTCTTCSEEECCSSSCCCCG----G--GGGCTTCSEESSSCC
T ss_pred             CCEEECcCCcCCCc---C-----hh-HhhccccCCEEEccCCcccccc----C--hhhhhccceeehhhh
Confidence            99998888753210   0     00 0113577888887764322111    1  567788888877654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.79  E-value=1.6e-09  Score=105.72  Aligned_cols=194  Identities=16%  Similarity=0.154  Sum_probs=124.1

Q ss_pred             CCceEEEEEecCCCcccCC-CcccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccc
Q 014150          122 SCVKEFILEIWKGQRYKVP-SSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLER  198 (430)
Q Consensus       122 ~~l~~l~l~~~~~~~~~lp-~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~  198 (430)
                      ++++.|++.....  ..++ ..+..+++|++|+|++|.+..  +..+..+++|+.|+|.++.+..- ....+..+++|+.
T Consensus        88 ~~L~~L~Ls~n~i--~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~-~~~~~~~l~~L~~  164 (440)
T 3zyj_A           88 RHLEILQLSRNHI--RTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESI-PSYAFNRIPSLRR  164 (440)
T ss_dssp             SSCCEEECCSSCC--CEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEE-CTTTTTTCTTCCE
T ss_pred             CCCCEEECCCCcC--CccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCccccc-CHHHhhhCcccCE
Confidence            5778887764432  2233 345567899999999998765  23577899999999999886532 1234667899999


Q ss_pred             eEeeccCCceEEEE----eCCCcceEEEeccc-cce-eeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCc
Q 014150          199 LTLMNFDGFTHLNI----DAPNLQFFDIGGVF-DDV-TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHI  272 (430)
Q Consensus       199 L~l~~c~~~~~l~i----~~p~L~~L~l~~~~-~~~-~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L  272 (430)
                      |.+.++..+..+.-    ..++|+.|++.++. ..+ .+..+++|+.|+++.+.....           ....+.++++|
T Consensus       165 L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~-----------~~~~~~~l~~L  233 (440)
T 3zyj_A          165 LDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAI-----------RPGSFQGLMHL  233 (440)
T ss_dssp             EECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEE-----------CTTTTTTCTTC
T ss_pred             eCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCcc-----------ChhhhccCccC
Confidence            99998776654432    24788888887642 111 356778888888865432211           01235678888


Q ss_pred             cEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecC
Q 014150          273 RRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARP  338 (430)
Q Consensus       273 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~  338 (430)
                      ++|.++++.+..+...    .+ ..+++|+.|+++.+.....    -...+..+++|+.|+|.+++
T Consensus       234 ~~L~L~~n~l~~~~~~----~~-~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          234 QKLWMIQSQIQVIERN----AF-DNLQSLVEINLAHNNLTLL----PHDLFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             CEEECTTCCCCEECTT----SS-TTCTTCCEEECTTSCCCCC----CTTTTSSCTTCCEEECCSSC
T ss_pred             CEEECCCCceeEEChh----hh-cCCCCCCEEECCCCCCCcc----ChhHhccccCCCEEEcCCCC
Confidence            8888887765432211    11 1456788888743322111    12345677888888887765

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.78  E-value=1e-09  Score=114.63  Aligned_cols=194  Identities=19%  Similarity=0.123  Sum_probs=113.5

Q ss_pred             CCceEEEEEecCCCcccCCC--cccccCceeEEEEeeeeecC--CCCC-CCCCCcceEEeeeEEechhhHH--HHhhcCc
Q 014150          122 SCVKEFILEIWKGQRYKVPS--SLFLCQNLIHLELFNCLLKP--PSTF-KGFRNLKSLDLQHITLSQDVFE--NLISSSP  194 (430)
Q Consensus       122 ~~l~~l~l~~~~~~~~~lp~--~~~~~~~L~~L~L~~~~~~~--~~~~-~~~~~L~~L~L~~~~~~~~~l~--~l~s~cp  194 (430)
                      +.++.|++..+.. ...+|.  .+..+++|++|+|++|.+..  +..+ .++++|++|+|+++.+.+....  ..+..|+
T Consensus       100 ~~L~~L~Ls~n~l-~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~  178 (768)
T 3rgz_A          100 ASLTSLDLSRNSL-SGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCG  178 (768)
T ss_dssp             TTCCEEECCSSEE-EEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCT
T ss_pred             CCCCEEECCCCcC-CCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCC
Confidence            4667766643221 113555  67778888888888887754  2222 5788899999988887654322  2367889


Q ss_pred             cccceEeeccCCceEEE-EeCCCcceEEEecccc---ceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCC
Q 014150          195 TLERLTLMNFDGFTHLN-IDAPNLQFFDIGGVFD---DVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLP  270 (430)
Q Consensus       195 ~Le~L~l~~c~~~~~l~-i~~p~L~~L~l~~~~~---~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~  270 (430)
                      +|++|.+.++.-..... -..++|+.|++.++.-   ...+.++++|++|+++.+...           ..+...+..++
T Consensus       179 ~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~-----------~~~~~~l~~l~  247 (768)
T 3rgz_A          179 ELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLS-----------GDFSRAISTCT  247 (768)
T ss_dssp             TCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCC-----------SCHHHHTTTCS
T ss_pred             CCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCC-----------CcccHHHhcCC
Confidence            99999988764211111 2357888888876421   112667888888888654321           22344567888


Q ss_pred             CccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHH-HHhcCCCccEEEEeecC
Q 014150          271 HIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALC-LLRSSPNLQELEMLARP  338 (430)
Q Consensus       271 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~-ll~~~p~L~~L~l~~~~  338 (430)
                      +|++|+++.+.+..    ..+. .  .+++|++|++..+....    .++. +...|++|+.|++.++.
T Consensus       248 ~L~~L~Ls~n~l~~----~~~~-~--~l~~L~~L~L~~n~l~~----~ip~~~~~~~~~L~~L~Ls~n~  305 (768)
T 3rgz_A          248 ELKLLNISSNQFVG----PIPP-L--PLKSLQYLSLAENKFTG----EIPDFLSGACDTLTGLDLSGNH  305 (768)
T ss_dssp             SCCEEECCSSCCEE----SCCC-C--CCTTCCEEECCSSEEEE----SCCCCSCTTCTTCSEEECCSSE
T ss_pred             CCCEEECCCCcccC----ccCc-c--ccCCCCEEECcCCccCC----ccCHHHHhhcCcCCEEECcCCc
Confidence            88888888775431    1110 0  35566666663221110    0111 12334666666666543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.78  E-value=2.2e-09  Score=109.09  Aligned_cols=244  Identities=14%  Similarity=0.070  Sum_probs=124.7

Q ss_pred             CceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceE
Q 014150          123 CVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLT  200 (430)
Q Consensus       123 ~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~  200 (430)
                      +++++++....  ...+|..+..+++|++|++++|.+..  +..+..+++|+.|++.++.+........+..+++|++|.
T Consensus       279 ~L~~L~l~~n~--l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~  356 (606)
T 3t6q_A          279 GLQELDLTATH--LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD  356 (606)
T ss_dssp             TCSEEECTTSC--CSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEE
T ss_pred             CCCEEeccCCc--cCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEE
Confidence            44444443222  12566666666777777777776543  335566777777777776544322223355677777777


Q ss_pred             eeccCCceEEEE------eCCCcceEEEeccc-c---ceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCC
Q 014150          201 LMNFDGFTHLNI------DAPNLQFFDIGGVF-D---DVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLP  270 (430)
Q Consensus       201 l~~c~~~~~l~i------~~p~L~~L~l~~~~-~---~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~  270 (430)
                      +.++.-. .+..      ..++|+.|.+.++. .   ...+..+++|+.|+++.+......          ....+..++
T Consensus       357 l~~n~l~-~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~----------~~~~~~~l~  425 (606)
T 3t6q_A          357 LSHDDIE-TSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKD----------AQSPFQNLH  425 (606)
T ss_dssp             CCSSCCC-EEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCT----------TCCTTTTCT
T ss_pred             CCCCccc-cccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcc----------cchhhhCcc
Confidence            7765432 2221      23667777776532 1   123455677777776543322110          011245667


Q ss_pred             CccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCCCCcccccccce
Q 014150          271 HIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNFW  350 (430)
Q Consensus       271 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~w  350 (430)
                      +|++|+++++.+....    +..+ ..+++|++|+++.+......+ .....+..+++|+.|+++++.-...        
T Consensus       426 ~L~~L~l~~n~l~~~~----~~~~-~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~l~~L~~L~Ls~n~l~~~--------  491 (606)
T 3t6q_A          426 LLKVLNLSHSLLDISS----EQLF-DGLPALQHLNLQGNHFPKGNI-QKTNSLQTLGRLEILVLSFCDLSSI--------  491 (606)
T ss_dssp             TCCEEECTTCCCBTTC----TTTT-TTCTTCCEEECTTCBCGGGEE-CSSCGGGGCTTCCEEECTTSCCCEE--------
T ss_pred             cCCEEECCCCccCCcC----HHHH-hCCCCCCEEECCCCCCCcccc-ccchhhccCCCccEEECCCCccCcc--------
Confidence            7777777766543211    1111 135677777774332111000 0112356677788877777643210        


Q ss_pred             ecccccccccCceEEEEEeeecCccHHHHHHHHHccCCCcceEEEeecC
Q 014150          351 EVDHWTSLFSQLRMVKIVGISGIRSELEFIKFVLSNSPVLETMTIKPAS  399 (430)
Q Consensus       351 ~~~~~~~~~~~L~~v~i~~~~~~~~e~~~~~~il~~~~~L~~l~i~~~~  399 (430)
                      ..... ..+++|+.+.+.+-.-..    .....+.+.+.| .+.+..+.
T Consensus       492 ~~~~~-~~l~~L~~L~Ls~N~l~~----~~~~~l~~l~~L-~L~L~~N~  534 (606)
T 3t6q_A          492 DQHAF-TSLKMMNHVDLSHNRLTS----SSIEALSHLKGI-YLNLASNH  534 (606)
T ss_dssp             CTTTT-TTCTTCCEEECCSSCCCG----GGGGGGTTCCSC-EEECCSSC
T ss_pred             Chhhh-ccccCCCEEECCCCccCc----CChhHhCccccc-EEECcCCc
Confidence            00001 135677777776532211    112234566777 66666554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.76  E-value=1.1e-09  Score=114.56  Aligned_cols=66  Identities=24%  Similarity=0.243  Sum_probs=33.9

Q ss_pred             CCCcccc-cCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeecc
Q 014150          139 VPSSLFL-CQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNF  204 (430)
Q Consensus       139 lp~~~~~-~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c  204 (430)
                      +|..+.. +++|++|+|++|.+..  |..+.++++|++|+|.++.+.+..-...+..+++|++|.+.++
T Consensus       285 ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n  353 (768)
T 3rgz_A          285 IPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN  353 (768)
T ss_dssp             CCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSS
T ss_pred             cCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCC
Confidence            3444333 3556666666555432  3344556666666666665543222223455666666666654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.75  E-value=4.8e-09  Score=95.17  Aligned_cols=64  Identities=20%  Similarity=0.244  Sum_probs=40.7

Q ss_pred             cCCCcccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeecc
Q 014150          138 KVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNF  204 (430)
Q Consensus       138 ~lp~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c  204 (430)
                      .+|..+.  ++|+.|+|+++.+..  +..+.++++|++|+|.++.+..- ...++..+++|++|.+.++
T Consensus        30 ~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n   95 (270)
T 2o6q_A           30 AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTL-PAGIFKELKNLETLWVTDN   95 (270)
T ss_dssp             SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCC-CTTTTSSCTTCCEEECCSS
T ss_pred             ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCee-ChhhhcCCCCCCEEECCCC
Confidence            3554332  567788888777654  23566778888888877765421 1233456777888877765

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.74  E-value=1.4e-09  Score=100.53  Aligned_cols=230  Identities=18%  Similarity=0.168  Sum_probs=125.8

Q ss_pred             CCceEEEEEecCCCcccCCCcc-cccCceeEEEEeeeeecC----CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccc
Q 014150          122 SCVKEFILEIWKGQRYKVPSSL-FLCQNLIHLELFNCLLKP----PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTL  196 (430)
Q Consensus       122 ~~l~~l~l~~~~~~~~~lp~~~-~~~~~L~~L~L~~~~~~~----~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~L  196 (430)
                      .+++.+++.....  ..+|..+ ..+++|++|+|++|.+..    +..+..+++|+.|+|+++.+..  +...+..+++|
T Consensus        28 ~~l~~L~L~~n~l--~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~--l~~~~~~l~~L  103 (306)
T 2z66_A           28 SSATRLELESNKL--QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT--MSSNFLGLEQL  103 (306)
T ss_dssp             TTCCEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE--EEEEEETCTTC
T ss_pred             CCCCEEECCCCcc--CccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc--ChhhcCCCCCC
Confidence            4566666654322  2455543 456778888887776542    1233457778888887776542  12224567777


Q ss_pred             cceEeeccCCceEE-----EEeCCCcceEEEecccc----ceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhc
Q 014150          197 ERLTLMNFDGFTHL-----NIDAPNLQFFDIGGVFD----DVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFV  267 (430)
Q Consensus       197 e~L~l~~c~~~~~l-----~i~~p~L~~L~l~~~~~----~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~  267 (430)
                      ++|.+.++.- ..+     --..++|+.|.+.++..    ...+..+++|+.|+++.+...+.          .+...+.
T Consensus       104 ~~L~l~~n~l-~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----------~~~~~~~  172 (306)
T 2z66_A          104 EHLDFQHSNL-KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN----------FLPDIFT  172 (306)
T ss_dssp             CEEECTTSEE-ESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG----------EECSCCT
T ss_pred             CEEECCCCcc-cccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc----------cchhHHh
Confidence            7777776421 100     01235677777765321    12355678888888865543210          0112356


Q ss_pred             cCCCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCCCCcccccc
Q 014150          268 HLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLT  347 (430)
Q Consensus       268 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~  347 (430)
                      .+++|++|+++.+.+....    +..+. .+++|+.|+++.+......    ...+..+++|+.|+++++.-....    
T Consensus       173 ~l~~L~~L~Ls~n~l~~~~----~~~~~-~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~~----  239 (306)
T 2z66_A          173 ELRNLTFLDLSQCQLEQLS----PTAFN-SLSSLQVLNMSHNNFFSLD----TFPYKCLNSLQVLDYSLNHIMTSK----  239 (306)
T ss_dssp             TCTTCCEEECTTSCCCEEC----TTTTT-TCTTCCEEECTTSCCSBCC----SGGGTTCTTCCEEECTTSCCCBCS----
T ss_pred             hCcCCCEEECCCCCcCCcC----HHHhc-CCCCCCEEECCCCccCccC----hhhccCcccCCEeECCCCCCcccC----
Confidence            7888999999887654321    11121 4668888888433221110    113577899999999887543110    


Q ss_pred             cceecccccccccCceEEEEEe--eecCccHHHHHHHH
Q 014150          348 NFWEVDHWTSLFSQLRMVKIVG--ISGIRSELEFIKFV  383 (430)
Q Consensus       348 ~~w~~~~~~~~~~~L~~v~i~~--~~~~~~e~~~~~~i  383 (430)
                          ........++|+.+.+.+  +.+.+....+..++
T Consensus       240 ----~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l  273 (306)
T 2z66_A          240 ----KQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWI  273 (306)
T ss_dssp             ----SSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHH
T ss_pred             ----HHHHHhhhccCCEEEccCCCeecccChHHHHHHH
Confidence                001111225788888775  44444444444443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.74  E-value=7e-09  Score=99.37  Aligned_cols=145  Identities=13%  Similarity=0.058  Sum_probs=68.3

Q ss_pred             CCcceEEEeccc-cceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeehhhcccCCCC
Q 014150          215 PNLQFFDIGGVF-DDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSR  293 (430)
Q Consensus       215 p~L~~L~l~~~~-~~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~  293 (430)
                      ++|+.|++.++. ..+.....++|+.|+++.+...+         .    ..+..+++|++|+++.+.+......    .
T Consensus       205 ~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~---------~----~~l~~l~~L~~L~Ls~n~l~~~~~~----~  267 (390)
T 3o6n_A          205 IAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD---------T----AWLLNYPGLVEVDLSYNELEKIMYH----P  267 (390)
T ss_dssp             SSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCC---------C----GGGGGCTTCSEEECCSSCCCEEESG----G
T ss_pred             CcceEEECCCCeeeeccccccccccEEECCCCCCcc---------c----HHHcCCCCccEEECCCCcCCCcChh----H
Confidence            456666665532 11222234567777765443211         0    2356677777777776654322111    0


Q ss_pred             CCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCCCCcccccccceecccccccccCceEEEEEeeecC
Q 014150          294 LPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNFWEVDHWTSLFSQLRMVKIVGISGI  373 (430)
Q Consensus       294 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~w~~~~~~~~~~~L~~v~i~~~~~~  373 (430)
                      +. .+++|+.|+++.+....     ++.....+|+|+.|+++++.-...         .. .-..+.+|+.+.+.+-.-.
T Consensus       268 ~~-~l~~L~~L~L~~n~l~~-----~~~~~~~l~~L~~L~L~~n~l~~~---------~~-~~~~l~~L~~L~L~~N~i~  331 (390)
T 3o6n_A          268 FV-KMQRLERLYISNNRLVA-----LNLYGQPIPTLKVLDLSHNHLLHV---------ER-NQPQFDRLENLYLDHNSIV  331 (390)
T ss_dssp             GT-TCSSCCEEECCSSCCCE-----EECSSSCCTTCCEEECCSSCCCCC---------GG-GHHHHTTCSEEECCSSCCC
T ss_pred             cc-ccccCCEEECCCCcCcc-----cCcccCCCCCCCEEECCCCcceec---------Cc-cccccCcCCEEECCCCccc
Confidence            11 34566666664322111     122234567777777766543210         00 0013456666666543211


Q ss_pred             ccHHHHHHHHHccCCCcceEEEeecC
Q 014150          374 RSELEFIKFVLSNSPVLETMTIKPAS  399 (430)
Q Consensus       374 ~~e~~~~~~il~~~~~L~~l~i~~~~  399 (430)
                      .-       -+...+.|+++.+..++
T Consensus       332 ~~-------~~~~~~~L~~L~l~~N~  350 (390)
T 3o6n_A          332 TL-------KLSTHHTLKNLTLSHND  350 (390)
T ss_dssp             CC-------CCCTTCCCSEEECCSSC
T ss_pred             ee-------CchhhccCCEEEcCCCC
Confidence            11       04556667776666554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.74  E-value=1.1e-08  Score=94.73  Aligned_cols=185  Identities=16%  Similarity=0.126  Sum_probs=116.4

Q ss_pred             CCceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEe
Q 014150          122 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTL  201 (430)
Q Consensus       122 ~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l  201 (430)
                      .+++++++..+..  ..+| .+..+++|+.|++++|.+.....+..+++|+.|+|.++.+.+-  . .+..+++|++|.+
T Consensus        41 ~~L~~L~l~~~~i--~~l~-~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~--~-~~~~l~~L~~L~l  114 (308)
T 1h6u_A           41 DGITTLSAFGTGV--TTIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNV--S-AIAGLQSIKTLDL  114 (308)
T ss_dssp             HTCCEEECTTSCC--CCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCC--G-GGTTCTTCCEEEC
T ss_pred             CCcCEEEeeCCCc--cCch-hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCc--h-hhcCCCCCCEEEC
Confidence            4677776643322  2344 3566788888888888776643477888888888888876543  1 3667888888888


Q ss_pred             eccCCceEEE--EeCCCcceEEEeccc-cce-eeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEE
Q 014150          202 MNFDGFTHLN--IDAPNLQFFDIGGVF-DDV-TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEI  277 (430)
Q Consensus       202 ~~c~~~~~l~--i~~p~L~~L~l~~~~-~~~-~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l  277 (430)
                      .++.- ..+.  -..++|+.|.+.++. ..+ .+..+++|+.|+++.+...+.         .   . +..+++|+.|++
T Consensus       115 ~~n~l-~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~---------~---~-l~~l~~L~~L~l  180 (308)
T 1h6u_A          115 TSTQI-TDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL---------T---P-LANLSKLTTLKA  180 (308)
T ss_dssp             TTSCC-CCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC---------G---G-GTTCTTCCEEEC
T ss_pred             CCCCC-CCchhhcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCC---------h---h-hcCCCCCCEEEC
Confidence            87642 1111  123677777776632 111 256788888888865432211         1   1 577888999999


Q ss_pred             eeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCC
Q 014150          278 QSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPE  339 (430)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~  339 (430)
                      +.+.+..+..      + ..+++|++|+++.+....     +.. +..+|+|+.|++.++.-
T Consensus       181 ~~n~l~~~~~------l-~~l~~L~~L~L~~N~l~~-----~~~-l~~l~~L~~L~l~~N~i  229 (308)
T 1h6u_A          181 DDNKISDISP------L-ASLPNLIEVHLKNNQISD-----VSP-LANTSNLFIVTLTNQTI  229 (308)
T ss_dssp             CSSCCCCCGG------G-GGCTTCCEEECTTSCCCB-----CGG-GTTCTTCCEEEEEEEEE
T ss_pred             CCCccCcChh------h-cCCCCCCEEEccCCccCc-----ccc-ccCCCCCCEEEccCCee
Confidence            8876643211      1 246688888885433221     111 67889999999888653

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.74  E-value=4.2e-09  Score=95.71  Aligned_cols=80  Identities=20%  Similarity=0.134  Sum_probs=49.4

Q ss_pred             CCceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEe
Q 014150          122 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTL  201 (430)
Q Consensus       122 ~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l  201 (430)
                      +.++++.+.....  ..+ ..+..+++|+.|++++|.+.....+..+++|++|+|.++.+..- ....+..++.|++|.+
T Consensus        41 ~~L~~L~l~~~~i--~~~-~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L  116 (272)
T 3rfs_A           41 NSIDQIIANNSDI--KSV-QGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSL-PNGVFDKLTNLKELVL  116 (272)
T ss_dssp             TTCCEEECTTSCC--CCC-TTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEEC
T ss_pred             cceeeeeeCCCCc--ccc-cccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCcc-ChhHhcCCcCCCEEEC
Confidence            4566665543321  122 23556677788888777766655566777788888777766532 2233566777777777


Q ss_pred             eccC
Q 014150          202 MNFD  205 (430)
Q Consensus       202 ~~c~  205 (430)
                      .++.
T Consensus       117 ~~n~  120 (272)
T 3rfs_A          117 VENQ  120 (272)
T ss_dssp             TTSC
T ss_pred             CCCc
Confidence            7653

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.73  E-value=1.3e-08  Score=102.37  Aligned_cols=239  Identities=15%  Similarity=0.093  Sum_probs=135.3

Q ss_pred             CCceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEe
Q 014150          122 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTL  201 (430)
Q Consensus       122 ~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l  201 (430)
                      ++++.+++.....  ..+|..+..+ +|++|++++|.+..-+ ...+++|+.|++.++.+....-.   ..+|+|++|++
T Consensus       282 ~~L~~L~l~~~~l--~~l~~~~~~~-~L~~L~l~~n~~~~l~-~~~l~~L~~L~l~~n~~~~~~~~---~~~~~L~~L~l  354 (570)
T 2z63_A          282 TNVSSFSLVSVTI--ERVKDFSYNF-GWQHLELVNCKFGQFP-TLKLKSLKRLTFTSNKGGNAFSE---VDLPSLEFLDL  354 (570)
T ss_dssp             TTCSEEEEESCEE--CSCCBCCSCC-CCSEEEEESCBCSSCC-BCBCSSCCEEEEESCBSCCBCCC---CBCTTCCEEEC
T ss_pred             CcccEEEecCccc--hhhhhhhccC-CccEEeeccCcccccC-cccccccCEEeCcCCcccccccc---ccCCCCCEEeC
Confidence            6788888865432  3577777777 8999999988776422 24678888888888765432111   56888888888


Q ss_pred             eccCCceEEE------EeCCCcceEEEecccc---ceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCc
Q 014150          202 MNFDGFTHLN------IDAPNLQFFDIGGVFD---DVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHI  272 (430)
Q Consensus       202 ~~c~~~~~l~------i~~p~L~~L~l~~~~~---~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L  272 (430)
                      .++.-. .+.      ...++|+.|++.++..   ...+..+++|+.|++..+.......          ...+.++++|
T Consensus       355 ~~n~l~-~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~----------~~~~~~l~~L  423 (570)
T 2z63_A          355 SRNGLS-FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE----------FSVFLSLRNL  423 (570)
T ss_dssp             CSSCCB-EEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTT----------SCTTTTCTTC
T ss_pred             cCCccC-ccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccc----------hhhhhcCCCC
Confidence            876432 221      1247888888776321   1125677888888876543321100          0124667788


Q ss_pred             cEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCCCCcccccccceec
Q 014150          273 RRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNFWEV  352 (430)
Q Consensus       273 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~w~~  352 (430)
                      ++|+++.+.+...    .+..+ ..+++|+.|++..+.....   .++..+..+++|+.|+|.++.-...        ..
T Consensus       424 ~~L~l~~n~l~~~----~~~~~-~~l~~L~~L~l~~n~l~~~---~~p~~~~~l~~L~~L~l~~n~l~~~--------~~  487 (570)
T 2z63_A          424 IYLDISHTHTRVA----FNGIF-NGLSSLEVLKMAGNSFQEN---FLPDIFTELRNLTFLDLSQCQLEQL--------SP  487 (570)
T ss_dssp             CEEECTTSCCEEC----CTTTT-TTCTTCCEEECTTCEEGGG---EECSCCTTCTTCCEEECTTSCCCEE--------CT
T ss_pred             CEEeCcCCccccc----chhhh-hcCCcCcEEECcCCcCccc---cchhhhhcccCCCEEECCCCccccC--------Ch
Confidence            8888877654321    11111 1456777777733221100   1234466778888888877643210        00


Q ss_pred             ccccccccCceEEEEEeeecCccHHHHHHHHHccCCCcceEEEeecC
Q 014150          353 DHWTSLFSQLRMVKIVGISGIRSELEFIKFVLSNSPVLETMTIKPAS  399 (430)
Q Consensus       353 ~~~~~~~~~L~~v~i~~~~~~~~e~~~~~~il~~~~~L~~l~i~~~~  399 (430)
                      . .-..+++|+.+.+.+-.-..    +....+.+.++|+.+.+..++
T Consensus       488 ~-~~~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~N~  529 (570)
T 2z63_A          488 T-AFNSLSSLQVLNMASNQLKS----VPDGIFDRLTSLQKIWLHTNP  529 (570)
T ss_dssp             T-TTTTCTTCCEEECCSSCCSC----CCTTTTTTCTTCCEEECCSSC
T ss_pred             h-hhhcccCCCEEeCCCCcCCC----CCHHHhhcccCCcEEEecCCc
Confidence            0 01134667777666421110    111234667777777777654

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.73  E-value=7.2e-09  Score=96.19  Aligned_cols=194  Identities=18%  Similarity=0.107  Sum_probs=119.5

Q ss_pred             CCceEEEEEecCCC-cccCCCcccccCceeEEEEee-eeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCcccc
Q 014150          122 SCVKEFILEIWKGQ-RYKVPSSLFLCQNLIHLELFN-CLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLE  197 (430)
Q Consensus       122 ~~l~~l~l~~~~~~-~~~lp~~~~~~~~L~~L~L~~-~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le  197 (430)
                      ..++++++...... ...+|..+..+++|++|++++ +.+..  |..+.++++|++|+|+++.+.+. +...+..+++|+
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~  128 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE-CCGGGGGCTTCC
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCc-CCHHHhCCCCCC
Confidence            46777777654332 126788888999999999995 66653  55688999999999999987643 344567899999


Q ss_pred             ceEeeccCCceEEE---EeCCCcceEEEecccc----ceeeccCC-CceEEEEEEEeeccccccCCCCCcchHHHHhccC
Q 014150          198 RLTLMNFDGFTHLN---IDAPNLQFFDIGGVFD----DVTFENTF-HLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHL  269 (430)
Q Consensus       198 ~L~l~~c~~~~~l~---i~~p~L~~L~l~~~~~----~~~~~~~p-~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~  269 (430)
                      +|++.++.-...+.   -..++|+.|++.++.-    ...+..++ +|+.++++.+.....           ....+..+
T Consensus       129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~-----------~~~~~~~l  197 (313)
T 1ogq_A          129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK-----------IPPTFANL  197 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEE-----------CCGGGGGC
T ss_pred             EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeecc-----------CChHHhCC
Confidence            99999763211110   1246788888776421    12344555 778887765433211           01223444


Q ss_pred             CCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecC
Q 014150          270 PHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARP  338 (430)
Q Consensus       270 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~  338 (430)
                      + |+.|+++.+.+.....    ..+ ..+++|+.|+++.+.....    + ..+..+++|++|+++++.
T Consensus       198 ~-L~~L~Ls~N~l~~~~~----~~~-~~l~~L~~L~L~~N~l~~~----~-~~~~~l~~L~~L~Ls~N~  255 (313)
T 1ogq_A          198 N-LAFVDLSRNMLEGDAS----VLF-GSDKNTQKIHLAKNSLAFD----L-GKVGLSKNLNGLDLRNNR  255 (313)
T ss_dssp             C-CSEEECCSSEEEECCG----GGC-CTTSCCSEEECCSSEECCB----G-GGCCCCTTCCEEECCSSC
T ss_pred             c-ccEEECcCCcccCcCC----HHH-hcCCCCCEEECCCCceeee----c-CcccccCCCCEEECcCCc
Confidence            4 8888887776542111    111 1456777777743322111    1 124667888888887765

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.72  E-value=1.1e-08  Score=100.90  Aligned_cols=176  Identities=16%  Similarity=0.064  Sum_probs=90.3

Q ss_pred             cccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEE----EeCC
Q 014150          142 SLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLN----IDAP  215 (430)
Q Consensus       142 ~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~----i~~p  215 (430)
                      .+..+++|+.|++++|.+..  +..|.++++|+.|+|.++.+..- ....+..+++|+.|.+.++.-. .+.    -..+
T Consensus       123 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~i~-~~~~~~~~~l~  200 (477)
T 2id5_A          123 MFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI-PTEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLY  200 (477)
T ss_dssp             TTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSC-CHHHHTTCTTCCEEEEESCCCC-EECTTCSCSCT
T ss_pred             HccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCccc-ChhHhcccCCCcEEeCCCCcCc-EeChhhcccCc
Confidence            34455666666666665432  33455666666666666655432 1233556666777766654321 111    1235


Q ss_pred             CcceEEEecccc--ce--eeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeehhhcccCC
Q 014150          216 NLQFFDIGGVFD--DV--TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVP  291 (430)
Q Consensus       216 ~L~~L~l~~~~~--~~--~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  291 (430)
                      +|+.|++.++..  .+  .....++|+.|+++.+....           .-...+..+++|+.|+|+.+.+......   
T Consensus       201 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-----------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---  266 (477)
T 2id5_A          201 RLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA-----------VPYLAVRHLVYLRFLNLSYNPISTIEGS---  266 (477)
T ss_dssp             TCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCS-----------CCHHHHTTCTTCCEEECCSSCCCEECTT---
T ss_pred             ccceeeCCCCccccccCcccccCccccEEECcCCcccc-----------cCHHHhcCccccCeeECCCCcCCccChh---
Confidence            666666655211  00  11123356666665442211           0123467778888888887765432111   


Q ss_pred             CCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCC
Q 014150          292 SRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPE  339 (430)
Q Consensus       292 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~  339 (430)
                       .+ ..+++|+.|+++.+.....    .+..+..+++|+.|+|+++.-
T Consensus       267 -~~-~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l  308 (477)
T 2id5_A          267 -ML-HELLRLQEIQLVGGQLAVV----EPYAFRGLNYLRVLNVSGNQL  308 (477)
T ss_dssp             -SC-TTCTTCCEEECCSSCCSEE----CTTTBTTCTTCCEEECCSSCC
T ss_pred             -hc-cccccCCEEECCCCccceE----CHHHhcCcccCCEEECCCCcC
Confidence             11 1455777777743322111    122356677777777777643

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.72  E-value=7.1e-09  Score=99.32  Aligned_cols=119  Identities=15%  Similarity=0.158  Sum_probs=69.6

Q ss_pred             CCceEEEEEecCCCcccCCC-cccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccc
Q 014150          122 SCVKEFILEIWKGQRYKVPS-SLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLER  198 (430)
Q Consensus       122 ~~l~~l~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~  198 (430)
                      ++++.+++.....  ..++. .+..+++|++|+|++|.+..  +..+.++++|+.|+|.++.+..- ...++..+++|++
T Consensus        69 ~~L~~L~L~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~~  145 (390)
T 3o6n_A           69 RQVELLNLNDLQI--EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL-PRGIFHNTPKLTT  145 (390)
T ss_dssp             CCCSEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCE
T ss_pred             ccCcEEECCCCcc--cccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcC-CHHHhcCCCCCcE
Confidence            5677776643322  22333 44566778888888777654  33466778888888887776521 1233566778888


Q ss_pred             eEeeccCCceEEE---E-eCCCcceEEEecc-ccceeeccCCCceEEEEEE
Q 014150          199 LTLMNFDGFTHLN---I-DAPNLQFFDIGGV-FDDVTFENTFHLALVSIGL  244 (430)
Q Consensus       199 L~l~~c~~~~~l~---i-~~p~L~~L~l~~~-~~~~~~~~~p~L~~l~i~~  244 (430)
                      |.+.++.-. .+.   + ..++|+.|.+.++ ...+.+..+++|+.+++..
T Consensus       146 L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~  195 (390)
T 3o6n_A          146 LSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSY  195 (390)
T ss_dssp             EECCSSCCC-BCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCS
T ss_pred             EECCCCccC-ccChhhccCCCCCCEEECCCCcCCccccccccccceeeccc
Confidence            888765321 111   1 2367777777653 2333445566666666643

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.72  E-value=4.6e-09  Score=106.51  Aligned_cols=62  Identities=21%  Similarity=0.157  Sum_probs=30.0

Q ss_pred             hccCCCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecC
Q 014150          266 FVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARP  338 (430)
Q Consensus       266 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~  338 (430)
                      +..+++|+.|+|+++.+..+...      ...+++|+.|+++.+...     .++.-+..+|+|+.|+|.++.
T Consensus       274 ~~~l~~L~~L~Ls~N~l~~l~~~------~~~l~~L~~L~Ls~N~l~-----~i~~~~~~l~~L~~L~L~~N~  335 (597)
T 3oja_B          274 FVKMQRLERLYISNNRLVALNLY------GQPIPTLKVLDLSHNHLL-----HVERNQPQFDRLENLYLDHNS  335 (597)
T ss_dssp             GTTCSSCCEEECTTSCCCEEECS------SSCCTTCCEEECCSSCCC-----CCGGGHHHHTTCSEEECCSSC
T ss_pred             hcCccCCCEEECCCCCCCCCCcc------cccCCCCcEEECCCCCCC-----ccCcccccCCCCCEEECCCCC
Confidence            34555555555555544321110      013556666666433221     122234556677777776654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.70  E-value=1.7e-09  Score=109.85  Aligned_cols=232  Identities=15%  Similarity=0.074  Sum_probs=113.7

Q ss_pred             ccccCceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEEE-eCCCcceEE
Q 014150          143 LFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNI-DAPNLQFFD  221 (430)
Q Consensus       143 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~i-~~p~L~~L~  221 (430)
                      +..+++|+.|+++++.+...+.+..+++|++|++.++.+.  .+..+  .++.|++|.+.++.....+.+ ..++|+.|+
T Consensus       281 ~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~--~lp~~--~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~  356 (606)
T 3vq2_A          281 FHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLK--QFPTL--DLPFLKSLTLTMNKGSISFKKVALPSLSYLD  356 (606)
T ss_dssp             CGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCS--SCCCC--CCSSCCEEEEESCSSCEECCCCCCTTCCEEE
T ss_pred             cccCCCCCEEEecCccchhhhhccccccCCEEEcccccCc--ccccC--CCCccceeeccCCcCccchhhccCCCCCEEE
Confidence            4455777777777776655445667777777777777762  23322  677777777777644332221 235666666


Q ss_pred             Eecccc------ceeeccCCCceEEEEEEEeeccccccCC---------CC--C-cchH-HHHhccCCCccEEEEeeeee
Q 014150          222 IGGVFD------DVTFENTFHLALVSIGLYVNVKNDQAMG---------PG--N-SCKL-LRFFVHLPHIRRLEIQSYFL  282 (430)
Q Consensus       222 l~~~~~------~~~~~~~p~L~~l~i~~~~~~~~~~~~~---------~~--~-~~~~-~~~l~~~~~L~~L~l~~~~~  282 (430)
                      +.++.-      ...+..+++|+.|+++.+........+.         ..  . .... ...+..+++|++|+++.+.+
T Consensus       357 ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l  436 (606)
T 3vq2_A          357 LSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT  436 (606)
T ss_dssp             CCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCC
T ss_pred             CcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCC
Confidence            654311      1123455666666665432211000000         00  0 0000 01234555666666655543


Q ss_pred             ehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCCCCcccccccceecccccccccCc
Q 014150          283 KYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNFWEVDHWTSLFSQL  362 (430)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~w~~~~~~~~~~~L  362 (430)
                      ...    .+..+. .+++|+.|+++.+.....   .++..+..+++|+.|+++++.-...        ... .-..+++|
T Consensus       437 ~~~----~~~~~~-~l~~L~~L~l~~n~l~~~---~~~~~~~~l~~L~~L~Ls~n~l~~~--------~~~-~~~~l~~L  499 (606)
T 3vq2_A          437 KID----FDGIFL-GLTSLNTLKMAGNSFKDN---TLSNVFANTTNLTFLDLSKCQLEQI--------SWG-VFDTLHRL  499 (606)
T ss_dssp             EEC----CTTTTT-TCTTCCEEECTTCEEGGG---EECSCCTTCTTCCEEECTTSCCCEE--------CTT-TTTTCTTC
T ss_pred             Ccc----chhhhc-CCCCCCEEECCCCcCCCc---chHHhhccCCCCCEEECCCCcCCcc--------Chh-hhcccccC
Confidence            211    111111 345666666632211100   0233456667777777766543210        000 01135778


Q ss_pred             eEEEEEeeecCccHHHHHHHHHccCCCcceEEEeecC
Q 014150          363 RMVKIVGISGIRSELEFIKFVLSNSPVLETMTIKPAS  399 (430)
Q Consensus       363 ~~v~i~~~~~~~~e~~~~~~il~~~~~L~~l~i~~~~  399 (430)
                      +.+.+.+-.-..    .....+.+.++|+.+.+..+.
T Consensus       500 ~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~l~~N~  532 (606)
T 3vq2_A          500 QLLNMSHNNLLF----LDSSHYNQLYSLSTLDCSFNR  532 (606)
T ss_dssp             CEEECCSSCCSC----EEGGGTTTCTTCCEEECTTSC
T ss_pred             CEEECCCCcCCC----cCHHHccCCCcCCEEECCCCc
Confidence            887776532211    111235677889998888655

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.70  E-value=3.2e-09  Score=111.22  Aligned_cols=146  Identities=12%  Similarity=0.077  Sum_probs=84.3

Q ss_pred             CCceEEEEEecCCCcccCCC--cccccCceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCcc-ccc
Q 014150          122 SCVKEFILEIWKGQRYKVPS--SLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPT-LER  198 (430)
Q Consensus       122 ~~l~~l~l~~~~~~~~~lp~--~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~-Le~  198 (430)
                      ++++.|++..+...  .+|.  .+..+++|+.|+|++|.+..-+.+..+++|+.|+|+++.+.  .+...+..++. |+.
T Consensus       548 ~~L~~L~Ls~N~L~--~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~--~lp~~l~~l~~~L~~  623 (876)
T 4ecn_A          548 PKIQIFYMGYNNLE--EFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIE--EIPEDFCAFTDQVEG  623 (876)
T ss_dssp             TTCCEEECCSSCCC--BCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCS--CCCTTSCEECTTCCE
T ss_pred             CCccEEEeeCCcCC--ccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccc--cchHHHhhccccCCE
Confidence            36777776554332  6777  67777888888888877654336777888888888887765  34444666777 888


Q ss_pred             eEeeccCCceEEE--E---eCCCcceEEEeccccc-----e--eec--cCCCceEEEEEEEeeccccccCCCCCcchHHH
Q 014150          199 LTLMNFDGFTHLN--I---DAPNLQFFDIGGVFDD-----V--TFE--NTFHLALVSIGLYVNVKNDQAMGPGNSCKLLR  264 (430)
Q Consensus       199 L~l~~c~~~~~l~--i---~~p~L~~L~l~~~~~~-----~--~~~--~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~  264 (430)
                      |.+.++.- ..+.  +   ..++|+.|.+.++.-.     +  .+.  ..++|+.|+++.+.....           -..
T Consensus       624 L~Ls~N~L-~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~l-----------p~~  691 (876)
T 4ecn_A          624 LGFSHNKL-KYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKF-----------PTE  691 (876)
T ss_dssp             EECCSSCC-CSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSC-----------CHH
T ss_pred             EECcCCCC-CcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCcc-----------CHH
Confidence            88887642 1111  0   1134667776653210     0  011  234666666654332110           023


Q ss_pred             HhccCCCccEEEEeeeeee
Q 014150          265 FFVHLPHIRRLEIQSYFLK  283 (430)
Q Consensus       265 ~l~~~~~L~~L~l~~~~~~  283 (430)
                      ++..+++|+.|.|+.+.+.
T Consensus       692 ~~~~l~~L~~L~Ls~N~L~  710 (876)
T 4ecn_A          692 LFATGSPISTIILSNNLMT  710 (876)
T ss_dssp             HHHTTCCCSEEECCSCCCS
T ss_pred             HHccCCCCCEEECCCCcCC
Confidence            3446677777777766544

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.70  E-value=1.2e-08  Score=94.35  Aligned_cols=185  Identities=16%  Similarity=0.133  Sum_probs=122.2

Q ss_pred             ccCceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEE--EeCCCcceEEE
Q 014150          145 LCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLN--IDAPNLQFFDI  222 (430)
Q Consensus       145 ~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~--i~~p~L~~L~l  222 (430)
                      .+++|++|+++++.+....++..+++|+.|+|+++.+.+-.  . +..+++|+.|.+.++. +..+.  -..++|+.|.+
T Consensus        39 ~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~--~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l  114 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLA--P-LKNLTKITELELSGNP-LKNVSAIAGLQSIKTLDL  114 (308)
T ss_dssp             HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCCSCCEEECCSCC-CSCCGGGTTCTTCCEEEC
T ss_pred             HcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCCh--h-HccCCCCCEEEccCCc-CCCchhhcCCCCCCEEEC
Confidence            46899999999998877567888999999999999876432  2 7889999999999874 22221  12468888888


Q ss_pred             eccc-cce-eeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeehhhcccCCCCCCccccc
Q 014150          223 GGVF-DDV-TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVD  300 (430)
Q Consensus       223 ~~~~-~~~-~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  300 (430)
                      .++. ..+ .+..+++|+.|+++.+.....         ..    +..+++|+.|.++.+.+..+..      + ..+++
T Consensus       115 ~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~---------~~----l~~l~~L~~L~l~~n~l~~~~~------l-~~l~~  174 (308)
T 1h6u_A          115 TSTQITDVTPLAGLSNLQVLYLDLNQITNI---------SP----LAGLTNLQYLSIGNAQVSDLTP------L-ANLSK  174 (308)
T ss_dssp             TTSCCCCCGGGTTCTTCCEEECCSSCCCCC---------GG----GGGCTTCCEEECCSSCCCCCGG------G-TTCTT
T ss_pred             CCCCCCCchhhcCCCCCCEEECCCCccCcC---------cc----ccCCCCccEEEccCCcCCCChh------h-cCCCC
Confidence            7642 111 256788888888865432211         11    5778888999888776543211      1 14668


Q ss_pred             cceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCCCCcccccccceecccccccccCceEEEEEee
Q 014150          301 LNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNFWEVDHWTSLFSQLRMVKIVGI  370 (430)
Q Consensus       301 L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~w~~~~~~~~~~~L~~v~i~~~  370 (430)
                      |+.|+++.+....     +.. +..+++|+.|+++++.-...        .   .-..+++|+.+.+.+-
T Consensus       175 L~~L~l~~n~l~~-----~~~-l~~l~~L~~L~L~~N~l~~~--------~---~l~~l~~L~~L~l~~N  227 (308)
T 1h6u_A          175 LTTLKADDNKISD-----ISP-LASLPNLIEVHLKNNQISDV--------S---PLANTSNLFIVTLTNQ  227 (308)
T ss_dssp             CCEEECCSSCCCC-----CGG-GGGCTTCCEEECTTSCCCBC--------G---GGTTCTTCCEEEEEEE
T ss_pred             CCEEECCCCccCc-----Chh-hcCCCCCCEEEccCCccCcc--------c---cccCCCCCCEEEccCC
Confidence            8888885443221     111 67888899988888754310        0   0113567777777654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.66  E-value=4e-08  Score=84.56  Aligned_cols=55  Identities=25%  Similarity=0.292  Sum_probs=23.9

Q ss_pred             CceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeecc
Q 014150          147 QNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNF  204 (430)
Q Consensus       147 ~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c  204 (430)
                      ++|+.|+++++.+..-+++..+++|++|++.++.+..-  . .++.+++|++|.+.++
T Consensus        44 ~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~--~-~l~~l~~L~~L~l~~n   98 (197)
T 4ezg_A           44 NSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNY--N-PISGLSNLERLRIMGK   98 (197)
T ss_dssp             HTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCC--G-GGTTCTTCCEEEEECT
T ss_pred             CCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcc--h-hhhcCCCCCEEEeECC
Confidence            44455555554444322344455555555554433211  1 2334444555544443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.64  E-value=1.8e-08  Score=98.56  Aligned_cols=180  Identities=15%  Similarity=0.106  Sum_probs=110.2

Q ss_pred             CCceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEe
Q 014150          122 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTL  201 (430)
Q Consensus       122 ~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l  201 (430)
                      ++++.+++..+...  .+|  +..+++|++|++++|.+... .+.++++|+.|+|.++.+.+-  .  +..+++|+.|.+
T Consensus        64 ~~L~~L~Ls~n~l~--~~~--~~~l~~L~~L~Ls~N~l~~~-~~~~l~~L~~L~L~~N~l~~l--~--~~~l~~L~~L~l  134 (457)
T 3bz5_A           64 TGLTKLICTSNNIT--TLD--LSQNTNLTYLACDSNKLTNL-DVTPLTKLTYLNCDTNKLTKL--D--VSQNPLLTYLNC  134 (457)
T ss_dssp             TTCSEEECCSSCCS--CCC--CTTCTTCSEEECCSSCCSCC-CCTTCTTCCEEECCSSCCSCC--C--CTTCTTCCEEEC
T ss_pred             CCCCEEEccCCcCC--eEc--cccCCCCCEEECcCCCCcee-ecCCCCcCCEEECCCCcCCee--c--CCCCCcCCEEEC
Confidence            56666666543322  223  45567777777777766553 366777777777777766542  2  566777777777


Q ss_pred             eccCCceEEEE-eCCCcceEEEecc--ccceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEe
Q 014150          202 MNFDGFTHLNI-DAPNLQFFDIGGV--FDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQ  278 (430)
Q Consensus       202 ~~c~~~~~l~i-~~p~L~~L~l~~~--~~~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~  278 (430)
                      .++.- ..+.+ ..++|+.|.+.++  ...+.+..+++|+.|+++.+....            +.  +..+++|+.|.++
T Consensus       135 ~~N~l-~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~------------l~--l~~l~~L~~L~l~  199 (457)
T 3bz5_A          135 ARNTL-TEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE------------LD--VSQNKLLNRLNCD  199 (457)
T ss_dssp             TTSCC-SCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC------------CC--CTTCTTCCEEECC
T ss_pred             CCCcc-ceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce------------ec--cccCCCCCEEECc
Confidence            76532 22222 2356777777654  233345667777777776543211            11  4677888888888


Q ss_pred             eeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCCC
Q 014150          279 SYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEE  340 (430)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~  340 (430)
                      .+.+..+.       +. .+++|+.|+++.+....     ++  +..+++|+.|++.++.-.
T Consensus       200 ~N~l~~~~-------l~-~l~~L~~L~Ls~N~l~~-----ip--~~~l~~L~~L~l~~N~l~  246 (457)
T 3bz5_A          200 TNNITKLD-------LN-QNIQLTFLDCSSNKLTE-----ID--VTPLTQLTYFDCSVNPLT  246 (457)
T ss_dssp             SSCCSCCC-------CT-TCTTCSEEECCSSCCSC-----CC--CTTCTTCSEEECCSSCCS
T ss_pred             CCcCCeec-------cc-cCCCCCEEECcCCcccc-----cC--ccccCCCCEEEeeCCcCC
Confidence            77665331       11 46789988885443222     33  678999999999887543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.64  E-value=5.2e-09  Score=97.97  Aligned_cols=105  Identities=19%  Similarity=0.186  Sum_probs=65.1

Q ss_pred             cCCCcccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEEE-eC
Q 014150          138 KVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNI-DA  214 (430)
Q Consensus       138 ~lp~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~i-~~  214 (430)
                      .+|..+.  ++|+.|+++++.+..  +..+.++++|++|+|.++.+..- ....+..+++|++|.+.++.- ..+.. ..
T Consensus        47 ~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~  122 (332)
T 2ft3_A           47 AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKI-HEKAFSPLRKLQKLYISKNHL-VEIPPNLP  122 (332)
T ss_dssp             SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CGGGSTTCTTCCEEECCSSCC-CSCCSSCC
T ss_pred             ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCcc-CHhHhhCcCCCCEEECCCCcC-CccCcccc
Confidence            4555442  578888888876653  34577788888888888776532 123456788888888876532 11110 11


Q ss_pred             CCcceEEEeccc-c---ceeeccCCCceEEEEEEEe
Q 014150          215 PNLQFFDIGGVF-D---DVTFENTFHLALVSIGLYV  246 (430)
Q Consensus       215 p~L~~L~l~~~~-~---~~~~~~~p~L~~l~i~~~~  246 (430)
                      ++|+.|++.++. .   ...+..+++|+.|+++.+.
T Consensus       123 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~  158 (332)
T 2ft3_A          123 SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP  158 (332)
T ss_dssp             TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCC
T ss_pred             ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCc
Confidence            678888877632 1   1235667888888776543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.64  E-value=7.5e-09  Score=104.25  Aligned_cols=231  Identities=14%  Similarity=0.073  Sum_probs=134.1

Q ss_pred             CceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechh-hHHHHhhcCccccceEe
Q 014150          123 CVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQD-VFENLISSSPTLERLTL  201 (430)
Q Consensus       123 ~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~-~l~~l~s~cp~Le~L~l  201 (430)
                      +++++++..+...  .+|.  ..+++|+.|+++++.+........+++|+.|++.++.+... .....+..+++|+.|.+
T Consensus       305 ~L~~L~l~~n~~~--~l~~--~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l  380 (570)
T 2z63_A          305 GWQHLELVNCKFG--QFPT--LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL  380 (570)
T ss_dssp             CCSEEEEESCBCS--SCCB--CBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEEC
T ss_pred             CccEEeeccCccc--ccCc--ccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEEC
Confidence            6777777654332  4554  35678888888888765533335788888888888876532 12344667888888888


Q ss_pred             eccCCce--EEEEeCCCcceEEEecccc-----ceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccE
Q 014150          202 MNFDGFT--HLNIDAPNLQFFDIGGVFD-----DVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRR  274 (430)
Q Consensus       202 ~~c~~~~--~l~i~~p~L~~L~l~~~~~-----~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~  274 (430)
                      .++.-..  .---..++|+.|.+.++.-     ...+..+++|+.|+++.+.....           ....+.++++|++
T Consensus       381 ~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------~~~~~~~l~~L~~  449 (570)
T 2z63_A          381 SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA-----------FNGIFNGLSSLEV  449 (570)
T ss_dssp             CSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEEC-----------CTTTTTTCTTCCE
T ss_pred             CCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCccccc-----------chhhhhcCCcCcE
Confidence            8774221  1112457888888876321     12356778888888865432211           1223567888888


Q ss_pred             EEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCCCCcccccccceeccc
Q 014150          275 LEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNFWEVDH  354 (430)
Q Consensus       275 L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~w~~~~  354 (430)
                      |.++++.+..   +..+..+. .+++|+.|+++.+.....    .+..+..+|+|+.|+|+++.-....        .. 
T Consensus       450 L~l~~n~l~~---~~~p~~~~-~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~--------~~-  512 (570)
T 2z63_A          450 LKMAGNSFQE---NFLPDIFT-ELRNLTFLDLSQCQLEQL----SPTAFNSLSSLQVLNMASNQLKSVP--------DG-  512 (570)
T ss_dssp             EECTTCEEGG---GEECSCCT-TCTTCCEEECTTSCCCEE----CTTTTTTCTTCCEEECCSSCCSCCC--------TT-
T ss_pred             EECcCCcCcc---ccchhhhh-cccCCCEEECCCCccccC----ChhhhhcccCCCEEeCCCCcCCCCC--------HH-
Confidence            8888776531   11111111 466788888744322111    1234667888888888876533100        00 


Q ss_pred             ccccccCceEEEEEe--eecCccHHHHH-HHHHc
Q 014150          355 WTSLFSQLRMVKIVG--ISGIRSELEFI-KFVLS  385 (430)
Q Consensus       355 ~~~~~~~L~~v~i~~--~~~~~~e~~~~-~~il~  385 (430)
                      .-..+++|+.+.+.+  +.+......+. .++-.
T Consensus       513 ~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~wl~~  546 (570)
T 2z63_A          513 IFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK  546 (570)
T ss_dssp             TTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHH
T ss_pred             HhhcccCCcEEEecCCcccCCCcchHHHHHHHHh
Confidence            011356788888775  34444444554 44333

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.63  E-value=1.9e-08  Score=105.37  Aligned_cols=201  Identities=11%  Similarity=0.082  Sum_probs=120.1

Q ss_pred             CCceEEEEEecCCCcc----------------cCCCccc--ccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEE-
Q 014150          122 SCVKEFILEIWKGQRY----------------KVPSSLF--LCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHIT-  180 (430)
Q Consensus       122 ~~l~~l~l~~~~~~~~----------------~lp~~~~--~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~-  180 (430)
                      .+++.|++........                .+|..+.  .+++|+.|+|++|.+..  |..+.++++|+.|+|+++. 
T Consensus       448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~  527 (876)
T 4ecn_A          448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG  527 (876)
T ss_dssp             TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTT
T ss_pred             CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCC
Confidence            6888998876543221                2888877  89999999999997654  5567899999999999997 


Q ss_pred             echhhHHHH-------hhcCccccceEeeccCCceEEEE-----eCCCcceEEEeccc-cce-eeccCCCceEEEEEEEe
Q 014150          181 LSQDVFENL-------ISSSPTLERLTLMNFDGFTHLNI-----DAPNLQFFDIGGVF-DDV-TFENTFHLALVSIGLYV  246 (430)
Q Consensus       181 ~~~~~l~~l-------~s~cp~Le~L~l~~c~~~~~l~i-----~~p~L~~L~l~~~~-~~~-~~~~~p~L~~l~i~~~~  246 (430)
                      +++..+..-       +..+|+|+.|.+.++.-. .+.-     ..++|+.|.+.++. ..+ .+..+++|+.|+++.+.
T Consensus       528 lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~  606 (876)
T 4ecn_A          528 ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQ  606 (876)
T ss_dssp             SCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSC
T ss_pred             cccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCc
Confidence            765223322       245679999999987532 2221     34678888887632 111 45677788888776543


Q ss_pred             eccccccCCCCCcchHHHHhccCCC-ccEEEEeeeeeehhhccc--------------------CCCCCCc-----cccc
Q 014150          247 NVKNDQAMGPGNSCKLLRFFVHLPH-IRRLEIQSYFLKYLAIGN--------------------VPSRLPR-----PCVD  300 (430)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~--------------------~~~~~~~-----~~~~  300 (430)
                      ....            ...+..+++ |+.|.|+.+.+..+....                    ....++.     ..++
T Consensus       607 l~~l------------p~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~  674 (876)
T 4ecn_A          607 IEEI------------PEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGIN  674 (876)
T ss_dssp             CSCC------------CTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCC
T ss_pred             cccc------------hHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCC
Confidence            2211            111345555 666666655433211000                    0000110     1236


Q ss_pred             cceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCC
Q 014150          301 LNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPE  339 (430)
Q Consensus       301 L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~  339 (430)
                      |+.|+++.+...  .+  -..++..+++|+.|+|+.+.-
T Consensus       675 L~~L~Ls~N~L~--~l--p~~~~~~l~~L~~L~Ls~N~L  709 (876)
T 4ecn_A          675 ASTVTLSYNEIQ--KF--PTELFATGSPISTIILSNNLM  709 (876)
T ss_dssp             EEEEECCSSCCC--SC--CHHHHHTTCCCSEEECCSCCC
T ss_pred             cCEEEccCCcCC--cc--CHHHHccCCCCCEEECCCCcC
Confidence            777766443222  11  123456889999999887653

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.62  E-value=2.6e-09  Score=101.38  Aligned_cols=240  Identities=11%  Similarity=0.068  Sum_probs=129.4

Q ss_pred             cCceeEEEEeeeeecCC------CCCCCCC-CcceEEeeeEEechh---hHHHHhhcC-ccccceEeeccCCceEEE---
Q 014150          146 CQNLIHLELFNCLLKPP------STFKGFR-NLKSLDLQHITLSQD---VFENLISSS-PTLERLTLMNFDGFTHLN---  211 (430)
Q Consensus       146 ~~~L~~L~L~~~~~~~~------~~~~~~~-~L~~L~L~~~~~~~~---~l~~l~s~c-p~Le~L~l~~c~~~~~l~---  211 (430)
                      .++|++|+|++|.+...      ..+..++ +|++|+|+++.+++.   .+..++..+ ++|++|++++|.-. ...   
T Consensus        21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~-~~~~~~   99 (362)
T 3goz_A           21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLS-YKSSDE   99 (362)
T ss_dssp             CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG-GSCHHH
T ss_pred             CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCC-hHHHHH
Confidence            34577777777766542      2234566 677777777766543   233344443 77777777766421 111   


Q ss_pred             ----E-eC-CCcceEEEeccc-cce---e----ecc-CCCceEEEEEEEeeccccccCCCCCcchHHHHhccCC-CccEE
Q 014150          212 ----I-DA-PNLQFFDIGGVF-DDV---T----FEN-TFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLP-HIRRL  275 (430)
Q Consensus       212 ----i-~~-p~L~~L~l~~~~-~~~---~----~~~-~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~L~~L  275 (430)
                          + .. ++|+.|++.++. ...   .    +.. ..+|++|+++.+...+.       ....+...+...+ +|++|
T Consensus       100 l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~-------~~~~l~~~l~~~~~~L~~L  172 (362)
T 3goz_A          100 LVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIK-------SSDELIQILAAIPANVNSL  172 (362)
T ss_dssp             HHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGS-------CHHHHHHHHHTSCTTCCEE
T ss_pred             HHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHH-------HHHHHHHHHhcCCccccEe
Confidence                0 11 577777776532 111   1    223 35899999976543211       1234455566676 99999


Q ss_pred             EEeeeeeehhhcccCCCCCCccc-cccceeEEEEeeCChhhHHHHHHHHhc-CCCccEEEEeecCCCCcccccccceecc
Q 014150          276 EIQSYFLKYLAIGNVPSRLPRPC-VDLNYLSIRINFNDLEENLAALCLLRS-SPNLQELEMLARPEETGIGVLTNFWEVD  353 (430)
Q Consensus       276 ~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~ll~~-~p~L~~L~l~~~~~~~~~~~~~~~w~~~  353 (430)
                      +++.+.+......... ..-..+ .+|++|+++.+.........+...+.. +++|+.|+++++.-.........    .
T Consensus       173 ~Ls~n~l~~~~~~~l~-~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~----~  247 (362)
T 3goz_A          173 NLRGNNLASKNCAELA-KFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLK----L  247 (362)
T ss_dssp             ECTTSCGGGSCHHHHH-HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHH----H
T ss_pred             eecCCCCchhhHHHHH-HHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHH----H
Confidence            9998866422110000 000123 489999996554433344456666666 56999999999764311000000    0


Q ss_pred             cccccccCceEEEEEeee---cCccHHHHHHHHHccCCCcceEEEeecC
Q 014150          354 HWTSLFSQLRMVKIVGIS---GIRSELEFIKFVLSNSPVLETMTIKPAS  399 (430)
Q Consensus       354 ~~~~~~~~L~~v~i~~~~---~~~~e~~~~~~il~~~~~L~~l~i~~~~  399 (430)
                       .-..+++|+.+.+.+-.   -.......+...+.+.+.|+.+.++.+.
T Consensus       248 -~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~  295 (362)
T 3goz_A          248 -LKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE  295 (362)
T ss_dssp             -TTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred             -HHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence             11245789999888654   1112223333334455556666665544

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.61  E-value=2.1e-08  Score=92.63  Aligned_cols=228  Identities=16%  Similarity=0.106  Sum_probs=144.0

Q ss_pred             ccCCCcccccCceeEEEEeeeeecC-CC-CCCCCCCcceEEeeeEEechh-hHHHHhhcCccccceEeeccCCceEE---
Q 014150          137 YKVPSSLFLCQNLIHLELFNCLLKP-PS-TFKGFRNLKSLDLQHITLSQD-VFENLISSSPTLERLTLMNFDGFTHL---  210 (430)
Q Consensus       137 ~~lp~~~~~~~~L~~L~L~~~~~~~-~~-~~~~~~~L~~L~L~~~~~~~~-~l~~l~s~cp~Le~L~l~~c~~~~~l---  210 (430)
                      ..+|..+.  ++|++|+|+++.+.. +. .|.++++|+.|+|.++.+... .....+..+++|+.|++.++.- ..+   
T Consensus        20 ~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i-~~l~~~   96 (306)
T 2z66_A           20 TSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV-ITMSSN   96 (306)
T ss_dssp             SSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSE-EEEEEE
T ss_pred             ccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcc-ccChhh
Confidence            45665433  689999999998875 32 367999999999999987532 1123345799999999998742 222   


Q ss_pred             EEeCCCcceEEEeccc-c---c-eeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeehh
Q 014150          211 NIDAPNLQFFDIGGVF-D---D-VTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYL  285 (430)
Q Consensus       211 ~i~~p~L~~L~l~~~~-~---~-~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  285 (430)
                      -...++|+.|++.+.. .   . ..+..+++|+.|+++.+....           .....+..+++|++|.++.+.+...
T Consensus        97 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-----------~~~~~~~~l~~L~~L~l~~n~l~~~  165 (306)
T 2z66_A           97 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV-----------AFNGIFNGLSSLEVLKMAGNSFQEN  165 (306)
T ss_dssp             EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEE-----------CSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred             cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCc-----------cchhhcccCcCCCEEECCCCccccc
Confidence            2246899999997632 1   1 246678999999986543221           1123367889999999998876421


Q ss_pred             hcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCCCCcccccccceecccccccccCceEE
Q 014150          286 AIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNFWEVDHWTSLFSQLRMV  365 (430)
Q Consensus       286 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~w~~~~~~~~~~~L~~v  365 (430)
                         ..+..+ ..+++|++|+++.+.....    .+..+..+|+|+.|+++++.-....        .. .-..+.+|+.+
T Consensus       166 ---~~~~~~-~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~--------~~-~~~~l~~L~~L  228 (306)
T 2z66_A          166 ---FLPDIF-TELRNLTFLDLSQCQLEQL----SPTAFNSLSSLQVLNMSHNNFFSLD--------TF-PYKCLNSLQVL  228 (306)
T ss_dssp             ---EECSCC-TTCTTCCEEECTTSCCCEE----CTTTTTTCTTCCEEECTTSCCSBCC--------SG-GGTTCTTCCEE
T ss_pred             ---cchhHH-hhCcCCCEEECCCCCcCCc----CHHHhcCCCCCCEEECCCCccCccC--------hh-hccCcccCCEe
Confidence               111112 2567899999854322211    1234678999999999987643100        00 01135788888


Q ss_pred             EEEeeecCccHHHHHHHHHccC-CCcceEEEeecC
Q 014150          366 KIVGISGIRSELEFIKFVLSNS-PVLETMTIKPAS  399 (430)
Q Consensus       366 ~i~~~~~~~~e~~~~~~il~~~-~~L~~l~i~~~~  399 (430)
                      .+.+-.-...    ....+.+. ++|+.+.+..++
T Consensus       229 ~L~~N~l~~~----~~~~~~~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          229 DYSLNHIMTS----KKQELQHFPSSLAFLNLTQND  259 (306)
T ss_dssp             ECTTSCCCBC----SSSSCCCCCTTCCEEECTTCC
T ss_pred             ECCCCCCccc----CHHHHHhhhccCCEEEccCCC
Confidence            8774321110    01123445 489999998766

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.61  E-value=4.9e-08  Score=103.06  Aligned_cols=60  Identities=18%  Similarity=0.156  Sum_probs=39.5

Q ss_pred             CCceEEEEEecCCCcccCCCc--ccccCceeEEEEeeeeecC---CCCCCCCCCcceEEeeeEEec
Q 014150          122 SCVKEFILEIWKGQRYKVPSS--LFLCQNLIHLELFNCLLKP---PSTFKGFRNLKSLDLQHITLS  182 (430)
Q Consensus       122 ~~l~~l~l~~~~~~~~~lp~~--~~~~~~L~~L~L~~~~~~~---~~~~~~~~~L~~L~L~~~~~~  182 (430)
                      .++++|++..+... ..+|..  +..+++|++|+|++|.+..   +..+.++++|++|+|.++.+.
T Consensus        97 ~~L~~L~Ls~n~l~-~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~  161 (844)
T 3j0a_A           97 FHLFELRLYFCGLS-DAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF  161 (844)
T ss_dssp             SSCCCEECTTCCCS-SCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred             cccCEeeCcCCCCC-cccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence            56777776543221 112332  5567888899998887754   134678888888888888764

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.60  E-value=4.4e-09  Score=107.45  Aligned_cols=146  Identities=14%  Similarity=0.096  Sum_probs=87.1

Q ss_pred             CCceEEEEEecCCCcccCCC--cccccCceeEEEEeeeeec-CCCCCCCCCCcceEEeeeEEechhhHHHHhhcCcc-cc
Q 014150          122 SCVKEFILEIWKGQRYKVPS--SLFLCQNLIHLELFNCLLK-PPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPT-LE  197 (430)
Q Consensus       122 ~~l~~l~l~~~~~~~~~lp~--~~~~~~~L~~L~L~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~-Le  197 (430)
                      .++++|++..+...  .+|.  .+..+++|+.|++++|.+. .-+.+..+++|+.|+|.++.+.  .+..-+..++. |+
T Consensus       305 ~~L~~L~L~~n~l~--~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~~L~  380 (636)
T 4eco_A          305 EKIQIIYIGYNNLK--TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT--EIPANFCGFTEQVE  380 (636)
T ss_dssp             GTCCEEECCSSCCS--SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEE--ECCTTSEEECTTCC
T ss_pred             CCCCEEECCCCcCC--ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccc--cccHhhhhhcccCc
Confidence            57777777554332  6777  6777788888888888765 3226667788888888888766  33444667777 88


Q ss_pred             ceEeeccCCceEEE--Ee---CCCcceEEEecccc-c---eeec-------cCCCceEEEEEEEeeccccccCCCCCcch
Q 014150          198 RLTLMNFDGFTHLN--ID---APNLQFFDIGGVFD-D---VTFE-------NTFHLALVSIGLYVNVKNDQAMGPGNSCK  261 (430)
Q Consensus       198 ~L~l~~c~~~~~l~--i~---~p~L~~L~l~~~~~-~---~~~~-------~~p~L~~l~i~~~~~~~~~~~~~~~~~~~  261 (430)
                      .|.+.++.-. .+.  +.   .++|+.|++.++.- .   ..+.       .+++|+.|+++.+.....           
T Consensus       381 ~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~l-----------  448 (636)
T 4eco_A          381 NLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKF-----------  448 (636)
T ss_dssp             EEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSC-----------
T ss_pred             EEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcC-----------
Confidence            8888876421 111  11   13577777765321 1   1122       455677777765432211           


Q ss_pred             HHHHhccCCCccEEEEeeeeee
Q 014150          262 LLRFFVHLPHIRRLEIQSYFLK  283 (430)
Q Consensus       262 ~~~~l~~~~~L~~L~l~~~~~~  283 (430)
                      -..++..+++|++|+++.+.+.
T Consensus       449 p~~~~~~l~~L~~L~Ls~N~l~  470 (636)
T 4eco_A          449 PKELFSTGSPLSSINLMGNMLT  470 (636)
T ss_dssp             CTHHHHTTCCCSEEECCSSCCS
T ss_pred             CHHHHccCCCCCEEECCCCCCC
Confidence            0133455677777777766554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.60  E-value=6.9e-08  Score=83.01  Aligned_cols=79  Identities=15%  Similarity=0.172  Sum_probs=51.4

Q ss_pred             CCceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEe
Q 014150          122 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTL  201 (430)
Q Consensus       122 ~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l  201 (430)
                      ..++.+++......  .+| .+..+++|++|++++|.+.....+..+++|++|+|.++.+.+... ..++.+++|+.|.+
T Consensus        44 ~~L~~L~l~~n~i~--~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L  119 (197)
T 4ezg_A           44 NSLTYITLANINVT--DLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKI-PNLSGLTSLTLLDI  119 (197)
T ss_dssp             HTCCEEEEESSCCS--CCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGS-CCCTTCTTCCEEEC
T ss_pred             CCccEEeccCCCcc--ChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccC-hhhcCCCCCCEEEe
Confidence            46777777644322  445 456677888888888766665566677888888888777664322 22456777777777


Q ss_pred             ecc
Q 014150          202 MNF  204 (430)
Q Consensus       202 ~~c  204 (430)
                      .++
T Consensus       120 s~n  122 (197)
T 4ezg_A          120 SHS  122 (197)
T ss_dssp             CSS
T ss_pred             cCC
Confidence            765

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.60  E-value=2e-08  Score=101.85  Aligned_cols=119  Identities=15%  Similarity=0.148  Sum_probs=69.8

Q ss_pred             CCceEEEEEecCCCcccCC-CcccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccc
Q 014150          122 SCVKEFILEIWKGQRYKVP-SSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLER  198 (430)
Q Consensus       122 ~~l~~l~l~~~~~~~~~lp-~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~  198 (430)
                      ++++.|++..+..  ..++ ..+..+++|++|+|++|.+..  +..|.++++|+.|+|+++.+..- ...++..+++|+.
T Consensus        75 ~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~~  151 (597)
T 3oja_B           75 RQVELLNLNDLQI--EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL-PRGIFHNTPKLTT  151 (597)
T ss_dssp             CCCSEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCE
T ss_pred             CCCcEEECCCCCC--CCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCC-CHHHhccCCCCCE
Confidence            5677776643322  2233 245567778888888777654  33456778888888887776522 1233566778888


Q ss_pred             eEeeccCCceEEE---E-eCCCcceEEEecc-ccceeeccCCCceEEEEEE
Q 014150          199 LTLMNFDGFTHLN---I-DAPNLQFFDIGGV-FDDVTFENTFHLALVSIGL  244 (430)
Q Consensus       199 L~l~~c~~~~~l~---i-~~p~L~~L~l~~~-~~~~~~~~~p~L~~l~i~~  244 (430)
                      |.+.++.-. .+.   + ..++|+.|.+.++ ...+.+..+++|+.++++.
T Consensus       152 L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~  201 (597)
T 3oja_B          152 LSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSY  201 (597)
T ss_dssp             EECCSSCCC-BCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCS
T ss_pred             EEeeCCcCC-CCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhccc
Confidence            888766321 111   1 2367777777653 2333445566677666643

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.60  E-value=3.2e-08  Score=88.64  Aligned_cols=66  Identities=26%  Similarity=0.281  Sum_probs=45.7

Q ss_pred             ccCCCcccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccC
Q 014150          137 YKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFD  205 (430)
Q Consensus       137 ~~lp~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~  205 (430)
                      ..+|..+.  ++++.|+|+++.+..  +..+.++++|+.|+|.++.+... ....+..+++|+.|.+.++.
T Consensus        27 ~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~   94 (251)
T 3m19_A           27 DSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTL-SAGVFDDLTELGTLGLANNQ   94 (251)
T ss_dssp             SSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSC
T ss_pred             cccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCcc-CHhHhccCCcCCEEECCCCc
Confidence            34555443  578888888887765  34577888888888888876543 23345677888888887653

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.59  E-value=3.2e-08  Score=96.83  Aligned_cols=199  Identities=14%  Similarity=0.066  Sum_probs=137.5

Q ss_pred             CceeEEEEEeccCCCcchHHHHHHHHHhCCceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecCCCCCCCCCCcce
Q 014150           94 GPILKFKLSHRDLLGVSDIDRWILYMSRSCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKS  173 (430)
Q Consensus        94 ~~l~~l~l~~~~~~~~~~v~~wl~~~~~~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~  173 (430)
                      ..++.+.+......+..       ...-.+++.|++..+...  .++  +..+++|++|++++|.+... .+..+++|+.
T Consensus        64 ~~L~~L~Ls~n~l~~~~-------~~~l~~L~~L~Ls~N~l~--~~~--~~~l~~L~~L~L~~N~l~~l-~~~~l~~L~~  131 (457)
T 3bz5_A           64 TGLTKLICTSNNITTLD-------LSQNTNLTYLACDSNKLT--NLD--VTPLTKLTYLNCDTNKLTKL-DVSQNPLLTY  131 (457)
T ss_dssp             TTCSEEECCSSCCSCCC-------CTTCTTCSEEECCSSCCS--CCC--CTTCTTCCEEECCSSCCSCC-CCTTCTTCCE
T ss_pred             CCCCEEEccCCcCCeEc-------cccCCCCCEEECcCCCCc--eee--cCCCCcCCEEECCCCcCCee-cCCCCCcCCE
Confidence            45778888775443321       123367888888654432  233  56789999999999988763 3789999999


Q ss_pred             EEeeeEEechhhHHHHhhcCccccceEeeccCCceEEEE-eCCCcceEEEecc-ccceeeccCCCceEEEEEEEeecccc
Q 014150          174 LDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNI-DAPNLQFFDIGGV-FDDVTFENTFHLALVSIGLYVNVKND  251 (430)
Q Consensus       174 L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~i-~~p~L~~L~l~~~-~~~~~~~~~p~L~~l~i~~~~~~~~~  251 (430)
                      |++.++.+.+-.    ++.++.|+.|.+.++..+..+.+ ..++|+.|++.++ ...+.+..+++|+.++++.+..... 
T Consensus       132 L~l~~N~l~~l~----l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~l~~l~~L~~L~l~~N~l~~~-  206 (457)
T 3bz5_A          132 LNCARNTLTEID----VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITKL-  206 (457)
T ss_dssp             EECTTSCCSCCC----CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCCCTTCTTCCEEECCSSCCSCC-
T ss_pred             EECCCCccceec----cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceeccccCCCCCEEECcCCcCCee-
Confidence            999999876532    67899999999998865554433 2478999999864 3344577889999998875433211 


Q ss_pred             ccCCCCCcchHHHHhccCCCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccE
Q 014150          252 QAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQE  331 (430)
Q Consensus       252 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~  331 (430)
                                   -+..+++|+.|+++.+.+..++       + ..+++|+.|+++......     ++  ...+++|+.
T Consensus       207 -------------~l~~l~~L~~L~Ls~N~l~~ip-------~-~~l~~L~~L~l~~N~l~~-----~~--~~~l~~L~~  258 (457)
T 3bz5_A          207 -------------DLNQNIQLTFLDCSSNKLTEID-------V-TPLTQLTYFDCSVNPLTE-----LD--VSTLSKLTT  258 (457)
T ss_dssp             -------------CCTTCTTCSEEECCSSCCSCCC-------C-TTCTTCSEEECCSSCCSC-----CC--CTTCTTCCE
T ss_pred             -------------ccccCCCCCEEECcCCcccccC-------c-cccCCCCEEEeeCCcCCC-----cC--HHHCCCCCE
Confidence                         1577899999999988765321       1 156789999985443222     11  456788887


Q ss_pred             EEEeec
Q 014150          332 LEMLAR  337 (430)
Q Consensus       332 L~l~~~  337 (430)
                      |++..+
T Consensus       259 L~l~~n  264 (457)
T 3bz5_A          259 LHCIQT  264 (457)
T ss_dssp             EECTTC
T ss_pred             EeccCC
Confidence            776554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.58  E-value=1.2e-08  Score=92.68  Aligned_cols=58  Identities=22%  Similarity=0.201  Sum_probs=35.5

Q ss_pred             CceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccC
Q 014150          147 QNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFD  205 (430)
Q Consensus       147 ~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~  205 (430)
                      ++|++|+++++.+..  +..+.++++|++|+|.++.+..- ....+..+++|+.|.+.++.
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~   87 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNP   87 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCcc-CHHHccCCcCCCEEECCCCc
Confidence            467777777776543  23566677777777777765422 12234566777777777653

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.56  E-value=1.7e-08  Score=102.55  Aligned_cols=175  Identities=16%  Similarity=0.075  Sum_probs=91.3

Q ss_pred             ccCceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhh-HHHHhhcCccccceEeeccCCceEEE---EeCCCcceE
Q 014150          145 LCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDV-FENLISSSPTLERLTLMNFDGFTHLN---IDAPNLQFF  220 (430)
Q Consensus       145 ~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~-l~~l~s~cp~Le~L~l~~c~~~~~l~---i~~p~L~~L  220 (430)
                      .+++|+.|++++|....+..+..+++|+.|+|+++.+.... +...+..+++|++|.+.++. +..+.   ...++|+.|
T Consensus       326 ~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L  404 (606)
T 3vq2_A          326 DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHL  404 (606)
T ss_dssp             CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEE
T ss_pred             CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-cccchhhccCCCCCCee
Confidence            44555555555553222224445666666666666554321 23345567777777777654 22221   023667777


Q ss_pred             EEecccc----c-eeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeehhhcccCCCCCC
Q 014150          221 DIGGVFD----D-VTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLP  295 (430)
Q Consensus       221 ~l~~~~~----~-~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  295 (430)
                      .+.++.-    . ..+..+++|+.|+++.+.....           ....+.++++|++|+++++.+....   .+..+.
T Consensus       405 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~  470 (606)
T 3vq2_A          405 DFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKID-----------FDGIFLGLTSLNTLKMAGNSFKDNT---LSNVFA  470 (606)
T ss_dssp             ECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEEC-----------CTTTTTTCTTCCEEECTTCEEGGGE---ECSCCT
T ss_pred             ECCCCccCCccChhhhhccccCCEEECcCCCCCcc-----------chhhhcCCCCCCEEECCCCcCCCcc---hHHhhc
Confidence            7765321    1 2345667777777754432211           1123567788888888777654210   111111


Q ss_pred             ccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCC
Q 014150          296 RPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPE  339 (430)
Q Consensus       296 ~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~  339 (430)
                       .+++|+.|+++.+.....    .+..+..+++|+.|+++++.-
T Consensus       471 -~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l  509 (606)
T 3vq2_A          471 -NTTNLTFLDLSKCQLEQI----SWGVFDTLHRLQLLNMSHNNL  509 (606)
T ss_dssp             -TCTTCCEEECTTSCCCEE----CTTTTTTCTTCCEEECCSSCC
T ss_pred             -cCCCCCEEECCCCcCCcc----ChhhhcccccCCEEECCCCcC
Confidence             456777777743322110    123456677777777777643

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.56  E-value=5.3e-09  Score=97.29  Aligned_cols=214  Identities=14%  Similarity=0.085  Sum_probs=141.5

Q ss_pred             ccCceeEEEEeeeeecCC--CCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEEEeCCCcceEEE
Q 014150          145 LCQNLIHLELFNCLLKPP--STFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDI  222 (430)
Q Consensus       145 ~~~~L~~L~L~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~i~~p~L~~L~l  222 (430)
                      .+++|++|+|++|.+...  ..+..+++|+.|+|+++.+.+.. .  +..+++|+.|.++++. +..+. ..++|+.|.+
T Consensus        32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~--~~~l~~L~~L~Ls~n~-l~~l~-~~~~L~~L~l  106 (317)
T 3o53_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-D--LESLSTLRTLDLNNNY-VQELL-VGPSIETLHA  106 (317)
T ss_dssp             TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE-E--ETTCTTCCEEECCSSE-EEEEE-ECTTCCEEEC
T ss_pred             cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch-h--hhhcCCCCEEECcCCc-ccccc-CCCCcCEEEC
Confidence            457999999999988763  35779999999999999875432 1  7789999999999874 44443 4589999999


Q ss_pred             ecc-ccceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeehhhcccCCCCCCcccccc
Q 014150          223 GGV-FDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDL  301 (430)
Q Consensus       223 ~~~-~~~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L  301 (430)
                      .++ ...+....+++|+.|+++.+......           ...+..+++|++|+++.+.+......    .+...+++|
T Consensus       107 ~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~-----------~~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~~l~~L  171 (317)
T 3o53_A          107 ANNNISRVSCSRGQGKKNIYLANNKITMLR-----------DLDEGCRSRVQYLDLKLNEIDTVNFA----ELAASSDTL  171 (317)
T ss_dssp             CSSCCSEEEECCCSSCEEEECCSSCCCSGG-----------GBCTGGGSSEEEEECTTSCCCEEEGG----GGGGGTTTC
T ss_pred             CCCccCCcCccccCCCCEEECCCCCCCCcc-----------chhhhccCCCCEEECCCCCCCcccHH----HHhhccCcC
Confidence            874 33444456889999998765432110           11246789999999998876533221    122245789


Q ss_pred             ceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCCCCcccccccceecccccccccCceEEEEEeeecCccHHHHHH
Q 014150          302 NYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNFWEVDHWTSLFSQLRMVKIVGISGIRSELEFIK  381 (430)
Q Consensus       302 ~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~w~~~~~~~~~~~L~~v~i~~~~~~~~e~~~~~  381 (430)
                      ++|+++.+....     +. -...+++|+.|+++++.-..        .... . ..+++|+.+.+.+-.-..    + .
T Consensus       172 ~~L~L~~N~l~~-----~~-~~~~l~~L~~L~Ls~N~l~~--------l~~~-~-~~l~~L~~L~L~~N~l~~----l-~  230 (317)
T 3o53_A          172 EHLNLQYNFIYD-----VK-GQVVFAKLKTLDLSSNKLAF--------MGPE-F-QSAAGVTWISLRNNKLVL----I-E  230 (317)
T ss_dssp             CEEECTTSCCCE-----EE-CCCCCTTCCEEECCSSCCCE--------ECGG-G-GGGTTCSEEECTTSCCCE----E-C
T ss_pred             CEEECCCCcCcc-----cc-cccccccCCEEECCCCcCCc--------chhh-h-cccCcccEEECcCCcccc----h-h
Confidence            999985432221     11 12248999999999876431        0000 1 135778888776532211    1 1


Q ss_pred             HHHccCCCcceEEEeecC
Q 014150          382 FVLSNSPVLETMTIKPAS  399 (430)
Q Consensus       382 ~il~~~~~L~~l~i~~~~  399 (430)
                      ..+.+.++|+.+.+..+.
T Consensus       231 ~~~~~l~~L~~L~l~~N~  248 (317)
T 3o53_A          231 KALRFSQNLEHFDLRGNG  248 (317)
T ss_dssp             TTCCCCTTCCEEECTTCC
T ss_pred             hHhhcCCCCCEEEccCCC
Confidence            125778999999998766

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.56  E-value=5.5e-09  Score=96.95  Aligned_cols=175  Identities=15%  Similarity=0.064  Sum_probs=90.2

Q ss_pred             ccCceeEEEEeeeeecC--CCCC--CCCCCcceEEeeeEEechh--hHHHHhh-cCccccceEeeccCCceEEE----Ee
Q 014150          145 LCQNLIHLELFNCLLKP--PSTF--KGFRNLKSLDLQHITLSQD--VFENLIS-SSPTLERLTLMNFDGFTHLN----ID  213 (430)
Q Consensus       145 ~~~~L~~L~L~~~~~~~--~~~~--~~~~~L~~L~L~~~~~~~~--~l~~l~s-~cp~Le~L~l~~c~~~~~l~----i~  213 (430)
                      .+++|++|+|++|.+..  +..+  ..+++|+.|+|+++.+.+.  .+..+.. .+++|++|.+.++.-. .+.    -.
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~-~~~~~~~~~  171 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSL-NFSCEQVRV  171 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCC-CCCTTTCCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCc-cchHHHhcc
Confidence            35666666776666543  3333  5666677777766665432  1222111 1266777776655321 111    12


Q ss_pred             CCCcceEEEeccc-c-------ceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeehh
Q 014150          214 APNLQFFDIGGVF-D-------DVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYL  285 (430)
Q Consensus       214 ~p~L~~L~l~~~~-~-------~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  285 (430)
                      .++|+.|++.++. .       .+.+..+++|+.|+++.+....        .......++.++++|++|+++.+.+...
T Consensus       172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~--------~~~~~~~~~~~l~~L~~L~Ls~N~l~~~  243 (312)
T 1wwl_A          172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET--------PSGVCSALAAARVQLQGLDLSHNSLRDA  243 (312)
T ss_dssp             CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCC--------HHHHHHHHHHTTCCCSEEECTTSCCCSS
T ss_pred             CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcc--------hHHHHHHHHhcCCCCCEEECCCCcCCcc
Confidence            3566666666532 1       1223677888888776543210        0112234556778888888887765432


Q ss_pred             hcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCC
Q 014150          286 AIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPE  339 (430)
Q Consensus       286 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~  339 (430)
                      .    +......+++|+.|+++.+...     .++.-+.  ++|+.|+++++.-
T Consensus       244 ~----~~~~~~~l~~L~~L~Ls~N~l~-----~ip~~~~--~~L~~L~Ls~N~l  286 (312)
T 1wwl_A          244 A----GAPSCDWPSQLNSLNLSFTGLK-----QVPKGLP--AKLSVLDLSYNRL  286 (312)
T ss_dssp             C----CCSCCCCCTTCCEEECTTSCCS-----SCCSSCC--SEEEEEECCSSCC
T ss_pred             c----chhhhhhcCCCCEEECCCCccC-----hhhhhcc--CCceEEECCCCCC
Confidence            1    0011112467888777433211     1211111  6788888887653

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.56  E-value=5.5e-09  Score=97.81  Aligned_cols=117  Identities=10%  Similarity=-0.053  Sum_probs=56.1

Q ss_pred             hccCCCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCCCCcccc
Q 014150          266 FVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGV  345 (430)
Q Consensus       266 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~  345 (430)
                      +..+++|++|+++++.+......    .+ ..+++|+.|+++.+...     .++.-+..+++|+.|+++++.-....  
T Consensus       213 l~~l~~L~~L~L~~N~l~~~~~~----~~-~~l~~L~~L~L~~N~l~-----~lp~~l~~l~~L~~L~l~~N~l~~~~--  280 (332)
T 2ft3_A          213 LLRYSKLYRLGLGHNQIRMIENG----SL-SFLPTLRELHLDNNKLS-----RVPAGLPDLKLLQVVYLHTNNITKVG--  280 (332)
T ss_dssp             STTCTTCSCCBCCSSCCCCCCTT----GG-GGCTTCCEEECCSSCCC-----BCCTTGGGCTTCCEEECCSSCCCBCC--
T ss_pred             hcCCCCCCEEECCCCcCCcCChh----Hh-hCCCCCCEEECCCCcCe-----ecChhhhcCccCCEEECCCCCCCccC--
Confidence            45677777787777655422110    11 14567777777443221     13334567788888888776533100  


Q ss_pred             cccceecccccccccCceEEEEEeeecCccHHHHHHHHHccCCCcceEEEee
Q 014150          346 LTNFWEVDHWTSLFSQLRMVKIVGISGIRSELEFIKFVLSNSPVLETMTIKP  397 (430)
Q Consensus       346 ~~~~w~~~~~~~~~~~L~~v~i~~~~~~~~e~~~~~~il~~~~~L~~l~i~~  397 (430)
                       ...+...........|+.+.+.+-.....  ......+.+.+.|+.+.+..
T Consensus       281 -~~~~~~~~~~~~~~~l~~L~l~~N~~~~~--~~~~~~~~~l~~L~~l~l~~  329 (332)
T 2ft3_A          281 -VNDFCPVGFGVKRAYYNGISLFNNPVPYW--EVQPATFRCVTDRLAIQFGN  329 (332)
T ss_dssp             -TTSSSCSSCCSSSCCBSEEECCSSSSCGG--GSCGGGGTTBCCSTTEEC--
T ss_pred             -hhHccccccccccccccceEeecCccccc--ccCcccccccchhhhhhccc
Confidence             00000000111245666666665332111  11122355667777766643

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.56  E-value=2.3e-08  Score=91.72  Aligned_cols=166  Identities=16%  Similarity=0.132  Sum_probs=96.9

Q ss_pred             CCceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEe
Q 014150          122 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTL  201 (430)
Q Consensus       122 ~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l  201 (430)
                      ..++.+.+..+..  ..++. +..+++|+.|++++|.+.....+..+++|+.|+|.++.+.+-  .. +..+++|+.|.+
T Consensus        46 ~~L~~L~l~~~~i--~~~~~-~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~L  119 (291)
T 1h6t_A           46 NSIDQIIANNSDI--KSVQG-IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDL--SS-LKDLKKLKSLSL  119 (291)
T ss_dssp             HTCCEEECTTSCC--CCCTT-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCG--GG-GTTCTTCCEEEC
T ss_pred             CcccEEEccCCCc--ccChh-HhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCC--hh-hccCCCCCEEEC
Confidence            4677776654322  23333 566788899999888877644477888899999988887542  22 667888888888


Q ss_pred             eccCCceEEEEeCCCcceEEEeccccceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeee
Q 014150          202 MNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYF  281 (430)
Q Consensus       202 ~~c~~~~~l~i~~p~L~~L~l~~~~~~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~  281 (430)
                      .++.- ..+                  ..+..+++|+.|+++.+....            + ..+..+++|++|+++++.
T Consensus       120 ~~n~i-~~~------------------~~l~~l~~L~~L~l~~n~l~~------------~-~~l~~l~~L~~L~L~~N~  167 (291)
T 1h6t_A          120 EHNGI-SDI------------------NGLVHLPQLESLYLGNNKITD------------I-TVLSRLTKLDTLSLEDNQ  167 (291)
T ss_dssp             TTSCC-CCC------------------GGGGGCTTCCEEECCSSCCCC------------C-GGGGGCTTCSEEECCSSC
T ss_pred             CCCcC-CCC------------------hhhcCCCCCCEEEccCCcCCc------------c-hhhccCCCCCEEEccCCc
Confidence            87632 111                  013345666666665432210            0 224566777777776665


Q ss_pred             eehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecC
Q 014150          282 LKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARP  338 (430)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~  338 (430)
                      +.....      + ..+++|++|+++.+....     +. -+..+++|+.|++.++.
T Consensus       168 l~~~~~------l-~~l~~L~~L~L~~N~i~~-----l~-~l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          168 ISDIVP------L-AGLTKLQNLYLSKNHISD-----LR-ALAGLKNLDVLELFSQE  211 (291)
T ss_dssp             CCCCGG------G-TTCTTCCEEECCSSCCCB-----CG-GGTTCTTCSEEEEEEEE
T ss_pred             cccchh------h-cCCCccCEEECCCCcCCC-----Ch-hhccCCCCCEEECcCCc
Confidence            432211      1 135566766664332211     12 25667777777777653

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.55  E-value=1.2e-08  Score=100.68  Aligned_cols=214  Identities=14%  Similarity=0.080  Sum_probs=140.3

Q ss_pred             ccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEEEeCCCcceEEE
Q 014150          145 LCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDI  222 (430)
Q Consensus       145 ~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~i~~p~L~~L~l  222 (430)
                      .+++|+.|+|++|.+..  +..+..+++|+.|+|+++.+.+.. .  +..+++|+.|+++++. +..+. ..++|+.|.+
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~--l~~l~~L~~L~Ls~N~-l~~l~-~~~~L~~L~L  106 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-D--LESLSTLRTLDLNNNY-VQELL-VGPSIETLHA  106 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEE-E--CTTCTTCCEEECCSSE-EEEEE-ECTTCCEEEC
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCc-c--cccCCCCCEEEecCCc-CCCCC-CCCCcCEEEC
Confidence            34699999999998876  346889999999999999876432 2  7789999999999874 44443 3489999999


Q ss_pred             ecc-ccceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeehhhcccCCCCCCcccccc
Q 014150          223 GGV-FDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDL  301 (430)
Q Consensus       223 ~~~-~~~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L  301 (430)
                      .++ ...+....+++|+.|+++.+.....           ....+..+++|+.|+++.+.+......    .+...+++|
T Consensus       107 ~~N~l~~~~~~~l~~L~~L~L~~N~l~~~-----------~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~l~~~l~~L  171 (487)
T 3oja_A          107 ANNNISRVSCSRGQGKKNIYLANNKITML-----------RDLDEGCRSRVQYLDLKLNEIDTVNFA----ELAASSDTL  171 (487)
T ss_dssp             CSSCCCCEEECCCSSCEEEECCSSCCCSG-----------GGBCGGGGSSEEEEECTTSCCCEEEGG----GGGGGTTTC
T ss_pred             cCCcCCCCCccccCCCCEEECCCCCCCCC-----------CchhhcCCCCCCEEECCCCCCCCcChH----HHhhhCCcc
Confidence            874 3344445678999999876543211           112256789999999998876532211    122246789


Q ss_pred             ceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCCCCcccccccceecccccccccCceEEEEEeeecCccHHHHHH
Q 014150          302 NYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNFWEVDHWTSLFSQLRMVKIVGISGIRSELEFIK  381 (430)
Q Consensus       302 ~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~w~~~~~~~~~~~L~~v~i~~~~~~~~e~~~~~  381 (430)
                      +.|+++.+.....     + -...+|+|+.|+++++.-.+.        .. .. ..+++|+.+.+.+-.-..     +.
T Consensus       172 ~~L~Ls~N~l~~~-----~-~~~~l~~L~~L~Ls~N~l~~~--------~~-~~-~~l~~L~~L~Ls~N~l~~-----lp  230 (487)
T 3oja_A          172 EHLNLQYNFIYDV-----K-GQVVFAKLKTLDLSSNKLAFM--------GP-EF-QSAAGVTWISLRNNKLVL-----IE  230 (487)
T ss_dssp             CEEECTTSCCCEE-----E-CCCCCTTCCEEECCSSCCCEE--------CG-GG-GGGTTCSEEECTTSCCCE-----EC
T ss_pred             cEEecCCCccccc-----c-ccccCCCCCEEECCCCCCCCC--------CH-hH-cCCCCccEEEecCCcCcc-----cc
Confidence            9999954332211     1 123589999999998764310        00 01 135677777776422111     11


Q ss_pred             HHHccCCCcceEEEeecC
Q 014150          382 FVLSNSPVLETMTIKPAS  399 (430)
Q Consensus       382 ~il~~~~~L~~l~i~~~~  399 (430)
                      ..+.+.++|+.+.+..++
T Consensus       231 ~~l~~l~~L~~L~l~~N~  248 (487)
T 3oja_A          231 KALRFSQNLEHFDLRGNG  248 (487)
T ss_dssp             TTCCCCTTCCEEECTTCC
T ss_pred             hhhccCCCCCEEEcCCCC
Confidence            124667888888887655

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.54  E-value=4e-08  Score=91.76  Aligned_cols=177  Identities=13%  Similarity=0.027  Sum_probs=76.9

Q ss_pred             CCcccccCceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCce-EEE----EeC
Q 014150          140 PSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFT-HLN----IDA  214 (430)
Q Consensus       140 p~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~-~l~----i~~  214 (430)
                      |..+..+++|++|++++|.+..-+. ..+++|++|++.++.+..- ....+..+++|+.|.+.++.-.. .+.    -..
T Consensus        93 ~~~~~~l~~L~~L~Ls~n~l~~l~~-~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l  170 (330)
T 1xku_A           93 PGAFAPLVKLERLYLSKNQLKELPE-KMPKTLQELRVHENEITKV-RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM  170 (330)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSBCCS-SCCTTCCEEECCSSCCCBB-CHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGC
T ss_pred             HHHhcCCCCCCEEECCCCcCCccCh-hhcccccEEECCCCccccc-CHhHhcCCccccEEECCCCcCCccCcChhhccCC
Confidence            3334445555555555554432111 1125555555555544322 12334455666666655442110 000    012


Q ss_pred             CCcceEEEeccc-cceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeehhhcccCCCC
Q 014150          215 PNLQFFDIGGVF-DDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSR  293 (430)
Q Consensus       215 p~L~~L~l~~~~-~~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~  293 (430)
                      ++|+.|.+.++. ..+...-.++|+.|+++.+.....           ....+..+++|++|+++.+.+......    .
T Consensus       171 ~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~-----------~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~  235 (330)
T 1xku_A          171 KKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKV-----------DAASLKGLNNLAKLGLSFNSISAVDNG----S  235 (330)
T ss_dssp             TTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEE-----------CTGGGTTCTTCCEEECCSSCCCEECTT----T
T ss_pred             CCcCEEECCCCccccCCccccccCCEEECCCCcCCcc-----------CHHHhcCCCCCCEEECCCCcCceeChh----h
Confidence            455555554421 111111124555555543221100           012245666777777766654321110    1


Q ss_pred             CCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCC
Q 014150          294 LPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPE  339 (430)
Q Consensus       294 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~  339 (430)
                      + ..+++|+.|+++.+...     .++..+..+++|+.|++.++.-
T Consensus       236 ~-~~l~~L~~L~L~~N~l~-----~lp~~l~~l~~L~~L~l~~N~i  275 (330)
T 1xku_A          236 L-ANTPHLRELHLNNNKLV-----KVPGGLADHKYIQVVYLHNNNI  275 (330)
T ss_dssp             G-GGSTTCCEEECCSSCCS-----SCCTTTTTCSSCCEEECCSSCC
T ss_pred             c-cCCCCCCEEECCCCcCc-----cCChhhccCCCcCEEECCCCcC
Confidence            1 13456666666433211     1333355667777777766543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.53  E-value=1.2e-07  Score=79.17  Aligned_cols=137  Identities=19%  Similarity=0.122  Sum_probs=93.5

Q ss_pred             CCceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEe
Q 014150          122 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTL  201 (430)
Q Consensus       122 ~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l  201 (430)
                      ++++++++..+......+|..+..+++|+.|++++|.+.....+..+++|+.|+|+++.+.+. +..++..+++|+.|++
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L  102 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLTHLNL  102 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCCEEEC
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchH-HHHHHhhCCCCCEEec
Confidence            568888876554322367777778899999999999887666677899999999999988654 5666777999999999


Q ss_pred             eccCCceEEEEeCCCcceEEEeccccceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeee
Q 014150          202 MNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYF  281 (430)
Q Consensus       202 ~~c~~~~~l~i~~p~L~~L~l~~~~~~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~  281 (430)
                      .++.- ..+               .....+..+++|+.|+++.+.....        .......+..+++|++|++..+.
T Consensus       103 s~N~l-~~~---------------~~~~~l~~l~~L~~L~l~~N~l~~~--------~~~~~~~~~~l~~L~~L~l~~n~  158 (168)
T 2ell_A          103 SGNKL-KDI---------------STLEPLKKLECLKSLDLFNCEVTNL--------NDYRESVFKLLPQLTYLDGYDRE  158 (168)
T ss_dssp             BSSSC-CSS---------------GGGGGGSSCSCCCEEECCSSGGGTS--------TTHHHHHHTTCSSCCEETTEETT
T ss_pred             cCCcc-Ccc---------------hhHHHHhcCCCCCEEEeeCCcCcch--------HHHHHHHHHhCccCcEecCCCCC
Confidence            98742 111               0112345677788887765432211        01112356788888888888765


Q ss_pred             ee
Q 014150          282 LK  283 (430)
Q Consensus       282 ~~  283 (430)
                      ..
T Consensus       159 ~~  160 (168)
T 2ell_A          159 DQ  160 (168)
T ss_dssp             SC
T ss_pred             hh
Confidence            43

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.53  E-value=1.2e-07  Score=100.16  Aligned_cols=119  Identities=16%  Similarity=0.076  Sum_probs=62.5

Q ss_pred             CCceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccce
Q 014150          122 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERL  199 (430)
Q Consensus       122 ~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L  199 (430)
                      .+++.+++...... ...|..+..+++|+.|+|++|.+..  +..|.++++|+.|+|+++.+... ....+..+++|+.|
T Consensus       266 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L  343 (844)
T 3j0a_A          266 SSVRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGEL-YSSNFYGLPKVAYI  343 (844)
T ss_dssp             SCCCEEECTTCCCC-EECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCC-CSCSCSSCTTCCEE
T ss_pred             CCccEEECCCCccc-ccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCcc-CHHHhcCCCCCCEE
Confidence            46667666432211 1123334456777777777776543  34566777777777777765422 12234566777777


Q ss_pred             EeeccCCceEEE----EeCCCcceEEEeccccceeeccCCCceEEEEEE
Q 014150          200 TLMNFDGFTHLN----IDAPNLQFFDIGGVFDDVTFENTFHLALVSIGL  244 (430)
Q Consensus       200 ~l~~c~~~~~l~----i~~p~L~~L~l~~~~~~~~~~~~p~L~~l~i~~  244 (430)
                      .+.++. +..+.    -..++|+.|.+.++.-. .+..+++|+.++++.
T Consensus       344 ~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~L~~L~l~~  390 (844)
T 3j0a_A          344 DLQKNH-IAIIQDQTFKFLEKLQTLDLRDNALT-TIHFIPSIPDIFLSG  390 (844)
T ss_dssp             ECCSCC-CCCCCSSCSCSCCCCCEEEEETCCSC-CCSSCCSCSEEEEES
T ss_pred             ECCCCC-CCccChhhhcCCCCCCEEECCCCCCC-cccCCCCcchhccCC
Confidence            776552 11111    11356666666553211 122355555555543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.53  E-value=4e-08  Score=87.28  Aligned_cols=170  Identities=12%  Similarity=0.070  Sum_probs=99.1

Q ss_pred             CceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEE-echhhHHHHhhcCccccceEeeccCCceEEE----EeCCCcce
Q 014150          147 QNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHIT-LSQDVFENLISSSPTLERLTLMNFDGFTHLN----IDAPNLQF  219 (430)
Q Consensus       147 ~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~-~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~----i~~p~L~~  219 (430)
                      ++|+.|+++++.+..  +..|.++++|++|+|.++. +..- -...+..+++|++|.+.+|..+..+.    -..++|+.
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i-~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~  109 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQL-ESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF  109 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEE-CTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCccee-CHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence            478888888887654  3357778888888888875 4321 11235678888888888765555443    13467777


Q ss_pred             EEEeccc-cce-eeccCCCce---EEEEEEE-eeccccccCCCCCcchHHHHhccCCCcc-EEEEeeeeeehhhcccCCC
Q 014150          220 FDIGGVF-DDV-TFENTFHLA---LVSIGLY-VNVKNDQAMGPGNSCKLLRFFVHLPHIR-RLEIQSYFLKYLAIGNVPS  292 (430)
Q Consensus       220 L~l~~~~-~~~-~~~~~p~L~---~l~i~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~~~~  292 (430)
                      |.+.++. ..+ .+..+++|+   .++++.+ ......           ...+.++++|+ +|+++.+.+..+...    
T Consensus       110 L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~-----------~~~~~~l~~L~~~L~l~~n~l~~i~~~----  174 (239)
T 2xwt_C          110 LGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIP-----------VNAFQGLCNETLTLKLYNNGFTSVQGY----  174 (239)
T ss_dssp             EEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEEC-----------TTTTTTTBSSEEEEECCSCCCCEECTT----
T ss_pred             EeCCCCCCccccccccccccccccEEECCCCcchhhcC-----------cccccchhcceeEEEcCCCCCcccCHh----
Confidence            7777632 111 145566666   7777654 211100           12256788888 888887765432111    


Q ss_pred             CCCccccccceeEEEEee-CChhhHHHHHHHHhcC-CCccEEEEeecC
Q 014150          293 RLPRPCVDLNYLSIRINF-NDLEENLAALCLLRSS-PNLQELEMLARP  338 (430)
Q Consensus       293 ~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~ll~~~-p~L~~L~l~~~~  338 (430)
                       .. ..++|++|++..+. ...  +  -...+..+ ++|+.|+++.+.
T Consensus       175 -~~-~~~~L~~L~L~~n~~l~~--i--~~~~~~~l~~~L~~L~l~~N~  216 (239)
T 2xwt_C          175 -AF-NGTKLDAVYLNKNKYLTV--I--DKDAFGGVYSGPSLLDVSQTS  216 (239)
T ss_dssp             -TT-TTCEEEEEECTTCTTCCE--E--CTTTTTTCSBCCSEEECTTCC
T ss_pred             -hc-CCCCCCEEEcCCCCCccc--C--CHHHhhccccCCcEEECCCCc
Confidence             11 11467777774331 111  0  01245667 888888888764

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.52  E-value=4e-09  Score=100.02  Aligned_cols=39  Identities=15%  Similarity=-0.058  Sum_probs=20.5

Q ss_pred             ccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecC
Q 014150          300 DLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARP  338 (430)
Q Consensus       300 ~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~  338 (430)
                      +|++|+++.+.........+..+++.+++|+.|+++++.
T Consensus       226 ~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~  264 (362)
T 3goz_A          226 HVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI  264 (362)
T ss_dssp             TCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred             CceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence            566666644433332333444555666666666666654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.52  E-value=1.5e-08  Score=94.00  Aligned_cols=193  Identities=18%  Similarity=0.129  Sum_probs=121.8

Q ss_pred             HhCCceEEEEEecCCCcccCCCcc--cccCceeEEEEeeeeecC-CCCCCCC-----CCcceEEeeeEEechhhHHHHhh
Q 014150          120 SRSCVKEFILEIWKGQRYKVPSSL--FLCQNLIHLELFNCLLKP-PSTFKGF-----RNLKSLDLQHITLSQDVFENLIS  191 (430)
Q Consensus       120 ~~~~l~~l~l~~~~~~~~~lp~~~--~~~~~L~~L~L~~~~~~~-~~~~~~~-----~~L~~L~L~~~~~~~~~l~~l~s  191 (430)
                      .-.++++|++...... ..+|..+  ..+++|++|+|++|.+.. +..+..+     ++|++|+|+++.+... ....+.
T Consensus        93 ~l~~L~~L~L~~n~l~-~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~-~~~~~~  170 (312)
T 1wwl_A           93 GISGLQELTLENLEVT-GTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNF-SCEQVR  170 (312)
T ss_dssp             TTSCCCEEEEEEEBCB-SCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCC-CTTTCC
T ss_pred             CcCCccEEEccCCccc-chhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccc-hHHHhc
Confidence            3468888888765432 2455554  567899999999988765 2223333     8999999999887543 223466


Q ss_pred             cCccccceEeeccCCceEE----E---EeCCCcceEEEeccccc-------eeeccCCCceEEEEEEEeeccccccCCCC
Q 014150          192 SSPTLERLTLMNFDGFTHL----N---IDAPNLQFFDIGGVFDD-------VTFENTFHLALVSIGLYVNVKNDQAMGPG  257 (430)
Q Consensus       192 ~cp~Le~L~l~~c~~~~~l----~---i~~p~L~~L~l~~~~~~-------~~~~~~p~L~~l~i~~~~~~~~~~~~~~~  257 (430)
                      .+++|++|.++++.-...+    .   -..++|+.|.+.++.-.       ..+..+++|+.|+++.+......+     
T Consensus       171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-----  245 (312)
T 1wwl_A          171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG-----  245 (312)
T ss_dssp             CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCC-----
T ss_pred             cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccc-----
Confidence            7899999999987532111    0   23478899988764211       123466889999887554321100     


Q ss_pred             CcchHHHHhccCCCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeec
Q 014150          258 NSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLAR  337 (430)
Q Consensus       258 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~  337 (430)
                           ...+..+++|++|+++.+.+..     .+..+   +++|++|+++.....     +++. +..+|+|+.|++.++
T Consensus       246 -----~~~~~~l~~L~~L~Ls~N~l~~-----ip~~~---~~~L~~L~Ls~N~l~-----~~p~-~~~l~~L~~L~L~~N  306 (312)
T 1wwl_A          246 -----APSCDWPSQLNSLNLSFTGLKQ-----VPKGL---PAKLSVLDLSYNRLD-----RNPS-PDELPQVGNLSLKGN  306 (312)
T ss_dssp             -----CSCCCCCTTCCEEECTTSCCSS-----CCSSC---CSEEEEEECCSSCCC-----SCCC-TTTSCEEEEEECTTC
T ss_pred             -----hhhhhhcCCCCEEECCCCccCh-----hhhhc---cCCceEEECCCCCCC-----CChh-HhhCCCCCEEeccCC
Confidence                 0113456889999998876642     11122   258888888544322     1233 677888999988876


Q ss_pred             C
Q 014150          338 P  338 (430)
Q Consensus       338 ~  338 (430)
                      .
T Consensus       307 ~  307 (312)
T 1wwl_A          307 P  307 (312)
T ss_dssp             T
T ss_pred             C
Confidence            5

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.51  E-value=6.3e-08  Score=87.86  Aligned_cols=97  Identities=14%  Similarity=0.069  Sum_probs=64.6

Q ss_pred             cccCceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEEE----eCCCcce
Q 014150          144 FLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNI----DAPNLQF  219 (430)
Q Consensus       144 ~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~i----~~p~L~~  219 (430)
                      ...++|+.|.++++.+....++..+++|+.|+|.++.+.+-  . .+..+++|++|.+.++.- ..+.-    ..++|+.
T Consensus        38 ~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~  113 (272)
T 3rfs_A           38 NELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI--S-ALKELTNLTYLILTGNQL-QSLPNGVFDKLTNLKE  113 (272)
T ss_dssp             HHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCC--G-GGTTCTTCCEEECTTSCC-CCCCTTTTTTCTTCCE
T ss_pred             ccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCc--h-hhcCCCCCCEEECCCCcc-CccChhHhcCCcCCCE
Confidence            34688999999999888777788999999999999987652  2 467899999999998742 21110    1255666


Q ss_pred             EEEeccc-cc---eeeccCCCceEEEEEE
Q 014150          220 FDIGGVF-DD---VTFENTFHLALVSIGL  244 (430)
Q Consensus       220 L~l~~~~-~~---~~~~~~p~L~~l~i~~  244 (430)
                      |++.++. ..   ..+..+++|+.|+++.
T Consensus       114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  142 (272)
T 3rfs_A          114 LVLVENQLQSLPDGVFDKLTNLTYLNLAH  142 (272)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             EECCCCcCCccCHHHhccCCCCCEEECCC
Confidence            6555421 11   1134455555555543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.51  E-value=5.6e-08  Score=99.24  Aligned_cols=123  Identities=11%  Similarity=0.133  Sum_probs=83.9

Q ss_pred             CCceEEEEEecCCCcc----------------cCCCccc--ccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEE-
Q 014150          122 SCVKEFILEIWKGQRY----------------KVPSSLF--LCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHIT-  180 (430)
Q Consensus       122 ~~l~~l~l~~~~~~~~----------------~lp~~~~--~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~-  180 (430)
                      .+++.|++........                .+|..+.  .+++|++|+|++|.+..  |..+.++++|+.|+|+++. 
T Consensus       206 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~  285 (636)
T 4eco_A          206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG  285 (636)
T ss_dssp             TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTT
T ss_pred             cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCC
Confidence            6889999876543210                1898888  89999999999997654  6678899999999999998 


Q ss_pred             echhhHHHHh------hcCccccceEeeccCCceEEEE-----eCCCcceEEEecccc--ce-eeccCCCceEEEEEEE
Q 014150          181 LSQDVFENLI------SSSPTLERLTLMNFDGFTHLNI-----DAPNLQFFDIGGVFD--DV-TFENTFHLALVSIGLY  245 (430)
Q Consensus       181 ~~~~~l~~l~------s~cp~Le~L~l~~c~~~~~l~i-----~~p~L~~L~l~~~~~--~~-~~~~~p~L~~l~i~~~  245 (430)
                      +++..+..-+      ..+++|++|.+.++.-. .+.-     ..++|+.|.+.++.-  .+ .+..+++|+.|+++.+
T Consensus       286 l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N  363 (636)
T 4eco_A          286 ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYN  363 (636)
T ss_dssp             SCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSS
T ss_pred             CccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCC
Confidence            7762233323      34689999999877432 2211     236778887765321  11 4456667777776544

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.50  E-value=6.9e-08  Score=91.04  Aligned_cols=166  Identities=15%  Similarity=0.098  Sum_probs=88.3

Q ss_pred             CCCCcceEEeeeEEe--------chhhHHHHhhcCccccceEeeccCCceEEEEeCCCcceEEEecccc------ceeec
Q 014150          167 GFRNLKSLDLQHITL--------SQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDIGGVFD------DVTFE  232 (430)
Q Consensus       167 ~~~~L~~L~L~~~~~--------~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~i~~p~L~~L~l~~~~~------~~~~~  232 (430)
                      .+|+|+.|.+..+..        +..++..++..+|+|++|.|.++.+..--.+..++|++|.+..+..      .+...
T Consensus       137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~~~~~L~~L~L~~~~l~~~~l~~l~~~  216 (362)
T 2ra8_A          137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGS  216 (362)
T ss_dssp             HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSCBCTTCSEEEEECSBCCHHHHHHHHHS
T ss_pred             hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceeccccCCCCcEEEEecCCCChHHHHHHHHc
Confidence            356666666544321        1124678888999999999987743321113468888888864321      11123


Q ss_pred             cCCCceEEEEEEEeeccccccCCCCCcchHHHHh--ccCCCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEee
Q 014150          233 NTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFF--VHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINF  310 (430)
Q Consensus       233 ~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  310 (430)
                      .+|+|+.|++..........    .....+...+  ..+|+|++|.|.++.+...... .....+ .+++|++|+|+.+.
T Consensus       217 ~lp~L~~L~L~~~~~~~~~~----~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~-~la~a~-~~~~L~~LdLs~n~  290 (362)
T 2ra8_A          217 DLPNLEKLVLYVGVEDYGFD----GDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVE-MFLESD-ILPQLETMDISAGV  290 (362)
T ss_dssp             BCTTCCEEEEECBCGGGTCC----SCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHH-HHHHCS-SGGGCSEEECCSSC
T ss_pred             cCCCCcEEEEeccccccccc----hhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHH-HHHhCc-cCCCCCEEECCCCC
Confidence            67888888775321110000    0011112222  2468888888876543210000 000111 46678888886544


Q ss_pred             CChhhHHHHHHHHhcCCCccEEEEeecC
Q 014150          311 NDLEENLAALCLLRSSPNLQELEMLARP  338 (430)
Q Consensus       311 ~~~~~~~~l~~ll~~~p~L~~L~l~~~~  338 (430)
                      ........+...++++|+|+.|+|+.+.
T Consensus       291 L~d~G~~~L~~~L~~l~~L~~L~L~~n~  318 (362)
T 2ra8_A          291 LTDEGARLLLDHVDKIKHLKFINMKYNY  318 (362)
T ss_dssp             CBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred             CChHHHHHHHhhcccCCcceEEECCCCc
Confidence            4333333444445667888888887653

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.49  E-value=2.4e-08  Score=91.58  Aligned_cols=64  Identities=25%  Similarity=0.186  Sum_probs=28.3

Q ss_pred             hccCCCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecC
Q 014150          266 FVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARP  338 (430)
Q Consensus       266 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~  338 (430)
                      +.++++|++|.++++.+..+..     .....+++|+.|+++.+....  +  -...+..+++|+.|+++++.
T Consensus       120 ~~~l~~L~~L~L~~N~l~~~~~-----~~~~~l~~L~~L~L~~N~l~~--l--~~~~~~~l~~L~~L~L~~N~  183 (290)
T 1p9a_G          120 LRGLGELQELYLKGNELKTLPP-----GLLTPTPKLEKLSLANNNLTE--L--PAGLLNGLENLDTLLLQENS  183 (290)
T ss_dssp             TTTCTTCCEEECTTSCCCCCCT-----TTTTTCTTCCEEECTTSCCSC--C--CTTTTTTCTTCCEEECCSSC
T ss_pred             HcCCCCCCEEECCCCCCCccCh-----hhcccccCCCEEECCCCcCCc--c--CHHHhcCcCCCCEEECCCCc
Confidence            3455666666666554432111     111134456655553221110  0  01234556666666666554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.49  E-value=9.5e-08  Score=79.56  Aligned_cols=96  Identities=8%  Similarity=0.162  Sum_probs=70.0

Q ss_pred             ccCCCcccccCceeEEEEeeeeecCC--CCCCCCCCcceEEeeeEE-echhhHHHHhhc---CccccceEeeccCCceEE
Q 014150          137 YKVPSSLFLCQNLIHLELFNCLLKPP--STFKGFRNLKSLDLQHIT-LSQDVFENLISS---SPTLERLTLMNFDGFTHL  210 (430)
Q Consensus       137 ~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~~~~L~~L~L~~~~-~~~~~l~~l~s~---cp~Le~L~l~~c~~~~~l  210 (430)
                      ..+|......-.|+.|++++|.+.+.  ..+.+|++|++|+|.+|. ++|..+..+...   |++|++|+|++|..++. 
T Consensus        51 ~~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD-  129 (176)
T 3e4g_A           51 NHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD-  129 (176)
T ss_dssp             GGSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH-
T ss_pred             ccCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH-
Confidence            45666444446799999999986552  234689999999999997 899988888763   78999999999987653 


Q ss_pred             EEeCCCcceEEEeccccceeeccCCCceEEEEEEEeec
Q 014150          211 NIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNV  248 (430)
Q Consensus       211 ~i~~p~L~~L~l~~~~~~~~~~~~p~L~~l~i~~~~~~  248 (430)
                                     .+-..+..+++|+.|++..|...
T Consensus       130 ---------------~Gl~~L~~~~~L~~L~L~~c~~I  152 (176)
T 3e4g_A          130 ---------------KGIIALHHFRNLKYLFLSDLPGV  152 (176)
T ss_dssp             ---------------HHHHHGGGCTTCCEEEEESCTTC
T ss_pred             ---------------HHHHHHhcCCCCCEEECCCCCCC
Confidence                           11112446777777777766543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.47  E-value=2e-07  Score=94.29  Aligned_cols=91  Identities=18%  Similarity=0.154  Sum_probs=55.9

Q ss_pred             CCceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEe
Q 014150          122 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTL  201 (430)
Q Consensus       122 ~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l  201 (430)
                      .+++.|++..+..  ..+|.   .+++|++|+|++|.+..-+.  .+++|+.|+|.++.+..-  .   ...++|+.|.+
T Consensus        61 ~~L~~L~L~~N~l--~~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~l--~---~~l~~L~~L~L  128 (622)
T 3g06_A           61 AHITTLVIPDNNL--TSLPA---LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTHL--P---ALPSGLCKLWI  128 (622)
T ss_dssp             TTCSEEEECSCCC--SCCCC---CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCCC--C---CCCTTCCEEEC
T ss_pred             CCCcEEEecCCCC--CCCCC---cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCCC--C---CCCCCcCEEEC
Confidence            5778877765432  24555   45788888888887765222  678888888888765431  1   14566777777


Q ss_pred             eccCCceEEEEeCCCcceEEEecc
Q 014150          202 MNFDGFTHLNIDAPNLQFFDIGGV  225 (430)
Q Consensus       202 ~~c~~~~~l~i~~p~L~~L~l~~~  225 (430)
                      .++. +..+....++|++|++.++
T Consensus       129 ~~N~-l~~lp~~l~~L~~L~Ls~N  151 (622)
T 3g06_A          129 FGNQ-LTSLPVLPPGLQELSVSDN  151 (622)
T ss_dssp             CSSC-CSCCCCCCTTCCEEECCSS
T ss_pred             CCCC-CCcCCCCCCCCCEEECcCC
Confidence            7653 2223223466677766653

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.47  E-value=1.2e-08  Score=94.53  Aligned_cols=107  Identities=17%  Similarity=0.049  Sum_probs=49.7

Q ss_pred             eeEEEEEeccCCCcchHHHHHHHHHhCCceEEEEEecCCCcccCCCcc--cccCceeEEEEeeeeecCC------CCCCC
Q 014150           96 ILKFKLSHRDLLGVSDIDRWILYMSRSCVKEFILEIWKGQRYKVPSSL--FLCQNLIHLELFNCLLKPP------STFKG  167 (430)
Q Consensus        96 l~~l~l~~~~~~~~~~v~~wl~~~~~~~l~~l~l~~~~~~~~~lp~~~--~~~~~L~~L~L~~~~~~~~------~~~~~  167 (430)
                      ++++.+..... ....+...........++++++..+... ...|..+  ..+++|++|+|++|.+...      ..+..
T Consensus        66 l~~l~l~~~~~-~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           66 VRRLTVGAAQV-PAQLLVGALRVLAYSRLKELTLEDLKIT-GTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCEEEECSCCC-BHHHHHHHHHHHHHSCCCEEEEESCCCB-SCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             eeEEEEeCCcC-CHHHHHHHHHhcccCceeEEEeeCCEec-cchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            45555544322 1223333333333345666666543221 1233333  4456666666666655431      11224


Q ss_pred             CCCcceEEeeeEEechhhHHHHhhcCccccceEeeccC
Q 014150          168 FRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFD  205 (430)
Q Consensus       168 ~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~  205 (430)
                      +++|++|+|.++.+... ....++.+++|++|+++++.
T Consensus       144 ~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~  180 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAF-SCEQVRAFPALTSLDLSDNP  180 (310)
T ss_dssp             CSCCCEEEEECCSSCCC-CTTSCCCCTTCCEEECCSCT
T ss_pred             ccCCCEEEeeCCCcchh-hHHHhccCCCCCEEECCCCC
Confidence            56666666666655322 12234455666666666553

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.46  E-value=5.7e-08  Score=88.28  Aligned_cols=121  Identities=17%  Similarity=0.205  Sum_probs=75.1

Q ss_pred             CCceEEEEEecCCCcccCCC-cccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccc
Q 014150          122 SCVKEFILEIWKGQRYKVPS-SLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLER  198 (430)
Q Consensus       122 ~~l~~l~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~  198 (430)
                      .+++.+++.....  ..++. .+..+++|++|++++|.+..  +..+.++++|++|+|.++.+.... ...+..+++|++
T Consensus        28 ~~l~~L~ls~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~  104 (276)
T 2z62_A           28 FSTKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA-LGAFSGLSSLQK  104 (276)
T ss_dssp             TTCCEEECTTCCC--CEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC-TTTTTTCTTCCE
T ss_pred             CCccEEECCCCcc--cccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccC-hhhhcCCccccE
Confidence            4677777743322  23443 45678999999999987754  346788999999999998865431 234677899999


Q ss_pred             eEeeccCCce--EEEE-eCCCcceEEEeccc-c----ceeeccCCCceEEEEEEE
Q 014150          199 LTLMNFDGFT--HLNI-DAPNLQFFDIGGVF-D----DVTFENTFHLALVSIGLY  245 (430)
Q Consensus       199 L~l~~c~~~~--~l~i-~~p~L~~L~l~~~~-~----~~~~~~~p~L~~l~i~~~  245 (430)
                      |.+.++.-..  ...+ ..++|+.|.+.+.. .    ...+..+++|+.|+++.+
T Consensus       105 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N  159 (276)
T 2z62_A          105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN  159 (276)
T ss_dssp             EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred             EECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCC
Confidence            9998764211  0001 23566666665421 1    112445566666666543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.45  E-value=4.3e-08  Score=99.02  Aligned_cols=115  Identities=17%  Similarity=0.155  Sum_probs=67.2

Q ss_pred             CCceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEe
Q 014150          122 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTL  201 (430)
Q Consensus       122 ~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l  201 (430)
                      ..++.|.+..+..  ..++ .+..+++|+.|+|++|.+.....+..+++|+.|+|.++.+.+-  . .+..+++|+.|.|
T Consensus        43 ~~L~~L~l~~n~i--~~l~-~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l--~-~l~~l~~L~~L~L  116 (605)
T 1m9s_A           43 NSIDQIIANNSDI--KSVQ-GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDL--S-SLKDLKKLKSLSL  116 (605)
T ss_dssp             TTCCCCBCTTCCC--CCCT-TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC--T-TSTTCTTCCEEEC
T ss_pred             CCCCEEECcCCCC--CCCh-HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCC--h-hhccCCCCCEEEe
Confidence            4566665543322  2233 3567788888888888776644477888888888888877542  1 3667888888888


Q ss_pred             eccCCceEEE--EeCCCcceEEEecccc-c-eeeccCCCceEEEEE
Q 014150          202 MNFDGFTHLN--IDAPNLQFFDIGGVFD-D-VTFENTFHLALVSIG  243 (430)
Q Consensus       202 ~~c~~~~~l~--i~~p~L~~L~l~~~~~-~-~~~~~~p~L~~l~i~  243 (430)
                      .++.-. .+.  ...++|+.|.+.++.- . ..+..+++|+.|+++
T Consensus       117 s~N~l~-~l~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls  161 (605)
T 1m9s_A          117 EHNGIS-DINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLE  161 (605)
T ss_dssp             TTSCCC-CCGGGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECC
T ss_pred             cCCCCC-CCccccCCCccCEEECCCCccCCchhhcccCCCCEEECc
Confidence            876421 110  0124555555544211 1 123344555555554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.44  E-value=7.4e-07  Score=88.59  Aligned_cols=104  Identities=19%  Similarity=0.212  Sum_probs=53.3

Q ss_pred             cCCCcccccCceeEEEEeeeeecCC--CCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEEE-eC
Q 014150          138 KVPSSLFLCQNLIHLELFNCLLKPP--STFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNI-DA  214 (430)
Q Consensus       138 ~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~i-~~  214 (430)
                      .+|..+.  ++|++|+|++|.+...  ..+.++++|++|+|+++.+.+. ....+..+++|++|+++++. +..+.. ..
T Consensus        14 ~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~l   89 (520)
T 2z7x_B           14 HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYL-DISVFKFNQELEYLDLSHNK-LVKISCHPT   89 (520)
T ss_dssp             SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEE-EGGGGTTCTTCCEEECCSSC-CCEEECCCC
T ss_pred             ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCc-ChHHhhcccCCCEEecCCCc-eeecCcccc
Confidence            3444333  5666666666655442  2355666666666666655422 12234556666666666543 222211 34


Q ss_pred             CCcceEEEeccc-cc----eeeccCCCceEEEEEEE
Q 014150          215 PNLQFFDIGGVF-DD----VTFENTFHLALVSIGLY  245 (430)
Q Consensus       215 p~L~~L~l~~~~-~~----~~~~~~p~L~~l~i~~~  245 (430)
                      ++|++|++.++. ..    ..+.++++|+.|+++.+
T Consensus        90 ~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n  125 (520)
T 2z7x_B           90 VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT  125 (520)
T ss_dssp             CCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEES
T ss_pred             CCccEEeccCCccccccchhhhccCCcceEEEecCc
Confidence            566666665432 11    23455666666666543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.41  E-value=2.2e-07  Score=84.11  Aligned_cols=177  Identities=20%  Similarity=0.171  Sum_probs=104.9

Q ss_pred             CCceEEEEEecCCCcccCCC-cccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccc
Q 014150          122 SCVKEFILEIWKGQRYKVPS-SLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLER  198 (430)
Q Consensus       122 ~~l~~l~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~  198 (430)
                      .++++|++.....  ..++. .+..+++|++|+++++.+..  +..|..+++|++|+|.++.+..- ....+..+++|++
T Consensus        37 ~~l~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~  113 (270)
T 2o6q_A           37 ADTKKLDLQSNKL--SSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL-PIGVFDQLVNLAE  113 (270)
T ss_dssp             TTCSEEECCSSCC--SCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCC-CTTTTTTCSSCCE
T ss_pred             CCCCEEECcCCCC--CeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcC-CHhHcccccCCCE
Confidence            4677777754432  24444 45678999999999998765  23467899999999999887542 1244677899999


Q ss_pred             eEeeccCCceEEEEeCCCcceEEEeccccceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEe
Q 014150          199 LTLMNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQ  278 (430)
Q Consensus       199 L~l~~c~~~~~l~i~~p~L~~L~l~~~~~~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~  278 (430)
                      |.+.++.-. .+                ....+..+++|+.|+++.+......           ...+..+++|++|.++
T Consensus       114 L~l~~n~l~-~~----------------~~~~~~~l~~L~~L~Ls~n~l~~~~-----------~~~~~~l~~L~~L~L~  165 (270)
T 2o6q_A          114 LRLDRNQLK-SL----------------PPRVFDSLTKLTYLSLGYNELQSLP-----------KGVFDKLTSLKELRLY  165 (270)
T ss_dssp             EECCSSCCC-CC----------------CTTTTTTCTTCCEEECCSSCCCCCC-----------TTTTTTCTTCCEEECC
T ss_pred             EECCCCccC-ee----------------CHHHhCcCcCCCEEECCCCcCCccC-----------HhHccCCcccceeEec
Confidence            999875321 11                1112345666666666543221110           1124567777777777


Q ss_pred             eeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecC
Q 014150          279 SYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARP  338 (430)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~  338 (430)
                      .+.+..+...    .+ ..+++|++|+++.+.....    -...+..+++|+.|++.+++
T Consensus       166 ~n~l~~~~~~----~~-~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          166 NNQLKRVPEG----AF-DKLTELKTLKLDNNQLKRV----PEGAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             SSCCSCCCTT----TT-TTCTTCCEEECCSSCCSCC----CTTTTTTCTTCCEEECCSSC
T ss_pred             CCcCcEeChh----Hh-ccCCCcCEEECCCCcCCcC----CHHHhccccCCCEEEecCCC
Confidence            6655422111    11 1355777777743321110    11235667788888887765

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.41  E-value=5.9e-08  Score=99.94  Aligned_cols=222  Identities=15%  Similarity=0.073  Sum_probs=112.2

Q ss_pred             ceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEE----EeCCCcceEE
Q 014150          148 NLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLN----IDAPNLQFFD  221 (430)
Q Consensus       148 ~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~----i~~p~L~~L~  221 (430)
                      +|+.|++++|.+..  +..+..+++|+.|+|.++.+.+......+.++++|++|.+.++.- ..+.    ...|+|+.|.
T Consensus       382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~~~~L~~L~  460 (680)
T 1ziw_A          382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKY-LQLTRNSFALVPSLQRLM  460 (680)
T ss_dssp             CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSE-EECCTTTTTTCTTCCEEE
T ss_pred             cCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCc-ceeChhhhhcCcccccch
Confidence            34444444444332  334556677777777776654321223355677777777776541 1110    0246777777


Q ss_pred             Eecccc------ceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeehhhcccCCCC--
Q 014150          222 IGGVFD------DVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSR--  293 (430)
Q Consensus       222 l~~~~~------~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~--  293 (430)
                      +.+..-      ...+..+++|+.|+++.+......           ...+.++++|+.|+++++.+..+.....+..  
T Consensus       461 l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~-----------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~  529 (680)
T 1ziw_A          461 LRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIN-----------DDMLEGLEKLEILDLQHNNLARLWKHANPGGPI  529 (680)
T ss_dssp             CTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCC-----------TTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCC
T ss_pred             hccccccccccCCcccccCCCCCEEECCCCCCCcCC-----------hhhhccccccCEEeCCCCCccccchhhccCCcc
Confidence            765321      123456777777777654322110           1235677888888888776654322211110  


Q ss_pred             -CCccccccceeEEEEeeCChhhHHHHH-HHHhcCCCccEEEEeecCCCCcccccccceecccccccccCceEEEEEeee
Q 014150          294 -LPRPCVDLNYLSIRINFNDLEENLAAL-CLLRSSPNLQELEMLARPEETGIGVLTNFWEVDHWTSLFSQLRMVKIVGIS  371 (430)
Q Consensus       294 -~~~~~~~L~~L~l~~~~~~~~~~~~l~-~ll~~~p~L~~L~l~~~~~~~~~~~~~~~w~~~~~~~~~~~L~~v~i~~~~  371 (430)
                       ....+++|+.|+++.+...     .++ ..+..+++|+.|+++++.-...         ....-..+.+|+.+.+.+-.
T Consensus       530 ~~~~~l~~L~~L~L~~N~l~-----~i~~~~~~~l~~L~~L~Ls~N~l~~l---------~~~~~~~l~~L~~L~L~~N~  595 (680)
T 1ziw_A          530 YFLKGLSHLHILNLESNGFD-----EIPVEVFKDLFELKIIDLGLNNLNTL---------PASVFNNQVSLKSLNLQKNL  595 (680)
T ss_dssp             CTTTTCTTCCEEECCSSCCC-----CCCTTTTTTCTTCCEEECCSSCCCCC---------CTTTTTTCTTCCEEECTTSC
T ss_pred             hhhcCCCCCCEEECCCCCCC-----CCCHHHcccccCcceeECCCCCCCcC---------CHhHhCCCCCCCEEECCCCc
Confidence             1124567777777433211     111 2467788888888876543210         00001134677777766432


Q ss_pred             cCccHHHHHHHHHc-cCCCcceEEEeecC
Q 014150          372 GIRSELEFIKFVLS-NSPVLETMTIKPAS  399 (430)
Q Consensus       372 ~~~~e~~~~~~il~-~~~~L~~l~i~~~~  399 (430)
                      -..-...    .+. ..++|+.+.+..++
T Consensus       596 l~~~~~~----~~~~~~~~L~~l~l~~N~  620 (680)
T 1ziw_A          596 ITSVEKK----VFGPAFRNLTELDMRFNP  620 (680)
T ss_dssp             CCBCCHH----HHHHHHTTCSEEECTTCC
T ss_pred             CCccChh----HhcccccccCEEEccCCC
Confidence            1111111    112 34678888887544

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.38  E-value=7.9e-07  Score=88.41  Aligned_cols=57  Identities=14%  Similarity=0.044  Sum_probs=32.8

Q ss_pred             CceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeecc
Q 014150          147 QNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNF  204 (430)
Q Consensus       147 ~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c  204 (430)
                      .+|+.|+++++.+.....+..+++|++|+|+++.+.+. +...+..+++|+.|.+.++
T Consensus       302 ~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~N  358 (520)
T 2z7x_B          302 MNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDT-VFENCGHLTELETLILQMN  358 (520)
T ss_dssp             CCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTT-TTTTCCCCSSCCEEECCSS
T ss_pred             CceeEEEcCCCccccccchhhCCcccEEEeECCccChh-hhhhhccCCCCCEEEccCC
Confidence            45666777666654422224666677777766665542 1223455666666666655

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.37  E-value=4.2e-07  Score=83.21  Aligned_cols=176  Identities=18%  Similarity=0.093  Sum_probs=113.9

Q ss_pred             ccCCCcccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEE---
Q 014150          137 YKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLN---  211 (430)
Q Consensus       137 ~~lp~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~---  211 (430)
                      ..+|..+.  ++++.|+|++|.+..  +..+..+++|+.|+|.++.++.-..   ...+++|+.|.++++.- ..+.   
T Consensus        23 ~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~Ls~N~l-~~l~~~~   96 (290)
T 1p9a_G           23 TALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV---DGTLPVLGTLDLSHNQL-QSLPLLG   96 (290)
T ss_dssp             SSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC---CSCCTTCCEEECCSSCC-SSCCCCT
T ss_pred             CcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC---CCCCCcCCEEECCCCcC-CcCchhh
Confidence            35665543  688999999987754  3467789999999999988654211   15789999999987632 2221   


Q ss_pred             EeCCCcceEEEeccc-cc---eeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeehhhc
Q 014150          212 IDAPNLQFFDIGGVF-DD---VTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAI  287 (430)
Q Consensus       212 i~~p~L~~L~l~~~~-~~---~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~  287 (430)
                      -..++|+.|.+.++. ..   -.+..+++|+.|+++.+.....           ....+..+++|+.|+++.+.+..+..
T Consensus        97 ~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~-----------~~~~~~~l~~L~~L~L~~N~l~~l~~  165 (290)
T 1p9a_G           97 QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL-----------PPGLLTPTPKLEKLSLANNNLTELPA  165 (290)
T ss_dssp             TTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCC-----------CTTTTTTCTTCCEEECTTSCCSCCCT
T ss_pred             ccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCcc-----------ChhhcccccCCCEEECCCCcCCccCH
Confidence            124788888887642 22   2356788999998875432211           01235678999999999887653221


Q ss_pred             ccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCC
Q 014150          288 GNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPE  339 (430)
Q Consensus       288 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~  339 (430)
                           .....+++|++|+++.....     .++.-+...++|+.|.+.+++-
T Consensus       166 -----~~~~~l~~L~~L~L~~N~l~-----~ip~~~~~~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          166 -----GLLNGLENLDTLLLQENSLY-----TIPKGFFGSHLLPFAFLHGNPW  207 (290)
T ss_dssp             -----TTTTTCTTCCEEECCSSCCC-----CCCTTTTTTCCCSEEECCSCCB
T ss_pred             -----HHhcCcCCCCEEECCCCcCC-----ccChhhcccccCCeEEeCCCCc
Confidence                 11124678888888543221     2333345567899998888763

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.35  E-value=2.4e-07  Score=83.59  Aligned_cols=141  Identities=16%  Similarity=0.111  Sum_probs=72.6

Q ss_pred             cccCceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEE-EEeCCCcceEEE
Q 014150          144 FLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHL-NIDAPNLQFFDI  222 (430)
Q Consensus       144 ~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l-~i~~p~L~~L~l  222 (430)
                      ..+++|+.|++++|.+....++..+++|+.|+|+++.+.+-.-   +..++.|+.|.+.++.-. .+ .+..++|+.|.+
T Consensus        38 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~---l~~l~~L~~L~L~~N~l~-~l~~~~~~~L~~L~L  113 (263)
T 1xeu_A           38 KELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP---LKDLTKLEELSVNRNRLK-NLNGIPSACLSRLFL  113 (263)
T ss_dssp             HHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG---GTTCSSCCEEECCSSCCS-CCTTCCCSSCCEEEC
T ss_pred             hhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh---hccCCCCCEEECCCCccC-CcCccccCcccEEEc
Confidence            3456666777766666554455566777777776666543211   556667777776655311 10 011155555555


Q ss_pred             eccc-cc-eeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeehhhcccCCCCCCccccc
Q 014150          223 GGVF-DD-VTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVD  300 (430)
Q Consensus       223 ~~~~-~~-~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  300 (430)
                      .++. .. -.+..+++|+.|+++.+...+.             ..+..+++|+.|+++++.+...   .   .+. .+++
T Consensus       114 ~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~-------------~~l~~l~~L~~L~L~~N~i~~~---~---~l~-~l~~  173 (263)
T 1xeu_A          114 DNNELRDTDSLIHLKNLEILSIRNNKLKSI-------------VMLGFLSKLEVLDLHGNEITNT---G---GLT-RLKK  173 (263)
T ss_dssp             CSSCCSBSGGGTTCTTCCEEECTTSCCCBC-------------GGGGGCTTCCEEECTTSCCCBC---T---TST-TCCC
T ss_pred             cCCccCCChhhcCcccccEEECCCCcCCCC-------------hHHccCCCCCEEECCCCcCcch---H---Hhc-cCCC
Confidence            5421 11 1244566666666654322110             1245666777777766655422   0   111 3556


Q ss_pred             cceeEEEE
Q 014150          301 LNYLSIRI  308 (430)
Q Consensus       301 L~~L~l~~  308 (430)
                      |+.|+++.
T Consensus       174 L~~L~l~~  181 (263)
T 1xeu_A          174 VNWIDLTG  181 (263)
T ss_dssp             CCEEEEEE
T ss_pred             CCEEeCCC
Confidence            66666643

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.35  E-value=1.2e-07  Score=97.68  Aligned_cols=122  Identities=18%  Similarity=0.091  Sum_probs=71.5

Q ss_pred             CCceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecC---CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccc
Q 014150          122 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP---PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLER  198 (430)
Q Consensus       122 ~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~  198 (430)
                      ..++.+++..+... ...|..+..+++|+.|++++|.+..   +..+.++++|+.|+|.++.+..-. ...+..+|.|+.
T Consensus       381 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~~~~L~~  458 (680)
T 1ziw_A          381 SPLHILNLTKNKIS-KIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLT-RNSFALVPSLQR  458 (680)
T ss_dssp             SCCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECC-TTTTTTCTTCCE
T ss_pred             CcCceEECCCCCCC-eEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeC-hhhhhcCccccc
Confidence            46777766433221 1234455667888888888887642   245678888888888888754321 223456788888


Q ss_pred             eEeeccCCc--eEE---EEeCCCcceEEEeccc-c---ceeeccCCCceEEEEEEE
Q 014150          199 LTLMNFDGF--THL---NIDAPNLQFFDIGGVF-D---DVTFENTFHLALVSIGLY  245 (430)
Q Consensus       199 L~l~~c~~~--~~l---~i~~p~L~~L~l~~~~-~---~~~~~~~p~L~~l~i~~~  245 (430)
                      |.+.++...  ..+   --..++|+.|++.++. .   ...+..+++|+.|+++.+
T Consensus       459 L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N  514 (680)
T 1ziw_A          459 LMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHN  514 (680)
T ss_dssp             EECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             chhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCC
Confidence            888765311  000   0123567777776532 1   112456677777777654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.33  E-value=2.1e-07  Score=76.00  Aligned_cols=83  Identities=25%  Similarity=0.265  Sum_probs=58.3

Q ss_pred             CCceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEe
Q 014150          122 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTL  201 (430)
Q Consensus       122 ~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l  201 (430)
                      .+++++++..+......+|..+..+++|+.|++++|.+.....+..+++|+.|+|+++.+.+. +...+..+++|+.|.+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~l   95 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLTHLNL   95 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSC-THHHHHHCTTCCEEEC
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccch-HHHHhhhCCCCCEEEC
Confidence            456666665443221256666677788888888888776655667788888888888887654 4556667888888888


Q ss_pred             eccC
Q 014150          202 MNFD  205 (430)
Q Consensus       202 ~~c~  205 (430)
                      .++.
T Consensus        96 s~N~   99 (149)
T 2je0_A           96 SGNK   99 (149)
T ss_dssp             TTSC
T ss_pred             CCCc
Confidence            8764

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.31  E-value=1.8e-06  Score=86.79  Aligned_cols=104  Identities=17%  Similarity=0.159  Sum_probs=57.7

Q ss_pred             cCCCcccccCceeEEEEeeeeecCC--CCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEEE-eC
Q 014150          138 KVPSSLFLCQNLIHLELFNCLLKPP--STFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNI-DA  214 (430)
Q Consensus       138 ~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~i-~~  214 (430)
                      .+|..+.  ++|+.|+|++|.+...  ..+.++++|++|+|+++.+..- ....+..+++|++|+++++. +..+.- ..
T Consensus        45 ~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~l  120 (562)
T 3a79_B           45 HVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSL-DFHVFLFNQDLEYLDVSHNR-LQNISCCPM  120 (562)
T ss_dssp             SCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEE-CTTTTTTCTTCCEEECTTSC-CCEECSCCC
T ss_pred             cCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcC-CHHHhCCCCCCCEEECCCCc-CCccCcccc
Confidence            3554332  5677777777666542  3466677777777777665432 12334556777777776653 221110 34


Q ss_pred             CCcceEEEeccc-cc----eeeccCCCceEEEEEEE
Q 014150          215 PNLQFFDIGGVF-DD----VTFENTFHLALVSIGLY  245 (430)
Q Consensus       215 p~L~~L~l~~~~-~~----~~~~~~p~L~~l~i~~~  245 (430)
                      ++|++|++.++. ..    ..+.++++|+.|+++..
T Consensus       121 ~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n  156 (562)
T 3a79_B          121 ASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA  156 (562)
T ss_dssp             TTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECS
T ss_pred             ccCCEEECCCCCccccCchHhhcccCcccEEecCCC
Confidence            666777666532 11    23556677777777653

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.29  E-value=3e-07  Score=79.62  Aligned_cols=156  Identities=17%  Similarity=0.142  Sum_probs=93.6

Q ss_pred             ccCCCcccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEEEeC
Q 014150          137 YKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDA  214 (430)
Q Consensus       137 ~~lp~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~i~~  214 (430)
                      ..+|..+  .++|++|+++++.+..  +..+..+++|++|+|.++.+..- ....+..+++|+.|.+.++.- ..     
T Consensus        20 ~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l-~~-----   90 (208)
T 2o6s_A           20 TSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL-PNGVFNKLTSLTYLNLSTNQL-QS-----   90 (208)
T ss_dssp             SSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC-CC-----
T ss_pred             cCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCcc-ChhhcCCCCCcCEEECCCCcC-Cc-----
Confidence            3455443  3588999999987765  23467889999999998876532 233456788888888887632 11     


Q ss_pred             CCcceEEEeccccceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeehhhcccCCCCC
Q 014150          215 PNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRL  294 (430)
Q Consensus       215 p~L~~L~l~~~~~~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~  294 (430)
                                 .....+..+++|+.|+++.+......           ...+..+++|++|+++.+.+..+..     ..
T Consensus        91 -----------~~~~~~~~l~~L~~L~L~~N~l~~~~-----------~~~~~~l~~L~~L~l~~N~l~~~~~-----~~  143 (208)
T 2o6s_A           91 -----------LPNGVFDKLTQLKELALNTNQLQSLP-----------DGVFDKLTQLKDLRLYQNQLKSVPD-----GV  143 (208)
T ss_dssp             -----------CCTTTTTTCTTCCEEECCSSCCCCCC-----------TTTTTTCTTCCEEECCSSCCSCCCT-----TT
T ss_pred             -----------cCHhHhcCccCCCEEEcCCCcCcccC-----------HhHhccCCcCCEEECCCCccceeCH-----HH
Confidence                       11112456677777777544321110           1225677888888888776542211     11


Q ss_pred             CccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCC
Q 014150          295 PRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPE  339 (430)
Q Consensus       295 ~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~  339 (430)
                      ...+++|++|++....           +...||+|+.|.+..+..
T Consensus       144 ~~~l~~L~~L~l~~N~-----------~~~~~~~l~~L~~~~n~~  177 (208)
T 2o6s_A          144 FDRLTSLQYIWLHDNP-----------WDCTCPGIRYLSEWINKH  177 (208)
T ss_dssp             TTTCTTCCEEECCSCC-----------BCCCTTTTHHHHHHHHHC
T ss_pred             hccCCCccEEEecCCC-----------eecCCCCHHHHHHHHHhC
Confidence            1245678877774321           224567777777766543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.28  E-value=1.2e-06  Score=80.21  Aligned_cols=98  Identities=30%  Similarity=0.235  Sum_probs=71.2

Q ss_pred             eeEEEEEeccCCCcchHHHHHHHHHhCCceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecCCCCCCCCCCcceEE
Q 014150           96 ILKFKLSHRDLLGVSDIDRWILYMSRSCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLD  175 (430)
Q Consensus        96 l~~l~l~~~~~~~~~~v~~wl~~~~~~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~  175 (430)
                      ++.+.+..........+      ....+++.|++..+..  ..++. +..+++|+.|++++|.+.....+..+++|+.|+
T Consensus        48 L~~L~l~~~~i~~~~~~------~~l~~L~~L~L~~n~l--~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~  118 (291)
T 1h6t_A           48 IDQIIANNSDIKSVQGI------QYLPNVTKLFLNGNKL--TDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLS  118 (291)
T ss_dssp             CCEEECTTSCCCCCTTG------GGCTTCCEEECCSSCC--CCCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEE
T ss_pred             ccEEEccCCCcccChhH------hcCCCCCEEEccCCcc--CCCcc-cccCCCCCEEECCCCcCCCChhhccCCCCCEEE
Confidence            66777766543332221      2236889888865433  23444 677899999999999988766688999999999


Q ss_pred             eeeEEechhhHHHHhhcCccccceEeeccC
Q 014150          176 LQHITLSQDVFENLISSSPTLERLTLMNFD  205 (430)
Q Consensus       176 L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~  205 (430)
                      |.++.+.+-   .-+..+++|+.|.+.++.
T Consensus       119 L~~n~i~~~---~~l~~l~~L~~L~l~~n~  145 (291)
T 1h6t_A          119 LEHNGISDI---NGLVHLPQLESLYLGNNK  145 (291)
T ss_dssp             CTTSCCCCC---GGGGGCTTCCEEECCSSC
T ss_pred             CCCCcCCCC---hhhcCCCCCCEEEccCCc
Confidence            999987653   236679999999999874

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.25  E-value=7e-07  Score=79.14  Aligned_cols=188  Identities=10%  Similarity=0.062  Sum_probs=98.6

Q ss_pred             CCceEEEEEecCCCcccCCC-cccccCceeEEEEeeee-ecC--CCCCCCCCCcceEEeee-EEechhhHHHHhhcCccc
Q 014150          122 SCVKEFILEIWKGQRYKVPS-SLFLCQNLIHLELFNCL-LKP--PSTFKGFRNLKSLDLQH-ITLSQDVFENLISSSPTL  196 (430)
Q Consensus       122 ~~l~~l~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~-~~~--~~~~~~~~~L~~L~L~~-~~~~~~~l~~l~s~cp~L  196 (430)
                      .+++.+++.....  ..+|. .+..+++|++|++++|. +..  +..|.++++|++|+|.+ +.+..- -...+..+++|
T Consensus        31 ~~l~~L~l~~n~l--~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i-~~~~f~~l~~L  107 (239)
T 2xwt_C           31 PSTQTLKLIETHL--RTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI-DPDALKELPLL  107 (239)
T ss_dssp             TTCCEEEEESCCC--SEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE-CTTSEECCTTC
T ss_pred             CcccEEEEeCCcc--eEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc-CHHHhCCCCCC
Confidence            3566666654332  23333 34456777777777774 432  33566777777777776 444321 12234567777


Q ss_pred             cceEeeccCCceEEE--EeCCCcc---eEEEecc-c-cc---eeeccCCCce-EEEEEEEeeccccccCCCCCcchHHHH
Q 014150          197 ERLTLMNFDGFTHLN--IDAPNLQ---FFDIGGV-F-DD---VTFENTFHLA-LVSIGLYVNVKNDQAMGPGNSCKLLRF  265 (430)
Q Consensus       197 e~L~l~~c~~~~~l~--i~~p~L~---~L~l~~~-~-~~---~~~~~~p~L~-~l~i~~~~~~~~~~~~~~~~~~~~~~~  265 (430)
                      +.|.+.++.-. .+.  -..++|+   .|++.+. . ..   ..+.++++|+ .++++........           ...
T Consensus       108 ~~L~l~~n~l~-~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~-----------~~~  175 (239)
T 2xwt_C          108 KFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQ-----------GYA  175 (239)
T ss_dssp             CEEEEEEECCC-SCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEEC-----------TTT
T ss_pred             CEEeCCCCCCc-cccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccC-----------Hhh
Confidence            77777765311 111  0123444   6666654 1 11   2355678888 8877644321110           011


Q ss_pred             hccCCCccEEEEeeee-eehhhcccCCCCCCccc-cccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeec
Q 014150          266 FVHLPHIRRLEIQSYF-LKYLAIGNVPSRLPRPC-VDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLAR  337 (430)
Q Consensus       266 l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~  337 (430)
                      +.. ++|+.|+++++. +..+...    .+. .+ ++|+.|+++......     ++.  ..+++|+.|.+..+
T Consensus       176 ~~~-~~L~~L~L~~n~~l~~i~~~----~~~-~l~~~L~~L~l~~N~l~~-----l~~--~~~~~L~~L~l~~~  236 (239)
T 2xwt_C          176 FNG-TKLDAVYLNKNKYLTVIDKD----AFG-GVYSGPSLLDVSQTSVTA-----LPS--KGLEHLKELIARNT  236 (239)
T ss_dssp             TTT-CEEEEEECTTCTTCCEECTT----TTT-TCSBCCSEEECTTCCCCC-----CCC--TTCTTCSEEECTTC
T ss_pred             cCC-CCCCEEEcCCCCCcccCCHH----Hhh-ccccCCcEEECCCCcccc-----CCh--hHhccCceeeccCc
Confidence            233 688888888773 4422111    111 34 678888874322111     111  25788888887764

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.23  E-value=9.7e-07  Score=89.30  Aligned_cols=59  Identities=19%  Similarity=0.080  Sum_probs=36.1

Q ss_pred             ccCCCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCC
Q 014150          267 VHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPE  339 (430)
Q Consensus       267 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~  339 (430)
                      ..+++|+.|+++++.+.         .+|..+++|+.|+++.+...     .++..+.++|+|+.|+|.+++-
T Consensus       238 ~~l~~L~~L~Ls~N~L~---------~lp~~~~~L~~L~Ls~N~L~-----~lp~~l~~l~~L~~L~L~~N~l  296 (622)
T 3g06_A          238 VLPSELKELMVSGNRLT---------SLPMLPSGLLSLSVYRNQLT-----RLPESLIHLSSETTVNLEGNPL  296 (622)
T ss_dssp             CCCTTCCEEECCSSCCS---------CCCCCCTTCCEEECCSSCCC-----SCCGGGGGSCTTCEEECCSCCC
T ss_pred             CCCCcCcEEECCCCCCC---------cCCcccccCcEEeCCCCCCC-----cCCHHHhhccccCEEEecCCCC
Confidence            34567777777766543         12224567887777543222     2344567788888888887754

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.21  E-value=1.1e-06  Score=78.63  Aligned_cols=151  Identities=13%  Similarity=0.080  Sum_probs=93.3

Q ss_pred             CCceEEEEEecCCCcccCC-CcccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccc
Q 014150          122 SCVKEFILEIWKGQRYKVP-SSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLER  198 (430)
Q Consensus       122 ~~l~~l~l~~~~~~~~~lp-~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~  198 (430)
                      ..++.|++.....  ..++ ..+..+++|++|+|++|.+..  +..+..+++|+.|+|.++.+..- ....+..+++|+.
T Consensus        35 ~~l~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~  111 (251)
T 3m19_A           35 ADTEKLDLQSTGL--ATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL-PLGVFDHLTQLDK  111 (251)
T ss_dssp             TTCCEEECTTSCC--CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCE
T ss_pred             CCCCEEEccCCCc--CccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCccccc-ChhHhcccCCCCE
Confidence            4677777654322  2333 345678999999999998865  34478899999999999987633 2344677899999


Q ss_pred             eEeeccCCceEEEEeCCCcceEEEeccccceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEe
Q 014150          199 LTLMNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQ  278 (430)
Q Consensus       199 L~l~~c~~~~~l~i~~p~L~~L~l~~~~~~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~  278 (430)
                      |.+.++. +..                .....+..+++|+.|+++.+......           ...+..+++|++|+|+
T Consensus       112 L~L~~N~-l~~----------------~~~~~~~~l~~L~~L~Ls~N~l~~~~-----------~~~~~~l~~L~~L~L~  163 (251)
T 3m19_A          112 LYLGGNQ-LKS----------------LPSGVFDRLTKLKELRLNTNQLQSIP-----------AGAFDKLTNLQTLSLS  163 (251)
T ss_dssp             EECCSSC-CCC----------------CCTTTTTTCTTCCEEECCSSCCCCCC-----------TTTTTTCTTCCEEECC
T ss_pred             EEcCCCc-CCC----------------cChhHhccCCcccEEECcCCcCCccC-----------HHHcCcCcCCCEEECC
Confidence            9998763 211                11112345677777777544321110           1225677888888888


Q ss_pred             eeeeehhhcccCCCCCCccccccceeEEEE
Q 014150          279 SYFLKYLAIGNVPSRLPRPCVDLNYLSIRI  308 (430)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  308 (430)
                      .+.+..+..     .....+++|+.|++..
T Consensus       164 ~N~l~~~~~-----~~~~~l~~L~~L~l~~  188 (251)
T 3m19_A          164 TNQLQSVPH-----GAFDRLGKLQTITLFG  188 (251)
T ss_dssp             SSCCSCCCT-----TTTTTCTTCCEEECCS
T ss_pred             CCcCCccCH-----HHHhCCCCCCEEEeeC
Confidence            776542211     1111456777777743

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.21  E-value=1.9e-06  Score=75.36  Aligned_cols=155  Identities=19%  Similarity=0.236  Sum_probs=93.0

Q ss_pred             ccCCCcccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEEEeC
Q 014150          137 YKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDA  214 (430)
Q Consensus       137 ~~lp~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~i~~  214 (430)
                      ..+|..+.  ++|+.|+|+++.+..  +..|..+++|+.|+|.++.+..- ....+.++++|+.|.|.++.- ..     
T Consensus        24 ~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l-~~-----   94 (220)
T 2v9t_B           24 TEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL-APDAFQGLRSLNSLVLYGNKI-TE-----   94 (220)
T ss_dssp             SSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEE-CTTTTTTCSSCCEEECCSSCC-CC-----
T ss_pred             CcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCc-CHHHhhCCcCCCEEECCCCcC-Cc-----
Confidence            44665443  689999999987754  34677899999999999876532 133466788888888887532 11     


Q ss_pred             CCcceEEEeccccceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeehhhcccCCCCC
Q 014150          215 PNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRL  294 (430)
Q Consensus       215 p~L~~L~l~~~~~~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~  294 (430)
                                 .....+..+++|+.|+++.+......           ...+..+++|+.|+|+++.+..+...     .
T Consensus        95 -----------l~~~~f~~l~~L~~L~L~~N~l~~~~-----------~~~~~~l~~L~~L~L~~N~l~~~~~~-----~  147 (220)
T 2v9t_B           95 -----------LPKSLFEGLFSLQLLLLNANKINCLR-----------VDAFQDLHNLNLLSLYDNKLQTIAKG-----T  147 (220)
T ss_dssp             -----------CCTTTTTTCTTCCEEECCSSCCCCCC-----------TTTTTTCTTCCEEECCSSCCSCCCTT-----T
T ss_pred             -----------cCHhHccCCCCCCEEECCCCCCCEeC-----------HHHcCCCCCCCEEECCCCcCCEECHH-----H
Confidence                       11223456777777777654322110           12356788899999988776533211     1


Q ss_pred             CccccccceeEEEEe-eCChhhHHHHHHHHhcCC
Q 014150          295 PRPCVDLNYLSIRIN-FNDLEENLAALCLLRSSP  327 (430)
Q Consensus       295 ~~~~~~L~~L~l~~~-~~~~~~~~~l~~ll~~~p  327 (430)
                      ...+++|+.|++... +.-.-.+.++...++..+
T Consensus       148 ~~~l~~L~~L~L~~N~~~c~c~l~~l~~~l~~~~  181 (220)
T 2v9t_B          148 FSPLRAIQTMHLAQNPFICDCHLKWLADYLHTNP  181 (220)
T ss_dssp             TTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCC
T ss_pred             HhCCCCCCEEEeCCCCcCCCCccHHHHHHHHhCC
Confidence            114567888888322 111123445655555443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.20  E-value=7.7e-07  Score=83.79  Aligned_cols=181  Identities=18%  Similarity=0.221  Sum_probs=97.2

Q ss_pred             ccCCCcccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEE---
Q 014150          137 YKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLN---  211 (430)
Q Consensus       137 ~~lp~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~---  211 (430)
                      .++|..+  .+++++|+|++|.+..  +..|.++++|++|+|+++.+....-...+.++++|+++.+.++..+..+.   
T Consensus        22 t~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~   99 (350)
T 4ay9_X           22 TEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEA   99 (350)
T ss_dssp             CSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTS
T ss_pred             CccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchh
Confidence            3566554  2578888888887764  34577888888888888865322112345677777777766666555442   


Q ss_pred             -EeCCCcceEEEeccc----cceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccC-CCccEEEEeeeeeehh
Q 014150          212 -IDAPNLQFFDIGGVF----DDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHL-PHIRRLEIQSYFLKYL  285 (430)
Q Consensus       212 -i~~p~L~~L~l~~~~----~~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~  285 (430)
                       -..++|+.|.+.+..    ....+....++..+++..........          ...+..+ ..++.|.++.+.+..+
T Consensus       100 f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~----------~~~f~~~~~~l~~L~L~~N~i~~i  169 (350)
T 4ay9_X          100 FQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE----------RNSFVGLSFESVILWLNKNGIQEI  169 (350)
T ss_dssp             BCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEEC----------TTSSTTSBSSCEEEECCSSCCCEE
T ss_pred             hhhccccccccccccccccCCchhhcccchhhhhhhcccccccccc----------ccchhhcchhhhhhccccccccCC
Confidence             124778888887632    11222344455555554322111000          0112233 4677888887765532


Q ss_pred             hcccCCCCCCccccccceeEEEEeeCChhhHHHHH-HHHhcCCCccEEEEeecCC
Q 014150          286 AIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAAL-CLLRSSPNLQELEMLARPE  339 (430)
Q Consensus       286 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-~ll~~~p~L~~L~l~~~~~  339 (430)
                      ...     .. ...+|+.|.+...    ..+..++ ..++.+++|+.|+++.+.-
T Consensus       170 ~~~-----~f-~~~~L~~l~l~~~----n~l~~i~~~~f~~l~~L~~LdLs~N~l  214 (350)
T 4ay9_X          170 HNS-----AF-NGTQLDELNLSDN----NNLEELPNDVFHGASGPVILDISRTRI  214 (350)
T ss_dssp             CTT-----SS-TTEEEEEEECTTC----TTCCCCCTTTTTTEECCSEEECTTSCC
T ss_pred             Chh-----hc-cccchhHHhhccC----CcccCCCHHHhccCcccchhhcCCCCc
Confidence            211     00 1234554444211    1111121 2457778888888877643

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.20  E-value=3.1e-08  Score=94.06  Aligned_cols=170  Identities=15%  Similarity=0.113  Sum_probs=88.3

Q ss_pred             CceeEEEEeeeeecCC--CCC-----CCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEEEeCCCcce
Q 014150          147 QNLIHLELFNCLLKPP--STF-----KGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQF  219 (430)
Q Consensus       147 ~~L~~L~L~~~~~~~~--~~~-----~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~i~~p~L~~  219 (430)
                      ++|+.|+|++|.+.+.  ..+     ...++|++|+|+++.+++..+..+...+++|++|+|++|.-.. .         
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~-~---------  141 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGP-E---------  141 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCH-H---------
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCH-H---------
Confidence            4555666665554321  000     1235666666666666555555555555566666666552110 0         


Q ss_pred             EEEeccccce--ee-ccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeehhhcccCCCCCCc
Q 014150          220 FDIGGVFDDV--TF-ENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPR  296 (430)
Q Consensus       220 L~l~~~~~~~--~~-~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  296 (430)
                          + ...+  .+ ...++|+.|+++.+...+.       ....+...+...++|++|+|+.+.+...........+. 
T Consensus       142 ----~-~~~L~~~L~~~~~~L~~L~Ls~n~l~~~-------~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~-  208 (372)
T 3un9_A          142 ----A-CKDLRDLLLHDQCQITTLRLSNNPLTAA-------GVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLD-  208 (372)
T ss_dssp             ----H-HHHHHHHHHSTTCCCCEEECCSSCCHHH-------HHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGG-
T ss_pred             ----H-HHHHHHHHHhcCCccceeeCCCCCCChH-------HHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHh-
Confidence                0 0000  01 1234555555544321100       11233455667788888888877654321100000011 


Q ss_pred             cccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCC
Q 014150          297 PCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPE  339 (430)
Q Consensus       297 ~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~  339 (430)
                      ..++|+.|+++.+..+......+...++.+|+|++|+|.++.-
T Consensus       209 ~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i  251 (372)
T 3un9_A          209 RNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL  251 (372)
T ss_dssp             GCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred             cCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence            2347888888666555555556777788899999999988764

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.19  E-value=2.5e-06  Score=85.73  Aligned_cols=55  Identities=13%  Similarity=0.062  Sum_probs=23.2

Q ss_pred             ceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeec
Q 014150          148 NLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMN  203 (430)
Q Consensus       148 ~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~  203 (430)
                      +|+.|+++++.+........+++|+.|+|.++.+.+. ....+..+++|+.|.+.+
T Consensus       332 ~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~  386 (562)
T 3a79_B          332 NIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDS-VFQGCSTLKRLQTLILQR  386 (562)
T ss_dssp             CCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTT-TTTTCCSCSSCCEEECCS
T ss_pred             cceEEEccCCCcccccCccCCCCceEEECCCCccccc-hhhhhcccCCCCEEECCC
Confidence            4455555544443221113444555555555444331 112233444555555444

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.18  E-value=4.5e-06  Score=73.39  Aligned_cols=134  Identities=21%  Similarity=0.164  Sum_probs=85.4

Q ss_pred             ccCCCcccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEEEeC
Q 014150          137 YKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDA  214 (430)
Q Consensus       137 ~~lp~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~i~~  214 (430)
                      ..+|..+.  ++|+.|+|++|.+..  +..+..+++|+.|+|.++.+..- ....+..+++|+.|+++++. +..     
T Consensus        32 ~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i-~~~~~~~l~~L~~L~Ls~N~-l~~-----  102 (229)
T 3e6j_A           32 ASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGAL-PVGVFDSLTQLTVLDLGTNQ-LTV-----  102 (229)
T ss_dssp             SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-CCC-----
T ss_pred             CccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCc-ChhhcccCCCcCEEECCCCc-CCc-----
Confidence            45665443  789999999998765  45577899999999999887432 12345678889999888763 211     


Q ss_pred             CCcceEEEeccccceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeehhhcccCCCCC
Q 014150          215 PNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRL  294 (430)
Q Consensus       215 p~L~~L~l~~~~~~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~  294 (430)
                                 .....+..+++|+.|+++.+.....            ...+..+++|++|+|+++.+..+..     ..
T Consensus       103 -----------l~~~~~~~l~~L~~L~Ls~N~l~~l------------p~~~~~l~~L~~L~L~~N~l~~~~~-----~~  154 (229)
T 3e6j_A          103 -----------LPSAVFDRLVHLKELFMCCNKLTEL------------PRGIERLTHLTHLALDQNQLKSIPH-----GA  154 (229)
T ss_dssp             -----------CCTTTTTTCTTCCEEECCSSCCCSC------------CTTGGGCTTCSEEECCSSCCCCCCT-----TT
T ss_pred             -----------cChhHhCcchhhCeEeccCCccccc------------CcccccCCCCCEEECCCCcCCccCH-----HH
Confidence                       1112244667777777764432211            1124678889999988876653221     11


Q ss_pred             CccccccceeEEE
Q 014150          295 PRPCVDLNYLSIR  307 (430)
Q Consensus       295 ~~~~~~L~~L~l~  307 (430)
                      ...+++|+.|++.
T Consensus       155 ~~~l~~L~~L~l~  167 (229)
T 3e6j_A          155 FDRLSSLTHAYLF  167 (229)
T ss_dssp             TTTCTTCCEEECT
T ss_pred             HhCCCCCCEEEee
Confidence            1245678887773

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.17  E-value=8.2e-07  Score=74.01  Aligned_cols=71  Identities=15%  Similarity=0.075  Sum_probs=41.2

Q ss_pred             HhccCCCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCCC
Q 014150          265 FFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEE  340 (430)
Q Consensus       265 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~  340 (430)
                      .+..+++|++|+++.+.+..+......   . .+++|++|+++.+...... ......+..+|+|+.|++..+...
T Consensus        90 ~~~~l~~L~~L~Ls~N~l~~~~~~~~l---~-~l~~L~~L~l~~N~l~~~~-~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A           90 LAEKLPNLTHLNLSGNKLKDISTLEPL---K-KLECLKSLDLFNCEVTNLN-DYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             HHHHCTTCCEEECBSSSCCSSGGGGGG---S-SCSCCCEEECCSSGGGTST-THHHHHHTTCSSCCEETTEETTSC
T ss_pred             HHhhCCCCCEEeccCCccCcchhHHHH---h-cCCCCCEEEeeCCcCcchH-HHHHHHHHhCccCcEecCCCCChh
Confidence            345677888888877765432211111   1 3567887777543221110 012246788999999999987643

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.14  E-value=4.5e-06  Score=84.75  Aligned_cols=66  Identities=26%  Similarity=0.294  Sum_probs=44.5

Q ss_pred             ccCCCcccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccC
Q 014150          137 YKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFD  205 (430)
Q Consensus       137 ~~lp~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~  205 (430)
                      .++|..+-  +++++|+|++|.+..  +.+|.++++|+.|+|+++.+..- -...+.++++|++|.|.++.
T Consensus        44 ~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i-~~~~f~~L~~L~~L~Ls~N~  111 (635)
T 4g8a_A           44 YKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNP  111 (635)
T ss_dssp             SSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCC
T ss_pred             CccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCc-ChhHhcCCCCCCEEEccCCc
Confidence            34555431  468888888887654  45677888888888888876421 12235678888888888763

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.08  E-value=2.4e-06  Score=85.38  Aligned_cols=112  Identities=19%  Similarity=0.114  Sum_probs=53.2

Q ss_pred             CCceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEe
Q 014150          122 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTL  201 (430)
Q Consensus       122 ~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l  201 (430)
                      .+++.+++.....  ..+|..+.  ++|+.|+|++|.+..-+  ..+++|+.|+|+++.++.  +.. +.  .+|+.|.+
T Consensus        59 ~~L~~L~Ls~n~L--~~lp~~l~--~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~--ip~-l~--~~L~~L~L  127 (571)
T 3cvr_A           59 NQFSELQLNRLNL--SSLPDNLP--PQITVLEITQNALISLP--ELPASLEYLDACDNRLST--LPE-LP--ASLKHLDV  127 (571)
T ss_dssp             TTCSEEECCSSCC--SCCCSCCC--TTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC--CCC-CC--TTCCEEEC
T ss_pred             CCccEEEeCCCCC--CccCHhHc--CCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCC--cch-hh--cCCCEEEC
Confidence            3555555543322  22454332  55666666666655422  345666666666665543  222 21  16666666


Q ss_pred             eccCCceEEEEeCCCcceEEEeccccceeeccCCCceEEEEEEE
Q 014150          202 MNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLY  245 (430)
Q Consensus       202 ~~c~~~~~l~i~~p~L~~L~l~~~~~~~~~~~~p~L~~l~i~~~  245 (430)
                      .++.- ..+.-..++|+.|++.++.-...-..+++|+.|+++.+
T Consensus       128 s~N~l-~~lp~~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N  170 (571)
T 3cvr_A          128 DNNQL-TMLPELPALLEYINADNNQLTMLPELPTSLEVLSVRNN  170 (571)
T ss_dssp             CSSCC-SCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS
T ss_pred             CCCcC-CCCCCcCccccEEeCCCCccCcCCCcCCCcCEEECCCC
Confidence            65421 11111345566666654321110013455666666543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.06  E-value=9.2e-06  Score=76.45  Aligned_cols=214  Identities=16%  Similarity=0.109  Sum_probs=118.1

Q ss_pred             HHHHHHHHHHHhCC-CceeEEEEEeccCC-Cc--chHHHHHHHH-HhCCceEEEEEecCCC--------cccCCCccccc
Q 014150           80 KLVNIVDHVLLLHN-GPILKFKLSHRDLL-GV--SDIDRWILYM-SRSCVKEFILEIWKGQ--------RYKVPSSLFLC  146 (430)
Q Consensus        80 ~~~~~v~~~l~~~~-~~l~~l~l~~~~~~-~~--~~v~~wl~~~-~~~~l~~l~l~~~~~~--------~~~lp~~~~~~  146 (430)
                      .+.+.+.+++...+ ..++.+.+....+. ..  ..+..+...+ .-++++.|.+......        ...+...+..+
T Consensus        92 ~~~~~~~~fl~~~~~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~  171 (362)
T 2ra8_A           92 EGVNLMDKILKDKKLPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAM  171 (362)
T ss_dssp             TTCCHHHHHHHCTTGGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTC
T ss_pred             cHHHHHHHHhcCCCchhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcC
Confidence            34456677777654 34778877754432 11  1233333211 1268999987432111        01233444567


Q ss_pred             CceeEEEEeeee-ecCCCCCCCCCCcceEEeeeEEechhhHHHHh-hcCccccceEeeccCCceEEEEeCCCcceEEEec
Q 014150          147 QNLIHLELFNCL-LKPPSTFKGFRNLKSLDLQHITLSQDVFENLI-SSSPTLERLTLMNFDGFTHLNIDAPNLQFFDIGG  224 (430)
Q Consensus       147 ~~L~~L~L~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~-s~cp~Le~L~l~~c~~~~~l~i~~p~L~~L~l~~  224 (430)
                      |+|++|.|+++. +..+ .+ ..++|++|+|..+.++++.+..+. +.+|+|++|.|..+.....   ....++.+    
T Consensus       172 P~L~~L~L~g~~~l~l~-~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~---~~~~~~~l----  242 (362)
T 2ra8_A          172 PLLNNLKIKGTNNLSIG-KK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYG---FDGDMNVF----  242 (362)
T ss_dssp             TTCCEEEEECCBTCBCC-SC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGT---CCSCGGGT----
T ss_pred             CCCcEEEEeCCCCceec-cc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccc---cchhHHHH----
Confidence            999999998873 2222 23 489999999998888887777665 3699999999863211000   00000000    


Q ss_pred             cccceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHh--ccCCCccEEEEeeeeeehhhcccCCCCCCccccccc
Q 014150          225 VFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFF--VHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLN  302 (430)
Q Consensus       225 ~~~~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~  302 (430)
                       ...+....+|+|+.|++..+...         + .....+.  ..+|+|++|+|+.+.+...........+ ..+++|+
T Consensus       243 -~~~l~~~~~p~Lr~L~L~~~~i~---------~-~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L-~~l~~L~  310 (362)
T 2ra8_A          243 -RPLFSKDRFPNLKWLGIVDAEEQ---------N-VVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHV-DKIKHLK  310 (362)
T ss_dssp             -GGGSCTTTCTTCCEEEEESCTTH---------H-HHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTH-HHHTTCS
T ss_pred             -HHHHhcCCCCCcCEEeCCCCCCc---------h-HHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhc-ccCCcce
Confidence             00111135788888888654321         0 0111111  2578999999988765432111111111 2578999


Q ss_pred             eeEEEEeeCChh
Q 014150          303 YLSIRINFNDLE  314 (430)
Q Consensus       303 ~L~l~~~~~~~~  314 (430)
                      .|+++.+..+..
T Consensus       311 ~L~L~~n~i~d~  322 (362)
T 2ra8_A          311 FINMKYNYLSDE  322 (362)
T ss_dssp             EEECCSBBCCHH
T ss_pred             EEECCCCcCCHH
Confidence            999976655543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.05  E-value=1.4e-06  Score=71.06  Aligned_cols=55  Identities=18%  Similarity=0.170  Sum_probs=34.5

Q ss_pred             CceeEEEEeeeeec--C-CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeecc
Q 014150          147 QNLIHLELFNCLLK--P-PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNF  204 (430)
Q Consensus       147 ~~L~~L~L~~~~~~--~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c  204 (430)
                      ++|+.|++++|.+.  . +..+..+++|+.|++.++.+.+-   ..+..+++|+.|.+.++
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n   74 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDN   74 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSS
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCC
Confidence            56777777777665  2 34455677777777777665433   33455666666666654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.05  E-value=2.8e-06  Score=78.43  Aligned_cols=187  Identities=13%  Similarity=0.049  Sum_probs=117.2

Q ss_pred             ceeEEEEEeccCCCc--chHHHHHHHHHhCCceEEEEEecCCCcccCC----CcccccCceeEEEEeeeeecC--CCCCC
Q 014150           95 PILKFKLSHRDLLGV--SDIDRWILYMSRSCVKEFILEIWKGQRYKVP----SSLFLCQNLIHLELFNCLLKP--PSTFK  166 (430)
Q Consensus        95 ~l~~l~l~~~~~~~~--~~v~~wl~~~~~~~l~~l~l~~~~~~~~~lp----~~~~~~~~L~~L~L~~~~~~~--~~~~~  166 (430)
                      .++.+.+......+.  ..+..    ....+++.|++....... ..+    ..+..+++|++|+|++|.+..  +..+.
T Consensus        92 ~L~~L~l~~n~l~~~~~~~~~~----~~~~~L~~L~Ls~n~i~~-~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~  166 (310)
T 4glp_A           92 RLKELTLEDLKITGTMPPLPLE----ATGLALSSLRLRNVSWAT-GRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVR  166 (310)
T ss_dssp             CCCEEEEESCCCBSCCCCCSSS----CCCBCCSSCEEESCCCSS-TTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCC
T ss_pred             ceeEEEeeCCEeccchhhhhhh----ccCCCCCEEEeecccccc-hhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhc
Confidence            388899887643221  11100    123578888887554321 111    122357899999999998765  34677


Q ss_pred             CCCCcceEEeeeEEech-hhHH--HHhhcCccccceEeeccCCceEEE-------EeCCCcceEEEecccc-ce---eec
Q 014150          167 GFRNLKSLDLQHITLSQ-DVFE--NLISSSPTLERLTLMNFDGFTHLN-------IDAPNLQFFDIGGVFD-DV---TFE  232 (430)
Q Consensus       167 ~~~~L~~L~L~~~~~~~-~~l~--~l~s~cp~Le~L~l~~c~~~~~l~-------i~~p~L~~L~l~~~~~-~~---~~~  232 (430)
                      .+++|++|+|+++.+.. ..+.  ..+..+|+|++|.+.+|.- +.+.       -..++|+.|++.++.- ..   .+.
T Consensus       167 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~  245 (310)
T 4glp_A          167 AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM-ETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAP  245 (310)
T ss_dssp             CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC-CCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCS
T ss_pred             cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC-CchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHH
Confidence            89999999999998543 2222  2235789999999998743 2111       1348999999986421 11   133


Q ss_pred             cC---CCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEE
Q 014150          233 NT---FHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRI  308 (430)
Q Consensus       233 ~~---p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  308 (430)
                      .+   ++|+.|+++.+......            .  .-.++|+.|+++.+.+..+.   .+.    .+++|+.|+++.
T Consensus       246 ~~~~~~~L~~L~Ls~N~l~~lp------------~--~~~~~L~~L~Ls~N~l~~~~---~~~----~l~~L~~L~L~~  303 (310)
T 4glp_A          246 RCMWSSALNSLNLSFAGLEQVP------------K--GLPAKLRVLDLSSNRLNRAP---QPD----ELPEVDNLTLDG  303 (310)
T ss_dssp             SCCCCTTCCCEECCSSCCCSCC------------S--CCCSCCSCEECCSCCCCSCC---CTT----SCCCCSCEECSS
T ss_pred             hccCcCcCCEEECCCCCCCchh------------h--hhcCCCCEEECCCCcCCCCc---hhh----hCCCccEEECcC
Confidence            33   79999999765432110            0  11279999999999876432   222    467899998843

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.04  E-value=3.5e-06  Score=85.02  Aligned_cols=143  Identities=24%  Similarity=0.147  Sum_probs=100.0

Q ss_pred             hCCceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceE
Q 014150          121 RSCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLT  200 (430)
Q Consensus       121 ~~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~  200 (430)
                      .++++.|++..+..  ..++. +..+++|+.|+|++|.+...+.+..+++|+.|+|+++.+.+-  . -+..|++|+.|.
T Consensus        64 l~~L~~L~Ls~N~l--~~~~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l--~-~l~~l~~L~~L~  137 (605)
T 1m9s_A           64 LPNVTKLFLNGNKL--TDIKP-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDI--N-GLVHLPQLESLY  137 (605)
T ss_dssp             CTTCCEEECTTSCC--CCCGG-GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCCC--G-GGGGCTTCSEEE
T ss_pred             CCCCCEEEeeCCCC--CCChh-hccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCCC--c-cccCCCccCEEE
Confidence            36788877754322  23443 667889999999999888766788899999999999887642  2 266789999999


Q ss_pred             eeccCCceEEE--EeCCCcceEEEecccc-c-eeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEE
Q 014150          201 LMNFDGFTHLN--IDAPNLQFFDIGGVFD-D-VTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLE  276 (430)
Q Consensus       201 l~~c~~~~~l~--i~~p~L~~L~l~~~~~-~-~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~  276 (430)
                      |++|.- ..+.  -..++|+.|.+.++.- . ..+..+++|+.|+++.+...+.             ..+..+++|+.|.
T Consensus       138 Ls~N~l-~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~l-------------~~l~~l~~L~~L~  203 (605)
T 1m9s_A          138 LGNNKI-TDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDL-------------RALAGLKNLDVLE  203 (605)
T ss_dssp             CCSSCC-CCCGGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBC-------------GGGTTCTTCSEEE
T ss_pred             CCCCcc-CCchhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCCCCC-------------hHHccCCCCCEEE
Confidence            988742 2221  1247888998876421 1 1267889999999876533211             1267889999999


Q ss_pred             Eeeeeee
Q 014150          277 IQSYFLK  283 (430)
Q Consensus       277 l~~~~~~  283 (430)
                      |+.+.+.
T Consensus       204 L~~N~l~  210 (605)
T 1m9s_A          204 LFSQECL  210 (605)
T ss_dssp             CCSEEEE
T ss_pred             ccCCcCc
Confidence            9988764

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=98.00  E-value=2.9e-06  Score=76.42  Aligned_cols=37  Identities=22%  Similarity=0.551  Sum_probs=34.5

Q ss_pred             CcccCCCcHHHHHHHHcCCCchhhh-hhhhhhhhhHhh
Q 014150           17 LDRLSSLPAHVIDQILSQLPIRDAV-RTSVLSKKWRYK   53 (430)
Q Consensus        17 ~d~is~LPdelL~~Ils~L~~~d~~-r~s~vskrWr~l   53 (430)
                      ...+..||||+|..||++||.++++ |++.|||+|+.+
T Consensus        48 ~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l   85 (297)
T 2e31_A           48 VEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKEL   85 (297)
T ss_dssp             CCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHH
T ss_pred             ccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHH
Confidence            3578899999999999999999999 999999999986

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=97.99  E-value=4.5e-06  Score=72.92  Aligned_cols=151  Identities=17%  Similarity=0.117  Sum_probs=82.9

Q ss_pred             cCCCcccccCceeEEEEeeeeecC---CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEEEeC
Q 014150          138 KVPSSLFLCQNLIHLELFNCLLKP---PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDA  214 (430)
Q Consensus       138 ~lp~~~~~~~~L~~L~L~~~~~~~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~i~~  214 (430)
                      .+|..+.  +.++.|+|+++.+..   +..|..+++|+.|+|.++.++.- ....+..+++|++|.+.++.-. .     
T Consensus        25 ~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i-~~~~~~~l~~L~~L~Ls~N~l~-~-----   95 (220)
T 2v70_A           25 KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDI-EEGAFEGASGVNEILLTSNRLE-N-----   95 (220)
T ss_dssp             SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCC-C-----
T ss_pred             cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEE-CHHHhCCCCCCCEEECCCCccC-c-----
Confidence            4555432  456788888887654   22366788888888888776532 1224566788888888765321 1     


Q ss_pred             CCcceEEEeccccceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeehhhcccCCCCC
Q 014150          215 PNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRL  294 (430)
Q Consensus       215 p~L~~L~l~~~~~~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~  294 (430)
                                 ...-.+..+++|+.|+++.+......           ...+.++++|+.|+|+.+.+..+..    ..+
T Consensus        96 -----------~~~~~~~~l~~L~~L~Ls~N~l~~~~-----------~~~~~~l~~L~~L~L~~N~l~~~~~----~~~  149 (220)
T 2v70_A           96 -----------VQHKMFKGLESLKTLMLRSNRITCVG-----------NDSFIGLSSVRLLSLYDNQITTVAP----GAF  149 (220)
T ss_dssp             -----------CCGGGGTTCSSCCEEECTTSCCCCBC-----------TTSSTTCTTCSEEECTTSCCCCBCT----TTT
T ss_pred             -----------cCHhHhcCCcCCCEEECCCCcCCeEC-----------HhHcCCCccCCEEECCCCcCCEECH----HHh
Confidence                       11112445666776666543322110           1224567888888888776653311    111


Q ss_pred             CccccccceeEEEEe-eCChhhHHHHHHHHh
Q 014150          295 PRPCVDLNYLSIRIN-FNDLEENLAALCLLR  324 (430)
Q Consensus       295 ~~~~~~L~~L~l~~~-~~~~~~~~~l~~ll~  324 (430)
                      . .+++|+.|++... +...-.+.++...++
T Consensus       150 ~-~l~~L~~L~L~~N~l~c~c~l~~l~~~~~  179 (220)
T 2v70_A          150 D-TLHSLSTLNLLANPFNCNCYLAWLGEWLR  179 (220)
T ss_dssp             T-TCTTCCEEECCSCCEECSGGGHHHHHHHH
T ss_pred             c-CCCCCCEEEecCcCCcCCCchHHHHHHHH
Confidence            1 4567888877322 111123334555554

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=97.93  E-value=4.6e-06  Score=78.78  Aligned_cols=134  Identities=24%  Similarity=0.212  Sum_probs=68.0

Q ss_pred             cCCCcccccCceeEEEEeeeeecC--CCCCC-CCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEEE--
Q 014150          138 KVPSSLFLCQNLIHLELFNCLLKP--PSTFK-GFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNI--  212 (430)
Q Consensus       138 ~lp~~~~~~~~L~~L~L~~~~~~~--~~~~~-~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~i--  212 (430)
                      .+|..+.  +.++.|+|++|.+..  +..+. ++++|+.|+|.++.+..-. ...+..+++|+.|+|+++. +..+.-  
T Consensus        32 ~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~-l~~~~~~~  107 (361)
T 2xot_A           32 NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFIS-SEAFVPVPNLRYLDLSSNH-LHTLDEFL  107 (361)
T ss_dssp             SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSC-CCEECTTT
T ss_pred             ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccC-hhhccCCCCCCEEECCCCc-CCcCCHHH
Confidence            3554332  356777777776654  23344 6777777777777654321 2235567777777777653 222211  


Q ss_pred             --eCCCcceEEEeccc----cceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeee
Q 014150          213 --DAPNLQFFDIGGVF----DDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLK  283 (430)
Q Consensus       213 --~~p~L~~L~l~~~~----~~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  283 (430)
                        ..++|+.|.+.++.    ....+.++++|+.|+++.+......        .....-+..+++|+.|+|+++.+.
T Consensus       108 ~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~--------~~~~~~~~~l~~L~~L~L~~N~l~  176 (361)
T 2xot_A          108 FSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFP--------VELIKDGNKLPKLMLLDLSSNKLK  176 (361)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCC--------GGGTC----CTTCCEEECCSSCCC
T ss_pred             hCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeC--------HHHhcCcccCCcCCEEECCCCCCC
Confidence              12455555555421    1123456677777766544322110        000000145677777777766554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=97.91  E-value=9.1e-06  Score=70.95  Aligned_cols=152  Identities=15%  Similarity=0.125  Sum_probs=80.1

Q ss_pred             eEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEEEeCCCcceEEEeccccce
Q 014150          150 IHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDIGGVFDDV  229 (430)
Q Consensus       150 ~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~i~~p~L~~L~l~~~~~~~  229 (430)
                      +.++++++.+...+. .-.+.++.|+|.++.+..-.....+..+++|+.|.+.++. +..+                ..-
T Consensus        14 ~~l~~s~n~l~~iP~-~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i----------------~~~   75 (220)
T 2v70_A           14 TTVDCSNQKLNKIPE-HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDI----------------EEG   75 (220)
T ss_dssp             TEEECCSSCCSSCCS-CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-CCEE----------------CTT
T ss_pred             CEeEeCCCCcccCcc-CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-CCEE----------------CHH
Confidence            366777666544211 1234667788777766533222335667777777777653 2111                111


Q ss_pred             eeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEe
Q 014150          230 TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRIN  309 (430)
Q Consensus       230 ~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  309 (430)
                      .+..+++|+.|+++.+.....           ....+.++++|++|.|+.+.+..+..    ..+. .+++|+.|+++..
T Consensus        76 ~~~~l~~L~~L~Ls~N~l~~~-----------~~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~-~l~~L~~L~L~~N  139 (220)
T 2v70_A           76 AFEGASGVNEILLTSNRLENV-----------QHKMFKGLESLKTLMLRSNRITCVGN----DSFI-GLSSVRLLSLYDN  139 (220)
T ss_dssp             TTTTCTTCCEEECCSSCCCCC-----------CGGGGTTCSSCCEEECTTSCCCCBCT----TSST-TCTTCSEEECTTS
T ss_pred             HhCCCCCCCEEECCCCccCcc-----------CHhHhcCCcCCCEEECCCCcCCeECH----hHcC-CCccCCEEECCCC
Confidence            244566677776654332211           01235667778888887776543211    1111 3557777777332


Q ss_pred             eCChhhHHHHHHHHhcCCCccEEEEeecCC
Q 014150          310 FNDLEENLAALCLLRSSPNLQELEMLARPE  339 (430)
Q Consensus       310 ~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~  339 (430)
                      .....    .+..+..+++|+.|++.+++-
T Consensus       140 ~l~~~----~~~~~~~l~~L~~L~L~~N~l  165 (220)
T 2v70_A          140 QITTV----APGAFDTLHSLSTLNLLANPF  165 (220)
T ss_dssp             CCCCB----CTTTTTTCTTCCEEECCSCCE
T ss_pred             cCCEE----CHHHhcCCCCCCEEEecCcCC
Confidence            21110    123456677788887777653

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=97.88  E-value=3.1e-06  Score=75.36  Aligned_cols=34  Identities=29%  Similarity=0.348  Sum_probs=32.2

Q ss_pred             cCCCcHHHHHHHHcCCCchhhhhhhhhhhhhHhh
Q 014150           20 LSSLPAHVIDQILSQLPIRDAVRTSVLSKKWRYK   53 (430)
Q Consensus        20 is~LPdelL~~Ils~L~~~d~~r~s~vskrWr~l   53 (430)
                      ++.||+||+.+||+||+.+|+++++.|||+||.+
T Consensus         5 l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~l   38 (312)
T 3l2o_B            5 LTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNET   38 (312)
T ss_dssp             HHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHH
T ss_pred             hHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            6789999999999999999999999999999973

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=97.86  E-value=5.8e-06  Score=80.62  Aligned_cols=175  Identities=18%  Similarity=0.128  Sum_probs=113.1

Q ss_pred             CCceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEe
Q 014150          122 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTL  201 (430)
Q Consensus       122 ~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l  201 (430)
                      .+++.+++..+..  ..+|..   .++|+.|++++|.+..-+.+..+++|+.|++.++.+..  +.   ...++|+.|.+
T Consensus       195 ~~L~~L~l~~N~l--~~l~~~---~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~--l~---~~~~~L~~L~l  264 (454)
T 1jl5_A          195 PFLTAIYADNNSL--KKLPDL---PLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKT--LP---DLPPSLEALNV  264 (454)
T ss_dssp             TTCCEEECCSSCC--SSCCCC---CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS--CC---SCCTTCCEEEC
T ss_pred             CCCCEEECCCCcC--CcCCCC---cCcccEEECcCCcCCcccccCCCCCCCEEECCCCcCCc--cc---ccccccCEEEC
Confidence            5677777754432  234442   25899999999987764468899999999999988753  11   23588999999


Q ss_pred             eccCCceEEEEeCCCcceEEEeccccceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccC-CCccEEEEeee
Q 014150          202 MNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHL-PHIRRLEIQSY  280 (430)
Q Consensus       202 ~~c~~~~~l~i~~p~L~~L~l~~~~~~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~  280 (430)
                      .++.- ..+.-..++|+.|++.++.-.-.-.-.++|+.|+++.+....                +..+ ++|++|+++.+
T Consensus       265 ~~N~l-~~l~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~----------------i~~~~~~L~~L~Ls~N  327 (454)
T 1jl5_A          265 RDNYL-TDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRS----------------LCDLPPSLEELNVSNN  327 (454)
T ss_dssp             CSSCC-SCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSE----------------ECCCCTTCCEEECCSS
T ss_pred             CCCcc-cccCcccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCc----------------ccCCcCcCCEEECCCC
Confidence            98742 223223478999998874321100123678888886443210                1233 58999999887


Q ss_pred             eeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCCC
Q 014150          281 FLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEE  340 (430)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~  340 (430)
                      .+.         .+|..+++|+.|+++.+...     .++.   .+++|+.|+++++.-.
T Consensus       328 ~l~---------~lp~~~~~L~~L~L~~N~l~-----~lp~---~l~~L~~L~L~~N~l~  370 (454)
T 1jl5_A          328 KLI---------ELPALPPRLERLIASFNHLA-----EVPE---LPQNLKQLHVEYNPLR  370 (454)
T ss_dssp             CCS---------CCCCCCTTCCEEECCSSCCS-----CCCC---CCTTCCEEECCSSCCS
T ss_pred             ccc---------cccccCCcCCEEECCCCccc-----cccc---hhhhccEEECCCCCCC
Confidence            654         23334678999988544322     1222   4789999999887643

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=97.85  E-value=6.3e-06  Score=83.71  Aligned_cols=120  Identities=18%  Similarity=0.211  Sum_probs=81.3

Q ss_pred             CCceEEEEEecCCCcccCCC-cccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccc
Q 014150          122 SCVKEFILEIWKGQRYKVPS-SLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLER  198 (430)
Q Consensus       122 ~~l~~l~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~  198 (430)
                      ..+++|++.....  ..+|. .+..+++|++|+|++|.+..  +.+|.++++|++|+|+++.+..- -...+.++++|++
T Consensus        52 ~~~~~LdLs~N~i--~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l-~~~~f~~L~~L~~  128 (635)
T 4g8a_A           52 FSTKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQK  128 (635)
T ss_dssp             TTCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE-CGGGGTTCTTCCE
T ss_pred             cCCCEEEeeCCCC--CCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCC-CHHHhcCCCCCCE
Confidence            5788888754332  34554 45678999999999998764  45688999999999999986532 1235678999999


Q ss_pred             eEeeccCCceEEE---E-eCCCcceEEEeccc-c----ceeeccCCCceEEEEEEE
Q 014150          199 LTLMNFDGFTHLN---I-DAPNLQFFDIGGVF-D----DVTFENTFHLALVSIGLY  245 (430)
Q Consensus       199 L~l~~c~~~~~l~---i-~~p~L~~L~l~~~~-~----~~~~~~~p~L~~l~i~~~  245 (430)
                      |.+.++.- ..+.   + ..++|+.|++.+.. .    ...+..+++|+.|+++.+
T Consensus       129 L~Ls~N~l-~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N  183 (635)
T 4g8a_A          129 LVAVETNL-ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN  183 (635)
T ss_dssp             EECTTSCC-CCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred             EECCCCcC-CCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc
Confidence            99998742 2111   1 23677777776532 1    123455677777776543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=97.84  E-value=1.1e-05  Score=70.48  Aligned_cols=130  Identities=21%  Similarity=0.196  Sum_probs=82.4

Q ss_pred             CCceEEEEEecCCCcccCCC-cccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccc
Q 014150          122 SCVKEFILEIWKGQRYKVPS-SLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLER  198 (430)
Q Consensus       122 ~~l~~l~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~  198 (430)
                      .++++|++.....  ..++. .+..+++|+.|+|++|.+..  +..|.++++|+.|+|+++.+..- -..++.++++|+.
T Consensus        32 ~~l~~L~l~~n~i--~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~  108 (220)
T 2v9t_B           32 ETITEIRLEQNTI--KVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL-PKSLFEGLFSLQL  108 (220)
T ss_dssp             TTCCEEECCSSCC--CEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCC-CTTTTTTCTTCCE
T ss_pred             cCCCEEECCCCcC--CCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCcc-CHhHccCCCCCCE
Confidence            4677777754432  23444 45567899999999998754  56788999999999999987632 2334667899999


Q ss_pred             eEeeccCCceEEEEeCCCcceEEEeccccceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEe
Q 014150          199 LTLMNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQ  278 (430)
Q Consensus       199 L~l~~c~~~~~l~i~~p~L~~L~l~~~~~~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~  278 (430)
                      |.+.++.- ..+                ....+..+++|+.|+++.+......           ...+..+++|+.|+++
T Consensus       109 L~L~~N~l-~~~----------------~~~~~~~l~~L~~L~L~~N~l~~~~-----------~~~~~~l~~L~~L~L~  160 (220)
T 2v9t_B          109 LLLNANKI-NCL----------------RVDAFQDLHNLNLLSLYDNKLQTIA-----------KGTFSPLRAIQTMHLA  160 (220)
T ss_dssp             EECCSSCC-CCC----------------CTTTTTTCTTCCEEECCSSCCSCCC-----------TTTTTTCTTCCEEECC
T ss_pred             EECCCCCC-CEe----------------CHHHcCCCCCCCEEECCCCcCCEEC-----------HHHHhCCCCCCEEEeC
Confidence            99987632 111                1112445666666666543322110           1124566777777777


Q ss_pred             eeee
Q 014150          279 SYFL  282 (430)
Q Consensus       279 ~~~~  282 (430)
                      ++.+
T Consensus       161 ~N~~  164 (220)
T 2v9t_B          161 QNPF  164 (220)
T ss_dssp             SSCE
T ss_pred             CCCc
Confidence            6654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=97.83  E-value=4e-06  Score=71.93  Aligned_cols=64  Identities=27%  Similarity=0.275  Sum_probs=44.6

Q ss_pred             CCCcccccCceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeecc
Q 014150          139 VPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNF  204 (430)
Q Consensus       139 lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c  204 (430)
                      +|..+..+++|+.|++++|.+...+.+.++++|+.|+|.++.+.  .+...+..+++|+.|.+.++
T Consensus        40 l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~--~l~~~~~~~~~L~~L~L~~N  103 (198)
T 1ds9_A           40 MDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIK--KIENLDAVADTLEELWISYN  103 (198)
T ss_dssp             CHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEEC--SCSSHHHHHHHCSEEEEEEE
T ss_pred             hhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcc--cccchhhcCCcCCEEECcCC
Confidence            44456667888888888887766446667788888888888775  23444555677777777765

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=97.81  E-value=1.5e-05  Score=68.81  Aligned_cols=130  Identities=16%  Similarity=0.098  Sum_probs=83.2

Q ss_pred             CCceEEEEEecCCCcccCCCc-ccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccc
Q 014150          122 SCVKEFILEIWKGQRYKVPSS-LFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLER  198 (430)
Q Consensus       122 ~~l~~l~l~~~~~~~~~lp~~-~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~  198 (430)
                      .+++.+++.....  ..++.. +..+++|++|+++++.+..  +..|..+++|++|+|.++.+..- ....+..+++|+.
T Consensus        28 ~~l~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~  104 (208)
T 2o6s_A           28 AQTTYLDLETNSL--KSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL-PNGVFDKLTQLKE  104 (208)
T ss_dssp             TTCSEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCE
T ss_pred             CCCcEEEcCCCcc--CcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCcc-CHhHhcCccCCCE
Confidence            4677777755432  245544 4568999999999998765  23467899999999999987632 2334677899999


Q ss_pred             eEeeccCCceEEEEeCCCcceEEEeccccceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEe
Q 014150          199 LTLMNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQ  278 (430)
Q Consensus       199 L~l~~c~~~~~l~i~~p~L~~L~l~~~~~~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~  278 (430)
                      |.+.++. +..+                ....+..+++|+.|+++.+......           ...+..+++|++|+++
T Consensus       105 L~L~~N~-l~~~----------------~~~~~~~l~~L~~L~l~~N~l~~~~-----------~~~~~~l~~L~~L~l~  156 (208)
T 2o6s_A          105 LALNTNQ-LQSL----------------PDGVFDKLTQLKDLRLYQNQLKSVP-----------DGVFDRLTSLQYIWLH  156 (208)
T ss_dssp             EECCSSC-CCCC----------------CTTTTTTCTTCCEEECCSSCCSCCC-----------TTTTTTCTTCCEEECC
T ss_pred             EEcCCCc-Cccc----------------CHhHhccCCcCCEEECCCCccceeC-----------HHHhccCCCccEEEec
Confidence            9998753 2111                1112445677777777544221110           1225667888888887


Q ss_pred             eeee
Q 014150          279 SYFL  282 (430)
Q Consensus       279 ~~~~  282 (430)
                      ++.+
T Consensus       157 ~N~~  160 (208)
T 2o6s_A          157 DNPW  160 (208)
T ss_dssp             SCCB
T ss_pred             CCCe
Confidence            7643

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.80  E-value=6.3e-06  Score=68.54  Aligned_cols=86  Identities=9%  Similarity=0.062  Sum_probs=64.2

Q ss_pred             CCceEEEEEecCCCcccCCCcccccCceeEEEEeeee-ecCC--CCCCC----CCCcceEEeeeEE-echhhHHHHhhcC
Q 014150          122 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCL-LKPP--STFKG----FRNLKSLDLQHIT-LSQDVFENLISSS  193 (430)
Q Consensus       122 ~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~-~~~~--~~~~~----~~~L~~L~L~~~~-~~~~~l~~l~s~c  193 (430)
                      ..++++++..+......+.. +..|++|++|+|++|. +.+.  ..+..    +++|+.|+|++|. +++..+..+ +.|
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~-L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L-~~~  138 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDH-MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL-HHF  138 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGG-GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG-GGC
T ss_pred             ceEeEEeCcCCCccHHHHHH-hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH-hcC
Confidence            35788888776544333433 4679999999999995 4431  11223    3689999999997 999988775 579


Q ss_pred             ccccceEeeccCCceE
Q 014150          194 PTLERLTLMNFDGFTH  209 (430)
Q Consensus       194 p~Le~L~l~~c~~~~~  209 (430)
                      ++|++|.|.+|+.++.
T Consensus       139 ~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          139 RNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             TTCCEEEEESCTTCCC
T ss_pred             CCCCEEECCCCCCCCc
Confidence            9999999999987753

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=97.80  E-value=6.7e-06  Score=73.94  Aligned_cols=141  Identities=17%  Similarity=0.154  Sum_probs=87.5

Q ss_pred             CCceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEe
Q 014150          122 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTL  201 (430)
Q Consensus       122 ~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l  201 (430)
                      .+++.+++..+..  ..++ .+..+++|+.|+|++|.+.....+..+++|+.|+|+++.+.+-  ..+ .. ++|+.|.+
T Consensus        41 ~~L~~L~l~~n~i--~~l~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~l--~~~-~~-~~L~~L~L  113 (263)
T 1xeu_A           41 SGVQNFNGDNSNI--QSLA-GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNL--NGI-PS-ACLSRLFL  113 (263)
T ss_dssp             TTCSEEECTTSCC--CCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSCC--TTC-CC-SSCCEEEC
T ss_pred             CcCcEEECcCCCc--ccch-HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCccCCc--Ccc-cc-CcccEEEc
Confidence            5667666654322  2344 4556778888888887776533367778888888888776531  111 12 77888887


Q ss_pred             eccCCceEEE--EeCCCcceEEEeccc-cce-eeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEE
Q 014150          202 MNFDGFTHLN--IDAPNLQFFDIGGVF-DDV-TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEI  277 (430)
Q Consensus       202 ~~c~~~~~l~--i~~p~L~~L~l~~~~-~~~-~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l  277 (430)
                      .++.- ..+.  -..++|+.|++.++. ..+ .+..+++|+.|+++.+...+.             ..+..+++|+.|++
T Consensus       114 ~~N~l-~~~~~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~-------------~~l~~l~~L~~L~l  179 (263)
T 1xeu_A          114 DNNEL-RDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNT-------------GGLTRLKKVNWIDL  179 (263)
T ss_dssp             CSSCC-SBSGGGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBC-------------TTSTTCCCCCEEEE
T ss_pred             cCCcc-CCChhhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcch-------------HHhccCCCCCEEeC
Confidence            76631 1111  123677777776532 111 356788999998865433211             33678899999999


Q ss_pred             eeeeee
Q 014150          278 QSYFLK  283 (430)
Q Consensus       278 ~~~~~~  283 (430)
                      +++.+.
T Consensus       180 ~~N~~~  185 (263)
T 1xeu_A          180 TGQKCV  185 (263)
T ss_dssp             EEEEEE
T ss_pred             CCCccc
Confidence            988764

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=97.78  E-value=4.7e-06  Score=70.01  Aligned_cols=58  Identities=10%  Similarity=0.027  Sum_probs=32.5

Q ss_pred             cccCceeEEEEeeeeecCCCCCCCC-CCcceEEeeeEEechhhHHHHhhcCccccceEeecc
Q 014150          144 FLCQNLIHLELFNCLLKPPSTFKGF-RNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNF  204 (430)
Q Consensus       144 ~~~~~L~~L~L~~~~~~~~~~~~~~-~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c  204 (430)
                      ..+++|+.|++++|.+...+.+..+ ++|+.|+|+++.+.+-   ..+..++.|+.|.++++
T Consensus        16 ~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N   74 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNN   74 (176)
T ss_dssp             ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSS
T ss_pred             CCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCC
Confidence            3456677777777666543333333 3667777766665431   23445566666666554

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=97.74  E-value=2.6e-05  Score=76.03  Aligned_cols=176  Identities=15%  Similarity=-0.001  Sum_probs=112.4

Q ss_pred             CceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEee
Q 014150          123 CVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLM  202 (430)
Q Consensus       123 ~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~  202 (430)
                      +++.+++.....  ..+| .+..+++|+.|++++|.+..-+.  ..++|+.|++.++.+..  +.. +..+++|+.|.+.
T Consensus       174 ~L~~L~L~~n~l--~~l~-~~~~l~~L~~L~l~~N~l~~l~~--~~~~L~~L~l~~n~l~~--lp~-~~~l~~L~~L~l~  245 (454)
T 1jl5_A          174 SLEFIAAGNNQL--EELP-ELQNLPFLTAIYADNNSLKKLPD--LPLSLESIVAGNNILEE--LPE-LQNLPFLTTIYAD  245 (454)
T ss_dssp             TCCEEECCSSCC--SSCC-CCTTCTTCCEEECCSSCCSSCCC--CCTTCCEEECCSSCCSS--CCC-CTTCTTCCEEECC
T ss_pred             cccEEECcCCcC--CcCc-cccCCCCCCEEECCCCcCCcCCC--CcCcccEEECcCCcCCc--ccc-cCCCCCCCEEECC
Confidence            555555543322  2355 46788999999999998765222  24699999999998762  332 6789999999999


Q ss_pred             ccCCceEEEEeCCCcceEEEeccccceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeee
Q 014150          203 NFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFL  282 (430)
Q Consensus       203 ~c~~~~~l~i~~p~L~~L~l~~~~~~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  282 (430)
                      ++.- ..+.-..++|+.|++.++.-.-.-...++|+.++++.+.....               -...++|+.|+++.+.+
T Consensus       246 ~N~l-~~l~~~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~l---------------~~~~~~L~~L~l~~N~l  309 (454)
T 1jl5_A          246 NNLL-KTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGL---------------SELPPNLYYLNASSNEI  309 (454)
T ss_dssp             SSCC-SSCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEE---------------SCCCTTCCEEECCSSCC
T ss_pred             CCcC-CcccccccccCEEECCCCcccccCcccCcCCEEECcCCccCcc---------------cCcCCcCCEEECcCCcC
Confidence            8642 2222234799999998743211112347899998875432210               01126899999998765


Q ss_pred             ehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCC
Q 014150          283 KYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPE  339 (430)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~  339 (430)
                      ..+         +...++|+.|+++.+...     +++   ..+++|+.|+++++.-
T Consensus       310 ~~i---------~~~~~~L~~L~Ls~N~l~-----~lp---~~~~~L~~L~L~~N~l  349 (454)
T 1jl5_A          310 RSL---------CDLPPSLEELNVSNNKLI-----ELP---ALPPRLERLIASFNHL  349 (454)
T ss_dssp             SEE---------CCCCTTCCEEECCSSCCS-----CCC---CCCTTCCEEECCSSCC
T ss_pred             Ccc---------cCCcCcCCEEECCCCccc-----ccc---ccCCcCCEEECCCCcc
Confidence            421         111248999998543221     122   2368999999988754

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=97.74  E-value=1.3e-05  Score=67.19  Aligned_cols=132  Identities=19%  Similarity=0.159  Sum_probs=81.9

Q ss_pred             CCceEEEEEecCCCcccCCCccccc-CceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceE
Q 014150          122 SCVKEFILEIWKGQRYKVPSSLFLC-QNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLT  200 (430)
Q Consensus       122 ~~l~~l~l~~~~~~~~~lp~~~~~~-~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~  200 (430)
                      .+++++.+..+...  .+|. +..+ ++|+.|++++|.+.....+..+++|+.|+|+++.+..- ...++..+++|+.|.
T Consensus        19 ~~L~~L~l~~n~l~--~i~~-~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~   94 (176)
T 1a9n_A           19 VRDRELDLRGYKIP--VIEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRI-GEGLDQALPDLTELI   94 (176)
T ss_dssp             TSCEEEECTTSCCC--SCCC-GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEE-CSCHHHHCTTCCEEE
T ss_pred             CCceEEEeeCCCCc--hhHH-hhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCccccc-CcchhhcCCCCCEEE
Confidence            46677766543322  3444 3444 59999999999877656788999999999999987632 123457899999999


Q ss_pred             eeccCCceEEEEeCCCcceEEEeccccc-eeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEee
Q 014150          201 LMNFDGFTHLNIDAPNLQFFDIGGVFDD-VTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQS  279 (430)
Q Consensus       201 l~~c~~~~~l~i~~p~L~~L~l~~~~~~-~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~  279 (430)
                      +.++.- ..                ... ..+..+++|+.++++.+.....        ...-...+..+++|+.|+++.
T Consensus        95 L~~N~i-~~----------------~~~~~~l~~l~~L~~L~l~~N~i~~~--------~~~~~~~~~~l~~L~~Ld~~~  149 (176)
T 1a9n_A           95 LTNNSL-VE----------------LGDLDPLASLKSLTYLCILRNPVTNK--------KHYRLYVIYKVPQVRVLDFQK  149 (176)
T ss_dssp             CCSCCC-CC----------------GGGGGGGGGCTTCCEEECCSSGGGGS--------TTHHHHHHHHCTTCSEETTEE
T ss_pred             CCCCcC-Cc----------------chhhHhhhcCCCCCEEEecCCCCCCc--------HhHHHHHHHHCCccceeCCCc
Confidence            987642 11                111 1244566677766654332110        011112456777777777776


Q ss_pred             eee
Q 014150          280 YFL  282 (430)
Q Consensus       280 ~~~  282 (430)
                      +..
T Consensus       150 n~~  152 (176)
T 1a9n_A          150 VKL  152 (176)
T ss_dssp             CCH
T ss_pred             CCH
Confidence            544

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=97.73  E-value=2.2e-05  Score=68.90  Aligned_cols=129  Identities=19%  Similarity=0.100  Sum_probs=85.9

Q ss_pred             CCceEEEEEecCCCcccC-CCcccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccc
Q 014150          122 SCVKEFILEIWKGQRYKV-PSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLER  198 (430)
Q Consensus       122 ~~l~~l~l~~~~~~~~~l-p~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~  198 (430)
                      .+++.|++.....  ..+ |..+..+++|+.|+|++|.+..  +..|..+++|+.|+|+++.+..- ....+..+++|+.
T Consensus        40 ~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~~l~~L~~  116 (229)
T 3e6j_A           40 TNAQILYLHDNQI--TKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL-PSAVFDRLVHLKE  116 (229)
T ss_dssp             TTCSEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCE
T ss_pred             CCCCEEEcCCCcc--CccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCcc-ChhHhCcchhhCe
Confidence            6788888765432  223 4455678999999999998865  23467899999999999987632 2344667899999


Q ss_pred             eEeeccCCceEEEEeCCCcceEEEeccccceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEe
Q 014150          199 LTLMNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQ  278 (430)
Q Consensus       199 L~l~~c~~~~~l~i~~p~L~~L~l~~~~~~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~  278 (430)
                      |.+.++. +..+    |             ..+..+++|+.|+++.+......           ...+..+++|+.|++.
T Consensus       117 L~Ls~N~-l~~l----p-------------~~~~~l~~L~~L~L~~N~l~~~~-----------~~~~~~l~~L~~L~l~  167 (229)
T 3e6j_A          117 LFMCCNK-LTEL----P-------------RGIERLTHLTHLALDQNQLKSIP-----------HGAFDRLSSLTHAYLF  167 (229)
T ss_dssp             EECCSSC-CCSC----C-------------TTGGGCTTCSEEECCSSCCCCCC-----------TTTTTTCTTCCEEECT
T ss_pred             EeccCCc-cccc----C-------------cccccCCCCCEEECCCCcCCccC-----------HHHHhCCCCCCEEEee
Confidence            9998753 2111    0             12346677777777654322110           1235678889998888


Q ss_pred             eeee
Q 014150          279 SYFL  282 (430)
Q Consensus       279 ~~~~  282 (430)
                      ++.+
T Consensus       168 ~N~~  171 (229)
T 3e6j_A          168 GNPW  171 (229)
T ss_dssp             TSCB
T ss_pred             CCCc
Confidence            7654

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=97.68  E-value=2.6e-05  Score=66.51  Aligned_cols=36  Identities=22%  Similarity=0.236  Sum_probs=17.6

Q ss_pred             hccCCCccEEEEeeeeeehhhcccCCCCCCccccccceeEE
Q 014150          266 FVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSI  306 (430)
Q Consensus       266 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l  306 (430)
                      +.++++|+.|+|+++.+..+..+     ....+++|++|++
T Consensus        98 f~~l~~L~~L~L~~N~l~~~~~~-----~~~~l~~L~~L~L  133 (193)
T 2wfh_A           98 FDGLKSLRLLSLHGNDISVVPEG-----AFNDLSALSHLAI  133 (193)
T ss_dssp             TTTCTTCCEEECCSSCCCBCCTT-----TTTTCTTCCEEEC
T ss_pred             hCCCCCCCEEECCCCCCCeeChh-----hhhcCccccEEEe
Confidence            34556666666666554432111     1113446666666

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.64  E-value=2.4e-05  Score=66.64  Aligned_cols=65  Identities=20%  Similarity=0.200  Sum_probs=40.5

Q ss_pred             ccCCCcccccCceeEEEEeeeeecC-CC--CCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeecc
Q 014150          137 YKVPSSLFLCQNLIHLELFNCLLKP-PS--TFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNF  204 (430)
Q Consensus       137 ~~lp~~~~~~~~L~~L~L~~~~~~~-~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c  204 (430)
                      ..+|..+.  ++|+.|+++++.+.. +.  .+..+++|+.|+|+++.++.- ....+..++.|+.|.+.++
T Consensus        21 ~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N   88 (192)
T 1w8a_A           21 KEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI-EPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             SSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSC
T ss_pred             CcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCc-CHhHcCCcccCCEEECCCC
Confidence            34555443  377788888777654 22  256778888888877776532 1233556677777777764

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=97.63  E-value=5.2e-05  Score=63.49  Aligned_cols=57  Identities=19%  Similarity=0.201  Sum_probs=31.3

Q ss_pred             CceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeecc
Q 014150          147 QNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNF  204 (430)
Q Consensus       147 ~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c  204 (430)
                      ++|+.|+++++.+..  +..+..+++|+.|+|.++.+..- ....+..+++|+.|.+.++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSL-PDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSS
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEe-ChhHccCCCccCEEECCCC
Confidence            466777777666543  22345666677777666655421 1222345566666665543

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.62  E-value=1.4e-05  Score=77.70  Aligned_cols=41  Identities=22%  Similarity=0.364  Sum_probs=37.4

Q ss_pred             CCcccCCCcHHHHHHHHcCCCchhhhhhhhhhhhhHhhcCc
Q 014150           16 ELDRLSSLPAHVIDQILSQLPIRDAVRTSVLSKKWRYKWAT   56 (430)
Q Consensus        16 ~~d~is~LPdelL~~Ils~L~~~d~~r~s~vskrWr~lw~~   56 (430)
                      ..|.++.||+|++.+||+||+.+|+++++.|||+|+++...
T Consensus        11 ~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~   51 (464)
T 3v7d_B           11 KRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRK   51 (464)
T ss_dssp             CCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTT
T ss_pred             ccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcC
Confidence            56899999999999999999999999999999999976443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=97.60  E-value=4.1e-05  Score=72.20  Aligned_cols=147  Identities=22%  Similarity=0.110  Sum_probs=94.2

Q ss_pred             CCceEEEEEecCCCcccCCCccc--ccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCcccc
Q 014150          122 SCVKEFILEIWKGQRYKVPSSLF--LCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLE  197 (430)
Q Consensus       122 ~~l~~l~l~~~~~~~~~lp~~~~--~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le  197 (430)
                      ..++.|++.....  ..++...+  .+++|+.|+|++|.+..  +..|.++++|+.|+|+++.+..- ....+..+++|+
T Consensus        39 ~~l~~L~Ls~N~l--~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~  115 (361)
T 2xot_A           39 SYTALLDLSHNNL--SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL-DEFLFSDLQALE  115 (361)
T ss_dssp             TTCSEEECCSSCC--CEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCC
T ss_pred             CCCCEEECCCCCC--CccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcC-CHHHhCCCcCCC
Confidence            4566766654322  23444333  67899999999988764  34688899999999999886532 233467789999


Q ss_pred             ceEeeccCCceEEEE----eCCCcceEEEeccc-cc---eee---ccCCCceEEEEEEEeeccccccCCCCCcchHHHHh
Q 014150          198 RLTLMNFDGFTHLNI----DAPNLQFFDIGGVF-DD---VTF---ENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFF  266 (430)
Q Consensus       198 ~L~l~~c~~~~~l~i----~~p~L~~L~l~~~~-~~---~~~---~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l  266 (430)
                      .|.|.++. +..+.-    ..++|+.|.+.++. ..   ..+   ..+++|+.|+++.......           -...+
T Consensus       116 ~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-----------~~~~~  183 (361)
T 2xot_A          116 VLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL-----------PLTDL  183 (361)
T ss_dssp             EEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC-----------CHHHH
T ss_pred             EEECCCCc-ccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc-----------CHHHh
Confidence            99999764 222211    24789999887642 11   122   4689999999976432211           02334


Q ss_pred             ccCCC--ccEEEEeeeeee
Q 014150          267 VHLPH--IRRLEIQSYFLK  283 (430)
Q Consensus       267 ~~~~~--L~~L~l~~~~~~  283 (430)
                      ..+++  ++.|.|.++.+.
T Consensus       184 ~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          184 QKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             HHSCHHHHTTEECCSSCEE
T ss_pred             hhccHhhcceEEecCCCcc
Confidence            56666  478998877653

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.53  E-value=2.7e-05  Score=73.70  Aligned_cols=149  Identities=13%  Similarity=0.044  Sum_probs=89.0

Q ss_pred             CCCCcceEEeeeEEechhhH---HHHhh-cCccccceEeeccCCceEEEEeCCCcceEEEeccccceeeccCCCceEEEE
Q 014150          167 GFRNLKSLDLQHITLSQDVF---ENLIS-SSPTLERLTLMNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSI  242 (430)
Q Consensus       167 ~~~~L~~L~L~~~~~~~~~l---~~l~s-~cp~Le~L~l~~c~~~~~l~i~~p~L~~L~l~~~~~~~~~~~~p~L~~l~i  242 (430)
                      ..++|+.|+|.++.+++...   ...+. .++.|++|+|++|.-..                .........+++|+.|++
T Consensus        70 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~----------------~~~~~l~~~L~~L~~L~L  133 (372)
T 3un9_A           70 VLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDP----------------AGLRTLLPVFLRARKLGL  133 (372)
T ss_dssp             HHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCH----------------HHHHHTHHHHHTEEEEEC
T ss_pred             HHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCH----------------HHHHHHHHHHHhccHhhc
Confidence            35789999999999876543   33333 34789999998874210                000111123456777777


Q ss_pred             EEEeeccccccCCCCCcchHHHHh-ccCCCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHH
Q 014150          243 GLYVNVKNDQAMGPGNSCKLLRFF-VHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALC  321 (430)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~  321 (430)
                      +.+...+.       ....+...+ ...++|++|+|+++.+...........+ ...++|++|+++.+......+..+..
T Consensus       134 s~n~l~~~-------~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L-~~~~~L~~L~Ls~N~l~~~g~~~L~~  205 (372)
T 3un9_A          134 QLNSLGPE-------ACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL-AGNTSVTHLSLLHTGLGDEGLELLAA  205 (372)
T ss_dssp             CSSCCCHH-------HHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH-HTCSSCCEEECTTSSCHHHHHHHHHH
T ss_pred             CCCCCCHH-------HHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH-hcCCCcCEEeCCCCCCCcHHHHHHHH
Confidence            65432110       112333444 3578999999998876432111100000 13557999998665444444556777


Q ss_pred             HHhcCCCccEEEEeecCC
Q 014150          322 LLRSSPNLQELEMLARPE  339 (430)
Q Consensus       322 ll~~~p~L~~L~l~~~~~  339 (430)
                      .++.+++|+.|+|+++.-
T Consensus       206 ~L~~~~~L~~L~Ls~N~i  223 (372)
T 3un9_A          206 QLDRNRQLQELNVAYNGA  223 (372)
T ss_dssp             HGGGCSCCCEEECCSSCC
T ss_pred             HHhcCCCcCeEECCCCCC
Confidence            888899999999998754

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.49  E-value=5.8e-05  Score=75.59  Aligned_cols=105  Identities=18%  Similarity=0.146  Sum_probs=62.4

Q ss_pred             ceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEEEeCCCcceEEEecccc
Q 014150          148 NLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDIGGVFD  227 (430)
Q Consensus       148 ~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~i~~p~L~~L~l~~~~~  227 (430)
                      .|+.|+|++|.+...+.+..+++|+.|+|+++.+.  .+...+..+++|+.|.|+++. ++.+                +
T Consensus       442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~-l~~l----------------p  502 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNA-LENV----------------D  502 (567)
T ss_dssp             TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSC-CCCC----------------G
T ss_pred             CceEEEecCCCCCCCcCccccccCcEeecCccccc--ccchhhhcCCCCCEEECCCCC-CCCC----------------c
Confidence            47777777777665334667777777777777765  234456667777777777642 1110                1


Q ss_pred             ceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeee
Q 014150          228 DVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLK  283 (430)
Q Consensus       228 ~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  283 (430)
                        .+..+++|+.|+++.+......          ....+..+++|+.|+|+++.+.
T Consensus       503 --~l~~l~~L~~L~Ls~N~l~~~~----------~p~~l~~l~~L~~L~L~~N~l~  546 (567)
T 1dce_A          503 --GVANLPRLQELLLCNNRLQQSA----------AIQPLVSCPRLVLLNLQGNSLC  546 (567)
T ss_dssp             --GGTTCSSCCEEECCSSCCCSSS----------TTGGGGGCTTCCEEECTTSGGG
T ss_pred             --ccCCCCCCcEEECCCCCCCCCC----------CcHHHhcCCCCCEEEecCCcCC
Confidence              2445666776666543321110          0123567788888888777654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.47  E-value=2.4e-05  Score=78.32  Aligned_cols=125  Identities=16%  Similarity=0.125  Sum_probs=70.6

Q ss_pred             CcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEEEeCCCcceEEEeccccceeeccCCCceEEEEEEEeecc
Q 014150          170 NLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVK  249 (430)
Q Consensus       170 ~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~i~~p~L~~L~l~~~~~~~~~~~~p~L~~l~i~~~~~~~  249 (430)
                      .|+.|+|+++.++.  +.. +..+++|+.|.++++. +..                .+ ..+..+++|+.|+++.+....
T Consensus       442 ~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~-l~~----------------lp-~~~~~l~~L~~L~Ls~N~l~~  500 (567)
T 1dce_A          442 DVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNR-LRA----------------LP-PALAALRCLEVLQASDNALEN  500 (567)
T ss_dssp             TCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSSC-CCC----------------CC-GGGGGCTTCCEEECCSSCCCC
T ss_pred             CceEEEecCCCCCC--CcC-ccccccCcEeecCccc-ccc----------------cc-hhhhcCCCCCEEECCCCCCCC
Confidence            57888888887654  333 6677788888887653 111                11 134567778887776543211


Q ss_pred             ccccCCCCCcchHHHHhccCCCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCc
Q 014150          250 NDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNL  329 (430)
Q Consensus       250 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L  329 (430)
                                  +. .+..+++|+.|+|+++.+..+..   +..+. .+++|+.|+++.+..... ......++..+|+|
T Consensus       501 ------------lp-~l~~l~~L~~L~Ls~N~l~~~~~---p~~l~-~l~~L~~L~L~~N~l~~~-~~~~~~l~~~lp~L  562 (567)
T 1dce_A          501 ------------VD-GVANLPRLQELLLCNNRLQQSAA---IQPLV-SCPRLVLLNLQGNSLCQE-EGIQERLAEMLPSV  562 (567)
T ss_dssp             ------------CG-GGTTCSSCCEEECCSSCCCSSST---TGGGG-GCTTCCEEECTTSGGGGS-SSCTTHHHHHCTTC
T ss_pred             ------------Cc-ccCCCCCCcEEECCCCCCCCCCC---cHHHh-cCCCCCEEEecCCcCCCC-ccHHHHHHHHCccc
Confidence                        11 35778888888888776643210   11111 456777777743211110 00123455668888


Q ss_pred             cEEE
Q 014150          330 QELE  333 (430)
Q Consensus       330 ~~L~  333 (430)
                      +.|.
T Consensus       563 ~~L~  566 (567)
T 1dce_A          563 SSIL  566 (567)
T ss_dssp             SEEE
T ss_pred             CccC
Confidence            8875

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=97.44  E-value=5.1e-05  Score=71.23  Aligned_cols=59  Identities=19%  Similarity=0.072  Sum_probs=35.6

Q ss_pred             HhccCCCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEee
Q 014150          265 FFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLA  336 (430)
Q Consensus       265 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~  336 (430)
                      .+.++++|+.|+++++.+..+..        ..|.+|++|.+.....    +..++ -+..+++|+.+++..
T Consensus       197 ~f~~l~~L~~LdLs~N~l~~lp~--------~~~~~L~~L~~l~~~~----l~~lP-~l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          197 VFHGASGPVILDISRTRIHSLPS--------YGLENLKKLRARSTYN----LKKLP-TLEKLVALMEASLTY  255 (350)
T ss_dssp             TTTTEECCSEEECTTSCCCCCCS--------SSCTTCCEEECTTCTT----CCCCC-CTTTCCSCCEEECSC
T ss_pred             HhccCcccchhhcCCCCcCccCh--------hhhccchHhhhccCCC----cCcCC-CchhCcChhhCcCCC
Confidence            35778899999998887653221        1366777777622111    11222 256678888888754

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=97.40  E-value=0.00012  Score=62.28  Aligned_cols=65  Identities=22%  Similarity=0.204  Sum_probs=30.6

Q ss_pred             cCCCcccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeec
Q 014150          138 KVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMN  203 (430)
Q Consensus       138 ~lp~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~  203 (430)
                      .+|..+..+++|+.|+|++|.+..  +..|.++++|++|+|+++.+..-. ...+..+++|+.|.|.+
T Consensus        45 ~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~-~~~f~~l~~L~~L~L~~  111 (193)
T 2wfh_A           45 LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP-PRTFDGLKSLRLLSLHG  111 (193)
T ss_dssp             SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC-TTTTTTCTTCCEEECCS
T ss_pred             hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeC-HHHhCCCCCCCEEECCC
Confidence            344444445555555555555443  223455555555555555543211 11233445555555554

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.39  E-value=7.6e-05  Score=72.18  Aligned_cols=38  Identities=26%  Similarity=0.384  Sum_probs=35.7

Q ss_pred             CCcccCCCcHHHHHHHHcCCCchhhhhhhhhhhhhHhh
Q 014150           16 ELDRLSSLPAHVIDQILSQLPIRDAVRTSVLSKKWRYK   53 (430)
Q Consensus        16 ~~d~is~LPdelL~~Ils~L~~~d~~r~s~vskrWr~l   53 (430)
                      ..|.++.||+|++.+||+||+.+|+++++.|||+|+.+
T Consensus        15 ~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~   52 (445)
T 2ovr_B           15 QRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL   52 (445)
T ss_dssp             CCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred             cCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhh
Confidence            56889999999999999999999999999999999873

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.37  E-value=4.5e-05  Score=73.67  Aligned_cols=37  Identities=27%  Similarity=0.529  Sum_probs=35.1

Q ss_pred             CCcccCCCcHH----HHHHHHcCCCchhhhhhhhhhhhhHh
Q 014150           16 ELDRLSSLPAH----VIDQILSQLPIRDAVRTSVLSKKWRY   52 (430)
Q Consensus        16 ~~d~is~LPde----lL~~Ils~L~~~d~~r~s~vskrWr~   52 (430)
                      ..|.++.||+|    |+.+||+||+.+++++++.|||+|++
T Consensus         7 ~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~   47 (435)
T 1p22_A            7 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYR   47 (435)
T ss_dssp             CCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHH
T ss_pred             hcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            46899999999    99999999999999999999999995

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.27  E-value=0.00012  Score=61.82  Aligned_cols=39  Identities=13%  Similarity=0.047  Sum_probs=25.5

Q ss_pred             ccceeEE--EEeeCChhhHHHHHHHHhcCCCccEEEEeecC
Q 014150          300 DLNYLSI--RINFNDLEENLAALCLLRSSPNLQELEMLARP  338 (430)
Q Consensus       300 ~L~~L~l--~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~  338 (430)
                      +|++|++  ..+..+......+...++.+++|++|+|+++.
T Consensus       122 ~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          122 SLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             SCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             CceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence            4666666  33433444455677778888888888887754

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=97.24  E-value=0.00032  Score=70.09  Aligned_cols=181  Identities=12%  Similarity=0.009  Sum_probs=108.0

Q ss_pred             ceeEEEEEeccCCCcchHHHHHHHHHhCCceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecCCCCCCCCCCcceE
Q 014150           95 PILKFKLSHRDLLGVSDIDRWILYMSRSCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSL  174 (430)
Q Consensus        95 ~l~~l~l~~~~~~~~~~v~~wl~~~~~~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L  174 (430)
                      .++.+.+......+   +...    ...+++.|++..+...  .+|   ..+++|+.|+|++|.+..-+.+..  +|+.|
T Consensus        60 ~L~~L~Ls~n~L~~---lp~~----l~~~L~~L~Ls~N~l~--~ip---~~l~~L~~L~Ls~N~l~~ip~l~~--~L~~L  125 (571)
T 3cvr_A           60 QFSELQLNRLNLSS---LPDN----LPPQITVLEITQNALI--SLP---ELPASLEYLDACDNRLSTLPELPA--SLKHL  125 (571)
T ss_dssp             TCSEEECCSSCCSC---CCSC----CCTTCSEEECCSSCCS--CCC---CCCTTCCEEECCSSCCSCCCCCCT--TCCEE
T ss_pred             CccEEEeCCCCCCc---cCHh----HcCCCCEEECcCCCCc--ccc---cccCCCCEEEccCCCCCCcchhhc--CCCEE
Confidence            47777777654322   1111    1257888888654332  566   346899999999998876333433  99999


Q ss_pred             EeeeEEechhhHHHHhhcCccccceEeeccCCceEEEEeCCCcceEEEecccc-cee-eccCCCceEEEEEEEeeccccc
Q 014150          175 DLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDIGGVFD-DVT-FENTFHLALVSIGLYVNVKNDQ  252 (430)
Q Consensus       175 ~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~i~~p~L~~L~l~~~~~-~~~-~~~~p~L~~l~i~~~~~~~~~~  252 (430)
                      +|+++.++.  +..   .+++|+.|.+.++.- ..+.-..++|+.|.+.++.- .+. +.  ++|+.|+++.+...... 
T Consensus       126 ~Ls~N~l~~--lp~---~l~~L~~L~Ls~N~l-~~lp~~l~~L~~L~Ls~N~L~~lp~l~--~~L~~L~Ls~N~L~~lp-  196 (571)
T 3cvr_A          126 DVDNNQLTM--LPE---LPALLEYINADNNQL-TMLPELPTSLEVLSVRNNQLTFLPELP--ESLEALDVSTNLLESLP-  196 (571)
T ss_dssp             ECCSSCCSC--CCC---CCTTCCEEECCSSCC-SCCCCCCTTCCEEECCSSCCSCCCCCC--TTCCEEECCSSCCSSCC-
T ss_pred             ECCCCcCCC--CCC---cCccccEEeCCCCcc-CcCCCcCCCcCEEECCCCCCCCcchhh--CCCCEEECcCCCCCchh-
Confidence            999998764  222   689999999998642 22222457999999987421 111 22  78999988765432110 


Q ss_pred             cCCCCCcchHHHHhccCCCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeC
Q 014150          253 AMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFN  311 (430)
Q Consensus       253 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  311 (430)
                           ...  ..+....+.|+.|+|+++.+..+.     ..+. .+++|+.|+++.+..
T Consensus       197 -----~~~--~~L~~~~~~L~~L~Ls~N~l~~lp-----~~l~-~l~~L~~L~L~~N~l  242 (571)
T 3cvr_A          197 -----AVP--VRNHHSEETEIFFRCRENRITHIP-----ENIL-SLDPTCTIILEDNPL  242 (571)
T ss_dssp             -----CCC----------CCEEEECCSSCCCCCC-----GGGG-GSCTTEEEECCSSSC
T ss_pred             -----hHH--HhhhcccccceEEecCCCcceecC-----HHHh-cCCCCCEEEeeCCcC
Confidence                 000  022233344599999988765321     1122 366888888855433

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.20  E-value=0.00027  Score=60.01  Aligned_cols=80  Identities=20%  Similarity=0.250  Sum_probs=58.4

Q ss_pred             CceEEEEEecCCCcccCCC--cccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccc
Q 014150          123 CVKEFILEIWKGQRYKVPS--SLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLER  198 (430)
Q Consensus       123 ~l~~l~l~~~~~~~~~lp~--~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~  198 (430)
                      .+++|.+.....  ..++.  .+..+++|++|+|++|.+..  +..|.++++|+.|+|+++.+..-. ...+...++|+.
T Consensus        30 ~l~~L~l~~n~i--~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~  106 (192)
T 1w8a_A           30 HTTELLLNDNEL--GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEIS-NKMFLGLHQLKT  106 (192)
T ss_dssp             TCSEEECCSCCC--CSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEEC-SSSSTTCTTCCE
T ss_pred             CCCEEECCCCcC--CccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccC-HHHhcCCCCCCE
Confidence            677777654432  23443  35678999999999998875  457889999999999999876431 233566888888


Q ss_pred             eEeeccC
Q 014150          199 LTLMNFD  205 (430)
Q Consensus       199 L~l~~c~  205 (430)
                      |++.++.
T Consensus       107 L~L~~N~  113 (192)
T 1w8a_A          107 LNLYDNQ  113 (192)
T ss_dssp             EECCSSC
T ss_pred             EECCCCc
Confidence            8888753

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.01  E-value=0.00064  Score=56.39  Aligned_cols=65  Identities=22%  Similarity=0.306  Sum_probs=47.5

Q ss_pred             ccCCCcccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeecc
Q 014150          137 YKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNF  204 (430)
Q Consensus       137 ~~lp~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c  204 (430)
                      ..+|..+.  ++|+.|+|++|.+..  +..|.++++|+.|+|+++.+..- ....+..+++|+.|.|.+.
T Consensus        22 ~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           22 ASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL-PAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSS
T ss_pred             CccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCcc-ChhhccCCCCCCEEECCCC
Confidence            45665543  788999999988765  44577899999999999887632 2334567888888888865

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=96.96  E-value=0.00075  Score=56.24  Aligned_cols=65  Identities=22%  Similarity=0.237  Sum_probs=46.1

Q ss_pred             ccCCCcccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeecc
Q 014150          137 YKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNF  204 (430)
Q Consensus       137 ~~lp~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c  204 (430)
                      ..+|..+.  ++|+.|+|++|.+..  +..|.++++|+.|+|+++.+..- ...++..+++|+.|+|.+.
T Consensus        25 ~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           25 ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAI-PTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSS
T ss_pred             CccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCcc-ChhHhCCcchhhEEECCCC
Confidence            45666543  788899999888765  34577888999999988876532 1233566788888888764

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=96.94  E-value=0.00032  Score=65.02  Aligned_cols=169  Identities=18%  Similarity=0.228  Sum_probs=89.4

Q ss_pred             cCceeEEEEeeeeec--CCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEee-----------------ccCC
Q 014150          146 CQNLIHLELFNCLLK--PPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLM-----------------NFDG  206 (430)
Q Consensus       146 ~~~L~~L~L~~~~~~--~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~-----------------~c~~  206 (430)
                      |++|+.|.|.. .+.  ...+|.+|++|+.|+|..+.+..- -...+..|..+..+.+.                 +|..
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i-~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~  177 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNL-LPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP  177 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEE-CTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcccc-chhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence            78888888876 332  346688888888888877643210 01223445555555432                 2322


Q ss_pred             ce-EEEE---------------eCCCcceEEEeccccceee----ccCCCceEEEEEEEeeccccccCCCCCcchHHHHh
Q 014150          207 FT-HLNI---------------DAPNLQFFDIGGVFDDVTF----ENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFF  266 (430)
Q Consensus       207 ~~-~l~i---------------~~p~L~~L~l~~~~~~~~~----~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l  266 (430)
                      +. .+.+               ...++..+.+.+......+    ..+++|+.+++.........           ...+
T Consensus       178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~-----------~~aF  246 (329)
T 3sb4_A          178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIP-----------DFTF  246 (329)
T ss_dssp             CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEEC-----------TTTT
T ss_pred             cceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceec-----------Hhhh
Confidence            22 1111               1234445555443221111    23788998888643211110           1236


Q ss_pred             ccCCCccEEEEeeeeeehhhcccCCCCCCccccccc-eeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecC
Q 014150          267 VHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLN-YLSIRINFNDLEENLAALCLLRSSPNLQELEMLARP  338 (430)
Q Consensus       267 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~  338 (430)
                      .++++|+.+.+..+ +..+..     ..-..+.+|+ .+.+........     ...+..|++|+.+++..+.
T Consensus       247 ~~~~~L~~l~l~~n-i~~I~~-----~aF~~~~~L~~~l~l~~~l~~I~-----~~aF~~c~~L~~l~l~~n~  308 (329)
T 3sb4_A          247 AQKKYLLKIKLPHN-LKTIGQ-----RVFSNCGRLAGTLELPASVTAIE-----FGAFMGCDNLRYVLATGDK  308 (329)
T ss_dssp             TTCTTCCEEECCTT-CCEECT-----TTTTTCTTCCEEEEECTTCCEEC-----TTTTTTCTTEEEEEECSSC
T ss_pred             hCCCCCCEEECCcc-cceehH-----HHhhCChhccEEEEEcccceEEc-----hhhhhCCccCCEEEeCCCc
Confidence            88999999999875 322111     1111455677 777732111100     1347889999999986654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=96.90  E-value=0.00019  Score=61.25  Aligned_cols=98  Identities=19%  Similarity=0.061  Sum_probs=68.4

Q ss_pred             hCCceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecC-CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccce
Q 014150          121 RSCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERL  199 (430)
Q Consensus       121 ~~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L  199 (430)
                      -..++.|++..+..  ..+| .+..+++|+.|++++|.+.. +..+..+++|+.|+|+++.+.+  +. -+..+++|+.|
T Consensus        47 l~~L~~L~ls~n~l--~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~--l~-~~~~l~~L~~L  120 (198)
T 1ds9_A           47 LKACKHLALSTNNI--EKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS--LS-GIEKLVNLRVL  120 (198)
T ss_dssp             TTTCSEEECSEEEE--SCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCC--HH-HHHHHHHSSEE
T ss_pred             CCCCCEEECCCCCC--cccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCc--CC-ccccCCCCCEE
Confidence            46888888854432  2356 66778999999999998875 2233456899999999998765  23 36678999999


Q ss_pred             EeeccCCceEEE-----EeCCCcceEEEecc
Q 014150          200 TLMNFDGFTHLN-----IDAPNLQFFDIGGV  225 (430)
Q Consensus       200 ~l~~c~~~~~l~-----i~~p~L~~L~l~~~  225 (430)
                      ++.++.-. .+.     -..++|+.|.+.++
T Consensus       121 ~l~~N~i~-~~~~~~~l~~l~~L~~L~l~~N  150 (198)
T 1ds9_A          121 YMSNNKIT-NWGEIDKLAALDKLEDLLLAGN  150 (198)
T ss_dssp             EESEEECC-CHHHHHHHTTTTTCSEEEECSC
T ss_pred             ECCCCcCC-chhHHHHHhcCCCCCEEEecCC
Confidence            99876321 111     13578999998874

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=96.85  E-value=0.00019  Score=74.10  Aligned_cols=102  Identities=20%  Similarity=0.144  Sum_probs=54.9

Q ss_pred             CCcccccCceeEEEEeeeeecC-CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEE---EeCC
Q 014150          140 PSSLFLCQNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLN---IDAP  215 (430)
Q Consensus       140 p~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~---i~~p  215 (430)
                      +..+..++.|+.|+|++|.+.. +..+..+++|+.|+|+++.++  .+..-+..+++|+.|+|+++. +..+.   -..+
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~  293 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCF  293 (727)
T ss_dssp             -----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGT
T ss_pred             hhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCc-CCccChhhcCCC
Confidence            3344556778888888776654 334447778888888877765  234445677778888877654 21110   0123


Q ss_pred             CcceEEEeccc-c--ceeeccCCCceEEEEEE
Q 014150          216 NLQFFDIGGVF-D--DVTFENTFHLALVSIGL  244 (430)
Q Consensus       216 ~L~~L~l~~~~-~--~~~~~~~p~L~~l~i~~  244 (430)
                      +|+.|.+.++. .  ...+.++++|+.|+++.
T Consensus       294 ~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~  325 (727)
T 4b8c_D          294 QLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEG  325 (727)
T ss_dssp             TCSEEECCSSCCCCCCSSTTSCTTCCCEECTT
T ss_pred             CCCEEECCCCCCCccChhhhcCCCccEEeCCC
Confidence            45555554321 1  11244555566555543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=96.71  E-value=0.0016  Score=54.12  Aligned_cols=81  Identities=20%  Similarity=0.164  Sum_probs=58.4

Q ss_pred             CCceEEEEEecCCCcccCCCc-ccccCceeEEEEeeeeecCC--CCCCCCCCcceEEeeeEEechhhHHHHhhcCccccc
Q 014150          122 SCVKEFILEIWKGQRYKVPSS-LFLCQNLIHLELFNCLLKPP--STFKGFRNLKSLDLQHITLSQDVFENLISSSPTLER  198 (430)
Q Consensus       122 ~~l~~l~l~~~~~~~~~lp~~-~~~~~~L~~L~L~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~  198 (430)
                      .+++++++.....  ..+|.. +..+++|++|++++|.+...  ..+..+++|+.|+|.++.++.- ....+..+++|+.
T Consensus        28 ~~l~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~  104 (177)
T 2o6r_A           28 SSATRLELESNKL--QSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSL-PNGVFDKLTQLKE  104 (177)
T ss_dssp             TTCSEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCE
T ss_pred             CCCcEEEeCCCcc--cEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCcccc-CHHHhhCCcccCE
Confidence            5677777764432  245544 35679999999999988652  3467899999999999987632 2334567889999


Q ss_pred             eEeeccC
Q 014150          199 LTLMNFD  205 (430)
Q Consensus       199 L~l~~c~  205 (430)
                      |.+.++.
T Consensus       105 L~l~~N~  111 (177)
T 2o6r_A          105 LALDTNQ  111 (177)
T ss_dssp             EECCSSC
T ss_pred             EECcCCc
Confidence            9988753

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=96.69  E-value=0.0012  Score=61.22  Aligned_cols=99  Identities=18%  Similarity=0.160  Sum_probs=51.5

Q ss_pred             CCCcceEEEecc-c---cceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCcc-EEEEeeeeeehhhcc
Q 014150          214 APNLQFFDIGGV-F---DDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIR-RLEIQSYFLKYLAIG  288 (430)
Q Consensus       214 ~p~L~~L~l~~~-~---~~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~  288 (430)
                      +++|+.+++.+. .   +...|.++++|+++++...  ....      .    ...+.++++|+ .+.+... +..+.. 
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I------~----~~aF~~~~~L~~~l~l~~~-l~~I~~-  290 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTI------G----QRVFSNCGRLAGTLELPAS-VTAIEF-  290 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEE------C----TTTTTTCTTCCEEEEECTT-CCEECT-
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--ccee------h----HHHhhCChhccEEEEEccc-ceEEch-
Confidence            456666666542 2   2334677888888877532  1000      0    12367888888 8888762 221111 


Q ss_pred             cCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEE
Q 014150          289 NVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEM  334 (430)
Q Consensus       289 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l  334 (430)
                          ..-..+++|+.+.+......  .+  -...+.+|++|++++.
T Consensus       291 ----~aF~~c~~L~~l~l~~n~i~--~I--~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          291 ----GAFMGCDNLRYVLATGDKIT--TL--GDELFGNGVPSKLIYK  328 (329)
T ss_dssp             ----TTTTTCTTEEEEEECSSCCC--EE--CTTTTCTTCCCCEEEC
T ss_pred             ----hhhhCCccCCEEEeCCCccC--cc--chhhhcCCcchhhhcc
Confidence                11114567777776211110  00  0124678888888753

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=96.50  E-value=0.0018  Score=53.89  Aligned_cols=80  Identities=21%  Similarity=0.189  Sum_probs=58.4

Q ss_pred             CCceEEEEEecCCCcccC-CCcccccCceeEEEEeeeeecC-C-CCCCCCCCcceEEeeeEEechhhHHHHhhcCccccc
Q 014150          122 SCVKEFILEIWKGQRYKV-PSSLFLCQNLIHLELFNCLLKP-P-STFKGFRNLKSLDLQHITLSQDVFENLISSSPTLER  198 (430)
Q Consensus       122 ~~l~~l~l~~~~~~~~~l-p~~~~~~~~L~~L~L~~~~~~~-~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~  198 (430)
                      .+++.|++.....  ..+ |..+..+++|+.|+|++|.+.. + ..|.++++|+.|+|+++.+..- ....+..+++|+.
T Consensus        33 ~~L~~L~Ls~N~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l-~~~~~~~l~~L~~  109 (174)
T 2r9u_A           33 TDKQRLWLNNNQI--TKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSI-PRGAFDNLKSLTH  109 (174)
T ss_dssp             TTCSEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCSE
T ss_pred             CCCcEEEeCCCCc--cccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcccee-CHHHhccccCCCE
Confidence            5778877754432  334 4455678999999999998876 3 3467899999999999987632 1234667889999


Q ss_pred             eEeecc
Q 014150          199 LTLMNF  204 (430)
Q Consensus       199 L~l~~c  204 (430)
                      |.+.+.
T Consensus       110 L~L~~N  115 (174)
T 2r9u_A          110 IYLYNN  115 (174)
T ss_dssp             EECCSS
T ss_pred             EEeCCC
Confidence            998864

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=96.35  E-value=0.003  Score=52.24  Aligned_cols=80  Identities=20%  Similarity=0.168  Sum_probs=57.2

Q ss_pred             CCceEEEEEecCCCcccC-CCcccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccc
Q 014150          122 SCVKEFILEIWKGQRYKV-PSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLER  198 (430)
Q Consensus       122 ~~l~~l~l~~~~~~~~~l-p~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~  198 (430)
                      ..++.|++.....  ..+ |..+..+++|+.|+|++|.+..  +..|..+++|+.|+|+++.+..- ....+..+++|+.
T Consensus        30 ~~l~~L~L~~N~i--~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~  106 (170)
T 3g39_A           30 TTTQVLYLYDNQI--TKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSI-PRGAFDNLKSLTH  106 (170)
T ss_dssp             TTCSEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCE
T ss_pred             CCCcEEEcCCCcC--CccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEe-CHHHhcCCCCCCE
Confidence            5677777654322  234 4445678999999999998875  33467899999999999987632 1234667888998


Q ss_pred             eEeecc
Q 014150          199 LTLMNF  204 (430)
Q Consensus       199 L~l~~c  204 (430)
                      |.|.+.
T Consensus       107 L~L~~N  112 (170)
T 3g39_A          107 IWLLNN  112 (170)
T ss_dssp             EECCSS
T ss_pred             EEeCCC
Confidence            888864

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=96.32  E-value=0.0049  Score=58.70  Aligned_cols=33  Identities=18%  Similarity=0.102  Sum_probs=18.2

Q ss_pred             CceeEEEEeee-eecCCCCCCCCCCcceEEeeeE
Q 014150          147 QNLIHLELFNC-LLKPPSTFKGFRNLKSLDLQHI  179 (430)
Q Consensus       147 ~~L~~L~L~~~-~~~~~~~~~~~~~L~~L~L~~~  179 (430)
                      .+|+.+.+... ......+|.+|++|+.++|..+
T Consensus       157 ~~L~~i~lp~~l~~I~~~aF~~c~~L~~l~l~~n  190 (401)
T 4fdw_A          157 STVQEIVFPSTLEQLKEDIFYYCYNLKKADLSKT  190 (401)
T ss_dssp             CCCCEEECCTTCCEECSSTTTTCTTCCEEECTTS
T ss_pred             CCceEEEeCCCccEehHHHhhCcccCCeeecCCC
Confidence            35666666542 1122345666777777777543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=96.23  E-value=0.0017  Score=54.68  Aligned_cols=134  Identities=11%  Similarity=-0.020  Sum_probs=78.1

Q ss_pred             chHHHHhccCCCccEEEEeee-eeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecC
Q 014150          260 CKLLRFFVHLPHIRRLEIQSY-FLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARP  338 (430)
Q Consensus       260 ~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~  338 (430)
                      ..+..++...++|++|+|+.+ .+...........+. ..++|++|+++.+..+...+..+...++..++|++|+|+.+.
T Consensus        26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~-~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~  104 (185)
T 1io0_A           26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALK-TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF  104 (185)
T ss_dssp             HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHT-TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred             HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHH-hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence            345667788888999998876 543211100000011 245788888866655555566677788888999999998875


Q ss_pred             CCCcccccccceecccccccccCceEEEE--EeeecCccHHHHHHHHHccCCCcceEEEeecC
Q 014150          339 EETGIGVLTNFWEVDHWTSLFSQLRMVKI--VGISGIRSELEFIKFVLSNSPVLETMTIKPAS  399 (430)
Q Consensus       339 ~~~~~~~~~~~w~~~~~~~~~~~L~~v~i--~~~~~~~~e~~~~~~il~~~~~L~~l~i~~~~  399 (430)
                      -...+..   ....  .-...++|+++.+  .+-.-.......+...++..+.|+++.+..+.
T Consensus       105 i~~~g~~---~l~~--~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          105 ISGSGIL---ALVE--ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             CCHHHHH---HHHH--GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             CCHHHHH---HHHH--HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence            4310000   0000  0012357888888  43322233333334456677899999998776

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=95.89  E-value=0.0011  Score=68.40  Aligned_cols=79  Identities=22%  Similarity=0.291  Sum_probs=43.0

Q ss_pred             CCceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecC-CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceE
Q 014150          122 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLT  200 (430)
Q Consensus       122 ~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~  200 (430)
                      ..++.|++....  ...+|..++.+++|++|+|++|.+.. |..+.++++|+.|+|+++.++  .+..-+..+++|+.|.
T Consensus       224 ~~L~~L~Ls~n~--l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~  299 (727)
T 4b8c_D          224 QLWHALDLSNLQ--IFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT--SLPAELGSCFQLKYFY  299 (727)
T ss_dssp             CCCCEEECTTSC--CSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS--SCCSSGGGGTTCSEEE
T ss_pred             CCCcEEECCCCC--CCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC--ccChhhcCCCCCCEEE
Confidence            345555443222  22455555566666666666665543 334556666666666666654  2333345566666666


Q ss_pred             eecc
Q 014150          201 LMNF  204 (430)
Q Consensus       201 l~~c  204 (430)
                      |.++
T Consensus       300 L~~N  303 (727)
T 4b8c_D          300 FFDN  303 (727)
T ss_dssp             CCSS
T ss_pred             CCCC
Confidence            6654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=95.44  E-value=0.0065  Score=56.48  Aligned_cols=66  Identities=23%  Similarity=0.214  Sum_probs=42.1

Q ss_pred             ccCCCcccccCceeEEEEee-eeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeecc
Q 014150          137 YKVPSSLFLCQNLIHLELFN-CLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNF  204 (430)
Q Consensus       137 ~~lp~~~~~~~~L~~L~L~~-~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c  204 (430)
                      ..+|. +..+++|+.|+|++ |.+..  +..|.++++|+.|+|+++.+..- ....+..+++|+.|+|++.
T Consensus        22 ~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           22 DSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV-APDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             TTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEE-CTTGGGSCSCCCEEECCSS
T ss_pred             CccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCcccee-CHHHhcCCcCCCEEeCCCC
Confidence            34666 66667777777775 66543  23466777777777777765432 1334566777777777764

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=95.32  E-value=0.0033  Score=56.03  Aligned_cols=80  Identities=21%  Similarity=0.152  Sum_probs=49.5

Q ss_pred             CCceEEEEEecCCCcc-cCCCcccccCceeEEEEeeeeecCCCCCCCCC--CcceEEeeeEEech------hhHHHHhhc
Q 014150          122 SCVKEFILEIWKGQRY-KVPSSLFLCQNLIHLELFNCLLKPPSTFKGFR--NLKSLDLQHITLSQ------DVFENLISS  192 (430)
Q Consensus       122 ~~l~~l~l~~~~~~~~-~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~--~L~~L~L~~~~~~~------~~l~~l~s~  192 (430)
                      +.++.|.+........ .+|..+..+++|+.|+|++|.+.....+..+.  +|++|+|.++.+.+      .-...++..
T Consensus       170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~  249 (267)
T 3rw6_A          170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRER  249 (267)
T ss_dssp             TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHH
T ss_pred             CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHH
Confidence            4677777654332222 34455556788888888888776543333344  78888888877653      122456777


Q ss_pred             CccccceEe
Q 014150          193 SPTLERLTL  201 (430)
Q Consensus       193 cp~Le~L~l  201 (430)
                      +|+|+.|+=
T Consensus       250 ~P~L~~LDg  258 (267)
T 3rw6_A          250 FPKLLRLDG  258 (267)
T ss_dssp             CTTCCEESS
T ss_pred             CcccCeECC
Confidence            888877753

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=95.18  E-value=0.011  Score=56.17  Aligned_cols=89  Identities=12%  Similarity=0.113  Sum_probs=42.3

Q ss_pred             ceeEEEEeee-eecCCCCCCCCCCcceEEeeeE--EechhhHHHHhhcCccccceEeeccCCceEEE---EeCCCcceEE
Q 014150          148 NLIHLELFNC-LLKPPSTFKGFRNLKSLDLQHI--TLSQDVFENLISSSPTLERLTLMNFDGFTHLN---IDAPNLQFFD  221 (430)
Q Consensus       148 ~L~~L~L~~~-~~~~~~~~~~~~~L~~L~L~~~--~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~---i~~p~L~~L~  221 (430)
                      +|+.+.+..+ .-....+|.++ +|+.+.|...  .+..    ..+.+|++|+.+.+.... +..+.   +...+|+.+.
T Consensus       136 ~L~~i~l~~~i~~I~~~aF~~~-~L~~i~lp~~l~~I~~----~aF~~c~~L~~l~l~~n~-l~~I~~~aF~~~~L~~l~  209 (401)
T 4fdw_A          136 QIAKVVLNEGLKSIGDMAFFNS-TVQEIVFPSTLEQLKE----DIFYYCYNLKKADLSKTK-ITKLPASTFVYAGIEEVL  209 (401)
T ss_dssp             CCSEEECCTTCCEECTTTTTTC-CCCEEECCTTCCEECS----STTTTCTTCCEEECTTSC-CSEECTTTTTTCCCSEEE
T ss_pred             CccEEEeCCCccEECHHhcCCC-CceEEEeCCCccEehH----HHhhCcccCCeeecCCCc-ceEechhhEeecccCEEE
Confidence            5777776543 11223455553 5777776541  1222    235567777777775321 11111   1124555555


Q ss_pred             Eecccc---ceeeccCCCceEEEE
Q 014150          222 IGGVFD---DVTFENTFHLALVSI  242 (430)
Q Consensus       222 l~~~~~---~~~~~~~p~L~~l~i  242 (430)
                      +.....   ...|.++++|+.+.+
T Consensus       210 lp~~l~~I~~~aF~~~~~L~~l~l  233 (401)
T 4fdw_A          210 LPVTLKEIGSQAFLKTSQLKTIEI  233 (401)
T ss_dssp             CCTTCCEECTTTTTTCTTCCCEEC
T ss_pred             eCCchheehhhHhhCCCCCCEEec
Confidence            543221   223445666666555

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=94.11  E-value=0.016  Score=53.74  Aligned_cols=78  Identities=19%  Similarity=0.160  Sum_probs=48.5

Q ss_pred             CCceEEEEEe-cCCCcccCCC-cccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCcccc
Q 014150          122 SCVKEFILEI-WKGQRYKVPS-SLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLE  197 (430)
Q Consensus       122 ~~l~~l~l~~-~~~~~~~lp~-~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le  197 (430)
                      .+++.|+|.. ..  ...+|. .+..+++|+.|+|++|.+..  +..|.++++|+.|+|+++.+..-. ..++...+ |+
T Consensus        31 ~~L~~L~l~~~n~--l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~~~-L~  106 (347)
T 2ifg_A           31 ENLTELYIENQQH--LQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLS-WKTVQGLS-LQ  106 (347)
T ss_dssp             SCCSEEECCSCSS--CCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCC-STTTCSCC-CC
T ss_pred             CCeeEEEccCCCC--CCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeC-HHHcccCC-ce
Confidence            3567776642 22  123443 35567888888888887654  345678888888888888765321 12233333 88


Q ss_pred             ceEeec
Q 014150          198 RLTLMN  203 (430)
Q Consensus       198 ~L~l~~  203 (430)
                      .|.|.+
T Consensus       107 ~l~l~~  112 (347)
T 2ifg_A          107 ELVLSG  112 (347)
T ss_dssp             EEECCS
T ss_pred             EEEeeC
Confidence            888775

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=93.71  E-value=0.077  Score=50.14  Aligned_cols=29  Identities=21%  Similarity=0.216  Sum_probs=14.3

Q ss_pred             CCcceEEEeccc---cceeeccCCCceEEEEE
Q 014150          215 PNLQFFDIGGVF---DDVTFENTFHLALVSIG  243 (430)
Q Consensus       215 p~L~~L~l~~~~---~~~~~~~~p~L~~l~i~  243 (430)
                      .+|+.+.+....   ....+.++..|+.+.+.
T Consensus       230 ~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~  261 (394)
T 4fs7_A          230 TGVKNIIIPDSFTELGKSVFYGCTDLESISIQ  261 (394)
T ss_dssp             CCCCEEEECTTCCEECSSTTTTCSSCCEEEEC
T ss_pred             CCCceEEECCCceecccccccccccceeEEcC
Confidence            355555554322   12234456667666653

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=92.77  E-value=0.033  Score=49.55  Aligned_cols=59  Identities=27%  Similarity=0.235  Sum_probs=36.7

Q ss_pred             ccCceeEEEEeeeeecCCCC----CCCCCCcceEEeeeEEechh-hHHHHhhcCccccceEeeccC
Q 014150          145 LCQNLIHLELFNCLLKPPST----FKGFRNLKSLDLQHITLSQD-VFENLISSSPTLERLTLMNFD  205 (430)
Q Consensus       145 ~~~~L~~L~L~~~~~~~~~~----~~~~~~L~~L~L~~~~~~~~-~l~~l~s~cp~Le~L~l~~c~  205 (430)
                      .+++|++|+|++|.+....+    +..+|+|+.|+|+++.+.+- .+.. +... .|++|.+.+.+
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~-l~~l-~L~~L~L~~Np  231 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK-IKGL-KLEELWLDGNS  231 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGG-GTTS-CCSEEECTTST
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhh-cccC-CcceEEccCCc
Confidence            35778888888887765222    23678888888888877543 3332 2223 66666666543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=86.84  E-value=1.1  Score=42.06  Aligned_cols=118  Identities=18%  Similarity=0.203  Sum_probs=58.2

Q ss_pred             CCCCCCCCcceEEeeeEE--echhhHHHHhhcCccccceEeeccCCceEEEE----eCCCcceEEEeccc---cceeecc
Q 014150          163 STFKGFRNLKSLDLQHIT--LSQDVFENLISSSPTLERLTLMNFDGFTHLNI----DAPNLQFFDIGGVF---DDVTFEN  233 (430)
Q Consensus       163 ~~~~~~~~L~~L~L~~~~--~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~i----~~p~L~~L~l~~~~---~~~~~~~  233 (430)
                      .+|.+|.+|+.+.+....  +..    ..+..|+.|+++.+..  .+..+.-    .+.+|+.+.+-...   +...|.+
T Consensus       259 ~aF~~c~~L~~i~lp~~~~~I~~----~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~  332 (394)
T 4gt6_A          259 HAFDSCAYLASVKMPDSVVSIGT----GAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPEGITQILDDAFAG  332 (394)
T ss_dssp             TTTTTCSSCCEEECCTTCCEECT----TTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTT
T ss_pred             ceeeecccccEEecccccceecC----cccccccccccccCCC--cccccCceeecCCCCcCEEEeCCcccEehHhHhhC
Confidence            456666777776664321  221    2244566776666642  1221111    13455555553322   2335678


Q ss_pred             CCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeehhhcccCCCCCCccccccceeEE
Q 014150          234 TFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSI  306 (430)
Q Consensus       234 ~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l  306 (430)
                      |.+|+.+.+...  ...     + .    ...+.+|++|+.+++.++....-.+        ..+.+|+.+.+
T Consensus       333 C~~L~~i~ip~s--v~~-----I-~----~~aF~~C~~L~~i~~~~~~~~~~~~--------~~~~~L~~i~i  385 (394)
T 4gt6_A          333 CEQLERIAIPSS--VTK-----I-P----ESAFSNCTALNNIEYSGSRSQWNAI--------STDSGLQNLPV  385 (394)
T ss_dssp             CTTCCEEEECTT--CCB-----C-C----GGGGTTCTTCCEEEESSCHHHHHTC--------BCCCCC-----
T ss_pred             CCCCCEEEECcc--cCE-----E-h----HhHhhCCCCCCEEEECCceeehhhh--------hccCCCCEEEe
Confidence            888988877311  000     0 0    2346889999999988654322111        13557777766

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=85.34  E-value=0.67  Score=38.89  Aligned_cols=21  Identities=5%  Similarity=0.137  Sum_probs=15.0

Q ss_pred             HHHHHHHhcCCCccEEEEeec
Q 014150          317 LAALCLLRSSPNLQELEMLAR  337 (430)
Q Consensus       317 ~~l~~ll~~~p~L~~L~l~~~  337 (430)
                      ..+...|+.-+.|++|+++++
T Consensus       147 ~~ia~aL~~N~tL~~L~l~~~  167 (197)
T 1pgv_A          147 MDMMMAIEENESLLRVGISFA  167 (197)
T ss_dssp             HHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHHHHhCCCcCeEeccCC
Confidence            456667777888888877654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=84.78  E-value=0.25  Score=41.56  Aligned_cols=132  Identities=13%  Similarity=0.089  Sum_probs=80.2

Q ss_pred             chHHHHhccCCCccEEEEeee-eeehh---hcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEe
Q 014150          260 CKLLRFFVHLPHIRRLEIQSY-FLKYL---AIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEML  335 (430)
Q Consensus       260 ~~~~~~l~~~~~L~~L~l~~~-~~~~~---~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~  335 (430)
                      ..+..++.+-+.|++|.|+++ .+...   .......    .-..|+.|+|..+..+......+...|+.-..|++|+|+
T Consensus        31 ~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~----~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~  106 (197)
T 1pgv_A           31 SCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAAC----NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVE  106 (197)
T ss_dssp             HHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHT----TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECC
T ss_pred             HHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHh----hCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecC
Confidence            345667777889999999864 33211   1111111    123688899866665666667788889999999999998


Q ss_pred             ecCCCCcccccccceecccccccccCceEEEEEe----eecCccHHHHHHHHHccCCCcceEEEeecCCC
Q 014150          336 ARPEETGIGVLTNFWEVDHWTSLFSQLRMVKIVG----ISGIRSELEFIKFVLSNSPVLETMTIKPASLE  401 (430)
Q Consensus       336 ~~~~~~~~~~~~~~w~~~~~~~~~~~L~~v~i~~----~~~~~~e~~~~~~il~~~~~L~~l~i~~~~~~  401 (430)
                      .+.-...+..   ..-+ .. ..-+.|+.+.+.+    .-|...+.+++..+ +..+.|+++.+.+...+
T Consensus       107 ~N~Ig~~Ga~---ala~-aL-~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL-~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          107 SNFLTPELLA---RLLR-ST-LVTQSIVEFKADNQRQSVLGNQVEMDMMMAI-EENESLLRVGISFASME  170 (197)
T ss_dssp             SSBCCHHHHH---HHHH-HT-TTTCCCSEEECCCCSSCCCCHHHHHHHHHHH-HHCSSCCEEECCCCCHH
T ss_pred             CCcCCHHHHH---HHHH-HH-hhCCceeEEECCCCcCcCcCHHHHHHHHHHH-HhCCCcCeEeccCCCcc
Confidence            8764310000   0000 00 1235688888864    22445566777655 55578999998866533

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=80.83  E-value=4.2  Score=37.94  Aligned_cols=117  Identities=15%  Similarity=0.230  Sum_probs=60.8

Q ss_pred             cCceeEEEEeeeee-cCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEEE----eCCCcceE
Q 014150          146 CQNLIHLELFNCLL-KPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNI----DAPNLQFF  220 (430)
Q Consensus       146 ~~~L~~L~L~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~i----~~p~L~~L  220 (430)
                      |..|+.+.+..... .....|..+++|+...+....+.+.    .+..|..|+++.+.+  .+..+.-    .+.+|+.+
T Consensus       252 ~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~----~F~~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i  325 (394)
T 4fs7_A          252 CTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEK----TFYGCSSLTEVKLLD--SVKFIGEEAFESCTSLVSI  325 (394)
T ss_dssp             CSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTT----TTTTCTTCCEEEECT--TCCEECTTTTTTCTTCCEE
T ss_pred             cccceeEEcCCCcceeeccccccccccceeccCceeeccc----ccccccccccccccc--ccceechhhhcCCCCCCEE
Confidence            44555555443211 1123444555666555544443322    245677777777653  2222211    23566666


Q ss_pred             EEeccc---cceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeee
Q 014150          221 DIGGVF---DDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSY  280 (430)
Q Consensus       221 ~l~~~~---~~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~  280 (430)
                      .+-...   +...|.+|.+|+.+.+...  ...          .-...+.+|++|+.+.+...
T Consensus       326 ~lp~~v~~I~~~aF~~c~~L~~i~lp~~--l~~----------I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          326 DLPYLVEEIGKRSFRGCTSLSNINFPLS--LRK----------IGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             CCCTTCCEECTTTTTTCTTCCEECCCTT--CCE----------ECTTTBTTCTTCCEEEEEGG
T ss_pred             EeCCcccEEhHHhccCCCCCCEEEECcc--ccE----------ehHHHhhCCCCCCEEEECCC
Confidence            664322   2335677888888876321  000          00133688999999999754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	430
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	4e-05
d1nexb1	100	a.158.1.1 (B:270-369) Cdc4 F-box and linker domain	9e-05
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	0.004

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (93), Expect = 4e-05
 Identities = 10/35 (28%), Positives = 18/35 (51%)

Query: 18 DRLSSLPAHVIDQILSQLPIRDAVRTSVLSKKWRY 52
          D +S LP  +   +LS L  +D ++ +   + WR 
Sbjct: 17 DFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRI 51

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.2 bits (91), Expect = 9e-05
 Identities = 10/43 (23%), Positives = 19/43 (44%)

Query: 18 DRLSSLPAHVIDQILSQLPIRDAVRTSVLSKKWRYKWATVPHL 60
          D ++SLP  +  +I + L   D + +  +S+ W         L
Sbjct: 4  DLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSL 46

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.7 bits (75), Expect = 0.004
 Identities = 9/31 (29%), Positives = 17/31 (54%)

Query: 21 SSLPAHVIDQILSQLPIRDAVRTSVLSKKWR 51
           SLP  ++  I S L + + ++ S + K+W 
Sbjct: 2  DSLPDELLLGIFSCLCLPELLKVSGVCKRWY 32

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	430
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.25
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.09
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.04
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.72
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.71
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.54
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.53
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.51
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.5
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.49
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.44
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.39
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.39
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.38
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.35
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.32
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.3
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.29
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.17
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.17
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.16
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.11
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.1
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.09
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.06
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.06
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.98
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	97.96
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	97.95
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	97.95
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	97.65
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.65
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.42
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	96.89
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	96.88
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	96.82
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.76
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	96.71
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.43
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.32
d2ifga3	156	High affinity nerve growth factor receptor, N-term	96.07
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.48
d2ifga3	156	High affinity nerve growth factor receptor, N-term	94.72
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	92.78
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	91.7
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	89.2

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=6.2e-14  Score=126.46  Aligned_cols=190  Identities=18%  Similarity=0.144  Sum_probs=115.5

Q ss_pred             CCceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEE-echhhHHHHhhcCccccc
Q 014150          122 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHIT-LSQDVFENLISSSPTLER  198 (430)
Q Consensus       122 ~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~-~~~~~l~~l~s~cp~Le~  198 (430)
                      .+++++++..+......++..+..|++|++|+|++|.+.+  ...+..+++|++|+|++|. +++..+..++.+||+|++
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~  125 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  125 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence            4677776643322222344445678889999998887654  2345578889999998865 787788888888999999


Q ss_pred             eEeeccCCceEE------EEeCCCcceEEEeccccce-------eeccCCCceEEEEEEEeeccccccCCCCCcchHHHH
Q 014150          199 LTLMNFDGFTHL------NIDAPNLQFFDIGGVFDDV-------TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRF  265 (430)
Q Consensus       199 L~l~~c~~~~~l------~i~~p~L~~L~l~~~~~~~-------~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~  265 (430)
                      |++++|..+..-      ...+++|+.|.+.|+...+       ....+|+|++|+++.+...         ++.. ...
T Consensus       126 L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~i---------td~~-~~~  195 (284)
T d2astb2         126 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVML---------KNDC-FQE  195 (284)
T ss_dssp             EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTC---------CGGG-GGG
T ss_pred             cccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCC---------Cchh-hhh
Confidence            999888655321      1125788888887642211       1245778888877654332         1111 233


Q ss_pred             hccCCCccEEEEeeee-eehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCcc
Q 014150          266 FVHLPHIRRLEIQSYF-LKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQ  330 (430)
Q Consensus       266 l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~  330 (430)
                      +..+++|++|.++++. +...    ....+. .+++|+.|++..+.. ..   ++..+.+.||+|+
T Consensus       196 l~~~~~L~~L~L~~C~~i~~~----~l~~L~-~~~~L~~L~l~~~~~-d~---~l~~l~~~lp~L~  252 (284)
T d2astb2         196 FFQLNYLQHLSLSRCYDIIPE----TLLELG-EIPTLKTLQVFGIVP-DG---TLQLLKEALPHLQ  252 (284)
T ss_dssp             GGGCTTCCEEECTTCTTCCGG----GGGGGG-GCTTCCEEECTTSSC-TT---CHHHHHHHSTTSE
T ss_pred             hcccCcCCEEECCCCCCCChH----HHHHHh-cCCCCCEEeeeCCCC-HH---HHHHHHHhCcccc
Confidence            4567888888887642 2111    111122 456788777743321 11   3555667777776

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=3.1e-11  Score=73.11  Aligned_cols=35  Identities=26%  Similarity=0.377  Sum_probs=32.7

Q ss_pred             cCCCcHHHHHHHHcCCCchhhhhhhhhhhhhHhhc
Q 014150           20 LSSLPAHVIDQILSQLPIRDAVRTSVLSKKWRYKW   54 (430)
Q Consensus        20 is~LPdelL~~Ils~L~~~d~~r~s~vskrWr~lw   54 (430)
                      ++.||+|++.+||+|||.+|+++++.|||+|+++-
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~   35 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLA   35 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHH
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            46899999999999999999999999999999864

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=4.5e-11  Score=107.29  Aligned_cols=59  Identities=22%  Similarity=0.422  Sum_probs=26.2

Q ss_pred             CceeEEEEeeeeecCC---CCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCC
Q 014150          147 QNLIHLELFNCLLKPP---STFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDG  206 (430)
Q Consensus       147 ~~L~~L~L~~~~~~~~---~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~  206 (430)
                      .+|++|++++|.+...   .-+.+|++|++|+|.++.+++..+.. ++.|++|++|++++|..
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~-l~~~~~L~~L~Ls~c~~  107 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSG  107 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHH-HTTCTTCSEEECTTCBS
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHH-HhcCCCCcCcccccccc
Confidence            3455555555443321   11234555555555555444433322 23445555555554443

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=2.8e-09  Score=79.36  Aligned_cols=39  Identities=26%  Similarity=0.343  Sum_probs=36.5

Q ss_pred             CCcccCCCcHHHHHHHHcCCCchhhhhhhhhhhhhHhhc
Q 014150           16 ELDRLSSLPAHVIDQILSQLPIRDAVRTSVLSKKWRYKW   54 (430)
Q Consensus        16 ~~d~is~LPdelL~~Ils~L~~~d~~r~s~vskrWr~lw   54 (430)
                      ..|.|+.||+||+.+||+|||++|+++++.|||+|+.+.
T Consensus        15 ~~D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~   53 (102)
T d2ovrb1          15 QRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILA   53 (102)
T ss_dssp             CCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHH
T ss_pred             ccCChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            469999999999999999999999999999999999853

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.71  E-value=1.1e-09  Score=81.28  Aligned_cols=42  Identities=21%  Similarity=0.339  Sum_probs=37.7

Q ss_pred             CcccCCCcHHHHHHHHcCCCchhhhhhhhhhhhhHhhcCcCC
Q 014150           17 LDRLSSLPAHVIDQILSQLPIRDAVRTSVLSKKWRYKWATVP   58 (430)
Q Consensus        17 ~d~is~LPdelL~~Ils~L~~~d~~r~s~vskrWr~lw~~~~   58 (430)
                      .|.|+.||+||+.+||++|+.+|+++++.|||+|+++..+.+
T Consensus         3 ~D~~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~d~   44 (100)
T d1nexb1           3 RDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKST   44 (100)
T ss_dssp             CCHHHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHTCS
T ss_pred             CCchhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCH
Confidence            588999999999999999999999999999999998654433

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.54  E-value=5.5e-09  Score=96.07  Aligned_cols=243  Identities=14%  Similarity=0.019  Sum_probs=127.6

Q ss_pred             cccccCceeEEEEeeeeecCC------------CCCCCCCCcceEEeeeEEechhh---HHHHhhcCccccceEeeccCC
Q 014150          142 SLFLCQNLIHLELFNCLLKPP------------STFKGFRNLKSLDLQHITLSQDV---FENLISSSPTLERLTLMNFDG  206 (430)
Q Consensus       142 ~~~~~~~L~~L~L~~~~~~~~------------~~~~~~~~L~~L~L~~~~~~~~~---l~~l~s~cp~Le~L~l~~c~~  206 (430)
                      .+...++|+.|+++++.....            ..+..+++|+.|+|.++.+++..   +...+..++.|++|.+.+|.-
T Consensus        54 ~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l  133 (344)
T d2ca6a1          54 NIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL  133 (344)
T ss_dssp             TTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred             HHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccccchhhhhcccccchheecccccc
Confidence            344456677777665532211            01224566777777766665432   333445566677776665531


Q ss_pred             ceE-EEEeCCCcceEEEeccccceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeehh
Q 014150          207 FTH-LNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYL  285 (430)
Q Consensus       207 ~~~-l~i~~p~L~~L~l~~~~~~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  285 (430)
                      ... ...-+..+..+     .........+.|+.+.++.....+       .....+...+..+++++.|.++.+.+...
T Consensus       134 ~~~~~~~l~~~l~~~-----~~~~~~~~~~~L~~l~l~~n~i~~-------~~~~~l~~~l~~~~~L~~L~L~~n~i~~~  201 (344)
T d2ca6a1         134 GPQAGAKIARALQEL-----AVNKKAKNAPPLRSIICGRNRLEN-------GSMKEWAKTFQSHRLLHTVKMVQNGIRPE  201 (344)
T ss_dssp             HHHHHHHHHHHHHHH-----HHHHHHHTCCCCCEEECCSSCCTG-------GGHHHHHHHHHHCTTCCEEECCSSCCCHH
T ss_pred             ccccccccccccccc-----ccccccccCcccceeecccccccc-------cccccccchhhhhhhhccccccccccccc
Confidence            100 00000000000     000011345667777664322110       01234566678889999999987765431


Q ss_pred             hcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCCCCcccccccceecccccccccCceEE
Q 014150          286 AIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNFWEVDHWTSLFSQLRMV  365 (430)
Q Consensus       286 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~w~~~~~~~~~~~L~~v  365 (430)
                      ............+++|+.|+++.+..+...+..+...+..+|+|+.|+|.++.-...   ......+....+....|+++
T Consensus       202 g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~---g~~~l~~~l~~~~~~~L~~L  278 (344)
T d2ca6a1         202 GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR---GAAAVVDAFSKLENIGLQTL  278 (344)
T ss_dssp             HHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHH---HHHHHHHHHHTCSSCCCCEE
T ss_pred             ccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCch---hhHHHHHHhhhccCCCCCEE
Confidence            111101111225778999998655444444556777889999999999988753210   00000000011234678888


Q ss_pred             EEEeeecC-ccHHHHHHHHHccCCCcceEEEeecC
Q 014150          366 KIVGISGI-RSELEFIKFVLSNSPVLETMTIKPAS  399 (430)
Q Consensus       366 ~i~~~~~~-~~e~~~~~~il~~~~~L~~l~i~~~~  399 (430)
                      .+.+-.-. .....+++.+-.+.+.|+++.|..+.
T Consensus       279 ~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~  313 (344)
T d2ca6a1         279 RLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR  313 (344)
T ss_dssp             ECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             ECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCc
Confidence            88754322 33345566665688999999987654

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.53  E-value=3.5e-08  Score=84.81  Aligned_cols=78  Identities=17%  Similarity=0.181  Sum_probs=53.2

Q ss_pred             CCceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEe
Q 014150          122 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTL  201 (430)
Q Consensus       122 ~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l  201 (430)
                      .+++.+.+..+...  .++ .+..+++|+.|++++|.+.....+..+++|+.|++.++.++.  +. -+..++.|+.|.+
T Consensus        41 ~~L~~L~l~~~~i~--~l~-~l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~--i~-~l~~l~~L~~l~l  114 (227)
T d1h6ua2          41 DGITTLSAFGTGVT--TIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKN--VS-AIAGLQSIKTLDL  114 (227)
T ss_dssp             HTCCEEECTTSCCC--CCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSC--CG-GGTTCTTCCEEEC
T ss_pred             CCcCEEECCCCCCC--cch-hHhcCCCCcEeecCCceeeccccccccccccccccccccccc--cc-ccccccccccccc
Confidence            46777766544322  343 356778888888888877665557788888888888876542  22 2457888888888


Q ss_pred             eccC
Q 014150          202 MNFD  205 (430)
Q Consensus       202 ~~c~  205 (430)
                      .++.
T Consensus       115 ~~~~  118 (227)
T d1h6ua2         115 TSTQ  118 (227)
T ss_dssp             TTSC
T ss_pred             cccc
Confidence            7764

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.51  E-value=3e-07  Score=85.08  Aligned_cols=76  Identities=16%  Similarity=0.193  Sum_probs=41.2

Q ss_pred             CCceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEe
Q 014150          122 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTL  201 (430)
Q Consensus       122 ~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l  201 (430)
                      .++++|.+......  .+ ..+..+++|++|+|++|.+...+.+.++++|+.|+++++.+.+-  . -++.+++|+.|.+
T Consensus        44 ~~l~~L~l~~~~I~--~l-~gl~~L~nL~~L~Ls~N~l~~l~~l~~L~~L~~L~L~~n~i~~i--~-~l~~l~~L~~L~~  117 (384)
T d2omza2          44 DQVTTLQADRLGIK--SI-DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADI--T-PLANLTNLTGLTL  117 (384)
T ss_dssp             TTCCEEECCSSCCC--CC-TTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--G-GGTTCTTCCEEEC
T ss_pred             CCCCEEECCCCCCC--Cc-cccccCCCCCEEeCcCCcCCCCccccCCcccccccccccccccc--c-ccccccccccccc
Confidence            35566555433222  12 12344566666666666665544456666666666666665432  1 1455666666665


Q ss_pred             ec
Q 014150          202 MN  203 (430)
Q Consensus       202 ~~  203 (430)
                      .+
T Consensus       118 ~~  119 (384)
T d2omza2         118 FN  119 (384)
T ss_dssp             CS
T ss_pred             cc
Confidence            53

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.50  E-value=3.9e-08  Score=82.67  Aligned_cols=78  Identities=15%  Similarity=0.174  Sum_probs=48.5

Q ss_pred             CCceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEe
Q 014150          122 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTL  201 (430)
Q Consensus       122 ~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l  201 (430)
                      .+++++.+......  .++ .+..+++|++|++++|.+....++.++++|+.|++.++.+..-  . -+++++.|+.|.+
T Consensus        40 ~~l~~L~l~~~~i~--~l~-~l~~l~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~~~~~--~-~l~~l~~L~~L~l  113 (199)
T d2omxa2          40 DQVTTLQADRLGIK--SID-GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADI--T-PLANLTNLTGLTL  113 (199)
T ss_dssp             TTCCEEECTTSCCC--CCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--G-GGTTCTTCSEEEC
T ss_pred             cCCCEEECCCCCCC--Ccc-ccccCCCcCcCccccccccCcccccCCcccccccccccccccc--c-ccccccccccccc
Confidence            46666665433221  222 2455677888888887776655566778888888877765332  1 1556777777777


Q ss_pred             eccC
Q 014150          202 MNFD  205 (430)
Q Consensus       202 ~~c~  205 (430)
                      .++.
T Consensus       114 ~~~~  117 (199)
T d2omxa2         114 FNNQ  117 (199)
T ss_dssp             CSSC
T ss_pred             cccc
Confidence            7654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.49  E-value=4e-08  Score=82.61  Aligned_cols=146  Identities=14%  Similarity=0.104  Sum_probs=89.8

Q ss_pred             ccCceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEEEeCCCcceEEEec
Q 014150          145 LCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDIGG  224 (430)
Q Consensus       145 ~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~i~~p~L~~L~l~~  224 (430)
                      ..+++++|+++++.+..-.++..|++|++|+|+++.+++-.  . +.++++|+.|.+.++.... +              
T Consensus        38 ~l~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~~--~-l~~l~~L~~L~l~~n~~~~-~--------------   99 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDIT--P-LKNLTKLVDILMNNNQIAD-I--------------   99 (199)
T ss_dssp             HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCC-C--------------
T ss_pred             HhcCCCEEECCCCCCCCccccccCCCcCcCccccccccCcc--c-ccCCccccccccccccccc-c--------------
Confidence            35789999999998877666778999999999999876432  2 6789999999998764321 1              


Q ss_pred             cccceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeehhhcccCCCCCCcccccccee
Q 014150          225 VFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYL  304 (430)
Q Consensus       225 ~~~~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L  304 (430)
                        .  .+.+++.|+.+++..+.....             ..+..+++|+.|.++++.+..+..      +. .+++|+.|
T Consensus       100 --~--~l~~l~~L~~L~l~~~~~~~~-------------~~~~~l~~L~~L~l~~n~l~~~~~------l~-~~~~L~~L  155 (199)
T d2omxa2         100 --T--PLANLTNLTGLTLFNNQITDI-------------DPLKNLTNLNRLELSSNTISDISA------LS-GLTSLQQL  155 (199)
T ss_dssp             --G--GGTTCTTCSEEECCSSCCCCC-------------GGGTTCTTCSEEECCSSCCCCCGG------GT-TCTTCSEE
T ss_pred             --c--ccccccccccccccccccccc-------------cccchhhhhHHhhhhhhhhccccc------cc-cccccccc
Confidence              0  134556666665543322110             114566777777776654432110      11 34566666


Q ss_pred             EEEEeeCChhhHHHHHHHHhcCCCccEEEEeecC
Q 014150          305 SIRINFNDLEENLAALCLLRSSPNLQELEMLARP  338 (430)
Q Consensus       305 ~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~  338 (430)
                      .+..+....     +. -+..+|+|+.|+++++.
T Consensus       156 ~l~~n~l~~-----l~-~l~~l~~L~~L~ls~N~  183 (199)
T d2omxa2         156 NFSSNQVTD-----LK-PLANLTTLERLDISSNK  183 (199)
T ss_dssp             ECCSSCCCC-----CG-GGTTCTTCCEEECCSSC
T ss_pred             ccccccccC-----Cc-cccCCCCCCEEECCCCC
Confidence            664332111     11 25667777777777764

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.44  E-value=7.3e-08  Score=81.71  Aligned_cols=77  Identities=17%  Similarity=0.135  Sum_probs=46.4

Q ss_pred             CceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEee
Q 014150          123 CVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLM  202 (430)
Q Consensus       123 ~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~  202 (430)
                      .++++.+..+..  ..++ .+..+++|++|++++|.+.....+..+++|+.|++.++.+++  +. -+..+++|+.|.+.
T Consensus        47 ~L~~L~l~~~~i--~~l~-~l~~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~l~  120 (210)
T d1h6ta2          47 SIDQIIANNSDI--KSVQ-GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD--LS-SLKDLKKLKSLSLE  120 (210)
T ss_dssp             TCCEEECTTSCC--CCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--GG-GGTTCTTCCEEECT
T ss_pred             CccEEECcCCCC--CCch-hHhhCCCCCEEeCCCccccCccccccCccccccccccccccc--cc-cccccccccccccc
Confidence            566665543222  1222 245567777777777776654445667777777777776653  22 24567777777777


Q ss_pred             ccC
Q 014150          203 NFD  205 (430)
Q Consensus       203 ~c~  205 (430)
                      ++.
T Consensus       121 ~~~  123 (210)
T d1h6ta2         121 HNG  123 (210)
T ss_dssp             TSC
T ss_pred             ccc
Confidence            654

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.39  E-value=2.2e-07  Score=79.61  Aligned_cols=164  Identities=15%  Similarity=0.130  Sum_probs=101.1

Q ss_pred             ccCceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEE--EeCCCcceEEE
Q 014150          145 LCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLN--IDAPNLQFFDI  222 (430)
Q Consensus       145 ~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~--i~~p~L~~L~l  222 (430)
                      .+.+|+.|++.+|.+..-.++.++++|++|+++++.+.+-.  . +..++.|+.|.+.++... .+.  -..++|+.+.+
T Consensus        39 ~l~~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~~--~-l~~l~~l~~l~~~~n~~~-~i~~l~~l~~L~~l~l  114 (227)
T d1h6ua2          39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLA--P-LKNLTKITELELSGNPLK-NVSAIAGLQSIKTLDL  114 (227)
T ss_dssp             HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCCSCCEEECCSCCCS-CCGGGTTCTTCCEEEC
T ss_pred             HcCCcCEEECCCCCCCcchhHhcCCCCcEeecCCceeeccc--c-cccccccccccccccccc-cccccccccccccccc
Confidence            45789999999998877667889999999999999876431  1 678999999999976422 221  12467777776


Q ss_pred             eccccc--eeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeehhhcccCCCCCCccccc
Q 014150          223 GGVFDD--VTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVD  300 (430)
Q Consensus       223 ~~~~~~--~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  300 (430)
                      .+....  ..+...+.+..+.+..+....         .    ..+.++++|++|.+..+......      .+ ..+++
T Consensus       115 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~----~~~~~~~~L~~L~l~~n~~~~~~------~l-~~l~~  174 (227)
T d1h6ua2         115 TSTQITDVTPLAGLSNLQVLYLDLNQITN---------I----SPLAGLTNLQYLSIGNAQVSDLT------PL-ANLSK  174 (227)
T ss_dssp             TTSCCCCCGGGTTCTTCCEEECCSSCCCC---------C----GGGGGCTTCCEEECCSSCCCCCG------GG-TTCTT
T ss_pred             ccccccccchhccccchhhhhchhhhhch---------h----hhhccccccccccccccccccch------hh-ccccc
Confidence            553211  123345566666553322110         0    11456777888887766543210      01 13567


Q ss_pred             cceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecC
Q 014150          301 LNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARP  338 (430)
Q Consensus       301 L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~  338 (430)
                      |+.|+++.+...  +   +. .+.++|+|+.|+|+++.
T Consensus       175 L~~L~Ls~n~l~--~---l~-~l~~l~~L~~L~Ls~N~  206 (227)
T d1h6ua2         175 LTTLKADDNKIS--D---IS-PLASLPNLIEVHLKNNQ  206 (227)
T ss_dssp             CCEEECCSSCCC--C---CG-GGGGCTTCCEEECTTSC
T ss_pred             ceecccCCCccC--C---Ch-hhcCCCCCCEEECcCCc
Confidence            777777443211  1   21 25677888888887764

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=2.7e-08  Score=87.82  Aligned_cols=63  Identities=24%  Similarity=0.334  Sum_probs=39.2

Q ss_pred             ccCCCcccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeecc
Q 014150          137 YKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNF  204 (430)
Q Consensus       137 ~~lp~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c  204 (430)
                      ..+|..+.  ++++.|+|++|.+..  +..|.++++|++|+|.++.++.  +. ..+.++.|+.|+++++
T Consensus        23 ~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~--l~-~~~~l~~L~~L~Ls~N   87 (266)
T d1p9ag_          23 TALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK--LQ-VDGTLPVLGTLDLSHN   87 (266)
T ss_dssp             SSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE--EE-CCSCCTTCCEEECCSS
T ss_pred             CeeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc--cc-cccccccccccccccc
Confidence            34565442  467788888776653  3456677888888887776542  11 1245677777777765

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.38  E-value=2.3e-07  Score=78.50  Aligned_cols=161  Identities=16%  Similarity=0.117  Sum_probs=106.6

Q ss_pred             cCceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEE--EeCCCcceEEEe
Q 014150          146 CQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLN--IDAPNLQFFDIG  223 (430)
Q Consensus       146 ~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~--i~~p~L~~L~l~  223 (430)
                      ..+|+.|+++++.+....++..+++|++|+|+++.+++-  .. ++.+++|+.|.+.++. ++.+.  ...++|+.|.+.
T Consensus        45 L~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l--~~-~~~l~~L~~L~l~~n~-i~~l~~l~~l~~L~~L~l~  120 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDI--KP-LANLKNLGWLFLDENK-VKDLSSLKDLKKLKSLSLE  120 (210)
T ss_dssp             HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSC-CCCGGGGTTCTTCCEEECT
T ss_pred             hcCccEEECcCCCCCCchhHhhCCCCCEEeCCCccccCc--cc-cccCcccccccccccc-ccccccccccccccccccc
Confidence            467889999988887766677899999999999887642  22 4678999999998764 22221  124788888887


Q ss_pred             cccc-c-eeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeehhhcccCCCCCCcccccc
Q 014150          224 GVFD-D-VTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDL  301 (430)
Q Consensus       224 ~~~~-~-~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L  301 (430)
                      ++.. . ..+..+++++.+++......+.             .....+++|+.+.++++.+..+..      + ..+++|
T Consensus       121 ~~~~~~~~~l~~l~~l~~l~~~~n~l~~~-------------~~~~~l~~L~~l~l~~n~l~~i~~------l-~~l~~L  180 (210)
T d1h6ta2         121 HNGISDINGLVHLPQLESLYLGNNKITDI-------------TVLSRLTKLDTLSLEDNQISDIVP------L-AGLTKL  180 (210)
T ss_dssp             TSCCCCCGGGGGCTTCCEEECCSSCCCCC-------------GGGGGCTTCSEEECCSSCCCCCGG------G-TTCTTC
T ss_pred             ccccccccccccccccccccccccccccc-------------cccccccccccccccccccccccc------c-cCCCCC
Confidence            6432 1 1355677788777754432111             124678899999998876542211      1 146688


Q ss_pred             ceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEee
Q 014150          302 NYLSIRINFNDLEENLAALCLLRSSPNLQELEMLA  336 (430)
Q Consensus       302 ~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~  336 (430)
                      +.|+++.+...  +   +. -+.++++|+.|+|++
T Consensus       181 ~~L~Ls~N~i~--~---l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         181 QNLYLSKNHIS--D---LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CEEECCSSCCC--B---CG-GGTTCTTCSEEEEEE
T ss_pred             CEEECCCCCCC--C---Ch-hhcCCCCCCEEEccC
Confidence            98888544322  2   22 367889999999875

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=2.6e-07  Score=87.40  Aligned_cols=126  Identities=13%  Similarity=-0.061  Sum_probs=61.8

Q ss_pred             cCCCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHH-hcCCCccEEEEeecCCCCccccc
Q 014150          268 HLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLL-RSSPNLQELEMLARPEETGIGVL  346 (430)
Q Consensus       268 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll-~~~p~L~~L~l~~~~~~~~~~~~  346 (430)
                      ..+.|+.+.++.+.+....... ........++|++|+++....+...+..+...+ +..+.|+.|+++++.-...+.. 
T Consensus       310 ~~~~L~~l~l~~~~l~~~~~~~-l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~-  387 (460)
T d1z7xw1         310 PGCQLESLWVKSCSFTAACCSH-FSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCS-  387 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHH-HHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHH-
T ss_pred             cccccccccccccchhhhhhhh-cccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHH-
Confidence            3467888887765443211100 000111234688887755433222233333333 3567788888877653200000 


Q ss_pred             ccceecccccccccCceEEEEEeeec-CccHHHHHHHHHccCCCcceEEEeecC
Q 014150          347 TNFWEVDHWTSLFSQLRMVKIVGISG-IRSELEFIKFVLSNSPVLETMTIKPAS  399 (430)
Q Consensus       347 ~~~w~~~~~~~~~~~L~~v~i~~~~~-~~~e~~~~~~il~~~~~L~~l~i~~~~  399 (430)
                        ...+...  ..++|+++.+.+-.- ...-..++..+-.+...||.+.+....
T Consensus       388 --~l~~~l~--~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~  437 (460)
T d1z7xw1         388 --SLAATLL--ANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIY  437 (460)
T ss_dssp             --HHHHHHH--HCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred             --HHHHHHh--cCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCC
Confidence              0000000  236677777664321 123345666666677778888887655

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=6.1e-08  Score=73.90  Aligned_cols=38  Identities=26%  Similarity=0.524  Sum_probs=35.0

Q ss_pred             CCcccCCCc----HHHHHHHHcCCCchhhhhhhhhhhhhHhh
Q 014150           16 ELDRLSSLP----AHVIDQILSQLPIRDAVRTSVLSKKWRYK   53 (430)
Q Consensus        16 ~~d~is~LP----delL~~Ils~L~~~d~~r~s~vskrWr~l   53 (430)
                      ..|.++.||    |||+.+||+|||.+|+++++.|||+|+++
T Consensus         7 ~~D~i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l   48 (118)
T d1p22a1           7 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV   48 (118)
T ss_dssp             CCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHH
T ss_pred             cccHHHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            458899999    59999999999999999999999999875

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.30  E-value=2.2e-07  Score=83.41  Aligned_cols=65  Identities=29%  Similarity=0.302  Sum_probs=40.0

Q ss_pred             ccCCCcccccCceeEEEEeeeeecC-C-CCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeecc
Q 014150          137 YKVPSSLFLCQNLIHLELFNCLLKP-P-STFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNF  204 (430)
Q Consensus       137 ~~lp~~~~~~~~L~~L~L~~~~~~~-~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c  204 (430)
                      ..+|..+.  +++++|+|++|.+.. + ..|.++++|++|++.++.+..- ....+..++.|+.|.+.++
T Consensus        23 ~~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i-~~~~f~~l~~L~~L~l~~n   89 (305)
T d1xkua_          23 EKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI-SPGAFAPLVKLERLYLSKN   89 (305)
T ss_dssp             CSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSS
T ss_pred             CccCCCCC--CCCCEEECcCCcCCCcChhHhhcccccccccccccccccc-chhhhhCCCccCEecccCC
Confidence            34555443  467777777776654 2 3566777777777777765421 1233556777777777765

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=2.1e-07  Score=82.68  Aligned_cols=180  Identities=16%  Similarity=0.070  Sum_probs=97.6

Q ss_pred             ccCCCcccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEEE--
Q 014150          137 YKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNI--  212 (430)
Q Consensus       137 ~~lp~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~i--  212 (430)
                      ..+|..+.  +++++|+|++|.+..  +..|.++++|+.|+++++.+..-. ......++.++.+.+.....+..+.-  
T Consensus        24 ~~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~-~~~~~~~~~~~~l~~~~~~~~~~l~~~~  100 (284)
T d1ozna_          24 QAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID-AAAFTGLALLEQLDLSDNAQLRSVDPAT  100 (284)
T ss_dssp             SSCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSCTTCCCCCTTT
T ss_pred             CccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccc-cccccccccccccccccccccccccchh
Confidence            35555433  467888888887754  345778888999988887754321 22345577777777665544433221  


Q ss_pred             --eCCCcceEEEecccc----ceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeehhh
Q 014150          213 --DAPNLQFFDIGGVFD----DVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLA  286 (430)
Q Consensus       213 --~~p~L~~L~l~~~~~----~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  286 (430)
                        ..++|+.|.+.+...    ...+...++|+.+++.........           ...+..+++|++|+++.+.+..+.
T Consensus       101 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~-----------~~~f~~~~~L~~L~l~~N~l~~l~  169 (284)
T d1ozna_         101 FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP-----------DDTFRDLGNLTHLFLHGNRISSVP  169 (284)
T ss_dssp             TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-----------TTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             hcccccCCEEecCCcccccccccccchhcccchhhhccccccccC-----------hhHhccccchhhcccccCcccccc
Confidence              125667766655321    112344566666666543221110           122456677777777766554321


Q ss_pred             cccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCC
Q 014150          287 IGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPE  339 (430)
Q Consensus       287 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~  339 (430)
                      ..     ....+++|+.+.+.......  +  .+..++.+++|+.|++..+.-
T Consensus       170 ~~-----~f~~l~~L~~l~l~~N~l~~--i--~~~~f~~l~~L~~L~l~~N~i  213 (284)
T d1ozna_         170 ER-----AFRGLHSLDRLLLHQNRVAH--V--HPHAFRDLGRLMTLYLFANNL  213 (284)
T ss_dssp             TT-----TTTTCTTCCEEECCSSCCCE--E--CTTTTTTCTTCCEEECCSSCC
T ss_pred             hh-----hhccccccchhhhhhccccc--c--ChhHhhhhhhccccccccccc
Confidence            11     11134566666663322111  1  123456677777777776553

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.17  E-value=3.5e-07  Score=84.69  Aligned_cols=185  Identities=15%  Similarity=0.045  Sum_probs=116.1

Q ss_pred             ccccCceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEE--EEeCCCcceE
Q 014150          143 LFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHL--NIDAPNLQFF  220 (430)
Q Consensus       143 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l--~i~~p~L~~L  220 (430)
                      ...++++..+.++++.+.....+..+++|++|++.++.+.+-  . .+..++.|+.|.+.++.-. .+  ....++|+.|
T Consensus       193 ~~~l~~~~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~L~~L  268 (384)
T d2omza2         193 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI--G-TLASLTNLTDLDLANNQIS-NLAPLSGLTKLTEL  268 (384)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC--G-GGGGCTTCSEEECCSSCCC-CCGGGTTCTTCSEE
T ss_pred             cccccccceeeccCCccCCCCcccccCCCCEEECCCCCCCCc--c-hhhcccccchhccccCccC-CCCcccccccCCEe
Confidence            445688899999988776644456788999999998877542  2 2567899999998876421 11  1124788888


Q ss_pred             EEeccc-cc-eeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeehhhcccCCCCCCccc
Q 014150          221 DIGGVF-DD-VTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPC  298 (430)
Q Consensus       221 ~l~~~~-~~-~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  298 (430)
                      .+.+.. .. ..+..++.++.+.+..+...+            + ..+..+++++.|+++.+.+..+.      .+ ..+
T Consensus       269 ~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~------------~-~~~~~~~~l~~L~ls~n~l~~l~------~l-~~l  328 (384)
T d2omza2         269 KLGANQISNISPLAGLTALTNLELNENQLED------------I-SPISNLKNLTYLTLYFNNISDIS------PV-SSL  328 (384)
T ss_dssp             ECCSSCCCCCGGGTTCTTCSEEECCSSCCSC------------C-GGGGGCTTCSEEECCSSCCSCCG------GG-GGC
T ss_pred             eccCcccCCCCcccccccccccccccccccc------------c-cccchhcccCeEECCCCCCCCCc------cc-ccC
Confidence            887532 11 124566677776654332110            1 12577888999999877654321      11 257


Q ss_pred             cccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCCCCcccccccceecccccccccCceEEEEE
Q 014150          299 VDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNFWEVDHWTSLFSQLRMVKIV  368 (430)
Q Consensus       299 ~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~w~~~~~~~~~~~L~~v~i~  368 (430)
                      ++|++|+++.+....     +. -+..+|+|++|+++++.-...           .+-..+++|+.+.+.
T Consensus       329 ~~L~~L~L~~n~l~~-----l~-~l~~l~~L~~L~l~~N~l~~l-----------~~l~~l~~L~~L~L~  381 (384)
T d2omza2         329 TKLQRLFFANNKVSD-----VS-SLANLTNINWLSAGHNQISDL-----------TPLANLTRITQLGLN  381 (384)
T ss_dssp             TTCCEEECCSSCCCC-----CG-GGGGCTTCCEEECCSSCCCBC-----------GGGTTCTTCSEEECC
T ss_pred             CCCCEEECCCCCCCC-----Ch-hHcCCCCCCEEECCCCcCCCC-----------hhhccCCCCCEeeCC
Confidence            789998885443221     22 267799999999988753310           011145788887765

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.17  E-value=1.1e-06  Score=79.14  Aligned_cols=81  Identities=23%  Similarity=0.204  Sum_probs=59.9

Q ss_pred             CceEEEEEecCC-CcccCCCcccccCceeEEEEee-eeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccc
Q 014150          123 CVKEFILEIWKG-QRYKVPSSLFLCQNLIHLELFN-CLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLER  198 (430)
Q Consensus       123 ~l~~l~l~~~~~-~~~~lp~~~~~~~~L~~L~L~~-~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~  198 (430)
                      .|.++++..... ....+|..+..+++|++|+|++ +.+..  |..+.++++|++|+|+++.+.+. ....+..++.|+.
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~-~~~~~~~~~~L~~  129 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTLVT  129 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE-CCGGGGGCTTCCE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhcccccccc-ccccccchhhhcc
Confidence            467777764332 2346889999999999999987 45652  56788999999999999987543 2334567888999


Q ss_pred             eEeecc
Q 014150          199 LTLMNF  204 (430)
Q Consensus       199 L~l~~c  204 (430)
                      +.+.++
T Consensus       130 l~l~~N  135 (313)
T d1ogqa_         130 LDFSYN  135 (313)
T ss_dssp             EECCSS
T ss_pred             cccccc
Confidence            888865

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.16  E-value=6.4e-07  Score=80.63  Aligned_cols=219  Identities=16%  Similarity=0.081  Sum_probs=128.6

Q ss_pred             ceeEEEEEeccCCCcchHHHHHHHHHhCCceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecC--CCCCCCCCCcc
Q 014150           95 PILKFKLSHRDLLGVSDIDRWILYMSRSCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLK  172 (430)
Q Consensus        95 ~l~~l~l~~~~~~~~~~v~~wl~~~~~~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~  172 (430)
                      .|..+.+......+...+..-+  ..-..++.|++..+..-.-.+|..+..+++|++|+|++|.+..  +..+..+++|+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l--~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~  128 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSL--ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGG--GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             EEEEEECCCCCCCCCCCCChHH--hcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhc
Confidence            5778888775443322222211  1236899999975322223689999999999999999998764  34467899999


Q ss_pred             eEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEEE---eCCC-cceEEEecc-ccce---eeccCCCceEEEEEE
Q 014150          173 SLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNI---DAPN-LQFFDIGGV-FDDV---TFENTFHLALVSIGL  244 (430)
Q Consensus       173 ~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~i---~~p~-L~~L~l~~~-~~~~---~~~~~p~L~~l~i~~  244 (430)
                      .+++..+.+... +...+..++.|+.+.+.++.....+.-   ..++ ++.+.+.+. ....   .+..+. +..+++..
T Consensus       129 ~l~l~~N~~~~~-~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~-~~~l~l~~  206 (313)
T d1ogqa_         129 TLDFSYNALSGT-LPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR  206 (313)
T ss_dssp             EEECCSSEEESC-CCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCS
T ss_pred             cccccccccccc-CchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence            999999886543 344577899999999987643221110   1123 244444332 1111   112221 22333322


Q ss_pred             EeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHh
Q 014150          245 YVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLR  324 (430)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~  324 (430)
                      ....           .........+++++.+.+..+.+.....     .+. .+++|+.|+++.+....    .++.-+.
T Consensus       207 ~~~~-----------~~~~~~~~~~~~l~~l~~~~~~l~~~~~-----~~~-~~~~L~~L~Ls~N~l~g----~iP~~l~  265 (313)
T d1ogqa_         207 NMLE-----------GDASVLFGSDKNTQKIHLAKNSLAFDLG-----KVG-LSKNLNGLDLRNNRIYG----TLPQGLT  265 (313)
T ss_dssp             SEEE-----------ECCGGGCCTTSCCSEEECCSSEECCBGG-----GCC-CCTTCCEEECCSSCCEE----CCCGGGG
T ss_pred             cccc-----------cccccccccccccccccccccccccccc-----ccc-cccccccccCccCeecc----cCChHHh
Confidence            2111           1112335677889999888776532111     111 35688888885432211    2445578


Q ss_pred             cCCCccEEEEeecC
Q 014150          325 SSPNLQELEMLARP  338 (430)
Q Consensus       325 ~~p~L~~L~l~~~~  338 (430)
                      ++|+|+.|+|+++.
T Consensus       266 ~L~~L~~L~Ls~N~  279 (313)
T d1ogqa_         266 QLKFLHSLNVSFNN  279 (313)
T ss_dssp             GCTTCCEEECCSSE
T ss_pred             CCCCCCEEECcCCc
Confidence            89999999998864

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.11  E-value=1.7e-07  Score=78.45  Aligned_cols=114  Identities=21%  Similarity=0.227  Sum_probs=77.1

Q ss_pred             cCCCcccccCceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEEEeCCCc
Q 014150          138 KVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNL  217 (430)
Q Consensus       138 ~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~i~~p~L  217 (430)
                      .+|..+..+++|++|+|++|.+....++.++++|+.|+|+++.+..  +..+...++.|+.|.+.++. +..        
T Consensus        39 ~l~~sl~~L~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N~i~~--i~~~~~~~~~L~~L~l~~N~-i~~--------  107 (198)
T d1m9la_          39 KMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQ-IAS--------  107 (198)
T ss_dssp             CCHHHHHHTTTCCEEECSEEEESCCCCHHHHTTCCEEECCEEEECS--CSSHHHHHHHCCEEECSEEE-CCC--------
T ss_pred             hhhhHHhcccccceeECcccCCCCcccccCCccccChhhccccccc--cccccccccccccccccccc-ccc--------
Confidence            4555667788999999999998876667789999999999998863  23334456778888887652 111        


Q ss_pred             ceEEEeccccceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeee
Q 014150          218 QFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFL  282 (430)
Q Consensus       218 ~~L~l~~~~~~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  282 (430)
                              ..  .+..+++|+.|+++.+...         +... ...+..+++|+.|.++++.+
T Consensus       108 --------l~--~~~~l~~L~~L~L~~N~i~---------~~~~-~~~l~~l~~L~~L~L~~N~l  152 (198)
T d1m9la_         108 --------LS--GIEKLVNLRVLYMSNNKIT---------NWGE-IDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             --------HH--HHHHHHHSSEEEESEEECC---------CHHH-HHHHTTTTTCSEEEECSSHH
T ss_pred             --------cc--cccccccccccccccchhc---------cccc-cccccCCCccceeecCCCcc
Confidence                    01  1345677888888765432         1111 13467788888888887654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.10  E-value=2e-06  Score=76.97  Aligned_cols=76  Identities=21%  Similarity=0.169  Sum_probs=50.6

Q ss_pred             CCceEEEEEecCCCcccCCCc-ccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccc
Q 014150          122 SCVKEFILEIWKGQRYKVPSS-LFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLER  198 (430)
Q Consensus       122 ~~l~~l~l~~~~~~~~~lp~~-~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~  198 (430)
                      ++++.|++....  -..+|.. +..+++|++|+++++.+..  +..|.++++|+.|++.++.+..-  .  ...++.|+.
T Consensus        31 ~~l~~L~Ls~N~--i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l--~--~~~~~~l~~  104 (305)
T d1xkua_          31 PDTALLDLQNNK--ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL--P--EKMPKTLQE  104 (305)
T ss_dssp             TTCCEEECCSSC--CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBC--C--SSCCTTCCE
T ss_pred             CCCCEEECcCCc--CCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcC--c--cchhhhhhh
Confidence            567777765432  2356653 4567899999999887655  45577889999999988875421  1  123456677


Q ss_pred             eEeec
Q 014150          199 LTLMN  203 (430)
Q Consensus       199 L~l~~  203 (430)
                      |.+.+
T Consensus       105 L~~~~  109 (305)
T d1xkua_         105 LRVHE  109 (305)
T ss_dssp             EECCS
T ss_pred             hhccc
Confidence            76664

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=4.9e-07  Score=79.47  Aligned_cols=164  Identities=18%  Similarity=0.052  Sum_probs=100.1

Q ss_pred             CCceEEEEEecCCCcccCCCc-ccccCceeEEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceE
Q 014150          122 SCVKEFILEIWKGQRYKVPSS-LFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLT  200 (430)
Q Consensus       122 ~~l~~l~l~~~~~~~~~lp~~-~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~  200 (430)
                      ++++.|++.....  ..+|.. +..+++|++|+|++|.+.....+..+++|++|+|+++.+...  ...+...+.|+.|.
T Consensus        31 ~~l~~L~Ls~N~i--~~l~~~~f~~l~~L~~L~L~~N~l~~l~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~l~~L~~L~  106 (266)
T d1p9ag_          31 KDTTILHLSENLL--YTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSL--PLLGQTLPALTVLD  106 (266)
T ss_dssp             TTCCEEECTTSCC--SEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSC--CCCTTTCTTCCEEE
T ss_pred             cCCCEEECcCCcC--CCcCHHHhhcccccccccccccccccccccccccccccccccccccccc--cccccccccccccc
Confidence            5788887754322  245543 456799999999999876544567899999999999987542  33466789999999


Q ss_pred             eeccCCceEEE----EeCCCcceEEEeccc----cceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCc
Q 014150          201 LMNFDGFTHLN----IDAPNLQFFDIGGVF----DDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHI  272 (430)
Q Consensus       201 l~~c~~~~~l~----i~~p~L~~L~l~~~~----~~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L  272 (430)
                      +.++.... +.    ...++++.|.+.+..    ....+..+++|+.++++.+......           ...+..+++|
T Consensus       107 l~~~~~~~-~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~-----------~~~~~~l~~L  174 (266)
T d1p9ag_         107 VSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP-----------AGLLNGLENL  174 (266)
T ss_dssp             CCSSCCCC-CCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC-----------TTTTTTCTTC
T ss_pred             ccccccce-eeccccccccccccccccccccceeccccccccccchhcccccccccccC-----------cccccccccc
Confidence            98764321 11    123566666665431    1222445667777766543221110           1224667777


Q ss_pred             cEEEEeeeeeehhhcccCCCCCCccccccceeEEE
Q 014150          273 RRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIR  307 (430)
Q Consensus       273 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~  307 (430)
                      ++|+|+++.+..+..+     +. .+++|+.|.++
T Consensus       175 ~~L~Ls~N~L~~lp~~-----~~-~~~~L~~L~L~  203 (266)
T d1p9ag_         175 DTLLLQENSLYTIPKG-----FF-GSHLLPFAFLH  203 (266)
T ss_dssp             CEEECCSSCCCCCCTT-----TT-TTCCCSEEECC
T ss_pred             ceeecccCCCcccChh-----HC-CCCCCCEEEec
Confidence            7888777766533211     11 24567777773

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=7.7e-07  Score=71.75  Aligned_cols=58  Identities=10%  Similarity=0.080  Sum_probs=33.1

Q ss_pred             ccCceeEEEEeeeeecCCCC-CCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccC
Q 014150          145 LCQNLIHLELFNCLLKPPST-FKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFD  205 (430)
Q Consensus       145 ~~~~L~~L~L~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~  205 (430)
                      ++.+++.|+|++|.+..-++ +..+++|+.|+|+++.+..  +.. ++.+++|++|.++++.
T Consensus        16 n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~--l~~-~~~l~~L~~L~ls~N~   74 (162)
T d1a9na_          16 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRK--LDG-FPLLRRLKTLLVNNNR   74 (162)
T ss_dssp             CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCE--ECC-CCCCSSCCEEECCSSC
T ss_pred             CcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCc--cCC-cccCcchhhhhccccc
Confidence            44566667777666654222 2456667777776666542  111 4556666666666653

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=4.8e-07  Score=80.31  Aligned_cols=194  Identities=21%  Similarity=0.150  Sum_probs=122.5

Q ss_pred             CCceEEEEEecCCCcccCCCc-ccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEE-echhhHHHHhhcCcccc
Q 014150          122 SCVKEFILEIWKGQRYKVPSS-LFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHIT-LSQDVFENLISSSPTLE  197 (430)
Q Consensus       122 ~~l~~l~l~~~~~~~~~lp~~-~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~-~~~~~l~~l~s~cp~Le  197 (430)
                      .+++.|++.....  ..+|.. +..++.|+.|+++++.+..  +..+..++.++.+...... +..- -...++++++|+
T Consensus        32 ~~~~~L~Ls~N~i--~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l-~~~~~~~l~~L~  108 (284)
T d1ozna_          32 AASQRIFLHGNRI--SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV-DPATFHGLGRLH  108 (284)
T ss_dssp             TTCSEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCC-CTTTTTTCTTCC
T ss_pred             CCCCEEECcCCcC--CCCCHHHhhccccccccccccccccccccccccccccccccccccccccccc-cchhhcccccCC
Confidence            5677777654322  345653 4567899999999887653  4456678888888765443 2211 133467889999


Q ss_pred             ceEeeccCCceEEE----EeCCCcceEEEecc-cc---ceeeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccC
Q 014150          198 RLTLMNFDGFTHLN----IDAPNLQFFDIGGV-FD---DVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHL  269 (430)
Q Consensus       198 ~L~l~~c~~~~~l~----i~~p~L~~L~l~~~-~~---~~~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~  269 (430)
                      +|.+.++... .+.    -..++|+.+.+.+. ..   .-.+..+++|+.|++........           ....+.++
T Consensus       109 ~L~l~~n~~~-~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l-----------~~~~f~~l  176 (284)
T d1ozna_         109 TLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV-----------PERAFRGL  176 (284)
T ss_dssp             EEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE-----------CTTTTTTC
T ss_pred             EEecCCcccc-cccccccchhcccchhhhccccccccChhHhccccchhhcccccCccccc-----------chhhhccc
Confidence            9999876421 111    12467888888763 22   22356788999998875432211           01336788


Q ss_pred             CCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCC
Q 014150          270 PHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPE  339 (430)
Q Consensus       270 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~  339 (430)
                      ++|+.+.++.+.+....    +..+. .+++|++|+++.......    ....+..+++|+.|++++++-
T Consensus       177 ~~L~~l~l~~N~l~~i~----~~~f~-~l~~L~~L~l~~N~i~~~----~~~~~~~~~~L~~L~l~~N~l  237 (284)
T d1ozna_         177 HSLDRLLLHQNRVAHVH----PHAFR-DLGRLMTLYLFANNLSAL----PTEALAPLRALQYLRLNDNPW  237 (284)
T ss_dssp             TTCCEEECCSSCCCEEC----TTTTT-TCTTCCEEECCSSCCSCC----CHHHHTTCTTCCEEECCSSCE
T ss_pred             cccchhhhhhccccccC----hhHhh-hhhhcccccccccccccc----cccccccccccCEEEecCCCC
Confidence            99999999987664321    11111 456889888854432221    234578899999999998753

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.98  E-value=6.8e-07  Score=81.62  Aligned_cols=111  Identities=14%  Similarity=0.146  Sum_probs=64.1

Q ss_pred             CCceeEEEEEeccCCCcchHHHHHHHH-HhCCceEEEEEecCCCc--c-------cCCCcccccCceeEEEEeeeeecCC
Q 014150           93 NGPILKFKLSHRDLLGVSDIDRWILYM-SRSCVKEFILEIWKGQR--Y-------KVPSSLFLCQNLIHLELFNCLLKPP  162 (430)
Q Consensus        93 ~~~l~~l~l~~~~~~~~~~v~~wl~~~-~~~~l~~l~l~~~~~~~--~-------~lp~~~~~~~~L~~L~L~~~~~~~~  162 (430)
                      ...++.+.+..... +...+....... ..+.++.+.+.......  .       .+...+..+++|+.|+|++|.+...
T Consensus        30 ~~~l~~L~Ls~n~i-~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~  108 (344)
T d2ca6a1          30 DDSVKEIVLSGNTI-GTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT  108 (344)
T ss_dssp             CSCCCEEECTTSEE-CHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred             CCCCCEEECcCCcC-CHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccc
Confidence            34577777765321 222223222211 23678888875332111  0       1223345679999999999987652


Q ss_pred             C------CCCCCCCcceEEeeeEEechhhHHHH------------hhcCccccceEeecc
Q 014150          163 S------TFKGFRNLKSLDLQHITLSQDVFENL------------ISSSPTLERLTLMNF  204 (430)
Q Consensus       163 ~------~~~~~~~L~~L~L~~~~~~~~~l~~l------------~s~cp~Le~L~l~~c  204 (430)
                      .      .+..+++|+.|++.++.+++.....+            ...++.|+.|.+.+.
T Consensus       109 ~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n  168 (344)
T d2ca6a1         109 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN  168 (344)
T ss_dssp             THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred             cccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccc
Confidence            1      12257999999999998765432222            234677777777653

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=5.1e-07  Score=72.82  Aligned_cols=38  Identities=16%  Similarity=0.253  Sum_probs=19.8

Q ss_pred             CCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeecc
Q 014150          165 FKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNF  204 (430)
Q Consensus       165 ~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c  204 (430)
                      +.++.+|++|+|+++.++.  ++.+...++.|+.|+++++
T Consensus        14 ~~n~~~lr~L~L~~n~I~~--i~~~~~~l~~L~~L~Ls~N   51 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDN   51 (162)
T ss_dssp             EECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSS
T ss_pred             ccCcCcCcEEECCCCCCCc--cCccccccccCCEEECCCC
Confidence            3445556666666655532  1233445556666666654

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.95  E-value=1.2e-06  Score=67.13  Aligned_cols=52  Identities=21%  Similarity=0.165  Sum_probs=29.7

Q ss_pred             EEEEeeeeecCCCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeecc
Q 014150          151 HLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNF  204 (430)
Q Consensus       151 ~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c  204 (430)
                      .|+|+++.+...+.+.++++|+.|+++++.+..  +...++.+++|+.|.+.+.
T Consensus         2 ~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~~--lp~~~~~l~~L~~L~l~~N   53 (124)
T d1dcea3           2 VLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRA--LPPALAALRCLEVLQASDN   53 (124)
T ss_dssp             EEECTTSCCSSCCCGGGGTTCCEEECCSSCCCC--CCGGGGGCTTCCEEECCSS
T ss_pred             EEEcCCCCCCCCcccccCCCCCEEECCCCccCc--chhhhhhhhcccccccccc
Confidence            466666666554455566666666666666542  2222455666666666653

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=1.2e-05  Score=69.11  Aligned_cols=182  Identities=16%  Similarity=0.195  Sum_probs=100.4

Q ss_pred             ccCCCcccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEE---
Q 014150          137 YKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLN---  211 (430)
Q Consensus       137 ~~lp~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~---  211 (430)
                      ..+|..+.  +++++|+++++.+..  +..|.++++|++|+|.++.+....-...+.+++.+++|.+..+..+..+.   
T Consensus        21 ~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~   98 (242)
T d1xwdc1          21 TEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEA   98 (242)
T ss_dssp             SSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTS
T ss_pred             CCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccc
Confidence            35666543  478999999987754  34578899999999998865332112235678899999888776554433   


Q ss_pred             -EeCCCcceEEEeccc-cce-eeccCCCceEEEEEEEeeccccccCCCCCcchHHHHhccC-CCccEEEEeeeeeehhhc
Q 014150          212 -IDAPNLQFFDIGGVF-DDV-TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHL-PHIRRLEIQSYFLKYLAI  287 (430)
Q Consensus       212 -i~~p~L~~L~l~~~~-~~~-~~~~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~  287 (430)
                       -..++|+.+.+.+.. ... .+..+.++..+...........      ...  ...+.++ ..+..|.+..+.+..+..
T Consensus        99 ~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~------~i~--~~~~~~~~~~l~~L~l~~n~l~~i~~  170 (242)
T d1xwdc1          99 FQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH------TIE--RNSFVGLSFESVILWLNKNGIQEIHN  170 (242)
T ss_dssp             EECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCC------EEC--TTSSTTSBSSCEEEECCSSCCCEECT
T ss_pred             ccccccccccccchhhhcccccccccccccccccccccccccc------ccc--ccccccccccceeeeccccccccccc
Confidence             245888888887642 111 2234455555554433221100      000  0112333 467778887665542211


Q ss_pred             ccCCCCCCccccccceeEEEEeeCChhhHHHH-HHHHhcCCCccEEEEeecC
Q 014150          288 GNVPSRLPRPCVDLNYLSIRINFNDLEENLAA-LCLLRSSPNLQELEMLARP  338 (430)
Q Consensus       288 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-~~ll~~~p~L~~L~l~~~~  338 (430)
                      .        .|...+.+.+..  .....+..+ ...+.++++|+.|+|.++.
T Consensus       171 ~--------~~~~~~l~~~~~--l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~  212 (242)
T d1xwdc1         171 C--------AFNGTQLDELNL--SDNNNLEELPNDVFHGASGPVILDISRTR  212 (242)
T ss_dssp             T--------TTTTCCEEEEEC--TTCTTCCCCCTTTTTTSCCCSEEECTTSC
T ss_pred             c--------cccchhhhcccc--ccccccccccHHHhcCCCCCCEEECCCCc
Confidence            1        122222222211  111111112 1247889999999998865

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.65  E-value=1.4e-05  Score=60.86  Aligned_cols=59  Identities=25%  Similarity=0.350  Sum_probs=31.4

Q ss_pred             ccccCceeEEEEeeeeecC-CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeecc
Q 014150          143 LFLCQNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNF  204 (430)
Q Consensus       143 ~~~~~~L~~L~L~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c  204 (430)
                      +..+++|++|++++|.+.. |.++..+++|+.|+++++.++.-  .. +..+|+|++|.+.+.
T Consensus        16 l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l--~~-~~~l~~L~~L~l~~N   75 (124)
T d1dcea3          16 LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV--DG-VANLPRLQELLLCNN   75 (124)
T ss_dssp             GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCC--GG-GTTCSSCCEEECCSS
T ss_pred             cccCCCCCEEECCCCccCcchhhhhhhhccccccccccccccc--Cc-cccccccCeEECCCC
Confidence            4445566666666665544 23455566666666666555421  11 345566666666543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.65  E-value=1.4e-05  Score=66.13  Aligned_cols=65  Identities=18%  Similarity=0.186  Sum_probs=42.2

Q ss_pred             ccCCCcccccCceeEEEEeeeeecC---CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeecc
Q 014150          137 YKVPSSLFLCQNLIHLELFNCLLKP---PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNF  204 (430)
Q Consensus       137 ~~lp~~~~~~~~L~~L~L~~~~~~~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c  204 (430)
                      ..+|..+.  +++++|+|++|.+..   +..|.++++|+.|+|.++.+..- ....+...+.|++|.+++.
T Consensus        21 ~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~-~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          21 KEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI-EPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             SSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSC
T ss_pred             CccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccc-cccccccccccceeeeccc
Confidence            45665543  577888888887642   34566788888888887775432 2334556777777777764

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=2.2e-05  Score=73.63  Aligned_cols=36  Identities=22%  Similarity=0.288  Sum_probs=24.5

Q ss_pred             CCcceEEeeeEEechhhHHHHhhcCccccceEeecc
Q 014150          169 RNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNF  204 (430)
Q Consensus       169 ~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c  204 (430)
                      ++|++|+++++.+++..+..++..++.|++|.|.+|
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~   37 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC   37 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCC
Confidence            356677776666766666666666777777777766

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.89  E-value=0.00038  Score=57.02  Aligned_cols=83  Identities=19%  Similarity=0.215  Sum_probs=58.3

Q ss_pred             CCceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccce
Q 014150          122 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERL  199 (430)
Q Consensus       122 ~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L  199 (430)
                      .++++|++.........-+..+...++|+.|+|+++.+..  +..|..+++|+.|+|+++.+..- -...+.+.++|++|
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l-~~~~F~~l~~L~~L  107 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEI-SNKMFLGLHQLKTL  107 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEE-CSSSSTTCTTCCEE
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecccccccc-CHHHHhCCCccccc
Confidence            5678887764433211222334567999999999987754  45677899999999999986532 12346778999999


Q ss_pred             EeeccC
Q 014150          200 TLMNFD  205 (430)
Q Consensus       200 ~l~~c~  205 (430)
                      .|.+..
T Consensus       108 ~L~~N~  113 (192)
T d1w8aa_         108 NLYDNQ  113 (192)
T ss_dssp             ECCSSC
T ss_pred             ccCCcc
Confidence            998753

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=96.88  E-value=7e-05  Score=61.99  Aligned_cols=99  Identities=19%  Similarity=0.157  Sum_probs=64.5

Q ss_pred             hCCceEEEEEecCCCcccCCCcccccCceeEEEEeeeeecCCCCC-CCCCCcceEEeeeEEechhhHHHHhhcCccccce
Q 014150          121 RSCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTF-KGFRNLKSLDLQHITLSQDVFENLISSSPTLERL  199 (430)
Q Consensus       121 ~~~l~~l~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L  199 (430)
                      -.++++|++......  .++ .+..+++|+.|+|++|.+..-+.+ ..+++|+.|++.++.++.  +.. +..+++|+.|
T Consensus        47 L~~L~~L~Ls~n~I~--~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~--l~~-~~~l~~L~~L  120 (198)
T d1m9la_          47 LKACKHLALSTNNIE--KIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS--LSG-IEKLVNLRVL  120 (198)
T ss_dssp             TTTCCEEECSEEEES--CCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCC--HHH-HHHHHHSSEE
T ss_pred             ccccceeECcccCCC--Ccc-cccCCccccChhhcccccccccccccccccccccccccccccc--ccc-cccccccccc
Confidence            367888887544322  233 356778899999998887653332 245788999998888764  222 5567889999


Q ss_pred             EeeccC--CceEEE--EeCCCcceEEEecc
Q 014150          200 TLMNFD--GFTHLN--IDAPNLQFFDIGGV  225 (430)
Q Consensus       200 ~l~~c~--~~~~l~--i~~p~L~~L~l~~~  225 (430)
                      +++++.  .+..+.  -..|+|+.|.+.|+
T Consensus       121 ~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N  150 (198)
T d1m9la_         121 YMSNNKITNWGEIDKLAALDKLEDLLLAGN  150 (198)
T ss_dssp             EESEEECCCHHHHHHHTTTTTCSEEEECSS
T ss_pred             ccccchhccccccccccCCCccceeecCCC
Confidence            888753  111111  13578888888874

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=96.82  E-value=0.00064  Score=60.90  Aligned_cols=31  Identities=23%  Similarity=0.175  Sum_probs=13.4

Q ss_pred             eeEEEEeeeeecCCCCCCCCCCcceEEeeeE
Q 014150          149 LIHLELFNCLLKPPSTFKGFRNLKSLDLQHI  179 (430)
Q Consensus       149 L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~  179 (430)
                      |++|+++++.+..-+.+..+++|+.|++.++
T Consensus       100 L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~~  130 (353)
T d1jl5a_         100 LEYLGVSNNQLEKLPELQNSSFLKIIDVDNN  130 (353)
T ss_dssp             CCEEECCSSCCSSCCCCTTCTTCCEEECCSS
T ss_pred             cccccccccccccccchhhhccceeeccccc
Confidence            4444444444433222334444555544443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.76  E-value=0.00025  Score=56.80  Aligned_cols=28  Identities=21%  Similarity=0.292  Sum_probs=17.8

Q ss_pred             cHHHHHHHHHccCCCcceEEEeecCCCch
Q 014150          375 SELEFIKFVLSNSPVLETMTIKPASLEGG  403 (430)
Q Consensus       375 ~e~~~~~~il~~~~~L~~l~i~~~~~~~~  403 (430)
                      ....++..+ ...++|+++.+++...++.
T Consensus       119 ~~~~l~~~L-~~n~sL~~l~l~~~~~~~~  146 (167)
T d1pgva_         119 VEMDMMMAI-EENESLLRVGISFASMEAR  146 (167)
T ss_dssp             HHHHHHHHH-HHCSSCCEEECCCCCHHHH
T ss_pred             HHHHHHHHH-HhCCCccEeeCcCCCchHH
Confidence            345566544 5558899998877654433

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.71  E-value=0.00063  Score=57.71  Aligned_cols=81  Identities=14%  Similarity=0.115  Sum_probs=55.2

Q ss_pred             CCceEEEEEecCCCcccCCCc-ccccCceeEEEEeeeeecC---CCCCCCCCCcceEEeeeEE-echhhHHHHhhcCccc
Q 014150          122 SCVKEFILEIWKGQRYKVPSS-LFLCQNLIHLELFNCLLKP---PSTFKGFRNLKSLDLQHIT-LSQDVFENLISSSPTL  196 (430)
Q Consensus       122 ~~l~~l~l~~~~~~~~~lp~~-~~~~~~L~~L~L~~~~~~~---~~~~~~~~~L~~L~L~~~~-~~~~~l~~l~s~cp~L  196 (430)
                      ++++.+++.....  ..+|.. +..+++|++|+++++.+..   +..|.+++++++|.+..+. +... ....+.+++.|
T Consensus        29 ~~l~~L~Ls~n~i--~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~-~~~~~~~l~~L  105 (242)
T d1xwdc1          29 RNAIELRFVLTKL--RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI-NPEAFQNLPNL  105 (242)
T ss_dssp             SCCSEEEEESCCC--CEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEE-CTTSEECCTTC
T ss_pred             CCCCEEECcCCcC--CccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccc-ccccccccccc
Confidence            5788888865432  346654 3568999999999886532   3456788999999887643 2221 13346778999


Q ss_pred             cceEeeccC
Q 014150          197 ERLTLMNFD  205 (430)
Q Consensus       197 e~L~l~~c~  205 (430)
                      ++|.+.++.
T Consensus       106 ~~l~l~~~~  114 (242)
T d1xwdc1         106 QYLLISNTG  114 (242)
T ss_dssp             CEEEEESCC
T ss_pred             cccccchhh
Confidence            999998763

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.43  E-value=0.00053  Score=54.75  Aligned_cols=74  Identities=9%  Similarity=0.116  Sum_probs=36.1

Q ss_pred             HHHhccCCCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEe---eCChhhHHHHHHHHhcCCCccEEEEeec
Q 014150          263 LRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRIN---FNDLEENLAALCLLRSSPNLQELEMLAR  337 (430)
Q Consensus       263 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~---~~~~~~~~~l~~ll~~~p~L~~L~l~~~  337 (430)
                      ...+...+.|++|+|+.+.+...........+. .-+.|++|++...   ..+......+...++..++|++|.+++.
T Consensus        65 a~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~-~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          65 IELIETSPSLRVLNVESNFLTPELLARLLRSTL-VTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTT-TTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             hhhhhhcccccceeeehhhcchHHHHHHHHHHH-hCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            344455556666666555433211000000011 2235666666322   1122334456777788888888877664

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.32  E-value=0.001  Score=52.90  Aligned_cols=40  Identities=13%  Similarity=0.031  Sum_probs=25.6

Q ss_pred             cccceeEEEEee--CChhhHHHHHHHHhcCCCccEEEEeecC
Q 014150          299 VDLNYLSIRINF--NDLEENLAALCLLRSSPNLQELEMLARP  338 (430)
Q Consensus       299 ~~L~~L~l~~~~--~~~~~~~~l~~ll~~~p~L~~L~l~~~~  338 (430)
                      ++|+.+.|..+.  .+......+...++.+++|++|++.+..
T Consensus       102 ~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_         102 TSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             SSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             ccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence            456655554332  2234445677788899999999987643

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.07  E-value=0.00089  Score=52.70  Aligned_cols=68  Identities=22%  Similarity=0.213  Sum_probs=48.5

Q ss_pred             cccCCCcccccCceeEEEEeeee-ecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccceEeecc
Q 014150          136 RYKVPSSLFLCQNLIHLELFNCL-LKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNF  204 (430)
Q Consensus       136 ~~~lp~~~~~~~~L~~L~L~~~~-~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c  204 (430)
                      ..+.|..+...++|++|++.++. +..  +.+|.++++|+.|+|+++.+..-. ...+.+.++|++|+|++.
T Consensus        20 ~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~-~~~f~~l~~L~~L~Ls~N   90 (156)
T d2ifga3          20 ALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA-PDAFHFTPRLSRLNLSFN   90 (156)
T ss_dssp             CCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC-TTGGGSCSCCCEEECCSS
T ss_pred             CccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcc-cccccccccccceeccCC
Confidence            34566666677889999987653 433  456788999999999988765321 234667888888888865

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.48  E-value=0.0026  Score=50.42  Aligned_cols=135  Identities=13%  Similarity=0.060  Sum_probs=71.7

Q ss_pred             HHHHhccCCCccEEEEeee-eeehhhcccCCCCCCccccccceeEEEEeeCChhhHHHHHHHHhcCCCccEEEEeecCCC
Q 014150          262 LLRFFVHLPHIRRLEIQSY-FLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEE  340 (430)
Q Consensus       262 ~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~  340 (430)
                      +..+..+.|+|++|.+++. .+...........+. ..++|++|+++.+..+...+..+...++..++++.|++..+...
T Consensus         9 l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~-~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_           9 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALK-TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHT-TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             HHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHh-cCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence            3455566677777777642 221111000000011 34567777776554444556667777888888888888776533


Q ss_pred             CcccccccceecccccccccCceEEEEEeee---cCccHHHHHHHHHccCCCcceEEEeecCCCch
Q 014150          341 TGIGVLTNFWEVDHWTSLFSQLRMVKIVGIS---GIRSELEFIKFVLSNSPVLETMTIKPASLEGG  403 (430)
Q Consensus       341 ~~~~~~~~~w~~~~~~~~~~~L~~v~i~~~~---~~~~e~~~~~~il~~~~~L~~l~i~~~~~~~~  403 (430)
                      ..   ....+.+..  ...++|+.+.+....   +......++. .++..+.|+++.+.....+..
T Consensus        88 ~~---g~~~l~~~l--~~~~~L~~l~L~l~~n~i~~~~~~~La~-~L~~n~~L~~L~l~~~~~~~~  147 (166)
T d1io0a_          88 GS---GILALVEAL--QSNTSLIELRIDNQSQPLGNNVEMEIAN-MLEKNTTLLKFGYHFTQQGPR  147 (166)
T ss_dssp             HH---HHHHHHHGG--GGCSSCCEEECCCCSSCCCHHHHHHHHH-HHHHCSSCCEEECCCSSHHHH
T ss_pred             ch---hHHHHHHHH--HhCccccEEeeccCCCcCcHHHHHHHHH-HHHhCCCcCEEeCcCCCCcHH
Confidence            10   000000111  134667777665321   2233345554 456779999999987664433

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.72  E-value=0.0044  Score=48.49  Aligned_cols=79  Identities=19%  Similarity=0.167  Sum_probs=50.9

Q ss_pred             CCceEEEEEecCCCcccCCCc-ccccCceeEEEEeeeeecC--CCCCCCCCCcceEEeeeEEechhhHHHHhhcCccccc
Q 014150          122 SCVKEFILEIWKGQRYKVPSS-LFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLER  198 (430)
Q Consensus       122 ~~l~~l~l~~~~~~~~~lp~~-~~~~~~L~~L~L~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~  198 (430)
                      .+++++.+.... .-..++.. +...++|+.|+|++|.+..  +.+|..+++|++|+|+++.+..-. ..++ ....|+.
T Consensus        31 ~~l~~L~l~~n~-~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~-~~~~-~~~~l~~  107 (156)
T d2ifga3          31 ENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLS-WKTV-QGLSLQE  107 (156)
T ss_dssp             SCCSEEECCSCS-SCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCC-STTT-CSCCCCE
T ss_pred             cccCeeecCCCc-cccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccC-hhhh-ccccccc
Confidence            467777664221 11234443 4457999999999998764  456889999999999999875211 1112 2345777


Q ss_pred             eEeec
Q 014150          199 LTLMN  203 (430)
Q Consensus       199 L~l~~  203 (430)
                      |.|.+
T Consensus       108 L~L~~  112 (156)
T d2ifga3         108 LVLSG  112 (156)
T ss_dssp             EECCS
T ss_pred             cccCC
Confidence            77764

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=92.78  E-value=0.022  Score=50.20  Aligned_cols=69  Identities=16%  Similarity=0.117  Sum_probs=40.3

Q ss_pred             CCCCcceEEeeeEEechhhHHHHhhcCccccceEeeccCCceEEEEeCCCcceEEEeccccceeeccCC-CceEEEE
Q 014150          167 GFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTF-HLALVSI  242 (430)
Q Consensus       167 ~~~~L~~L~L~~~~~~~~~l~~l~s~cp~Le~L~l~~c~~~~~l~i~~p~L~~L~l~~~~~~~~~~~~p-~L~~l~i  242 (430)
                      .+++|++|+|+++.+..  +.   ...++|+.|.+.++. ++.+.-..++|+.|++.++.-. .+.+.| +|+.|.+
T Consensus       282 ~~~~L~~L~Ls~N~l~~--lp---~~~~~L~~L~L~~N~-L~~l~~~~~~L~~L~L~~N~L~-~lp~~~~~L~~L~~  351 (353)
T d1jl5a_         282 LPPSLEELNVSNNKLIE--LP---ALPPRLERLIASFNH-LAEVPELPQNLKQLHVEYNPLR-EFPDIPESVEDLRM  351 (353)
T ss_dssp             CCTTCCEEECCSSCCSC--CC---CCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCS-SCCCCCTTCCEEEC
T ss_pred             cCCCCCEEECCCCccCc--cc---cccCCCCEEECCCCc-CCccccccCCCCEEECcCCcCC-CCCccccccCeeEC
Confidence            35778888888776542  11   246778888887653 3333323457888887765322 233333 5666654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.70  E-value=0.0051  Score=48.42  Aligned_cols=87  Identities=14%  Similarity=0.024  Sum_probs=46.6

Q ss_pred             cCCCceEEEEEEEeeccccccCCCCCcchHHHHhccCCCccEEEEeeeeeehhhcccCCCCCCccccccceeEEEEeeC-
Q 014150          233 NTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFN-  311 (430)
Q Consensus       233 ~~p~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-  311 (430)
                      .+|.|+.|+++.+...         +...+...+..+++|+.|+++++.+..+......     ...+|+.|.+...-. 
T Consensus        63 ~~~~L~~L~Ls~N~i~---------~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l-----~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          63 NIPELLSLNLSNNRLY---------RLDDMSSIVQKAPNLKILNLSGNELKSERELDKI-----KGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HCTTCCCCCCCSSCCC---------CCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHH-----TTCCCSSCCCTTSTTS
T ss_pred             hCCCCCEeeCCCcccc---------CCchhHHHHhhCCcccccccccCccccchhhhhh-----hccccceeecCCCCcC
Confidence            4566666666544321         1122234456778888888887776543321111     123567777633211 


Q ss_pred             --ChhhHHHHHHHHhcCCCccEEE
Q 014150          312 --DLEENLAALCLLRSSPNLQELE  333 (430)
Q Consensus       312 --~~~~~~~l~~ll~~~p~L~~L~  333 (430)
                        ..........+++.+|+|+.|+
T Consensus       129 ~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         129 DTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             SSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             cCcccchhHHHHHHHHCCCCCEEC
Confidence              1112234556778888888774

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.20  E-value=0.028  Score=43.89  Aligned_cols=58  Identities=28%  Similarity=0.218  Sum_probs=34.3

Q ss_pred             ccCceeEEEEeeeeecCCCC----CCCCCCcceEEeeeEEech-hhHHHHhhcCccccceEeecc
Q 014150          145 LCQNLIHLELFNCLLKPPST----FKGFRNLKSLDLQHITLSQ-DVFENLISSSPTLERLTLMNF  204 (430)
Q Consensus       145 ~~~~L~~L~L~~~~~~~~~~----~~~~~~L~~L~L~~~~~~~-~~l~~l~s~cp~Le~L~l~~c  204 (430)
                      .+++|++|+|++|.+..-.+    +..+++|+.|+|+++.+++ +.+.. + ....|++|.+.+.
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~-l-~~~~L~~L~L~~N  125 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK-I-KGLKLEELWLDGN  125 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHH-H-TTCCCSSCCCTTS
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhh-h-hccccceeecCCC
Confidence            35677777777777654222    2357777777777777654 22322 2 2345677766654